Citrus Sinensis ID: 012799

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
Protein Sequence
MEIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT
Secondary Structure (PSIPRED)
cEEEccccccEEEEEEcccccEEEccEEcccccccccHHHHHHHHHcccccccEEEEEcccEEEEcccccccccccccccEEEEEEEcccEEEEEcccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEccccccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEcccccEEEEEccccEEEEEEccccccEEEEEEccccEEEEccccccEEEEcccHHHHHHHcccccEEEcccccEEEEEEccccEEEEccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccccccccEEEcccccccEEEEEEcccccEEEEEcccccEEcc
Secondary Structure Prediction (SSPRO)
cEEEEcccccEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEccccccEEEEEEcccEEEccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEHEEccccccccEEEEEEccccccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEccccEEEEcccccEEEEEEcccccEEEEEcccEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEcccccccccccEEEEEEcccccEEEEEccccEEEEc
Coil and Loop (DISEMBL)
meietettNNVMClltdpegnplgapmyfpqnagpqQLSQIVNKLLnneeklpyafyisdhellvPLGSYLEKHKVSVEKVLSIVYqpqavfrirpvnrcsatiAGHTEAVLSvafspdgrqlasgsgdttvrlwdlntqtpmfkctghknwVLCIAWsadgkhlvsgskagelqcwdpqtgkpsgnplsghkkwitgiswepvhlnapcrrfvsaskdgdariwDVSLRKCVICLSGHTLAVTCVKwggdgviytgsqdcTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALrtgafdhtgkqysspeEMKKAALERYNKikgnaperlvsgsddftmflwepavskqpktrmtghqqlvnhvyfspdgqwvasASFDKsiklwngttgKFVAVFRGHVGPVYQIRFELIYcfrypsnfycvvDMSCcmslyswsadsrlllsgskdstlkvt
Flexible Loop (DISEMBL)
meietettnnvMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFdhtgkqysspEEMKKAALERYNKIkgnaperlvsgsdDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAdsrlllsgskdstlkvt
Low Complexity Region (SEG)
MEIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT
Disordered region (IsUnstruct)
**********VMCLLT***********YF********LSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW**************HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD***********************************DDFTMFLWEPAV********TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL************
Disordered Region (DISOPRED)
MEI***TTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT
Disordered Region (DISEMBL)
********NNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH***********KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT
Disordered Region (DISPRO)
MEIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	456	2.2.26 [Sep-21-2011]
Q9FLX9	473	Notchless protein homolog	yes	no	0.932	0.898	0.748	0.0
Q9NVX2	485	Notchless protein homolog	yes	no	0.936	0.880	0.539	1e-144
Q5RFF8	485	Notchless protein homolog	yes	no	0.921	0.865	0.547	1e-144
Q58D20	486	Notchless protein homolog	yes	no	0.929	0.872	0.536	1e-143
Q8VEJ4	485	Notchless protein homolog	yes	no	0.921	0.865	0.540	1e-142
P25382	515	Ribosome assembly protein	yes	no	0.896	0.794	0.460	1e-115
O74855	502	Ribosome assembly protein	yes	no	0.885	0.804	0.422	1e-100
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.708	0.211	0.329	1e-43
Q00808	1356	Vegetative incompatibilit	no	no	0.627	0.210	0.363	8e-42
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.760	0.275	0.313	6e-39

>sp|Q9FLX9|NLE1_ARATH Notchless protein homolog OS=Arabidopsis thaliana GN=NLE1 PE=2 SV=1

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/453 (74%), Positives = 389/453 (85%), Gaps = 28/453 (6%)

Query: 3   IETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHE 62
           ++T+    VMCLLTDPEG  LG+ MY PQ AGP QL+Q+VN+ L+NEE LPY+FY+SD E
Sbjct: 4   MDTDEGKTVMCLLTDPEGTHLGSAMYIPQKAGPLQLTQLVNRFLDNEEMLPYSFYVSDEE 63

Query: 63  LLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQ 122
           LLVP+G+YLEK+KVSVEKVL+IVYQ QAVFRIRPVNRCS TIAGH EAVL V+FSPDG+Q
Sbjct: 64  LLVPVGTYLEKNKVSVEKVLTIVYQQQAVFRIRPVNRCSQTIAGHAEAVLCVSFSPDGKQ 123

Query: 123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
           LASGSGDTTVRLWDL T+TP+F C GHKNWVL +AWS DGKHLVSGSK+GE+ CW+P+ G
Sbjct: 124 LASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKKG 183

Query: 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242
           +  G+PL+GHKKWITGISWEPVHL++PCRRFV++SKDGDARIWD++L+K +ICLSGHTLA
Sbjct: 184 ELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLSGHTLA 243

Query: 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
           VTCVKWGGDG+IYTGSQDCTIK+WETTQGKLIRELKGHGHW+NSLALSTEY LRTGAFDH
Sbjct: 244 VTCVKWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTEYVLRTGAFDH 303

Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
           TG+QY  P E K+ ALERYNK KG++PERLVSGSDDFTMFLWEP+VSKQPK R+TGHQQL
Sbjct: 304 TGRQY-PPNEEKQKALERYNKTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQL 362

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422
           VNHVYFSPDG+W+ASASFDKS++LWNG TG+FV VFRGHVGPVYQ+              
Sbjct: 363 VNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQV-------------- 408

Query: 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                        SWSADSRLLLSGSKDSTLK+
Sbjct: 409 -------------SWSADSRLLLSGSKDSTLKI 428

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NVX2|NLE1_HUMAN Notchless protein homolog 1 OS=Homo sapiens GN=NLE1 PE=1 SV=4

 Score =  512 bits (1318), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/460 (53%), Positives = 310/460 (67%), Gaps = 33/460 (7%)

Query: 2   EIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDH 61
           E        ++    D  G  LG+P   P +  P +L  + N LL  E+ LP AF++ D 
Sbjct: 8   EAVARDVQRLLVQFQDEGGQLLGSPFDVPVDITPDRLQLVCNALLAQEDPLPLAFFVHDA 67

Query: 62  ELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGR 121
           E++  LG  LE   V  EKVL I+YQPQA+FR+R V RC++++ GH+EAV+SVAFSP G+
Sbjct: 68  EIVSSLGKTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGK 127

Query: 122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181
            LASGSGDTTVR WDL+T+TP F C GH++WVL I+WS DG+ L SG K G++  WDP T
Sbjct: 128 YLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGRKLASGCKNGQILLWDPST 187

Query: 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL 241
           GK  G  L+GH KWITG+SWEP+H N  CR   S+SKDG  RIWD +  +C   L+GHT 
Sbjct: 188 GKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQ 247

Query: 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
           +VTC++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+
Sbjct: 248 SVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFE 307

Query: 302 HTGKQYS------SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR 355
                 +      S +E+K+ AL RYN ++G  PERLVSGSDDFT+FLW PA  K+P TR
Sbjct: 308 PAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLTR 367

Query: 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC 415
           MTGHQ L+N V FSPD + VASASFDKSIKLW+G TGK++A  RGHV  VYQI       
Sbjct: 368 MTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI------- 420

Query: 416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                               +WSADSRLL+SGS DSTLKV
Sbjct: 421 --------------------AWSADSRLLVSGSSDSTLKV 440

Homo sapiens (taxid: 9606)

>sp|Q5RFF8|NLE1_PONAB Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3

 Score =  511 bits (1316), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/453 (54%), Positives = 309/453 (68%), Gaps = 33/453 (7%)

Query: 9   NNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLG 68
             ++    D  G  LG+P   P +  P +L  + N LL  E+ LP AF++ D E++  LG
Sbjct: 15  QRLLVQFQDEGGQLLGSPFDVPVDITPDRLQLVCNALLAQEDPLPLAFFVHDAEIISSLG 74

Query: 69  SYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSG 128
             LE   V  EKVL I+YQPQA+FR+R V RC++++ GH+EAV+SVAFSP G+ LASGSG
Sbjct: 75  KTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSG 134

Query: 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188
           DTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP TGK  G  
Sbjct: 135 DTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRT 194

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
           L+GH KWITG+SWEP+H N  CR   S+SKDG  RIWD +  +C   L+GHT +VTC++W
Sbjct: 195 LAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQSVTCLRW 254

Query: 249 GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308
           GGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+      +
Sbjct: 255 GGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVN 314

Query: 309 ------SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
                 S +E+K+ AL RYN ++G  PERLVSGSDDFT+FLW PA  K+P TRMTGHQ L
Sbjct: 315 PQDLQGSLQELKERALSRYNLMRGQGPERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQAL 374

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422
           +N V FSPD + VASASFDKSIKLW+G TGK++A  RGHV  VYQI              
Sbjct: 375 INQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI-------------- 420

Query: 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                        +WSADSRLL+SGS DSTLKV
Sbjct: 421 -------------AWSADSRLLVSGSSDSTLKV 440

Pongo abelii (taxid: 9601)

>sp|Q58D20|NLE1_BOVIN Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=3

 Score =  508 bits (1309), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 245/457 (53%), Positives = 307/457 (67%), Gaps = 33/457 (7%)

Query: 5   TETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELL 64
           T     ++    D  G  LG+P   P +  P +L  + N LL  E+ LP AFY+ D E++
Sbjct: 12  TRDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDAEIV 71

Query: 65  VPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLA 124
             LG  LE   V  EKVL I+YQPQA+FR+R V RC++++ GH+EAV+SVAFSP G+ LA
Sbjct: 72  SSLGRTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLA 131

Query: 125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184
           SGSGDTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP TGK 
Sbjct: 132 SGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQ 191

Query: 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT 244
            G  L+GH KWIT +SWEP+H N  CR   S+SKDG  R+WD +  +C   L+GH  +VT
Sbjct: 192 VGRALTGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERTLTGHAQSVT 251

Query: 245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD--- 301
           C++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+   
Sbjct: 252 CLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAE 311

Query: 302 ---HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
              +      S +E+K+ AL RYN ++G  PERLVSGSDDFT+FLW PA  K+P  RMTG
Sbjct: 312 ASVNAQDLRGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTG 371

Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418
           HQ L+N V FSPD + +ASASFDKSIKLW+G TGK++A  RGHV  VYQI          
Sbjct: 372 HQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI---------- 421

Query: 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                            +WSADSRLL+SGS DSTLKV
Sbjct: 422 -----------------AWSADSRLLVSGSSDSTLKV 441

Bos taurus (taxid: 9913)

>sp|Q8VEJ4|NLE1_MOUSE Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=4

 Score =  506 bits (1304), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/453 (54%), Positives = 307/453 (67%), Gaps = 33/453 (7%)

Query: 9   NNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLG 68
             ++    D  G  LG+P   P +  P +L  + N LL  EE LP AFY+ D E++  LG
Sbjct: 15  QRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEEPLPLAFYVHDAEIVSSLG 74

Query: 69  SYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSG 128
             LE   V  EK++ I+YQPQAVFR+R V RC++++ GH+EAV+SVAFSP G+ LASGSG
Sbjct: 75  KTLESQSVETEKIVDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSG 134

Query: 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188
           DTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP TG   G  
Sbjct: 135 DTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQVLLWDPSTGLQVGRT 194

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
           L+GH KWITG+SWEP+H+N  CR   S+SKDG  R+WD +  +C   L+GHT +VTC++W
Sbjct: 195 LTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRW 254

Query: 249 GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD------H 302
           GGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+      +
Sbjct: 255 GGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEATVN 314

Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
                 S +E+K+ A  RYN ++G  PERLVSGSDDFT+FLW PA  K+P  RMTGHQ L
Sbjct: 315 AQDLQGSLKELKERASSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTGHQAL 374

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422
           +N V FSPD + VASASFDKSIKLW+G TGK++A  RGHV  VYQI              
Sbjct: 375 INQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI-------------- 420

Query: 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                        +WSADSRLL+SGS DSTLKV
Sbjct: 421 -------------AWSADSRLLVSGSSDSTLKV 440

Mus musculus (taxid: 10090)

>sp|P25382|NLE1_YEAST Ribosome assembly protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSA4 PE=1 SV=3

 Score =  414 bits (1064), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/456 (46%), Positives = 291/456 (63%), Gaps = 47/456 (10%)

Query: 20  GNPLGAPMYFPQNAGPQQLSQIVNKLL-NNEEKLPYAF--YISDHELLVPL--------- 67
           G+ +G  +  P     +QL +++N+L   +++ +PY F   I   +   P+         
Sbjct: 42  GDNVGGALRVPGAISEKQLEELLNQLNGTSDDPVPYTFSCTIQGKKASDPVKTIDITDNL 101

Query: 68  -GSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSP-DGRQLAS 125
             S ++    S E  ++++Y P+AVF+++PV R S+ IAGH   +L  AF+P    ++ +
Sbjct: 102 YSSLIKPGYNSTEDQITLLYTPRAVFKVKPVTRSSSAIAGHGSTILCSAFAPHTSSRMVT 161

Query: 126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185
           G+GD T R+WD +TQTPM    GH NWVLC++WS DG+ + +GS    ++ WDP++G+  
Sbjct: 162 GAGDNTARIWDCDTQTPMHTLKGHYNWVLCVSWSPDGEVIATGSMDNTIRLWDPKSGQCL 221

Query: 186 GNPLSGHKKWITGISWEPVHLNAPCR--RFVSASKDGDARIWDVSLRKCVICLSGHTLAV 243
           G+ L GH KWIT +SWEP+HL  P    R  S+SKDG  +IWD   R C   +SGHT +V
Sbjct: 222 GDALRGHSKWITSLSWEPIHLVKPGSKPRLASSSKDGTIKIWDTVSRVCQYTMSGHTNSV 281

Query: 244 TCVKWGGDGVIYTGSQDCTIKVWE-TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
           +CVKWGG G++Y+GS D T++VW+  +QG+ I  LK H HWVN L+LST+YALR GAFDH
Sbjct: 282 SCVKWGGQGLLYSGSHDRTVRVWDINSQGRCINILKSHAHWVNHLSLSTDYALRIGAFDH 341

Query: 303 TGKQYSSPEEMKKAALERYNKI---KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359
           TGK+ S+PEE +K ALE Y KI    GN+ E +V+ SDD+TMFLW P  S +P  RMTGH
Sbjct: 342 TGKKPSTPEEAQKKALENYEKICKKNGNSEEMMVTASDDYTMFLWNPLKSTKPIARMTGH 401

Query: 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP 419
           Q+LVNHV FSPDG+++ SASFD SIKLW+G  GKF++ FRGHV  VYQ+           
Sbjct: 402 QKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFISTFRGHVASVYQV----------- 450

Query: 420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                           +WS+D RLL+S SKD+TLKV
Sbjct: 451 ----------------AWSSDCRLLVSCSKDTTLKV 470

Involved in processing and efficient intra-nuclear transport or pre-60S ribosomal subunits. Forms a complex with REA1 which is essential for ATP-dependent dissociation of a group of nonribosomal factors from the pre-60S particle.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O74855|NLE1_SCHPO Ribosome assembly protein C18.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18.05c PE=3 SV=1

 Score =  364 bits (934), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/440 (42%), Positives = 262/440 (59%), Gaps = 36/440 (8%)

Query: 25  APMYFPQNAGPQQLSQIVNKLL-NNEEKLPYAFYISDHELLVPL-----GSYLEKHKVSV 78
           A +  P N+  +QL  ++N+LL N+++ +PY F +   +  + +      S      +  
Sbjct: 45  ASLLVPGNSSVRQLEALLNQLLENSDDPVPYNFALHHEDETIEIQDNLYTSVFHNGLMKT 104

Query: 79  EKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDL 137
           E  L+++Y PQAVFR+R V RC+A++ GH   ++S  FSP    +L +GSGD T RLWD 
Sbjct: 105 EDHLTLLYTPQAVFRVRAVTRCTASMNGHDGTIISAQFSPSTSSRLVTGSGDFTARLWDC 164

Query: 138 NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT 197
           +TQTP+    GH NWV C+AW+ D   + +GS    ++ WDP+ G P G+ L  H K I 
Sbjct: 165 DTQTPIATMKGHTNWVSCVAWAPDASIIATGSMDNTIRFWDPKKGSPIGDALRRHTKPIM 224

Query: 198 GISWEPVHLNAPCRRFV--SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY 255
            + W+P+HL      ++  S SKD   RIW+V LR  +  LSGHT  +TCV+WGG   IY
Sbjct: 225 ALCWQPLHLAPDSGPYLLASGSKDNTVRIWNVKLRTLLFTLSGHTAPITCVRWGGQNWIY 284

Query: 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315
           + S D TI++W+   GK +  LKGH   VN L+LSTE+ LR+GA+DHT  +  S  + ++
Sbjct: 285 SSSYDKTIRIWDAKDGKCLHILKGHAARVNHLSLSTEHVLRSGAYDHTDFKPKSFSDERR 344

Query: 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV 375
            A ERY      + ERLVS SDD  + LW+P  S +P T+M GHQ++VNH  FSPDG+ +
Sbjct: 345 KAKERYEACLKQSGERLVSASDDLQLILWDPQKSTKPITKMHGHQKVVNHASFSPDGRCI 404

Query: 376 ASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLY 435
           A+ASFD S++LW+G TGKF+A  RGHV  VYQ                            
Sbjct: 405 ATASFDSSVRLWDGKTGKFLATLRGHVAAVYQC--------------------------- 437

Query: 436 SWSADSRLLLSGSKDSTLKV 455
           +WS DSRLL+S S+D+TLKV
Sbjct: 438 AWSTDSRLLVSSSQDTTLKV 457

Involved in processing and efficient intra-nuclear transport or pre-60S ribosomal subunits.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  177 bits (450), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 181/364 (49%), Gaps = 41/364 (11%)

Query: 99   RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
            +C  T+ GHT  V +VAFSPDG  LASGSGD TVRLWD+++   ++   GH +WV  + +
Sbjct: 1149 KCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVF 1208

Query: 159  SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218
            + DG  L SGS    ++ W+  + K       GH  W+  + + P           S S 
Sbjct: 1209 NPDGSTLASGSSDQTVRLWEINSSKCLCT-FQGHTSWVNSVVFNP-----DGSMLASGSS 1262

Query: 219  DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL 277
            D   R+WD+S  KC+    GHT  V  V +  DG ++ +GS D T+++WE +  K +   
Sbjct: 1263 DKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTF 1322

Query: 278  KGHGHWVNSLALSTE-YALRTGAFDHTGKQYS-SPEEMKKAALERYNKIKG--NAPER-- 331
            +GH  WV+S+  S +   L +G+ D T + +S S  E     L   N +     +P+   
Sbjct: 1323 QGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAI 1382

Query: 332  LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391
            L SGS D T+ LW  +  K   T + GH   V  + FSPDG  +AS S D++++LWN ++
Sbjct: 1383 LASGSGDQTVRLWSISSGKCLYT-LQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISS 1441

Query: 392  GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451
            G+ +    GH+  V  + F                           S+D  +L SGS D 
Sbjct: 1442 GECLYTLHGHINSVRSVAF---------------------------SSDGLILASGSDDE 1474

Query: 452  TLKV 455
            T+K+
Sbjct: 1475 TIKL 1478

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  171 bits (434), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 162/300 (54%), Gaps = 14/300 (4%)

Query: 100  CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
            C+ T+ GH  +VLSVAFSPDG+++ASGSGD T+++WD  + T      GH   V  +A+S
Sbjct: 959  CTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFS 1018

Query: 160  ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
             DG+ + SGS    ++ WD  +G  +   L GH  W+  + + P       +R  S S D
Sbjct: 1019 PDGQRVASGSDDKTIKIWDTASGTCT-QTLEGHGGWVQSVVFSP-----DGQRVASGSDD 1072

Query: 220  GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELK 278
               +IWD     C   L GH  +V  V +  DG  + +GS D TIK+W+   G   + L+
Sbjct: 1073 HTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLE 1132

Query: 279  GHGHWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYN---KIKGNAPE--RL 332
            GHG WV+S+A S +   + +G+ D T K + +        LE +    +    +P+  R+
Sbjct: 1133 GHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRV 1192

Query: 333  VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392
             SGS D T+ +W+ A     +T + GH   V  V FSPDGQ VAS S D +IK+W+  +G
Sbjct: 1193 ASGSSDKTIKIWDTASGTCTQT-LEGHGGWVQSVAFSPDGQRVASGSSDNTIKIWDTASG 1251

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score =  162 bits (409), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 179/380 (47%), Gaps = 33/380 (8%)

Query: 100  CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
            C  T+ GH   V SVAF PDG  LAS SGD T++LWD+   T +   TGH +WV C+A+S
Sbjct: 718  CIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFS 777

Query: 160  ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
             DG  L S +    ++ WD   GK     L  H  W+       V  +A  +   S S D
Sbjct: 778  PDGNTLASSAADHTIKLWDVSQGKCL-RTLKSHTGWV-----RSVAFSADGQTLASGSGD 831

Query: 220  GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK 278
               +IW+    +C+    GHT +V  + +  D  ++ +GS D TIK+W+      I+ L 
Sbjct: 832  RTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLH 891

Query: 279  GHGHWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIK-----GNAPER- 331
            GH + V S+A S +   L   + D + + ++        A   Y           +P+R 
Sbjct: 892  GHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAW--YGNTDWALPVAFSPDRQ 949

Query: 332  -LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
             L SGS+D T+ LW+    K   + + GH   +  + FSPD Q +ASAS D S++LWN +
Sbjct: 950  ILASGSNDKTVKLWDWQTGKYISS-LEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNIS 1008

Query: 391  TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM------SCCMSL---------Y 435
            TG+   +   H   VY + F          +  C V +       C  +L          
Sbjct: 1009 TGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGM 1068

Query: 436  SWSADSRLLLSGSKDSTLKV 455
            +WS D +LL S S D ++++
Sbjct: 1069 AWSPDGQLLASASADQSVRL 1088

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
225450034	477	PREDICTED: notchless protein homolog [Vi	0.938	0.897	0.853	0.0
297736305	475	unnamed protein product [Vitis vinifera]	0.938	0.901	0.853	0.0
449464012	478	PREDICTED: notchless protein homolog [Cu	0.938	0.895	0.844	0.0
255553492	471	Angio-associated migratory cell protein,	0.934	0.904	0.847	0.0
224104099	414	predicted protein [Populus trichocarpa]	0.901	0.992	0.893	0.0
356559633	480	PREDICTED: notchless protein homolog [Gl	0.938	0.891	0.818	0.0
40557601	482	notchless-like protein [Solanum chacoens	0.923	0.873	0.828	0.0
356499531	480	PREDICTED: notchless protein homolog [Gl	0.938	0.891	0.813	0.0
449517757	403	PREDICTED: notchless protein homolog, pa	0.872	0.987	0.892	0.0
297792623	472	hypothetical protein ARALYDRAFT_918330 [	0.936	0.904	0.742	0.0

>gi|225450034|ref|XP_002276009.1| PREDICTED: notchless protein homolog [Vitis vinifera]

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/457 (85%), Positives = 405/457 (88%), Gaps = 29/457 (6%)

Query: 1   MEIET--ETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYI 58
           MEIE   ET  NVMC LTDPEGN LG PMY PQNA P++L QIVNKLLNNEEKLPYAFYI
Sbjct: 3   MEIEEQGETGKNVMCQLTDPEGNHLGPPMYLPQNAAPKELQQIVNKLLNNEEKLPYAFYI 62

Query: 59  SDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSP 118
           SD EL+V LG+YL+K+KVSVEKVL IVYQ QAVFRIRP+NRCS+TIAGHTEAVLSVAFSP
Sbjct: 63  SDQELVVQLGTYLQKNKVSVEKVLPIVYQLQAVFRIRPINRCSSTIAGHTEAVLSVAFSP 122

Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
           DGRQLASGSGDTTVRLWDLNTQTPM+ CTGHKNWVLCIAWS DGKHLVSGSKAGELQCWD
Sbjct: 123 DGRQLASGSGDTTVRLWDLNTQTPMYTCTGHKNWVLCIAWSPDGKHLVSGSKAGELQCWD 182

Query: 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238
           PQTGKPSGNPL GHKKWITGISWEPVHL APCRRFVS+SKDGDARIWDVSLRKCVICLSG
Sbjct: 183 PQTGKPSGNPLIGHKKWITGISWEPVHLRAPCRRFVSSSKDGDARIWDVSLRKCVICLSG 242

Query: 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
           HTLAVTCVKWGGDGVIYTGSQDCTIKVWET+QGKLIRELKGHGHWVNSLALSTEY LRTG
Sbjct: 243 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETSQGKLIRELKGHGHWVNSLALSTEYVLRTG 302

Query: 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
           AFDHTGKQY+SPEEMK+ ALERY K+KGNAPERLVSGSDDFTMFLWEPA SK PKTRMTG
Sbjct: 303 AFDHTGKQYTSPEEMKEVALERYKKMKGNAPERLVSGSDDFTMFLWEPADSKHPKTRMTG 362

Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418
           HQQLVNHVYFSPDGQWVASASFDKS+KLWNGTTGKFVA FRGHVGPVYQI          
Sbjct: 363 HQQLVNHVYFSPDGQWVASASFDKSVKLWNGTTGKFVAAFRGHVGPVYQI---------- 412

Query: 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                            SWSADSRLLLSGSKDSTLKV
Sbjct: 413 -----------------SWSADSRLLLSGSKDSTLKV 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736305|emb|CBI24943.3| unnamed protein product [Vitis vinifera]

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/457 (85%), Positives = 405/457 (88%), Gaps = 29/457 (6%)

Query: 1   MEIET--ETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYI 58
           MEIE   ET  NVMC LTDPEGN LG PMY PQNA P++L QIVNKLLNNEEKLPYAFYI
Sbjct: 1   MEIEEQGETGKNVMCQLTDPEGNHLGPPMYLPQNAAPKELQQIVNKLLNNEEKLPYAFYI 60

Query: 59  SDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSP 118
           SD EL+V LG+YL+K+KVSVEKVL IVYQ QAVFRIRP+NRCS+TIAGHTEAVLSVAFSP
Sbjct: 61  SDQELVVQLGTYLQKNKVSVEKVLPIVYQLQAVFRIRPINRCSSTIAGHTEAVLSVAFSP 120

Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
           DGRQLASGSGDTTVRLWDLNTQTPM+ CTGHKNWVLCIAWS DGKHLVSGSKAGELQCWD
Sbjct: 121 DGRQLASGSGDTTVRLWDLNTQTPMYTCTGHKNWVLCIAWSPDGKHLVSGSKAGELQCWD 180

Query: 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238
           PQTGKPSGNPL GHKKWITGISWEPVHL APCRRFVS+SKDGDARIWDVSLRKCVICLSG
Sbjct: 181 PQTGKPSGNPLIGHKKWITGISWEPVHLRAPCRRFVSSSKDGDARIWDVSLRKCVICLSG 240

Query: 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
           HTLAVTCVKWGGDGVIYTGSQDCTIKVWET+QGKLIRELKGHGHWVNSLALSTEY LRTG
Sbjct: 241 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETSQGKLIRELKGHGHWVNSLALSTEYVLRTG 300

Query: 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
           AFDHTGKQY+SPEEMK+ ALERY K+KGNAPERLVSGSDDFTMFLWEPA SK PKTRMTG
Sbjct: 301 AFDHTGKQYTSPEEMKEVALERYKKMKGNAPERLVSGSDDFTMFLWEPADSKHPKTRMTG 360

Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418
           HQQLVNHVYFSPDGQWVASASFDKS+KLWNGTTGKFVA FRGHVGPVYQI          
Sbjct: 361 HQQLVNHVYFSPDGQWVASASFDKSVKLWNGTTGKFVAAFRGHVGPVYQI---------- 410

Query: 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                            SWSADSRLLLSGSKDSTLKV
Sbjct: 411 -----------------SWSADSRLLLSGSKDSTLKV 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464012|ref|XP_004149723.1| PREDICTED: notchless protein homolog [Cucumis sativus]

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/456 (84%), Positives = 407/456 (89%), Gaps = 28/456 (6%)

Query: 1   MEIE-TETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYIS 59
           M+IE  ETTNNVM LLTDPEG PLGAPMY PQNAGPQQL Q+VNKLL+NEEKLPYAFYIS
Sbjct: 5   MDIEHRETTNNVMILLTDPEGTPLGAPMYLPQNAGPQQLQQMVNKLLSNEEKLPYAFYIS 64

Query: 60  DHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPD 119
           D EL V LG+YLEK+KVSVEKVL++VYQPQAVFRIRPV+RCSATI+GH EAVLSV+FSPD
Sbjct: 65  DQELTVSLGAYLEKNKVSVEKVLTVVYQPQAVFRIRPVSRCSATISGHAEAVLSVSFSPD 124

Query: 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179
           GRQLASGSGDTTVRLWDLNTQTP+F CTGHKNWVL IAWS DGKHLVSGSKAGEL CWDP
Sbjct: 125 GRQLASGSGDTTVRLWDLNTQTPLFTCTGHKNWVLSIAWSPDGKHLVSGSKAGELFCWDP 184

Query: 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH 239
            TGKP GNPL+GHKKWITGISWEP+HL+APCRRFVS+SKDGDARIWDVSL+KCVICLSGH
Sbjct: 185 LTGKPLGNPLTGHKKWITGISWEPLHLSAPCRRFVSSSKDGDARIWDVSLKKCVICLSGH 244

Query: 240 TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
           TLA+TCVKWGGDGVIYTGSQDCTIKVWET QGKLIRELKGHGHWVNSLALSTEY LRTGA
Sbjct: 245 TLAITCVKWGGDGVIYTGSQDCTIKVWETKQGKLIRELKGHGHWVNSLALSTEYVLRTGA 304

Query: 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359
           FDHTGKQ+SSPEEMKK ALERYNK+KG+APERLVSGSDDFTMFLWEPAVSKQPK RMTGH
Sbjct: 305 FDHTGKQFSSPEEMKKVALERYNKMKGSAPERLVSGSDDFTMFLWEPAVSKQPKIRMTGH 364

Query: 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP 419
           QQLVNHVYFSPDGQWVASASFDKS+KLWNG TGKFVA FRGHVGPVYQI           
Sbjct: 365 QQLVNHVYFSPDGQWVASASFDKSVKLWNGITGKFVAAFRGHVGPVYQI----------- 413

Query: 420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                           SWSADSRLLLSGSKDSTLK+
Sbjct: 414 ----------------SWSADSRLLLSGSKDSTLKI 433

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553492|ref|XP_002517787.1| Angio-associated migratory cell protein, putative [Ricinus communis] gi|223543059|gb|EEF44594.1| Angio-associated migratory cell protein, putative [Ricinus communis]

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/453 (84%), Positives = 401/453 (88%), Gaps = 27/453 (5%)

Query: 3   IETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHE 62
           +E ET NNVMC   D EG  LGAP+Y PQN+GPQQL  IVNKLLNNEEKLP++FYISD E
Sbjct: 1   MEVETVNNVMCQFADREGTALGAPLYLPQNSGPQQLQLIVNKLLNNEEKLPFSFYISDQE 60

Query: 63  LLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQ 122
           LLVPL +YL+K+KVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGH EAVLSVAFSPDGRQ
Sbjct: 61  LLVPLETYLQKNKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHAEAVLSVAFSPDGRQ 120

Query: 123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
           LASGSGDTTVRLWDL+TQTPMF CTGHKNWVLCIAWS DGK+LVSGSKAGELQCWDPQTG
Sbjct: 121 LASGSGDTTVRLWDLSTQTPMFTCTGHKNWVLCIAWSPDGKYLVSGSKAGELQCWDPQTG 180

Query: 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242
           KP GNPL GHKKWITGISWEPVHL+APCRRFVSASKDGDARIWDVSLRKCVI L+GHTLA
Sbjct: 181 KPFGNPLVGHKKWITGISWEPVHLSAPCRRFVSASKDGDARIWDVSLRKCVISLTGHTLA 240

Query: 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
           +TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY LRTGAFDH
Sbjct: 241 ITCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYVLRTGAFDH 300

Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
           TGK YSSPEEMKK ALERYNK+KGN+PERLVSGSDDFTMFLWEPAVSK PKTRMTGHQQL
Sbjct: 301 TGKTYSSPEEMKKVALERYNKMKGNSPERLVSGSDDFTMFLWEPAVSKHPKTRMTGHQQL 360

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422
           VNHVYFSPDGQWVASASFD+S+KLWNG TGKFVA FRGHVGPVYQI              
Sbjct: 361 VNHVYFSPDGQWVASASFDRSVKLWNGVTGKFVAAFRGHVGPVYQI-------------- 406

Query: 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                        SWSADSRLLLSGSKDSTLKV
Sbjct: 407 -------------SWSADSRLLLSGSKDSTLKV 426

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104099|ref|XP_002313318.1| predicted protein [Populus trichocarpa] gi|222849726|gb|EEE87273.1| predicted protein [Populus trichocarpa]

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/414 (89%), Positives = 386/414 (93%), Gaps = 3/414 (0%)

Query: 3   IETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHE 62
           +E E  NNVMC  TDPEG PLGAP+Y PQNAGPQQL QIVNKLLNNEEKLPYAFYISD E
Sbjct: 1   MEDEAVNNVMCQFTDPEGTPLGAPLYLPQNAGPQQLQQIVNKLLNNEEKLPYAFYISDQE 60

Query: 63  LLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQ 122
           L+VPL +YL+K+KVSVEKVL+IV QPQA+FRIRPVNRCSATIAGH EAVLSVAFSPDGRQ
Sbjct: 61  LVVPLETYLQKNKVSVEKVLAIVCQPQAIFRIRPVNRCSATIAGHAEAVLSVAFSPDGRQ 120

Query: 123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
           LASGSGDTTVRLWDLNTQTPMF CTGHKNWVLCIAWS DGKHLVSGSKAGELQCWDPQTG
Sbjct: 121 LASGSGDTTVRLWDLNTQTPMFTCTGHKNWVLCIAWSPDGKHLVSGSKAGELQCWDPQTG 180

Query: 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242
           KPSGN L GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD+SLRK VICLSGHTLA
Sbjct: 181 KPSGNQLVGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDISLRKSVICLSGHTLA 240

Query: 243 VTCVKWGGDGVIYT---GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
           +TCVKWGGDGVIYT   GSQDCTIKVWET+QGKLIRELKGHGHWVNSLALSTEY LRTGA
Sbjct: 241 ITCVKWGGDGVIYTGYVGSQDCTIKVWETSQGKLIRELKGHGHWVNSLALSTEYVLRTGA 300

Query: 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359
           FDHTGK +SSPEEMKK ALERYNK+KGNAPERLVSGSDDFTMFLWEP+VSK PKTRMTGH
Sbjct: 301 FDHTGKTHSSPEEMKKVALERYNKMKGNAPERLVSGSDDFTMFLWEPSVSKHPKTRMTGH 360

Query: 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413
           QQLVNHVYFSPDG WVASASFDKS+KLWNG TGKFVA FRGHVGPVYQIRF+L 
Sbjct: 361 QQLVNHVYFSPDGNWVASASFDKSVKLWNGITGKFVAAFRGHVGPVYQIRFDLF 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559633|ref|XP_003548103.1| PREDICTED: notchless protein homolog [Glycine max]

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/462 (81%), Positives = 400/462 (86%), Gaps = 34/462 (7%)

Query: 1   MEIETET-------TNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLP 53
           ME ETET        NNVMCLLTDP+G P GAPMY PQNAGPQ L+QIVNKLLNNEEKLP
Sbjct: 1   MEAETETMVEKREIINNVMCLLTDPDGTPFGAPMYLPQNAGPQHLNQIVNKLLNNEEKLP 60

Query: 54  YAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLS 113
           YAFYIS+ ELLVPL +YL+K+KVSVEK L IV QPQA+FRIRPVNRC+ATI+GH EAVLS
Sbjct: 61  YAFYISNEELLVPLETYLQKNKVSVEKALPIVCQPQAIFRIRPVNRCTATISGHAEAVLS 120

Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
           VAFSPDG+QLASGSGDTTVR WDL TQTP++ CTGHKNWVLCIAWS DGK+LVSGSK GE
Sbjct: 121 VAFSPDGQQLASGSGDTTVRFWDLTTQTPLYTCTGHKNWVLCIAWSPDGKYLVSGSKTGE 180

Query: 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV 233
           L CWDPQTGK  GNPL GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL+KCV
Sbjct: 181 LICWDPQTGKSLGNPLIGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLKKCV 240

Query: 234 ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293
           +CLSGHTLA+TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY
Sbjct: 241 MCLSGHTLAITCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 300

Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
            LRTGAFDHTGK+YSSPEEMKK ALERY  ++GNAPERLVSGSDDFTMFLWEP ++K PK
Sbjct: 301 VLRTGAFDHTGKKYSSPEEMKKVALERYQLMRGNAPERLVSGSDDFTMFLWEPFINKHPK 360

Query: 354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413
           TRMTGHQQLVNHVYFSPDGQWVASASFDKS+KLWNGTTGKFVA FRGHVGPVYQI     
Sbjct: 361 TRMTGHQQLVNHVYFSPDGQWVASASFDKSVKLWNGTTGKFVAAFRGHVGPVYQI----- 415

Query: 414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                 SWSADSRLLLSGSKDSTLKV
Sbjct: 416 ----------------------SWSADSRLLLSGSKDSTLKV 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|40557601|gb|AAR88094.1| notchless-like protein [Solanum chacoense]

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/448 (82%), Positives = 399/448 (89%), Gaps = 27/448 (6%)

Query: 8   TNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPL 67
           TN+V+C L DPEGNPLGA +Y P+NA P++L+Q+VNKLL+NEEKLPYAFYISD EL+V L
Sbjct: 17  TNSVICQLADPEGNPLGAALYLPENASPKELNQVVNKLLSNEEKLPYAFYISDEELVVQL 76

Query: 68  GSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGS 127
           GSYLEK+KVSVEKVL+IVYQPQAVFRIRPV RCSATIAGHTEAVLSVAFSPDGRQLASGS
Sbjct: 77  GSYLEKNKVSVEKVLTIVYQPQAVFRIRPVTRCSATIAGHTEAVLSVAFSPDGRQLASGS 136

Query: 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187
           GDTTVRLWDLNTQTP+F C GH+NWVL +AWS DGKHLVSGSKAGEL CWD QTGKP GN
Sbjct: 137 GDTTVRLWDLNTQTPLFTCQGHRNWVLSVAWSPDGKHLVSGSKAGELICWDLQTGKPLGN 196

Query: 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK 247
           PL+GHKKWITGISWEPVHL+APCRRFVSASKDGDARIWDV+ RKC+ICL+GHTLA+TCVK
Sbjct: 197 PLTGHKKWITGISWEPVHLSAPCRRFVSASKDGDARIWDVTTRKCLICLTGHTLAITCVK 256

Query: 248 WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY 307
           WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY LR+GAFDHT K +
Sbjct: 257 WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYVLRSGAFDHTNKHF 316

Query: 308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY 367
           +SPEEMKK ALERYNK++GNAPERLVSGSDDFTMFLWEPAVSK PKTRMTGHQQLVNHVY
Sbjct: 317 ASPEEMKKVALERYNKMRGNAPERLVSGSDDFTMFLWEPAVSKHPKTRMTGHQQLVNHVY 376

Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD 427
           FSPDGQW+ASASFDKS+KLWNGTTGKFVA FRGHVGPVYQI                   
Sbjct: 377 FSPDGQWIASASFDKSVKLWNGTTGKFVAAFRGHVGPVYQI------------------- 417

Query: 428 MSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                   SWSADSRLLLSGSKDSTLKV
Sbjct: 418 --------SWSADSRLLLSGSKDSTLKV 437

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499531|ref|XP_003518593.1| PREDICTED: notchless protein homolog [Glycine max]

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/462 (81%), Positives = 395/462 (85%), Gaps = 34/462 (7%)

Query: 1   MEIETET-------TNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLP 53
           ME ETET        NNVMCLLTDP+G PLGAPMY PQNAGPQ L QIVNKLLNNEEKLP
Sbjct: 1   MEDETETMVEKREIINNVMCLLTDPDGTPLGAPMYLPQNAGPQHLIQIVNKLLNNEEKLP 60

Query: 54  YAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLS 113
           Y+FYISD ELLVPL +YL K+K SVEK L IV QPQA+FRIRPVNRC+ATI+GH EAVLS
Sbjct: 61  YSFYISDEELLVPLETYLLKNKASVEKALPIVCQPQAIFRIRPVNRCTATISGHAEAVLS 120

Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
           VAFSPDGRQLASGSGDT VR WDL TQTP++ CTGHKNWVL IAWS DGK+LVSGSK GE
Sbjct: 121 VAFSPDGRQLASGSGDTAVRFWDLTTQTPLYTCTGHKNWVLSIAWSPDGKYLVSGSKTGE 180

Query: 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV 233
           L CWDPQTGK  GNPL GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL+KCV
Sbjct: 181 LICWDPQTGKSLGNPLIGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLKKCV 240

Query: 234 ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293
           +CLSGHTLA+TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL+GHGHWVNSLALSTEY
Sbjct: 241 MCLSGHTLAITCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELRGHGHWVNSLALSTEY 300

Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
            LRTGAFDHTGKQYSSPEEMKK ALERY  ++GNAPERLVSGSDDFTMFLWEP ++K PK
Sbjct: 301 VLRTGAFDHTGKQYSSPEEMKKVALERYQAMRGNAPERLVSGSDDFTMFLWEPFINKHPK 360

Query: 354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413
           TRMTGHQQLVNHVYFSPDGQWVASASFDKS+KLWNGTTGKFV  FRGHVGPVYQI     
Sbjct: 361 TRMTGHQQLVNHVYFSPDGQWVASASFDKSVKLWNGTTGKFVTAFRGHVGPVYQI----- 415

Query: 414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                 SWSADSRLLLSGSKDSTLKV
Sbjct: 416 ----------------------SWSADSRLLLSGSKDSTLKV 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517757|ref|XP_004165911.1| PREDICTED: notchless protein homolog, partial [Cucumis sativus]

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/399 (89%), Positives = 377/399 (94%), Gaps = 1/399 (0%)

Query: 1   MEIE-TETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYIS 59
           M+IE  ETTNNVM LLTDPEG PLGAPMY PQNAGPQQL Q+VNKLL+NEEKLPYAFYIS
Sbjct: 5   MDIEHRETTNNVMILLTDPEGTPLGAPMYLPQNAGPQQLQQMVNKLLSNEEKLPYAFYIS 64

Query: 60  DHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPD 119
           D EL V LG+YLEK+KVSVEKVL++VYQPQAVFRIRPV+RCSATI+GH EAVLSV+FSPD
Sbjct: 65  DQELTVSLGAYLEKNKVSVEKVLTVVYQPQAVFRIRPVSRCSATISGHAEAVLSVSFSPD 124

Query: 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179
           GRQLASGSGDTTVRLWDLNTQTP+F CTGHKNWVL IAWS DGKHLVSGSKAGEL CWDP
Sbjct: 125 GRQLASGSGDTTVRLWDLNTQTPLFTCTGHKNWVLSIAWSPDGKHLVSGSKAGELFCWDP 184

Query: 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH 239
            TGKP GNPL+GHKKWITGISWEP+HL+APCRRFVS+SKDGDARIWDVSL+KCVICLSGH
Sbjct: 185 LTGKPLGNPLTGHKKWITGISWEPLHLSAPCRRFVSSSKDGDARIWDVSLKKCVICLSGH 244

Query: 240 TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
           TLA+TCVKWGGDGVIYTGSQDCTIKVWET QGKLIRELKGHGHWVNSLALSTEY LRTGA
Sbjct: 245 TLAITCVKWGGDGVIYTGSQDCTIKVWETKQGKLIRELKGHGHWVNSLALSTEYVLRTGA 304

Query: 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359
           FDHTGKQ+SSPEEMKK ALERYNK+KG+APERLVSGSDDFTMFLWEPAVSKQPK RMTGH
Sbjct: 305 FDHTGKQFSSPEEMKKVALERYNKMKGSAPERLVSGSDDFTMFLWEPAVSKQPKIRMTGH 364

Query: 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398
           QQLVNHVYFSPDGQWVASASFDKS+KLWNG TGKFVA F
Sbjct: 365 QQLVNHVYFSPDGQWVASASFDKSVKLWNGITGKFVAAF 403

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792623|ref|XP_002864196.1| hypothetical protein ARALYDRAFT_918330 [Arabidopsis lyrata subsp. lyrata] gi|297310031|gb|EFH40455.1| hypothetical protein ARALYDRAFT_918330 [Arabidopsis lyrata subsp. lyrata]

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/455 (74%), Positives = 390/455 (85%), Gaps = 28/455 (6%)

Query: 1   MEIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISD 60
           M ++T+    VMCLLTDPEG  LG+ MY PQNAGP QL+Q+VN+ L+NEE LPY+FY+SD
Sbjct: 1   MSMDTDEGKTVMCLLTDPEGTHLGSAMYIPQNAGPLQLTQLVNRFLDNEEMLPYSFYVSD 60

Query: 61  HELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDG 120
            ELLVP+G+YLEK+KVSVEKVL+IVYQ QAVFRIRPVNRCS TIAGH EAVL V+FSPDG
Sbjct: 61  EELLVPVGTYLEKNKVSVEKVLTIVYQQQAVFRIRPVNRCSQTIAGHAEAVLCVSFSPDG 120

Query: 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180
           +QLASGSGDTTVRLWDL T+TP+F C GHKNWVL +AWS DGKHLVSGSK+GE+ CW+P+
Sbjct: 121 KQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPK 180

Query: 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT 240
            G+  G+PL+GHKKWITGISWEPVHL++PCRRFV++SKDGDARIWD++L+K +ICLSGHT
Sbjct: 181 KGELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLSGHT 240

Query: 241 LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300
           LAVTCV+WGGDG+IYTGSQDCTIK+WETTQGKLIRELKGHGHW+NSLALSTEY LRTGAF
Sbjct: 241 LAVTCVQWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTEYVLRTGAF 300

Query: 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ 360
           DHTG+QY  P E K+ ALERYN+ KG++PERLVSGSDDFTMFLWEP+VSKQPK R+TGHQ
Sbjct: 301 DHTGRQY-PPNEEKQKALERYNQTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQ 359

Query: 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS 420
           QLVNHVYFSPDG+W+ASASFDKS++LWNG TG+FV  FRGHVGPVYQ+            
Sbjct: 360 QLVNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTTFRGHVGPVYQV------------ 407

Query: 421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                          SWSADSRLLLSGSKDSTLK+
Sbjct: 408 ---------------SWSADSRLLLSGSKDSTLKI 427

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
TAIR|locus:2176897	473	AT5G52820 "AT5G52820" [Arabido	0.888	0.856	0.788	1.8e-194
UNIPROTKB|Q9NVX2	485	NLE1 "Notchless protein homolo	0.859	0.808	0.577	1.7e-128
RGD|1308301	487	Nle1 "notchless homolog 1 (Dro	0.894	0.837	0.557	5.9e-128
UNIPROTKB|Q58D20	486	NLE1 "Notchless protein homolo	0.892	0.837	0.554	7.6e-128
MGI|MGI:2429770	485	Nle1 "notchless homolog 1 (Dro	0.890	0.837	0.559	9.6e-128
UNIPROTKB|I3LTI2	485	NLE1 "Uncharacterized protein"	0.859	0.808	0.572	5.3e-127
UNIPROTKB|F1NII4	498	NLE1 "Uncharacterized protein"	0.885	0.811	0.553	1.9e-124
DICTYBASE|DDB_G0295761	507	nle1 "putative notchless" [Dic	0.855	0.769	0.555	3.9e-124
UNIPROTKB|F1PUU2	436	NLE1 "Uncharacterized protein"	0.789	0.825	0.592	7.2e-123
FB|FBgn0021874	488	Nle "Notchless" [Drosophila me	0.890	0.831	0.515	8.2e-115

TAIR|locus:2176897 AT5G52820 "AT5G52820" [Arabidopsis thaliana (taxid:3702)]

 Score = 1810 (642.2 bits), Expect = 1.8e-194, Sum P(2) = 1.8e-194
 Identities = 320/406 (78%), Positives = 369/406 (90%)

Query:     3 IETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHE 62
             ++T+    VMCLLTDPEG  LG+ MY PQ AGP QL+Q+VN+ L+NEE LPY+FY+SD E
Sbjct:     4 MDTDEGKTVMCLLTDPEGTHLGSAMYIPQKAGPLQLTQLVNRFLDNEEMLPYSFYVSDEE 63

Query:    63 LLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQ 122
             LLVP+G+YLEK+KVSVEKVL+IVYQ QAVFRIRPVNRCS TIAGH EAVL V+FSPDG+Q
Sbjct:    64 LLVPVGTYLEKNKVSVEKVLTIVYQQQAVFRIRPVNRCSQTIAGHAEAVLCVSFSPDGKQ 123

Query:   123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
             LASGSGDTTVRLWDL T+TP+F C GHKNWVL +AWS DGKHLVSGSK+GE+ CW+P+ G
Sbjct:   124 LASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKKG 183

Query:   183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242
             +  G+PL+GHKKWITGISWEPVHL++PCRRFV++SKDGDARIWD++L+K +ICLSGHTLA
Sbjct:   184 ELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLSGHTLA 243

Query:   243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
             VTCVKWGGDG+IYTGSQDCTIK+WETTQGKLIRELKGHGHW+NSLALSTEY LRTGAFDH
Sbjct:   244 VTCVKWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTEYVLRTGAFDH 303

Query:   303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
             TG+QY  P E K+ ALERYNK KG++PERLVSGSDDFTMFLWEP+VSKQPK R+TGHQQL
Sbjct:   304 TGRQYP-PNEEKQKALERYNKTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQL 362

Query:   363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
             VNHVYFSPDG+W+ASASFDKS++LWNG TG+FV VFRGHVGPVYQ+
Sbjct:   363 VNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQV 408

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0051604 "protein maturation" evidence=RCA

UNIPROTKB|Q9NVX2 NLE1 "Notchless protein homolog 1" [Homo sapiens (taxid:9606)]

 Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
 Identities = 230/398 (57%), Positives = 288/398 (72%)

Query:    17 DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKV 76
             D  G  LG+P   P +  P +L  + N LL  E+ LP AF++ D E++  LG  LE   V
Sbjct:    23 DEGGQLLGSPFDVPVDITPDRLQLVCNALLAQEDPLPLAFFVHDAEIVSSLGKTLESQAV 82

Query:    77 SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
               EKVL I+YQPQA+FR+R V RC++++ GH+EAV+SVAFSP G+ LASGSGDTTVR WD
Sbjct:    83 ETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWD 142

Query:   137 LNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI 196
             L+T+TP F C GH++WVL I+WS DG+ L SG K G++  WDP TGK  G  L+GH KWI
Sbjct:   143 LSTETPHFTCKGHRHWVLSISWSPDGRKLASGCKNGQILLWDPSTGKQVGRTLAGHSKWI 202

Query:   197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT 256
             TG+SWEP+H N  CR   S+SKDG  RIWD +  +C   L+GHT +VTC++WGGDG++Y+
Sbjct:   203 TGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQSVTCLRWGGDGLLYS 262

Query:   257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS------SP 310
              SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+      +      S 
Sbjct:   263 ASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSL 322

Query:   311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370
             +E+K+ AL RYN ++G  PERLVSGSDDFT+FLW PA  K+P TRMTGHQ L+N V FSP
Sbjct:   323 QELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSP 382

Query:   371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
             D + VASASFDKSIKLW+G TGK++A  RGHV  VYQI
Sbjct:   383 DSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI 420

GO:0001826 "inner cell mass cell differentiation" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

RGD|1308301 Nle1 "notchless homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
 Identities = 233/418 (55%), Positives = 295/418 (70%)

Query:     1 MEIETETT-NNVMCLLT---DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAF 56
             +E+  E   ++V  LL    D  G  LG+P   P +  P QL  + N LL  +E LP AF
Sbjct:     5 VEVSDEAAASDVQRLLVQFQDEGGQLLGSPFDVPVDITPDQLQLVCNALLAQDEPLPLAF 64

Query:    57 YISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAF 116
             Y+ D E++  LG  LE   V  EK++ I+YQPQAVFR+R V RC++++ GH+EAV+SVAF
Sbjct:    65 YVHDAEIVSSLGKTLESQSVETEKIVDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAF 124

Query:   117 SPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176
             SP G+ LASGSGDTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  
Sbjct:   125 SPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQILL 184

Query:   177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL 236
             WDP TG   G  L+GH KWITG+SWEP+H+N  CR   S+SKDG  R+WD +  +C   L
Sbjct:   185 WDPSTGTQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCERIL 244

Query:   237 SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296
             +GHT +VTC++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALR
Sbjct:   245 TGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALR 304

Query:   297 TGAFD------HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350
             TGAF+      +      S +E+K+ A  RYN ++G  PERLVSGSDDFT+FLW PA  K
Sbjct:   305 TGAFEPAEATVNAQDLQGSLKELKERASSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDK 364

Query:   351 QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
             +P  RMTGHQ L+N V FSPD + VASASFDKSIKLW+G TGK++A  RGHV  VYQI
Sbjct:   365 KPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI 422

GO:0001826 "inner cell mass cell differentiation" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0007219 "Notch signaling pathway" evidence=IEA;ISO

UNIPROTKB|Q58D20 NLE1 "Notchless protein homolog 1" [Bos taurus (taxid:9913)]

 Score = 1255 (446.8 bits), Expect = 7.6e-128, P = 7.6e-128
 Identities = 229/413 (55%), Positives = 289/413 (69%)

Query:     2 EIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDH 61
             E  T     ++    D  G  LG+P   P +  P +L  + N LL  E+ LP AFY+ D 
Sbjct:     9 EAATRDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDA 68

Query:    62 ELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGR 121
             E++  LG  LE   V  EKVL I+YQPQA+FR+R V RC++++ GH+EAV+SVAFSP G+
Sbjct:    69 EIVSSLGRTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGK 128

Query:   122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181
              LASGSGDTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP T
Sbjct:   129 YLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPST 188

Query:   182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL 241
             GK  G  L+GH KWIT +SWEP+H N  CR   S+SKDG  R+WD +  +C   L+GH  
Sbjct:   189 GKQVGRALTGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERTLTGHAQ 248

Query:   242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
             +VTC++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+
Sbjct:   249 SVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFE 308

Query:   302 HTGKQYS------SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR 355
                   +      S +E+K+ AL RYN ++G  PERLVSGSDDFT+FLW PA  K+P  R
Sbjct:   309 PAEASVNAQDLRGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLAR 368

Query:   356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
             MTGHQ L+N V FSPD + +ASASFDKSIKLW+G TGK++A  RGHV  VYQI
Sbjct:   369 MTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI 421

GO:0005730 "nucleolus" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0001826 "inner cell mass cell differentiation" evidence=IEA

MGI|MGI:2429770 Nle1 "notchless homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 1254 (446.5 bits), Expect = 9.6e-128, P = 9.6e-128
 Identities = 232/415 (55%), Positives = 292/415 (70%)

Query:     3 IETETTNNVMCLLT---DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYIS 59
             +E     +V  LL    D  G  LG+P   P +  P +L  + N LL  EE LP AFY+ 
Sbjct:     6 VEEAAAGDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEEPLPLAFYVH 65

Query:    60 DHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPD 119
             D E++  LG  LE   V  EK++ I+YQPQAVFR+R V RC++++ GH+EAV+SVAFSP 
Sbjct:    66 DAEIVSSLGKTLESQSVETEKIVDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAFSPT 125

Query:   120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179
             G+ LASGSGDTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP
Sbjct:   126 GKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQVLLWDP 185

Query:   180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH 239
              TG   G  L+GH KWITG+SWEP+H+N  CR   S+SKDG  R+WD +  +C   L+GH
Sbjct:   186 STGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCERILTGH 245

Query:   240 TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
             T +VTC++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGA
Sbjct:   246 TQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGA 305

Query:   300 FD------HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
             F+      +      S +E+K+ A  RYN ++G  PERLVSGSDDFT+FLW PA  K+P 
Sbjct:   306 FEPAEATVNAQDLQGSLKELKERASSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPL 365

Query:   354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
              RMTGHQ L+N V FSPD + VASASFDKSIKLW+G TGK++A  RGHV  VYQI
Sbjct:   366 ARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI 420

GO:0001826 "inner cell mass cell differentiation" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IDA

UNIPROTKB|I3LTI2 NLE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
 Identities = 228/398 (57%), Positives = 285/398 (71%)

Query:    17 DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKV 76
             D  G  LG+P   P +  P +L  + N LL  E+ LP AFY+ D E++  LG  LE   V
Sbjct:    23 DEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDAEIISSLGKTLESQAV 82

Query:    77 SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
               EKVL I+YQPQAVFR+R V RC++++ GH+EAV+SVAFSP G+ LASGSGDTTVR WD
Sbjct:    83 ETEKVLDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWD 142

Query:   137 LNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI 196
             L+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP TGK  G  L+GH KWI
Sbjct:   143 LSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWI 202

Query:   197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT 256
             T +SWEP+H N  CR   S+SKDG  R+WD +  +C   L+GHT +VTC++WGGDG++Y+
Sbjct:   203 TALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYS 262

Query:   257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS------SP 310
              SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+      +      S 
Sbjct:   263 ASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVNAQDLRGSL 322

Query:   311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370
             +E+K+ AL RYN ++G   ERLVSGSDDFT+FLW PA  K+P  RMTGHQ L+N V FSP
Sbjct:   323 QELKERALSRYNLVRGRGLERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSP 382

Query:   371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
             D + +ASASFDKSIKLW+G TGK++A  RGHV  VYQI
Sbjct:   383 DSRIIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI 420

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001826 "inner cell mass cell differentiation" evidence=IEA

UNIPROTKB|F1NII4 NLE1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1223 (435.6 bits), Expect = 1.9e-124, P = 1.9e-124
 Identities = 227/410 (55%), Positives = 282/410 (68%)

Query:     5 TETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELL 64
             TE    ++    D  G PLG+P   P +  P +L  + N LL  +E +P AF+  D E++
Sbjct:    24 TEDVERLLIQFRDEAGEPLGSPFDVPVSITPDKLQLVCNALLQQDEPVPLAFFFHDAEIV 83

Query:    65 VPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLA 124
             V L   L    V  EKVL I+YQPQAVFR+R V RC++++ GHTEAV+SVAFSP G+ LA
Sbjct:    84 VSLEKTLAGQAVETEKVLDIIYQPQAVFRVRAVTRCTSSLEGHTEAVISVAFSPTGKYLA 143

Query:   125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184
             SGSGDTTVR WDL+T+TP F   GH++WVL IAWS DGK L SG K  ++  WDP TG  
Sbjct:   144 SGSGDTTVRFWDLSTETPQFTAKGHRHWVLSIAWSPDGKKLASGCKNSQIFLWDPATGNQ 203

Query:   185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT 244
              G  L+GH KWIT + WEP+H+N  CR   SASKDG  RIWD  + +C   L+GHT +VT
Sbjct:   204 IGRVLTGHSKWITCLCWEPLHINPECRYLASASKDGSIRIWDTLMGRCDKILTGHTQSVT 263

Query:   245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD--- 301
             CVKWGGDG++Y+ SQD TIKVW +  G L R L+GH HWVN++ALST+Y LRTGAF+   
Sbjct:   264 CVKWGGDGLLYSSSQDRTIKVWRSQDGILCRTLQGHAHWVNTMALSTDYVLRTGAFEPAE 323

Query:   302 ---HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
                +      S  E+K  A +RY+K++G  PERLVSGSDDFT+FLW PA  K+P  RMTG
Sbjct:   324 ATINPQDMSGSLAELKDKAQQRYDKVRGQGPERLVSGSDDFTLFLWRPAEDKKPLERMTG 383

Query:   359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
             HQ L+N V FSPD + +ASASFDKSIKLW G TGK++   RGHV  VYQI
Sbjct:   384 HQALINQVLFSPDTRIIASASFDKSIKLWEGRTGKYLTSLRGHVSAVYQI 433

GO:0001826 "inner cell mass cell differentiation" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

DICTYBASE|DDB_G0295761 nle1 "putative notchless" [Dictyostelium discoideum (taxid:44689)]

 Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
 Identities = 219/394 (55%), Positives = 292/394 (74%)

Query:    17 DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKV 76
             D E +  G P+   QN   +QL  ++N LLNN+E+LPY+F+++D E+   L ++LE   +
Sbjct:    51 DSENDTTGPPINISQNVTTEQLQMLINSLLNNDEQLPYSFFVNDQEITNNLKNHLEG--L 108

Query:    77 SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
             S E  LSI YQPQAVFR+RPV RC+++++GHTEAVL+ AFSPDG+   S  GDTTVR+WD
Sbjct:   109 SDETTLSIYYQPQAVFRVRPVTRCASSMSGHTEAVLNCAFSPDGKGFVSVGGDTTVRIWD 168

Query:   137 LNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI 196
             + T TP     GH NWVL +AWS D K + +    G+++ W PQTGK  G+ L GH K+I
Sbjct:   169 IYTSTPTHTLKGHTNWVLQVAWSPDSKKIATAGMEGDIRIWCPQTGKQLGSTLKGHTKFI 228

Query:   197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT 256
             TG+SWEP HLN  C R  S+SKD   RIWD    K ++ LSGHT++VTC+KWGG+G+IY+
Sbjct:   229 TGLSWEPFHLNPKCVRLASSSKDSTIRIWDTESCKNLMSLSGHTMSVTCLKWGGEGLIYS 288

Query:   257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316
             GSQD T++V+ TT G+L+R L GH HWVN+LAL+T+Y LRTG++DHTGK+Y + EE ++ 
Sbjct:   289 GSQDRTVRVFNTTDGRLVRVLDGHAHWVNTLALNTDYVLRTGSYDHTGKEYDTLEEAQRV 348

Query:   317 ALERYNKIKGNAP--ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW 374
             ALERYN +K  +   E L+SGSDDFT+ +W P+V+K   +R+TGHQQL+N V FSPDG++
Sbjct:   349 ALERYNDVKAKSKGMEILISGSDDFTVIMWNPSVTKTSISRLTGHQQLINLVSFSPDGRY 408

Query:   375 VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
              ASASFDKSIKLW+G +GKF+  FRGHVG VYQ+
Sbjct:   409 FASASFDKSIKLWDGQSGKFLGNFRGHVGAVYQV 442

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1PUU2 NLE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1208 (430.3 bits), Expect = 7.2e-123, P = 7.2e-123
 Identities = 217/366 (59%), Positives = 270/366 (73%)

Query:    49 EEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHT 108
             E+ LP AFY+ D E+   LG  LE   V  EKVL I+YQPQA+FR+R V RC++++ GH+
Sbjct:     6 EDPLPLAFYVHDAEITSSLGKTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHS 65

Query:   109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
             EAV+SVAFSP G+ LASGSGDTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG
Sbjct:    66 EAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKTLASG 125

Query:   169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
              K G++  WDP TGK  G  L+GH KWITG+SWEP+H N  CR   S+SKDG  R+WD +
Sbjct:   126 CKNGQILLWDPSTGKQVGRVLAGHSKWITGLSWEPLHANPECRYMASSSKDGSVRVWDTT 185

Query:   229 LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288
               +C   L+GHT +VTC++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++A
Sbjct:   186 AGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMA 245

Query:   289 LSTEYALRTGAFDHTGKQYS------SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342
             LST+YALRTGAF+      +      S +E+K  AL RYN ++G  PERLVSGSDDFT+F
Sbjct:   246 LSTDYALRTGAFEPAEASINAQDLQGSLQELKDRALRRYNLVRGQGPERLVSGSDDFTLF 305

Query:   343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402
             +W PA  K+P  RMTGHQ L+N V FSPD + +ASASFDKSIKLW+G TGK++A  RGHV
Sbjct:   306 MWSPAEDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGKYLASLRGHV 365

Query:   403 GPVYQI 408
               VYQI
Sbjct:   366 AAVYQI 371

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001826 "inner cell mass cell differentiation" evidence=IEA

FB|FBgn0021874 Nle "Notchless" [Drosophila melanogaster (taxid:7227)]

 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 214/415 (51%), Positives = 279/415 (67%)

Query:     2 EIETE---TTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYI 58
             E +TE   T + +   L    G   G P+  P     QQL  I N LL NEE  PY F++
Sbjct:    10 ETDTEQEATPHTIQARLVSDTGEEAGPPIDLPAGITTQQLGLICNALLKNEEATPYLFFV 69

Query:    59 SDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSP 118
              + E+   L   L+   V  E V+ IVYQPQAVF++RPV RC++++ GH EAV+S+ FSP
Sbjct:    70 GEDEIKKSLEDTLDLASVDTENVIDIVYQPQAVFKVRPVTRCTSSMPGHAEAVVSLNFSP 129

Query:   119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
             DG  LASGSGDTTVRLWDLNT+TP F CTGHK WVLC++W+ DGK L SG KAG +  WD
Sbjct:   130 DGAHLASGSGDTTVRLWDLNTETPHFTCTGHKQWVLCVSWAPDGKRLASGCKAGSIIIWD 189

Query:   179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238
             P+TG+  G PLSGHKK I  ++WEP H +  CR+  SAS DGD RIWDV L +C++ ++G
Sbjct:   190 PETGQQKGRPLSGHKKHINCLAWEPYHRDPECRKLASASGDGDCRIWDVKLGQCLMNIAG 249

Query:   239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
             HT AVT V+WGG G+IYT S+D T+K+W    G L R   GH HWVN++ALST+Y LRTG
Sbjct:   250 HTNAVTAVRWGGAGLIYTSSKDRTVKMWRAADGILCRTFSGHAHWVNNIALSTDYVLRTG 309

Query:   299 AF----DHTGKQYS-SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
              F    D +    S S EE++++AL+RY  +  +  E LVS SDD T++LW    +K  +
Sbjct:   310 PFHPVKDRSKSHLSLSTEELQESALKRYQAVCPDEVESLVSCSDDNTLYLWRNNQNKCVE 369

Query:   354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
              RMTGHQ +VN V +SPD + +ASASFDKS++LW  + G+++A FRGHV  VY +
Sbjct:   370 -RMTGHQNVVNDVKYSPDVKLIASASFDKSVRLWRASDGQYMATFRGHVQAVYTV 423

GO:0007219 "Notch signaling pathway" evidence=ISS;TAS

GO:0005112 "Notch binding" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLX9	NLE1_ARATH	No assigned EC number	0.7483	0.9320	0.8985	yes	no
Q5RFF8	NLE1_PONAB	No assigned EC number	0.5474	0.9210	0.8659	yes	no
Q9NVX2	NLE1_HUMAN	No assigned EC number	0.5391	0.9364	0.8804	yes	no
Q8VEJ4	NLE1_MOUSE	No assigned EC number	0.5408	0.9210	0.8659	yes	no
O74855	NLE1_SCHPO	No assigned EC number	0.4227	0.8859	0.8047	yes	no
Q58D20	NLE1_BOVIN	No assigned EC number	0.5361	0.9298	0.8724	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028735001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (477 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00038895001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (280 aa)				•	•		•		0.925
	GSVIVG00027646001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (526 aa)				•	•		•		0.875
	GSVIVG00026600001	SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (229 aa)				•	•				0.823
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•			•		0.806
	GSVIVG00019318001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_20, whole genome shotg [...] (245 aa)				•	•		•		0.796
	GSVIVG00018638001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)			•	•				•	0.780
	GSVIVG00013990001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (900 aa)			•	•	•		•	•	0.779
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•			•		0.764
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•			•		0.762
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•			•		0.761

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	456
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-76
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-50
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-47
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-47
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-39
pfam08154	64	pfam08154, NLE, NLE (NUC135) domain	2e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-15
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-11
smart00320	40	smart00320, WD40, WD40 repeats	2e-10
smart00320	40	smart00320, WD40, WD40 repeats	7e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-08
smart00320	40	smart00320, WD40, WD40 repeats	2e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	6e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	3e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	4e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	4e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	7e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	8e-04
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	0.001
pfam11768	544	pfam11768, DUF3312, Protein of unknown function (D	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  240 bits (615), Expect = 1e-76
 Identities = 118/357 (33%), Positives = 170/357 (47%), Gaps = 71/357 (19%)

Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
              T+ GHT  V  VAFSPDG+ LA+GSGD T+++WDL T   +    GH   V  +A S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 160 ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
           ADG +L SGS    ++ WD +TG+     L+GH  +++ +++ P       R   S+S+D
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECV-RTLTGHTSYVSSVAFSPDG-----RILSSSSRD 114

Query: 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK 278
              ++WDV   KC+  L GHT  V  V +  DG  + + SQD TIK+W+   GK +  L 
Sbjct: 115 KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT 174

Query: 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338
           GH   VNS+           AF   G+                         +L+S S D
Sbjct: 175 GHTGEVNSV-----------AFSPDGE-------------------------KLLSSSSD 198

Query: 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398
            T+ LW+ +  K   T + GH+  VN V FSPDG  +AS S D +I++W+  TG+ V   
Sbjct: 199 GTIKLWDLSTGKCLGT-LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257

Query: 399 RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
            GH   V  +                           +WS D + L SGS D T+++
Sbjct: 258 SGHTNSVTSL---------------------------AWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  171 bits (436), Expect = 4e-50
 Identities = 79/213 (37%), Positives = 120/213 (56%), Gaps = 8/213 (3%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
             C  T+ GHT  V SVAFSPDGR L+S S D T+++WD+ T   +    GH +WV  +A
Sbjct: 83  GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142

Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
           +S DG  + S S+ G ++ WD +TGK     L+GH   +  +++ P        + +S+S
Sbjct: 143 FSPDGTFVASSSQDGTIKLWDLRTGKCVAT-LTGHTGEVNSVAFSP-----DGEKLLSSS 196

Query: 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT-GSQDCTIKVWETTQGKLIRE 276
            DG  ++WD+S  KC+  L GH   V  V +  DG +   GS+D TI+VW+   G+ ++ 
Sbjct: 197 SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256

Query: 277 LKGHGHWVNSLALSTEY-ALRTGAFDHTGKQYS 308
           L GH + V SLA S +   L +G+ D T + + 
Sbjct: 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  165 bits (419), Expect = 1e-47
 Identities = 71/173 (41%), Positives = 100/173 (57%), Gaps = 7/173 (4%)

Query: 96  PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
              +C  T+ GHT+ V SVAFSPDG  +AS S D T++LWDL T   +   TGH   V  
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182

Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
           +A+S DG+ L+S S  G ++ WD  TGK  G  L GH+  +  +++ P           S
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG-TLRGHENGVNSVAFSPDGYL-----LAS 236

Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE 267
            S+DG  R+WD+   +CV  LSGHT +VT + W  DG  + +GS D TI++W+
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  169 bits (427), Expect = 2e-47
 Identities = 107/320 (33%), Positives = 164/320 (51%), Gaps = 19/320 (5%)

Query: 91  VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTPMFKCTGH 149
           ++ +    +   T+ GH+E+V S+AFSPDG+ LASGS  D T++LWDL T  P+    GH
Sbjct: 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH 197

Query: 150 KNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA 208
            + V  +A+S DG   + SGS  G ++ WD  TGK   + LSGH   +   S+ P     
Sbjct: 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV-SSFSPDG--- 253

Query: 209 PCRRFVSASKDGDARIWDV-SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
                 S S DG  R+WD+ S    +  LSGH+ +V  V +  DG ++ +GS D T+++W
Sbjct: 254 --SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Query: 267 ETTQGKLIRELK--GHGHWVNSLALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +   GKL+  L   GH   V+SL+ S +    +  G+ D T + +          LE ++
Sbjct: 312 DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371

Query: 323 KIKG----NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378
            +           + SGS D T+ LW+ +     +  + GH   V  + FSPDG+ +AS 
Sbjct: 372 NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR-NLDGHTSRVTSLDFSPDGKSLASG 430

Query: 379 SFDKSIKLWNGTTGKFVAVF 398
           S D +I+LW+  T      F
Sbjct: 431 SSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  148 bits (373), Expect = 1e-39
 Identities = 112/381 (29%), Positives = 174/381 (45%), Gaps = 68/381 (17%)

Query: 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAW 158
           S  + GH +++ S+AFSPDG  L SGS D T++LWDL+    + K     H + V  +A 
Sbjct: 58  SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117

Query: 159 -SADGKHLVSGSKA--GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
            S DG  ++  S +  G ++ WD  T       L GH + +T +++ P            
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL----ASG 173

Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY--TGSQDCTIKVWETTQGKL 273
           +S DG  ++WD+   K +  L+GHT  V+ + +  DG +   +GS D TI++W+ + GKL
Sbjct: 174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Query: 274 IR-ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332
           +R  L GH   V S            +F   G                           L
Sbjct: 234 LRSTLSGHSDSVVS------------SFSPDGS-------------------------LL 256

Query: 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392
            SGS D T+ LW+   S      ++GH   V  V FSPDG+ +AS S D +++LW+  TG
Sbjct: 257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316

Query: 393 KFVAVFR--GHVGPVYQIRFE----------------LIYCFRYPSNFYCVVDMSCCMSL 434
           K ++     GH GPV  + F                  ++  R       +   S  +S+
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSV 376

Query: 435 YSWSADSRLLLSGSKDSTLKV 455
            S+S D R++ SGS D T+++
Sbjct: 377 -SFSPDGRVVSSGSTDGTVRL 396

Length = 466

>gnl|CDD|219730 pfam08154, NLE, NLE (NUC135) domain

 Score = 76.0 bits (188), Expect = 2e-17
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 11 VMCLLTDPEGNP--LGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLG 68
          V       EG+    G P   P N     LS+++N+LL NEE +P+ F I+  EL   L 
Sbjct: 2  VQVQFVTEEGDYEVPGTPFLVPTNLTRDGLSELLNQLLENEEPVPFDFLINGEELRTSLD 61

Query: 69 SYL 71
           YL
Sbjct: 62 EYL 64

This domain is located N terminal to WD40 repeats. It is found in the microtubule-associated yeast protein YTM1. Length = 64

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 77.4 bits (189), Expect = 3e-15
 Identities = 53/140 (37%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
             S T+ GH   V S++FSPDG  L SG S D T+RLWDL T  P+    GH N VL ++
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVS 377

Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
           +S DG+ + SGS  G ++ WD  TG    N L GH   +T + + P       +   S S
Sbjct: 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRN-LDGHTSRVTSLDFSPD-----GKSLASGS 431

Query: 218 KDGDARIWDVSLRKCVICLS 237
            D   R+WD+      +  S
Sbjct: 432 SDNTIRLWDLKTSLKSVSFS 451

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 56.2 bits (136), Expect = 9e-11
 Identities = 24/38 (63%), Positives = 27/38 (71%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
           +   T+ GHT  V SVAFSPDG  LASGS D TVR+WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 23/38 (60%), Positives = 27/38 (71%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
               T+ GHT  V SVAFSPDG+ LASGS D T++LWD
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
           S +    + GH   V  V FSPDG+++AS S D +IKLW+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.7 bits (114), Expect = 8e-08
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
            +    + GH   V  V FSPDG  +AS S D ++++W+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 139 TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
           +   +    GH   V  +A+S DGK+L SGS  G ++ WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
             +    GH   V  +A+S DG  L SGS  G ++ WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 230 RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE 267
            + +  L GHT  VT V +  DG  + +GS D TIK+W+
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 230 RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
            K +  L GHT  VT V +  DG ++ +GS D T++VW
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTE--YALRTGAFDHTGKQYSSPEEMKKAA 317
           +  ++VW+  + +L+ E+K H   V S+  S+     L +G+ D + K +S  + +    
Sbjct: 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613

Query: 318 LERYNKI-----KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372
           ++    I        +   L  GS D  ++ ++    K P   M GH + V++V F  D 
Sbjct: 614 IKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS 672

Query: 373 QWVASASFDKSIKLWN 388
             + S+S D ++KLW+
Sbjct: 673 STLVSSSTDNTLKLWD 688

Length = 793

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 22/173 (12%)

Query: 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364
           +  S   +  +      +    +             +     ++       + GH+  + 
Sbjct: 10  ENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSIT 69

Query: 365 HVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRG-HVGPVYQIRF------ELIYCF 416
            + FSPDG+ + S S D +IKLW+   G K +    G H   V ++         ++   
Sbjct: 70  SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129

Query: 417 RYPSNFYCVVDMSCCMSL-------------YSWSADSRLLLSGS-KDSTLKV 455
                   + D+S    L              ++S D +LL SGS  D T+K+
Sbjct: 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 45.1 bits (106), Expect = 6e-05
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 16/169 (9%)

Query: 107 HTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-GKH 164
           H + V S+ +S  D   LASGS D +V+LW +N    +       N + C+ + ++ G+ 
Sbjct: 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRS 632

Query: 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224
           L  GS   ++  +D +  K     + GH K ++ + +            VS+S D   ++
Sbjct: 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF------VDSSTLVSSSTDNTLKL 686

Query: 225 WDVSLRKCVI------CLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVW 266
           WD+S+    I         GHT     V     DG I TGS+   + V+
Sbjct: 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVY 735

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%)

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226
           L GH   +T +++ P           S S DG  R+WD
Sbjct: 7   LKGHTGPVTSVAFSPDG-----NLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 5/38 (13%)

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226
           L GH   +T +++ P       +   S S DG  ++WD
Sbjct: 8   LKGHTGPVTSVAFSPDG-----KYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 40/129 (31%)

Query: 104 IAGHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
           + GHT ++L + F+P   + LASGS D T+R+W++       K                 
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----------------- 112

Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
                     E++  DPQ        L GHKK I+ I W P++    C    S+  D   
Sbjct: 113 ----------EIK--DPQC------ILKGHKKKISIIDWNPMNYYIMC----SSGFDSFV 150

Query: 223 RIWDVSLRK 231
            IWD+   K
Sbjct: 151 NIWDIENEK 159

Length = 568

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)

Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN------TQTPMFKCTGHKNWVLCI 156
           T+ GH++ V  V F  D   L S S D T++LWDL+       +TP+    GH N    +
Sbjct: 656 TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714

Query: 157 AWSADGKHLVSGSKAGEL 174
             S    ++ +GS+  E+
Sbjct: 715 GLSVSDGYIATGSETNEV 732

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 106 GHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH 164
           GHT+ V  V+F P     LAS   D  V +WD+     +     H + +  + W+ DG  
Sbjct: 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182

Query: 165 LVSGSKAGELQCWDPQTGK 183
           L + SK  +L   DP+ G 
Sbjct: 183 LCTTSKDKKLNIIDPRDGT 201

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 64/284 (22%), Positives = 116/284 (40%), Gaps = 40/284 (14%)

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVK 247
           L+   K ++GI W     N+  +  V++S  +G  ++WDV+  + V  +  H   V  + 
Sbjct: 529 LASRSK-LSGICW-----NSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSID 582

Query: 248 WGG--DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY--ALRTGAFDHT 303
           +      ++ +GS D ++K+W   QG  I  +K   + +  +   +E   +L  G+ DH 
Sbjct: 583 YSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADH- 640

Query: 304 GKQYSSPEEMKKAAL-------ERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-----KQ 351
            K Y       K  L       +  + ++      LVS S D T+ LW+ ++S     + 
Sbjct: 641 -KVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINET 699

Query: 352 PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
           P     GH  + N V  S    ++A+ S           T +     +    PV   +F+
Sbjct: 700 PLHSFMGHTNVKNFVGLSVSDGYIATGS----------ETNEVFVYHKAFPMPVLSYKFK 749

Query: 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
            I     P +   V D S  +S   W   S  L++ +    +K+
Sbjct: 750 TI----DPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKI 789

Length = 793

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 24/156 (15%)

Query: 122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQ 180
           Q+AS + +  V++WD+     + +   H+  V  I +S AD   L SGS  G ++ W   
Sbjct: 547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606

Query: 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS------ASKDGDARIWDVSLR--KC 232
            G                I       N  C +F S      A    D +++   LR  K 
Sbjct: 607 QG--------------VSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL 652

Query: 233 VIC-LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWE 267
            +C + GH+  V+ V++     + + S D T+K+W+
Sbjct: 653 PLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWD 688

Length = 793

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 108 TEAVLSVAFSPDGRQLA---SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH 164
            E +LS A+SPDG++LA     SG   + + DL T     K           A+S DG  
Sbjct: 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSK 247

Query: 165 L-VSGSKAGELQ 175
           L VS SK G   
Sbjct: 248 LAVSLSKDGNPD 259

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

>gnl|CDD|204739 pfam11768, DUF3312, Protein of unknown function (DUF3312)

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSGS 169
           V S A SPD  +L  G  D+++ L+D +   T + +     +    IAW  D   ++  +
Sbjct: 261 VCSCARSPDEEKLLLGCIDSSLVLYDEHRGVTLLAQAAVIPHL---IAWHPDSAIVLVAN 317

Query: 170 KAGELQCWD 178
           + GELQC+D
Sbjct: 318 EQGELQCFD 326

This is a eukaryotic family of uncharacterized proteins. This family shows similarity to WD40 repeat proteins. Length = 544

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	456
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0301	745	consensus Phospholipase A2-activating protein (con	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG1539	910	consensus WD repeat protein [General function pred	99.98
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.97
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG1273	405	consensus WD40 repeat protein [General function pr	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG4227	609	consensus WD40 repeat protein [General function pr	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.92
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.92
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG1188	376	consensus WD40 repeat protein [General function pr	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.89
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.89
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.88
KOG0649	325	consensus WD40 repeat protein [General function pr	99.88
KOG1334	559	consensus WD40 repeat protein [General function pr	99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.87
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.87
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.86
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.85
KOG1188	376	consensus WD40 repeat protein [General function pr	99.85
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.84
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
KOG1963	792	consensus WD40 repeat protein [General function pr	99.84
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.83
PRK11028	330	6-phosphogluconolactonase; Provisional	99.83
KOG1310	758	consensus WD40 repeat protein [General function pr	99.83
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.81
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.79
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.78
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG1963	792	consensus WD40 repeat protein [General function pr	99.77
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.77
KOG1334	559	consensus WD40 repeat protein [General function pr	99.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.75
PRK01742	429	tolB translocation protein TolB; Provisional	99.75
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.75
KOG2321	703	consensus WD40 repeat protein [General function pr	99.74
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.74
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.73
KOG2139	445	consensus WD40 repeat protein [General function pr	99.72
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.71
KOG1310	758	consensus WD40 repeat protein [General function pr	99.71
PRK03629	429	tolB translocation protein TolB; Provisional	99.71
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.7
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.69
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.69
PRK04922	433	tolB translocation protein TolB; Provisional	99.67
PRK02889	427	tolB translocation protein TolB; Provisional	99.67
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.66
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.66
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.65
KOG2315	566	consensus Predicted translation initiation factor	99.65
PRK03629	429	tolB translocation protein TolB; Provisional	99.65
KOG2139	445	consensus WD40 repeat protein [General function pr	99.65
PRK05137	435	tolB translocation protein TolB; Provisional	99.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.63
PRK02889	427	tolB translocation protein TolB; Provisional	99.62
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.62
PRK04922	433	tolB translocation protein TolB; Provisional	99.61
PRK05137	435	tolB translocation protein TolB; Provisional	99.59
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.59
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.59
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.58
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.58
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.55
KOG2314	698	consensus Translation initiation factor 3, subunit	99.55
PRK00178	430	tolB translocation protein TolB; Provisional	99.52
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.52
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.51
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.51
PRK04792	448	tolB translocation protein TolB; Provisional	99.51
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.49
PRK00178	430	tolB translocation protein TolB; Provisional	99.48
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.47
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.47
KOG4547	541	consensus WD40 repeat-containing protein [General	99.45
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.45
KOG4547	541	consensus WD40 repeat-containing protein [General	99.45
PRK04792	448	tolB translocation protein TolB; Provisional	99.44
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.42
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.41
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.41
PRK01029	428	tolB translocation protein TolB; Provisional	99.41
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.39
PRK01029	428	tolB translocation protein TolB; Provisional	99.39
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.39
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.38
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.38
KOG2321	703	consensus WD40 repeat protein [General function pr	99.37
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.37
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.36
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.36
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.32
COG4946	668	Uncharacterized protein related to the periplasmic	99.32
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.3
KOG2315	566	consensus Predicted translation initiation factor	99.3
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.28
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.27
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.26
PF08154	65	NLE: NLE (NUC135) domain; InterPro: IPR012972 This	99.25
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.24
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.22
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.22
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.21
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.18
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.17
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.16
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.15
COG4946	668	Uncharacterized protein related to the periplasmic	99.15
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.14
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.11
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.1
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.09
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.09
PRK04043	419	tolB translocation protein TolB; Provisional	99.08
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.07
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.06
KOG2314	698	consensus Translation initiation factor 3, subunit	99.04
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.03
PRK04043	419	tolB translocation protein TolB; Provisional	99.02
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.01
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.0
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.98
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.95
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.95
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.95
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.93
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.9
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.88
KOG2695	425	consensus WD40 repeat protein [General function pr	98.86
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.85
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.82
KOG2695	425	consensus WD40 repeat protein [General function pr	98.82
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.76
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.74
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.74
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.7
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.66
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.64
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.64
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.63
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.62
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.62
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.61
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.61
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.6
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.6
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.59
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.56
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.54
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.53
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.45
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.44
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.43
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.42
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.42
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.4
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.37
KOG3621	726	consensus WD40 repeat-containing protein [General	98.36
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.35
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.33
PRK02888	635	nitrous-oxide reductase; Validated	98.3
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.2
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.2
KOG3621	726	consensus WD40 repeat-containing protein [General	98.17
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.16
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.12
PRK02888	635	nitrous-oxide reductase; Validated	98.07
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.07
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.06
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.05
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.05
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.04
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.04
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.04
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.03
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.0
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.99
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.98
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.98
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.93
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.93
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.92
COG3391	381	Uncharacterized conserved protein [Function unknow	97.9
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.85
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.82
PRK13616	591	lipoprotein LpqB; Provisional	97.79
KOG2444	238	consensus WD40 repeat protein [General function pr	97.77
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.7
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.69
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.65
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.61
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.59
COG3391	381	Uncharacterized conserved protein [Function unknow	97.58
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.57
PHA02713	557	hypothetical protein; Provisional	97.57
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.54
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.49
KOG2395	644	consensus Protein involved in vacuole import and d	97.43
KOG2444	238	consensus WD40 repeat protein [General function pr	97.41
KOG2395	644	consensus Protein involved in vacuole import and d	97.41
PRK13616	591	lipoprotein LpqB; Provisional	97.37
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.32
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.28
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.25
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.2
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.1
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.08
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.06
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.94
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.87
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.87
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.86
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.85
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.77
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.66
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.63
PRK10115	686	protease 2; Provisional	96.6
PHA02713	557	hypothetical protein; Provisional	96.58
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.42
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.39
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.27
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	96.26
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.24
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.98
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.94
PRK13684	334	Ycf48-like protein; Provisional	95.93
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.85
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.84
PHA03098	534	kelch-like protein; Provisional	95.83
PHA03098	534	kelch-like protein; Provisional	95.81
COG5167	776	VID27 Protein involved in vacuole import and degra	95.68
COG3292	671	Predicted periplasmic ligand-binding sensor domain	95.65
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.53
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.43
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.41
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.28
PRK10115	686	protease 2; Provisional	95.23
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.2
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.19
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.14
PHA02790	480	Kelch-like protein; Provisional	95.14
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.11
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.06
COG5167	776	VID27 Protein involved in vacuole import and degra	94.92
PHA02790	480	Kelch-like protein; Provisional	94.82
KOG2247	615	consensus WD40 repeat-containing protein [General	94.81
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.75
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.74
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.73
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.68
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.68
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.59
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.44
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.31
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.25
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.21
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.02
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.95
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.82
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.47
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.41
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.32
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.25
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.23
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.0
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.79
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.75
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	92.62
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.43
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.32
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.09
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.04
KOG2247	615	consensus WD40 repeat-containing protein [General	91.95
PRK13684	334	Ycf48-like protein; Provisional	91.89
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.88
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	91.58
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.24
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.23
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.07
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.18
PF14727	418	PHTB1_N: PTHB1 N-terminus	89.84
PF12768	281	Rax2: Cortical protein marker for cell polarity	89.7
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.61
COG5276	370	Uncharacterized conserved protein [Function unknow	89.38
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.14
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	88.89
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	88.44
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.39
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	88.36
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.12
COG4590	733	ABC-type uncharacterized transport system, permeas	88.02
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.02
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	87.98
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.55
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.44
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	85.73
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	85.54
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	85.21
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	84.79
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	84.67
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	84.53
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	84.48
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	84.4
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.27
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	84.03
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	82.94
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	82.9
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	82.59
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	82.45
COG5276	370	Uncharacterized conserved protein [Function unknow	82.2
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	82.01
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	81.82
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	81.57
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	81.38
PLN02153	341	epithiospecifier protein	81.09
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	80.94
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	80.49
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	80.32

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.1e-83  Score=524.48  Aligned_cols=429  Identities=62%  Similarity=1.094  Sum_probs=414.9

Q ss_pred             CCccccCc-ceEEEEEEC---CCCCCCCCcEEeeCCCCHHHHHHHHHHhhcC-CCCCceeEEecCeeeeechhhhHhhcC
Q 012799            1 MEIETETT-NNVMCLLTD---PEGNPLGAPMYFPQNAGPQQLSQIVNKLLNN-EEKLPYAFYISDHELLVPLGSYLEKHK   75 (456)
Q Consensus         1 ~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (456)
                      ||.+.+++ .+|++.|+.   ..+.....++.+|....+.+|..++|+|+.+ ++++||.|+..+.++..+|++.+.+..
T Consensus         3 ~~~~~~~~~~~i~~~l~~~~~d~g~~~g~~~~vp~~is~~qL~~l~n~ll~~s~dp~pysf~v~~~ei~~~l~~tL~~~~   82 (480)
T KOG0271|consen    3 MESIDPAELVTIPLLLVSVATDTGENEGSALLVPGDISTLQLELLCNQLLGNSDDPVPYSFFVTEIEILDSLETTLEKQN   82 (480)
T ss_pred             cccccccccccchhhcccccCCcccccCCceeccccCCHHHHHHHHHHHhhcccCCcceEEEecchHHHHHHHHHHhhcc
Confidence            56666644 888888876   5678888999999999999999999999988 899999999999999999999999999


Q ss_pred             cCcccEEEEEEeccceEEEeecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEE
Q 012799           76 VSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC  155 (456)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~  155 (456)
                      +++|..+.+.|+|+++++++|..+|...+.||.++|.|++|+|+|..||+|+.|.++++||+.+..+.+++++|...|.|
T Consensus        83 v~te~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlc  162 (480)
T KOG0271|consen   83 VSTEDVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLC  162 (480)
T ss_pred             cchhheeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 012799          156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC  235 (456)
Q Consensus       156 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  235 (456)
                      ++|+|||+.||+|+.||+|++||.++|++....+.+|...|++++|.|.+..+.+++|++++.||.|+|||+..++++..
T Consensus       163 vawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~  242 (480)
T KOG0271|consen  163 VAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT  242 (480)
T ss_pred             EEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHH
Q 012799          236 LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (456)
Q Consensus       236 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (456)
                      +.+|..+|+|+.|..+|++++|+.|++|++|+...|++.+++++|...|+.++.+.++.+..+.+++.+.......+.+.
T Consensus       243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~  322 (480)
T KOG0271|consen  243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK  322 (480)
T ss_pred             eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             HHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  395 (456)
                      ....++.......++.+++|++|+++.+|+.....+++..+.+|...|+.+.||||++++|+++-|..|++||.++|+.+
T Consensus       323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l  402 (480)
T KOG0271|consen  323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL  402 (480)
T ss_pred             HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh
Confidence            99999999999999999999999999999988888899999999999999999999999999999999999999999999


Q ss_pred             EEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       396 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .+|++|.++|+.+                           +|+.|.++|++||.|.+++||
T Consensus       403 asfRGHv~~VYqv---------------------------awsaDsRLlVS~SkDsTLKvw  436 (480)
T KOG0271|consen  403 ASFRGHVAAVYQV---------------------------AWSADSRLLVSGSKDSTLKVW  436 (480)
T ss_pred             hhhhhccceeEEE---------------------------EeccCccEEEEcCCCceEEEE
Confidence            9999999999999                           999999999999999999999

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=7.7e-55  Score=358.55  Aligned_cols=369  Identities=30%  Similarity=0.488  Sum_probs=320.7

Q ss_pred             cceEEEEEECC--CCCCCCCcEEeeCCCCHHHHHHHHHHhhcCC----CCCceeEEecCeeeeechhhhHhhcCcCcccE
Q 012799            8 TNNVMCLLTDP--EGNPLGAPMYFPQNAGPQQLSQIVNKLLNNE----EKLPYAFYISDHELLVPLGSYLEKHKVSVEKV   81 (456)
Q Consensus         8 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (456)
                      ..||++.|+|+  .+++|+.|+++|++.++.+|++++|+|+..+    .+.||+|++.++.++.+|.+++.++++++|.+
T Consensus         5 ~~qvqvrF~Tk~e~~aVpD~p~~iP~~~~r~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~~   84 (423)
T KOG0313|consen    5 SGQVQVRFFTKNEDYAVPDVPFAIPTSVERYGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSEEI   84 (423)
T ss_pred             cceEEEEEEecccccCCCCcceeccCcceEccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChhhe
Confidence            48999999987  5899999999999999999999999999988    78999999999999999999999999999999


Q ss_pred             EEEEEeccceEEEeecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC
Q 012799           82 LSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD  161 (456)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  161 (456)
                      +.|+|...    + ++.+..+. --|.+.|.++...  ++++++|++||.+++||.. |+....+.+|.++|.+++|.-.
T Consensus        85 leIEYv~~----~-~aP~pl~~-~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~  155 (423)
T KOG0313|consen   85 LEIEYVEA----I-TAPKPLQC-FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIK  155 (423)
T ss_pred             eEEEEEEe----c-CCCCcccc-ccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEec
Confidence            99999632    1 11112222 2499999999988  7899999999999999965 8889999999999998888643


Q ss_pred             ---CCEEEEEeCCCeEEEEeCCCCCCccc---cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC-------
Q 012799          162 ---GKHLVSGSKAGELQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-------  228 (456)
Q Consensus       162 ---~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-------  228 (456)
                         ...+++++.|.++++|.++.+.....   .-.+|...|.++...+     ++..+++|+.|.+|.+|+..       
T Consensus       156 n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-----sgtr~~SgS~D~~lkiWs~~~~~~~~~  230 (423)
T KOG0313|consen  156 NSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-----SGTRFCSGSWDTMLKIWSVETDEEDEL  230 (423)
T ss_pred             CCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-----CCCeEEeecccceeeecccCCCccccc
Confidence               33699999999999999988764321   2348999999999888     99999999999999999932       


Q ss_pred             ------------------CCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEec
Q 012799          229 ------------------LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS  290 (456)
Q Consensus       229 ------------------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  290 (456)
                                        ++.++..+.+|..+|.++.|++.+.+++++.|.+|+.||+.++....++. .+..++++..+
T Consensus       231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~  309 (423)
T KOG0313|consen  231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYS  309 (423)
T ss_pred             cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeee-cCcceeEeecc
Confidence                              23456778899999999999997799999999999999999999888887 45668999998


Q ss_pred             CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC--CCccccccccccEeEEEE
Q 012799          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQLVNHVYF  368 (456)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~  368 (456)
                      |.                                    ..+|++|+.|..+++||++++.  .....+.+|.+.|.++.|
T Consensus       310 ~~------------------------------------~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkw  353 (423)
T KOG0313|consen  310 PL------------------------------------SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKW  353 (423)
T ss_pred             cc------------------------------------cceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheec
Confidence            87                                    4569999999999999998765  345677899999999999


Q ss_pred             CCCCC-EEEEEECCCcEEEEeCCCCe-EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEE
Q 012799          369 SPDGQ-WVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS  446 (456)
Q Consensus       369 sp~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s  446 (456)
                      +|... .|++|+.||++++||+++.+ ++..+.+|.+.|.++                           .|+ ++..+++
T Consensus       354 sp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v---------------------------dW~-~~~~IvS  405 (423)
T KOG0313|consen  354 SPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV---------------------------DWN-EGGLIVS  405 (423)
T ss_pred             CCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEE---------------------------ecc-CCceEEe
Confidence            99655 59999999999999999977 899999999999999                           776 4679999


Q ss_pred             eeCCCceEE
Q 012799          447 GSKDSTLKV  455 (456)
Q Consensus       447 ~s~Dg~v~i  455 (456)
                      ||.|.+|+|
T Consensus       406 GGaD~~l~i  414 (423)
T KOG0313|consen  406 GGADNKLRI  414 (423)
T ss_pred             ccCcceEEE
Confidence            999999997

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-53  Score=350.56  Aligned_cols=312  Identities=32%  Similarity=0.532  Sum_probs=282.2

Q ss_pred             cCcCcccEEEEEEeccc----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc
Q 012799           74 HKVSVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT  141 (456)
Q Consensus        74 ~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~  141 (456)
                      ...+.++++.+.|.|+.          .+++|+.  ....++.++|...|.|++|+|||+.||+|+.||+|++||..+++
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~  190 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ  190 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence            45588999999999943          5677754  34678899999999999999999999999999999999999887


Q ss_pred             ce-eEEecCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEE
Q 012799          142 PM-FKCTGHKNWVLCIAWSA-----DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS  215 (456)
Q Consensus       142 ~~-~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~  215 (456)
                      ++ ..+.+|...|++++|.|     ..++||+++.||.|+|||+..+..+. .+.+|...|+|++|--      ..++++
T Consensus       191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~-~lsgHT~~VTCvrwGG------~gliyS  263 (480)
T KOG0271|consen  191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR-TLSGHTASVTCVRWGG------EGLIYS  263 (480)
T ss_pred             cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE-EeccCccceEEEEEcC------CceEEe
Confidence            65 56899999999999986     57799999999999999999888776 7899999999999963      468999


Q ss_pred             EeCCCcEEEEECCCCeEEEEecCcCccEEEEEeC-----------CCC--------------------------eEEEEe
Q 012799          216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-----------GDG--------------------------VIYTGS  258 (456)
Q Consensus       216 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-----------~~~--------------------------~l~~~~  258 (456)
                      |+.|++|++|+...+.+...+++|...|+.++.+           |.+                          .+++|+
T Consensus       264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs  343 (480)
T KOG0271|consen  264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS  343 (480)
T ss_pred             cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence            9999999999999999999999999999999886           111                          499999


Q ss_pred             CCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799          259 QDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (456)
Q Consensus       259 ~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (456)
                      .|.++.+|+.... +++..+.+|..-|+.+.|+|+                                    +.++++++.
T Consensus       344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd------------------------------------~r~IASaSF  387 (480)
T KOG0271|consen  344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD------------------------------------GRYIASASF  387 (480)
T ss_pred             CCceEEEecccccccchhhhhchhhheeeEEECCC------------------------------------ccEEEEeec
Confidence            9999999997654 578888999999999999999                                    667999999


Q ss_pred             CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeec
Q 012799          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (456)
Q Consensus       338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  417 (456)
                      |..|++||.++++ .+..+.+|-..|..++|+.|.++|++|+.|.++++||+++.++...+.+|.+.|.++         
T Consensus       388 DkSVkLW~g~tGk-~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~v---------  457 (480)
T KOG0271|consen  388 DKSVKLWDGRTGK-FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAV---------  457 (480)
T ss_pred             ccceeeeeCCCcc-hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEE---------
Confidence            9999999977654 667789999999999999999999999999999999999999999999999999999         


Q ss_pred             CCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                        .|+|||..+++|+.|..+++|
T Consensus       458 ------------------DwspDG~rV~sggkdkv~~lw  478 (480)
T KOG0271|consen  458 ------------------DWSPDGQRVASGGKDKVLRLW  478 (480)
T ss_pred             ------------------EecCCCceeecCCCceEEEee
Confidence                              999999999999999999999

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.5e-52  Score=348.31  Aligned_cols=281  Identities=27%  Similarity=0.477  Sum_probs=268.5

Q ss_pred             CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCC
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQCWDPQTGK  183 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~  183 (456)
                      |-+.+|..+.|++|++.||||+.+|.++||+..+...+.++.+|...|.++.|+|.  +..+|+|+.||++++|++.+..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            67889999999999999999999999999999999999999999999999999996  6799999999999999999877


Q ss_pred             CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCc
Q 012799          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT  262 (456)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~  262 (456)
                      ++. .+.+|...|..++|+|     +|++|++++.|.+-++||++++..+....+|...|.+++|.++| .+++|+.|..
T Consensus       253 ~l~-~l~gH~~RVs~VafHP-----sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~  326 (459)
T KOG0272|consen  253 PLQ-DLEGHLARVSRVAFHP-----SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL  326 (459)
T ss_pred             chh-hhhcchhhheeeeecC-----CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccch
Confidence            766 6889999999999999     99999999999999999999999999999999999999999999 8899999999


Q ss_pred             EEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEE
Q 012799          263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (456)
Q Consensus       263 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  342 (456)
                      -+|||+++|+++..+.+|..+|.+++|+|+                                    |..+++|+.|++++
T Consensus       327 ~RvWDlRtgr~im~L~gH~k~I~~V~fsPN------------------------------------Gy~lATgs~Dnt~k  370 (459)
T KOG0272|consen  327 GRVWDLRTGRCIMFLAGHIKEILSVAFSPN------------------------------------GYHLATGSSDNTCK  370 (459)
T ss_pred             hheeecccCcEEEEecccccceeeEeECCC------------------------------------ceEEeecCCCCcEE
Confidence            999999999999999999999999999998                                    66799999999999


Q ss_pred             EEecCCCCCCccccccccccEeEEEECC-CCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCC
Q 012799          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN  421 (456)
Q Consensus       343 iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~  421 (456)
                      |||++.... ...+.+|.+.|+.+.|+| .|.+|+|++.|++++||...+..+++++.||.+.|.++             
T Consensus       371 VWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~-------------  436 (459)
T KOG0272|consen  371 VWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISL-------------  436 (459)
T ss_pred             Eeeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEE-------------
Confidence            999887665 677899999999999999 78899999999999999999999999999999999999             


Q ss_pred             ceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       422 ~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                    ..++|+++++|++.|.++++|
T Consensus       437 --------------Dis~d~~~i~t~s~DRT~KLW  457 (459)
T KOG0272|consen  437 --------------DISPDSQAIATSSFDRTIKLW  457 (459)
T ss_pred             --------------EeccCCceEEEeccCceeeec
Confidence                          889999999999999999999

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.1e-48  Score=311.48  Aligned_cols=286  Identities=23%  Similarity=0.398  Sum_probs=263.9

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  181 (456)
                      ++|+||.+.|.++.|++|.+++++++.||.+.|||.-+....+.++-....|...+|+|.|+++|.|+.|+...||++.+
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~  128 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST  128 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence            68999999999999999999999999999999999999888888888899999999999999999999999999999985


Q ss_pred             C--C---CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC-CC-eE
Q 012799          182 G--K---PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DG-VI  254 (456)
Q Consensus       182 ~--~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l  254 (456)
                      .  +   .+.+.+.+|.+.+.++.|.+      ...|++++.|.++.+||+++++.+..+.+|.+.|.++++.| ++ .+
T Consensus       129 ~d~~g~~~v~r~l~gHtgylScC~f~d------D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF  202 (343)
T KOG0286|consen  129 RDAEGNVRVSRELAGHTGYLSCCRFLD------DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF  202 (343)
T ss_pred             ccccccceeeeeecCccceeEEEEEcC------CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence            4  2   34456899999999999975      45899999999999999999999999999999999999999 66 99


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      ++|+-|+..++||++.+..+++|.+|...|+++.|.|+                                    +.-+++
T Consensus       203 vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~------------------------------------G~afat  246 (343)
T KOG0286|consen  203 VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPS------------------------------------GDAFAT  246 (343)
T ss_pred             EecccccceeeeeccCcceeEeecccccccceEEEccC------------------------------------CCeeee
Confidence            99999999999999999999999999999999999998                                    666999


Q ss_pred             EeCCCcEEEEecCCCCCCcc-ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeee
Q 012799          335 GSDDFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI  413 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  413 (456)
                      |++|++.++||++...+... ....-..+|++++||..|++|++|..|.++.+||.-.++.+..+.+|.+.|.++     
T Consensus       247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl-----  321 (343)
T KOG0286|consen  247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL-----  321 (343)
T ss_pred             cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE-----
Confidence            99999999999988664432 122334579999999999999999999999999999999999999999999999     


Q ss_pred             eeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                            ..+|||..|+|||.|.++|||
T Consensus       322 ----------------------~~s~DG~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  322 ----------------------GVSPDGMAVATGSWDSTLRIW  342 (343)
T ss_pred             ----------------------EECCCCcEEEecchhHheeec
Confidence                                  889999999999999999999

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.6e-46  Score=309.96  Aligned_cols=270  Identities=29%  Similarity=0.487  Sum_probs=246.1

Q ss_pred             CcccEEEEEEeccc----------eEEEeecc--cccccccCCcccEEEEEECCC--CCeEEEEECCCcEEEEeCCCCcc
Q 012799           77 SVEKVLSIVYQPQA----------VFRIRPVN--RCSATIAGHTEAVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQTP  142 (456)
Q Consensus        77 ~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~l~~h~~~V~~~~~s~~--~~~l~~~~~d~~v~vwd~~~~~~  142 (456)
                      ...++....|+++.          ..++|...  +..++|.||.+.|.++.|+|.  +..+|+|+.||++++|++++..+
T Consensus       174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~  253 (459)
T KOG0272|consen  174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP  253 (459)
T ss_pred             CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence            34455555665543          34455443  457889999999999999996  56899999999999999999999


Q ss_pred             eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (456)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i  222 (456)
                      +..+.+|...|..++|+|+|++|+|++.|.+-++||++++.... ...+|...|.+++|.|     +|..+++||.|..-
T Consensus       254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL-~QEGHs~~v~~iaf~~-----DGSL~~tGGlD~~~  327 (459)
T KOG0272|consen  254 LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL-LQEGHSKGVFSIAFQP-----DGSLAATGGLDSLG  327 (459)
T ss_pred             hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH-hhcccccccceeEecC-----CCceeeccCccchh
Confidence            99999999999999999999999999999999999999998775 6889999999999999     99999999999999


Q ss_pred             EEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecccc
Q 012799          223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (456)
Q Consensus       223 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  301 (456)
                      +|||+++++++..+.+|..+|.+++|+|+| .+++|+.|++++|||++..+.+.++.+|..-|+.+.++|.         
T Consensus       328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~---------  398 (459)
T KOG0272|consen  328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQ---------  398 (459)
T ss_pred             heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEeccc---------
Confidence            999999999999999999999999999999 9999999999999999999999999999999999999985         


Q ss_pred             CCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC
Q 012799          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD  381 (456)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d  381 (456)
                                                .+.+|++++.|+++++|.. ....+...+.||++.|.++.++||+.++++++.|
T Consensus       399 --------------------------~g~fL~TasyD~t~kiWs~-~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D  451 (459)
T KOG0272|consen  399 --------------------------EGYFLVTASYDNTVKIWST-RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD  451 (459)
T ss_pred             --------------------------CCeEEEEcccCcceeeecC-CCcccchhhcCCccceEEEEeccCCceEEEeccC
Confidence                                      2778999999999999994 4556788899999999999999999999999999


Q ss_pred             CcEEEEe
Q 012799          382 KSIKLWN  388 (456)
Q Consensus       382 g~i~iwd  388 (456)
                      .++++|.
T Consensus       452 RT~KLW~  458 (459)
T KOG0272|consen  452 RTIKLWR  458 (459)
T ss_pred             ceeeecc
Confidence            9999995

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.2e-45  Score=299.04  Aligned_cols=307  Identities=27%  Similarity=0.412  Sum_probs=278.1

Q ss_pred             ecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799           96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (456)
Q Consensus        96 ~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  175 (456)
                      |.....+.+.||..+|+.+-|+|+-..+++++.|++|++||..+++....+++|.+.+..++|+..|+++++++.|-.++
T Consensus        96 pRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~  175 (406)
T KOG0295|consen   96 PRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK  175 (406)
T ss_pred             CCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence            44567788899999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (456)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l  254 (456)
                      +||..+.....+.+.+|...|.++.|.|     .|.++++++.|.+|+.|++.++-++.++.+|...|..++.+.|| .+
T Consensus       176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P-----~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~  250 (406)
T KOG0295|consen  176 LWDFDTFFRCIKSLIGHEHGVSSVFFLP-----LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTII  250 (406)
T ss_pred             heeHHHHHHHHHHhcCcccceeeEEEEe-----cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEE
Confidence            9999875444457889999999999999     78999999999999999999999999999999999999999999 88


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      ++++.|.++++|-+.++++...++.|..+|.+++|.|...+........                     ....+.++.+
T Consensus       251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~---------------------~~~~~~~l~s  309 (406)
T KOG0295|consen  251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG---------------------STNGGQVLGS  309 (406)
T ss_pred             EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC---------------------CCCCccEEEe
Confidence            9999999999999999999999999999999999999754322111110                     1113578999


Q ss_pred             EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeee
Q 012799          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY  414 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~  414 (456)
                      ++.|++|++||+.++ ..+..+.+|.+.|..++|+|.|+||+++.+|+++++||++++++...+..|...++++      
T Consensus       310 ~SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l------  382 (406)
T KOG0295|consen  310 GSRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL------  382 (406)
T ss_pred             ecccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE------
Confidence            999999999998776 4566788999999999999999999999999999999999999999999999999999      


Q ss_pred             eecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                           .|..+..+++||+-|.++++|
T Consensus       383 ---------------------Dfh~~~p~VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  383 ---------------------DFHKTAPYVVTGSVDQTVKVW  403 (406)
T ss_pred             ---------------------ecCCCCceEEeccccceeeee
Confidence                                 889888999999999999998

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1e-43  Score=281.56  Aligned_cols=286  Identities=28%  Similarity=0.485  Sum_probs=246.8

Q ss_pred             cccccCCcccEEEEEECCC-CCeEEEEECCCcEEEEeCCC-----CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 012799          101 SATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNT-----QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  174 (456)
                      ..+|++|++.|+.++..+. .+.+++++.|.++.+|++..     |.+.+.+.||+..|..+..++||++.++++.|+++
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l   87 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL   87 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence            4578999999999999986 56889999999999998754     56788999999999999999999999999999999


Q ss_pred             EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc-CccEEEEEeCCC--
Q 012799          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGD--  251 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~--  251 (456)
                      ++||+.+++... .+.+|...|.+++|++     +.+.+++|+.|.+|++|++-........... ...|+|+.|+|+  
T Consensus        88 rlWDl~~g~~t~-~f~GH~~dVlsva~s~-----dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~  161 (315)
T KOG0279|consen   88 RLWDLATGESTR-RFVGHTKDVLSVAFST-----DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES  161 (315)
T ss_pred             EEEEecCCcEEE-EEEecCCceEEEEecC-----CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence            999999996654 7899999999999999     8899999999999999998655444333332 789999999997  


Q ss_pred             C-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCC
Q 012799          252 G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (456)
Q Consensus       252 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (456)
                      . .+++++.|++|++||+++.+....+.+|.+.++.++++|+                                    +.
T Consensus       162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD------------------------------------Gs  205 (315)
T KOG0279|consen  162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD------------------------------------GS  205 (315)
T ss_pred             CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCC------------------------------------CC
Confidence            4 9999999999999999999999999999999999999999                                    55


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccc-------c
Q 012799          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV-------G  403 (456)
Q Consensus       331 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~  403 (456)
                      ..++|+.||.+.+||++.++...  ..+|...|.+++|+|+.-.|+.+. +..|+|||+.++..+..++...       +
T Consensus       206 lcasGgkdg~~~LwdL~~~k~ly--sl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~  282 (315)
T KOG0279|consen  206 LCASGGKDGEAMLWDLNEGKNLY--SLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAG  282 (315)
T ss_pred             EEecCCCCceEEEEEccCCceeE--eccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccC
Confidence            69999999999999998877632  346788999999999987777765 4459999999998887765221       1


Q ss_pred             cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       404 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .+.++                         .++|++||..|++|-.|+.|++|
T Consensus       283 ~~~cl-------------------------slaws~dG~tLf~g~td~~irv~  310 (315)
T KOG0279|consen  283 DPICL-------------------------SLAWSADGQTLFAGYTDNVIRVW  310 (315)
T ss_pred             CcEEE-------------------------EEEEcCCCcEEEeeecCCcEEEE
Confidence            23333                         23999999999999999999998

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.3e-43  Score=276.34  Aligned_cols=266  Identities=24%  Similarity=0.402  Sum_probs=239.4

Q ss_pred             CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC-ccccccCcccceEEE
Q 012799          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SGNPLSGHKKWITGI  199 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~  199 (456)
                      -+||+++.|-+|++|...+|.+..+++...+.|+.+...|+++.||+++.- .|++||++++++ ....+.+|.+.|+++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence            479999999999999999999999999888999999999999999998764 799999999876 444688999999999


Q ss_pred             EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEe-
Q 012799          200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL-  277 (456)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-  277 (456)
                      .|..     +|+.+++|++||+++|||++...+.+.+. |..+|+++..+|+. .|++|..+|.|++||+.+..+...+ 
T Consensus        90 gF~~-----dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li  163 (311)
T KOG0315|consen   90 GFQC-----DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI  163 (311)
T ss_pred             EEee-----cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence            9998     99999999999999999999977766665 67999999999987 9999999999999999988666554 


Q ss_pred             ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-----CC
Q 012799          278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-----QP  352 (456)
Q Consensus       278 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~  352 (456)
                      ......|.++.+.|+                                    +.+++.+...|..++|++....     .+
T Consensus       164 Pe~~~~i~sl~v~~d------------------------------------gsml~a~nnkG~cyvW~l~~~~~~s~l~P  207 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPD------------------------------------GSMLAAANNKGNCYVWRLLNHQTASELEP  207 (311)
T ss_pred             CCCCcceeeEEEcCC------------------------------------CcEEEEecCCccEEEEEccCCCccccceE
Confidence            345578999999998                                    6669999999999999976533     45


Q ss_pred             ccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC-eEEEEEecccccEEEEEeeeeeeecCCCCceeeeccccc
Q 012799          353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCC  431 (456)
Q Consensus       353 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~  431 (456)
                      +.++..|.+.+..+.+|||+++||+++.|.+++||+..+. +.-..+++|...+++.                       
T Consensus       208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc-----------------------  264 (311)
T KOG0315|consen  208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDC-----------------------  264 (311)
T ss_pred             hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEee-----------------------
Confidence            6678899999999999999999999999999999999987 6677889999999999                       


Q ss_pred             ccceeEecCCCeEEEeeCCCceEEC
Q 012799          432 MSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       432 ~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                          +||.||+||+||+.|+.+++|
T Consensus       265 ----~FS~dg~YlvTassd~~~rlW  285 (311)
T KOG0315|consen  265 ----AFSADGEYLVTASSDHTARLW  285 (311)
T ss_pred             ----eeccCccEEEecCCCCceeec
Confidence                899999999999999999999

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.5e-43  Score=285.79  Aligned_cols=296  Identities=27%  Similarity=0.423  Sum_probs=258.2

Q ss_pred             cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 012799           97 VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (456)
Q Consensus        97 ~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  176 (456)
                      +.+..+.+.||.+.|.|+++.|-..+|++|+.|++++|||+.+++...++.+|...|..+++++...|+++++.|+.|+.
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC  219 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC  219 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEE
Q 012799          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY  255 (456)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~  255 (456)
                      ||++..+.+. .+.+|-..|.+++.+|     .-+.+++|+.|.++++||+++...+..+.+|..+|..+.+.|-. .++
T Consensus       220 wDLe~nkvIR-~YhGHlS~V~~L~lhP-----Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi  293 (460)
T KOG0285|consen  220 WDLEYNKVIR-HYHGHLSGVYCLDLHP-----TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI  293 (460)
T ss_pred             EechhhhhHH-HhccccceeEEEeccc-----cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence            9999988776 7889999999999999     66899999999999999999999999999999999999999855 999


Q ss_pred             EEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (456)
Q Consensus       256 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (456)
                      +|+.|++|++||++.|+....+..|...+.+++.+|..                                    ..++++
T Consensus       294 t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e------------------------------------~~fASa  337 (460)
T KOG0285|consen  294 TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE------------------------------------NLFASA  337 (460)
T ss_pred             EecCCceEEEeeeccCceeEeeecccceeeEEecCCch------------------------------------hhhhcc
Confidence            99999999999999999999999999999999999973                                    336666


Q ss_pred             eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeee
Q 012799          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC  415 (456)
Q Consensus       336 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~  415 (456)
                      +.| .|+.|++..+.. ...+.+|...|++++.+.|| ++++|+..|.+.+||.++|-..+....-..+ -+        
T Consensus       338 s~d-nik~w~~p~g~f-~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-GS--------  405 (460)
T KOG0285|consen  338 SPD-NIKQWKLPEGEF-LQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-GS--------  405 (460)
T ss_pred             CCc-cceeccCCccch-hhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccC-Cc--------
Confidence            655 689999776654 44488999999999998776 7889999999999999998665544211110 00        


Q ss_pred             ecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                .+++.+|.+.+|...|..|++|..|.+|++|
T Consensus       406 ----------l~sEagI~as~fDktg~rlit~eadKtIk~~  436 (460)
T KOG0285|consen  406 ----------LESEAGIFASCFDKTGSRLITGEADKTIKMY  436 (460)
T ss_pred             ----------cccccceeEEeecccCceEEeccCCcceEEE
Confidence                      1223333344889999999999999999998

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.2e-44  Score=298.61  Aligned_cols=282  Identities=24%  Similarity=0.447  Sum_probs=253.6

Q ss_pred             cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  184 (456)
                      ..-..+|..+.|.|+|+.|++|+..|.+.+|+..+......++.|..+|.++.|++++.++++|+.+|.|++|+..-...
T Consensus        93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV  172 (464)
T KOG0284|consen   93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV  172 (464)
T ss_pred             cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence            34466899999999999999999999999999876655566779999999999999999999999999999999876554


Q ss_pred             ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcE
Q 012799          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTI  263 (456)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i  263 (456)
                      .. ....|...|.+++|+|     +...|++++.||+|+|||....+....+.+|.-.|.+++|+|.. .+++++.|..|
T Consensus       173 k~-~~ahh~eaIRdlafSp-----nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlV  246 (464)
T KOG0284|consen  173 KI-IQAHHAEAIRDLAFSP-----NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLV  246 (464)
T ss_pred             HH-hhHhhhhhhheeccCC-----CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCcee
Confidence            32 4455558999999999     77899999999999999999999988999999999999999976 99999999999


Q ss_pred             EEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEE
Q 012799          264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (456)
Q Consensus       264 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  343 (456)
                      ++||.+++.++.++..|...|..+.|+++                                    +++|++++.|..+++
T Consensus       247 KlWDprSg~cl~tlh~HKntVl~~~f~~n------------------------------------~N~Llt~skD~~~kv  290 (464)
T KOG0284|consen  247 KLWDPRSGSCLATLHGHKNTVLAVKFNPN------------------------------------GNWLLTGSKDQSCKV  290 (464)
T ss_pred             EeecCCCcchhhhhhhccceEEEEEEcCC------------------------------------CCeeEEccCCceEEE
Confidence            99999999999999999999999999998                                    567999999999999


Q ss_pred             EecCCCCCCccccccccccEeEEEECC-CCCEEEEEECCCcEEEEeCCCCeEEEEE-ecccccEEEEEeeeeeeecCCCC
Q 012799          344 WEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQIRFELIYCFRYPSN  421 (456)
Q Consensus       344 wd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~  421 (456)
                      +|++. .+.+..+++|+..+++++|+| ...+|.+|+.||.|..|.+...+++..+ .+|...|+++             
T Consensus       291 ~DiR~-mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl-------------  356 (464)
T KOG0284|consen  291 FDIRT-MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSL-------------  356 (464)
T ss_pred             EehhH-hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeee-------------
Confidence            99883 445667889999999999999 6778999999999999999855555544 4899999999             


Q ss_pred             ceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       422 ~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                    +|+|-|.+|++|+.|.++++|
T Consensus       357 --------------~~hPlGhil~tgsnd~t~rfw  377 (464)
T KOG0284|consen  357 --------------AYHPLGHILATGSNDRTVRFW  377 (464)
T ss_pred             --------------eccccceeEeecCCCcceeee
Confidence                          999999999999999999999

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.4e-41  Score=291.79  Aligned_cols=348  Identities=22%  Similarity=0.384  Sum_probs=284.0

Q ss_pred             CcCcccEEEEEEeccceEEE-------------eecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc
Q 012799           75 KVSVEKVLSIVYQPQAVFRI-------------RPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT  141 (456)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~  141 (456)
                      ..+...++.+.+.|...||+             -|+.+-..+++.|..-|.|+.|+|||.++|+++.||+|.+||-.+++
T Consensus       144 ~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge  223 (603)
T KOG0318|consen  144 TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE  223 (603)
T ss_pred             eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc
Confidence            34667778888888776664             24455678889999999999999999999999999999999999999


Q ss_pred             ceeEEe---cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcc--cceEEEEecccccCCCCCEEEEE
Q 012799          142 PMFKCT---GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK--KWITGISWEPVHLNAPCRRFVSA  216 (456)
Q Consensus       142 ~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~l~~~  216 (456)
                      .+..+.   +|.+.|.+++|+||++.+++++.|.+++|||+.+.+...+...+..  .....+-|.       ...|++.
T Consensus       224 ~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-------kd~lItV  296 (603)
T KOG0318|consen  224 KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-------KDHLITV  296 (603)
T ss_pred             EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-------CCeEEEE
Confidence            999988   8999999999999999999999999999999999987665444433  344455563       3689999


Q ss_pred             eCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCcceEEEEecCcce
Q 012799          217 SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYA  294 (456)
Q Consensus       217 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~  294 (456)
                      +.+|.|.+++......+..+.+|...|+++..++++ .|++|+.||.|.-||..++..-+.. +.|...|.+++.+....
T Consensus       297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~  376 (603)
T KOG0318|consen  297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE  376 (603)
T ss_pred             EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence            999999999999999999999999999999999999 9999999999999999988765544 56888888888877666


Q ss_pred             eeeccccCCCCccCChHH-------------HHH-------------------------------HHHhhhhhccCCCCC
Q 012799          295 LRTGAFDHTGKQYSSPEE-------------MKK-------------------------------AALERYNKIKGNAPE  330 (456)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~-------------~~~-------------------------------~~~~~~~~~~~~~~~  330 (456)
                      +...++|...+.......             ...                               ...........+++.
T Consensus       377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~  456 (603)
T KOG0318|consen  377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS  456 (603)
T ss_pred             EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC
Confidence            666666554443321100             000                               000011112467788


Q ss_pred             EEEEEeCCCcEEEEecCCCC-CCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEE-EEecccccEEEE
Q 012799          331 RLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA-VFRGHVGPVYQI  408 (456)
Q Consensus       331 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i  408 (456)
                      .++.|+.|+.+++|.+.... ........|..+|++++||||+.|||+|...+.+.+||+.+.+... ...-|+..|+++
T Consensus       457 ~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~  536 (603)
T KOG0318|consen  457 EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV  536 (603)
T ss_pred             EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence            99999999999999987655 3344677899999999999999999999999999999999887633 334599999999


Q ss_pred             EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                                 +|+|+..++||||-|.+|.||
T Consensus       537 ---------------------------aWsP~n~~vATGSlDt~Viiy  557 (603)
T KOG0318|consen  537 ---------------------------AWSPNNKLVATGSLDTNVIIY  557 (603)
T ss_pred             ---------------------------EeCCCceEEEeccccceEEEE
Confidence                                       999999999999999999998

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.4e-42  Score=274.48  Aligned_cols=286  Identities=25%  Similarity=0.475  Sum_probs=252.2

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCC-CCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN-TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      .-.+.||.+.|+.+.|+|+|.+||+|+.|..|.+|++. ..+....+++|.+.|..+.|.+|++.|++++.|.+++.||.
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~  119 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA  119 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence            44678999999999999999999999999999999954 44556778899999999999999999999999999999999


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~  258 (456)
                      ++|+... ...+|...|..+.  |...  .-.++.+++.||++++||+++...++++. .+..++++.|..++ .+++|+
T Consensus       120 ~tG~~~r-k~k~h~~~vNs~~--p~rr--g~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sgg  193 (338)
T KOG0265|consen  120 ETGKRIR-KHKGHTSFVNSLD--PSRR--GPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGG  193 (338)
T ss_pred             ccceeee-hhccccceeeecC--cccc--CCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecc
Confidence            9999876 6788999998887  4322  33577789999999999999998888774 46789999999988 999999


Q ss_pred             CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (456)
                      -|+.|++||++.+.....+.+|..+|+.+..++.                                    +.++.+-+.|
T Consensus       194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~------------------------------------gs~llsnsMd  237 (338)
T KOG0265|consen  194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRY------------------------------------GSFLLSNSMD  237 (338)
T ss_pred             ccCceeeeccccCcceEEeecccCceeeEEeccC------------------------------------CCcccccccc
Confidence            9999999999999999999999999999999998                                    5669999999


Q ss_pred             CcEEEEecCCCC---CCcccccccc----ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEee
Q 012799          339 FTMFLWEPAVSK---QPKTRMTGHQ----QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE  411 (456)
Q Consensus       339 g~i~iwd~~~~~---~~~~~~~~~~----~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~  411 (456)
                      .++++||++.-.   ..+..+.+|.    .....++|+|+++.+.+|+.|..+++||......+..+.||.+.|+.+   
T Consensus       238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~---  314 (338)
T KOG0265|consen  238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEV---  314 (338)
T ss_pred             ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEe---
Confidence            999999977532   2244444543    235678999999999999999999999999999999999999999999   


Q ss_pred             eeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                                              +|+|...+|.+++.|.+|++
T Consensus       315 ------------------------~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  315 ------------------------DFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             ------------------------eecCCCcEEEEeccCceeEe
Confidence                                    89999999999999999986

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.5e-42  Score=290.37  Aligned_cols=284  Identities=27%  Similarity=0.506  Sum_probs=254.7

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  187 (456)
                      +..|++++|+.+|..||+|+.||.+++|+.. +..+.++..|.++|.++.|+.+|+||++++.|+++.+||..++.... 
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q-  312 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ-  312 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE-
Confidence            4689999999999999999999999999965 77788899999999999999999999999999999999999887654 


Q ss_pred             cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEE
Q 012799          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW  266 (456)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iw  266 (456)
                      .+.-|..+-..+.|..      ...|++.+.|+.|+++.+....++.++.+|.++|.++.|+|.+ .|++++.|++++||
T Consensus       313 ~f~~~s~~~lDVdW~~------~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiW  386 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQS------NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIW  386 (524)
T ss_pred             eeeeccCCccceEEec------CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEee
Confidence            4566777767788864      4689999999999999999999999999999999999999999 99999999999999


Q ss_pred             ECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEec
Q 012799          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (456)
Q Consensus       267 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  346 (456)
                      +.........+..|...|..+.|+|.+.......                           .+..+++++.|++|++||+
T Consensus       387 s~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~---------------------------~~~~l~sas~dstV~lwdv  439 (524)
T KOG0273|consen  387 SMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPN---------------------------MNLMLASASFDSTVKLWDV  439 (524)
T ss_pred             ecCCCcchhhhhhhccceeeEeecCCCCccCCCc---------------------------CCceEEEeecCCeEEEEEc
Confidence            9999999999999999999999999865533222                           2556999999999999997


Q ss_pred             CCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeee
Q 012799          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV  426 (456)
Q Consensus       347 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~  426 (456)
                      ..+ .++..+..|..+|.+++|+|+|+++|+|+.||.|.+|+++++++++.+.+ .+.|..+                  
T Consensus       440 ~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel------------------  499 (524)
T KOG0273|consen  440 ESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFEL------------------  499 (524)
T ss_pred             cCC-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEE------------------
Confidence            655 46667889999999999999999999999999999999999999999885 4558888                  


Q ss_pred             cccccccceeEecCCCeEEEeeCCCceEE
Q 012799          427 DMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       427 ~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                               +|+.+|.+|..+-.||.+++
T Consensus       500 ---------~Wn~~G~kl~~~~sd~~vcv  519 (524)
T KOG0273|consen  500 ---------CWNAAGDKLGACASDGSVCV  519 (524)
T ss_pred             ---------EEcCCCCEEEEEecCCCceE
Confidence                     99999999999999998875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.6e-41  Score=278.69  Aligned_cols=318  Identities=25%  Similarity=0.429  Sum_probs=255.9

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      ...+|..|++.|.+++.+|+.+++|||+.|..-.+|++.++.....+.+|+..|+++.|+.+|.+||||+.+|.|+||+.
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~  258 (456)
                      .++..... +...-..+.=+.|+|     .+..|++|+.||.+.+|.+.++...+.+.+|+.++++-.|.|+| +++++.
T Consensus       136 stg~~~~~-~~~e~~dieWl~WHp-----~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy  209 (399)
T KOG0296|consen  136 STGGEQWK-LDQEVEDIEWLKWHP-----RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY  209 (399)
T ss_pred             ccCceEEE-eecccCceEEEEecc-----cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe
Confidence            99887653 334456677888998     77899999999999999999988889999999999999999999 999999


Q ss_pred             CCCcEEEEECCCCeEEEEeecC-CcceEEEEecCcceee-eccc--------cCCCCc----------cCChHHHHHHHH
Q 012799          259 QDCTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALR-TGAF--------DHTGKQ----------YSSPEEMKKAAL  318 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~-~~~~--------~~~~~~----------~~~~~~~~~~~~  318 (456)
                      .||+|++||+.+++++..+... .....++.++...... .+..        ...++.          ............
T Consensus       210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv  289 (399)
T KOG0296|consen  210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV  289 (399)
T ss_pred             cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence            9999999999999998887632 2223333333222111 1100        011111          110111000001


Q ss_pred             hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 012799          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (456)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  398 (456)
                      .  .......-.+.++|+-||+|.|||+...  ..+....|...|..+.|-+ ..+|++++.+|.|+.||.++|+++.++
T Consensus       290 e--~~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y  364 (399)
T KOG0296|consen  290 E--SIPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY  364 (399)
T ss_pred             h--hcccccccchhhcccccceEEEEecccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE
Confidence            0  0112223345789999999999997543  3445567899999999998 789999999999999999999999999


Q ss_pred             ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          399 RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       399 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                      .+|...|.++                           +.+|++++++|+|.|++.+|
T Consensus       365 ~GH~~~Il~f---------------------------~ls~~~~~vvT~s~D~~a~V  394 (399)
T KOG0296|consen  365 TGHQMGILDF---------------------------ALSPQKRLVVTVSDDNTALV  394 (399)
T ss_pred             ecCchheeEE---------------------------EEcCCCcEEEEecCCCeEEE
Confidence            9999999999                           88999999999999999886

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.5e-41  Score=286.40  Aligned_cols=281  Identities=29%  Similarity=0.476  Sum_probs=250.8

Q ss_pred             cCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCc----ceeEEe----------cCCCCEEEEEEcCCCCEEEEEe
Q 012799          105 AGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQT----PMFKCT----------GHKNWVLCIAWSADGKHLVSGS  169 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~----~~~~~~----------~~~~~v~~~~~~~~~~~l~s~~  169 (456)
                      ..|..+|.+++|+|-.. .+++|+.|-+.++|++....    ....++          .....|++++|+.+|..||+|+
T Consensus       175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~  254 (524)
T KOG0273|consen  175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS  254 (524)
T ss_pred             ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence            34999999999999766 89999999999999987411    101111          2346799999999999999999


Q ss_pred             CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeC
Q 012799          170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG  249 (456)
Q Consensus       170 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  249 (456)
                      .||.+++|+...+...  .+..|+++|.++.|+.     .|++|++++.|+++.+||..++.....+..|..+-.++.|-
T Consensus       255 ~~G~~riw~~~G~l~~--tl~~HkgPI~slKWnk-----~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~  327 (524)
T KOG0273|consen  255 EDGEARIWNKDGNLIS--TLGQHKGPIFSLKWNK-----KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ  327 (524)
T ss_pred             cCcEEEEEecCchhhh--hhhccCCceEEEEEcC-----CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence            9999999998655433  6889999999999998     99999999999999999999999999999899888889999


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799          250 GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (456)
Q Consensus       250 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (456)
                      .+..+++++.||.|+++.+....++.++.+|.+.|.++.|+|.                                    +
T Consensus       328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t------------------------------------g  371 (524)
T KOG0273|consen  328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT------------------------------------G  371 (524)
T ss_pred             cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC------------------------------------C
Confidence            8889999999999999999999999999999999999999998                                    5


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC---------CEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG---------QWVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                      ..|++++.|++++||... .......+.+|...|..+.|+|.|         ..+++++.|++|++||+..|.++.+|..
T Consensus       372 ~LLaS~SdD~TlkiWs~~-~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k  450 (524)
T KOG0273|consen  372 SLLASCSDDGTLKIWSMG-QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK  450 (524)
T ss_pred             ceEEEecCCCeeEeeecC-CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc
Confidence            569999999999999944 445667788999999999999964         4799999999999999999999999999


Q ss_pred             ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       401 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      |..+|+++                           +|+|+|++||+|+.||.|.||
T Consensus       451 H~~pVysv---------------------------afS~~g~ylAsGs~dg~V~iw  479 (524)
T KOG0273|consen  451 HQEPVYSV---------------------------AFSPNGRYLASGSLDGCVHIW  479 (524)
T ss_pred             CCCceEEE---------------------------EecCCCcEEEecCCCCeeEec
Confidence            99999999                           899999999999999999999

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-41  Score=281.56  Aligned_cols=288  Identities=24%  Similarity=0.375  Sum_probs=245.9

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcc---eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  174 (456)
                      .+..+.|..|++.|.-+.||++|++||+++.|.+..+|++.....   .+++.+|..+|..+.|+||.++|++|+.|..+
T Consensus       214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~  293 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL  293 (519)
T ss_pred             chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence            445678999999999999999999999999999999998865544   67888999999999999999999999999999


Q ss_pred             EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc-CccEEEEEeCCCC-
Q 012799          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDG-  252 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-  252 (456)
                      .+||..+|........++...+.+++|.|     ||..+++|+.|+.+..||+.... ....++- ...|.+++..+|| 
T Consensus       294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-----Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk  367 (519)
T KOG0293|consen  294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCP-----DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGK  367 (519)
T ss_pred             eeccCCcchhhhhcccCcCCCcceeEEcc-----CCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCc
Confidence            99999999987655566678899999999     99999999999999999986443 3333332 3569999999999 


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (456)
                      .+++.+.|..|++|+..+......+. ...+|++++++.+                                    +.++
T Consensus       368 ~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d------------------------------------~k~~  410 (519)
T KOG0293|consen  368 YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKD------------------------------------GKLA  410 (519)
T ss_pred             EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCC------------------------------------CcEE
Confidence            88888999999999988765544343 5678999999988                                    5568


Q ss_pred             EEEeCCCcEEEEecCCCCCCcccccccccc--EeEEEECC-CCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEE
Q 012799          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQL--VNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR  409 (456)
Q Consensus       333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~  409 (456)
                      ++.-.+..+++||+. ....+.+..||...  +-.-||-- +..++++|++|+.|+||+..+|+++.++.||...|+++ 
T Consensus       411 LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcV-  488 (519)
T KOG0293|consen  411 LVNLQDQEIHLWDLE-ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCV-  488 (519)
T ss_pred             EEEcccCeeEEeecc-hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEE-
Confidence            889999999999987 45566677788753  33345544 56899999999999999999999999999999999999 


Q ss_pred             eeeeeeecCCCCceeeecccccccceeEecCC-CeEEEeeCCCceEEC
Q 012799          410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVT  456 (456)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~s~s~Dg~v~iW  456 (456)
                                                +|+|.. .++|+||+||+||||
T Consensus       489 --------------------------swNP~~p~m~ASasDDgtIRIW  510 (519)
T KOG0293|consen  489 --------------------------SWNPADPEMFASASDDGTIRIW  510 (519)
T ss_pred             --------------------------ecCCCCHHHhhccCCCCeEEEe
Confidence                                      999965 589999999999999

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.2e-39  Score=287.11  Aligned_cols=286  Identities=41%  Similarity=0.670  Sum_probs=257.5

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  180 (456)
                      .+++++|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|+|+++++++++.||.|++|++.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            35678999999999999999999999999999999999988888888999999999999999999999999999999999


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ  259 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~  259 (456)
                      +++... .+..|...+.++.|.+     ++.++++++.+|.+++||+++++....+..|...+.+++|+|++ .+++++.
T Consensus        82 ~~~~~~-~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  155 (289)
T cd00200          82 TGECVR-TLTGHTSYVSSVAFSP-----DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ  155 (289)
T ss_pred             cccceE-EEeccCCcEEEEEEcC-----CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC
Confidence            876554 4667888999999998     67788888889999999999999999898899999999999988 6666666


Q ss_pred             CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (456)
Q Consensus       260 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  339 (456)
                      +|.|++||+++++.+..+..+...+.++.++++                                    +..+++++.++
T Consensus       156 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~~~l~~~~~~~  199 (289)
T cd00200         156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD------------------------------------GEKLLSSSSDG  199 (289)
T ss_pred             CCcEEEEEccccccceeEecCccccceEEECCC------------------------------------cCEEEEecCCC
Confidence            999999999999988889888889999999987                                    45588888899


Q ss_pred             cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCC
Q 012799          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP  419 (456)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~  419 (456)
                      .+++||++.. .....+..|...+.+++|+|++.++++++.||.+++||+.+++.+..+..|...+.++           
T Consensus       200 ~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~-----------  267 (289)
T cd00200         200 TIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL-----------  267 (289)
T ss_pred             cEEEEECCCC-ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEE-----------
Confidence            9999997654 3445555788899999999999899998889999999999999999999999999999           


Q ss_pred             CCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                      +|+|++++|++++.||.|++|
T Consensus       268 ----------------~~~~~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         268 ----------------AWSPDGKRLASGSADGTIRIW  288 (289)
T ss_pred             ----------------EECCCCCEEEEecCCCeEEec
Confidence                            899999999999999999999

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1e-39  Score=254.67  Aligned_cols=275  Identities=24%  Similarity=0.446  Sum_probs=242.3

Q ss_pred             ceEEEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEE
Q 012799           90 AVFRIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHL  165 (456)
Q Consensus        90 ~~~~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l  165 (456)
                      ...++|.  .+.|.++++.....|+.+...|+++.||+++.. .|++||++++.  ++.++.+|...|+++.|..+|+.+
T Consensus        20 hTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWM   98 (311)
T KOG0315|consen   20 HTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWM   98 (311)
T ss_pred             ceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEE
Confidence            4455664  478999999999999999999999999999754 79999998765  588999999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCcCccEE
Q 012799          166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAVT  244 (456)
Q Consensus       166 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~  244 (456)
                      ++|++||+++|||++.....  ....|..+|+++..+|     +...|++|..+|.|++||+....+...+ ......|.
T Consensus        99 yTgseDgt~kIWdlR~~~~q--R~~~~~spVn~vvlhp-----nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~  171 (311)
T KOG0315|consen   99 YTGSEDGTVKIWDLRSLSCQ--RNYQHNSPVNTVVLHP-----NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQ  171 (311)
T ss_pred             EecCCCceEEEEeccCcccc--hhccCCCCcceEEecC-----CcceEEeecCCCcEEEEEccCCccccccCCCCCccee
Confidence            99999999999999984433  4666789999999999     8889999999999999999988776655 34567899


Q ss_pred             EEEeCCCC-eEEEEeCCCcEEEEECCCC------eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799          245 CVKWGGDG-VIYTGSQDCTIKVWETTQG------KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (456)
Q Consensus       245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (456)
                      ++...|+| +++++...|..++|++-+.      +++..++.|...+....++|+                         
T Consensus       172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd-------------------------  226 (311)
T KOG0315|consen  172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD-------------------------  226 (311)
T ss_pred             eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC-------------------------
Confidence            99999999 8888889999999998764      356678889999999999998                         


Q ss_pred             HhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE
Q 012799          318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV  397 (456)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  397 (456)
                                 ..+|++++.|.+++||+....-+....+.+|+..+..++||.||+||++|+.|+.+++|++..++.+..
T Consensus       227 -----------~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q  295 (311)
T KOG0315|consen  227 -----------VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ  295 (311)
T ss_pred             -----------CcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence                       667999999999999997766455567889999999999999999999999999999999999999999


Q ss_pred             EecccccEEEE
Q 012799          398 FRGHVGPVYQI  408 (456)
Q Consensus       398 ~~~~~~~v~~i  408 (456)
                      +.+|-.+..++
T Consensus       296 y~gh~K~~vc~  306 (311)
T KOG0315|consen  296 YQGHHKAAVCV  306 (311)
T ss_pred             cCCcccccEEE
Confidence            99998877776

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-40  Score=261.49  Aligned_cols=254  Identities=25%  Similarity=0.405  Sum_probs=218.5

Q ss_pred             ecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799           96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (456)
Q Consensus        96 ~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  175 (456)
                      ..+..++.|+||+..|..++.++||++.++++.|+++++||+.+++....+.+|...|.+++|++|.+.+++|+.|.+|+
T Consensus        51 ~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTik  130 (315)
T KOG0279|consen   51 KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIK  130 (315)
T ss_pred             ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceee
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (456)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l  254 (456)
                      +|+...+......-..+...|.++.|+|..   +..+|++++.|++|++||+++.+....+.+|.+.++.++++||| ..
T Consensus       131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~---~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslc  207 (315)
T KOG0279|consen  131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNE---SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLC  207 (315)
T ss_pred             eeeecccEEEEEecCCCcCcEEEEEEcCCC---CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEE
Confidence            999976554432223348899999999954   46799999999999999999999999999999999999999999 88


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      ++|+.||.+.+||++.++.+..+. +...|.+++|+|+.                                     +.++
T Consensus       208 asGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnr-------------------------------------ywL~  249 (315)
T KOG0279|consen  208 ASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNR-------------------------------------YWLC  249 (315)
T ss_pred             ecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCc-------------------------------------eeEe
Confidence            899999999999999999988876 78899999999973                                     3455


Q ss_pred             EeCCCcEEEEecCCCCCCcc---cccc-----ccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          335 GSDDFTMFLWEPAVSKQPKT---RMTG-----HQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~---~~~~-----~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                      +..+..|+|||+........   ...+     ......+++|++||..|++|-.|+.|++|.+.
T Consensus       250 ~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  250 AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             eccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            55566799999776542211   1111     23346788999999999999999999999864

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=7.2e-42  Score=290.73  Aligned_cols=293  Identities=24%  Similarity=0.380  Sum_probs=256.7

Q ss_pred             EeecccccccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCC-CcceeEEecCCCCEEEEEEcCCCCEEEEEeCC
Q 012799           94 IRPVNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA  171 (456)
Q Consensus        94 ~~~~~~~~~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  171 (456)
                      ...+.+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +.++.++.+|..+|..++|+++|..+++++.|
T Consensus       200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD  279 (503)
T KOG0282|consen  200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD  279 (503)
T ss_pred             eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence            4445667889999999999999999 899999999999999999876 88999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCC-CEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799          172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (456)
Q Consensus       172 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  250 (456)
                      +.+++||.++|+.....  .....++++.|+|     ++ +.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|-+
T Consensus       280 ~~lKlwDtETG~~~~~f--~~~~~~~cvkf~p-----d~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~  352 (503)
T KOG0282|consen  280 RFLKLWDTETGQVLSRF--HLDKVPTCVKFHP-----DNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD  352 (503)
T ss_pred             eeeeeeccccceEEEEE--ecCCCceeeecCC-----CCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc
Confidence            99999999999987532  2345678999999     44 8999999999999999999999999999999999999999


Q ss_pred             CC-eEEEEeCCCcEEEEECCCCeEEEEeec-CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799          251 DG-VIYTGSQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (456)
Q Consensus       251 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (456)
                      +| ++++.+.|+++++|+.+.+.+++.+.. ......++..+|.                                    
T Consensus       353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~------------------------------------  396 (503)
T KOG0282|consen  353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN------------------------------------  396 (503)
T ss_pred             CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCC------------------------------------
Confidence            99 999999999999999998877665532 3445677888887                                    


Q ss_pred             CCEEEEEeCCCcEEEEecCCCC--CCcccccccc--ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccccc
Q 012799          329 PERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQ--QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP  404 (456)
Q Consensus       329 ~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  404 (456)
                      +.++++-+.|+.|.+|.+...-  .....+.+|.  +.-..+.|||||++|++|+.||.+.+||.++-+++..++.|.++
T Consensus       397 ~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~  476 (503)
T KOG0282|consen  397 GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQP  476 (503)
T ss_pred             CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcc
Confidence            5568899999999999854332  2344566775  45677899999999999999999999999999999999999999


Q ss_pred             EEEEEeeeeeeecCCCCceeeecccccccceeEecCC-CeEEEeeCCCceEEC
Q 012799          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVT  456 (456)
Q Consensus       405 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~s~s~Dg~v~iW  456 (456)
                      +..+                           .|+|-. ..+||||.||.|++|
T Consensus       477 ci~v---------------------------~wHP~e~Skvat~~w~G~Ikiw  502 (503)
T KOG0282|consen  477 CIGV---------------------------DWHPVEPSKVATCGWDGLIKIW  502 (503)
T ss_pred             eEEE---------------------------EecCCCcceeEecccCceeEec
Confidence            9999                           899865 589999999999999

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.9e-39  Score=254.47  Aligned_cols=281  Identities=29%  Similarity=0.460  Sum_probs=237.8

Q ss_pred             cccccCCcccEEEEEECCC-CCeEEEEECCCcEEEEeCCCCc---ceeEE-ecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799          101 SATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT---PMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  175 (456)
                      .+.+.+|.+.|..++|+|- |..||+|+.|+.|++|+...+.   +...+ .+|...|.+++|+|.|++|++++.|.++.
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence            4578899999999999998 8899999999999999988532   22222 37999999999999999999999999999


Q ss_pred             EEeCCCCCC-ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC---CeEEEEecCcCccEEEEEeCCC
Q 012799          176 CWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---RKCVICLSGHTLAVTCVKWGGD  251 (456)
Q Consensus       176 vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~  251 (456)
                      ||.-..+.. ....+.+|..+|.+++|++     +|++||+++.|+.|.||.+..   -++...++.|...|..+.|+|.
T Consensus        87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~-----sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   87 IWKKEDGEFECVATLEGHENEVKCVAWSA-----SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             EeecCCCceeEEeeeeccccceeEEEEcC-----CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence            998775542 2236889999999999999     999999999999999999874   3577888999999999999996


Q ss_pred             C-eEEEEeCCCcEEEEECC---CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799          252 G-VIYTGSQDCTIKVWETT---QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (456)
Q Consensus       252 ~-~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (456)
                      . .|++++.|++|++|+-.   .-.+++++.+|...|.+++|++.                                   
T Consensus       162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~-----------------------------------  206 (312)
T KOG0645|consen  162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI-----------------------------------  206 (312)
T ss_pred             cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC-----------------------------------
Confidence            6 99999999999999876   34678999999999999999997                                   


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC------eEEE-EEec
Q 012799          328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG------KFVA-VFRG  400 (456)
Q Consensus       328 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~------~~~~-~~~~  400 (456)
                       +.+++++++|++++||.....     ...-|...+..+.|.  ...|++++.|+.|++|.....      +++. .-..
T Consensus       207 -G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~a  278 (312)
T KOG0645|consen  207 -GSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGA  278 (312)
T ss_pred             -CceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcc
Confidence             677999999999999985422     123467889999998  447999999999999976542      1111 2346


Q ss_pred             ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecC-CCeEEEeeCCCceEEC
Q 012799          401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD-SRLLLSGSKDSTLKVT  456 (456)
Q Consensus       401 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~s~s~Dg~v~iW  456 (456)
                      |...|+++                           +|.|. ...|++||.||.|++|
T Consensus       279 He~dVNsV---------------------------~w~p~~~~~L~s~~DDG~v~~W  308 (312)
T KOG0645|consen  279 HEVDVNSV---------------------------QWNPKVSNRLASGGDDGIVNFW  308 (312)
T ss_pred             cccccceE---------------------------EEcCCCCCceeecCCCceEEEE
Confidence            88889988                           99995 6799999999999998

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.4e-41  Score=304.47  Aligned_cols=276  Identities=29%  Similarity=0.502  Sum_probs=242.0

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      |..++..-...++|..|++|+.+||.|..|..|++|.+... .+..+++ ...         -..+=+.+.|-.+.+.|.
T Consensus       370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~-~~~---------l~~~d~~sad~~~~~~D~  438 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKD-ASD---------LSNIDTESADVDVDMLDD  438 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccc-hhh---------hccccccccchhhhhccc
Confidence            44555566778999999999999999999999999998754 3333331 111         111223344444666666


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~  258 (456)
                      ++..... .+.+|.++|..+.|+|     +.++|+++++|+++++|.+.+..++..+++|..+|.++.|+|.| +|++++
T Consensus       439 ~~~~~~~-~L~GH~GPVyg~sFsP-----d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas  512 (707)
T KOG0263|consen  439 DSSGTSR-TLYGHSGPVYGCSFSP-----DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS  512 (707)
T ss_pred             cCCceeE-EeecCCCceeeeeecc-----cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC
Confidence            6555444 5899999999999999     88999999999999999999999999999999999999999999 999999


Q ss_pred             CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (456)
                      .|++-++|......+++.+.+|.+.+.|+.|+|+                                    ..++++|+.|
T Consensus       513 ~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPN------------------------------------s~Y~aTGSsD  556 (707)
T KOG0263|consen  513 HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN------------------------------------SNYVATGSSD  556 (707)
T ss_pred             CCceeeeeecccCCchhhhcccccccceEEECCc------------------------------------ccccccCCCC
Confidence            9999999999999999999999999999999998                                    6679999999


Q ss_pred             CcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecC
Q 012799          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY  418 (456)
Q Consensus       339 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~  418 (456)
                      .++++||+.++. .++.+.||.++|++++|||+|++|++|+.||.|++||+.+|+++..+.+|++.|.++          
T Consensus       557 ~tVRlWDv~~G~-~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sl----------  625 (707)
T KOG0263|consen  557 RTVRLWDVSTGN-SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSL----------  625 (707)
T ss_pred             ceEEEEEcCCCc-EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEE----------
Confidence            999999977654 577789999999999999999999999999999999999999999999999999999          


Q ss_pred             CCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                       .||.||..||+||.|.+|++|
T Consensus       626 -----------------sFS~dg~vLasgg~DnsV~lW  646 (707)
T KOG0263|consen  626 -----------------SFSRDGNVLASGGADNSVRLW  646 (707)
T ss_pred             -----------------EEecCCCEEEecCCCCeEEEE
Confidence                             889999999999999999999

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.8e-39  Score=299.20  Aligned_cols=287  Identities=33%  Similarity=0.553  Sum_probs=253.6

Q ss_pred             cccccCC-cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799          101 SATIAGH-TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (456)
Q Consensus       101 ~~~l~~h-~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  177 (456)
                      ...+.+| ...|.++.|+++|+++++++.|+.+++|+..+.+  ....+.+|...|.+++|+|+++++++++.|++|++|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            4445454 8899999999999999999999999999997777  677778999999999999999999999999999999


Q ss_pred             eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEE
Q 012799          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT  256 (456)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~  256 (456)
                      |+.......+.+.+|...|++++|+|     +++.+++|+.|++|++||+++++++..+.+|...|++++|++++ .+++
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p-----~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s  305 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSP-----DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS  305 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecC-----CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE
Confidence            99555344447889999999999999     88999999999999999999999999999999999999999999 8999


Q ss_pred             EeCCCcEEEEECCCCe--EEEEeecCCcc--eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799          257 GSQDCTIKVWETTQGK--LIRELKGHGHW--VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (456)
Q Consensus       257 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (456)
                      ++.|+.|++||+.++.  +...+..+...  +.++.|+|+                                    +.++
T Consensus       306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~------------------------------------~~~l  349 (456)
T KOG0266|consen  306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPN------------------------------------GKYL  349 (456)
T ss_pred             cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCC------------------------------------CcEE
Confidence            9999999999999998  56677665544  999999998                                    6779


Q ss_pred             EEEeCCCcEEEEecCCCCCCccccccccc---cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecc-cccEEEE
Q 012799          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQ---LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH-VGPVYQI  408 (456)
Q Consensus       333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i  408 (456)
                      ++++.|+.+++||+....... ...+|..   .+.+...++.+.++++|+.|+.|++||..++..+..+.+| ...+..+
T Consensus       350 l~~~~d~~~~~w~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~  428 (456)
T KOG0266|consen  350 LSASLDRTLKLWDLRSGKSVG-TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDL  428 (456)
T ss_pred             EEecCCCeEEEEEccCCccee-eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecc
Confidence            999999999999987665443 3455555   3445566789999999999999999999999999999999 8888888


Q ss_pred             EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEee--CCCceEEC
Q 012799          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVT  456 (456)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s--~Dg~v~iW  456 (456)
                                                 +|+|..+++++++  .|+.+++|
T Consensus       429 ---------------------------~~~~~~~~~~s~s~~~d~~~~~w  451 (456)
T KOG0266|consen  429 ---------------------------SSHPTENLIASSSFEGDGLIRLW  451 (456)
T ss_pred             ---------------------------ccCCCcCeeeecCcCCCceEEEe
Confidence                                       8899999999999  79999998

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.3e-38  Score=254.22  Aligned_cols=244  Identities=28%  Similarity=0.457  Sum_probs=222.8

Q ss_pred             eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEE
Q 012799          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (456)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~  223 (456)
                      +++++|.+.|.++.|++|.++|++++.||.+.|||.-+..... .+.-...+|..++|+|     .|+++++|+.|+...
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h-aipl~s~WVMtCA~sP-----Sg~~VAcGGLdN~Cs  122 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH-AIPLPSSWVMTCAYSP-----SGNFVACGGLDNKCS  122 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee-EEecCceeEEEEEECC-----CCCeEEecCcCceeE
Confidence            6788999999999999999999999999999999998877655 4555678999999999     999999999999999


Q ss_pred             EEECCCC------eEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeee
Q 012799          224 IWDVSLR------KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT  297 (456)
Q Consensus       224 iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  297 (456)
                      ||++.+.      ...+.+.+|.+.+.|+.|.+++.|++++.|.+..+||+++++.+..+.+|.+.|.+++++|.     
T Consensus       123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~-----  197 (343)
T KOG0286|consen  123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPS-----  197 (343)
T ss_pred             EEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCC-----
Confidence            9999855      44567889999999999999999999999999999999999999999999999999999994     


Q ss_pred             ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEE
Q 012799          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS  377 (456)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  377 (456)
                                                    +++.+++|+.|+..++||++.+ ..++.+.+|+..|++++|.|+|.-+++
T Consensus       198 ------------------------------~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afat  246 (343)
T KOG0286|consen  198 ------------------------------DGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFAT  246 (343)
T ss_pred             ------------------------------CCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeee
Confidence                                          2677999999999999998877 577889999999999999999999999


Q ss_pred             EECCCcEEEEeCCCCeEEEEEecc--cccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          378 ASFDKSIKLWNGTTGKFVAVFRGH--VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       378 ~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                      |+.|++.++||++..+.+..+...  ..+|+++                           +||..|++|++|..|.++.+
T Consensus       247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv---------------------------~FS~SGRlLfagy~d~~c~v  299 (343)
T KOG0286|consen  247 GSDDATCRLYDLRADQELAVYSHDSIICGITSV---------------------------AFSKSGRLLFAGYDDFTCNV  299 (343)
T ss_pred             cCCCceeEEEeecCCcEEeeeccCcccCCceeE---------------------------EEcccccEEEeeecCCceeE
Confidence            999999999999999998888732  2367777                           89999999999999999999


Q ss_pred             C
Q 012799          456 T  456 (456)
Q Consensus       456 W  456 (456)
                      |
T Consensus       300 W  300 (343)
T KOG0286|consen  300 W  300 (343)
T ss_pred             e
Confidence            9

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.7e-39  Score=286.44  Aligned_cols=328  Identities=25%  Similarity=0.407  Sum_probs=264.9

Q ss_pred             ecccccccccC-CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCC--EEEEEeCCC
Q 012799           96 PVNRCSATIAG-HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAG  172 (456)
Q Consensus        96 ~~~~~~~~l~~-h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg  172 (456)
                      +.+++++..+. |.+||.-++|+|.+.++++|+.|+.++|||+..+.....+.||.+.|.++.|+|+-+  .|++|..|+
T Consensus        92 ~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~  171 (775)
T KOG0319|consen   92 PTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDG  171 (775)
T ss_pred             ccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCc
Confidence            55678888888 999999999999999999999999999999999999999999999999999999654  588999999


Q ss_pred             eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEE--------------------------
Q 012799          173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD--------------------------  226 (456)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd--------------------------  226 (456)
                      .+++||+++..........|.+.|+++.|.+     ++..+++++.|..+.+||                          
T Consensus       172 ~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~-----d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~  246 (775)
T KOG0319|consen  172 TVRVWNLNDKRTCLHTMILHKSAVTSLAFSE-----DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREEL  246 (775)
T ss_pred             eEEEEEcccCchHHHHHHhhhhheeeeeecc-----CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhc
Confidence            9999999987764457888999999999988     444555555555555554                          


Q ss_pred             --------------------CCCCeEE-----------------------------------------------------
Q 012799          227 --------------------VSLRKCV-----------------------------------------------------  233 (456)
Q Consensus       227 --------------------~~~~~~~-----------------------------------------------------  233 (456)
                                          .+++++.                                                     
T Consensus       247 ~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI  326 (775)
T KOG0319|consen  247 GGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI  326 (775)
T ss_pred             CCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhh
Confidence                                2211110                                                     


Q ss_pred             --------------------------------EEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCC----eEEEE
Q 012799          234 --------------------------------ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG----KLIRE  276 (456)
Q Consensus       234 --------------------------------~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~----~~~~~  276 (456)
                                                      ..+.+|...|.++....+| .|++|+.|.++++|.++++    .++..
T Consensus       327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~  406 (775)
T KOG0319|consen  327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQ  406 (775)
T ss_pred             eeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhh
Confidence                                            1223677788888866677 9999999999999977443    24556


Q ss_pred             eecCCcceEEEEecCcc--eeeeccccCCCCccCChHH-------------HHHHHHhhhhhc-cCCCCCEEEEEeCCCc
Q 012799          277 LKGHGHWVNSLALSTEY--ALRTGAFDHTGKQYSSPEE-------------MKKAALERYNKI-KGNAPERLVSGSDDFT  340 (456)
Q Consensus       277 ~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~~~l~~~~~dg~  340 (456)
                      ..+|...|.+++++..+  .+.+++.|...+.|..+..             .....-...+.+ ..+....+++|+.|.+
T Consensus       407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt  486 (775)
T KOG0319|consen  407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT  486 (775)
T ss_pred             hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence            67899999999987654  4566666776666665541             011111112222 4567789999999999


Q ss_pred             EEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCC
Q 012799          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS  420 (456)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~  420 (456)
                      .++|++. .......+.+|...|.++.|+|..+.++|+|.|++|+||.+.+..+++++.||...|..+            
T Consensus       487 aKiW~le-~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra------------  553 (775)
T KOG0319|consen  487 AKIWDLE-QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA------------  553 (775)
T ss_pred             eeeeccc-CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee------------
Confidence            9999987 445677889999999999999999999999999999999999999999999999999999            


Q ss_pred             CceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       421 ~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                     .|-.+|+.|+|++.||-|+||
T Consensus       554 ---------------~F~~~~~qliS~~adGliKlW  574 (775)
T KOG0319|consen  554 ---------------SFIRNGKQLISAGADGLIKLW  574 (775)
T ss_pred             ---------------eeeeCCcEEEeccCCCcEEEE
Confidence                           889999999999999999999

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.7e-38  Score=281.14  Aligned_cols=295  Identities=27%  Similarity=0.443  Sum_probs=249.8

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcc--eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  176 (456)
                      ...+++.||-+.|+++.|+.|.++|++|+.|.++++|.++..+.  ...+.+|.+.|...-|..+...+++.+.||.+.+
T Consensus       136 vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~  215 (893)
T KOG0291|consen  136 VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFV  215 (893)
T ss_pred             eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEE
Confidence            34578889999999999999999999999999999999987665  5667899999999999999999999999999999


Q ss_pred             EeCCC-----------------------CCC-----c-----cccccCcccceEEEEecc--------------------
Q 012799          177 WDPQT-----------------------GKP-----S-----GNPLSGHKKWITGISWEP--------------------  203 (456)
Q Consensus       177 wd~~~-----------------------~~~-----~-----~~~~~~~~~~v~~~~~~~--------------------  203 (456)
                      |....                       ++.     .     ...+......|++.+|++                    
T Consensus       216 W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP  295 (893)
T KOG0291|consen  216 WTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP  295 (893)
T ss_pred             EEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence            98761                       110     0     000111224566666665                    


Q ss_pred             -----------------cccCCCCCEEEEEeCC-CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEE
Q 012799          204 -----------------VHLNAPCRRFVSASKD-GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIK  264 (456)
Q Consensus       204 -----------------~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~  264 (456)
                                       ..++..|+.++.|+.. |.+-+|+..+...+....+|...+++++++||| .+++|+.||.|+
T Consensus       296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK  375 (893)
T KOG0291|consen  296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK  375 (893)
T ss_pred             CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence                             1233356777776653 688888888888888888999999999999999 999999999999


Q ss_pred             EEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEE
Q 012799          265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (456)
Q Consensus       265 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  344 (456)
                      +||..++-++.++..|.+.|+.+.|+..                                    ++.+++++.||+|+.|
T Consensus       376 vWn~~SgfC~vTFteHts~Vt~v~f~~~------------------------------------g~~llssSLDGtVRAw  419 (893)
T KOG0291|consen  376 VWNTQSGFCFVTFTEHTSGVTAVQFTAR------------------------------------GNVLLSSSLDGTVRAW  419 (893)
T ss_pred             EEeccCceEEEEeccCCCceEEEEEEec------------------------------------CCEEEEeecCCeEEee
Confidence            9999999999999999999999999987                                    5669999999999999


Q ss_pred             ecCCCCCCccccccccccEeEEEECCCCCEEEEEECCC-cEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCce
Q 012799          345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY  423 (456)
Q Consensus       345 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~  423 (456)
                      |+..............-...|++..|.|.++++|+.|. .|++|++++|+++..+.||.+||.++               
T Consensus       420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l---------------  484 (893)
T KOG0291|consen  420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL---------------  484 (893)
T ss_pred             eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceee---------------
Confidence            98776655544445555678999999999999999886 69999999999999999999999999               


Q ss_pred             eeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       424 ~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                  +|+|+|..|++||.|.+||+|
T Consensus       485 ------------~f~~~~~~LaS~SWDkTVRiW  505 (893)
T KOG0291|consen  485 ------------SFSPDGSLLASGSWDKTVRIW  505 (893)
T ss_pred             ------------EEccccCeEEeccccceEEEE
Confidence                        889999999999999999999

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-38  Score=243.46  Aligned_cols=277  Identities=21%  Similarity=0.295  Sum_probs=245.6

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      ..+.|.+|.++|.++.|+-||+|.++++.|++|++|+...+..++++.+|...|..++.+.|+..+++|+.|..+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC--CeEEEEecCcCccEEEEEeCCCCeEEEE
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL--RKCVICLSGHTLAVTCVKWGGDGVIYTG  257 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~l~~~  257 (456)
                      ++|+... .+.+|.+.|..++|+.     +...+++|+.|.++++||.++  .++++.+......|.++..... .+++|
T Consensus        89 ~TGkv~R-r~rgH~aqVNtV~fNe-----esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h-eIvaG  161 (307)
T KOG0316|consen   89 NTGKVDR-RFRGHLAQVNTVRFNE-----ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH-EIVAG  161 (307)
T ss_pred             ccCeeee-ecccccceeeEEEecC-----cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc-EEEee
Confidence            9999876 7899999999999988     788999999999999999975  4678888888889999988754 89999


Q ss_pred             eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (456)
                      +.||+++.||++.|+.....  .+.+|++++++++                                    ++..++++.
T Consensus       162 S~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d------------------------------------~nc~La~~l  203 (307)
T KOG0316|consen  162 SVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKD------------------------------------GNCSLASSL  203 (307)
T ss_pred             ccCCcEEEEEeecceeehhh--cCCcceeEEecCC------------------------------------CCEEEEeec
Confidence            99999999999999876554  4568999999998                                    667999999


Q ss_pred             CCcEEEEecCCCCCCccccccccccE--eEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccccc-EEEEEeeeee
Q 012799          338 DFTMFLWEPAVSKQPKTRMTGHQQLV--NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP-VYQIRFELIY  414 (456)
Q Consensus       338 dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~  414 (456)
                      |+++++.| +...+.+....+|.+.-  ..++++.....+++|++||.|++||+.+...+..+..+... +.++      
T Consensus       204 ~stlrLlD-k~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl------  276 (307)
T KOG0316|consen  204 DSTLRLLD-KETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDL------  276 (307)
T ss_pred             cceeeecc-cchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEee------
Confidence            99999999 55556777788887643  45677777889999999999999999999999999988877 7888      


Q ss_pred             eecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (456)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~  449 (456)
                                           +++|.-..|+++..
T Consensus       277 ---------------------~~hp~~~~f~~A~~  290 (307)
T KOG0316|consen  277 ---------------------SCHPTMDDFITATG  290 (307)
T ss_pred             ---------------------ecccCccceeEecC
Confidence                                 77888776666654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-37  Score=278.13  Aligned_cols=309  Identities=23%  Similarity=0.406  Sum_probs=258.9

Q ss_pred             eecccccccccCCcccEEEEEECCCCCeEEEEECC-CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799           95 RPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGD-TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (456)
Q Consensus        95 ~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d-~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  173 (456)
                      .|...+++.|.-...+|..++|+..|++||.|+.. |.+.||+..+..-+...++|...+++++++|||+++|+|+.||.
T Consensus       294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK  373 (893)
T KOG0291|consen  294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK  373 (893)
T ss_pred             cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCc
Confidence            45667888888888899999999999999999754 89999999998888889999999999999999999999999999


Q ss_pred             EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc-CccEEEEEeCCCC
Q 012799          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDG  252 (456)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~  252 (456)
                      |+|||..++-+.. .+..|...|+.+.|+.     .++.+++++-||+|+.||+...+..+++... .....|++.+|.|
T Consensus       374 VKvWn~~SgfC~v-TFteHts~Vt~v~f~~-----~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG  447 (893)
T KOG0291|consen  374 VKVWNTQSGFCFV-TFTEHTSGVTAVQFTA-----RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG  447 (893)
T ss_pred             EEEEeccCceEEE-EeccCCCceEEEEEEe-----cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC
Confidence            9999999998876 6888999999999998     8999999999999999999999998888643 4567899999999


Q ss_pred             -eEEEEeCCC-cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCC
Q 012799          253 -VIYTGSQDC-TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (456)
Q Consensus       253 -~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (456)
                       .+++|+.|. .|.+|++.+|+.+..+.+|.++|.+++|+|.                                    +.
T Consensus       448 elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~------------------------------------~~  491 (893)
T KOG0291|consen  448 ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD------------------------------------GS  491 (893)
T ss_pred             CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc------------------------------------cC
Confidence             666777776 5999999999999999999999999999998                                    56


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       331 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      .|++++.|.+|++||+-........+ .+...+..++|+|+|+-||+++.||.|.+||++.+..+..+.+..+....=. 
T Consensus       492 ~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~-  569 (893)
T KOG0291|consen  492 LLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK-  569 (893)
T ss_pred             eEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc-
Confidence            69999999999999987665444433 4566799999999999999999999999999998887766654332111100 


Q ss_pred             eeeeeecCCCCcee--eecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          411 ELIYCFRYPSNFYC--VVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       411 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                              ......  ........+.+++|+||..+++||..+.|+|
T Consensus       570 --------~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCi  608 (893)
T KOG0291|consen  570 --------ETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICI  608 (893)
T ss_pred             --------ccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEE
Confidence                    000000  0112234555699999999999999999887

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=8.8e-37  Score=303.73  Aligned_cols=295  Identities=20%  Similarity=0.377  Sum_probs=236.3

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC----c----ceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCe
Q 012799          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----T----PMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGE  173 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~  173 (456)
                      .+.+|.+.|.+++|+|+|++||+|+.|+.|+||+....    .    +...+. +...+.+++|++ ++.+|++++.||+
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence            45679999999999999999999999999999997542    1    222333 456799999987 5789999999999


Q ss_pred             EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC-CC
Q 012799          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DG  252 (456)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~  252 (456)
                      |++||+.+++... .+.+|...|.+++|+|.    ++.+|++|+.||.|++||++++..+..+..+ ..+.++.|.+ ++
T Consensus       557 v~lWd~~~~~~~~-~~~~H~~~V~~l~~~p~----~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g  630 (793)
T PLN00181        557 VQVWDVARSQLVT-EMKEHEKRVWSIDYSSA----DPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESG  630 (793)
T ss_pred             EEEEECCCCeEEE-EecCCCCCEEEEEEcCC----CCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCC
Confidence            9999999887654 56789999999999862    5789999999999999999999888888654 6789999954 56


Q ss_pred             -eEEEEeCCCcEEEEECCCCe-EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCC
Q 012799          253 -VIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (456)
Q Consensus       253 -~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (456)
                       .+++|+.||.|++||+++++ .+..+.+|...|.++.|.+                                     +.
T Consensus       631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-------------------------------------~~  673 (793)
T PLN00181        631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-------------------------------------SS  673 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-------------------------------------CC
Confidence             89999999999999998865 5677788999999999863                                     45


Q ss_pred             EEEEEeCCCcEEEEecCCC-----CCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec-cccc
Q 012799          331 RLVSGSDDFTMFLWEPAVS-----KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGP  404 (456)
Q Consensus       331 ~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~  404 (456)
                      .+++++.|+.|++||++..     ..++..+.+|...+.+++|+|++.+|++|+.||.|++|+......+..+.. +...
T Consensus       674 ~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~  753 (793)
T PLN00181        674 TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP  753 (793)
T ss_pred             EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCc
Confidence            6999999999999998743     235566789999999999999999999999999999999876654433321 1111


Q ss_pred             EEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       405 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +..+               ...+....+..++|+|++.+|++|+.||.|+||
T Consensus       754 ~~~~---------------~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~  790 (793)
T PLN00181        754 VSGL---------------EVDDASQFISSVCWRGQSSTLVAANSTGNIKIL  790 (793)
T ss_pred             cccc---------------ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence            1100               000111223334999999999999999999998

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2e-39  Score=264.87  Aligned_cols=267  Identities=30%  Similarity=0.539  Sum_probs=235.1

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  186 (456)
                      ..+.|+|+.+.  ...+++|..|++|+|||.++-.++..+.||.+.|.|+.|  +.+.|++|+.|.+|++||+++++++.
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhh
Confidence            45789999985  557999999999999999999999999999999999999  66799999999999999999999987


Q ss_pred             ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE---EEEecCcCccEEEEEeCCCCeEEEEeCCCcE
Q 012799          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHTLAVTCVKWGGDGVIYTGSQDCTI  263 (456)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i  263 (456)
                       .+..|...|..+.|+.       .++++++.|.++.+||+.+...   ...+.+|...|+.+.|+.. ++++++.|.+|
T Consensus       272 -tlihHceaVLhlrf~n-------g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTi  342 (499)
T KOG0281|consen  272 -TLIHHCEAVLHLRFSN-------GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTI  342 (499)
T ss_pred             -HHhhhcceeEEEEEeC-------CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-eEEEecCCceE
Confidence             6888999999999965       7999999999999999987653   3445789999999999866 99999999999


Q ss_pred             EEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEE
Q 012799          264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (456)
Q Consensus       264 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  343 (456)
                      ++|++.+++.++++.+|...|.++.+.                                      +.++++|+.|.+|++
T Consensus       343 kvW~~st~efvRtl~gHkRGIAClQYr--------------------------------------~rlvVSGSSDntIRl  384 (499)
T KOG0281|consen  343 KVWSTSTCEFVRTLNGHKRGIACLQYR--------------------------------------DRLVVSGSSDNTIRL  384 (499)
T ss_pred             EEEeccceeeehhhhcccccceehhcc--------------------------------------CeEEEecCCCceEEE
Confidence            999999999999999999999998775                                      456999999999999


Q ss_pred             EecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe---------EEEEEecccccEEEEEeeeee
Q 012799          344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK---------FVAVFRGHVGPVYQIRFELIY  414 (456)
Q Consensus       344 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~i~~~~~~  414 (456)
                      ||+..+ .....+.||+.-|.++.|  |.+.+++|+.||+|++||+..+.         ++..+..|++.|..+      
T Consensus       385 wdi~~G-~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrL------  455 (499)
T KOG0281|consen  385 WDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRL------  455 (499)
T ss_pred             Eecccc-HHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEE------
Confidence            997655 567779999999999999  56789999999999999998753         234556788889888      


Q ss_pred             eecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                           .|  |...+++++.|.+|-||
T Consensus       456 ---------------------QF--D~fqIvsssHddtILiW  474 (499)
T KOG0281|consen  456 ---------------------QF--DEFQIISSSHDDTILIW  474 (499)
T ss_pred             ---------------------ee--cceEEEeccCCCeEEEE
Confidence                                 44  55789999999999998

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.3e-39  Score=268.09  Aligned_cols=268  Identities=23%  Similarity=0.407  Sum_probs=235.6

Q ss_pred             cEEEEEEeccc----------eEEEeecccc--cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe
Q 012799           80 KVLSIVYQPQA----------VFRIRPVNRC--SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT  147 (456)
Q Consensus        80 ~~~~~~~~~~~----------~~~~~~~~~~--~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~  147 (456)
                      .+..+.+.|..          .|.+|.....  ...++.|..+|+++.|+++|.++++|+.+|.|++|+..-.. ++.+.
T Consensus        98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~  176 (464)
T KOG0284|consen   98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQ  176 (464)
T ss_pred             ceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhh
Confidence            45667777763          3444544322  24568999999999999999999999999999999976443 44444


Q ss_pred             c-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEE
Q 012799          148 G-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD  226 (456)
Q Consensus       148 ~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  226 (456)
                      . |...|++++|+|+...+++++.||+|+|||....+... .+.+|.-.|.++.|+|     ....+++||.|..|++||
T Consensus       177 ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~-vL~GHgwdVksvdWHP-----~kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  177 AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER-VLRGHGWDVKSVDWHP-----TKGLIASGSKDNLVKLWD  250 (464)
T ss_pred             HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-eeccCCCCcceeccCC-----ccceeEEccCCceeEeec
Confidence            4 45999999999999999999999999999998877655 5799999999999999     778999999999999999


Q ss_pred             CCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCC
Q 012799          227 VSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (456)
Q Consensus       227 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  305 (456)
                      .+++.++.++.+|+..|..+.|.+++ +|++++.|..++++|+++.+.+..+++|...+.++.|+|-.            
T Consensus       251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~------------  318 (464)
T KOG0284|consen  251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN------------  318 (464)
T ss_pred             CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccc------------
Confidence            99999999999999999999999999 99999999999999999999999999999999999999973            


Q ss_pred             ccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEE
Q 012799          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK  385 (456)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~  385 (456)
                                             ...|.+|+.||.|..|.+.........-.+|...|.+++|+|=|.+|++|+.|.+++
T Consensus       319 -----------------------~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~r  375 (464)
T KOG0284|consen  319 -----------------------ESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVR  375 (464)
T ss_pred             -----------------------ccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCccee
Confidence                                   556999999999999998766666666679999999999999999999999999999


Q ss_pred             EEeC
Q 012799          386 LWNG  389 (456)
Q Consensus       386 iwd~  389 (456)
                      +|.-
T Consensus       376 fw~r  379 (464)
T KOG0284|consen  376 FWTR  379 (464)
T ss_pred             eecc
Confidence            9964

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.3e-37  Score=270.18  Aligned_cols=267  Identities=24%  Similarity=0.378  Sum_probs=246.8

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  180 (456)
                      .+++..|++.|.++.|+|...+++++-.+|.|.|||.++...+..+.-..-+|.+..|-+..+++++|+.|..|+||+.+
T Consensus         6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence            34567799999999999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-CeEEEEecCcCccEEEEEeCCCC--eEEEE
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG--VIYTG  257 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~--~l~~~  257 (456)
                      +++.+. .+..|...|.+++.+|     ...++++++.|-.|++||.+. ..+.+++.+|...|.+++|.|..  .++++
T Consensus        86 t~ekV~-~FeAH~DyIR~iavHP-----t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~  159 (794)
T KOG0276|consen   86 TGEKVK-TFEAHSDYIRSIAVHP-----TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA  159 (794)
T ss_pred             cceeeE-EeeccccceeeeeecC-----CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence            999876 7889999999999999     668999999999999999975 57889999999999999999966  99999


Q ss_pred             eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (456)
                      +.|++|++|.+.+..+..++.+|...|+++.+-+.+                                  +..++++|++
T Consensus       160 sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~g----------------------------------dkpylIsgaD  205 (794)
T KOG0276|consen  160 SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGG----------------------------------DKPYLISGAD  205 (794)
T ss_pred             eccccEEEEEcCCCCCceeeeccccCcceEEeccCC----------------------------------CcceEEecCC
Confidence            999999999999999999999999999999998753                                  3567999999


Q ss_pred             CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      |.++++||..+ +.+++.+.+|...|+.++|+|.-..+++|++||+++||+..+-++..++.-.-+.++++
T Consensus       206 D~tiKvWDyQt-k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I  275 (794)
T KOG0276|consen  206 DLTIKVWDYQT-KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCI  275 (794)
T ss_pred             CceEEEeecch-HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEE
Confidence            99999999654 56788899999999999999999999999999999999999988888887777888988

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.3e-37  Score=277.14  Aligned_cols=209  Identities=31%  Similarity=0.527  Sum_probs=199.2

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      ..++|.||.++|..+.|+|+.++|++++.|++||+|.+.+...+..+.+|..+|.++.|+|.|-|+||++.|++.++|..
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~  258 (456)
                      ....+.+ ++.+|...|.|+.|+|     +..++++||.|.+|++||+.+|..++.+.+|.++|++++|+|+| +|++|+
T Consensus       523 d~~~PlR-ifaghlsDV~cv~FHP-----Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~  596 (707)
T KOG0263|consen  523 DHNKPLR-IFAGHLSDVDCVSFHP-----NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD  596 (707)
T ss_pred             ccCCchh-hhcccccccceEEECC-----cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc
Confidence            9887776 8899999999999999     88999999999999999999999999999999999999999999 999999


Q ss_pred             CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (456)
                      .||.|.+||+.+++.+..+.+|.+.|.++.|+.+                                    +..|++|+.|
T Consensus       597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~d------------------------------------g~vLasgg~D  640 (707)
T KOG0263|consen  597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRD------------------------------------GNVLASGGAD  640 (707)
T ss_pred             cCCcEEEEEcCCCcchhhhhcccCceeEEEEecC------------------------------------CCEEEecCCC
Confidence            9999999999999999999999999999999998                                    5669999999


Q ss_pred             CcEEEEecCCCC
Q 012799          339 FTMFLWEPAVSK  350 (456)
Q Consensus       339 g~i~iwd~~~~~  350 (456)
                      .+|++||+....
T Consensus       641 nsV~lWD~~~~~  652 (707)
T KOG0263|consen  641 NSVRLWDLTKVI  652 (707)
T ss_pred             CeEEEEEchhhc
Confidence            999999976543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.5e-36  Score=267.44  Aligned_cols=290  Identities=26%  Similarity=0.381  Sum_probs=255.2

Q ss_pred             ccccccccCCcccEEEEEEC-CCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 012799           98 NRCSATIAGHTEAVLSVAFS-PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  176 (456)
                      .+.++.+-|.++.|..++|- |+.++||.++..+.+++|+..+..+. .+.+|...|.++....+|.+|++|+.|.++++
T Consensus       313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svil  391 (775)
T KOG0319|consen  313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL  391 (775)
T ss_pred             cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEE
Confidence            44567888999999999975 57789999999999999998776554 78899999999996668889999999999999


Q ss_pred             EeCCCCCCc---cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE-----E----EEecCcCccEE
Q 012799          177 WDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-----V----ICLSGHTLAVT  244 (456)
Q Consensus       177 wd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~----~~~~~~~~~v~  244 (456)
                      |.++++...   .....+|...|.+++++..    ....|+++|.|+++++|++...+.     .    .....|...|+
T Consensus       392 Wr~~~~~~~~~~~a~~~gH~~svgava~~~~----~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN  467 (775)
T KOG0319|consen  392 WRLNNNCSKSLCVAQANGHTNSVGAVAGSKL----GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDIN  467 (775)
T ss_pred             EEecCCcchhhhhhhhcccccccceeeeccc----CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccccc
Confidence            988554332   2246789999999999653    446899999999999999976221     1    12347999999


Q ss_pred             EEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799          245 CVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (456)
Q Consensus       245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (456)
                      |++++|+. .+++|+.|.+.++|++...+....+.+|...+.++.|++.                               
T Consensus       468 ~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~-------------------------------  516 (775)
T KOG0319|consen  468 CVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN-------------------------------  516 (775)
T ss_pred             ceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc-------------------------------
Confidence            99999988 9999999999999999999999999999999999999998                               


Q ss_pred             ccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc
Q 012799          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG  403 (456)
Q Consensus       324 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  403 (456)
                           .+.+++++.|++|+||.+.+. .....+.||...|..+.|-.+|+.|++++.||-+++|++++++++.++..|.+
T Consensus       517 -----dq~laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D  590 (775)
T KOG0319|consen  517 -----DQLLATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND  590 (775)
T ss_pred             -----cceeEeccCCceEEEEEeccc-eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc
Confidence                 566999999999999997765 46677999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       404 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .|+++                           +-++++.+++||+.||.|.+|
T Consensus       591 rvWaL---------------------------~~~~~~~~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  591 RVWAL---------------------------SVSPLLDMFVTGGGDGRIIFW  616 (775)
T ss_pred             eeEEE---------------------------eecCccceeEecCCCeEEEEe
Confidence            99999                           779999999999999999998

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.9e-37  Score=241.12  Aligned_cols=280  Identities=24%  Similarity=0.372  Sum_probs=248.2

Q ss_pred             cccCCcccEEEEEECC---CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          103 TIAGHTEAVLSVAFSP---DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~---~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      +..||+.+|..++|||   +|-+|++++.|+.-.+-+-+++.-+-++.+|.+.|.....+.+....++++.|-+-++||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            4579999999999986   8889999999999999999999999999999999999999998889999999999999999


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe-EEEEecCcCccEEEEEeCCCC-eEEEE
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTLAVTCVKWGGDG-VIYTG  257 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~-~l~~~  257 (456)
                      -+|..+.  ...|+.-|.+++|+.     +.++|++|+.+..+++||++..+ +...+.+|.+.|..+.|.... .++++
T Consensus        89 ~tgdelh--sf~hkhivk~~af~~-----ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   89 VTGDELH--SFEHKHIVKAVAFSQ-----DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhh--hhhhhheeeeEEecc-----cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence            9998875  556888899999998     88999999999999999998754 566788999999999998765 88888


Q ss_pred             eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (456)
                      +.|++||+||.++++.++++. ...+|+++.+++++.                                     +++-..
T Consensus       162 add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~-------------------------------------ilTia~  203 (334)
T KOG0278|consen  162 ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGR-------------------------------------ILTIAY  203 (334)
T ss_pred             ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCC-------------------------------------EEEEec
Confidence            999999999999999999987 567799999998742                                     566677


Q ss_pred             CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE-ecccccEEEEEeeeeeee
Q 012799          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQIRFELIYCF  416 (456)
Q Consensus       338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~  416 (456)
                      .+.|.+||...-..... . .-...|.+..++|+...+++|++|+.++.||..+|+.+..+ ++|.++|.++        
T Consensus       204 gssV~Fwdaksf~~lKs-~-k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcV--------  273 (334)
T KOG0278|consen  204 GSSVKFWDAKSFGLLKS-Y-KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCV--------  273 (334)
T ss_pred             CceeEEeccccccceee-c-cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEE--------
Confidence            78999999765443322 2 23455889999999999999999999999999999999986 8999999999        


Q ss_pred             cCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                         .|+|||...++||+||+||||
T Consensus       274 -------------------rFSPdGE~yAsGSEDGTirlW  294 (334)
T KOG0278|consen  274 -------------------RFSPDGELYASGSEDGTIRLW  294 (334)
T ss_pred             -------------------EECCCCceeeccCCCceEEEE
Confidence                               889999999999999999999

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.9e-37  Score=251.34  Aligned_cols=282  Identities=27%  Similarity=0.385  Sum_probs=249.8

Q ss_pred             CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE--------ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--------TGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  177 (456)
                      |....+.|..|+|||++|++|+.||.|.+||..+|+..+.+        --+..+|.|+.|+.|...+|+|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            55677889999999999999999999999999998765443        2478899999999999999999999999999


Q ss_pred             eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEE
Q 012799          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT  256 (456)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~  256 (456)
                      .+++|.++.+.-..|...|+++.|+.     |+..+++++.|.++++--+.+|+++..+++|...|+...|.++| .+++
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSr-----D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis  365 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSR-----DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS  365 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEcc-----CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence            99999999888889999999999999     89999999999999999999999999999999999999999999 9999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeec--CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          257 GSQDCTIKVWETTQGKLIRELKG--HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       257 ~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      ++.||+|++|+..+.+++.+++.  ...+|+++..-|.                                   +...++.
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK-----------------------------------npeh~iV  410 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK-----------------------------------NPEHFIV  410 (508)
T ss_pred             ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC-----------------------------------CCceEEE
Confidence            99999999999999999998865  3446777777665                                   2566888


Q ss_pred             EeCCCcEEEEecCCCCCCccccc---cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEee
Q 012799          335 GSDDFTMFLWEPAVSKQPKTRMT---GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE  411 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~  411 (456)
                      +...+++++.++..  +.++.+.   ...+...+.+.||.|.++.+.+.|+.++.|.+.+|++-..+.-|..-+..+   
T Consensus       411 CNrsntv~imn~qG--QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl---  485 (508)
T KOG0275|consen  411 CNRSNTVYIMNMQG--QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGL---  485 (508)
T ss_pred             EcCCCeEEEEeccc--eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccccc---
Confidence            99999999988542  2333332   123456677899999999999999999999999999999999999999888   


Q ss_pred             eeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                              +-+|..+.||+-++||.+++|
T Consensus       486 ------------------------~HHPHqNllAsYsEDgllKLW  506 (508)
T KOG0275|consen  486 ------------------------THHPHQNLLASYSEDGLLKLW  506 (508)
T ss_pred             ------------------------ccCcccchhhhhcccchhhhc
Confidence                                    779999999999999999999

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.6e-36  Score=272.32  Aligned_cols=281  Identities=25%  Similarity=0.424  Sum_probs=250.3

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 012799          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (456)
Q Consensus       104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  183 (456)
                      +..-+..|..++|+|...+++++-..|.|++||.+-+..+..+..|.++|..++|+|++.++++|+.|-.|++|+.++.+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence            34457789999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCc
Q 012799          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT  262 (456)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~  262 (456)
                      ++. .+.+|...|..+.|++     .-..++++|.|.+|+||+..+++++..+.+|...|.|..|+|.. .+++++.|.+
T Consensus        85 clf-tL~GHlDYVRt~~FHh-----eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT  158 (1202)
T KOG0292|consen   85 CLF-TLLGHLDYVRTVFFHH-----EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT  158 (1202)
T ss_pred             ehh-hhccccceeEEeeccC-----CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce
Confidence            887 7899999999999999     66799999999999999999999999999999999999999965 9999999999


Q ss_pred             EEEEECCCCe-----------------------------EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHH
Q 012799          263 IKVWETTQGK-----------------------------LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (456)
Q Consensus       263 i~iwd~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (456)
                      |++||+..-+                             ....+.+|...|+-.+|+|...                   
T Consensus       159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-------------------  219 (1202)
T KOG0292|consen  159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-------------------  219 (1202)
T ss_pred             EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-------------------
Confidence            9999985210                             1234567888888888888743                   


Q ss_pred             HHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-CCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799          314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  392 (456)
                                       .+++|++|..|++|.+...+ ..+....+|.+.|+++-|+|..+++++.|+|++|+|||+...
T Consensus       220 -----------------liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR  282 (1202)
T KOG0292|consen  220 -----------------LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR  282 (1202)
T ss_pred             -----------------eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence                             49999999999999976544 345567899999999999999999999999999999999999


Q ss_pred             eEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799          393 KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL  453 (456)
Q Consensus       393 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v  453 (456)
                      +.+++++...+.-+.+                           +-+|..+++++|-+.|.+
T Consensus       283 t~v~tfrrendRFW~l---------------------------aahP~lNLfAAgHDsGm~  316 (1202)
T KOG0292|consen  283 TSVQTFRRENDRFWIL---------------------------AAHPELNLFAAGHDSGMI  316 (1202)
T ss_pred             cceeeeeccCCeEEEE---------------------------EecCCcceeeeecCCceE
Confidence            9999998888888888                           778998888887766654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-36  Score=239.29  Aligned_cols=281  Identities=20%  Similarity=0.340  Sum_probs=238.6

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  182 (456)
                      .|+||..+++.+.++.+|.+|++++.|.+..||-..+|+.+-++.+|.+.|.|+..+.+.+++++|+.|.++++||+++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            47899999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             CCccccccCcccceEEEEecccccCCCCCEEEEEeC-----CCcEEEEECC-------CCeEEEEecCcCccEEEEEeCC
Q 012799          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-----DGDARIWDVS-------LRKCVICLSGHTLAVTCVKWGG  250 (456)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~  250 (456)
                      +.+.  ......+|..+.|++     +|++++....     .+.|.++|++       ..++...+..+...++.+-|.|
T Consensus        85 k~la--~~k~~~~Vk~~~F~~-----~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~  157 (327)
T KOG0643|consen   85 KQLA--TWKTNSPVKRVDFSF-----GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP  157 (327)
T ss_pred             cEEE--EeecCCeeEEEeecc-----CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence            9875  344567899999998     8888877654     4679999998       4566778888889999999999


Q ss_pred             CC-eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799          251 DG-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (456)
Q Consensus       251 ~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (456)
                      -+ .+++|..||.|.+||+++| +.+.....|...|+.+.++++                                    
T Consensus       158 l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d------------------------------------  201 (327)
T KOG0643|consen  158 LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD------------------------------------  201 (327)
T ss_pred             cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC------------------------------------
Confidence            88 9999999999999999998 455666789999999999998                                    


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCC--------------cEEEEeCCCCeE
Q 012799          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--------------SIKLWNGTTGKF  394 (456)
Q Consensus       329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg--------------~i~iwd~~~~~~  394 (456)
                      ..++++++.|.+-++||.++-....  ...-..+|++.+++|--..++.|+...              ..++|++-..+.
T Consensus       202 ~T~FiT~s~Dttakl~D~~tl~v~K--ty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEE  279 (327)
T KOG0643|consen  202 RTYFITGSKDTTAKLVDVRTLEVLK--TYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEE  279 (327)
T ss_pred             cceEEecccCccceeeeccceeeEE--EeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHH
Confidence            5669999999999999976544322  233467899999999777766654322              123333333445


Q ss_pred             EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       395 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                      +..+++|-+||+++                           +|+|+|+..++|++||.||+
T Consensus       280 igrvkGHFGPINsv---------------------------AfhPdGksYsSGGEDG~VR~  313 (327)
T KOG0643|consen  280 IGRVKGHFGPINSV---------------------------AFHPDGKSYSSGGEDGYVRL  313 (327)
T ss_pred             hccccccccCccee---------------------------EECCCCcccccCCCCceEEE
Confidence            67789999999999                           99999999999999999997

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=8.5e-37  Score=249.57  Aligned_cols=267  Identities=28%  Similarity=0.524  Sum_probs=232.3

Q ss_pred             CcccEEEEEEeccc--------eEEEeecc--cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE
Q 012799           77 SVEKVLSIVYQPQA--------VFRIRPVN--RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC  146 (456)
Q Consensus        77 ~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~  146 (456)
                      ....+..++|+...        ..++|+.+  .|.+.|.||++.|.|+.|.  .+.+++|+.|.+|+|||+++++++.++
T Consensus       196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl  273 (499)
T KOG0281|consen  196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL  273 (499)
T ss_pred             cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH
Confidence            45667888887543        45677654  5889999999999999995  569999999999999999999999999


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (456)
Q Consensus       147 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i  224 (456)
                      .+|...|..+.|+  ..++++++.|.++.+||+.....  ....+.+|...|..+.|+.       +++++++.|.+|++
T Consensus       274 ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~-------kyIVsASgDRTikv  344 (499)
T KOG0281|consen  274 IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-------KYIVSASGDRTIKV  344 (499)
T ss_pred             hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc-------ceEEEecCCceEEE
Confidence            9999999999996  45999999999999999986543  3346789999999999954       79999999999999


Q ss_pred             EECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCC
Q 012799          225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG  304 (456)
Q Consensus       225 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  304 (456)
                      |++.+.++++++.+|...|.|+.+... .+++|+.|.+|++||+..|.+++.+++|..-|.++.|...            
T Consensus       345 W~~st~efvRtl~gHkRGIAClQYr~r-lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k------------  411 (499)
T KOG0281|consen  345 WSTSTCEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK------------  411 (499)
T ss_pred             EeccceeeehhhhcccccceehhccCe-EEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCc------------
Confidence            999999999999999999999988633 8899999999999999999999999999999999999754            


Q ss_pred             CccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC--------ccccccccccEeEEEECCCCCEEE
Q 012799          305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP--------KTRMTGHQQLVNHVYFSPDGQWVA  376 (456)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~v~~~~~sp~~~~l~  376 (456)
                                                .+++|+.||+|++||+.....+        +..+..|.+.|..+.|  |...++
T Consensus       412 --------------------------rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIv  463 (499)
T KOG0281|consen  412 --------------------------RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQII  463 (499)
T ss_pred             --------------------------eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEE
Confidence                                      5999999999999998765543        3445678899999999  567799


Q ss_pred             EEECCCcEEEEeCCCCeEE
Q 012799          377 SASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       377 s~~~dg~i~iwd~~~~~~~  395 (456)
                      +++.|.+|.|||..++-.-
T Consensus       464 sssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  464 SSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             eccCCCeEEEEEcCCCCcc
Confidence            9999999999999876543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.1e-36  Score=246.36  Aligned_cols=268  Identities=26%  Similarity=0.569  Sum_probs=239.1

Q ss_pred             ccEEEEEEeccc----------eEEEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC-CcceeE
Q 012799           79 EKVLSIVYQPQA----------VFRIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFK  145 (456)
Q Consensus        79 ~~~~~~~~~~~~----------~~~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~-~~~~~~  145 (456)
                      .++..+.|.|..          .+++++  .+.+.+.|+||.+.|..++|+..|+++|+++.|-.+++||.++ .+++..
T Consensus       109 ~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks  188 (406)
T KOG0295|consen  109 SSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS  188 (406)
T ss_pred             cceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH
Confidence            345556666644          333443  3567899999999999999999999999999998899999987 567788


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEE
Q 012799          146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW  225 (456)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  225 (456)
                      +.+|+..|.++.|-|.|.+|+++++|.+|+.|++.+|..+. .+.+|...|..++.+.     ||..+++++.|.++++|
T Consensus       189 ~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~-t~~~h~ewvr~v~v~~-----DGti~As~s~dqtl~vW  262 (406)
T KOG0295|consen  189 LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK-TFPGHSEWVRMVRVNQ-----DGTIIASCSNDQTLRVW  262 (406)
T ss_pred             hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE-eccCchHhEEEEEecC-----CeeEEEecCCCceEEEE
Confidence            88999999999999999999999999999999999999887 6889999999998877     99999999999999999


Q ss_pred             ECCCCeEEEEecCcCccEEEEEeCCC--------------C--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEe
Q 012799          226 DVSLRKCVICLSGHTLAVTCVKWGGD--------------G--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLAL  289 (456)
Q Consensus       226 d~~~~~~~~~~~~~~~~v~~~~~~~~--------------~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  289 (456)
                      -+.++++...+..|..+|.|++|-|.              +  .+.+++.|++|++||+.++.++.++.+|..+|..++|
T Consensus       263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af  342 (406)
T KOG0295|consen  263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAF  342 (406)
T ss_pred             EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEE
Confidence            99999999999999999999999541              2  7889999999999999999999999999999999999


Q ss_pred             cCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEEC
Q 012799          290 STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS  369 (456)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s  369 (456)
                      +|.                                    |++|+++.+|+++++||+.+.. ....+..|+.-++++.|+
T Consensus       343 ~p~------------------------------------Gkyi~ScaDDktlrvwdl~~~~-cmk~~~ah~hfvt~lDfh  385 (406)
T KOG0295|consen  343 SPG------------------------------------GKYILSCADDKTLRVWDLKNLQ-CMKTLEAHEHFVTSLDFH  385 (406)
T ss_pred             cCC------------------------------------CeEEEEEecCCcEEEEEeccce-eeeccCCCcceeEEEecC
Confidence            998                                    6779999999999999987655 455567999999999999


Q ss_pred             CCCCEEEEEECCCcEEEEeC
Q 012799          370 PDGQWVASASFDKSIKLWNG  389 (456)
Q Consensus       370 p~~~~l~s~~~dg~i~iwd~  389 (456)
                      .+..++++|+-|..+++|..
T Consensus       386 ~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  386 KTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCCceEEeccccceeeeeec
Confidence            99999999999999999974

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.9e-36  Score=233.12  Aligned_cols=279  Identities=23%  Similarity=0.397  Sum_probs=234.0

Q ss_pred             EEEEECCC-CCeEEEE-------ECCCcEEEEeCCCCcceeEEe--cCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 012799          112 LSVAFSPD-GRQLASG-------SGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       112 ~~~~~s~~-~~~l~~~-------~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~  180 (456)
                      .++.|||- .++||.+       ...|++.|-++...+-+..+.  .-.+.+..++|++ ..+.+++++.||++++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            56888882 2334333       246889999986555444443  3567899999998 46788899999999999976


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEe
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGS  258 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~  258 (456)
                      ........++.|..+|.++.|.+.    ....+++++.|++|++|+...++.+.++.+|...|...+|+|..  .+++++
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~----~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S  167 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTV----RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS  167 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccc----cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence            544444468899999999999985    56788899999999999999999999999999999999999954  999999


Q ss_pred             CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (456)
                      .||++++||++.......+..|...+.+..|+.-                                   +...+++|+.|
T Consensus       168 gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky-----------------------------------~~~vl~Tg~vd  212 (311)
T KOG0277|consen  168 GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY-----------------------------------NHNVLATGGVD  212 (311)
T ss_pred             CCceEEEEEecCCCceeEEEeccceeEeeccccc-----------------------------------CCcEEEecCCC
Confidence            9999999999876555558889999999999865                                   35679999999


Q ss_pred             CcEEEEecCCCCCCccccccccccEeEEEECCC-CCEEEEEECCCcEEEEeCCCC-eEEEEEecccccEEEEEeeeeeee
Q 012799          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCF  416 (456)
Q Consensus       339 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~  416 (456)
                      +.|+.||++.-+.++..+.+|.-.|+.+.|||. ..+||+++.|-+++|||...+ ..+.+...|+..+..+        
T Consensus       213 ~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~--------  284 (311)
T KOG0277|consen  213 NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGL--------  284 (311)
T ss_pred             ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecc--------
Confidence            999999999999999999999999999999995 567999999999999998854 4566777899999999        


Q ss_pred             cCCCCceeeecccccccceeEec-CCCeEEEeeCCCceEEC
Q 012799          417 RYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~s~s~Dg~v~iW  456 (456)
                                         .||+ ++.++|+++.|+.++||
T Consensus       285 -------------------Dws~~~~~~vAs~gWDe~l~Vw  306 (311)
T KOG0277|consen  285 -------------------DWSLFDPGQVASTGWDELLYVW  306 (311)
T ss_pred             -------------------ccccccCceeeecccccceeee
Confidence                               6665 56799999999999999

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.3e-35  Score=262.86  Aligned_cols=282  Identities=27%  Similarity=0.415  Sum_probs=252.1

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  181 (456)
                      -++.||...|.++++|.+...+++|+ .+.+++|+..+.+++.++...  .+.+..|.|.++++++|...|.+.+||+.+
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS  443 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS  443 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence            46789999999999999988888875 558999999999999998643  899999999999999999999999999998


Q ss_pred             CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-----C--eEEEEec-----CcCccEEEEEeC
Q 012799          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----R--KCVICLS-----GHTLAVTCVKWG  249 (456)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~--~~~~~~~-----~~~~~v~~~~~~  249 (456)
                      ...+. ....|.+.|++++..|     ++..+++||.|.+|++||..-     +  +....+.     .-...|.|+.++
T Consensus       444 ~~l~E-ti~AHdgaIWsi~~~p-----D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S  517 (888)
T KOG0306|consen  444 ASLVE-TIRAHDGAIWSISLSP-----DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS  517 (888)
T ss_pred             hhhhh-hhhccccceeeeeecC-----CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence            88765 5669999999999999     999999999999999999741     1  1111111     235689999999


Q ss_pred             CCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799          250 GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (456)
Q Consensus       250 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (456)
                      ||+ +|+++--|+++++|-+.+-+...++-+|.-||.++.++|+                                    
T Consensus       518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D------------------------------------  561 (888)
T KOG0306|consen  518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD------------------------------------  561 (888)
T ss_pred             CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC------------------------------------
Confidence            999 8888889999999999999999999999999999999998                                    


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      +..+++|+.|..|++|-+.-+. +...+.+|++.|.++.|-|...++.++|.||.|+-||-...+.++.+.+|...|+++
T Consensus       562 SklivTgSADKnVKiWGLdFGD-CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cL  640 (888)
T KOG0306|consen  562 SKLIVTGSADKNVKIWGLDFGD-CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCL  640 (888)
T ss_pred             cCeEEeccCCCceEEeccccch-hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeee
Confidence            5569999999999999876554 556678999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                                 +.+|+|.+++++|.|.+||+|
T Consensus       641 ---------------------------av~~~G~~vvs~shD~sIRlw  661 (888)
T KOG0306|consen  641 ---------------------------AVSPNGSFVVSSSHDKSIRLW  661 (888)
T ss_pred             ---------------------------EEcCCCCeEEeccCCceeEee
Confidence                                       889999999999999999999

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.1e-36  Score=248.12  Aligned_cols=243  Identities=27%  Similarity=0.467  Sum_probs=221.6

Q ss_pred             ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (456)
Q Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~  221 (456)
                      ....+.+|.+.|.|+++.|.+.++++|+.|++|+|||+.+|+... .+.+|...|..+++++     --.++++++.|+.
T Consensus       143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-tltGhi~~vr~vavS~-----rHpYlFs~gedk~  216 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-TLTGHIETVRGVAVSK-----RHPYLFSAGEDKQ  216 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-eecchhheeeeeeecc-----cCceEEEecCCCe
Confidence            344567999999999999999999999999999999999998765 7889999999999998     4579999999999


Q ss_pred             EEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccc
Q 012799          222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (456)
Q Consensus       222 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  300 (456)
                      |+.||++..+.++.+.+|-..|.|++.+|.- .|++|+.|.++++||+++...+..+.+|..+|.++.+.|.        
T Consensus       217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~--------  288 (460)
T KOG0285|consen  217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT--------  288 (460)
T ss_pred             eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC--------
Confidence            9999999999999999999999999999976 9999999999999999999999999999999999998876        


Q ss_pred             cCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEEC
Q 012799          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF  380 (456)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~  380 (456)
                                                  ...+++|+.|++|++||++.++.. ..+..|...|.+++.+|....+|+++.
T Consensus       289 ----------------------------dpqvit~S~D~tvrlWDl~agkt~-~tlt~hkksvral~lhP~e~~fASas~  339 (460)
T KOG0285|consen  289 ----------------------------DPQVITGSHDSTVRLWDLRAGKTM-ITLTHHKKSVRALCLHPKENLFASASP  339 (460)
T ss_pred             ----------------------------CCceEEecCCceEEEeeeccCcee-EeeecccceeeEEecCCchhhhhccCC
Confidence                                        334999999999999998877654 457789999999999999999999998


Q ss_pred             CCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       381 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      |. |+-|++..|..++.+.+|..-|+++                           +...| .++++|++.|.+.+|
T Consensus       340 dn-ik~w~~p~g~f~~nlsgh~~iintl---------------------------~~nsD-~v~~~G~dng~~~fw  386 (460)
T KOG0285|consen  340 DN-IKQWKLPEGEFLQNLSGHNAIINTL---------------------------SVNSD-GVLVSGGDNGSIMFW  386 (460)
T ss_pred             cc-ceeccCCccchhhccccccceeeee---------------------------eeccC-ceEEEcCCceEEEEE
Confidence            86 8999999999999999999999999                           55655 488999999999987

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.9e-36  Score=230.82  Aligned_cols=243  Identities=21%  Similarity=0.375  Sum_probs=217.3

Q ss_pred             ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (456)
Q Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~  221 (456)
                      ....+..+.++|..+.|+-+|+|.++++.|.+|++|+...+..+. .+.+|..+|..++.+.     +...|++++.|..
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik-tYsghG~EVlD~~~s~-----Dnskf~s~GgDk~   82 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK-TYSGHGHEVLDAALSS-----DNSKFASCGGDKA   82 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee-eecCCCceeeeccccc-----cccccccCCCCce
Confidence            355677899999999999999999999999999999999998876 7899999999998877     8889999999999


Q ss_pred             EEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCC--eEEEEeecCCcceEEEEecCcceeeec
Q 012799          222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRTG  298 (456)
Q Consensus       222 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~  298 (456)
                      +.+||+++++.++.+.+|.+.|+.+.|+.+. .+++|+.|.++++||.++.  ++++.+......|.++.+...      
T Consensus        83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h------  156 (307)
T KOG0316|consen   83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH------  156 (307)
T ss_pred             EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc------
Confidence            9999999999999999999999999999988 9999999999999999874  678888888888999888754      


Q ss_pred             cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE
Q 012799          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA  378 (456)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  378 (456)
                                                      .+++|+.||+++.||++.+....- ..  ..+|++++|++|++....+
T Consensus       157 --------------------------------eIvaGS~DGtvRtydiR~G~l~sD-y~--g~pit~vs~s~d~nc~La~  201 (307)
T KOG0316|consen  157 --------------------------------EIVAGSVDGTVRTYDIRKGTLSSD-YF--GHPITSVSFSKDGNCSLAS  201 (307)
T ss_pred             --------------------------------EEEeeccCCcEEEEEeecceeehh-hc--CCcceeEEecCCCCEEEEe
Confidence                                            499999999999999988764433 23  3569999999999999999


Q ss_pred             ECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       379 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +.|+++++.|-.+|++++.+++|...-+.+.-                         +++.....+++||+||.|++|
T Consensus       202 ~l~stlrLlDk~tGklL~sYkGhkn~eykldc-------------------------~l~qsdthV~sgSEDG~Vy~w  254 (307)
T KOG0316|consen  202 SLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC-------------------------CLNQSDTHVFSGSEDGKVYFW  254 (307)
T ss_pred             eccceeeecccchhHHHHHhcccccceeeeee-------------------------eecccceeEEeccCCceEEEE
Confidence            99999999999999999999999987665522                         667777899999999999999

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.2e-37  Score=252.03  Aligned_cols=280  Identities=21%  Similarity=0.367  Sum_probs=236.0

Q ss_pred             cccccCCcccEEEEEECCCC-CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          101 SATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      +..|.||.+.|.|++=+|.. ..+|+|+.||.|++||+....+..++..|.+.|..|++..  ..+++++.|.+|+.|.+
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence            45678999999999999987 7899999999999999999999999999999999999976  67899999999999998


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEE
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTG  257 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~  257 (456)
                      +.. +.. .+ .....+..+.-+.     .++.++++|.  .|.|||.....++..+.-....|.++.|+|..  .|+++
T Consensus       137 ~~~-p~~-ti-lg~s~~~gIdh~~-----~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~  206 (433)
T KOG0268|consen  137 DGP-PLH-TI-LGKSVYLGIDHHR-----KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC  206 (433)
T ss_pred             cCC-cce-ee-ecccccccccccc-----ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee
Confidence            652 222 11 1233444554433     5567888886  49999999999999988778889999999966  78888


Q ss_pred             eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (456)
                      +.|+.|.+||++++.+++.+. ..-.-+.++|+|.                                    ...+++|++
T Consensus       207 ~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPe------------------------------------afnF~~a~E  249 (433)
T KOG0268|consen  207 ASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPE------------------------------------AFNFVAANE  249 (433)
T ss_pred             ccCCceEEEecccCCccceee-eeccccceecCcc------------------------------------ccceeeccc
Confidence            899999999999999887765 3345678999995                                    334899999


Q ss_pred             CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe-cccccEEEEEeeeeeee
Q 012799          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQIRFELIYCF  416 (456)
Q Consensus       338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~  416 (456)
                      |..++.||++.-..++....+|.+.|.++.|||.|+-+++||.|.+|+||..+.+.....+. .-...|.++        
T Consensus       250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~V--------  321 (433)
T KOG0268|consen  250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCV--------  321 (433)
T ss_pred             cccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEE--------
Confidence            99999999999999999999999999999999999999999999999999998775543331 112356777        


Q ss_pred             cCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                         .||.|.+++++||+|+.||+|
T Consensus       322 -------------------k~S~Dskyi~SGSdd~nvRlW  342 (433)
T KOG0268|consen  322 -------------------KYSMDSKYIISGSDDGNVRLW  342 (433)
T ss_pred             -------------------EEeccccEEEecCCCcceeee
Confidence                               999999999999999999999

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.6e-35  Score=237.55  Aligned_cols=247  Identities=22%  Similarity=0.414  Sum_probs=214.4

Q ss_pred             ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (456)
Q Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~  221 (456)
                      ++..+.+|++.|+.+.|+|+|.+||+|+.|..|.+|+......-...+.+|.+.|..+.|.+     +++.+++++.|.+
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-----d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-----DGSHILSCGTDKT  113 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-----CCCEEEEecCCce
Confidence            44567799999999999999999999999999999997655444446789999999999999     9999999999999


Q ss_pred             EEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecc
Q 012799          222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (456)
Q Consensus       222 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  299 (456)
                      ++.||++++++++..++|..-|+.+.....|  ++.+++.||++++||+++...++++. ....++++.|...       
T Consensus       114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~-------  185 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDT-------  185 (338)
T ss_pred             EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccc-------
Confidence            9999999999999999999999999966666  77889999999999999988888775 4567888998876       


Q ss_pred             ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEE
Q 012799          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (456)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~  379 (456)
                                                   ++.+++|+-|+.|++||++... ....+.+|.++|+.+..+|+|.++.+-+
T Consensus       186 -----------------------------s~qv~sggIdn~ikvWd~r~~d-~~~~lsGh~DtIt~lsls~~gs~llsns  235 (338)
T KOG0265|consen  186 -----------------------------SDQVISGGIDNDIKVWDLRKND-GLYTLSGHADTITGLSLSRYGSFLLSNS  235 (338)
T ss_pred             -----------------------------ccceeeccccCceeeeccccCc-ceEEeecccCceeeEEeccCCCcccccc
Confidence                                         5569999999999999987654 5667899999999999999999999999


Q ss_pred             CCCcEEEEeCCC----CeEEEEEecccc--cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799          380 FDKSIKLWNGTT----GKFVAVFRGHVG--PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL  453 (456)
Q Consensus       380 ~dg~i~iwd~~~----~~~~~~~~~~~~--~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v  453 (456)
                      .|.++++||++.    .+++..+.+|..  .++-+.                         .+|+|+++.+.+|+.|..+
T Consensus       236 Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~-------------------------cswsp~~~~i~ags~dr~v  290 (338)
T KOG0265|consen  236 MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK-------------------------CSWSPNGTKITAGSADRFV  290 (338)
T ss_pred             ccceEEEEEecccCCCCceEEEeecchhhhhhhcce-------------------------eeccCCCCccccccccceE
Confidence            999999999875    345777776543  222221                         1899999999999999999


Q ss_pred             EEC
Q 012799          454 KVT  456 (456)
Q Consensus       454 ~iW  456 (456)
                      ++|
T Consensus       291 yvw  293 (338)
T KOG0265|consen  291 YVW  293 (338)
T ss_pred             EEe
Confidence            999

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.3e-35  Score=255.54  Aligned_cols=278  Identities=20%  Similarity=0.339  Sum_probs=241.1

Q ss_pred             CcccEEEEEEeccceEE----------Eee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee
Q 012799           77 SVEKVLSIVYQPQAVFR----------IRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF  144 (456)
Q Consensus        77 ~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~  144 (456)
                      +++++..+.++|.+.+-          +|.  ....++.+.--..+|.+..|-+..+++++|+.|..|+||+.++++.+.
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~   91 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK   91 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeE
Confidence            56777777887766442          332  234567777888999999999999999999999999999999999999


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (456)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i  224 (456)
                      .+..|.+.|.|++.+|...++++++.|-+|++||++.+-...+.+.+|...|.+++|.|.    |.+.|++++-|++|++
T Consensus        92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk----D~ntFaS~sLDrTVKV  167 (794)
T KOG0276|consen   92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK----DPNTFASASLDRTVKV  167 (794)
T ss_pred             EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC----CccceeeeeccccEEE
Confidence            999999999999999999999999999999999999887777789999999999999995    6789999999999999


Q ss_pred             EECCCCeEEEEecCcCccEEEEEeCCCC---eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecccc
Q 012799          225 WDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (456)
Q Consensus       225 wd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  301 (456)
                      |.+.+..+..++.+|...|+|+.+-+.|   +|++|+.|.++++||..+..+++++.+|...|..+.|+|...+      
T Consensus       168 Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpi------  241 (794)
T KOG0276|consen  168 WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPI------  241 (794)
T ss_pred             EEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcE------
Confidence            9999999999999999999999999877   9999999999999999999999999999999999999998554      


Q ss_pred             CCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC
Q 012799          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD  381 (456)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d  381 (456)
                                                    +++|++||+++||+..+- .....+.-.-..+.|++-.+.++.++.|...
T Consensus       242 ------------------------------iisgsEDGTvriWhs~Ty-~lE~tLn~gleRvW~I~~~k~~~~i~vG~De  290 (794)
T KOG0276|consen  242 ------------------------------IISGSEDGTVRIWNSKTY-KLEKTLNYGLERVWCIAAHKGDGKIAVGFDE  290 (794)
T ss_pred             ------------------------------EEEecCCccEEEecCcce-ehhhhhhcCCceEEEEeecCCCCeEEEeccC
Confidence                                          999999999999995443 3334444456779999999988889999877


Q ss_pred             CcEEEEeCCCCeEEE
Q 012799          382 KSIKLWNGTTGKFVA  396 (456)
Q Consensus       382 g~i~iwd~~~~~~~~  396 (456)
                      |.|.+ .+...++..
T Consensus       291 g~i~v-~lgreeP~v  304 (794)
T KOG0276|consen  291 GSVTV-KLGREEPAV  304 (794)
T ss_pred             CcEEE-EccCCCCce
Confidence            76554 444444433

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.7e-34  Score=225.37  Aligned_cols=267  Identities=27%  Similarity=0.446  Sum_probs=216.4

Q ss_pred             CcccEEEEEEeccc-----------eEEEeecc-----cccccc-cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC
Q 012799           77 SVEKVLSIVYQPQA-----------VFRIRPVN-----RCSATI-AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT  139 (456)
Q Consensus        77 ~~~~~~~~~~~~~~-----------~~~~~~~~-----~~~~~l-~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~  139 (456)
                      +.+++..+.++|..           .++++...     .|...| .+|+..|++++|+|.|++||+|+.|.++.||.-..
T Consensus        13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~   92 (312)
T KOG0645|consen   13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED   92 (312)
T ss_pred             CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence            44456666666652           34455443     244444 47999999999999999999999999999998654


Q ss_pred             C--cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--ccccccCcccceEEEEecccccCCCCCEEEE
Q 012799          140 Q--TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVS  215 (456)
Q Consensus       140 ~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~  215 (456)
                      +  +++..+.||...|.|++|+++|++||++++|..|.||.+..+..  ....+..|...|..+.|+|     ....|++
T Consensus        93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-----t~dlL~S  167 (312)
T KOG0645|consen   93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-----TEDLLFS  167 (312)
T ss_pred             CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-----CcceeEE
Confidence            3  67888999999999999999999999999999999999985543  2236889999999999999     7789999


Q ss_pred             EeCCCcEEEEECC---CCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecC
Q 012799          216 ASKDGDARIWDVS---LRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST  291 (456)
Q Consensus       216 ~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  291 (456)
                      ++.|.+|++|+-.   ...+..++.+|...|.+++|++.| ++++++.|++++||-..+.-.    ..|...+..++|. 
T Consensus       168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~-  242 (312)
T KOG0645|consen  168 CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD-  242 (312)
T ss_pred             eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec-
Confidence            9999999999866   457899999999999999999999 999999999999998653211    1256778888887 


Q ss_pred             cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC-CCC-----ccccccccccEeE
Q 012799          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-KQP-----KTRMTGHQQLVNH  365 (456)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~-----~~~~~~~~~~v~~  365 (456)
                      +                                     ..|++++.|+.|++|.-... ..+     ......|...|++
T Consensus       243 ~-------------------------------------~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs  285 (312)
T KOG0645|consen  243 N-------------------------------------GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS  285 (312)
T ss_pred             c-------------------------------------cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccce
Confidence            2                                     23999999999999974422 111     2234578889999


Q ss_pred             EEECCC-CCEEEEEECCCcEEEEeCC
Q 012799          366 VYFSPD-GQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       366 ~~~sp~-~~~l~s~~~dg~i~iwd~~  390 (456)
                      ++|+|. .++|++|+.||.|++|.+.
T Consensus       286 V~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  286 VQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEEcCCCCCceeecCCCceEEEEEec
Confidence            999994 7789999999999999864

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=7.8e-36  Score=249.13  Aligned_cols=285  Identities=25%  Similarity=0.392  Sum_probs=244.7

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  175 (456)
                      .++...+..|.+.|..+.|-++...|++|+.|..|++|++...+  .+.++.+..+.|+.+.|.++++++++++.|+.++
T Consensus       165 S~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  165 SRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR  244 (459)
T ss_pred             hhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence            45566788999999999999998999999999999999987666  6677888899999999999999999999999999


Q ss_pred             EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEE
Q 012799          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY  255 (456)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~  255 (456)
                      +|++...+... .+.+|...|+++.|..     ....+++|+.|.+|++||+....|..++. ....+.++..++ ..++
T Consensus       245 ~Wnvd~~r~~~-TLsGHtdkVt~ak~~~-----~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~-~~~~  316 (459)
T KOG0288|consen  245 LWNVDSLRLRH-TLSGHTDKVTAAKFKL-----SHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSI-SDVI  316 (459)
T ss_pred             eeeccchhhhh-hhcccccceeeehhhc-----cccceeeccccchhhhhhhhhhheecccc-ccccccceEecc-eeee
Confidence            99999988766 6888999999999987     44559999999999999999988877764 234455565552 2788


Q ss_pred             EEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (456)
Q Consensus       256 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (456)
                      +|..|+.|++||.++..+......++ .|+++..+++                                    +..++++
T Consensus       317 SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~------------------------------------g~~lLss  359 (459)
T KOG0288|consen  317 SGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMD------------------------------------GLELLSS  359 (459)
T ss_pred             ecccccceEEEeccCCceeeEeecCc-ceeeEeeccC------------------------------------CeEEeee
Confidence            99999999999999999999998665 8999999988                                    5568888


Q ss_pred             eCCCcEEEEecCCCCCCcc-----ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccccc--EEEE
Q 012799          336 SDDFTMFLWEPAVSKQPKT-----RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP--VYQI  408 (456)
Q Consensus       336 ~~dg~i~iwd~~~~~~~~~-----~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~i  408 (456)
                      +.|.++.+.|+++......     ...+|+  .+.+.|||++.|+++||.||.|+||++.++++...+......  |+++
T Consensus       360 sRDdtl~viDlRt~eI~~~~sA~g~k~asD--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~  437 (459)
T KOG0288|consen  360 SRDDTLKVIDLRTKEIRQTFSAEGFKCASD--WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSL  437 (459)
T ss_pred             cCCCceeeeecccccEEEEeeccccccccc--cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEE
Confidence            9999999999877542211     112333  889999999999999999999999999999999888765554  8888


Q ss_pred             EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                                 +|+|.|..|++++.++.+.+|
T Consensus       438 ---------------------------~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  438 ---------------------------SWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ---------------------------EEcCCCchhhcccCCcceEec
Confidence                                       999999999999999999999

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=8.1e-36  Score=233.09  Aligned_cols=277  Identities=28%  Similarity=0.437  Sum_probs=241.5

Q ss_pred             CcCcccEEEEEEec---cceEEEe------------ecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC
Q 012799           75 KVSVEKVLSIVYQP---QAVFRIR------------PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT  139 (456)
Q Consensus        75 ~~~~~~~~~~~~~~---~~~~~~~------------~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~  139 (456)
                      ..++.++..+.|+|   +..|.+.            ..+.-+-++.||.+.|.+...+.+...-|+++.|-+-+|||.-+
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~t   90 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT   90 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh
Confidence            34667777788775   3333332            22345789999999999999999999999999999999999999


Q ss_pred             CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC
Q 012799          140 QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD  219 (456)
Q Consensus       140 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d  219 (456)
                      +..+.++. |..-|.+++|+.|.++|++|+.+..++|||++..+.....+.+|.+.|..+.|..     ..+.+++++.|
T Consensus        91 gdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-----eD~~iLSSadd  164 (334)
T KOG0278|consen   91 GDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-----EDKCILSSADD  164 (334)
T ss_pred             hhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-----cCceEEeeccC
Confidence            99999887 9999999999999999999999999999999988776667899999999999988     77889999999


Q ss_pred             CcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecc
Q 012799          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (456)
Q Consensus       220 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  299 (456)
                      ++|++||.+++..+.++. ...+|+++.++++|.+++....+.|.+||..+-..++.+. ....|.+.+++|+       
T Consensus       165 ~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~-------  235 (334)
T KOG0278|consen  165 KTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPK-------  235 (334)
T ss_pred             CceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccCC-------
Confidence            999999999999999886 5788999999999988888888999999999988888877 3455888888887       


Q ss_pred             ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEE
Q 012799          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (456)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~  379 (456)
                                                   ...+++|++|+.++.||..++........+|-++|.|+.|+|+|...++|+
T Consensus       236 -----------------------------k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS  286 (334)
T KOG0278|consen  236 -----------------------------KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS  286 (334)
T ss_pred             -----------------------------CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC
Confidence                                         566999999999999998888776665689999999999999999999999


Q ss_pred             CCCcEEEEeCCCCeEE
Q 012799          380 FDKSIKLWNGTTGKFV  395 (456)
Q Consensus       380 ~dg~i~iwd~~~~~~~  395 (456)
                      .||+|++|.+..++..
T Consensus       287 EDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  287 EDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CCceEEEEEecCCCch
Confidence            9999999998766543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.6e-33  Score=239.07  Aligned_cols=286  Identities=21%  Similarity=0.341  Sum_probs=242.4

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce--eEEecCCCCEEEEEEcCCCCEEEEEeCC--CeEEE
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSKA--GELQC  176 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~i~v  176 (456)
                      ...+.+|..+++-..|+|.|.|+|+|...|+|||||....+.+  .+++.-.++|..++|++++++|++.++.  +-.++
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~  131 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV  131 (603)
T ss_pred             eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence            4557789999999999999999999999999999998764433  4566778999999999999999987653  23344


Q ss_pred             EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEE
Q 012799          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY  255 (456)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~  255 (456)
                      +-+++|.... .+.+|...|.++.|-|..+    -++++|+.|+.|.+|+-..-+...++..|..-|.|+.|+||| +++
T Consensus       132 F~~DSG~SvG-ei~GhSr~ins~~~KpsRP----fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fa  206 (603)
T KOG0318|consen  132 FLWDSGNSVG-EITGHSRRINSVDFKPSRP----FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFA  206 (603)
T ss_pred             EEecCCCccc-eeeccceeEeeeeccCCCc----eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEE
Confidence            4444666665 5889999999999998543    479999999999999988888888888999999999999999 999


Q ss_pred             EEeCCCcEEEEECCCCeEEEEee---cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799          256 TGSQDCTIKVWETTQGKLIRELK---GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (456)
Q Consensus       256 ~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (456)
                      +++.||.+.+||-.+++.+..+.   +|.+.|.+++|+|+                                    +..+
T Consensus       207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD------------------------------------s~~~  250 (603)
T KOG0318|consen  207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD------------------------------------STQF  250 (603)
T ss_pred             EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC------------------------------------CceE
Confidence            99999999999999999999997   79999999999998                                    6679


Q ss_pred             EEEeCCCcEEEEecCCCCCCcccccccc--ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      ++++.|.+++|||+...........+..  ..-..+.|.  ...|++.+.+|.|.+++...+..+..+.+|...|+++  
T Consensus       251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL--  326 (603)
T KOG0318|consen  251 LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL--  326 (603)
T ss_pred             EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEE--
Confidence            9999999999999877643332222222  333445564  5579999999999999999999999999999999999  


Q ss_pred             eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                               +.+||+++|++|+.||.|.=|
T Consensus       327 -------------------------tv~~d~~~i~SgsyDG~I~~W  347 (603)
T KOG0318|consen  327 -------------------------TVSPDGKTIYSGSYDGHINSW  347 (603)
T ss_pred             -------------------------EEcCCCCEEEeeccCceEEEE
Confidence                                     889999999999999999877

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.2e-34  Score=255.29  Aligned_cols=337  Identities=24%  Similarity=0.369  Sum_probs=261.4

Q ss_pred             EEEEeccceEEEeecc--cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC
Q 012799           83 SIVYQPQAVFRIRPVN--RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA  160 (456)
Q Consensus        83 ~~~~~~~~~~~~~~~~--~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~  160 (456)
                      .+-|. +..++++...  ...-++.||..+|+++.|+..|..||+||.|+.|.+||+-...-+..+.+|...|+..-|..
T Consensus        81 AVGYa-DGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~  159 (888)
T KOG0306|consen   81 AVGYA-DGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN  159 (888)
T ss_pred             EEEec-CceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC
Confidence            44443 3445555444  56678899999999999999999999999999999999998888999999999999999998


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-----------
Q 012799          161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----------  229 (456)
Q Consensus       161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----------  229 (456)
                      +.+++++.+.|+.|++||+++..+.. ....|.+.++++++.+       +.+++++.|+.+++|++..           
T Consensus       160 ~~~~lvS~sKDs~iK~WdL~tqhCf~-Thvd~r~Eiw~l~~~~-------~~lvt~~~dse~~v~~L~~~~D~~~~~~~~  231 (888)
T KOG0306|consen  160 GDSFLVSVSKDSMIKFWDLETQHCFE-THVDHRGEIWALVLDE-------KLLVTAGTDSELKVWELAFEDDEKETNRYI  231 (888)
T ss_pred             CCeEEEEeccCceEEEEecccceeee-EEecccceEEEEEEec-------ceEEEEecCCceEEEEeecccccccccccc
Confidence            89999999999999999999987765 5677899999999865       6788888889999997500           


Q ss_pred             -------------CeEE---------------------------------------------------------------
Q 012799          230 -------------RKCV---------------------------------------------------------------  233 (456)
Q Consensus       230 -------------~~~~---------------------------------------------------------------  233 (456)
                                   ++.+                                                               
T Consensus       232 s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i  311 (888)
T KOG0306|consen  232 STKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEI  311 (888)
T ss_pred             eeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHH
Confidence                         0000                                                               


Q ss_pred             -------------------------------------------------------EEecCcCccEEEEEeCCCCeEEEEe
Q 012799          234 -------------------------------------------------------ICLSGHTLAVTCVKWGGDGVIYTGS  258 (456)
Q Consensus       234 -------------------------------------------------------~~~~~~~~~v~~~~~~~~~~l~~~~  258 (456)
                                                                             ..+.+|...|.+++++.+..++..+
T Consensus       312 ~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg  391 (888)
T KOG0306|consen  312 KRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG  391 (888)
T ss_pred             HHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec
Confidence                                                                   1122678889999999999776677


Q ss_pred             CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH-----HhhhhhccCCCCCEEE
Q 012799          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA-----LERYNKIKGNAPERLV  333 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~  333 (456)
                      ..+.+++|+..+.++++++... ....+--...+..+..+...+....+..........     ...+.....+++..++
T Consensus       392 a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~v  470 (888)
T KOG0306|consen  392 AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFV  470 (888)
T ss_pred             CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceE
Confidence            7788999999999998888655 334444444455555555555444443332221111     1223334567788999


Q ss_pred             EEeCCCcEEEEecCCCCC----Ccc-------ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccc
Q 012799          334 SGSDDFTMFLWEPAVSKQ----PKT-------RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV  402 (456)
Q Consensus       334 ~~~~dg~i~iwd~~~~~~----~~~-------~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  402 (456)
                      +|+.|.+|++||......    ...       ..-.-+..|.|+.+||||++||.+=.|++|+||-+.+.+..-.+.||.
T Consensus       471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk  550 (888)
T KOG0306|consen  471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK  550 (888)
T ss_pred             EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccc
Confidence            999999999999542111    111       111234679999999999999999999999999999999999999999


Q ss_pred             ccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       403 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      -||.++                           ..|||++.++|||.|.+|+||
T Consensus       551 LPV~sm---------------------------DIS~DSklivTgSADKnVKiW  577 (888)
T KOG0306|consen  551 LPVLSM---------------------------DISPDSKLIVTGSADKNVKIW  577 (888)
T ss_pred             cceeEE---------------------------eccCCcCeEEeccCCCceEEe
Confidence            999999                           889999999999999999999

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7e-34  Score=263.26  Aligned_cols=251  Identities=35%  Similarity=0.630  Sum_probs=220.6

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeC-CCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL-NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  178 (456)
                      ..+++.+|...|.+++|+|+++++++++.|++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|++||
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd  274 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD  274 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence            56777899999999999999999999999999999999 55688899999999999999999999999999999999999


Q ss_pred             CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe--EEEEecCcCcc--EEEEEeCCCC-e
Q 012799          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLA--VTCVKWGGDG-V  253 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~--v~~~~~~~~~-~  253 (456)
                      +++++... .+.+|...|.+++|.+     ++..+++++.|+.|++||+.++.  +...+..+...  +++++|+|++ +
T Consensus       275 ~~~~~~~~-~l~~hs~~is~~~f~~-----d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~  348 (456)
T KOG0266|consen  275 VRTGECVR-KLKGHSDGISGLAFSP-----DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY  348 (456)
T ss_pred             ccCCeEEE-eeeccCCceEEEEECC-----CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE
Confidence            99988776 7899999999999999     99999999999999999999999  56667666554  9999999999 9


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE
Q 012799          254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (456)
Q Consensus       254 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (456)
                      +++++.|+.+++||++.+.....+.+|...+.++ +++.                                ....+.+++
T Consensus       349 ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~-~~~~--------------------------------~~~~~~~i~  395 (456)
T KOG0266|consen  349 LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCI-FSPT--------------------------------LSTGGKLIY  395 (456)
T ss_pred             EEEecCCCeEEEEEccCCcceeeecccCCcceeE-eccc--------------------------------ccCCCCeEE
Confidence            9999999999999999999999998887753222 1111                                012367799


Q ss_pred             EEeCCCcEEEEecCCCCCCccccccc-cccEeEEEECCCCCEEEEEE--CCCcEEEEeCC
Q 012799          334 SGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASAS--FDKSIKLWNGT  390 (456)
Q Consensus       334 ~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd~~  390 (456)
                      +|+.|+.|++||+.. ...+..+.+| ...+..+.++|..+++++++  .|+.+++|...
T Consensus       396 sg~~d~~v~~~~~~s-~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  396 SGSEDGSVYVWDSSS-GGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EEeCCceEEEEeCCc-cchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999999999999766 5566678889 88999999999999999988  78999999753

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-33  Score=240.53  Aligned_cols=277  Identities=25%  Similarity=0.382  Sum_probs=239.0

Q ss_pred             CcccEEEEEECCCCCe-EEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc
Q 012799          107 HTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~-l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  185 (456)
                      ..+.|.+++|+|...+ +|+.+ .-.+.+|+..+.....++.-....|.++.|..||+++++|...|.|+++|..+ +.+
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~i  102 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVI  102 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHH
Confidence            4568999999996543 44444 34699999998888888888889999999999999999999999999999655 334


Q ss_pred             cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcE
Q 012799          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTI  263 (456)
Q Consensus       186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i  263 (456)
                      ...+.+|..++..+.|+|.    ++..|++|+.|+.+++||+.+......+.+|...|.|.+|+|..  .+++|+.||.|
T Consensus       103 LR~~~ah~apv~~~~f~~~----d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v  178 (487)
T KOG0310|consen  103 LRQLYAHQAPVHVTKFSPQ----DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV  178 (487)
T ss_pred             HHHHhhccCceeEEEeccc----CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence            4478899999999999994    67788999999999999999998877889999999999999965  89999999999


Q ss_pred             EEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEE
Q 012799          264 KVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (456)
Q Consensus       264 ~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  342 (456)
                      ++||.+.. ..+.++. |+.+|.++.+-|.                                    +..+++++ ...++
T Consensus       179 rl~DtR~~~~~v~eln-hg~pVe~vl~lps------------------------------------gs~iasAg-Gn~vk  220 (487)
T KOG0310|consen  179 RLWDTRSLTSRVVELN-HGCPVESVLALPS------------------------------------GSLIASAG-GNSVK  220 (487)
T ss_pred             EEEEeccCCceeEEec-CCCceeeEEEcCC------------------------------------CCEEEEcC-CCeEE
Confidence            99999987 5566665 8999999998886                                    34466555 45899


Q ss_pred             EEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCc
Q 012799          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF  422 (456)
Q Consensus       343 iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~  422 (456)
                      +||+..+.+.......|...|+|+++..++..|++|+-||.|++||+.+.+.+..+. -.++|.++              
T Consensus       221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsi--------------  285 (487)
T KOG0310|consen  221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSI--------------  285 (487)
T ss_pred             EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeE--------------
Confidence            999988888777777799999999999999999999999999999998888888877 67899999              


Q ss_pred             eeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       423 ~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                                   +.+||++.++.|..||.+-+
T Consensus       286 -------------avs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  286 -------------AVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             -------------EecCCCceEEEecccceeee
Confidence                         88999999999999998753

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1.6e-33  Score=259.49  Aligned_cols=272  Identities=33%  Similarity=0.589  Sum_probs=245.1

Q ss_pred             CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE-EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  184 (456)
                      .|...+.+..|.  +.++++++.|++|++|+..++..+.. +.+|.+.|.++++..-+.++++|+.|.++++||..+|++
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C  283 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC  283 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence            367788899998  55799999999999999999998888 999999999999987788999999999999999999998


Q ss_pred             ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEE
Q 012799          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK  264 (456)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~  264 (456)
                      .. .+.+|...|.++...+       ..+++|+.|.+|++|++.++.++..+.+|..+|.++..+ .+.+++|+.||+|+
T Consensus       284 ~~-~l~gh~stv~~~~~~~-------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~  354 (537)
T KOG0274|consen  284 TH-SLQGHTSSVRCLTIDP-------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVK  354 (537)
T ss_pred             EE-EecCCCceEEEEEccC-------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEE
Confidence            87 6789999999998765       578889999999999999999999999999999999999 44999999999999


Q ss_pred             EEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEE
Q 012799          265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (456)
Q Consensus       265 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  344 (456)
                      +||..++++++++.+|...|.++.+...                                     ..+++|+.|+.|++|
T Consensus       355 VW~~~~~~cl~sl~gH~~~V~sl~~~~~-------------------------------------~~~~Sgs~D~~IkvW  397 (537)
T KOG0274|consen  355 VWDPRTGKCLKSLSGHTGRVYSLIVDSE-------------------------------------NRLLSGSLDTTIKVW  397 (537)
T ss_pred             EEEhhhceeeeeecCCcceEEEEEecCc-------------------------------------ceEEeeeeccceEee
Confidence            9999999999999999999999987652                                     359999999999999


Q ss_pred             ecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec-ccccEEEEEeeeeeeecCCCCce
Q 012799          345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQIRFELIYCFRYPSNFY  423 (456)
Q Consensus       345 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~  423 (456)
                      |+++....+..+.+|...+..+.+  .+++|++++.||.|++||..+++++.++.+ |...|..+               
T Consensus       398 dl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l---------------  460 (537)
T KOG0274|consen  398 DLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSAL---------------  460 (537)
T ss_pred             cCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEe---------------
Confidence            988775677788999998877666  578999999999999999999999999998 67888877               


Q ss_pred             eeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       424 ~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                  ++.  ...+++++.||++++|
T Consensus       461 ------------~~~--~~~il~s~~~~~~~l~  479 (537)
T KOG0274|consen  461 ------------ALG--KEEILCSSDDGSVKLW  479 (537)
T ss_pred             ------------ecC--cceEEEEecCCeeEEE
Confidence                        444  5789999999999998

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.1e-33  Score=221.01  Aligned_cols=276  Identities=24%  Similarity=0.355  Sum_probs=239.5

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE--EecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWD  178 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd  178 (456)
                      +.+++|...|.+++|+-+|..||+|+.|+++.+|+++.......  ..+|.+.|-.++|+| +...+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            56789999999999999999999999999999999987755443  468999999999998 667999999999999999


Q ss_pred             CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE
Q 012799          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~  257 (456)
                      .+.+++...+.  ....-.-+.|+|     +|.++++++.|..|.+.|.++.+.....+ ....+..++|+.++ +++..
T Consensus        94 ~r~~k~~~~i~--~~~eni~i~wsp-----~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen   94 IRSGKCTARIE--TKGENINITWSP-----DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLT  165 (313)
T ss_pred             eccCcEEEEee--ccCcceEEEEcC-----CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEe
Confidence            99999875322  233445678999     99999999999999999999887766554 45567788888766 77777


Q ss_pred             eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (456)
                      ...|.|.|.....-+++..++.|.....++.|+|+                                    +.++++|+.
T Consensus       166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~------------------------------------GryfA~GsA  209 (313)
T KOG1407|consen  166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD------------------------------------GRYFATGSA  209 (313)
T ss_pred             cCCceEEEEeccccccccccccCCcceEEEEECCC------------------------------------CceEeeccc
Confidence            77799999999999999999999999999999998                                    677999999


Q ss_pred             CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeec
Q 012799          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (456)
Q Consensus       338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  417 (456)
                      |..+.+||+.. -...+.+..++-+|+.+.||.||++||+|++|..|-|=++++|..+..++ +.++...+         
T Consensus       210 DAlvSLWD~~E-LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tV---------  278 (313)
T KOG1407|consen  210 DALVSLWDVDE-LICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTV---------  278 (313)
T ss_pred             cceeeccChhH-hhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeE---------
Confidence            99999999653 34556677889999999999999999999999999999999999999887 78888888         


Q ss_pred             CCCCceeeecccccccceeEecCCCeEEEeeCC
Q 012799          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD  450 (456)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D  450 (456)
                                        +|+|...+||-+..|
T Consensus       279 ------------------AWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  279 ------------------AWHPKRPLLAYACDD  293 (313)
T ss_pred             ------------------EecCCCceeeEEecC
Confidence                              999999999987765

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-32  Score=221.62  Aligned_cols=282  Identities=23%  Similarity=0.333  Sum_probs=233.1

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEe
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWD  178 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd  178 (456)
                      .+.++.-.+.|+++.|+++|.+|++++.|.++++||..+++.+.++..+...+..+.|....+.++.++.  |.+|+..+
T Consensus         7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs   86 (311)
T KOG1446|consen    7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS   86 (311)
T ss_pred             ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence            3445567889999999999999999999999999999999999999989999999999987777777776  88999999


Q ss_pred             CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE
Q 012799          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~  257 (456)
                      +.+++.++ .+.+|...|.+++.+|     .++.+++++.|++|++||++..++...+.....+  .++|+|+| .++++
T Consensus        87 l~dNkylR-YF~GH~~~V~sL~~sP-----~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~  158 (311)
T KOG1446|consen   87 LHDNKYLR-YFPGHKKRVNSLSVSP-----KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALA  158 (311)
T ss_pred             eecCceEE-EcCCCCceEEEEEecC-----CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEe
Confidence            99999886 7999999999999999     6689999999999999999988887776544443  47899999 66666


Q ss_pred             eCCCcEEEEECCCC--eEEEEee---cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799          258 SQDCTIKVWETTQG--KLIRELK---GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (456)
Q Consensus       258 ~~dg~i~iwd~~~~--~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (456)
                      .....|++||++.-  .+..++.   ......+.+.|+|+                                    |.++
T Consensus       159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d------------------------------------GK~i  202 (311)
T KOG1446|consen  159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD------------------------------------GKSI  202 (311)
T ss_pred             cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC------------------------------------CCEE
Confidence            66669999999863  3444443   33667888999998                                    6679


Q ss_pred             EEEeCCCcEEEEecCCCCCCcccccccccc---EeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec-ccccEEEE
Q 012799          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQL---VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQI  408 (456)
Q Consensus       333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i  408 (456)
                      +.++..+.+++.|.-.+. ....+..+...   ....+|+||++++++|+.||+|.+|++++|..+..+++ +.+++.++
T Consensus       203 LlsT~~s~~~~lDAf~G~-~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~  281 (311)
T KOG1446|consen  203 LLSTNASFIYLLDAFDGT-VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCV  281 (311)
T ss_pred             EEEeCCCcEEEEEccCCc-EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccc
Confidence            999999999999966554 44444444332   25778999999999999999999999999999999998 68899888


Q ss_pred             EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                                 .|+|.-.+++|++  ..+-+|
T Consensus       282 ---------------------------~fnP~~~mf~sa~--s~l~fw  300 (311)
T KOG1446|consen  282 ---------------------------RFNPRYAMFVSAS--SNLVFW  300 (311)
T ss_pred             ---------------------------ccCCceeeeeecC--ceEEEE
Confidence                                       7788766776665  445555

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.2e-34  Score=223.51  Aligned_cols=243  Identities=28%  Similarity=0.518  Sum_probs=214.8

Q ss_pred             CcccEEEEEECCC-CCeEEEEECCCcEEEEeCCC-CcceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCC
Q 012799          107 HTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGK  183 (456)
Q Consensus       107 h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~  183 (456)
                      -.+.+..++|+++ .+.+++++.||++++||+.. ..++..++.|...|.++.|++ ++..+++++.|++|++|+...++
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            4678999999996 46788899999999999643 467888999999999999998 56678888999999999998888


Q ss_pred             CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCC
Q 012799          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDC  261 (456)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg  261 (456)
                      .+. .+.+|...|....|+|.    ..+.+++++.|+.+++||++.......+..|...+.|+.|+.-.  .+++|+.|+
T Consensus       139 Sv~-Tf~gh~~~Iy~a~~sp~----~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~  213 (311)
T KOG0277|consen  139 SVQ-TFNGHNSCIYQAAFSPH----IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDN  213 (311)
T ss_pred             ceE-eecCCccEEEEEecCCC----CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCc
Confidence            776 58899999999999996    56799999999999999998765555688999999999999855  899999999


Q ss_pred             cEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799          262 TIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (456)
Q Consensus       262 ~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  340 (456)
                      .|+.||+++- .++..+.+|+-.|+.+.++|..                                   ...|++++.|-+
T Consensus       214 ~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~-----------------------------------~~lLaSasYDmT  258 (311)
T KOG0277|consen  214 LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH-----------------------------------ASLLASASYDMT  258 (311)
T ss_pred             eEEEEehhhccccceeecCCceEEEEEecCcch-----------------------------------hhHhhhccccce
Confidence            9999999874 5788889999999999999973                                   445999999999


Q ss_pred             EEEEecCCCCCCccccccccccEeEEEECC-CCCEEEEEECCCcEEEEeC
Q 012799          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNG  389 (456)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~  389 (456)
                      ++|||.......+.+...|..-+..+.||+ ++.++|+++.|+.++||+.
T Consensus       259 ~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  259 VRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            999998888888888889999999999999 6778999999999999983

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.7e-32  Score=273.21  Aligned_cols=260  Identities=20%  Similarity=0.345  Sum_probs=218.0

Q ss_pred             CCcEEEEeCCCCcceeE-----EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC----cc--ccccCcccceE
Q 012799          129 DTTVRLWDLNTQTPMFK-----CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----SG--NPLSGHKKWIT  197 (456)
Q Consensus       129 d~~v~vwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~--~~~~~~~~~v~  197 (456)
                      +|.+++|+.........     +..|...|.+++|+|+++++++|+.|+.|++|+......    ..  .....+...+.
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  536 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS  536 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence            66788888776544333     335899999999999999999999999999999864211    00  01122346788


Q ss_pred             EEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC-CC-eEEEEeCCCcEEEEECCCCeEEE
Q 012799          198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DG-VIYTGSQDCTIKVWETTQGKLIR  275 (456)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~  275 (456)
                      +++|++.    .+.++++++.||.|++||+.+++.+..+.+|...|++++|+| ++ .|++|+.||.|++||++++..+.
T Consensus       537 ~l~~~~~----~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~  612 (793)
T PLN00181        537 GICWNSY----IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG  612 (793)
T ss_pred             eEEeccC----CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence            9999873    467899999999999999999999999999999999999997 55 89999999999999999998888


Q ss_pred             EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc
Q 012799          276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR  355 (456)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  355 (456)
                      .+..+ ..+.++.|++.                                   ++..+++|+.||.|++||++........
T Consensus       613 ~~~~~-~~v~~v~~~~~-----------------------------------~g~~latgs~dg~I~iwD~~~~~~~~~~  656 (793)
T PLN00181        613 TIKTK-ANICCVQFPSE-----------------------------------SGRSLAFGSADHKVYYYDLRNPKLPLCT  656 (793)
T ss_pred             EEecC-CCeEEEEEeCC-----------------------------------CCCEEEEEeCCCeEEEEECCCCCccceE
Confidence            88754 57888888553                                   2667999999999999998876656666


Q ss_pred             cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC------CeEEEEEecccccEEEEEeeeeeeecCCCCceeeeccc
Q 012799          356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT------GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS  429 (456)
Q Consensus       356 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~  429 (456)
                      +.+|...|.++.|. ++.+|++++.|+.|++||+..      ...+..+.+|...+..+                     
T Consensus       657 ~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v---------------------  714 (793)
T PLN00181        657 MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV---------------------  714 (793)
T ss_pred             ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE---------------------
Confidence            78999999999997 778999999999999999974      35678899999999988                     


Q ss_pred             ccccceeEecCCCeEEEeeCCCceEEC
Q 012799          430 CCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       430 ~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                            +|+|++++|++|+.||.|+||
T Consensus       715 ------~~s~~~~~lasgs~D~~v~iw  735 (793)
T PLN00181        715 ------GLSVSDGYIATGSETNEVFVY  735 (793)
T ss_pred             ------EEcCCCCEEEEEeCCCEEEEE
Confidence                  889999999999999999998

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-32  Score=244.21  Aligned_cols=271  Identities=25%  Similarity=0.418  Sum_probs=234.1

Q ss_pred             EEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCc
Q 012799          113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGH  192 (456)
Q Consensus       113 ~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  192 (456)
                      -+.|+ ..+.||.|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+........|
T Consensus       182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h  259 (484)
T KOG0305|consen  182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH  259 (484)
T ss_pred             Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence            45677 345677775 4479999999988666666668999999999999999999999999999999888777444449


Q ss_pred             ccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCC
Q 012799          193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ  270 (456)
Q Consensus       193 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~  270 (456)
                      ...|.+++|..       ..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++++ ++++|+.|+.+.|||...
T Consensus       260 ~~rvg~laW~~-------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~  332 (484)
T KOG0305|consen  260 ASRVGSLAWNS-------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS  332 (484)
T ss_pred             CceeEEEeccC-------ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC
Confidence            99999999964       7899999999999999998876665 88999999999999999 999999999999999988


Q ss_pred             CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE--eCCCcEEEEecCC
Q 012799          271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG--SDDFTMFLWEPAV  348 (456)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~  348 (456)
                      ..+...+..|...|..++|+|-.                                   ...||+|  +.|+.|++||..+
T Consensus       333 ~~p~~~~~~H~aAVKA~awcP~q-----------------------------------~~lLAsGGGs~D~~i~fwn~~~  377 (484)
T KOG0305|consen  333 PEPKFTFTEHTAAVKALAWCPWQ-----------------------------------SGLLATGGGSADRCIKFWNTNT  377 (484)
T ss_pred             ccccEEEeccceeeeEeeeCCCc-----------------------------------cCceEEcCCCcccEEEEEEcCC
Confidence            89999999999999999999973                                   4557776  4699999999876


Q ss_pred             CCCCccccccccccEeEEEECCCCCEEEE--EECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeee
Q 012799          349 SKQPKTRMTGHQQLVNHVYFSPDGQWVAS--ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV  426 (456)
Q Consensus       349 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~  426 (456)
                      +........  ...|.++.|++..+-|++  |..++.|.||+..+.+.+..+.+|...|..+                  
T Consensus       378 g~~i~~vdt--gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~l------------------  437 (484)
T KOG0305|consen  378 GARIDSVDT--GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYL------------------  437 (484)
T ss_pred             CcEeccccc--CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEE------------------
Confidence            654444333  466999999998876665  4567799999999999999999999999999                  


Q ss_pred             cccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       427 ~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                               +++|||..+++|+.|.++++|
T Consensus       438 ---------a~SPdg~~i~t~a~DETlrfw  458 (484)
T KOG0305|consen  438 ---------ALSPDGETIVTGAADETLRFW  458 (484)
T ss_pred             ---------EECCCCCEEEEecccCcEEec
Confidence                     999999999999999999999

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=8.2e-33  Score=227.68  Aligned_cols=272  Identities=19%  Similarity=0.301  Sum_probs=220.9

Q ss_pred             cCcCcccEEEEEEeccceE----------EEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc
Q 012799           74 HKVSVEKVLSIVYQPQAVF----------RIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT  141 (456)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~----------~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~  141 (456)
                      ...+...++.+...|...+          .+|..  +....++.||.+.|+++.|+.+|.+||||+.+|.|+||+..++.
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~  139 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG  139 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc
Confidence            3457778888888874322          12322  33667899999999999999999999999999999999999999


Q ss_pred             ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (456)
Q Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~  221 (456)
                      ....+...-..+.=+.|+|.+..|+.|+.||.+.+|.+.++... +.+.+|..++++-.|.|     +|+.++++..||+
T Consensus       140 ~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~-kv~~Gh~~~ct~G~f~p-----dGKr~~tgy~dgt  213 (399)
T KOG0296|consen  140 EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC-KVMSGHNSPCTCGEFIP-----DGKRILTGYDDGT  213 (399)
T ss_pred             eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee-eEecCCCCCcccccccC-----CCceEEEEecCce
Confidence            88888767778889999999999999999999999999986443 47899999999999999     9999999999999


Q ss_pred             EEEEECCCCeEEEEecC---------------------------------------------------cCccEEEEEeCC
Q 012799          222 ARIWDVSLRKCVICLSG---------------------------------------------------HTLAVTCVKWGG  250 (456)
Q Consensus       222 i~iwd~~~~~~~~~~~~---------------------------------------------------~~~~v~~~~~~~  250 (456)
                      |++||..+++++..+..                                                   +...+.|+.+.|
T Consensus       214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~  293 (399)
T KOG0296|consen  214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP  293 (399)
T ss_pred             EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence            99999998887766541                                                   011122233333


Q ss_pred             CC----eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799          251 DG----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (456)
Q Consensus       251 ~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (456)
                      ..    ..++|+.||+|.|||+...++..... |...|..+.|-+.                                  
T Consensus       294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~t----------------------------------  338 (399)
T KOG0296|consen  294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLNT----------------------------------  338 (399)
T ss_pred             cccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcCc----------------------------------
Confidence            22    45677888888888887765544444 6777888888762                                  


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       327 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                         .+|++++.+|.|+.||.++++ .+..+.+|...|.+++++|++++++|+|.|++.+||+..
T Consensus       339 ---~~l~t~c~~g~v~~wDaRtG~-l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  339 ---DYLLTACANGKVRQWDARTGQ-LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             ---chheeeccCceEEeeeccccc-eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence               359999999999999977664 677789999999999999999999999999999999864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-32  Score=250.28  Aligned_cols=271  Identities=20%  Similarity=0.383  Sum_probs=229.9

Q ss_pred             cccEEEEEEeccceE----------EEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE
Q 012799           78 VEKVLSIVYQPQAVF----------RIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK  145 (456)
Q Consensus        78 ~~~~~~~~~~~~~~~----------~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~  145 (456)
                      +..+-.+.|+|...+          ++|+  -+.++..|.+|.++|..++|+|++.++++|+.|-.|+||+..+.+++.+
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft   88 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT   88 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence            344555666665533          3343  2567889999999999999999999999999999999999999999999


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEE
Q 012799          146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW  225 (456)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  225 (456)
                      +.+|-+.|..+.|++.-.+|+++|.|.+|+||++++++++. .+.+|...|.|..|+|     ....++++|-|.+|++|
T Consensus        89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia-vltGHnHYVMcAqFhp-----tEDlIVSaSLDQTVRVW  162 (1202)
T KOG0292|consen   89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA-VLTGHNHYVMCAQFHP-----TEDLIVSASLDQTVRVW  162 (1202)
T ss_pred             hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE-EEecCceEEEeeccCC-----ccceEEEecccceEEEE
Confidence            99999999999999999999999999999999999999887 7999999999999999     77899999999999999


Q ss_pred             ECCCCe-----------------------------EEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeE--
Q 012799          226 DVSLRK-----------------------------CVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL--  273 (456)
Q Consensus       226 d~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~--  273 (456)
                      |+..-+                             ....+.+|...|+-++|+|.- .+++|+.|..|++|.+...+.  
T Consensus       163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE  242 (1202)
T KOG0292|consen  163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE  242 (1202)
T ss_pred             eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccccee
Confidence            984210                             123567899999999999977 999999999999999876553  


Q ss_pred             EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCc
Q 012799          274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK  353 (456)
Q Consensus       274 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  353 (456)
                      +.+..+|...|.++-|+|.                                    .+.+++.++|+.|++||+... ..+
T Consensus       243 vDtcrgH~nnVssvlfhp~------------------------------------q~lIlSnsEDksirVwDm~kR-t~v  285 (1202)
T KOG0292|consen  243 VDTCRGHYNNVSSVLFHPH------------------------------------QDLILSNSEDKSIRVWDMTKR-TSV  285 (1202)
T ss_pred             ehhhhcccCCcceEEecCc------------------------------------cceeEecCCCccEEEEecccc-cce
Confidence            4566889999999999997                                    556999999999999997654 455


Q ss_pred             cccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799          354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       354 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  392 (456)
                      ..+....+..+.++.+|..+++++|. |+-+.+|.++.-
T Consensus       286 ~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRE  323 (1202)
T KOG0292|consen  286 QTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERE  323 (1202)
T ss_pred             eeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEccc
Confidence            55666667889999999999887765 666778877643

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2e-34  Score=245.53  Aligned_cols=250  Identities=25%  Similarity=0.437  Sum_probs=218.7

Q ss_pred             CcceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799          140 QTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (456)
Q Consensus       140 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~  218 (456)
                      .+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++.......+.+.+|..+|.+++|++     +|..|++++.
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-----~g~~fLS~sf  278 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-----CGTSFLSASF  278 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-----cCCeeeeeec
Confidence            345678889999999999999 8999999999999999999885545558999999999999999     9999999999


Q ss_pred             CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceee
Q 012799          219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (456)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  296 (456)
                      |+.+++||+++|+++..+. ....++|+.|.|++  .+++|+.|+.|+.||+++++.++++..|-+.|..+.|-++    
T Consensus       279 D~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~----  353 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE----  353 (503)
T ss_pred             ceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC----
Confidence            9999999999999999886 35678999999988  8999999999999999999999999999999999999988    


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA  376 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  376 (456)
                                                      +.++++.++|+.++||+.+..-........+.....++..+|++++++
T Consensus       354 --------------------------------g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~  401 (503)
T KOG0282|consen  354 --------------------------------GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFA  401 (503)
T ss_pred             --------------------------------CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeeh
Confidence                                            677999999999999998776655554445555678899999999999


Q ss_pred             EEECCCcEEEEeCCCC---eEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799          377 SASFDKSIKLWNGTTG---KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL  453 (456)
Q Consensus       377 s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v  453 (456)
                      .-+.|+.|.++.+...   .....+++|..+-.++..                         .|||||++|++|+.||.+
T Consensus       402 aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v-------------------------~fSpDG~~l~SGdsdG~v  456 (503)
T KOG0282|consen  402 AQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV-------------------------DFSPDGRTLCSGDSDGKV  456 (503)
T ss_pred             hhccCceEEEEecccccccCHhhhhcceeccCceeeE-------------------------EEcCCCCeEEeecCCccE
Confidence            9999999999997653   234467788766555533                         899999999999999999


Q ss_pred             EEC
Q 012799          454 KVT  456 (456)
Q Consensus       454 ~iW  456 (456)
                      .+|
T Consensus       457 ~~w  459 (503)
T KOG0282|consen  457 NFW  459 (503)
T ss_pred             EEe
Confidence            998

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.8e-32  Score=232.23  Aligned_cols=275  Identities=26%  Similarity=0.415  Sum_probs=230.6

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee-----------------EE-ecCCCCEEEEEEcCCC
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-----------------KC-TGHKNWVLCIAWSADG  162 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~-----------------~~-~~~~~~v~~~~~~~~~  162 (456)
                      ...+..|.-+|.+++++|++++.++++.+++|.-|++.+++...                 .- ..|...+.+++.++||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            34567899999999999999999999999999999988765320                 01 2688899999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc
Q 012799          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA  242 (456)
Q Consensus       163 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  242 (456)
                      ++|++|+.|..|.||+.++.+.+. .+.+|.+.|.+++|..     ....+++++.|+.|++|++.....+.++.+|+..
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~-~~~ghr~~V~~L~fr~-----gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~  288 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVK-VFKGHRGAVSSLAFRK-----GTSELYSASADRSVKVWSIDQLSYVETLYGHQDG  288 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhh-cccccccceeeeeeec-----CccceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence            999999999999999999999886 5899999999999987     6678999999999999999999999999999999


Q ss_pred             EEEEEeCCCCeEE-EEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799          243 VTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (456)
Q Consensus       243 v~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (456)
                      |..+.....+.++ +|+.|+++++|++.. .....+.++.+.+.++++-.+                             
T Consensus       289 v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-----------------------------  338 (479)
T KOG0299|consen  289 VLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-----------------------------  338 (479)
T ss_pred             eeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-----------------------------
Confidence            9999988877555 555999999999954 445566778888999988754                             


Q ss_pred             hhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc-----------cccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-----------QQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                              ..+++|+.+|.|.+|++.+.+.....-.+|           ..+|++++..|...++|+|+.+|.|++|-+.
T Consensus       339 --------~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  339 --------EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             --------cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence                    459999999999999977655433222222           2389999999999999999999999999998


Q ss_pred             CC----eEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEe
Q 012799          391 TG----KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG  447 (456)
Q Consensus       391 ~~----~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~  447 (456)
                      +|    +++..+. -.+.|+++                           +|+++|+.|++|
T Consensus       411 ~g~r~i~~l~~ls-~~GfVNsl---------------------------~f~~sgk~ivag  443 (479)
T KOG0299|consen  411 DGLRAINLLYSLS-LVGFVNSL---------------------------AFSNSGKRIVAG  443 (479)
T ss_pred             CCccccceeeecc-cccEEEEE---------------------------EEccCCCEEEEe
Confidence            87    4455555 56778888                           889999966655

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=5.7e-33  Score=223.92  Aligned_cols=307  Identities=22%  Similarity=0.363  Sum_probs=245.4

Q ss_pred             EEEEEeccceEE-EeecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC------------------Ccc
Q 012799           82 LSIVYQPQAVFR-IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT------------------QTP  142 (456)
Q Consensus        82 ~~~~~~~~~~~~-~~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~------------------~~~  142 (456)
                      +.++|+++..-. -.|..-....+..|..++.+.+|+|||.++|+|+.|..|+|.|++.                  ...
T Consensus        85 iDle~dadaq~~s~e~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPv  164 (430)
T KOG0640|consen   85 IDLEFDADAQGSSPEPSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPV  164 (430)
T ss_pred             eeeeeccccccCCCCCcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCce
Confidence            556666543221 1233334567889999999999999999999999999999999862                  124


Q ss_pred             eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (456)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~  221 (456)
                      ++++..|...|+++.|+|....|++|+.|++|+++|+....... ........+|.++.|+|     .|.++++|....+
T Consensus       165 IRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-----sGefllvgTdHp~  239 (430)
T KOG0640|consen  165 IRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-----SGEFLLVGTDHPT  239 (430)
T ss_pred             EeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-----CCceEEEecCCCc
Confidence            56777899999999999999999999999999999997543221 11223456799999999     9999999999999


Q ss_pred             EEEEECCCCeEEEEe---cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeec-C-CcceEEEEecCccee
Q 012799          222 ARIWDVSLRKCVICL---SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG-H-GHWVNSLALSTEYAL  295 (456)
Q Consensus       222 i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~  295 (456)
                      +++||+++-++...-   ..|.+.|+++.+++.+ +.++++.||.|++||--+++++.++.. | +..|.+..|..+   
T Consensus       240 ~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn---  316 (430)
T KOG0640|consen  240 LRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN---  316 (430)
T ss_pred             eeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC---
Confidence            999999999887654   3688999999999999 888999999999999999999988853 3 456888888887   


Q ss_pred             eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc----cccccEeEEEECCC
Q 012799          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT----GHQQLVNHVYFSPD  371 (456)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~sp~  371 (456)
                                                       +.++++.+.|..+++|.+.++........    +....-+...|+..
T Consensus       317 ---------------------------------~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht  363 (430)
T KOG0640|consen  317 ---------------------------------GKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT  363 (430)
T ss_pred             ---------------------------------CeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc
Confidence                                             66799999999999999887765444321    12222345567777


Q ss_pred             CCEEEEEE-CCCcEEEEeCCCCeEEEEEe-cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799          372 GQWVASAS-FDKSIKLWNGTTGKFVAVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (456)
Q Consensus       372 ~~~l~s~~-~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~  449 (456)
                      ..|++.-. ..+.+.-||.+++..+..+. +|.+++..+                           .-||.+.-+++||.
T Consensus       364 EdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i---------------------------~HSP~~p~FmTcsd  416 (430)
T KOG0640|consen  364 EDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI---------------------------VHSPVEPAFMTCSD  416 (430)
T ss_pred             cceEEccccccCceeeccccchhhhhhcccCCCCCceEE---------------------------EeCCCCCceeeecc
Confidence            77766543 34679999999987766554 899999999                           67999999999999


Q ss_pred             CCceEEC
Q 012799          450 DSTLKVT  456 (456)
Q Consensus       450 Dg~v~iW  456 (456)
                      |-..|+|
T Consensus       417 D~raRFW  423 (430)
T KOG0640|consen  417 DFRARFW  423 (430)
T ss_pred             cceeeee
Confidence            9999999

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.1e-33  Score=251.73  Aligned_cols=252  Identities=27%  Similarity=0.454  Sum_probs=205.0

Q ss_pred             ccccc-CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC----------------------------------------
Q 012799          101 SATIA-GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----------------------------------------  139 (456)
Q Consensus       101 ~~~l~-~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~----------------------------------------  139 (456)
                      .+.+. +|.+.|.++.||+||+|||+||.||.|+||.+..                                        
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            35566 8999999999999999999999999999998654                                        


Q ss_pred             --------------------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799          140 --------------------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI  199 (456)
Q Consensus       140 --------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  199 (456)
                                          .+++..+.||.+.|..+.|+.+ ++|++++.|.+|++|++....++.  ...|...|+|+
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~--~F~HndfVTcV  415 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLK--VFSHNDFVTCV  415 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceee--EEecCCeeEEE
Confidence                                0133445689999999999955 589999999999999999888875  67899999999


Q ss_pred             EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee
Q 012799          200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK  278 (456)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  278 (456)
                      +|+|.    |.++|++|+-||.|+||++...+.+.-.. -..-|++++|.|+| ..++|+.+|.+++|+....+......
T Consensus       416 aFnPv----DDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~  490 (712)
T KOG0283|consen  416 AFNPV----DDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH  490 (712)
T ss_pred             Eeccc----CCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence            99996    78999999999999999998877665544 34789999999999 89999999999999988766544332


Q ss_pred             cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc
Q 012799          279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG  358 (456)
Q Consensus       279 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  358 (456)
                                                                                    |.+   ...+    +. .
T Consensus       491 --------------------------------------------------------------I~~---~~~K----k~-~  500 (712)
T KOG0283|consen  491 --------------------------------------------------------------IRL---HNKK----KK-Q  500 (712)
T ss_pred             --------------------------------------------------------------Eee---ccCc----cc-c
Confidence                                                                          111   1111    12 2


Q ss_pred             ccccEeEEEECCC-CCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeE
Q 012799          359 HQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (456)
Q Consensus       359 ~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (456)
                      |. .|+.+.|.|. ...|++.+.|..|+|||.++.+++..|+|+...-..+.-                         .|
T Consensus       501 ~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~A-------------------------sf  554 (712)
T KOG0283|consen  501 GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISA-------------------------SF  554 (712)
T ss_pred             Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceee-------------------------eE
Confidence            33 6999999984 334667789999999999999999999977654433322                         78


Q ss_pred             ecCCCeEEEeeCCCceEEC
Q 012799          438 SADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       438 s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +.||++|+++++|..|+||
T Consensus       555 s~Dgk~IVs~seDs~VYiW  573 (712)
T KOG0283|consen  555 SSDGKHIVSASEDSWVYIW  573 (712)
T ss_pred             ccCCCEEEEeecCceEEEE
Confidence            9999999999999999999

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=5.9e-32  Score=227.43  Aligned_cols=278  Identities=21%  Similarity=0.334  Sum_probs=245.4

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      ..|.++...|....+++|+.|..+.++|..+++.+..+.||...|+.+.|+|+...+++++.|..|+||......... .
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~-~  298 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT-S  298 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc-c
Confidence            578888888887889999999999999999999999999999999999999999999999999999999987665443 6


Q ss_pred             ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC--cCccEEEEEeCCCC-eEEEEeCCCcEEE
Q 012799          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--HTLAVTCVKWGGDG-VIYTGSQDCTIKV  265 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~i  265 (456)
                      ...|..+|+.+..+|     .|.||++++.||...+.|++++.++.....  ..-.+++.+|+||| .|.+|..||.+++
T Consensus       299 ~~~h~~~V~~ls~h~-----tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki  373 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHP-----TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI  373 (506)
T ss_pred             cccccccceeeeecc-----CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence            788999999999999     999999999999999999999998776643  34568999999999 8889999999999


Q ss_pred             EECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEe
Q 012799          266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (456)
Q Consensus       266 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  345 (456)
                      ||+.++..+..|.+|.++|..++|+.+                                    |.+++++++|+.|++||
T Consensus       374 wdlks~~~~a~Fpght~~vk~i~FsEN------------------------------------GY~Lat~add~~V~lwD  417 (506)
T KOG0289|consen  374 WDLKSQTNVAKFPGHTGPVKAISFSEN------------------------------------GYWLATAADDGSVKLWD  417 (506)
T ss_pred             EEcCCccccccCCCCCCceeEEEeccC------------------------------------ceEEEEEecCCeEEEEE
Confidence            999999999999999999999999998                                    66699999999999999


Q ss_pred             cCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC--CCeEEEEEecccccEEEEEeeeeeeecCCCCce
Q 012799          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT--TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY  423 (456)
Q Consensus       346 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~  423 (456)
                      ++...............+.++.|.+.|.+|+.++.|=.|++++-.  +...+..+..|.+..+.+               
T Consensus       418 LRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v---------------  482 (506)
T KOG0289|consen  418 LRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGV---------------  482 (506)
T ss_pred             ehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccccee---------------
Confidence            998765544444444579999999999999999888777777643  456677788888888888               


Q ss_pred             eeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       424 ~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                                  .|....++++++|.|..+++
T Consensus       483 ------------~Fg~~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  483 ------------RFGEHAQYLASTSMDAILRL  502 (506)
T ss_pred             ------------eecccceEEeeccchhheEE
Confidence                        78888999999999998876

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.1e-31  Score=234.74  Aligned_cols=246  Identities=39%  Similarity=0.679  Sum_probs=219.5

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      ....+.+|...+.++.|+|+++++++++.||.|++|++.+++....+..|...+.++.|+++++++++++.||.+.+||+
T Consensus        43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~  122 (289)
T cd00200          43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV  122 (289)
T ss_pred             cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence            45677889999999999999999999999999999999988888888899999999999999889999888999999999


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~  258 (456)
                      .+++... .+..|...+.++.|+|     ++.++++++.|+.|++||+++++.+..+..|...+.++.|+|++ .+++++
T Consensus       123 ~~~~~~~-~~~~~~~~i~~~~~~~-----~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  196 (289)
T cd00200         123 ETGKCLT-TLRGHTDWVNSVAFSP-----DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS  196 (289)
T ss_pred             CCcEEEE-EeccCCCcEEEEEEcC-----cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec
Confidence            9776654 4557888999999999     67788888889999999999999888888899999999999999 888899


Q ss_pred             CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (456)
                      .+|.+++||++.++.+..+..+...+.++.++++                                    +.++++++.|
T Consensus       197 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~~~~~~~~~~  240 (289)
T cd00200         197 SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD------------------------------------GYLLASGSED  240 (289)
T ss_pred             CCCcEEEEECCCCceecchhhcCCceEEEEEcCC------------------------------------CcEEEEEcCC
Confidence            9999999999999998888788889999999987                                    4457777779


Q ss_pred             CcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (456)
Q Consensus       339 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  388 (456)
                      +.+++||+.... ....+..|...|.+++|+|++++|++++.||.+++|+
T Consensus       241 ~~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         241 GTIRVWDLRTGE-CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CcEEEEEcCCce-eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            999999976543 4445668888999999999999999999999999996

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-32  Score=230.29  Aligned_cols=274  Identities=23%  Similarity=0.366  Sum_probs=220.9

Q ss_pred             CcccEEEEEEeccceEEEee-------------c--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc
Q 012799           77 SVEKVLSIVYQPQAVFRIRP-------------V--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT  141 (456)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~  141 (456)
                      +...+.-+.|++...+....             .  -+..++|.||..+|..+.||||.++|++++.|..+.+||+.+|.
T Consensus       223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd  302 (519)
T KOG0293|consen  223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD  302 (519)
T ss_pred             CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch
Confidence            66778888888766432211             1  23568999999999999999999999999999999999999999


Q ss_pred             ceeEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC
Q 012799          142 PMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (456)
Q Consensus       142 ~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg  220 (456)
                      ....+. ++...+.+.+|.|||..+++|+.|+.+..||++....-. -.......|.+++..+     ||.++++.+.|.
T Consensus       303 ~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~-W~gvr~~~v~dlait~-----Dgk~vl~v~~d~  376 (519)
T KOG0293|consen  303 LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN-WEGVRDPKVHDLAITY-----DGKYVLLVTVDK  376 (519)
T ss_pred             hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc-ccccccceeEEEEEcC-----CCcEEEEEeccc
Confidence            887765 456889999999999999999999999999997554221 1222235688999888     999999999999


Q ss_pred             cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecc
Q 012799          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (456)
Q Consensus       221 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  299 (456)
                      .|++++.++......+. ...+|++++.+.++ ++++.-.+..+++||+...+.++.+.+|...-.-+.-.         
T Consensus       377 ~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC---------  446 (519)
T KOG0293|consen  377 KIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC---------  446 (519)
T ss_pred             ceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec---------
Confidence            99999988766554333 46789999999999 77778889999999999888888888876543322211         


Q ss_pred             ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC-CCCEEEEE
Q 012799          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASA  378 (456)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~  378 (456)
                                              +.+.+..++++|++|+.|+||+ +....++..+.||...|++++|+| +-.++|++
T Consensus       447 ------------------------Fgg~~~~fiaSGSED~kvyIWh-r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASa  501 (519)
T KOG0293|consen  447 ------------------------FGGGNDKFIASGSEDSKVYIWH-RISGKLLAVLSGHSKTVNCVSWNPADPEMFASA  501 (519)
T ss_pred             ------------------------cCCCCcceEEecCCCceEEEEE-ccCCceeEeecCCcceeeEEecCCCCHHHhhcc
Confidence                                    1122356799999999999999 556678888999999999999999 55669999


Q ss_pred             ECCCcEEEEeCCC
Q 012799          379 SFDKSIKLWNGTT  391 (456)
Q Consensus       379 ~~dg~i~iwd~~~  391 (456)
                      +.||+|+||....
T Consensus       502 sDDgtIRIWg~~~  514 (519)
T KOG0293|consen  502 SDDGTIRIWGPSD  514 (519)
T ss_pred             CCCCeEEEecCCc
Confidence            9999999998654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=3.1e-32  Score=254.28  Aligned_cols=281  Identities=26%  Similarity=0.425  Sum_probs=231.8

Q ss_pred             CCcccEEEEEECCCCCeEEEEE--CCCcEEEEeCCC------------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCC
Q 012799          106 GHTEAVLSVAFSPDGRQLASGS--GDTTVRLWDLNT------------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA  171 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~--~d~~v~vwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  171 (456)
                      .+...|.+++.+|||..+|||+  .|+.++||+.+.            .+.+.+...|.+.|+|+.|+|||++||+|+.|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            3566799999999999999999  999999998643            23455667899999999999999999999999


Q ss_pred             CeEEEEeCCC----------CC-------CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 012799          172 GELQCWDPQT----------GK-------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI  234 (456)
Q Consensus       172 g~i~vwd~~~----------~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  234 (456)
                      +.|.||....          |.       .....+.+|...|..++|+|     ++.++++++.|++|.+||..+.+.+.
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-----~~~~lvS~s~DnsViiwn~~tF~~~~  165 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-----DDSLLVSVSLDNSVIIWNAKTFELLK  165 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-----CccEEEEecccceEEEEccccceeee
Confidence            9999999873          00       01235778999999999999     89999999999999999999999999


Q ss_pred             EecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC------CcceEEEEecCcceeeeccccCCCCcc
Q 012799          235 CLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGH------GHWVNSLALSTEYALRTGAFDHTGKQY  307 (456)
Q Consensus       235 ~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~  307 (456)
                      .+.+|.+.|..+.|+|-| +|++-+.|++|++|+..+....+.+..+      ...+..+.|+|++              
T Consensus       166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG--------------  231 (942)
T KOG0973|consen  166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG--------------  231 (942)
T ss_pred             eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc--------------
Confidence            999999999999999999 9999999999999998776676666543      2356788899984              


Q ss_pred             CChHHHHHHHHhhhhhccCCCCCEEEEEe----CCCcEEEEecCCCCCCccccccccccEeEEEECCC-----CC-----
Q 012799          308 SSPEEMKKAALERYNKIKGNAPERLVSGS----DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-----GQ-----  373 (456)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~-----  373 (456)
                                            ++|++..    .-.++.|.+ +.....-..+.+|..++.++.|+|.     .+     
T Consensus       232 ----------------------~~las~nA~n~~~~~~~Iie-R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~  288 (942)
T KOG0973|consen  232 ----------------------HHLASPNAVNGGKSTIAIIE-RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST  288 (942)
T ss_pred             ----------------------CeecchhhccCCcceeEEEe-cCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence                                  4455442    233577777 4444455668899999999999982     11     


Q ss_pred             -------EEEEEECCCcEEEEeCCCCeEEEEEe-cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEE
Q 012799          374 -------WVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL  445 (456)
Q Consensus       374 -------~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  445 (456)
                             .+|+|+.|++|.||.....+++.... -...+|.++                           +|+|||..|+
T Consensus       289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~Dm---------------------------sWspdG~~Lf  341 (942)
T KOG0973|consen  289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDM---------------------------SWSPDGFSLF  341 (942)
T ss_pred             CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeee---------------------------eEcCCCCeEE
Confidence                   57889999999999998888766543 334578888                           9999999999


Q ss_pred             EeeCCCceEE
Q 012799          446 SGSKDSTLKV  455 (456)
Q Consensus       446 s~s~Dg~v~i  455 (456)
                      .+|.||+|.+
T Consensus       342 acS~DGtV~~  351 (942)
T KOG0973|consen  342 ACSLDGTVAL  351 (942)
T ss_pred             EEecCCeEEE
Confidence            9999999975

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=4.6e-31  Score=243.19  Aligned_cols=266  Identities=17%  Similarity=0.249  Sum_probs=205.7

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce-------------eEEecCCCCEEEEEEcC-CCCEEEEEeCCC
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-------------FKCTGHKNWVLCIAWSA-DGKHLVSGSKAG  172 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg  172 (456)
                      |-..|.....++++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            3445666666777666677766666667765433211             24678999999999999 889999999999


Q ss_pred             eEEEEeCCCCCC------ccccccCcccceEEEEecccccCCC-CCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEE
Q 012799          173 ELQCWDPQTGKP------SGNPLSGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTC  245 (456)
Q Consensus       173 ~i~vwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  245 (456)
                      +|++||+.++..      ....+.+|...|.+++|+|     + +++|++++.|+.|++||+++++.+..+.+|...|.+
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P-----~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~s  173 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHP-----SAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITS  173 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCc-----CCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEE
Confidence            999999976532      1224678999999999999     4 368999999999999999999999999999999999


Q ss_pred             EEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcc-eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799          246 VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (456)
Q Consensus       246 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (456)
                      ++|+|++ .|++++.|+.|++||+++++.+..+..|... ...+.|.++                               
T Consensus       174 la~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~-------------------------------  222 (493)
T PTZ00421        174 LEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR-------------------------------  222 (493)
T ss_pred             EEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC-------------------------------
Confidence            9999999 8999999999999999999999888887654 345566665                               


Q ss_pred             ccCCCCCEEEEEe----CCCcEEEEecCCCCCCccccccc-cccEeEEEECCCCCEEEEEE-CCCcEEEEeCCCCeEEEE
Q 012799          324 IKGNAPERLVSGS----DDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAV  397 (456)
Q Consensus       324 ~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~  397 (456)
                           ...+++++    .|+.|++||++....+......+ ...+....|++++++|++|+ .||.|++||+.+++++..
T Consensus       223 -----~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        223 -----KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC  297 (493)
T ss_pred             -----CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence                 23355443    57999999998766555443323 34566678999999999887 599999999999988776


Q ss_pred             Eec-ccccEEEEEeeee
Q 012799          398 FRG-HVGPVYQIRFELI  413 (456)
Q Consensus       398 ~~~-~~~~v~~i~~~~~  413 (456)
                      ... +..++..++|.+.
T Consensus       298 ~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        298 SSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             eeccCCCCCcceEeccc
Confidence            543 3445666655443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.1e-32  Score=220.45  Aligned_cols=289  Identities=24%  Similarity=0.387  Sum_probs=247.5

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  177 (456)
                      .+.++.|.||.+.|..++.......+.+++.|.+.+||.++++.++.++.+|.+.|++++|++.+.++++++.|++.+||
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            34678899999999999999888899999999999999999999999999999999999999999999999999999999


Q ss_pred             eC------CCC--------C-------------------------CccccccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799          178 DP------QTG--------K-------------------------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (456)
Q Consensus       178 d~------~~~--------~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~  218 (456)
                      ..      ...        +                         .....+.+|...|.+..|..     .|+.+++++.
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-----gg~Q~vTaSW  292 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-----GGQQMVTASW  292 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-----Ccceeeeeec
Confidence            72      110        0                         00113567888899999988     8899999999


Q ss_pred             CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceee
Q 012799          219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALR  296 (456)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~  296 (456)
                      |.+..+||++++..+..+.+|....+.++-+|.. .+++++.|.+.++||++.. ..+..|++|...|+++.|..+    
T Consensus       293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d----  368 (481)
T KOG0300|consen  293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD----  368 (481)
T ss_pred             cccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC----
Confidence            9999999999999999999999999999999988 7888999999999999853 356778999999999999875    


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA  376 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  376 (456)
                                                       +.+++|++|.+|++||+++...++..+. ..++++.++++..+..|+
T Consensus       369 ---------------------------------d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIA  414 (481)
T KOG0300|consen  369 ---------------------------------DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIA  414 (481)
T ss_pred             ---------------------------------CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEE
Confidence                                             4589999999999999999888777665 367899999999888999


Q ss_pred             EEECCCcEEEEeCCCCeEEE----EEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCC--CeEEEeeCC
Q 012799          377 SASFDKSIKLWNGTTGKFVA----VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS--RLLLSGSKD  450 (456)
Q Consensus       377 s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~s~s~D  450 (456)
                      .-..+..|++||++..++-.    .-.+|...|.++                           +|..+-  .-|+++|-|
T Consensus       415 iPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~---------------------------AW~eehp~cnLftcGFD  467 (481)
T KOG0300|consen  415 IPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCC---------------------------AWLEEHPACNLFTCGFD  467 (481)
T ss_pred             eccCCceEEEEecCCCccccCCcccccccceeeeee---------------------------eccccCccccccccccc
Confidence            98888999999986544322    335899999999                           776543  468889999


Q ss_pred             CceEEC
Q 012799          451 STLKVT  456 (456)
Q Consensus       451 g~v~iW  456 (456)
                      ..+.=|
T Consensus       468 R~v~gW  473 (481)
T KOG0300|consen  468 RMVAGW  473 (481)
T ss_pred             ceeeee
Confidence            887666

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=4.6e-32  Score=232.89  Aligned_cols=290  Identities=23%  Similarity=0.370  Sum_probs=233.0

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc----ceeEEe-cCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGE  173 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~  173 (456)
                      .+-..|++|+..|.++++.|.|..|++|+.|.+|++||+....    ..+.+. .....|.+++|++.|..|++.+....
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            4556789999999999999999999999999999999987532    122222 23457999999999999998888889


Q ss_pred             EEEEeCCCCCCcc-----------ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE-EEEe-----
Q 012799          174 LQCWDPQTGKPSG-----------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICL-----  236 (456)
Q Consensus       174 i~vwd~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~-----  236 (456)
                      .+|+|-.......           ....+|...+++.+|+|.    +...|++++.||++++||++..+. ...+     
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~----~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~  313 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD----NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA  313 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccC----cccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence            9999965433211           135789999999999995    456899999999999999976432 2222     


Q ss_pred             cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeE---EEEeecCCc--ceEEEEecCcceeeeccccCCCCccCCh
Q 012799          237 SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL---IRELKGHGH--WVNSLALSTEYALRTGAFDHTGKQYSSP  310 (456)
Q Consensus       237 ~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (456)
                      .+..-+++.++|++++ .+++|+.||.|.+|+......   ...-..|..  .|+++.|+++                  
T Consensus       314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d------------------  375 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD------------------  375 (641)
T ss_pred             CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc------------------
Confidence            2334578999999999 899999999999999865322   222234555  8999999998                  


Q ss_pred             HHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccccc--ccEeEEEECCCCCEEEEEEC------CC
Q 012799          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASF------DK  382 (456)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~~------dg  382 (456)
                                        +++|++-+.|+++++||++..++++....+-.  .+-+.++|||+.++|++|+.      .|
T Consensus       376 ------------------g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g  437 (641)
T KOG0772|consen  376 ------------------GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAG  437 (641)
T ss_pred             ------------------cchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCc
Confidence                              67799999999999999999888877665433  34678999999999999863      47


Q ss_pred             cEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       383 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                      .+.+||..+.+.++.+.-....|..+                           .|+|.-+.|+.|+.||+++|
T Consensus       438 ~L~f~d~~t~d~v~ki~i~~aSvv~~---------------------------~WhpkLNQi~~gsgdG~~~v  483 (641)
T KOG0772|consen  438 TLFFFDRMTLDTVYKIDISTASVVRC---------------------------LWHPKLNQIFAGSGDGTAHV  483 (641)
T ss_pred             eEEEEeccceeeEEEecCCCceEEEE---------------------------eecchhhheeeecCCCceEE
Confidence            89999999999998888777777777                           89999999999999999987

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.8e-32  Score=216.24  Aligned_cols=272  Identities=19%  Similarity=0.284  Sum_probs=217.6

Q ss_pred             CCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCC-cce-eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799          106 GHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-TPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (456)
Q Consensus       106 ~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~-~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  182 (456)
                      .-.+.|.+++||| ...++++++.||+||+|+++.. ... +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            3578999999999 5567778999999999999863 322 344579999999999999999999999999999999999


Q ss_pred             CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCc
Q 012799          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCT  262 (456)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~  262 (456)
                      +..  ....|..+|..+.|-+..   .-..|++|+.|++|+.||.+...++.++. -...+.++..-.. +++++..++.
T Consensus       105 Q~~--~v~~Hd~pvkt~~wv~~~---~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~p-m~vVata~r~  177 (347)
T KOG0647|consen  105 QVS--QVAAHDAPVKTCHWVPGM---NYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYP-MAVVATAERH  177 (347)
T ss_pred             Cee--eeeecccceeEEEEecCC---CcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCc-eeEEEecCCc
Confidence            765  478899999999998732   23589999999999999999998888775 3456666665433 8889999999


Q ss_pred             EEEEECCCCeEEEE-ee-cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799          263 IKVWETTQGKLIRE-LK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (456)
Q Consensus       263 i~iwd~~~~~~~~~-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  340 (456)
                      |.+|+++++..... +. ...-.+++++...+                                    .+..+.|+-+|.
T Consensus       178 i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d------------------------------------~~~~alGsiEGr  221 (347)
T KOG0647|consen  178 IAVYNLENPPTEFKRIESPLKWQTRCVACFQD------------------------------------KDGFALGSIEGR  221 (347)
T ss_pred             EEEEEcCCCcchhhhhcCcccceeeEEEEEec------------------------------------CCceEeeeecce
Confidence            99999987643221 11 13345778887776                                    444699999999


Q ss_pred             EEEEecCCCC-CCcccccccc---------ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799          341 MFLWEPAVSK-QPKTRMTGHQ---------QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       341 i~iwd~~~~~-~~~~~~~~~~---------~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      +.+..+.... ..-..++.|.         ..|++++|+|.-..|+|++.||++.+||-.....+...+.|..+|++.  
T Consensus       222 v~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc--  299 (347)
T KOG0647|consen  222 VAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCC--  299 (347)
T ss_pred             EEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCcccee--
Confidence            9998876642 2223344444         358899999988899999999999999988888888888999999999  


Q ss_pred             eeeeeecCCCCceeeecccccccceeEecCCCeEEEe
Q 012799          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG  447 (456)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~  447 (456)
                                               +|+.+|.++|-+
T Consensus       300 -------------------------~fn~~G~ifaYA  311 (347)
T KOG0647|consen  300 -------------------------SFNRNGSIFAYA  311 (347)
T ss_pred             -------------------------EecCCCCEEEEE
Confidence                                     788899887754

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.3e-31  Score=220.22  Aligned_cols=277  Identities=27%  Similarity=0.470  Sum_probs=231.2

Q ss_pred             hhHhhcCcCcccEEEEEEeccceEEEe-ecccccccccCCcccEEEEEECCCC---CeEEEEECCCcEEEEeCCCCcce-
Q 012799           69 SYLEKHKVSVEKVLSIVYQPQAVFRIR-PVNRCSATIAGHTEAVLSVAFSPDG---RQLASGSGDTTVRLWDLNTQTPM-  143 (456)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~h~~~V~~~~~s~~~---~~l~~~~~d~~v~vwd~~~~~~~-  143 (456)
                      ++...-+...+-++.-.|+  ...++| ..+++..++.||.++|.+++|.-..   ..|++++.|.++++|.++.+... 
T Consensus       106 DWVSsv~~~~~~IltgsYD--g~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~  183 (423)
T KOG0313|consen  106 DWVSSVKGASKWILTGSYD--GTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV  183 (423)
T ss_pred             hhhhhhcccCceEEEeecC--CeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh
Confidence            3444455556667777775  445566 4678999999999999988886433   35999999999999998876533 


Q ss_pred             ---eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC------------------------CccccccCcccce
Q 012799          144 ---FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK------------------------PSGNPLSGHKKWI  196 (456)
Q Consensus       144 ---~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------------------------~~~~~~~~~~~~v  196 (456)
                         ....||...|.+++..++|..+++|+.|..|.+|+..+..                        .....+.+|..+|
T Consensus       184 ~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~V  263 (423)
T KOG0313|consen  184 KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPV  263 (423)
T ss_pred             hHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccce
Confidence               3445999999999999999999999999999999932110                        0112467899999


Q ss_pred             EEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCe---
Q 012799          197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK---  272 (456)
Q Consensus       197 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~---  272 (456)
                      .++.|.+      ...+++++.|.+|+.||+.++..+..+.+ ...+.|+.++|.. +|++|+.|..+++||.+++.   
T Consensus       264 s~V~w~d------~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~  336 (423)
T KOG0313|consen  264 SSVVWSD------ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV  336 (423)
T ss_pred             eeEEEcC------CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence            9999986      35899999999999999999999888764 5678999999977 99999999999999999863   


Q ss_pred             EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC
Q 012799          273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP  352 (456)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  352 (456)
                      ...++.+|...|.++.|+|..                                   ...|++|+.|+++++||++....+
T Consensus       337 v~~s~~gH~nwVssvkwsp~~-----------------------------------~~~~~S~S~D~t~klWDvRS~k~p  381 (423)
T KOG0313|consen  337 VSQSLIGHKNWVSSVKWSPTN-----------------------------------EFQLVSGSYDNTVKLWDVRSTKAP  381 (423)
T ss_pred             eEEeeecchhhhhheecCCCC-----------------------------------ceEEEEEecCCeEEEEEeccCCCc
Confidence            457788999999999999984                                   446999999999999999999989


Q ss_pred             ccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       353 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                      +..+.+|...|.++.|+ ++.+|++|+.|.+++|+...
T Consensus       382 lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  382 LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            99999999999999997 56789999999999998743

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-31  Score=238.04  Aligned_cols=277  Identities=25%  Similarity=0.428  Sum_probs=236.6

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce--eEEecCCCCEEE-EEEcC-CCCEEEEEeCCCeE
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLC-IAWSA-DGKHLVSGSKAGEL  174 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~s~~~dg~i  174 (456)
                      +..+++.||...|..+++.+.. .++++|.||++++|+-..++-+  ..+.+|.+.|.+ +++-+ ++-.+++|+.|++|
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence            3467899999999999987654 6899999999999997655433  346678888877 88875 55579999999999


Q ss_pred             EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeE
Q 012799          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI  254 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l  254 (456)
                      .+|......+.. .+.+|...|.++....     ++. +++|+.|.++++|..  +++...+.+|...|.+++..|++.+
T Consensus        84 ~v~~~~~~~P~~-~LkgH~snVC~ls~~~-----~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~  154 (745)
T KOG0301|consen   84 IVFKLSQAEPLY-TLKGHKSNVCSLSIGE-----DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTY  154 (745)
T ss_pred             EEEecCCCCchh-hhhccccceeeeecCC-----cCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcE
Confidence            999999988877 7999999999998655     444 999999999999975  4556668999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      ++|+.|.+|++|.-  ++.++++.+|.+.|+.+++-++                                     ..+++
T Consensus       155 vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-------------------------------------~~flS  195 (745)
T KOG0301|consen  155 VTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-------------------------------------SHFLS  195 (745)
T ss_pred             EeccCcceeeeccC--CchhhhhccchhheeeeEEecC-------------------------------------CCeEe
Confidence            99999999999975  7899999999999999998875                                     23899


Q ss_pred             EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeee
Q 012799          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY  414 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~  414 (456)
                      ++.||.|++|++  ....+..+.+|+..|.++...+++..++++++|++++||+..  ++.+.+....-.|+++      
T Consensus       196 csNDg~Ir~w~~--~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa------  265 (745)
T KOG0301|consen  196 CSNDGSIRLWDL--DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSA------  265 (745)
T ss_pred             ecCCceEEEEec--cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEE------
Confidence            999999999997  344666788999999999988888999999999999999965  8888888777789988      


Q ss_pred             eecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                           .+-++| -+++|++||.||||
T Consensus       266 ---------------------~~L~Ng-DIvvg~SDG~VrVf  285 (745)
T KOG0301|consen  266 ---------------------KVLLNG-DIVVGGSDGRVRVF  285 (745)
T ss_pred             ---------------------EEeeCC-CEEEeccCceEEEE
Confidence                                 556666 47788999999997

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1e-30  Score=210.99  Aligned_cols=269  Identities=21%  Similarity=0.263  Sum_probs=221.5

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  186 (456)
                      -.+.|+++.|+|.+..|++++.||++++|++........+. |..++.+.+|.+ ...+++|+.||.|+.+|++++... 
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-   88 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-   88 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence            36789999999999999999999999999999876666655 999999999985 568999999999999999998876 


Q ss_pred             ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEE
Q 012799          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW  266 (456)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iw  266 (456)
                       .+..|...|.++.+.+     ....+++|++|++|++||.+.......+.. ...|.++....+ .|++|+.+..+.+|
T Consensus        89 -~igth~~~i~ci~~~~-----~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g~-~LvVg~~~r~v~iy  160 (323)
T KOG1036|consen   89 -QIGTHDEGIRCIEYSY-----EVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSGN-RLVVGTSDRKVLIY  160 (323)
T ss_pred             -eeccCCCceEEEEeec-----cCCeEEEcccCccEEEEecccccccccccc-CceEEEEeccCC-EEEEeecCceEEEE
Confidence             4788999999999997     567899999999999999998665555543 348888888755 89999999999999


Q ss_pred             ECCCCeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEE
Q 012799          267 ETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (456)
Q Consensus       267 d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  344 (456)
                      |+++........  .-.-.+.++++-|+                                    +.-+++++-||.|.+=
T Consensus       161 DLRn~~~~~q~reS~lkyqtR~v~~~pn------------------------------------~eGy~~sSieGRVavE  204 (323)
T KOG1036|consen  161 DLRNLDEPFQRRESSLKYQTRCVALVPN------------------------------------GEGYVVSSIEGRVAVE  204 (323)
T ss_pred             EcccccchhhhccccceeEEEEEEEecC------------------------------------CCceEEEeecceEEEE
Confidence            999865443222  23456788888885                                    3448899999998875


Q ss_pred             ecCCCC---CCcccccccc---------ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeee
Q 012799          345 EPAVSK---QPKTRMTGHQ---------QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL  412 (456)
Q Consensus       345 d~~~~~---~~~~~~~~~~---------~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~  412 (456)
                      .+....   .....++.|.         .+|++++|+|-...||||+.||.|.+||+.+.+.+..+......|.++    
T Consensus       205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sl----  280 (323)
T KOG1036|consen  205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSL----  280 (323)
T ss_pred             ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEE----
Confidence            544431   2233344443         379999999998899999999999999999999999998887889888    


Q ss_pred             eeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799          413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (456)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~  449 (456)
                                             +|+.||..||.|+.
T Consensus       281 -----------------------sfs~dG~~LAia~s  294 (323)
T KOG1036|consen  281 -----------------------SFSMDGSLLAIASS  294 (323)
T ss_pred             -----------------------EeccCCCeEEEEec
Confidence                                   88999999999874

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.3e-31  Score=233.31  Aligned_cols=243  Identities=30%  Similarity=0.507  Sum_probs=217.1

Q ss_pred             CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEec-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  184 (456)
                      -+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|+  +..+.+|+.|+.|..+|++..+.
T Consensus       215 ~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~  292 (484)
T KOG0305|consen  215 FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH  292 (484)
T ss_pred             cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence            3489999999999999999999999999999999999999988 99999999997  67899999999999999999887


Q ss_pred             ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEe--CC
Q 012799          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGS--QD  260 (456)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~--~d  260 (456)
                      ....+.+|...|..+.|++     ++.++++|+.|+.+.|||.....+...+..|.+.|.+++|+|-.  .|++|+  .|
T Consensus       293 ~~~~~~~H~qeVCgLkws~-----d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D  367 (484)
T KOG0305|consen  293 VVSTLQGHRQEVCGLKWSP-----DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD  367 (484)
T ss_pred             hhhhhhcccceeeeeEECC-----CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence            6656889999999999999     99999999999999999999889999999999999999999944  888764  59


Q ss_pred             CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE-EEeCCC
Q 012799          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDF  339 (456)
Q Consensus       261 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg  339 (456)
                      +.|++||..+++.+..+. ....|.++.|++.+.                                   +++. .|..++
T Consensus       368 ~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k-----------------------------------Ei~sthG~s~n  411 (484)
T KOG0305|consen  368 RCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYK-----------------------------------ELLSTHGYSEN  411 (484)
T ss_pred             cEEEEEEcCCCcEecccc-cCCceeeEEEcCCCC-----------------------------------EEEEecCCCCC
Confidence            999999999999988887 577899999999852                                   2222 345677


Q ss_pred             cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  392 (456)
                      .|.||+... ......+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus       412 ~i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  412 QITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             cEEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            899999766 4566778899999999999999999999999999999998764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=2.4e-31  Score=245.21  Aligned_cols=247  Identities=33%  Similarity=0.507  Sum_probs=219.0

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  180 (456)
                      ...|.||.+.|.++++..-+..|++|+.|.++++||..++++...+.+|...|.++..  .+.++++|+.|.+|++|+++
T Consensus       242 ~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~  319 (537)
T KOG0274|consen  242 LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVT  319 (537)
T ss_pred             EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEecc
Confidence            3449999999999999987889999999999999999999999999999999999997  45588889999999999999


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCC
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD  260 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d  260 (456)
                      ++..+. .+.+|..+|.++..       ++.++++|+.|++|++||+.+++++..+.+|...|.++.+.+...+++|+.|
T Consensus       320 n~~~l~-l~~~h~~~V~~v~~-------~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D  391 (537)
T KOG0274|consen  320 NGACLN-LLRGHTGPVNCVQL-------DEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLD  391 (537)
T ss_pred             CcceEE-EeccccccEEEEEe-------cCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeec
Confidence            998876 56669999999998       4589999999999999999999999999999999999999885699999999


Q ss_pred             CcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799          261 CTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (456)
Q Consensus       261 g~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  339 (456)
                      ++|++||+++. +++..+.+|..-+..+.+.                                      ++++++++.|+
T Consensus       392 ~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--------------------------------------~~~Lvs~~aD~  433 (537)
T KOG0274|consen  392 TTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--------------------------------------DNFLVSSSADG  433 (537)
T ss_pred             cceEeecCCchhhhhhhhcCCcccccccccc--------------------------------------cceeEeccccc
Confidence            99999999999 8999999998888666554                                      45699999999


Q ss_pred             cEEEEecCCCCCCcccccc-ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 012799          340 TMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (456)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  398 (456)
                      +|++||....+ ....+.+ |...|..+++.  ...+++++.||.+++||++++++...+
T Consensus       434 ~Ik~WD~~~~~-~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  434 TIKLWDAEEGE-CLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             cEEEeecccCc-eeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            99999966554 4555555 67889888886  457888999999999999999988766

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-29  Score=195.85  Aligned_cols=285  Identities=24%  Similarity=0.317  Sum_probs=229.4

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCC------C-----cc-e---eEEecCCCCEEEEEEcCCCCEEEEEeCC
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT------Q-----TP-M---FKCTGHKNWVLCIAWSADGKHLVSGSKA  171 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~------~-----~~-~---~~~~~~~~~v~~~~~~~~~~~l~s~~~d  171 (456)
                      .+..|.+++|+|.|.+.|.|+..++.+|.....      +     ++ .   +.-+.|.+.|+|.+|+|+|.+|++|+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            467899999999999999999999999885432      1     11 1   2234689999999999999999999999


Q ss_pred             CeEEEEeCCCCCCc----cccccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEEEecCcCccEEEE
Q 012799          172 GELQCWDPQTGKPS----GNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCV  246 (456)
Q Consensus       172 g~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~  246 (456)
                      .+|++.-.+.....    ...+.-|.+.|..++|.... ...+..|++++. |..|++-|...++....+.+|.+.|.++
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~-~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal  189 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDP-ESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL  189 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecCC-CcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence            99999866543221    11356689999999997532 225566776654 6788888999999999999999999876


Q ss_pred             EeCCCCeEEEEeCCCcEEEEECCCCeEEEEeec-------CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHh
Q 012799          247 KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG-------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (456)
Q Consensus       247 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (456)
                      ---..-++++|+.|.+|++||++-..++.++..       ..+.|.++++.|.                           
T Consensus       190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps---------------------------  242 (350)
T KOG0641|consen  190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS---------------------------  242 (350)
T ss_pred             EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC---------------------------
Confidence            432223999999999999999998888877642       2356888898887                           


Q ss_pred             hhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC----eEE
Q 012799          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG----KFV  395 (456)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~----~~~  395 (456)
                               +..+++|..|....+||++.+ .+++.+..|...|.++.|||...|+.+++.|..|++=|+...    -.+
T Consensus       243 ---------grll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~  312 (350)
T KOG0641|consen  243 ---------GRLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPI  312 (350)
T ss_pred             ---------cceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCce
Confidence                     566999999999999998765 467778899999999999999999999999999999998631    124


Q ss_pred             EEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       396 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .....|.+.+..+                           .|+|..-.+++.+.|.++.+|
T Consensus       313 ~vv~ehkdk~i~~---------------------------rwh~~d~sfisssadkt~tlw  346 (350)
T KOG0641|consen  313 MVVAEHKDKAIQC---------------------------RWHPQDFSFISSSADKTATLW  346 (350)
T ss_pred             EEEEeccCceEEE---------------------------EecCccceeeeccCcceEEEe
Confidence            4556788888777                           899999999999999999999

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=9e-30  Score=235.53  Aligned_cols=251  Identities=18%  Similarity=0.267  Sum_probs=191.9

Q ss_pred             EECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCc-------cccccCcccceE
Q 012799          126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPS-------GNPLSGHKKWIT  197 (456)
Q Consensus       126 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~v~  197 (456)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|+ +++|++|+.||+|++||+.++...       ...+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            567889999999888888889999999999999996 789999999999999999865321       113578999999


Q ss_pred             EEEecccccCCCCCE-EEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEE
Q 012799          198 GISWEPVHLNAPCRR-FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIR  275 (456)
Q Consensus       198 ~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~  275 (456)
                      +++|+|     ++.. +++++.|+.|++||+++++....+. |...|.+++|+++| .|++++.|+.|++||+++++.+.
T Consensus       130 sVaf~P-----~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~  203 (568)
T PTZ00420        130 IIDWNP-----MNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS  203 (568)
T ss_pred             EEEECC-----CCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence            999999     6655 5789999999999999998877775 56789999999999 88888899999999999999999


Q ss_pred             EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC----cEEEEecCCCCC
Q 012799          276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF----TMFLWEPAVSKQ  351 (456)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~  351 (456)
                      .+.+|.+.+....+....                               .++++.++++++.|+    .|++||++....
T Consensus       204 tl~gH~g~~~s~~v~~~~-------------------------------fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~  252 (568)
T PTZ00420        204 SFHIHDGGKNTKNIWIDG-------------------------------LGGDDNYILSTGFSKNNMREMKLWDLKNTTS  252 (568)
T ss_pred             EEecccCCceeEEEEeee-------------------------------EcCCCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence            998888765444332110                               001255688877664    799999986555


Q ss_pred             Cccccc--cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE--EEEecccccEEEEEeeeee
Q 012799          352 PKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV--AVFRGHVGPVYQIRFELIY  414 (456)
Q Consensus       352 ~~~~~~--~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~  414 (456)
                      ++....  .+.+.+......++|.++++|+.|+.|++|++..+...  ..+. +..+..+++|.+..
T Consensus       253 pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        253 ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence            554432  23333444444556889999999999999999877532  2222 45677777554433

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=5.9e-29  Score=213.34  Aligned_cols=368  Identities=20%  Similarity=0.270  Sum_probs=267.3

Q ss_pred             HHHHhhcCCCCCceeEEecCeeeeechhhhHhhcCcCcccEEEEEEeccceEEEe-ecccccccccCCcccEEEEEECCC
Q 012799           41 IVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIR-PVNRCSATIAGHTEAVLSVAFSPD  119 (456)
Q Consensus        41 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~h~~~V~~~~~s~~  119 (456)
                      +-..+.....++.+.+.+++..++.++.-.         +..++.|.-..+..+. -..+..+.+.||++.|.|++.+||
T Consensus        45 ~d~~~P~~kl~LewvygYRG~dcR~Nly~l---------ptgE~vyfvA~V~Vl~n~ee~~Qr~y~GH~ddikc~~vHPd  115 (626)
T KOG2106|consen   45 ADVELPTEKLKLEWVYGYRGVDCRNNLYLL---------PTGELVYFVAAVGVLYNWEERSQRHYLGHNDDIKCMAVHPD  115 (626)
T ss_pred             hhccCcccCceeEEEEeecceeeeceeEEc---------cCccEEEEeccEEEEEeehhhhcccccCCCCceEEEeecCC
Confidence            334555666778899999999998877432         2223333333322222 233456778899999999999999


Q ss_pred             CCeEEEEECCC--------cEEEEeCCCCcceeEEecCCCCEEEEEEcC--CCCEEEEE--eCCCeEEEEeCCCCCCccc
Q 012799          120 GRQLASGSGDT--------TVRLWDLNTQTPMFKCTGHKNWVLCIAWSA--DGKHLVSG--SKAGELQCWDPQTGKPSGN  187 (456)
Q Consensus       120 ~~~l~~~~~d~--------~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~--~~dg~i~vwd~~~~~~~~~  187 (456)
                      .-.+++|-..|        .+++||..+-..+..+......|.|++|++  .|.+++..  +.+..+.+||++.+.... 
T Consensus       116 ri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~-  194 (626)
T KOG2106|consen  116 RIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG-  194 (626)
T ss_pred             ceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccC-
Confidence            98888775444        599999888887888878888999999998  45566654  345679999999877665 


Q ss_pred             cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cC-cCccEEEEEeCCCCeEEEEeCCCcE
Q 012799          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SG-HTLAVTCVKWGGDGVIYTGSQDCTI  263 (456)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~-~~~~v~~~~~~~~~~l~~~~~dg~i  263 (456)
                      .....+..|....|+|.    +.+.+++.+ .|.+.+|+.+.+......   +. ....|.|++|.++|-+++|..+|.|
T Consensus       195 ~vk~sne~v~~a~FHPt----d~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i  269 (626)
T KOG2106|consen  195 PVKTSNEVVFLATFHPT----DPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNI  269 (626)
T ss_pred             cceeccceEEEEEeccC----CCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceE
Confidence            34556677899999994    334555555 489999999887665443   22 2467999999999999999999999


Q ss_pred             EEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH-----HHh-------------------
Q 012799          264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA-----ALE-------------------  319 (456)
Q Consensus       264 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-------------------  319 (456)
                      .||+..+.+..+....|.+.|.+++.-.++.+.++..|.....|.......+.     ...                   
T Consensus       270 ~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN  349 (626)
T KOG2106|consen  270 LIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRN  349 (626)
T ss_pred             EEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccc
Confidence            99999988888887799999999999999998887766655444421111000     000                   


Q ss_pred             ---------------------hhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE
Q 012799          320 ---------------------RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA  378 (456)
Q Consensus       320 ---------------------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  378 (456)
                                           .+.....++.+.+++++.|+.+++|+  ..+....+  .-..++.++.|+|.| .+|.|
T Consensus       350 ~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~--~~~d~~~~~~fhpsg-~va~G  424 (626)
T KOG2106|consen  350 FILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK--IIEDPAECADFHPSG-VVAVG  424 (626)
T ss_pred             eEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE--EecCceeEeeccCcc-eEEEe
Confidence                                 00011345566788888888888888  22222222  234567888888888 88888


Q ss_pred             ECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       379 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ...|...+.|.++..++..-.. ..+++.+                           +|+|+|.+||.|+.|+.|+|.
T Consensus       425 t~~G~w~V~d~e~~~lv~~~~d-~~~ls~v---------------------------~ysp~G~~lAvgs~d~~iyiy  474 (626)
T KOG2106|consen  425 TATGRWFVLDTETQDLVTIHTD-NEQLSVV---------------------------RYSPDGAFLAVGSHDNHIYIY  474 (626)
T ss_pred             eccceEEEEecccceeEEEEec-CCceEEE---------------------------EEcCCCCEEEEecCCCeEEEE
Confidence            8888888888888666665554 7788888                           889999999999999999873

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.98  E-value=1.3e-29  Score=229.77  Aligned_cols=300  Identities=19%  Similarity=0.315  Sum_probs=240.0

Q ss_pred             eEEEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCE-EEE
Q 012799           91 VFRIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVS  167 (456)
Q Consensus        91 ~~~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s  167 (456)
                      .+.+|.  .++.+.+++++...|+++.-+|--..+|.|..+|+|.++++..++.+.+++...+.|+.++|.-||+. +++
T Consensus       183 ~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las  262 (910)
T KOG1539|consen  183 RLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLAS  262 (910)
T ss_pred             cEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEe
Confidence            334443  45688999999999999999999999999999999999999999999999855699999999999875 556


Q ss_pred             EeCCCeEEEEeCCCCCCcccccc----------------------------------------------CcccceEEEEe
Q 012799          168 GSKAGELQCWDPQTGKPSGNPLS----------------------------------------------GHKKWITGISW  201 (456)
Q Consensus       168 ~~~dg~i~vwd~~~~~~~~~~~~----------------------------------------------~~~~~v~~~~~  201 (456)
                      |+..|.+.+||++..+.......                                              +|..+..++.|
T Consensus       263 ~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irf  342 (910)
T KOG1539|consen  263 GRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRF  342 (910)
T ss_pred             ccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheee
Confidence            66679999999986553222222                                              22222222322


Q ss_pred             cc------------------------------------------------------------------------------
Q 012799          202 EP------------------------------------------------------------------------------  203 (456)
Q Consensus       202 ~~------------------------------------------------------------------------------  203 (456)
                      .-                                                                              
T Consensus       343 y~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~  422 (910)
T KOG1539|consen  343 YGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKR  422 (910)
T ss_pred             eccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence            21                                                                              


Q ss_pred             -------------------------------cccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCccEEEEEeC
Q 012799          204 -------------------------------VHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCVKWG  249 (456)
Q Consensus       204 -------------------------------~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~  249 (456)
                                                     ...+..|++.+.|...|.|-+|++.+|-....+   ..|..+|+.++.+
T Consensus       423 ~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D  502 (910)
T KOG1539|consen  423 SAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD  502 (910)
T ss_pred             eEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEec
Confidence                                           112235666777777888888888888777777   4799999999999


Q ss_pred             CCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799          250 GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (456)
Q Consensus       250 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (456)
                      .-+ .+++++.+|.+.+||......+..+. -...+..+..+..                                    
T Consensus       503 ~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~------------------------------------  545 (910)
T KOG1539|consen  503 GTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRV------------------------------------  545 (910)
T ss_pred             CCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeeh------------------------------------
Confidence            877 89999999999999999888777766 3445666666554                                    


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      ...++.+..|-.|+++|..+ ...++.+.+|.+.|++++|||||++|++++.|++|++||+.++.++..+. -..+..++
T Consensus       546 s~l~a~~~ddf~I~vvD~~t-~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sl  623 (910)
T KOG1539|consen  546 SDLLAIALDDFSIRVVDVVT-RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSL  623 (910)
T ss_pred             hhhhhhhcCceeEEEEEchh-hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceee
Confidence            34588999999999999654 45677789999999999999999999999999999999999999998776 45677778


Q ss_pred             EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCC-CceEEC
Q 012799          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-STLKVT  456 (456)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D-g~v~iW  456 (456)
                                                 .|||+|.+|||...| .-|++|
T Consensus       624 ---------------------------s~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  624 ---------------------------SFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             ---------------------------EECCCCCEEEEEEecCceEEEE
Confidence                                       889999999999998 678988

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3e-29  Score=202.97  Aligned_cols=262  Identities=19%  Similarity=0.268  Sum_probs=208.9

Q ss_pred             EEEEECCCcEEEEeCCC------------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 012799          123 LASGSGDTTVRLWDLNT------------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS  190 (456)
Q Consensus       123 l~~~~~d~~v~vwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  190 (456)
                      |++|++...|.=+++..            -.+++.+..|.+++++++.  ++.++|+|+.|-+|+|||+++..... .+.
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg-~ll   80 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG-ILL   80 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc-cee
Confidence            55666665555555432            1235667789999999998  68899999999999999999888776 677


Q ss_pred             CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECC
Q 012799          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT  269 (456)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~  269 (456)
                      .|.+.|+++.|.+..   ..+.|++|+.||.|.+|+.....++..+++|.+.|+.++.+|.+ .-++.+.|+.+++||+-
T Consensus        81 ~HagsitaL~F~~~~---S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV  157 (362)
T KOG0294|consen   81 SHAGSITALKFYPPL---SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV  157 (362)
T ss_pred             ccccceEEEEecCCc---chhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence            899999999999833   23489999999999999999999999999999999999999999 77788999999999999


Q ss_pred             CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC
Q 012799          270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS  349 (456)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  349 (456)
                      +|+.-...... .....+.|+|.                                    +++++.+..+ .|-+|.+...
T Consensus       158 ~Gr~a~v~~L~-~~at~v~w~~~------------------------------------Gd~F~v~~~~-~i~i~q~d~A  199 (362)
T KOG0294|consen  158 RGRVAFVLNLK-NKATLVSWSPQ------------------------------------GDHFVVSGRN-KIDIYQLDNA  199 (362)
T ss_pred             cCccceeeccC-CcceeeEEcCC------------------------------------CCEEEEEecc-EEEEEecccH
Confidence            88765554422 22344888877                                    6666666654 5788876554


Q ss_pred             CCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeeccc
Q 012799          350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS  429 (456)
Q Consensus       350 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~  429 (456)
                      ......  .....+.++.|- ++..|++|+.|+.|.+||..++.++..+.+|...|-++.+                   
T Consensus       200 ~v~~~i--~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~-------------------  257 (362)
T KOG0294|consen  200 SVFREI--ENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS-------------------  257 (362)
T ss_pred             hHhhhh--hccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEE-------------------
Confidence            322221  122446677665 5678999999999999999999999999999999999943                   


Q ss_pred             ccccceeEecCCCeEEEeeCCCceEEC
Q 012799          430 CCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       430 ~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                            --.|++.+|+|+|.||.|+||
T Consensus       258 ------~~~~~~~~lvTaSSDG~I~vW  278 (362)
T KOG0294|consen  258 ------YTNPEHEYLVTASSDGFIKVW  278 (362)
T ss_pred             ------EecCCceEEEEeccCceEEEE
Confidence                  336788999999999999999

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=5.5e-30  Score=201.83  Aligned_cols=242  Identities=24%  Similarity=0.399  Sum_probs=207.0

Q ss_pred             eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (456)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i  222 (456)
                      ..+.+|...+.+++|+.+|..|++|+.|+++.+|+++..+... ....+|.+.|..++|+|.    ....|++++.|.+|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~----~~d~~atas~dk~i   89 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK----HPDLFATASGDKTI   89 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC----CCcceEEecCCceE
Confidence            4456899999999999999999999999999999998775432 246789999999999985    44689999999999


Q ss_pred             EEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecccc
Q 012799          223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (456)
Q Consensus       223 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  301 (456)
                      ++||++++++..........+ -+.|+|+| +++++..|..|.+.|.++.+.....+ ....+..++|+.+         
T Consensus        90 r~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~---------  158 (313)
T KOG1407|consen   90 RIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNS---------  158 (313)
T ss_pred             EEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCC---------
Confidence            999999999998887555554 47888888 99999999999999999987776655 3445677777754         


Q ss_pred             CCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC
Q 012799          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD  381 (456)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d  381 (456)
                                                 ++.++.....|+|.|.... .-+++..+..|.....|+.|+|+|+++|+|+.|
T Consensus       159 ---------------------------nd~Fflt~GlG~v~ILsyp-sLkpv~si~AH~snCicI~f~p~GryfA~GsAD  210 (313)
T KOG1407|consen  159 ---------------------------NDLFFLTNGLGCVEILSYP-SLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD  210 (313)
T ss_pred             ---------------------------CCEEEEecCCceEEEEecc-ccccccccccCCcceEEEEECCCCceEeecccc
Confidence                                       4557777777999998865 456778899999999999999999999999999


Q ss_pred             CcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       382 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                      ..+.+||+...-+++.+..+.-+|..+                           +||.||++||+||+|-.|-|
T Consensus       211 AlvSLWD~~ELiC~R~isRldwpVRTl---------------------------SFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  211 ALVSLWDVDELICERCISRLDWPVRTL---------------------------SFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             ceeeccChhHhhhheeeccccCceEEE---------------------------EeccCcceeeccCccceEEe
Confidence            999999999999999999999999999                           88999999999999988754

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=2e-29  Score=232.33  Aligned_cols=227  Identities=20%  Similarity=0.285  Sum_probs=180.7

Q ss_pred             cccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCC-------cceeEEecCCCCEEEEEEcCCC-CEEEEEeCCCe
Q 012799          103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGE  173 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~  173 (456)
                      .+.||.+.|++++|+| ++++||+|+.|++|++||+.++       .++..+.+|...|.+++|+|++ ++|++++.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4789999999999999 8899999999999999999764       3567788999999999999975 79999999999


Q ss_pred             EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc-EEEEEeCCCC
Q 012799          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA-VTCVKWGGDG  252 (456)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~  252 (456)
                      |++||+++++... .+.+|...|.+++|+|     ++..|++++.|+.|++||+++++.+..+.+|... ...+.|.+++
T Consensus       150 VrIWDl~tg~~~~-~l~~h~~~V~sla~sp-----dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~  223 (493)
T PTZ00421        150 VNVWDVERGKAVE-VIKCHSDQITSLEWNL-----DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRK  223 (493)
T ss_pred             EEEEECCCCeEEE-EEcCCCCceEEEEEEC-----CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCC
Confidence            9999999887654 5678999999999999     8999999999999999999999999888888764 4567788876


Q ss_pred             -eEEEEe----CCCcEEEEECCCCe-EEEEeecCC-cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhcc
Q 012799          253 -VIYTGS----QDCTIKVWETTQGK-LIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (456)
Q Consensus       253 -~l~~~~----~dg~i~iwd~~~~~-~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (456)
                       .+++++    .|+.|++||+++.. ++.....+. ..+....++++                                 
T Consensus       224 ~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d---------------------------------  270 (493)
T PTZ00421        224 DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDED---------------------------------  270 (493)
T ss_pred             CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCC---------------------------------
Confidence             666544    47899999998754 333333222 33444456665                                 


Q ss_pred             CCCCCEEEEEe-CCCcEEEEecCCCCCCccccccccccEeEEEECCC
Q 012799          326 GNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD  371 (456)
Q Consensus       326 ~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~  371 (456)
                         +..+++++ .|+.|++||+............+..++..++|.|.
T Consensus       271 ---~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        271 ---TNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             ---CCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence               45577766 59999999988765333322345566788888884

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.2e-28  Score=199.94  Aligned_cols=245  Identities=20%  Similarity=0.271  Sum_probs=202.3

Q ss_pred             cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC--
Q 012799          141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK--  218 (456)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~--  218 (456)
                      ++.+.+......|.++.|+++|.++++++.|..+++||..+++.+. .+..++-.+..++|..     ....++.++.  
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~-ti~skkyG~~~~~Fth-----~~~~~i~sStk~   78 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK-TINSKKYGVDLACFTH-----HSNTVIHSSTKE   78 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee-EeecccccccEEEEec-----CCceEEEccCCC
Confidence            3445555667889999999999999999999999999999998876 4555666677788866     4456666666  


Q ss_pred             CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeee
Q 012799          219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT  297 (456)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  297 (456)
                      |.+|+..++.+.+.++.+.+|...|..++.+|-+ .+++++.|++|++||++..++...+.....+  ..++.|.     
T Consensus        79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~-----  151 (311)
T KOG1446|consen   79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPE-----  151 (311)
T ss_pred             CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCC-----
Confidence            8899999999999999999999999999999977 9999999999999999988777666544443  3567776     


Q ss_pred             ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC-CCCccccc---cccccEeEEEECCCCC
Q 012799          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-KQPKTRMT---GHQQLVNHVYFSPDGQ  373 (456)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~---~~~~~v~~~~~sp~~~  373 (456)
                                                     |-.+|++.....|++||++.- +.+...+.   +.....+.+.|||||+
T Consensus       152 -------------------------------GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK  200 (311)
T KOG1446|consen  152 -------------------------------GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK  200 (311)
T ss_pred             -------------------------------CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC
Confidence                                           445888888889999998865 33333332   3456789999999999


Q ss_pred             EEEEEECCCcEEEEeCCCCeEEEEEecccccE---EEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCC
Q 012799          374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPV---YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD  450 (456)
Q Consensus       374 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D  450 (456)
                      +|+.++..+.+++.|.-+|..+..+.++...-   .+.                           +|+||++++++|+.|
T Consensus       201 ~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a---------------------------~ftPds~Fvl~gs~d  253 (311)
T KOG1446|consen  201 SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA---------------------------TFTPDSKFVLSGSDD  253 (311)
T ss_pred             EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE---------------------------EECCCCcEEEEecCC
Confidence            99999999999999999999999988776533   222                           789999999999999


Q ss_pred             CceEEC
Q 012799          451 STLKVT  456 (456)
Q Consensus       451 g~v~iW  456 (456)
                      |+|.+|
T Consensus       254 g~i~vw  259 (311)
T KOG1446|consen  254 GTIHVW  259 (311)
T ss_pred             CcEEEE
Confidence            999999

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.7e-29  Score=202.42  Aligned_cols=258  Identities=21%  Similarity=0.343  Sum_probs=209.3

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEe
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAGELQCWD  178 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd  178 (456)
                      ...+..|.++|++++.+  +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-.  .|++|+.||.|.+|+
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            44667899999999995  89999999999999999999999999999999999999998664  899999999999999


Q ss_pred             CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE
Q 012799          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~  257 (456)
                      ......+. .+.+|.+.|+.++.+|     .++..++.+.|+.++.||+-+++.-..++- ...-+.+.|+|.| +++.+
T Consensus       114 ~~~W~~~~-slK~H~~~Vt~lsiHP-----S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~  186 (362)
T KOG0294|consen  114 VGSWELLK-SLKAHKGQVTDLSIHP-----SGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVS  186 (362)
T ss_pred             cCCeEEee-eecccccccceeEecC-----CCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEE
Confidence            98886655 7899999999999999     889999999999999999988776554432 2233449999999 77777


Q ss_pred             eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (456)
                      ..+ .|-+|.+.+......+... ..+.++.|.                                     ++..+++|.+
T Consensus       187 ~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-------------------------------------~~~~L~vG~d  227 (362)
T KOG0294|consen  187 GRN-KIDIYQLDNASVFREIENP-KRILCATFL-------------------------------------DGSELLVGGD  227 (362)
T ss_pred             ecc-EEEEEecccHhHhhhhhcc-ccceeeeec-------------------------------------CCceEEEecC
Confidence            765 4889998887666555433 334444433                                     2566999999


Q ss_pred             CCcEEEEecCCCCCCccccccccccEeEEEE--CCCCCEEEEEECCCcEEEEeCCCC-----eEEEEEecccccEEEE
Q 012799          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF--SPDGQWVASASFDKSIKLWNGTTG-----KFVAVFRGHVGPVYQI  408 (456)
Q Consensus       338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~i  408 (456)
                      |+.|.+||... ..+...+.+|...|.++.+  .|++.+|++++.||.|++||+...     +++..+.. ...++|+
T Consensus       228 ~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl  303 (362)
T KOG0294|consen  228 NEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCL  303 (362)
T ss_pred             CceEEEeccCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCcccee
Confidence            99999999554 6677788999999999984  567889999999999999998865     45555543 3455555

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=5.7e-30  Score=217.14  Aligned_cols=247  Identities=23%  Similarity=0.437  Sum_probs=208.9

Q ss_pred             cCCcccEEEEEECCCC-CeEEEEECCCcEEEEeCCCC----------cceeEEecCCCCEEEEEEcCC-CCEEEEEeCCC
Q 012799          105 AGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ----------TPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAG  172 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg  172 (456)
                      --|.+.|+.+.+-|+. ..+|+++..+.|.|||..+.          .+-.++.+|.+.-+.++|++. .-.|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            4599999999999965 56777888999999998653          223478899998899999984 45899999999


Q ss_pred             eEEEEeCCCCCC------ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC--CCeEEEEecCcCccEE
Q 012799          173 ELQCWDPQTGKP------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS--LRKCVICLSGHTLAVT  244 (456)
Q Consensus       173 ~i~vwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~  244 (456)
                      .|++||+.....      ....+.+|...|..++|++.    ....|++++.|+.+.|||++  +.++.....+|.++|.
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~----h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn  276 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL----HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN  276 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhcccc----chhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence            999999986543      22357889999999999996    45689999999999999999  5666777789999999


Q ss_pred             EEEeCCCC--eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799          245 CVKWGGDG--VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (456)
Q Consensus       245 ~~~~~~~~--~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (456)
                      |++|+|-+  .|++|+.|++|.+||+|+. +++.++.+|...|..+.|+|..                            
T Consensus       277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~----------------------------  328 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN----------------------------  328 (422)
T ss_pred             EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC----------------------------
Confidence            99999966  8999999999999999974 5788899999999999999984                            


Q ss_pred             hhccCCCCCEEEEEeCCCcEEEEecCCCCC-------------CccccccccccEeEEEECCCCCE-EEEEECCCcEEEE
Q 012799          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-------------PKTRMTGHQQLVNHVYFSPDGQW-VASASFDKSIKLW  387 (456)
Q Consensus       322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iw  387 (456)
                             ...|++++.|+.+.+||+..-..             ++....||...|..+.|+|+..+ |++.+.|+.+.||
T Consensus       329 -------etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW  401 (422)
T KOG0264|consen  329 -------ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIW  401 (422)
T ss_pred             -------CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEe
Confidence                   45699999999999999865432             23455789999999999998776 8889999999999


Q ss_pred             eCC
Q 012799          388 NGT  390 (456)
Q Consensus       388 d~~  390 (456)
                      ...
T Consensus       402 ~~s  404 (422)
T KOG0264|consen  402 QMA  404 (422)
T ss_pred             ecc
Confidence            975

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=7.3e-29  Score=201.00  Aligned_cols=284  Identities=24%  Similarity=0.336  Sum_probs=211.0

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce--eE--EecCCCCEEEEEEcCCCCEEEEE-eCCCeEE
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FK--CTGHKNWVLCIAWSADGKHLVSG-SKAGELQ  175 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~--~~--~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~  175 (456)
                      ...|+||.+.|++++|+.||+.||+++.|++|++|+++.....  +.  ..-.-+..+.+.|.||-+-++.. -...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            5679999999999999999999999999999999998763211  00  11122357889999997765554 4456799


Q ss_pred             EEeCCCCCC---cc--------ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEE
Q 012799          176 CWDPQTGKP---SG--------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT  244 (456)
Q Consensus       176 vwd~~~~~~---~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  244 (456)
                      +|.+...+.   ..        .+...|.-.+..+-.-.     ++.++++++.|..|.+|+++ |+.+..+......-.
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-----~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~  232 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-----NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY  232 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecC-----CceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence            997753321   11        01223444444443333     77899999999999999998 888888877777778


Q ss_pred             EEEeCCCC-eEEEEeCCCcEEEEECCC---C-----eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHH
Q 012799          245 CVKWGGDG-VIYTGSQDCTIKVWETTQ---G-----KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (456)
Q Consensus       245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~---~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (456)
                      ..+.+|+| .+++++.--.|++|..--   |     ..+..+.+|...|..++|+++                       
T Consensus       233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~-----------------------  289 (420)
T KOG2096|consen  233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS-----------------------  289 (420)
T ss_pred             ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC-----------------------
Confidence            88999999 777777888899998632   2     235577899999999999998                       


Q ss_pred             HHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC----CCCcc------ccccccccEeEEEECCCCCEEEEEECCCcEE
Q 012799          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS----KQPKT------RMTGHQQLVNHVYFSPDGQWVASASFDKSIK  385 (456)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~------~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~  385 (456)
                                   ..++++.+.||++++||..-.    +.+..      .+....+....+.++|+|+.||.+. ...++
T Consensus       290 -------------S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~  355 (420)
T KOG2096|consen  290 -------------STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLK  355 (420)
T ss_pred             -------------cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceE
Confidence                         667999999999999996432    11111      1111223344899999999888764 55799


Q ss_pred             EEeCCCCeEEEEEe-cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          386 LWNGTTGKFVAVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       386 iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                      +|..++|+....++ .|...|.++                           +|+++|++++|+|+ ..+++
T Consensus       356 ~~~se~g~~~~~~e~~h~~~Is~i---------------------------s~~~~g~~~atcGd-r~vrv  398 (420)
T KOG2096|consen  356 VFASEDGKDYPELEDIHSTTISSI---------------------------SYSSDGKYIATCGD-RYVRV  398 (420)
T ss_pred             EEEcccCccchhHHHhhcCceeeE---------------------------EecCCCcEEeeecc-eeeee
Confidence            99999988776665 688899999                           99999999999984 44443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=2.6e-29  Score=211.60  Aligned_cols=256  Identities=23%  Similarity=0.354  Sum_probs=222.1

Q ss_pred             EEeecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q 012799           93 RIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG  172 (456)
Q Consensus        93 ~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  172 (456)
                      .-.+.++...+|+||...|+.+.|+|+...+++++.|..|+||.............|..+|+.+..+|.|.||++++.||
T Consensus       246 ~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~  325 (506)
T KOG0289|consen  246 FDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDG  325 (506)
T ss_pred             EecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCc
Confidence            34567788899999999999999999999999999999999999988888888889999999999999999999999999


Q ss_pred             eEEEEeCCCCCCcccccc-CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC
Q 012799          173 ELQCWDPQTGKPSGNPLS-GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD  251 (456)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  251 (456)
                      +..+.|++++........ ...-.+++.+|+|     ||..|.+|..||.+++||+.++..+..|.+|.++|..++|+.+
T Consensus       326 ~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-----DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsEN  400 (506)
T KOG0289|consen  326 TWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-----DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSEN  400 (506)
T ss_pred             eEEEEEccCCcEEEEEeeccccceeEEeeEcC-----CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccC
Confidence            999999999987643222 1234589999999     9999999999999999999999999999999999999999999


Q ss_pred             C-eEEEEeCCCcEEEEECCCCeEEEEeecC-CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799          252 G-VIYTGSQDCTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (456)
Q Consensus       252 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (456)
                      | ++++++.|+.|++||+|..+..+++... ...+.++.|.+.                                    +
T Consensus       401 GY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S------------------------------------G  444 (506)
T KOG0289|consen  401 GYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS------------------------------------G  444 (506)
T ss_pred             ceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCC------------------------------------C
Confidence            9 9999999999999999998888877643 336888888887                                    6


Q ss_pred             CEEEEEeCCCcEEEEecCC-CCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799          330 ERLVSGSDDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (456)
Q Consensus       330 ~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  389 (456)
                      .+++.++.|=.|++++-.+ .......+..|.+..+++.|..+.+++++++.|..++++.+
T Consensus       445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             CeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            6799998887888877332 22344556678888999999999999999999999888764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=5e-29  Score=197.07  Aligned_cols=234  Identities=19%  Similarity=0.284  Sum_probs=207.4

Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (456)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i  224 (456)
                      .+++|+.+++.+.++.+|.+|++++.|.+..+|-..+|+.+. .+.+|.+.|+++....     +.+++++|+.|.++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG-ty~GHtGavW~~Did~-----~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG-TYDGHTGAVWCCDIDW-----DSKHLITGSADQTAKL   78 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee-eecCCCceEEEEEecC-----CcceeeeccccceeEE
Confidence            467899999999999999999999999999999998898887 7899999999999877     7799999999999999


Q ss_pred             EECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCC------CcEEEEECC-------CCeEEEEeecCCcceEEEEecC
Q 012799          225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD------CTIKVWETT-------QGKLIRELKGHGHWVNSLALST  291 (456)
Q Consensus       225 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~~~  291 (456)
                      ||+++|+++..++ ...+|..+.|+.+|.++..+.|      +.|.++|++       ..++...+..+.+.++...|.|
T Consensus        79 WDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~  157 (327)
T KOG0643|consen   79 WDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP  157 (327)
T ss_pred             EEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence            9999999999886 5788999999999944444433      579999998       4456777777888888888888


Q ss_pred             cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCC
Q 012799          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD  371 (456)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~  371 (456)
                      -                                    +++|++|.+||.|.+||++++...+.....|...|+.++++||
T Consensus       158 l------------------------------------~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d  201 (327)
T KOG0643|consen  158 L------------------------------------GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD  201 (327)
T ss_pred             c------------------------------------CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC
Confidence            6                                    6779999999999999999988888888889999999999999


Q ss_pred             CCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799          372 GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (456)
Q Consensus       372 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~  449 (456)
                      ..++++++.|.+.++||..+.+.+.++. -..||++.                           +++|....++.||.
T Consensus       202 ~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~a---------------------------aisP~~d~VilgGG  251 (327)
T KOG0643|consen  202 RTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTA---------------------------AISPLLDHVILGGG  251 (327)
T ss_pred             cceEEecccCccceeeeccceeeEEEee-ecccccce---------------------------ecccccceEEecCC
Confidence            9999999999999999999999999887 46788888                           88998887777764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.3e-30  Score=198.62  Aligned_cols=252  Identities=25%  Similarity=0.441  Sum_probs=209.1

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC---cceeEEecCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 012799          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWD  178 (456)
Q Consensus       104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd  178 (456)
                      -.+|.+.|..+...--|+.|||++.|++|+|+..++.   +.+.++.+|.++|..++|..  .|.+||+++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            3579999999999999999999999999999998765   45788999999999999985  799999999999999999


Q ss_pred             CCCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC---eEEEEecCcCccEEEEEeCCC---
Q 012799          179 PQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHTLAVTCVKWGGD---  251 (456)
Q Consensus       179 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~---  251 (456)
                      -++++-.. .....|...|++++|.|..   .|-.|++++.||.|.+.+.+..   ........|.-.|++++|.|.   
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~waphe---ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHE---YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccc---cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            88875322 2356789999999999965   6679999999999999998754   223345679999999999875   


Q ss_pred             C------------eEEEEeCCCcEEEEECCCCe--EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799          252 G------------VIYTGSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (456)
Q Consensus       252 ~------------~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (456)
                      |            +|++|+.|..|+||+..+++  .-+.+.+|.+.|+.++|.|...+                      
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl----------------------  221 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL----------------------  221 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC----------------------
Confidence            1            49999999999999998763  33458899999999999998432                      


Q ss_pred             HhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC--ccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP--KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                                ...+++++++||++.||..+....+  ...+......+..+.||+.|+.|+.++.|+.|.+|.-.
T Consensus       222 ----------~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  222 ----------PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ----------CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence                      3456999999999999986643322  22334456789999999999999999999999999744

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.1e-29  Score=213.76  Aligned_cols=244  Identities=23%  Similarity=0.375  Sum_probs=206.6

Q ss_pred             ecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCcc---------ccccCcccceEEEEecccccCCCCCEEEEE
Q 012799          147 TGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSG---------NPLSGHKKWITGISWEPVHLNAPCRRFVSA  216 (456)
Q Consensus       147 ~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~  216 (456)
                      ..|.+.|+.+..-|+ ...+++.+..+.|.|||..+-....         ..+.+|.+.-++++|++.    ....++++
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~----~~g~Lls~  196 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ----QEGTLLSG  196 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc----cceeEeec
Confidence            359999999999995 4567777888999999986533211         157789988889999985    44589999


Q ss_pred             eCCCcEEEEECCCCe-------EEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECC--CCeEEEEeecCCcceE
Q 012799          217 SKDGDARIWDVSLRK-------CVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETT--QGKLIRELKGHGHWVN  285 (456)
Q Consensus       217 ~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~  285 (456)
                      +.|+.|.+||+....       +...+.+|...|..++|++-.  .|.+++.|+.+.|||+|  +.++.....+|...+.
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn  276 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN  276 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence            999999999996432       355678999999999999865  89999999999999999  5667777888999999


Q ss_pred             EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeE
Q 012799          286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH  365 (456)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  365 (456)
                      +++|+|-.                                   +..|++|+.|++|.+||+|+-..+...+.+|...|.+
T Consensus       277 ~~~fnp~~-----------------------------------~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~  321 (422)
T KOG0264|consen  277 CVAFNPFN-----------------------------------EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQ  321 (422)
T ss_pred             EEEeCCCC-----------------------------------CceEEeccCCCcEEEeechhcccCceeccCCCcceEE
Confidence            99999973                                   5569999999999999999999999999999999999


Q ss_pred             EEECCC-CCEEEEEECCCcEEEEeCCC--------------CeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccc
Q 012799          366 VYFSPD-GQWVASASFDKSIKLWNGTT--------------GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSC  430 (456)
Q Consensus       366 ~~~sp~-~~~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~  430 (456)
                      +.|||+ ...||+++.|+.+.+||+..              .+++....||...|..+                      
T Consensus       322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df----------------------  379 (422)
T KOG0264|consen  322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF----------------------  379 (422)
T ss_pred             EEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccc----------------------
Confidence            999995 56799999999999999864              13457778999999888                      


Q ss_pred             cccceeEecCCC-eEEEeeCCCceEEC
Q 012799          431 CMSLYSWSADSR-LLLSGSKDSTLKVT  456 (456)
Q Consensus       431 ~~~~~~~s~dg~-~l~s~s~Dg~v~iW  456 (456)
                           .|+|+.. .++|+++|+.+.||
T Consensus       380 -----sWnp~ePW~I~SvaeDN~LqIW  401 (422)
T KOG0264|consen  380 -----SWNPNEPWTIASVAEDNILQIW  401 (422)
T ss_pred             -----cCCCCCCeEEEEecCCceEEEe
Confidence                 9999886 56788999999999

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=3.1e-29  Score=219.40  Aligned_cols=288  Identities=23%  Similarity=0.377  Sum_probs=235.8

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCC--EEEEEeCCCeEE
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAGELQ  175 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~  175 (456)
                      ..|...++||++.|.+|...|.|.+||+|+.||+|+||.+.++.++.++. ..+.|.|++|+|.+.  .||++ ....+.
T Consensus       390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~~  467 (733)
T KOG0650|consen  390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECVL  467 (733)
T ss_pred             ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCceE
Confidence            34667789999999999999999999999999999999999999999887 566899999999654  34433 333344


Q ss_pred             EEeCCCCC---------------------------------Cc---cccccCcccceEEEEecccccCCCCCEEEEEeCC
Q 012799          176 CWDPQTGK---------------------------------PS---GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD  219 (456)
Q Consensus       176 vwd~~~~~---------------------------------~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d  219 (456)
                      |-+..-|.                                 ..   ......|...|..+.|+.     .|.+|++...+
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-----kGDYlatV~~~  542 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-----KGDYLATVMPD  542 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-----CCceEEEeccC
Confidence            44432221                                 00   012335778889999998     99999987654


Q ss_pred             ---CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCccee
Q 012799          220 ---GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (456)
Q Consensus       220 ---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  295 (456)
                         ..|.|.++...+...-+....+.|.++.|+|.. .|++++. ..|++||+..+..++.+......|.+++++|.   
T Consensus       543 ~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~---  618 (733)
T KOG0650|consen  543 SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPN---  618 (733)
T ss_pred             CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCC---
Confidence               478999998777666676678889999999988 7776665 67999999998888888878888999999997   


Q ss_pred             eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEE
Q 012799          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV  375 (456)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  375 (456)
                                                       |+.|+.|+.|+.+..||+.....+.+.+..|...+++++|++.-.++
T Consensus       619 ---------------------------------GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLf  665 (733)
T KOG0650|consen  619 ---------------------------------GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLF  665 (733)
T ss_pred             ---------------------------------CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccccee
Confidence                                             66799999999999999999999999999999999999999999999


Q ss_pred             EEEECCCcEEEEeCC------CC---eEEEEEeccccc----EEEEEeeeeeeecCCCCceeeecccccccceeEecCCC
Q 012799          376 ASASFDKSIKLWNGT------TG---KFVAVFRGHVGP----VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR  442 (456)
Q Consensus       376 ~s~~~dg~i~iwd~~------~~---~~~~~~~~~~~~----v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  442 (456)
                      ++|+.||++.|+.-.      ..   -++..+++|...    |.+.                           .|+|...
T Consensus       666 as~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~---------------------------~wHP~qp  718 (733)
T KOG0650|consen  666 ASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT---------------------------IWHPRQP  718 (733)
T ss_pred             eeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee---------------------------cccCCCc
Confidence            999999999999532      11   235677788765    6666                           8999999


Q ss_pred             eEEEeeCCCceEEC
Q 012799          443 LLLSGSKDSTLKVT  456 (456)
Q Consensus       443 ~l~s~s~Dg~v~iW  456 (456)
                      +|+++|.||+|++|
T Consensus       719 WLfsAGAd~tirlf  732 (733)
T KOG0650|consen  719 WLFSAGADGTIRLF  732 (733)
T ss_pred             eEEecCCCceEEee
Confidence            99999999999998

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.7e-30  Score=225.59  Aligned_cols=261  Identities=22%  Similarity=0.373  Sum_probs=215.8

Q ss_pred             CCcccEE---EEEEC-CCCCeEEEEECCCcEEEEeCCCCc------ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799          106 GHTEAVL---SVAFS-PDGRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (456)
Q Consensus       106 ~h~~~V~---~~~~s-~~~~~l~~~~~d~~v~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  175 (456)
                      .|...|.   .+..+ |++++|++||.||.|++|++....      ...+++.|.+.|..++...+++.|++++.|-+|+
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK   98 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK   98 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence            3445555   45554 366789999999999999986432      2567788999999999999999999999999999


Q ss_pred             EEeCCCCC-CccccccCcccceEEEEe-cccccCCCCCEEEEEeCCCcEEEEECCCCeE--E--------EEec-CcCcc
Q 012799          176 CWDPQTGK-PSGNPLSGHKKWITGISW-EPVHLNAPCRRFVSASKDGDARIWDVSLRKC--V--------ICLS-GHTLA  242 (456)
Q Consensus       176 vwd~~~~~-~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~--------~~~~-~~~~~  242 (456)
                      +|+...+. .....+..|...|.++++ -+     +...+|+||.|+.|.+||++++..  +        ..+. ++...
T Consensus        99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak-----~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s  173 (735)
T KOG0308|consen   99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-----NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS  173 (735)
T ss_pred             EeecccCcchhHhhhhcccchheeeeeccc-----CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence            99998774 223467889999999998 44     678999999999999999997722  2        2222 78889


Q ss_pred             EEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799          243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (456)
Q Consensus       243 v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (456)
                      |.+++.++.| .+++|+..+.+++||.++++.+..+++|...|..+..+++                             
T Consensus       174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD-----------------------------  224 (735)
T KOG0308|consen  174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD-----------------------------  224 (735)
T ss_pred             eeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC-----------------------------
Confidence            9999999999 8899999999999999999999999999999999999988                             


Q ss_pred             hhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecc
Q 012799          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (456)
Q Consensus       322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  401 (456)
                             +..+++++.||+|++||+... ..+..+..|...|+++..+|+-.++++|+.||.|..=|+++......+-..
T Consensus       225 -------Gt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~  296 (735)
T KOG0308|consen  225 -------GTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE  296 (735)
T ss_pred             -------CCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC
Confidence                   777999999999999997654 456668899999999999999999999999999999999985433333333


Q ss_pred             cccEEEE
Q 012799          402 VGPVYQI  408 (456)
Q Consensus       402 ~~~v~~i  408 (456)
                      ..+|..+
T Consensus       297 daPv~~l  303 (735)
T KOG0308|consen  297 DAPVLKL  303 (735)
T ss_pred             CCchhhh
Confidence            4444444

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=4.9e-29  Score=222.48  Aligned_cols=289  Identities=24%  Similarity=0.304  Sum_probs=230.5

Q ss_pred             ccccCCcccEEEEEECCC-----------CCeEEEEECCCcEEEEeCCCCcceeE-------------------------
Q 012799          102 ATIAGHTEAVLSVAFSPD-----------GRQLASGSGDTTVRLWDLNTQTPMFK-------------------------  145 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~-----------~~~l~~~~~d~~v~vwd~~~~~~~~~-------------------------  145 (456)
                      ..+.-|...|+.+.--|-           ..-+.|++.|++|++|++..+..-..                         
T Consensus       363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d  442 (1080)
T KOG1408|consen  363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD  442 (1080)
T ss_pred             eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence            345568888888876651           12488999999999999875211000                         


Q ss_pred             ------------EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEE
Q 012799          146 ------------CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF  213 (456)
Q Consensus       146 ------------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l  213 (456)
                                  .-+....+.+++.+|+|++||+|..-|+++||++.+-+... ....|..+|.++.|+....  ..++|
T Consensus       443 ~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~-~~eAHesEilcLeyS~p~~--~~kLL  519 (1080)
T KOG1408|consen  443 ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC-FMEAHESEILCLEYSFPVL--TNKLL  519 (1080)
T ss_pred             ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh-heecccceeEEEeecCchh--hhHhh
Confidence                        00234569999999999999999999999999999877665 6789999999999986333  34789


Q ss_pred             EEEeCCCcEEEEECCC-CeEEEEecCcCccEEEEEeCCCC---eEEEEeCCCcEEEEECCCCeEEEEeec-----CCcce
Q 012799          214 VSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQGKLIRELKG-----HGHWV  284 (456)
Q Consensus       214 ~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i  284 (456)
                      ++++.|..|++||+.. -.++.++.+|...|+++.|-..|   .+++++.|..|.+=-.+.......+..     ....+
T Consensus       520 ASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl  599 (1080)
T KOG1408|consen  520 ASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL  599 (1080)
T ss_pred             hhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence            9999999999999864 45677889999999999998876   889999998775432221111122211     23457


Q ss_pred             EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc--ccccccc
Q 012799          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQL  362 (456)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~  362 (456)
                      ..+++.|.                                    ..++++++.|..|+|||+..++.....  -.+|++.
T Consensus       600 YDm~Vdp~------------------------------------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~  643 (1080)
T KOG1408|consen  600 YDMAVDPT------------------------------------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD  643 (1080)
T ss_pred             EEeeeCCC------------------------------------cceEEEEecccceEEEeccccceeeeecccccCCCc
Confidence            77888877                                    556999999999999998877643322  2456778


Q ss_pred             EeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC
Q 012799          363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR  442 (456)
Q Consensus       363 v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  442 (456)
                      .-.+...|.|.|||+.+.|.++.++|..+|+++....||...|+.+                           .|.+|.+
T Consensus       644 lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~---------------------------kF~nDCk  696 (1080)
T KOG1408|consen  644 LIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGV---------------------------KFLNDCK  696 (1080)
T ss_pred             eEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeee---------------------------eecccch
Confidence            8889999999999999999999999999999999999999999999                           8899999


Q ss_pred             eEEEeeCCCceEEC
Q 012799          443 LLLSGSKDSTLKVT  456 (456)
Q Consensus       443 ~l~s~s~Dg~v~iW  456 (456)
                      .|++.+.||.|.||
T Consensus       697 HlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  697 HLISVSGDGCIFVW  710 (1080)
T ss_pred             hheeecCCceEEEE
Confidence            99999999999999

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=4.7e-29  Score=233.18  Aligned_cols=270  Identities=26%  Similarity=0.358  Sum_probs=216.6

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC------------------CcceeEEecCCCCEEEEEEc
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT------------------QTPMFKCTGHKNWVLCIAWS  159 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~  159 (456)
                      .+...+...|.+.|+|+.|+|||++||+|+.|+.|.||....                  -+....+.+|...|..++|+
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            445566788999999999999999999999999999999772                  12456778999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc
Q 012799          160 ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH  239 (456)
Q Consensus       160 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  239 (456)
                      |++.+|++++.|++|.+||..+.+.. +.+.+|...|..+.|.|     -|++|++-+.|++|++|++.+....+.+.++
T Consensus       139 p~~~~lvS~s~DnsViiwn~~tF~~~-~vl~~H~s~VKGvs~DP-----~Gky~ASqsdDrtikvwrt~dw~i~k~It~p  212 (942)
T KOG0973|consen  139 PDDSLLVSVSLDNSVIIWNAKTFELL-KVLRGHQSLVKGVSWDP-----IGKYFASQSDDRTLKVWRTSDWGIEKSITKP  212 (942)
T ss_pred             CCccEEEEecccceEEEEccccceee-eeeecccccccceEECC-----ccCeeeeecCCceEEEEEcccceeeEeeccc
Confidence            99999999999999999999999554 48999999999999999     8999999999999999998887777777554


Q ss_pred             C------ccEEEEEeCCCC-eEEEEeC----CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccC
Q 012799          240 T------LAVTCVKWGGDG-VIYTGSQ----DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (456)
Q Consensus       240 ~------~~v~~~~~~~~~-~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  308 (456)
                      .      ..+..+.|+||| +|++...    -.++.|.+..+.+.-..+-+|..++.++.|+|...-.- ..++......
T Consensus       213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~-~~ng~~~~~~  291 (942)
T KOG0973|consen  213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERN-NKNGTSTQPN  291 (942)
T ss_pred             hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccc-cccCCccCCC
Confidence            2      457899999999 6665432    24688999888888889999999999999998621000 0000000000


Q ss_pred             ChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (456)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  388 (456)
                                        ..-..+++|+.|++|.||.....++......-....|.+++|+|||..|+++|.||+|.+..
T Consensus       292 ------------------~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~  353 (942)
T KOG0973|consen  292 ------------------CYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH  353 (942)
T ss_pred             ------------------cceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence                              00125889999999999997555544444444456799999999999999999999999999


Q ss_pred             CCCC
Q 012799          389 GTTG  392 (456)
Q Consensus       389 ~~~~  392 (456)
                      .+..
T Consensus       354 Fee~  357 (942)
T KOG0973|consen  354 FEEK  357 (942)
T ss_pred             cchH
Confidence            8763

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.3e-29  Score=223.76  Aligned_cols=314  Identities=21%  Similarity=0.279  Sum_probs=243.9

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC--cceeEEecCCCCEEEEEE-cCCCCEEEEEeCCCeE
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAW-SADGKHLVSGSKAGEL  174 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~dg~i  174 (456)
                      .+++..++.|.++|+.++...+++.|+++|.|-+|++|+...+  -++.++..|.+.|.|+++ .++...+|+||.|+.|
T Consensus        63 ~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~I  142 (735)
T KOG0308|consen   63 TPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKI  142 (735)
T ss_pred             cchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccE
Confidence            3467889999999999999999999999999999999999877  567788899999999999 7788899999999999


Q ss_pred             EEEeCCCCCC----------ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEE
Q 012799          175 QCWDPQTGKP----------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT  244 (456)
Q Consensus       175 ~vwd~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  244 (456)
                      .+||++++..          ......++...|++++..+     .|..+++|+..+.+++||.++.+.+..+.+|...|.
T Consensus       143 flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-----t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr  217 (735)
T KOG0308|consen  143 FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-----TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR  217 (735)
T ss_pred             EEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-----cceEEEecCcccceEEeccccccceeeeeccccceE
Confidence            9999997732          1112237888999999888     788999999999999999999999999999999999


Q ss_pred             EEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799          245 CVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (456)
Q Consensus       245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (456)
                      ++..+++| .+++++.||+|++||+...+++.++..|...+.++..+|..                              
T Consensus       218 ~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf------------------------------  267 (735)
T KOG0308|consen  218 VLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF------------------------------  267 (735)
T ss_pred             EEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc------------------------------
Confidence            99999999 99999999999999999999999999999999999998873                              


Q ss_pred             ccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc
Q 012799          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG  403 (456)
Q Consensus       324 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  403 (456)
                            ..+++|+.||.|+.=|+++..... .+...+.+|..+..+.+.+-+-+++.|+.|+-|..+-.-.+.....-..
T Consensus       268 ------~~vYsG~rd~~i~~Tdl~n~~~~t-lick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~  340 (735)
T KOG0308|consen  268 ------THVYSGGRDGNIYRTDLRNPAKST-LICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDF  340 (735)
T ss_pred             ------ceEEecCCCCcEEecccCCchhhe-EeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCc
Confidence                  459999999999999988764332 2334456677777775555557778899999997653222111110000


Q ss_pred             cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       404 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ..++..-   ..+.....-..+..+..++..-+.-.|.++++|-...|.+.+|
T Consensus       341 ~~T~~~~---~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lw  390 (735)
T KOG0308|consen  341 FSTDSNN---HSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALW  390 (735)
T ss_pred             ccccCCC---ccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEE
Confidence            0011000   0000000111123333334334556788999999999999998

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.97  E-value=2.3e-28  Score=217.44  Aligned_cols=325  Identities=24%  Similarity=0.413  Sum_probs=239.0

Q ss_pred             cccccccCCcccEEEEEECCCCC---eEEEEECCCcEEEEeCCCCc---------------------ce----------e
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGR---QLASGSGDTTVRLWDLNTQT---------------------PM----------F  144 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~---~l~~~~~d~~v~vwd~~~~~---------------------~~----------~  144 (456)
                      +....|.||.+.|.+++|...+.   +||++|.|..||||.+.-+.                     ..          .
T Consensus       182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea  261 (764)
T KOG1063|consen  182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA  261 (764)
T ss_pred             eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence            45678999999999999997554   89999999999999864221                     01          1


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc------cccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN------PLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (456)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~  218 (456)
                      .+.||.+.|+++.|+|.+..|++++.|.++.+|...+..-+..      ...+......+.-|+|     +++.+++-+.
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-----n~~~ii~~g~  336 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-----NSNVIIAHGR  336 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-----CCCEEEEecc
Confidence            1238999999999999999999999999999998876532110      1223344567888888     8899999999


Q ss_pred             CCcEEEEECCC---CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCe----EEEEeecCCcceEEEEec
Q 012799          219 DGDARIWDVSL---RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK----LIRELKGHGHWVNSLALS  290 (456)
Q Consensus       219 dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~  290 (456)
                      .|..++|....   ......+.+|...|++++|+|.| +|++.+.|.+-|+|-.-..+    .+..-+.|+..++++++-
T Consensus       337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v  416 (764)
T KOG1063|consen  337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV  416 (764)
T ss_pred             cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence            99999998322   23445568999999999999999 99999999999998654111    122224577788888877


Q ss_pred             C-cceeeeccccCCCCccCChHHHHHHHH---------------------------------------------------
Q 012799          291 T-EYALRTGAFDHTGKQYSSPEEMKKAAL---------------------------------------------------  318 (456)
Q Consensus       291 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------  318 (456)
                      + +..+.++......+.+..+........                                                   
T Consensus       417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~  496 (764)
T KOG1063|consen  417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA  496 (764)
T ss_pred             cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence            7 555555444333333332221111000                                                   


Q ss_pred             ----------------hh--------------hhhccCCCCCEEEEEeCCC-----cEEEEecCCCCCCccccccccccE
Q 012799          319 ----------------ER--------------YNKIKGNAPERLVSGSDDF-----TMFLWEPAVSKQPKTRMTGHQQLV  363 (456)
Q Consensus       319 ----------------~~--------------~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v  363 (456)
                                      ..              +.....+.++.+++++...     .|++|+..+ ......+.+|.-.|
T Consensus       497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLTV  575 (764)
T KOG1063|consen  497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLTV  575 (764)
T ss_pred             chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-hhhhheecccceEE
Confidence                            00              0011345677777777644     589999543 44455789999999


Q ss_pred             eEEEECCCCCEEEEEECCCcEEEEeCCCCeE----EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEec
Q 012799          364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA  439 (456)
Q Consensus       364 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  439 (456)
                      +.++|||||++|++.+.|.++.+|.......    ....+.|+.-|++.                           .|+|
T Consensus       576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc---------------------------sW~p  628 (764)
T KOG1063|consen  576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC---------------------------SWSP  628 (764)
T ss_pred             EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEc---------------------------ccCc
Confidence            9999999999999999999999998754322    33467899999999                           9999


Q ss_pred             CCCeEEEeeCCCceEEC
Q 012799          440 DSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       440 dg~~l~s~s~Dg~v~iW  456 (456)
                      ++.+++|+|.|.+|+||
T Consensus       629 de~~FaTaSRDK~VkVW  645 (764)
T KOG1063|consen  629 DEKYFATASRDKKVKVW  645 (764)
T ss_pred             ccceeEEecCCceEEEE
Confidence            99999999999999999

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=5.5e-29  Score=213.48  Aligned_cols=277  Identities=22%  Similarity=0.429  Sum_probs=231.8

Q ss_pred             cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC---cceeEEe--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      ..|.+-|.++.+|...+++.||+ .|.|+|||+...   .++..+.  .....|.++...|||+.|++|+.-.++.|||+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            46999999999999999999996 567999999643   2333332  35678999999999999999999999999999


Q ss_pred             CCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE
Q 012799          180 QTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (456)
Q Consensus       180 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~  257 (456)
                      ....... ..+.......++++.+|     |.+..+++..||.|.|||+.+...++.+++|...+.||.++++| .|.+|
T Consensus       495 AapTprikaeltssapaCyALa~sp-----DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTG  569 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISP-----DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTG  569 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCC-----ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecC
Confidence            8665422 12233334456777777     88999999999999999999999999999999999999999999 99999


Q ss_pred             eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (456)
                      +-|++|+.||+++++.+.... ..+.|.++..+|.                                    +++++.|-.
T Consensus       570 GlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~------------------------------------~dWlavGMe  612 (705)
T KOG0639|consen  570 GLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPT------------------------------------GDWLAVGME  612 (705)
T ss_pred             CCccceeehhhhhhhhhhhhh-hhhhheecccCCC------------------------------------ccceeeecc
Confidence            999999999999988766554 4567888888887                                    667999999


Q ss_pred             CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeec
Q 012799          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (456)
Q Consensus       338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  417 (456)
                      ++.+.+....  +.....+.-|++.|.++.|.+.|+++++.+.|+.+..|...-|..+...+ ...+|.++         
T Consensus       613 ns~vevlh~s--kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsC---------  680 (705)
T KOG0639|consen  613 NSNVEVLHTS--KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSC---------  680 (705)
T ss_pred             cCcEEEEecC--CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceee---------
Confidence            9999887743  34455677899999999999999999999999999999999998887766 46678888         


Q ss_pred             CCCCceeeecccccccceeEecCCCeEEEeeCCCceE
Q 012799          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLK  454 (456)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~  454 (456)
                                        ..|.|.++++|||.|..-.
T Consensus       681 ------------------DIS~ddkyIVTGSGdkkAT  699 (705)
T KOG0639|consen  681 ------------------DISFDDKYIVTGSGDKKAT  699 (705)
T ss_pred             ------------------eeccCceEEEecCCCcceE
Confidence                              7899999999999986543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.97  E-value=4.4e-28  Score=194.46  Aligned_cols=299  Identities=23%  Similarity=0.336  Sum_probs=228.6

Q ss_pred             ccEEEEEEeccceEEEeecccccccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCcc----------ee---
Q 012799           79 EKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTP----------MF---  144 (456)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~----------~~---  144 (456)
                      ..++.++..++.-+.           ..|.+.|+++...+ .|+++++|+.||.|.+||+++...          +.   
T Consensus        25 rRil~L~Ln~d~d~~-----------r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~   93 (397)
T KOG4283|consen   25 RRILSLQLNNDKDFV-----------RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVA   93 (397)
T ss_pred             hhhheeeccCCccee-----------ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeecc
Confidence            345555555554332           46999999999998 589999999999999999976430          00   


Q ss_pred             --EEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799          145 --KCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (456)
Q Consensus       145 --~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~  221 (456)
                        .-.+|.-.|..+.|-| |...+.+++.|.++++||.++-+...  .....+.|++-+++|...  .-.++++|..|-.
T Consensus        94 ~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~--~F~me~~VYshamSp~a~--sHcLiA~gtr~~~  169 (397)
T KOG4283|consen   94 KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV--DFKMEGKVYSHAMSPMAM--SHCLIAAGTRDVQ  169 (397)
T ss_pred             ccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE--EeecCceeehhhcChhhh--cceEEEEecCCCc
Confidence              1136888999999999 66688899999999999999877653  344567888889988653  2357788888899


Q ss_pred             EEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCC-eEEEEee--------------cCCcce
Q 012799          222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG-KLIRELK--------------GHGHWV  284 (456)
Q Consensus       222 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~-~~~~~~~--------------~~~~~i  284 (456)
                      |++-|+.+|.+...+.+|.+.|.++.|+|..  .|++|+.||.|++||++.. .+...+.              .|.+.+
T Consensus       170 VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv  249 (397)
T KOG4283|consen  170 VRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV  249 (397)
T ss_pred             EEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence            9999999999999999999999999999987  8899999999999999864 3333333              344556


Q ss_pred             EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc--cccc-
Q 012799          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--GHQQ-  361 (456)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~-  361 (456)
                      +.++|..+                                    +.++++.+.|..+++|+...+......+.  .|.. 
T Consensus       250 ngla~tSd------------------------------------~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~  293 (397)
T KOG4283|consen  250 NGLAWTSD------------------------------------ARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT  293 (397)
T ss_pred             eeeeeccc------------------------------------chhhhhccCccceEEeecccCccccccccccccccc
Confidence            66666655                                    67799999999999999877654332221  1111 


Q ss_pred             --cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEec
Q 012799          362 --LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA  439 (456)
Q Consensus       362 --~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  439 (456)
                        .-..+. +.+...++---.++.+.++.+-+|..+..+..|-..+.+.                           ++-|
T Consensus       294 ~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~---------------------------~~~~  345 (397)
T KOG4283|consen  294 TSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCA---------------------------AYRP  345 (397)
T ss_pred             ccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEE---------------------------eecC
Confidence              111122 3344455555567899999999999999999998888888                           7788


Q ss_pred             CCCeEEEeeCCCceEEC
Q 012799          440 DSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       440 dg~~l~s~s~Dg~v~iW  456 (456)
                      +=+...+|+.|+.+..|
T Consensus       346 ~fq~~~tg~~d~ni~~w  362 (397)
T KOG4283|consen  346 DFEQCFTGDMNGNIYMW  362 (397)
T ss_pred             chhhhhccccCCccccc
Confidence            88889999999999887

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=6.6e-28  Score=223.20  Aligned_cols=230  Identities=18%  Similarity=0.261  Sum_probs=176.7

Q ss_pred             ccccccCCcccEEEEEECCC-CCeEEEEECCCcEEEEeCCCCc--------ceeEEecCCCCEEEEEEcCCCCE-EEEEe
Q 012799          100 CSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT--------PMFKCTGHKNWVLCIAWSADGKH-LVSGS  169 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-l~s~~  169 (456)
                      ....+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.        ++..+.+|...|.+++|+|++.. |++++
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            45678999999999999997 7899999999999999997542        34467889999999999998875 57899


Q ss_pred             CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEE---
Q 012799          170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV---  246 (456)
Q Consensus       170 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~---  246 (456)
                      .|++|++||+++++.... + .|...|.+++|+|     +|.+|++++.|+.|++||+++++.+..+.+|.+.+.+.   
T Consensus       146 ~DgtIrIWDl~tg~~~~~-i-~~~~~V~Slswsp-----dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~  218 (568)
T PTZ00420        146 FDSFVNIWDIENEKRAFQ-I-NMPKKLSSLKWNI-----KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIW  218 (568)
T ss_pred             CCCeEEEEECCCCcEEEE-E-ecCCcEEEEEECC-----CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEE
Confidence            999999999998876542 2 3567899999999     99999999999999999999999999999998765432   


Q ss_pred             --EeCCCC-eEEEEeCCC----cEEEEECCC-CeEEEEeecCC--cceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799          247 --KWGGDG-VIYTGSQDC----TIKVWETTQ-GKLIRELKGHG--HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (456)
Q Consensus       247 --~~~~~~-~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (456)
                        .|++++ ++++++.|+    .|++||++. ++++..+..+.  ..+.. .+.++                        
T Consensus       219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p-~~D~~------------------------  273 (568)
T PTZ00420        219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP-HYDES------------------------  273 (568)
T ss_pred             eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE-eeeCC------------------------
Confidence              344666 888877764    799999995 55555543222  11111 12222                        


Q ss_pred             HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC
Q 012799          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG  372 (456)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~  372 (456)
                                 .+.++++|+.|+.|++|++..+.........+..+..+++|.|..
T Consensus       274 -----------tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        274 -----------TGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             -----------CCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence                       256789999999999999865532211222356778899999964

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.2e-29  Score=206.04  Aligned_cols=242  Identities=22%  Similarity=0.364  Sum_probs=215.3

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  181 (456)
                      .|.-|.++|.|+.|+.|..+||+|+.||.|++|.+.+|.++..+. .|...|+|+.|+.|+..+++++.|.++++.-+++
T Consensus       258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS  337 (508)
T KOG0275|consen  258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS  337 (508)
T ss_pred             ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc
Confidence            455689999999999999999999999999999999999999987 8999999999999999999999999999999999


Q ss_pred             CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC--cCccEEEEEeCCCC--eEEEE
Q 012799          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--HTLAVTCVKWGGDG--VIYTG  257 (456)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~--~l~~~  257 (456)
                      |+.+. .+.+|...|+...|.+     +|.++++++.||+|++|+..+.+|+.+++.  ...+|..+...|.+  .++++
T Consensus       338 GK~LK-EfrGHsSyvn~a~ft~-----dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC  411 (508)
T KOG0275|consen  338 GKCLK-EFRGHSSYVNEATFTD-----DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC  411 (508)
T ss_pred             chhHH-HhcCccccccceEEcC-----CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence            99886 6899999999999999     999999999999999999999999988864  45678888888876  89999


Q ss_pred             eCCCcEEEEECCCCeEEEEeec---CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          258 SQDCTIKVWETTQGKLIRELKG---HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      ...+++.+.++. |+.++++..   .++...+..++|.                                    ++++++
T Consensus       412 Nrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpk------------------------------------GewiYc  454 (508)
T KOG0275|consen  412 NRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPK------------------------------------GEWIYC  454 (508)
T ss_pred             cCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCC------------------------------------CcEEEE
Confidence            999999999975 677777743   3455666677776                                    677999


Q ss_pred             EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  388 (456)
                      .++|+.++.|....++ ....+.-|+..+..++-+|..++||+-+.||.+++|.
T Consensus       455 igED~vlYCF~~~sG~-LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  455 IGEDGVLYCFSVLSGK-LERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EccCcEEEEEEeecCc-eeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            9999999999976554 5556778899999999999999999999999999995

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.3e-28  Score=210.53  Aligned_cols=246  Identities=26%  Similarity=0.370  Sum_probs=204.9

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeC
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~  179 (456)
                      .+++.-..+.|.++.|-.||++||+|...|.|+|||+.+...+..+.+|..+|..+.|+|+ +..+++|+.|+.+++||+
T Consensus        61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~  140 (487)
T KOG0310|consen   61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL  140 (487)
T ss_pred             hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence            4456667889999999999999999999999999998776678889999999999999994 567778888999999999


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCCCCeEEEEe
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYTGS  258 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~~~  258 (456)
                      .+... ...+.+|...|.+.+|+|.    ++..+++||.||.|++||++.. ..+..+ .|..+|..+.+-|.|.+++..
T Consensus       141 s~a~v-~~~l~~htDYVR~g~~~~~----~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasA  214 (487)
T KOG0310|consen  141 STAYV-QAELSGHTDYVRCGDISPA----NDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASA  214 (487)
T ss_pred             CCcEE-EEEecCCcceeEeeccccC----CCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEc
Confidence            98875 4478999999999999994    4568999999999999999987 555555 489999999999998444444


Q ss_pred             CCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799          259 QDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (456)
Q Consensus       259 ~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (456)
                      ....+++||+.+| +.+..+..|...|+|+.+..+                                    +..|++|+-
T Consensus       215 gGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~------------------------------------~~rLlS~sL  258 (487)
T KOG0310|consen  215 GGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASD------------------------------------STRLLSGSL  258 (487)
T ss_pred             CCCeEEEEEecCCceehhhhhcccceEEEEEeecC------------------------------------CceEeeccc
Confidence            5568999999965 455555559999999999876                                    567999999


Q ss_pred             CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                      |+.+++||+.+ -+.+..+ .-.++|.+++.+|+++.++.|..||.+.+-+..
T Consensus       259 D~~VKVfd~t~-~Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  259 DRHVKVFDTTN-YKVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             ccceEEEEccc-eEEEEee-ecccceeeEEecCCCceEEEecccceeeeehhh
Confidence            99999999433 3333333 346789999999999999999999988877543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=5.9e-29  Score=208.19  Aligned_cols=242  Identities=22%  Similarity=0.366  Sum_probs=206.4

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      ...+|.|-.++|+++.|.++++++++++.|+.+++|+++..+...++.+|.+.|+++.|......+++|+.|.+|++||+
T Consensus       211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl  290 (459)
T KOG0288|consen  211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL  290 (459)
T ss_pred             hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence            56788999999999999999999999999999999999999999999999999999999987777999999999999999


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~  258 (456)
                      ....+....+.+.  .+.++...       ...+++|-.|++|++||+++..+......+. .|+++..++++ .+++++
T Consensus       291 ~k~~C~kt~l~~S--~cnDI~~~-------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss  360 (459)
T KOG0288|consen  291 QKAYCSKTVLPGS--QCNDIVCS-------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS  360 (459)
T ss_pred             hhhheeccccccc--cccceEec-------ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec
Confidence            9987766544432  34444433       3578899999999999999999999887665 99999999999 889999


Q ss_pred             CCCcEEEEECCCCeEEEEeecC----CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          259 QDCTIKVWETTQGKLIRELKGH----GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      .|.++.+.|+++.+....+...    ....+.+.|+|+                                    +.|+++
T Consensus       361 RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd------------------------------------~~YvaA  404 (459)
T KOG0288|consen  361 RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD------------------------------------GSYVAA  404 (459)
T ss_pred             CCCceeeeecccccEEEEeeccccccccccceeEECCC------------------------------------Cceeee
Confidence            9999999999998888777542    334777888887                                    778999


Q ss_pred             EeCCCcEEEEecCCCCCCccccccccc-cEeEEEECCCCCEEEEEECCCcEEEE
Q 012799          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQ-LVNHVYFSPDGQWVASASFDKSIKLW  387 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~s~~~dg~i~iw  387 (456)
                      |+.||.|+||++.+++.....-..+.. .|++++|+|.|..|++++.++.+.+|
T Consensus       405 GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  405 GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            999999999997776544333333333 69999999999999999999999999

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=9.8e-28  Score=203.75  Aligned_cols=281  Identities=17%  Similarity=0.245  Sum_probs=227.2

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC--cceeEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCC
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGK  183 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~  183 (456)
                      -.+.|+++.|+|...+|++++.||+++||.++..  ..+..+.-...+|.+..|.|+|. .+++++....+..||+.+.+
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            3578999999999999999999999999988643  45566666788999999999999 89999999999999999887


Q ss_pred             Cccc-cccCcc-cceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCC
Q 012799          184 PSGN-PLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD  260 (456)
Q Consensus       184 ~~~~-~~~~~~-~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d  260 (456)
                      .... ...++. ..+.....++     ++++++..|..|.|.+....+++.+..++ -.+.|..++|+.++ .|++++.+
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVSh-----d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~  365 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSH-----DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGT  365 (514)
T ss_pred             cccccCCCCcccchhheeEecC-----CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCC
Confidence            5431 222333 3455556666     88999999999999999999999888876 56789999999999 88889999


Q ss_pred             CcEEEEECCCCeEEEEeecCCc-ceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799          261 CTIKVWETTQGKLIRELKGHGH-WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (456)
Q Consensus       261 g~i~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  339 (456)
                      |.|.+||++...++..+...++ .-++++.+++                                    +.++++|+..|
T Consensus       366 GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~n------------------------------------g~ylA~GS~~G  409 (514)
T KOG2055|consen  366 GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLN------------------------------------GSYLATGSDSG  409 (514)
T ss_pred             ceEEEEecCCcceEEEEeecCccceeeeeecCC------------------------------------CceEEeccCcc
Confidence            9999999999999888874332 2345666665                                    66799999999


Q ss_pred             cEEEEecCC-----CCCCccccccccccEeEEEECCCCCEEEEEE--CCCcEEEEeCCCCeEEEEEeccc---ccEEEEE
Q 012799          340 TMFLWEPAV-----SKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFVAVFRGHV---GPVYQIR  409 (456)
Q Consensus       340 ~i~iwd~~~-----~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~---~~v~~i~  409 (456)
                      .|.|||...     ...++..+..-...|++++|+||+++||.+|  .+..+++-.+.+......+....   +.|+++ 
T Consensus       410 iVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~-  488 (514)
T KOG2055|consen  410 IVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM-  488 (514)
T ss_pred             eEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEE-
Confidence            999999543     2345555556667899999999999988776  45789999988877666555443   345666 


Q ss_pred             eeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                                +|||.|.+||.|.++|.|.+|
T Consensus       489 --------------------------aFSP~sG~lAvGNe~grv~l~  509 (514)
T KOG2055|consen  489 --------------------------AFSPNSGYLAVGNEAGRVHLF  509 (514)
T ss_pred             --------------------------EecCCCceEEeecCCCceeeE
Confidence                                      999999999999999999998

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.6e-28  Score=207.59  Aligned_cols=247  Identities=23%  Similarity=0.376  Sum_probs=211.9

Q ss_pred             CeEEEEE-CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799          121 RQLASGS-GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI  199 (456)
Q Consensus       121 ~~l~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  199 (456)
                      .+++++. ....+.+|.+..........--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+++
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~-v~~aHYQ~ITcL  129 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN-VLSAHYQSITCL  129 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH-HHHhhccceeEE
Confidence            5666664 44589999998766555444467889999999999999999999999999999999887 569999999999


Q ss_pred             EecccccCCCCCEEEEEeCCCcEEEEECC---------CCeEEEEecCcCccEEEEEeCCCC---eEEEEeCCCcEEEEE
Q 012799          200 SWEPVHLNAPCRRFVSASKDGDARIWDVS---------LRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWE  267 (456)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~iwd  267 (456)
                      .|+-     ||.+|++||.||.|.+|++.         +-+++..+..|.-+|+++...+.|   ++++++.|.++++||
T Consensus       130 ~fs~-----dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd  204 (476)
T KOG0646|consen  130 KFSD-----DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD  204 (476)
T ss_pred             EEeC-----CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence            9998     99999999999999999863         456788899999999999998765   999999999999999


Q ss_pred             CCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecC
Q 012799          268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (456)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  347 (456)
                      +..+..+.++. ....+.+++++|.                                    ...++.|+.+|.|.+.++.
T Consensus       205 lS~g~LLlti~-fp~si~av~lDpa------------------------------------e~~~yiGt~~G~I~~~~~~  247 (476)
T KOG0646|consen  205 LSLGVLLLTIT-FPSSIKAVALDPA------------------------------------ERVVYIGTEEGKIFQNLLF  247 (476)
T ss_pred             eccceeeEEEe-cCCcceeEEEccc------------------------------------ccEEEecCCcceEEeeehh
Confidence            99999988887 5677999999987                                    4569999999999988764


Q ss_pred             CCC---------------CCccccccccc--cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799          348 VSK---------------QPKTRMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       348 ~~~---------------~~~~~~~~~~~--~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      ...               .....+.+|.+  .|+|++++-||.+|++|+.||.|+|||+.+.++++++....++|+.+.+
T Consensus       248 ~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i  327 (476)
T KOG0646|consen  248 KLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI  327 (476)
T ss_pred             cCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence            332               12344568888  9999999999999999999999999999999999888767788888855

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.8e-28  Score=208.19  Aligned_cols=255  Identities=25%  Similarity=0.327  Sum_probs=210.0

Q ss_pred             eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc----c------------cc-cCcccceEEEEecccc
Q 012799          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG----N------------PL-SGHKKWITGISWEPVH  205 (456)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~------------~~-~~~~~~v~~~~~~~~~  205 (456)
                      ...+..|..++.+++++|++++.++++.+|+|.-|++.+++...    .            .. ..|...+.+++.++  
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~--  212 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS--  212 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC--
Confidence            44556799999999999999999999999999999998877331    0            11 27888899999999  


Q ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcce
Q 012799          206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWV  284 (456)
Q Consensus       206 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i  284 (456)
                         ++++|++|+.|..|.||+.++.+.+..+++|.+.|.+++|-... .+++++.|+.+++|++.....+.++.+|.+.|
T Consensus       213 ---Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v  289 (479)
T KOG0299|consen  213 ---DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV  289 (479)
T ss_pred             ---CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence               99999999999999999999999999999999999999998755 99999999999999999999999999999999


Q ss_pred             EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEe
Q 012799          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN  364 (456)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  364 (456)
                      ..+.....                                    ...+-+|+.|+++++|++...  ....+.+|.+.+-
T Consensus       290 ~~IdaL~r------------------------------------eR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sid  331 (479)
T KOG0299|consen  290 LGIDALSR------------------------------------ERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSID  331 (479)
T ss_pred             eeechhcc------------------------------------cceEEeccccceeEEEecccc--ceeeeeCCCCCee
Confidence            99887654                                    333666679999999998443  3445678888999


Q ss_pred             EEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeE
Q 012799          365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL  444 (456)
Q Consensus       365 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  444 (456)
                      |++|-.+ ..+++|+.+|.|.+|++...+++.+.+.-.+-+..+               .....+..++.++..|...++
T Consensus       332 cv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~---------------~~~~~~~Witsla~i~~sdL~  395 (479)
T KOG0299|consen  332 CVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL---------------DPVNGNFWITSLAVIPGSDLL  395 (479)
T ss_pred             eEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCc---------------cccccccceeeeEecccCceE
Confidence            9999754 578999999999999999999888765211111100               011122455666889999999


Q ss_pred             EEeeCCCceEEC
Q 012799          445 LSGSKDSTLKVT  456 (456)
Q Consensus       445 ~s~s~Dg~v~iW  456 (456)
                      ++|+.+|.||+|
T Consensus       396 asGS~~G~vrLW  407 (479)
T KOG0299|consen  396 ASGSWSGCVRLW  407 (479)
T ss_pred             EecCCCCceEEE
Confidence            999999999999

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.4e-28  Score=198.06  Aligned_cols=254  Identities=28%  Similarity=0.478  Sum_probs=215.8

Q ss_pred             ecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeC------CC------------------------------
Q 012799           96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL------NT------------------------------  139 (456)
Q Consensus        96 ~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~------~~------------------------------  139 (456)
                      ..++|..++.||.+.|+++.|++.+.++++++.|++-.||..      ..                              
T Consensus       178 Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD  257 (481)
T KOG0300|consen  178 ESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD  257 (481)
T ss_pred             ccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence            457899999999999999999999999999999999999972      11                              


Q ss_pred             ----CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEE
Q 012799          140 ----QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS  215 (456)
Q Consensus       140 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~  215 (456)
                          ..++..+.+|...|.+..|-..|+.+++++.|.+..+||++++..+. .+.+|....+.++-+|     ..+++++
T Consensus       258 ~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~-~LtGHd~ELtHcstHp-----tQrLVvT  331 (481)
T KOG0300|consen  258 GHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN-ILTGHDSELTHCSTHP-----TQRLVVT  331 (481)
T ss_pred             CceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec-cccCcchhccccccCC-----cceEEEE
Confidence                01455677999999999999999999999999999999999999876 8999999999999999     7789999


Q ss_pred             EeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCe-EEEEeecCCcceEEEEecCcc
Q 012799          216 ASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEY  293 (456)
Q Consensus       216 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~  293 (456)
                      .+.|.+.++||++.. ..+..|.+|...|+++.|.-+..+++|+.|.+|++||+++.+ ++.++. ..++++.++++...
T Consensus       332 sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~  410 (481)
T KOG0300|consen  332 SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGH  410 (481)
T ss_pred             eccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCC
Confidence            999999999999853 446778999999999999998899999999999999998754 566665 56678888887653


Q ss_pred             eeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC---CCccccccccccEeEEEECC
Q 012799          294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK---QPKTRMTGHQQLVNHVYFSP  370 (456)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~sp  370 (456)
                                                          ..++.-.++..|++||+....   .+...-.+|...|+|++|..
T Consensus       411 ------------------------------------~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~e  454 (481)
T KOG0300|consen  411 ------------------------------------PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLE  454 (481)
T ss_pred             ------------------------------------ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccc
Confidence                                                347788888999999976543   23345578999999999986


Q ss_pred             CCC--EEEEEECCCcEEEEeCCCC
Q 012799          371 DGQ--WVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       371 ~~~--~l~s~~~dg~i~iwd~~~~  392 (456)
                      +..  -|++++.|..+.-|.+...
T Consensus       455 ehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  455 EHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             cCcccccccccccceeeeeEeccc
Confidence            543  3889999999999998754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.9e-27  Score=191.48  Aligned_cols=276  Identities=18%  Similarity=0.318  Sum_probs=213.9

Q ss_pred             EEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 012799          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS  190 (456)
Q Consensus       111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  190 (456)
                      -.|+.|++.|.+||+|+.||.|.|||+.+...-..+.+|..+|++++||++|+.|++++.|..|.+||+..|.+..  ..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~--ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK--RI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee--EE
Confidence            6899999999999999999999999999999888999999999999999999999999999999999999998765  33


Q ss_pred             CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC----ccEEEEEeCCCC-eEEEEeCCCcEEE
Q 012799          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT----LAVTCVKWGGDG-VIYTGSQDCTIKV  265 (456)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~-~l~~~~~dg~i~i  265 (456)
                      ....+|+.+.|+|..    .+..++.-.+..-.+.++..++....-....    ....+..|++.| ++++|...|.+.+
T Consensus       104 rf~spv~~~q~hp~k----~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv  179 (405)
T KOG1273|consen  104 RFDSPVWGAQWHPRK----RNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV  179 (405)
T ss_pred             EccCccceeeecccc----CCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence            457889999999953    3344444444445555555432211111111    122334577888 9999999999999


Q ss_pred             EECCCCeEEEEeecCC-cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEE
Q 012799          266 WETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (456)
Q Consensus       266 wd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  344 (456)
                      +|..+-+++..++... ..|..+.++..                                    +++++.-+.|+.|+.|
T Consensus       180 ~~a~t~e~vas~rits~~~IK~I~~s~~------------------------------------g~~liiNtsDRvIR~y  223 (405)
T KOG1273|consen  180 YDAETLECVASFRITSVQAIKQIIVSRK------------------------------------GRFLIINTSDRVIRTY  223 (405)
T ss_pred             EecchheeeeeeeechheeeeEEEEecc------------------------------------CcEEEEecCCceEEEE
Confidence            9999999988887655 67778888776                                    6679999999999999


Q ss_pred             ecCCCC------C--Cccccc--cccccEeEEEECCCCCEEEEEEC-CCcEEEEeCCCCeEEEEEeccc-ccEEEEEeee
Q 012799          345 EPAVSK------Q--PKTRMT--GHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHV-GPVYQIRFEL  412 (456)
Q Consensus       345 d~~~~~------~--~~~~~~--~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~  412 (456)
                      ++..-.      .  +..++.  -....-.+++||.+|.|++.|+. -..++||....|.+++.+.|.. ....++    
T Consensus       224 e~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV----  299 (405)
T KOG1273|consen  224 EISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDV----  299 (405)
T ss_pred             ehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeec----
Confidence            965211      1  111111  12234567899999999888764 3579999999999999999887 466677    


Q ss_pred             eeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                             .|+|-...+++- ..|.|+||
T Consensus       300 -----------------------~whp~rp~i~si-~sg~v~iw  319 (405)
T KOG1273|consen  300 -----------------------NWHPVRPIIASI-ASGVVYIW  319 (405)
T ss_pred             -----------------------ccccceeeeeec-cCCceEEE
Confidence                                   889988778777 78999998

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.4e-28  Score=192.14  Aligned_cols=255  Identities=21%  Similarity=0.310  Sum_probs=201.8

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (456)
Q Consensus       147 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i  224 (456)
                      ..|++.|..+...--|++|||++.|++|+|+..+++..  ....+.+|.++|..++|....   -|..|++++.||.|.|
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk---~G~iLAScsYDgkVIi   84 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPK---FGTILASCSYDGKVII   84 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccc---cCcEeeEeecCceEEE
Confidence            46888888888888899999999999999999987663  334689999999999997533   6789999999999999


Q ss_pred             EECCCCe--EEEEecCcCccEEEEEeCCCC---eEEEEeCCCcEEEEECCCC---eEEEEeecCCcceEEEEecCcce--
Q 012799          225 WDVSLRK--CVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQG---KLIRELKGHGHWVNSLALSTEYA--  294 (456)
Q Consensus       225 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~--  294 (456)
                      |.-..++  .......|...|++++|-|.+   .|++++.||.|.+.+.+..   ...+....|.-.+++++|.|...  
T Consensus        85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g  164 (299)
T KOG1332|consen   85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG  164 (299)
T ss_pred             EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence            9988774  234456799999999999976   8899999999999988764   22344567888999999998621  


Q ss_pred             -eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC-CccccccccccEeEEEECCCC
Q 012799          295 -LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPDG  372 (456)
Q Consensus       295 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~sp~~  372 (456)
                       +....                         .......|++|+.|..|+||+.....- ....+.+|.+.|+.++|.|.-
T Consensus       165 ~~~~~~-------------------------~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~  219 (299)
T KOG1332|consen  165 SLVDQG-------------------------PAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSV  219 (299)
T ss_pred             cccccC-------------------------cccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcccc
Confidence             10000                         001135699999999999999776542 233488999999999999953


Q ss_pred             ----CEEEEEECCCcEEEEeCCCC-e--EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEE
Q 012799          373 ----QWVASASFDKSIKLWNGTTG-K--FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL  445 (456)
Q Consensus       373 ----~~l~s~~~dg~i~iwd~~~~-~--~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  445 (456)
                          .+||+++.||++.||..... +  ....++.....++.+                           .||+.|+.|+
T Consensus       220 gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~v---------------------------SWS~sGn~La  272 (299)
T KOG1332|consen  220 GLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRV---------------------------SWSLSGNILA  272 (299)
T ss_pred             CCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEE---------------------------EEeccccEEE
Confidence                46999999999999976531 1  122334456788888                           9999999999


Q ss_pred             EeeCCCceEEC
Q 012799          446 SGSKDSTLKVT  456 (456)
Q Consensus       446 s~s~Dg~v~iW  456 (456)
                      .++.|+.|.+|
T Consensus       273 Vs~GdNkvtlw  283 (299)
T KOG1332|consen  273 VSGGDNKVTLW  283 (299)
T ss_pred             EecCCcEEEEE
Confidence            99999999998

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=2.4e-28  Score=197.32  Aligned_cols=256  Identities=23%  Similarity=0.389  Sum_probs=205.6

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE--EecCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  176 (456)
                      ..+++|..|.+.|+++.|+|....|++|+.|++|++||+..-...+.  ......+|.++.|+|.|.+|+.|....++++
T Consensus       163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl  242 (430)
T KOG0640|consen  163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL  242 (430)
T ss_pred             ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence            46789999999999999999999999999999999999975432221  2235678999999999999999999999999


Q ss_pred             EeCCCCCCcc--ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CcC-ccEEEEEeCCCC
Q 012799          177 WDPQTGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHT-LAVTCVKWGGDG  252 (456)
Q Consensus       177 wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~~v~~~~~~~~~  252 (456)
                      ||+++-++..  ....+|.+.|+++.+++     .+++.++|+.||.|++||--+++|+.++. .|. ..|.+..|..++
T Consensus       243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~-----t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~  317 (430)
T KOG0640|consen  243 YDVNTYQCFVSANPDDQHTGAITQVRYSS-----TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG  317 (430)
T ss_pred             EeccceeEeeecCcccccccceeEEEecC-----CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC
Confidence            9999887532  34567999999999999     89999999999999999999999998884 454 568899999999


Q ss_pred             -eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799          253 -VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (456)
Q Consensus       253 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (456)
                       ++++.+.|..+++|.+.+++.+..+.+.+..-..                               ..+...++....++
T Consensus       318 kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq-------------------------------~~rtqAvFNhtEdy  366 (430)
T KOG0640|consen  318 KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ-------------------------------KHRTQAVFNHTEDY  366 (430)
T ss_pred             eEEeecCCcceeeeeeecCCceEEEEecCCcccch-------------------------------hhhhhhhhcCccce
Confidence             9999999999999999999999988764221000                               00001111112334


Q ss_pred             EEEEe-CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          332 LVSGS-DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       332 l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                      ++.-. ..+.+.-||.++.......-.+|.+.++.+.-||.+.-+++|+.|-.+++|--+
T Consensus       367 Vl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  367 VLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             EEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence            44433 356788999888776666667999999999999999999999999999999643

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7.9e-27  Score=214.24  Aligned_cols=255  Identities=18%  Similarity=0.288  Sum_probs=209.2

Q ss_pred             cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC-cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 012799          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  183 (456)
                      .+|+..-+.++|.|+|++|.+++.||.|++|+.... +...++.-+...|.+++-  ++.+|++|+.+++|.+|.+.+++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence            479999999999999999999999999999998765 333444337778888876  55699999999999999999887


Q ss_pred             CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCc
Q 012799          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT  262 (456)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~  262 (456)
                      .-. .+....-++..++|+.     +|++++.||.|-.|++.+.........+++|.++|.++.++|++ .|++.+.||.
T Consensus        88 ~~~-iL~Rftlp~r~~~v~g-----~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~  161 (933)
T KOG1274|consen   88 EDT-ILARFTLPIRDLAVSG-----SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK  161 (933)
T ss_pred             ccc-eeeeeeccceEEEEec-----CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence            654 5666778899999987     99999999999999999999999999999999999999999999 8999999999


Q ss_pred             EEEEECCCCeEEEEeecC--------CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          263 IKVWETTQGKLIRELKGH--------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       263 i~iwd~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      |++||+.++....++.+-        ...+..++|+|+                                    +..++.
T Consensus       162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk------------------------------------~g~la~  205 (933)
T KOG1274|consen  162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK------------------------------------GGTLAV  205 (933)
T ss_pred             EEEEEcccchhhhhcccCCccccccccceeeeeeecCC------------------------------------CCeEEe
Confidence            999999998776665431        344567888887                                    556888


Q ss_pred             EeCCCcEEEEecCCCCCCcccc--ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          335 GSDDFTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      .+.|+.|.+|+.... .....+  ..+...+.+++|+|+|+|||+++.||.|.|||..+-+.    ......|.++
T Consensus       206 ~~~d~~Vkvy~r~~w-e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~  276 (933)
T KOG1274|consen  206 PPVDNTVKVYSRKGW-ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCE  276 (933)
T ss_pred             eccCCeEEEEccCCc-eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEE
Confidence            899999999995443 333333  23344599999999999999999999999999987221    2233467777

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.7e-26  Score=177.39  Aligned_cols=244  Identities=25%  Similarity=0.386  Sum_probs=204.6

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-----ceeEEecCCCCEEEEEEcCC----CCEEEEEeC-CC
Q 012799          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHKNWVLCIAWSAD----GKHLVSGSK-AG  172 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~-dg  172 (456)
                      .-+.|.+.|+|.+|+|+|+++|+|+.|++|++..++...     .-..+.-|.+.|..++|-.+    +..|++++. |.
T Consensus        84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc  163 (350)
T KOG0641|consen   84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC  163 (350)
T ss_pred             eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence            346799999999999999999999999999998665432     23456679999999999753    456776553 66


Q ss_pred             eEEEEeCCCCCCccccccCcccceEEEE-ecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC--c-----CccEE
Q 012799          173 ELQCWDPQTGKPSGNPLSGHKKWITGIS-WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--H-----TLAVT  244 (456)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~-----~~~v~  244 (456)
                      .|.+-|...|+... .+.+|.+.|.++- |       ++-+|++|+.|.+|++||++-..++..+..  |     ...|.
T Consensus       164 ~iy~tdc~~g~~~~-a~sghtghilalysw-------n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessava  235 (350)
T KOG0641|consen  164 KIYITDCGRGQGFH-ALSGHTGHILALYSW-------NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVA  235 (350)
T ss_pred             eEEEeecCCCCcce-eecCCcccEEEEEEe-------cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeE
Confidence            78888888888765 6889999998873 4       567999999999999999999888887632  2     36799


Q ss_pred             EEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799          245 CVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (456)
Q Consensus       245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (456)
                      ++++.|.| .|++|-.|....+||++.++.++.+..|...|.++.|+|.                               
T Consensus       236 av~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~-------------------------------  284 (350)
T KOG0641|consen  236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPG-------------------------------  284 (350)
T ss_pred             EEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCC-------------------------------
Confidence            99999999 8888999999999999999999999999999999999997                               


Q ss_pred             ccCCCCCEEEEEeCCCcEEEEecCCC---CCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          324 IKGNAPERLVSGSDDFTMFLWEPAVS---KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       324 ~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                           ..++++++.|..|++-|+...   +.+......|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus       285 -----a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  285 -----AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             -----ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence                 566999999999999997543   23445566889999999999988889999999999999763

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.2e-27  Score=188.97  Aligned_cols=246  Identities=17%  Similarity=0.295  Sum_probs=192.1

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc---cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEE
Q 012799          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (456)
Q Consensus       147 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~  223 (456)
                      .+|.+-|.++.|.+.|+.+|+|+.|++++|||.++....   ......|.+.|..+.|.+..   -|+.+++++.|+++.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPE---fGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPE---FGQVVATCSYDRTVS   86 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcc---ccceEEEEecCCcee
Confidence            368899999999999999999999999999997654322   12467899999999998855   678999999999999


Q ss_pred             EEECC---------CCeEEEEecCcCccEEEEEeCCCC---eEEEEeCCCcEEEEECCCCe------EEEEee-------
Q 012799          224 IWDVS---------LRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQGK------LIRELK-------  278 (456)
Q Consensus       224 iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~------~~~~~~-------  278 (456)
                      ||.-.         ......++......|+++.|.|..   .+++++.||.+|||+.....      +..+++       
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            99752         122345566678899999999964   89999999999999875432      222222       


Q ss_pred             cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC-----CcEEEEecCCCC---
Q 012799          279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD-----FTMFLWEPAVSK---  350 (456)
Q Consensus       279 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~---  350 (456)
                      .+..+..|+.|++...                                 ...+|+.|+.+     +.++||......   
T Consensus       167 ~~~~~~~CvsWn~sr~---------------------------------~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw  213 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRM---------------------------------HEPLIAVGSDEDAPHLNKVKIYEYNENGRKW  213 (361)
T ss_pred             cccCcceEEeeccccc---------------------------------cCceEEEEcccCCccccceEEEEecCCccee
Confidence            2445667777776422                                 14457777766     478888755443   


Q ss_pred             CCccccccccccEeEEEECCC----CCEEEEEECCCcEEEEeCCC--------------------CeEEEEEecccccEE
Q 012799          351 QPKTRMTGHQQLVNHVYFSPD----GQWVASASFDKSIKLWNGTT--------------------GKFVAVFRGHVGPVY  406 (456)
Q Consensus       351 ~~~~~~~~~~~~v~~~~~sp~----~~~l~s~~~dg~i~iwd~~~--------------------~~~~~~~~~~~~~v~  406 (456)
                      ..+..+.+|..+|++++|.|+    -.+||+++.|| |+||.++.                    -+.+..+..|.+.|+
T Consensus       214 ~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VW  292 (361)
T KOG2445|consen  214 LKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVW  292 (361)
T ss_pred             eeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceE
Confidence            234456799999999999995    34699999999 99999873                    123556778999999


Q ss_pred             EEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       407 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .+                           .|+-.|..|++.|.||.||+|
T Consensus       293 rv---------------------------~wNmtGtiLsStGdDG~VRLW  315 (361)
T KOG2445|consen  293 RV---------------------------RWNMTGTILSSTGDDGCVRLW  315 (361)
T ss_pred             EE---------------------------EEeeeeeEEeecCCCceeeeh
Confidence            99                           889999999999999999999

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5.3e-27  Score=188.91  Aligned_cols=240  Identities=18%  Similarity=0.260  Sum_probs=193.8

Q ss_pred             cCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEE
Q 012799          148 GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW  225 (456)
Q Consensus       148 ~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  225 (456)
                      ...+.|.+++||| ...++++++.||+||+|+++. |....+....|.++|.+++|+.     +|..+++|+.|+.+++|
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-----dgskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-----DGSKVFSGGCDKQAKLW   99 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-----CCceEEeeccCCceEEE
Confidence            4678899999999 566777999999999999987 5666667788999999999999     99999999999999999


Q ss_pred             ECCCCeEEEEecCcCccEEEEEeCCCC---eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccC
Q 012799          226 DVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (456)
Q Consensus       226 d~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  302 (456)
                      |+.+++ ...+..|.++|.++.|-+..   .|++|+.|.+|+.||.+...++.++.. ...+.++..-            
T Consensus       100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~------------  165 (347)
T KOG0647|consen  100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL------------  165 (347)
T ss_pred             EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc------------
Confidence            999995 55667899999999998754   789999999999999999988888874 3445554432            


Q ss_pred             CCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc-ccccccEeEEEECCCCCEEEEEECC
Q 012799          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFD  381 (456)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~~~d  381 (456)
                                                ...++.+..++.|.+|++++........ ....-.++|++..+|....+.|+-+
T Consensus       166 --------------------------~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE  219 (347)
T KOG0647|consen  166 --------------------------YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE  219 (347)
T ss_pred             --------------------------CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence                                      2348889999999999987655433322 2234468899998888888999999


Q ss_pred             CcEEEEeCCCC--eEEEEEecccc------cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799          382 KSIKLWNGTTG--KFVAVFRGHVG------PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL  453 (456)
Q Consensus       382 g~i~iwd~~~~--~~~~~~~~~~~------~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v  453 (456)
                      |.+.|..+..+  +.-.+|+.|..      .|+.                        ++.++|+|.-..|+|+|.||+.
T Consensus       220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa------------------------VNsi~FhP~hgtlvTaGsDGtf  275 (347)
T KOG0647|consen  220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA------------------------VNSIAFHPVHGTLVTAGSDGTF  275 (347)
T ss_pred             ceEEEEecCCCCccCceeEEEeccCCCCCCceEE------------------------ecceEeecccceEEEecCCceE
Confidence            99999999887  44556676653      1222                        2344999999999999999999


Q ss_pred             EEC
Q 012799          454 KVT  456 (456)
Q Consensus       454 ~iW  456 (456)
                      .+|
T Consensus       276 ~FW  278 (347)
T KOG0647|consen  276 SFW  278 (347)
T ss_pred             EEe
Confidence            998

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=2e-27  Score=211.54  Aligned_cols=240  Identities=30%  Similarity=0.465  Sum_probs=209.1

Q ss_pred             cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc-ccccCcccceEE-EEecccccCCCCCEEEEEeC
Q 012799          141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITG-ISWEPVHLNAPCRRFVSASK  218 (456)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~-~~~~~~~~~~~~~~l~~~~~  218 (456)
                      +..+.+.+|...|..+++.+ +..++++++||++++|+-..++... ..+.+|.+.|.. ++|.+ .   ++..+++|+.
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~---~~~~l~~g~~   79 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-S---DKGRLVVGGM   79 (745)
T ss_pred             eeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-c---cCcceEeecc
Confidence            34567889999999988764 4489999999999999987766554 345667777776 77766 2   5667999999


Q ss_pred             CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeec
Q 012799          219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG  298 (456)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  298 (456)
                      |+.|.+|...+..++..+++|...|.|++...++.+++|+.|.++++|-.  +++...+.+|...|.++..-|+.     
T Consensus        80 D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-----  152 (745)
T KOG0301|consen   80 DTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-----  152 (745)
T ss_pred             cceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-----
Confidence            99999999999999999999999999999888889999999999999965  56777799999999999988762     


Q ss_pred             cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE
Q 012799          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA  378 (456)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  378 (456)
                                                      .+++|+.|.+|++|.   +......+.+|.+.|+.+++-+++. ++++
T Consensus       153 --------------------------------~~vTgsaDKtIklWk---~~~~l~tf~gHtD~VRgL~vl~~~~-flSc  196 (745)
T KOG0301|consen  153 --------------------------------TYVTGSADKTIKLWK---GGTLLKTFSGHTDCVRGLAVLDDSH-FLSC  196 (745)
T ss_pred             --------------------------------cEEeccCcceeeecc---CCchhhhhccchhheeeeEEecCCC-eEee
Confidence                                            589999999999997   3567778999999999999998754 7899


Q ss_pred             ECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       379 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +.||.|++|++ +|+.+..+.+|+.-|+++                           +...++..++++|+|++++||
T Consensus       197 sNDg~Ir~w~~-~ge~l~~~~ghtn~vYsi---------------------------s~~~~~~~Ivs~gEDrtlriW  246 (745)
T KOG0301|consen  197 SNDGSIRLWDL-DGEVLLEMHGHTNFVYSI---------------------------SMALSDGLIVSTGEDRTLRIW  246 (745)
T ss_pred             cCCceEEEEec-cCceeeeeeccceEEEEE---------------------------EecCCCCeEEEecCCceEEEe
Confidence            99999999998 899999999999999999                           667888999999999999999

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.8e-26  Score=186.35  Aligned_cols=250  Identities=20%  Similarity=0.382  Sum_probs=196.3

Q ss_pred             cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc----ceeEEecCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 012799          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWD  178 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd  178 (456)
                      .+|.+-|.++.|.+.|+.+|+|+.|++|+|||.++..    .....+.|.+.|..+.|.+  -|+.+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            4799999999999999999999999999999975443    4455678999999999986  589999999999999997


Q ss_pred             CCCCCC--------ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe------EEEEec-------
Q 012799          179 PQTGKP--------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK------CVICLS-------  237 (456)
Q Consensus       179 ~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~-------  237 (456)
                      -.....        ....+......|+++.|.|.+   -|-.+++++.||.++||+....-      ....+.       
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h---lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH---LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchh---cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            532111        122455667889999999977   56799999999999999865332      222222       


Q ss_pred             CcCccEEEEEeCCCC----eEEEEeCC-----CcEEEEECCCC----eEEEEeecCCcceEEEEecCcceeeeccccCCC
Q 012799          238 GHTLAVTCVKWGGDG----VIYTGSQD-----CTIKVWETTQG----KLIRELKGHGHWVNSLALSTEYALRTGAFDHTG  304 (456)
Q Consensus       238 ~~~~~v~~~~~~~~~----~l~~~~~d-----g~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  304 (456)
                      .+..+..|+.|++..    .|++|+.+     +.++||....+    ..+.++.+|..+|+.++|.|+..          
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G----------  236 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG----------  236 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC----------
Confidence            466778899999854    67777665     47888876543    24556778999999999999731          


Q ss_pred             CccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-------------------CCccccccccccEeE
Q 012799          305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-------------------QPKTRMTGHQQLVNH  365 (456)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------------~~~~~~~~~~~~v~~  365 (456)
                                            ..-..|++++.|| |+||.+....                   ..+..+..|.+.|..
T Consensus       237 ----------------------r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr  293 (361)
T KOG2445|consen  237 ----------------------RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR  293 (361)
T ss_pred             ----------------------CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE
Confidence                                  1245699999999 9999976311                   122345689999999


Q ss_pred             EEECCCCCEEEEEECCCcEEEEeCC
Q 012799          366 VYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       366 ~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                      +.|+-.|..|++.|.||.||+|...
T Consensus       294 v~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  294 VRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEEeeeeeEEeecCCCceeeehhhh
Confidence            9999999999999999999999754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.2e-26  Score=197.60  Aligned_cols=261  Identities=22%  Similarity=0.287  Sum_probs=207.7

Q ss_pred             EECC-CcEEEEeCCCCcceeEEecC-CCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCCccccccCcccceEEEEec
Q 012799          126 GSGD-TTVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGKPSGNPLSGHKKWITGISWE  202 (456)
Q Consensus       126 ~~~d-~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~  202 (456)
                      ++.| .++.+||+.+|....++++. ...-.++..- .+.+++++.. ...+.+|.+....... ...--.+.|.+++-+
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~   90 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASS   90 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecC
Confidence            3444 45999999999998888765 2222222222 3356666654 4479999987655443 233346778999988


Q ss_pred             ccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECC---------CCe
Q 012799          203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT---------QGK  272 (456)
Q Consensus       203 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~---------~~~  272 (456)
                      |     +|.+++.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.|| +|++|+.||.|.+|++.         +-+
T Consensus        91 n-----~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~  165 (476)
T KOG0646|consen   91 N-----LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK  165 (476)
T ss_pred             C-----CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence            8     88888888899999999999999999999999999999999999 99999999999999863         346


Q ss_pred             EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC
Q 012799          273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP  352 (456)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  352 (456)
                      ++..+..|.-+|+++...+.+                                  ...++++++.|.++++||+..+...
T Consensus       166 p~~~f~~HtlsITDl~ig~Gg----------------------------------~~~rl~TaS~D~t~k~wdlS~g~LL  211 (476)
T KOG0646|consen  166 PLHIFSDHTLSITDLQIGSGG----------------------------------TNARLYTASEDRTIKLWDLSLGVLL  211 (476)
T ss_pred             ceeeeccCcceeEEEEecCCC----------------------------------ccceEEEecCCceEEEEEeccceee
Confidence            788888999999999887653                                  2456999999999999998877544


Q ss_pred             ccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC----------------CeEEEEEecccc--cEEEEEeeeee
Q 012799          353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----------------GKFVAVFRGHVG--PVYQIRFELIY  414 (456)
Q Consensus       353 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~--~v~~i~~~~~~  414 (456)
                      ....  ....+.+++.+|.++.++.|+.+|.|.+.++..                +..+..+.+|.+  +|+++      
T Consensus       212 lti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL------  283 (476)
T KOG0646|consen  212 LTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL------  283 (476)
T ss_pred             EEEe--cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE------
Confidence            4333  356799999999999999999999999987653                233456667777  77777      


Q ss_pred             eecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                           +.+-||..|++|+.||.|+||
T Consensus       284 ---------------------ais~DgtlLlSGd~dg~VcvW  304 (476)
T KOG0646|consen  284 ---------------------AISTDGTLLLSGDEDGKVCVW  304 (476)
T ss_pred             ---------------------EEecCccEEEeeCCCCCEEEE
Confidence                                 889999999999999999999

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=3.8e-27  Score=202.84  Aligned_cols=241  Identities=23%  Similarity=0.341  Sum_probs=186.2

Q ss_pred             cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc----cccccCcccceEEEEecccccCCCCCEEEEE
Q 012799          141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS----GNPLSGHKKWITGISWEPVHLNAPCRRFVSA  216 (456)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~  216 (456)
                      .....+.+|...|.++++.|.|-.|++|+.|..|++||+......    ..+.......|.++.|++     .|..|++.
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-----Tg~~iLvv  232 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-----TGDQILVV  232 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-----CCCeEEEE
Confidence            344567789999999999999999999999999999999755432    223344556799999999     88899999


Q ss_pred             eCCCcEEEEECCCCeEEE------------EecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeE-EEEee---
Q 012799          217 SKDGDARIWDVSLRKCVI------------CLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKL-IRELK---  278 (456)
Q Consensus       217 ~~dg~i~iwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~-~~~~~---  278 (456)
                      +.....+++|-...+...            ..++|...++|.+|+|..  .+++++.||++++||+...+. .+.+.   
T Consensus       233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence            998999999965443322            235789999999999977  899999999999999976542 22332   


Q ss_pred             --cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC--CCcc
Q 012799          279 --GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK--QPKT  354 (456)
Q Consensus       279 --~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~  354 (456)
                        +..-++++.+|+++                                    +..|++|+.||.|.+|+.....  ....
T Consensus       313 ~~g~Rv~~tsC~~nrd------------------------------------g~~iAagc~DGSIQ~W~~~~~~v~p~~~  356 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRD------------------------------------GKLIAAGCLDGSIQIWDKGSRTVRPVMK  356 (641)
T ss_pred             CCCcccCceeeecCCC------------------------------------cchhhhcccCCceeeeecCCcccccceE
Confidence              23446788889988                                    5569999999999999964322  2223


Q ss_pred             ccccccc--cEeEEEECCCCCEEEEEECCCcEEEEeCCCC-eEEEEEecccc--cEEEEEeeeeeeecCCCCceeeeccc
Q 012799          355 RMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVG--PVYQIRFELIYCFRYPSNFYCVVDMS  429 (456)
Q Consensus       355 ~~~~~~~--~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~--~v~~i~~~~~~~~~~~~~~~~~~~~~  429 (456)
                      .-.+|..  .|+|+.||+||++|++-+.|+++++||++.. +++.+..+-..  +-+.+                     
T Consensus       357 vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc---------------------  415 (641)
T KOG0772|consen  357 VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDC---------------------  415 (641)
T ss_pred             eeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCcc---------------------
Confidence            3456776  8999999999999999999999999999874 44554443222  22333                     


Q ss_pred             ccccceeEecCCCeEEEeeC
Q 012799          430 CCMSLYSWSADSRLLLSGSK  449 (456)
Q Consensus       430 ~~~~~~~~s~dg~~l~s~s~  449 (456)
                            +|||+.++|++|..
T Consensus       416 ------~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  416 ------CFSPDDKLILTGTS  429 (641)
T ss_pred             ------ccCCCceEEEeccc
Confidence                  89999999999864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.6e-27  Score=213.40  Aligned_cols=278  Identities=19%  Similarity=0.307  Sum_probs=218.3

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce----eEEe---cCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM----FKCT---GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~----~~~~---~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~  180 (456)
                      ....+|+.+++-..++.++.. .++||.+......    ....   .-...+..+.|+. +.++||+++..|.|.+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            345667778888888887654 6888877543211    1111   1122455678875 67899999999999999998


Q ss_pred             C--CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEE
Q 012799          181 T--GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYT  256 (456)
Q Consensus       181 ~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~  256 (456)
                      .  .+.....+..|...+.++.|++.+    ..+|++|+.||.|++||++..+...++.+....|+++.|+|..  .|++
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~te----p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s  194 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTE----PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFAS  194 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCC----ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEE
Confidence            7  233333688999999999999864    3589999999999999999999988898888999999999854  9999


Q ss_pred             EeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799          257 GSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (456)
Q Consensus       257 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (456)
                      +...|.+++||+|.. ++...+..|.++|.++.|+|+                                    +.+|++|
T Consensus       195 ~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn------------------------------------r~~lATG  238 (839)
T KOG0269|consen  195 IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN------------------------------------REWLATG  238 (839)
T ss_pred             ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC------------------------------------Cceeeec
Confidence            999999999999975 456778899999999999998                                    6679999


Q ss_pred             eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCE-EEEEE--CCCcEEEEeCCCCe-EEEEEecccccEEEEEee
Q 012799          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW-VASAS--FDKSIKLWNGTTGK-FVAVFRGHVGPVYQIRFE  411 (456)
Q Consensus       336 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~--~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~  411 (456)
                      +.|+.|+|||................+|.++.|-|...+ ||+++  .|-.|+|||++..- +..++..|...++.+   
T Consensus       239 GRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i---  315 (839)
T KOG0269|consen  239 GRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI---  315 (839)
T ss_pred             CCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce---
Confidence            999999999977554333333344578999999997665 77765  56789999998743 466888999999999   


Q ss_pred             eeeeecCCCCceeeecccccccceeEec-CCCeEEEeeCCCceE
Q 012799          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLK  454 (456)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~s~s~Dg~v~  454 (456)
                                              +|-. |-..|.+++.||+|.
T Consensus       316 ------------------------~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  316 ------------------------AWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             ------------------------eccCCCceeeEeecCccHHH
Confidence                                    5543 456788888888763

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.8e-27  Score=195.08  Aligned_cols=261  Identities=18%  Similarity=0.312  Sum_probs=210.6

Q ss_pred             cceEEEeecc--cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE
Q 012799           89 QAVFRIRPVN--RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV  166 (456)
Q Consensus        89 ~~~~~~~~~~--~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  166 (456)
                      +..+++|...  .|..++..|.+.|..|++..  ..+++++.|++|+.|.++. .+..++. ....+..+.-+..+..++
T Consensus        88 DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~til-g~s~~~gIdh~~~~~~Fa  163 (433)
T KOG0268|consen   88 DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTIL-GKSVYLGIDHHRKNSVFA  163 (433)
T ss_pred             CceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeee-cccccccccccccccccc
Confidence            4556777654  48899999999999999987  6688999999999999875 4666665 445677777777788899


Q ss_pred             EEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEE
Q 012799          167 SGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV  246 (456)
Q Consensus       167 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  246 (456)
                      |||.  .|.|||.+...++. .+.-....|.++.|+|..    ...|++++.|+.|.+||+++++++..+. -...-+.+
T Consensus       164 TcGe--~i~IWD~~R~~Pv~-smswG~Dti~svkfNpvE----TsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~I  235 (433)
T KOG0268|consen  164 TCGE--QIDIWDEQRDNPVS-SMSWGADSISSVKFNPVE----TSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTI  235 (433)
T ss_pred             ccCc--eeeecccccCCccc-eeecCCCceeEEecCCCc----chheeeeccCCceEEEecccCCccceee-eeccccce
Confidence            9886  59999998877766 344445678999999963    3578888899999999999998877664 24456789


Q ss_pred             EeCCCC-eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799          247 KWGGDG-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (456)
Q Consensus       247 ~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (456)
                      +|+|++ .+++|..|..++.||++.- .++....+|.+.|.++.|+|.                                
T Consensus       236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt--------------------------------  283 (433)
T KOG0268|consen  236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT--------------------------------  283 (433)
T ss_pred             ecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC--------------------------------
Confidence            999977 8999999999999999874 567788899999999999998                                


Q ss_pred             cCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE
Q 012799          325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV  397 (456)
Q Consensus       325 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  397 (456)
                          |+-+++|+.|.+|+||..+.+...-......-..|.++.||.|.+|+++||.|+.|++|.....+.+..
T Consensus       284 ----G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv  352 (433)
T KOG0268|consen  284 ----GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGV  352 (433)
T ss_pred             ----cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence                556999999999999997765543332333345699999999999999999999999999776554443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=2.3e-25  Score=202.51  Aligned_cols=338  Identities=18%  Similarity=0.233  Sum_probs=244.7

Q ss_pred             EEEEEECCC--CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          111 VLSVAFSPD--GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       111 V~~~~~s~~--~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      |+++. +|.  -+.++.|+.+|.+.+|++++++.+.+++++...|+++.-+|-=..++.|..+|+|.+++++.++.+. .
T Consensus       162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~-s  239 (910)
T KOG1539|consen  162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM-S  239 (910)
T ss_pred             eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE-E
Confidence            77664 443  2568899999999999999999999999999999999999988899999999999999999998875 2


Q ss_pred             ccCcccceEEEEecccccCCCCC-EEEEEeCCCcEEEEECCCCeEEEEec-CcCccEEEEEeCCCC-eEEEEeCCCcEEE
Q 012799          189 LSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQDCTIKV  265 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~dg~i~i  265 (456)
                      +....+.|++++|..     ||. .+++|+..|.+.+||++..+.+..+. .|.+.|....|.+.. .+++++.|+.+++
T Consensus       240 Fk~d~g~VtslSFrt-----DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~  314 (910)
T KOG1539|consen  240 FKQDWGRVTSLSFRT-----DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKV  314 (910)
T ss_pred             EEccccceeEEEecc-----CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeE
Confidence            332258999999987     665 45666677999999999988877765 788999999999877 9999999999888


Q ss_pred             EECCCC----eEEEEeecCCcceEEEEecCcc--eeeeccccCCCCccCChHHHHHHHHhh-------------------
Q 012799          266 WETTQG----KLIRELKGHGHWVNSLALSTEY--ALRTGAFDHTGKQYSSPEEMKKAALER-------------------  320 (456)
Q Consensus       266 wd~~~~----~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  320 (456)
                      |=..++    +.++.-.+|..+..++.+....  .+.+...+...+.+....+........                   
T Consensus       315 ~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k  394 (910)
T KOG1539|consen  315 WVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLK  394 (910)
T ss_pred             EEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhc
Confidence            855543    4456667788888888876332  233333343333322221111111000                   


Q ss_pred             ---------------------------------------------------------hhhccCCCCCEEEEEeCCCcEEE
Q 012799          321 ---------------------------------------------------------YNKIKGNAPERLVSGSDDFTMFL  343 (456)
Q Consensus       321 ---------------------------------------------------------~~~~~~~~~~~l~~~~~dg~i~i  343 (456)
                                                                               ........|++.+.|...|.|-+
T Consensus       395 ~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~  474 (910)
T KOG1539|consen  395 LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDR  474 (910)
T ss_pred             CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEE
Confidence                                                                     00013455777888999999999


Q ss_pred             EecCCCCCCccc--cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeee---eeeecC
Q 012799          344 WEPAVSKQPKTR--MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL---IYCFRY  418 (456)
Q Consensus       344 wd~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~---~~~~~~  418 (456)
                      |++..+-.....  -..|..+|+.++...-++.+++++.+|.+++||.+...++..++. ..++..+.+..   ......
T Consensus       475 fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~  553 (910)
T KOG1539|consen  475 FNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIAL  553 (910)
T ss_pred             EEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhc
Confidence            997765433322  258999999999999899999999999999999988876666552 22233332221   111222


Q ss_pred             CCCceeeec------------ccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          419 PSNFYCVVD------------MSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       419 ~~~~~~~~~------------~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ....+.+.|            ....++.++|||||++|++++.|++||+|
T Consensus       554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~w  603 (910)
T KOG1539|consen  554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTW  603 (910)
T ss_pred             CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence            222222222            23446677999999999999999999999

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1e-27  Score=216.01  Aligned_cols=242  Identities=20%  Similarity=0.367  Sum_probs=202.5

Q ss_pred             cEEEEEECC-CCCeEEEEECCCcEEEEeCCC---CcceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCC
Q 012799          110 AVLSVAFSP-DGRQLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKP  184 (456)
Q Consensus       110 ~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~  184 (456)
                      .+..+.|+. +.++|||++..|.|.+||+..   .+.+..+..|+..+.++.|++ ...+|++|+.||+|++||++..+.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            345667774 467999999999999999987   566677889999999999998 567899999999999999998876


Q ss_pred             ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCCCC-eEEEEeCCCc
Q 012799          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT  262 (456)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~  262 (456)
                      .. ...+....|..+.|+|.    .+..|+++...|.+++||++.. ++...+.+|.++|.|+.|+|++ +|++|+.|++
T Consensus       169 ~~-t~~~nSESiRDV~fsp~----~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~  243 (839)
T KOG0269|consen  169 KS-TFRSNSESIRDVKFSPG----YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM  243 (839)
T ss_pred             cc-cccccchhhhceeeccC----CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc
Confidence            65 56667888999999995    5789999999999999999865 5667788999999999999988 9999999999


Q ss_pred             EEEEECCCCeEE--EEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe--CC
Q 012799          263 IKVWETTQGKLI--RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS--DD  338 (456)
Q Consensus       263 i~iwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d  338 (456)
                      |+|||..+++..  .++. ...++..+.|-|...                                   ..|++++  .|
T Consensus       244 vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~-----------------------------------~hLAtcsmv~d  287 (839)
T KOG0269|consen  244 VKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARS-----------------------------------YHLATCSMVVD  287 (839)
T ss_pred             EEEEeccCCCccceeEEe-ecceeeeeeeccCcc-----------------------------------chhhhhhcccc
Confidence            999999866543  3333 457899999999843                                   3466655  47


Q ss_pred             CcEEEEecCCCCCCccccccccccEeEEEECC-CCCEEEEEECCCcEEEEeCCCC
Q 012799          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       339 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~  392 (456)
                      -.|+|||++..-.+...+..|...++.++|.. |...+.+++.||.|..-.++++
T Consensus       288 tsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  288 TSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            78999999999999999999999999999976 4556889999998876655544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=1.7e-25  Score=190.09  Aligned_cols=286  Identities=19%  Similarity=0.285  Sum_probs=216.5

Q ss_pred             ccccCCcccEEEEEECCCC--CeEEEEECCCcEEEEeCCCCc----ceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeE
Q 012799          102 ATIAGHTEAVLSVAFSPDG--RQLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGEL  174 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~--~~l~~~~~d~~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i  174 (456)
                      ...+-|.+.|++++|+|..  +++|+|..-|.|-+||+.+.+    .+..+..|..+|.++.|+| +...+++.+.||+|
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti  259 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI  259 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence            3456689999999999964  588999999999999995332    3456678999999999999 56789999999999


Q ss_pred             EEEeCCCCCCccccccC--cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE-EEEecCcCccEEEEEeCCC
Q 012799          175 QCWDPQTGKPSGNPLSG--HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWGGD  251 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~  251 (456)
                      ++-|++.+.... .+..  .......+.|+.     +...+++++.=|...+||.+++.. ...+.-|...|..++++|.
T Consensus       260 R~~D~~~~i~e~-v~s~~~d~~~fs~~d~~~-----e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~  333 (498)
T KOG4328|consen  260 RLQDFEGNISEE-VLSLDTDNIWFSSLDFSA-----ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV  333 (498)
T ss_pred             eeeeecchhhHH-HhhcCccceeeeeccccC-----CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence            999998765322 2222  333445555554     667778888878999999998665 5566778889999999997


Q ss_pred             C--eEEEEeCCCcEEEEECCCCeE----EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhcc
Q 012799          252 G--VIYTGSQDCTIKVWETTQGKL----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (456)
Q Consensus       252 ~--~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (456)
                      .  .+++++.|++.+|||++.-..    +.....|...|.+..|+|.                                 
T Consensus       334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs---------------------------------  380 (498)
T KOG4328|consen  334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS---------------------------------  380 (498)
T ss_pred             CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC---------------------------------
Confidence            7  899999999999999986432    2233458899999999998                                 


Q ss_pred             CCCCCEEEEEeCCCcEEEEecC---CCCCCcccccccc----c--cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEE
Q 012799          326 GNAPERLVSGSDDFTMFLWEPA---VSKQPKTRMTGHQ----Q--LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA  396 (456)
Q Consensus       326 ~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~----~--~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~  396 (456)
                         +..|++.+.|..|+|||..   ....+...+ .|.    .  ......|.|+..++++|-.-..|-|+|-..++.+.
T Consensus       381 ---~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~  456 (498)
T KOG4328|consen  381 ---GGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVC  456 (498)
T ss_pred             ---CCceEeeccCCceEEeecccccccCCcccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEee
Confidence               3349999999999999963   222222222 222    1  23456899999999999999999999998888877


Q ss_pred             EEecccc-cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEeeCCCceEEC
Q 012799          397 VFRGHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVT  456 (456)
Q Consensus       397 ~~~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s~Dg~v~iW  456 (456)
                      .+..... .|.++.                          .|+|-+. +++.++..|.|+||
T Consensus       457 el~~P~~~tI~~vn--------------------------~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  457 ELHDPESSTIPSVN--------------------------EFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             eccCccccccccce--------------------------eecccccceeccCCccceEEEE
Confidence            7654433 455441                          7899988 44455568888887

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=9.3e-25  Score=176.70  Aligned_cols=233  Identities=18%  Similarity=0.284  Sum_probs=189.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  228 (456)
                      ....|..+.|+|.++.|++++.||++++||.......  ....|..++.+++|.+      ...+++|+.||.|+.+|++
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--~~~~~~~plL~c~F~d------~~~~~~G~~dg~vr~~Dln   83 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--LKFKHGAPLLDCAFAD------ESTIVTGGLDGQVRRYDLN   83 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--hheecCCceeeeeccC------CceEEEeccCceEEEEEec
Confidence            4678999999999999999999999999999887544  4567899999999975      4589999999999999999


Q ss_pred             CCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCcc
Q 012799          229 LRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY  307 (456)
Q Consensus       229 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  307 (456)
                      ++.... +..|..+|.|+.+.+.. .+++|+.|++|++||.+.......+.. ...|.++...                 
T Consensus        84 ~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~-----------------  144 (323)
T KOG1036|consen   84 TGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS-----------------  144 (323)
T ss_pred             CCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc-----------------
Confidence            887544 45699999999999744 999999999999999997555555543 3367777765                 


Q ss_pred             CChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc-cccccccEeEEEECCCCCEEEEEECCCcEEE
Q 012799          308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSPDGQWVASASFDKSIKL  386 (456)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i  386 (456)
                                           ++.|+.|+.+..+.+||+++...+.+. ...-...++++++-|++.=.+.++-||+|.+
T Consensus       145 ---------------------g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav  203 (323)
T KOG1036|consen  145 ---------------------GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV  203 (323)
T ss_pred             ---------------------CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence                                 456999999999999999987665432 2344567999999998877899999999888


Q ss_pred             EeCCCC----eEEEEEecccc---------cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799          387 WNGTTG----KFVAVFRGHVG---------PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL  453 (456)
Q Consensus       387 wd~~~~----~~~~~~~~~~~---------~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v  453 (456)
                      =.+...    +.-..|+.|..         ||+++                           +|+|--..|+|||.||.|
T Consensus       204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai---------------------------~Fhp~~~tfaTgGsDG~V  256 (323)
T KOG1036|consen  204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI---------------------------AFHPIHGTFATGGSDGIV  256 (323)
T ss_pred             EccCCchHHhhhceeEEeeecccCCceEEEEecee---------------------------EeccccceEEecCCCceE
Confidence            766654    44556666653         45555                           999999999999999999


Q ss_pred             EEC
Q 012799          454 KVT  456 (456)
Q Consensus       454 ~iW  456 (456)
                      .+|
T Consensus       257 ~~W  259 (323)
T KOG1036|consen  257 NIW  259 (323)
T ss_pred             EEc
Confidence            999

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=7e-24  Score=189.24  Aligned_cols=262  Identities=18%  Similarity=0.165  Sum_probs=192.6

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCccccccCcccceEE
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG  198 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~  198 (456)
                      ++++++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++.... +..+ ..+..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~-~~~~~   77 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT-LPSG-PDPEL   77 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe-ccCC-CCccE
Confidence            3578899999999999999998888887654 46789999999876 5667889999999998876542 2222 23467


Q ss_pred             EEecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCC-cEEEEECCCCeEEE
Q 012799          199 ISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC-TIKVWETTQGKLIR  275 (456)
Q Consensus       199 ~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg-~i~iwd~~~~~~~~  275 (456)
                      +.|+|     +++.++++ +.++.+++||+.+.+.+..+.. ...+.+++|+|++ .++++..++ .+..||..+++...
T Consensus        78 ~~~~~-----~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~  151 (300)
T TIGR03866        78 FALHP-----NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD  151 (300)
T ss_pred             EEECC-----CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence            78888     77777554 5689999999999887776653 3446889999999 777776664 56778998887766


Q ss_pred             EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE-EEeCCCcEEEEecCCCCCCcc
Q 012799          276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSKQPKT  354 (456)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~  354 (456)
                      .+.. ......++++++                                    +..++ ++..++.|++||+.+..... 
T Consensus       152 ~~~~-~~~~~~~~~s~d------------------------------------g~~l~~~~~~~~~v~i~d~~~~~~~~-  193 (300)
T TIGR03866       152 NVLV-DQRPRFAEFTAD------------------------------------GKELWVSSEIGGTVSVIDVATRKVIK-  193 (300)
T ss_pred             EEEc-CCCccEEEECCC------------------------------------CCEEEEEcCCCCEEEEEEcCcceeee-
Confidence            5542 234566788877                                    44464 44569999999987654322 


Q ss_pred             cccc-----c--cccEeEEEECCCCCEEEE-EECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeee
Q 012799          355 RMTG-----H--QQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV  426 (456)
Q Consensus       355 ~~~~-----~--~~~v~~~~~sp~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~  426 (456)
                      .+..     +  ......++|+|+++++++ .+.++.+.+||+.+++.+..+. +...+.++                  
T Consensus       194 ~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~------------------  254 (300)
T TIGR03866       194 KITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQL------------------  254 (300)
T ss_pred             eeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceE------------------
Confidence            1111     1  112356889999998554 4556789999999988776554 34467777                  


Q ss_pred             cccccccceeEecCCCeEEEe-eCCCceEEC
Q 012799          427 DMSCCMSLYSWSADSRLLLSG-SKDSTLKVT  456 (456)
Q Consensus       427 ~~~~~~~~~~~s~dg~~l~s~-s~Dg~v~iW  456 (456)
                               +|+|+|++|+++ +.+|.|+||
T Consensus       255 ---------~~~~~g~~l~~~~~~~~~i~v~  276 (300)
T TIGR03866       255 ---------AFTPDEKYLLTTNGVSNDVSVI  276 (300)
T ss_pred             ---------EECCCCCEEEEEcCCCCeEEEE
Confidence                     899999999886 569999998

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.7e-27  Score=212.99  Aligned_cols=238  Identities=29%  Similarity=0.484  Sum_probs=213.3

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  181 (456)
                      +.+..|...|.++..-..++.+++|+.|-.+.+|.+..-..+..+.+|..+|.++.|+++..+|++|+.+|+|++||++.
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee  101 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE  101 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence            45667999999999977889999999999999999988888888999999999999999999999999999999999999


Q ss_pred             CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCC
Q 012799          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD  260 (456)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d  260 (456)
                      ++.+. .+.+|...+..+.|+|     -+.+++.|+.|+.+++||++...|...+.+|...+.++.|+|+| +++.++.|
T Consensus       102 Ak~vr-tLtgh~~~~~sv~f~P-----~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed  175 (825)
T KOG0267|consen  102 AKIVR-TLTGHLLNITSVDFHP-----YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGED  175 (825)
T ss_pred             hhhhh-hhhccccCcceeeecc-----ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCc
Confidence            88776 7899999999999999     77899999999999999999999999999999999999999999 88999999


Q ss_pred             CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (456)
Q Consensus       261 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  340 (456)
                      ..+++||+..|+....|..|...+.++.++|...                                    .++.|+.|++
T Consensus       176 ~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~------------------------------------Lla~Gs~d~t  219 (825)
T KOG0267|consen  176 NTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV------------------------------------LLAPGSSDRT  219 (825)
T ss_pred             ceeeeecccccccccccccccccccccccCchhh------------------------------------hhccCCCCce
Confidence            9999999999999999999999999999998743                                    3889999999


Q ss_pred             EEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCC
Q 012799          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK  382 (456)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg  382 (456)
                      +++||+++-.. +.........|.+.+|+|++..+++|....
T Consensus       220 v~f~dletfe~-I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  220 VRFWDLETFEV-ISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeeeccceeEE-eeccCCccCCceeeeecCCceeeecCchhh
Confidence            99999875432 222334467799999999999888886554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=3.9e-24  Score=183.96  Aligned_cols=280  Identities=20%  Similarity=0.340  Sum_probs=215.3

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE---ec-CCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC---TG-HKNWVLCIAWSADGKHLVSGSKAGELQ  175 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~  175 (456)
                      .....+..++.|....|+|.+.-|......+.+.+|+.+++....+.   .. ....|.|++|.++|+ +++|..+|.|.
T Consensus       192 ~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~  270 (626)
T KOG2106|consen  192 KLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNIL  270 (626)
T ss_pred             ccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEE
Confidence            34455567788999999997765665556789999999887654432   22 236799999999886 78999999999


Q ss_pred             EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe------------------------
Q 012799          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK------------------------  231 (456)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------------------  231 (456)
                      ||+..+.+...... .|.+.|.+++...     +| .|++|+.|..|..||-.-.+                        
T Consensus       271 Iw~~~~~~~~k~~~-aH~ggv~~L~~lr-----~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~  343 (626)
T KOG2106|consen  271 IWSKGTNRISKQVH-AHDGGVFSLCMLR-----DG-TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL  343 (626)
T ss_pred             EEeCCCceEEeEee-ecCCceEEEEEec-----Cc-cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence            99998777666555 9999999999876     66 45569999999999832000                        


Q ss_pred             ----------------EEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcce
Q 012799          232 ----------------CVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA  294 (456)
Q Consensus       232 ----------------~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  294 (456)
                                      ......+|......++.+|+. .+++++.|+.+++|+  ..++..+.. -..+..++.|+|.  
T Consensus       344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhps--  418 (626)
T KOG2106|consen  344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPS--  418 (626)
T ss_pred             EeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCc--
Confidence                            001123577788889999977 999999999999999  444444443 4567889999987  


Q ss_pred             eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCE
Q 012799          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW  374 (456)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  374 (456)
                                                        + .++.|+..|...+.|..+ ...+..... ..+++++.|+|+|.+
T Consensus       419 ----------------------------------g-~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~~  461 (626)
T KOG2106|consen  419 ----------------------------------G-VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGAF  461 (626)
T ss_pred             ----------------------------------c-eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCCE
Confidence                                              3 599999999999999766 333433333 789999999999999


Q ss_pred             EEEEECCCcEEEEeCCCC-eEEEEE-ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCc
Q 012799          375 VASASFDKSIKLWNGTTG-KFVAVF-RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST  452 (456)
Q Consensus       375 l~s~~~dg~i~iwd~~~~-~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~  452 (456)
                      ||.|+.|+.|+||.+... ...... +.+..+|+.+                           .||+|+++|.+-+-|-.
T Consensus       462 lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithL---------------------------DwS~Ds~~~~~~S~d~e  514 (626)
T KOG2106|consen  462 LAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHL---------------------------DWSSDSQFLVSNSGDYE  514 (626)
T ss_pred             EEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEe---------------------------eecCCCceEEeccCceE
Confidence            999999999999988764 333322 2333678888                           99999999999999988


Q ss_pred             eEEC
Q 012799          453 LKVT  456 (456)
Q Consensus       453 v~iW  456 (456)
                      |-.|
T Consensus       515 iLyW  518 (626)
T KOG2106|consen  515 ILYW  518 (626)
T ss_pred             EEEE
Confidence            8777

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7.6e-26  Score=206.56  Aligned_cols=203  Identities=24%  Similarity=0.420  Sum_probs=171.8

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWD  178 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd  178 (456)
                      +.+.+.||.+.|..+.||.++ +|++++.|++|++|++...+++..+. |.+.|+|++|+| |.+|+++|+-||.|+||+
T Consensus       361 P~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWs  438 (712)
T KOG0283|consen  361 PFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWS  438 (712)
T ss_pred             chhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEee
Confidence            457899999999999999864 79999999999999999999999887 999999999999 889999999999999999


Q ss_pred             CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec--------CcCccEEEEEeCC
Q 012799          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--------GHTLAVTCVKWGG  250 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~  250 (456)
                      +...+.+.  ...-..-|++++|.|     +|+..++|+.+|.+++|+....+......        .....|+.+.+.|
T Consensus       439 I~d~~Vv~--W~Dl~~lITAvcy~P-----dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p  511 (712)
T KOG0283|consen  439 ISDKKVVD--WNDLRDLITAVCYSP-----DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFP  511 (712)
T ss_pred             cCcCeeEe--ehhhhhhheeEEecc-----CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecC
Confidence            98877653  444558899999999     99999999999999999998777654432        1123799999998


Q ss_pred             CC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcce--EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799          251 DG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWV--NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (456)
Q Consensus       251 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (456)
                      ..  .+++.+.|..|+|||.++..++..+++....-  ....|+.+                                  
T Consensus       512 ~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~D----------------------------------  557 (712)
T KOG0283|consen  512 GDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSD----------------------------------  557 (712)
T ss_pred             CCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccC----------------------------------
Confidence            65  79999999999999999888888887643321  22334444                                  


Q ss_pred             CCCCEEEEEeCCCcEEEEecC
Q 012799          327 NAPERLVSGSDDFTMFLWEPA  347 (456)
Q Consensus       327 ~~~~~l~~~~~dg~i~iwd~~  347 (456)
                        +++|+++++|..|++|+..
T Consensus       558 --gk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  558 --GKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             --CCEEEEeecCceEEEEeCC
Confidence              7889999999999999963

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=2.8e-27  Score=211.56  Aligned_cols=255  Identities=24%  Similarity=0.443  Sum_probs=222.3

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI  199 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  199 (456)
                      +.+++....+-.+++|+.+.      +..|...+.++..-..++.+++|+.|..+.+|.+..-..+. .+.+|..+|.++
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-S~~~hespIeSl   76 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-SLTGHESPIESL   76 (825)
T ss_pred             ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-eeeccCCcceee
Confidence            33445555566678888653      33588888888887788899999999999999987666554 478999999999


Q ss_pred             EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee
Q 012799          200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK  278 (456)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  278 (456)
                      .|++     ...++++|+.+|+|++||++..+.++++.+|...+..+.|+|-+ +++.|+.|+.+++||.+...+...+.
T Consensus        77 ~f~~-----~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~  151 (825)
T KOG0267|consen   77 TFDT-----SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK  151 (825)
T ss_pred             ecCc-----chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec
Confidence            9998     77899999999999999999999999999999999999999999 78889999999999999888999999


Q ss_pred             cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc
Q 012799          279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG  358 (456)
Q Consensus       279 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  358 (456)
                      +|...+..+.++|+                                    |.+++.|++|..+++||...+ .....+..
T Consensus       152 s~~~vv~~l~lsP~------------------------------------Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~  194 (825)
T KOG0267|consen  152 SHTRVVDVLRLSPD------------------------------------GRWVASGGEDNTVKIWDLTAG-KLSKEFKS  194 (825)
T ss_pred             CCcceeEEEeecCC------------------------------------CceeeccCCcceeeeeccccc-cccccccc
Confidence            99999999999998                                    556999999999999996554 46667889


Q ss_pred             ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEe
Q 012799          359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS  438 (456)
Q Consensus       359 ~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  438 (456)
                      |...+..+.|+|..-++++|+.|+++++||+++.+.+.........|.+.                           +|+
T Consensus       195 ~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~---------------------------~fn  247 (825)
T KOG0267|consen  195 HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSL---------------------------AFN  247 (825)
T ss_pred             ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceee---------------------------eec
Confidence            99999999999999999999999999999999999988888778888888                           789


Q ss_pred             cCCCeEEEeeCC
Q 012799          439 ADSRLLLSGSKD  450 (456)
Q Consensus       439 ~dg~~l~s~s~D  450 (456)
                      |+++.+++|-.+
T Consensus       248 ~~~~~~~~G~q~  259 (825)
T KOG0267|consen  248 PDGKIVLSGEQI  259 (825)
T ss_pred             CCceeeecCchh
Confidence            999888887654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.4e-24  Score=190.03  Aligned_cols=274  Identities=22%  Similarity=0.312  Sum_probs=218.6

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce-eEEec-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  185 (456)
                      ..+|+++||+.+.+.||.+-.||.|-+|++..+-.. ..+.+ ....|.+++|+ ++..|++.+.+|.|.-||+.++++.
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~  103 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK  103 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence            457999999999999999999999999999875332 33444 45789999999 5667889999999999999999877


Q ss_pred             cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE--EecCcCccEEEEEeCCCC-eEEEEeCCCc
Q 012799          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDG-VIYTGSQDCT  262 (456)
Q Consensus       186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~dg~  262 (456)
                      . ......+.|++++.+|     .+..++.|+.||.+..++...++...  .+....+.|.+++|+|++ .+++|+.||.
T Consensus       104 ~-~~d~~gg~IWsiai~p-----~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~  177 (691)
T KOG2048|consen  104 Y-NIDSNGGAIWSIAINP-----ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV  177 (691)
T ss_pred             E-EecCCCcceeEEEeCC-----ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence            6 4666778999999999     77899999999988888888776554  344557899999999999 7999999999


Q ss_pred             EEEEECCCCeEEEEeec--------CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          263 IKVWETTQGKLIRELKG--------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       263 i~iwd~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      |++||..++..+.....        ...-|.++.+-.                                     ...+++
T Consensus       178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-------------------------------------d~tI~s  220 (691)
T KOG2048|consen  178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-------------------------------------DSTIAS  220 (691)
T ss_pred             EEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-------------------------------------cCcEEE
Confidence            99999999887763321        122244444332                                     345999


Q ss_pred             EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE----EEEEecccccEEEEEe
Q 012799          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQIRF  410 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~  410 (456)
                      |...|+|.+||... ....+....|...|.+++.++++.++++++.|+.|.-|...++..    ......|...|.++  
T Consensus       221 gDS~G~V~FWd~~~-gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~--  297 (691)
T KOG2048|consen  221 GDSAGTVTFWDSIF-GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSM--  297 (691)
T ss_pred             ecCCceEEEEcccC-cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceee--
Confidence            99999999999554 456677888999999999999999999999999999998776533    22334677788888  


Q ss_pred             eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                                               +..++  .|++||.|..+.+
T Consensus       298 -------------------------av~~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  298 -------------------------AVIEN--ALISGGRDFTLAI  315 (691)
T ss_pred             -------------------------eeecc--eEEecceeeEEEE
Confidence                                     44554  8888888888765

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=3.2e-25  Score=183.92  Aligned_cols=245  Identities=26%  Similarity=0.479  Sum_probs=195.3

Q ss_pred             cccCCcccEEEEEECCCC--CeEEEEECCCcEEEEeCCC----------------CcceeEEecCCCCEEEEEEcC-CCC
Q 012799          103 TIAGHTEAVLSVAFSPDG--RQLASGSGDTTVRLWDLNT----------------QTPMFKCTGHKNWVLCIAWSA-DGK  163 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~~~--~~l~~~~~d~~v~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~-~~~  163 (456)
                      ...+|.+.|+.+.-++-+  .+.|+-+..|.|+||++..                .+++.++.+|...=+.++||| ...
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g  225 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG  225 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence            345788999998888865  4566667899999999753                357788889999999999999 233


Q ss_pred             EEEEEeCCCeEEEEeCCCCCC--ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC---eEEEEecC
Q 012799          164 HLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSG  238 (456)
Q Consensus       164 ~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~  238 (456)
                      .|++|..-+.|++|...+|.-  -...+.+|...|..++|+|.    ....|++|+.||+|+|||++.+   .++.. +.
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSpt----E~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kA  300 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPT----EDGVFASCSCDGSIRIWDIRSGPKKAAVST-KA  300 (440)
T ss_pred             ccccCccccceEeeeeccCceeecCccccccccchhhhccCCc----cCceEEeeecCceEEEEEecCCCccceeEe-ec
Confidence            588888888999999988753  22357789999999999996    4468999999999999999987   33433 78


Q ss_pred             cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCC---CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799          239 HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ---GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (456)
Q Consensus       239 ~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (456)
                      |.+.|+.+.|+... +|++|+.||+++|||+++   ++++..++.|..+|+++.|+|..                     
T Consensus       301 h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e---------------------  359 (440)
T KOG0302|consen  301 HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE---------------------  359 (440)
T ss_pred             cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc---------------------
Confidence            99999999999876 899999999999999986   57888999999999999999973                     


Q ss_pred             HHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC---------------Cccccccc--cccEeEEEECCC-CCEEE
Q 012799          315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---------------PKTRMTGH--QQLVNHVYFSPD-GQWVA  376 (456)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------~~~~~~~~--~~~v~~~~~sp~-~~~l~  376 (456)
                                    ...|++++.|..|.+||+.....               +.+.+.-|  +..+..+.|++. -.+|+
T Consensus       360 --------------~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lv  425 (440)
T KOG0302|consen  360 --------------DSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLV  425 (440)
T ss_pred             --------------CceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEE
Confidence                          45589999999999999754321               11223334  346788899984 34788


Q ss_pred             EEECCCcEEEEe
Q 012799          377 SASFDKSIKLWN  388 (456)
Q Consensus       377 s~~~dg~i~iwd  388 (456)
                      +.+.|| +.||.
T Consensus       426 sTa~dG-fnVfk  436 (440)
T KOG0302|consen  426 STAIDG-FNVFK  436 (440)
T ss_pred             Eecccc-eeEEE
Confidence            888888 45553

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=2.7e-25  Score=198.77  Aligned_cols=249  Identities=22%  Similarity=0.285  Sum_probs=207.5

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC---CCCEEEEEeCCCeEEEEeC
Q 012799          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA---DGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~  179 (456)
                      .+.+....|.+++.+|+|++||+|..-|+++||++.+.+....+..|+..|.|+.|+.   ..++||++++|..|+|||.
T Consensus       454 s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv  533 (1080)
T KOG1408|consen  454 STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV  533 (1080)
T ss_pred             hhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence            3445667899999999999999999999999999999888888999999999999985   4679999999999999999


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-----cCccEEEEEeCCCC-e
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-----HTLAVTCVKWGGDG-V  253 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~  253 (456)
                      ...-.+...+.+|...|+++.|-...   -...+++++.|..|.+--.....-...+..     ....+..+++.|.. +
T Consensus       534 ~rny~l~qtld~HSssITsvKFa~~g---ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~  610 (1080)
T KOG1408|consen  534 KRNYDLVQTLDGHSSSITSVKFACNG---LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL  610 (1080)
T ss_pred             ccccchhhhhcccccceeEEEEeecC---CceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce
Confidence            87776667899999999999998722   126789999998776543322111112211     24568899999987 9


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeec---CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCC
Q 012799          254 IYTGSQDCTIKVWETTQGKLIRELKG---HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (456)
Q Consensus       254 l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (456)
                      +++++.|..|+|||+.+++..+.|++   |.+....+...|.                                    +.
T Consensus       611 v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS------------------------------------gi  654 (1080)
T KOG1408|consen  611 VVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS------------------------------------GI  654 (1080)
T ss_pred             EEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC------------------------------------cc
Confidence            99999999999999999999999976   4455666777776                                    66


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (456)
Q Consensus       331 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  391 (456)
                      |+++.+.|.++.++|...+ +.+..+.+|...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus       655 Y~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  655 YLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEEEeecCCceEEEEeccc-hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            7999999999999997665 46677889999999999999999999999999999999753

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.94  E-value=4.7e-25  Score=194.78  Aligned_cols=276  Identities=21%  Similarity=0.326  Sum_probs=202.6

Q ss_pred             EEECCC---CCeEEEEECCCcEEEEeCCCCcc------eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799          114 VAFSPD---GRQLASGSGDTTVRLWDLNTQTP------MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (456)
Q Consensus       114 ~~~s~~---~~~l~~~~~d~~v~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  184 (456)
                      ..|++.   ...||.+..||.|.++|......      +.....|...|..+.|.|....|++++.|.++++||++.++.
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            566652   34788999999999999865432      345568999999999999778999999999999999998887


Q ss_pred             ccc-cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe--------------------E-------EEEe
Q 012799          185 SGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--------------------C-------VICL  236 (456)
Q Consensus       185 ~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------------~-------~~~~  236 (456)
                      ... ...+|...|.+++|.|.    +...|++|+.||.|.|||++-..                    +       +...
T Consensus       135 ~G~~~~~GH~~SvkS~cf~~~----n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~  210 (720)
T KOG0321|consen  135 VGGRLNLGHTGSVKSECFMPT----NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW  210 (720)
T ss_pred             ecceeecccccccchhhhccC----CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence            652 47899999999999996    55789999999999999986322                    0       1111


Q ss_pred             cCcCc----cEEEEEeCCCCeEEEEeC-CCcEEEEECCCCeEEEEee--------cC---CcceEEEEecCcceeeeccc
Q 012799          237 SGHTL----AVTCVKWGGDGVIYTGSQ-DCTIKVWETTQGKLIRELK--------GH---GHWVNSLALSTEYALRTGAF  300 (456)
Q Consensus       237 ~~~~~----~v~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~--------~~---~~~i~~~~~~~~~~~~~~~~  300 (456)
                      +.+..    .|+.+.|-.+..|++++. |+.|++||++.........        .+   ...+.++....         
T Consensus       211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs---------  281 (720)
T KOG0321|consen  211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS---------  281 (720)
T ss_pred             ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC---------
Confidence            22322    355566665668888777 9999999999765433221        11   11233333332         


Q ss_pred             cCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-CCcccccccccc--EeEEEECCCCCEEEE
Q 012799          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQL--VNHVYFSPDGQWVAS  377 (456)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~--v~~~~~sp~~~~l~s  377 (456)
                                                 .|.++++.+.|+.|++|++.... .+...+.++...  -..-..+||+.+|++
T Consensus       282 ---------------------------sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S  334 (720)
T KOG0321|consen  282 ---------------------------SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS  334 (720)
T ss_pred             ---------------------------CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEec
Confidence                                       26778888889999999987644 344444444321  122357899999999


Q ss_pred             EECCCcEEEEeCCCCeE-EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCC-CeEEEeeCCCceEE
Q 012799          378 ASFDKSIKLWNGTTGKF-VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKV  455 (456)
Q Consensus       378 ~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~s~s~Dg~v~i  455 (456)
                      |+.|...++|.+.+.+. ...+.+|...|+.+                           +|.|.. .-++++++|.+++|
T Consensus       335 gSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V---------------------------~w~pS~~t~v~TcSdD~~~ki  387 (720)
T KOG0321|consen  335 GSSDEQAYIWVVSSPEAPPALLLGHTREVTTV---------------------------RWLPSATTPVATCSDDFRVKI  387 (720)
T ss_pred             cCCCcceeeeeecCccCChhhhhCcceEEEEE---------------------------eeccccCCCceeeccCcceEE
Confidence            99999999999988654 66778999999999                           666532 35677799999999


Q ss_pred             C
Q 012799          456 T  456 (456)
Q Consensus       456 W  456 (456)
                      |
T Consensus       388 W  388 (720)
T KOG0321|consen  388 W  388 (720)
T ss_pred             E
Confidence            9

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=3.8e-24  Score=190.81  Aligned_cols=291  Identities=23%  Similarity=0.386  Sum_probs=223.6

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce-------eEEecCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-------FKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  174 (456)
                      ..+.||.+.|.++.|+|.+..|++++.|.++.+|.-.+..-+       -...+.........|+|+++.+++-+..|..
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~  340 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF  340 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence            345699999999999999999999999999999987654222       1223455678899999999999999999999


Q ss_pred             EEEeCCCCC--CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC------------------------
Q 012799          175 QCWDPQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS------------------------  228 (456)
Q Consensus       175 ~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~------------------------  228 (456)
                      ++|..+...  .......+|.+.|.++.|.|     .|.++++.+.|.+-+++-.-                        
T Consensus       341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-----sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~  415 (764)
T KOG1063|consen  341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-----SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF  415 (764)
T ss_pred             EEEeccCccceeeccccccccccceeeeecC-----CCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence            999833221  12235789999999999999     77888888887776665310                        


Q ss_pred             -----------------------------------------------------------------CCeE-----------
Q 012799          229 -----------------------------------------------------------------LRKC-----------  232 (456)
Q Consensus       229 -----------------------------------------------------------------~~~~-----------  232 (456)
                                                                                       ++..           
T Consensus       416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~  495 (764)
T KOG1063|consen  416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA  495 (764)
T ss_pred             ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence                                                                             0000           


Q ss_pred             ----------------------EEEecCcCccEEEEEeCCCC-eEEEEeCCC-----cEEEEECCCCeEEEEeecCCcce
Q 012799          233 ----------------------VICLSGHTLAVTCVKWGGDG-VIYTGSQDC-----TIKVWETTQGKLIRELKGHGHWV  284 (456)
Q Consensus       233 ----------------------~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~i  284 (456)
                                            +..+-+|...|.+++.+|++ .+++++...     .|++|+..+...++.+.+|.-.|
T Consensus       496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTV  575 (764)
T KOG1063|consen  496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTV  575 (764)
T ss_pred             CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEE
Confidence                                  01122788889999999999 777766543     49999999988888999999999


Q ss_pred             EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc---cccccc
Q 012799          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR---MTGHQQ  361 (456)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~  361 (456)
                      +.++|+|+                                    +.+|++.+.|+++.+|...........   .+.|..
T Consensus       576 T~l~FSpd------------------------------------g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtR  619 (764)
T KOG1063|consen  576 TRLAFSPD------------------------------------GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTR  619 (764)
T ss_pred             EEEEECCC------------------------------------CcEEEEeecCceEEeeeeecccchhhhhccccccce
Confidence            99999998                                    667999999999999986544433333   678999


Q ss_pred             cEeEEEECCCCCEEEEEECCCcEEEEeCCCC--eEEEE--EecccccEEEEEeeeeeeecCCCCceeeecccccccceeE
Q 012799          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTG--KFVAV--FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (456)
Q Consensus       362 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~--~~~~~--~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (456)
                      .|.++.|+|++.+++|+|.|.+|++|.....  +.+..  ...+..+|+.+++.+                       ..
T Consensus       620 IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~-----------------------~~  676 (764)
T KOG1063|consen  620 IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP-----------------------VD  676 (764)
T ss_pred             EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec-----------------------cc
Confidence            9999999999999999999999999998877  43332  235677888883310                       11


Q ss_pred             ecC-CCeEEEeeCCCceEEC
Q 012799          438 SAD-SRLLLSGSKDSTLKVT  456 (456)
Q Consensus       438 s~d-g~~l~s~s~Dg~v~iW  456 (456)
                      .++ +..++.|-+.|.|.+|
T Consensus       677 ~~e~~~~vavGle~GeI~l~  696 (764)
T KOG1063|consen  677 HNEKGDVVAVGLEKGEIVLW  696 (764)
T ss_pred             cccccceEEEEecccEEEEE
Confidence            222 2367778889999887

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=8.4e-23  Score=182.28  Aligned_cols=261  Identities=15%  Similarity=0.127  Sum_probs=188.6

Q ss_pred             cccccccCCcccEEEEEECCCCCeE-EEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEE
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQC  176 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l-~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~v  176 (456)
                      ++.+.+.+|. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.+++
T Consensus        22 ~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~   99 (300)
T TIGR03866        22 EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTV   99 (300)
T ss_pred             ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEE
Confidence            3445555554 36789999999876 5667889999999998887776665443 5778999999977655 56899999


Q ss_pred             EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC-cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG-DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (456)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l  254 (456)
                      ||+++++.+...  .+...+.+++|+|     ++..+++++.++ .+.+||.++++....... .....+++|++++ .+
T Consensus       100 ~d~~~~~~~~~~--~~~~~~~~~~~~~-----dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l  171 (300)
T TIGR03866       100 IDIETRKVLAEI--PVGVEPEGMAVSP-----DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKEL  171 (300)
T ss_pred             EECCCCeEEeEe--eCCCCcceEEECC-----CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEE
Confidence            999887654322  1223467889988     899999988775 567789988877655432 3345789999999 55


Q ss_pred             EE-EeCCCcEEEEECCCCeEEEEeecCCc-------ceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799          255 YT-GSQDCTIKVWETTQGKLIRELKGHGH-------WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (456)
Q Consensus       255 ~~-~~~dg~i~iwd~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (456)
                      ++ +..++.|++||+++++.+..+..+..       ....++++|+                                  
T Consensus       172 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d----------------------------------  217 (300)
T TIGR03866       172 WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD----------------------------------  217 (300)
T ss_pred             EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC----------------------------------
Confidence            44 45689999999999887766543211       1234556665                                  


Q ss_pred             CCCCEE-EEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE-ECCCcEEEEeCCCCeEEEEEeccccc
Q 012799          327 NAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFRGHVGP  404 (456)
Q Consensus       327 ~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~  404 (456)
                        ++++ ++...++.+.+||..+... .... .+...+.+++|+|+|++|+++ +.+|.|++||+.+++.+..++... .
T Consensus       218 --g~~~~~~~~~~~~i~v~d~~~~~~-~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~  292 (300)
T TIGR03866       218 --GKTAFVALGPANRVAVVDAKTYEV-LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR-L  292 (300)
T ss_pred             --CCEEEEEcCCCCeEEEEECCCCcE-EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc-c
Confidence              4444 4445567899999765432 2222 234568999999999998876 468999999999999999888654 4


Q ss_pred             EEEE
Q 012799          405 VYQI  408 (456)
Q Consensus       405 v~~i  408 (456)
                      .+++
T Consensus       293 ~~~~  296 (300)
T TIGR03866       293 PWGV  296 (300)
T ss_pred             ccee
Confidence            4777

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=9.2e-24  Score=194.31  Aligned_cols=238  Identities=16%  Similarity=0.301  Sum_probs=200.2

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC
Q 012799          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (456)
Q Consensus       148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  227 (456)
                      .|...-+.++|.|+|.+|++++.||.|++|+..+.......+..+...|.+++-       .+.+|++|+.+++|.+|.+
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~-------~s~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC-------YSNHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee-------cccceEEeeccceEEEeeC
Confidence            588889999999999999999999999999987663222234446777887775       4569999999999999999


Q ss_pred             CCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCc
Q 012799          228 SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ  306 (456)
Q Consensus       228 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  306 (456)
                      .+++.-..+....-++++++++.+| +++.|+.|-.|++-++........+.+|..+|.++.++|.              
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~--------------  149 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK--------------  149 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCC--------------
Confidence            9887766666677899999999999 9999999999999999999999999999999999999998              


Q ss_pred             cCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc--------cccccEeEEEECCCCCEEEEE
Q 012799          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--------GHQQLVNHVYFSPDGQWVASA  378 (456)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~v~~~~~sp~~~~l~s~  378 (456)
                                            +++|++.+.||.|++||+...... ..+.        .....+..++|+|+|..++..
T Consensus       150 ----------------------~~fLAvss~dG~v~iw~~~~~~~~-~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~  206 (933)
T KOG1274|consen  150 ----------------------GNFLAVSSCDGKVQIWDLQDGILS-KTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP  206 (933)
T ss_pred             ----------------------CCEEEEEecCceEEEEEcccchhh-hhcccCCccccccccceeeeeeecCCCCeEEee
Confidence                                  666999999999999998765421 1111        114567889999998888888


Q ss_pred             ECCCcEEEEeCCCCeEEEEEec--ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          379 SFDKSIKLWNGTTGKFVAVFRG--HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       379 ~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +.|+.|++|+..+.+....+..  +...+..+                           +|+|+|+|||+++.||.|-||
T Consensus       207 ~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~---------------------------~wsPnG~YiAAs~~~g~I~vW  259 (933)
T KOG1274|consen  207 PVDNTVKVYSRKGWELQFKLRDKLSSSKFSDL---------------------------QWSPNGKYIAASTLDGQILVW  259 (933)
T ss_pred             ccCCeEEEEccCCceeheeecccccccceEEE---------------------------EEcCCCcEEeeeccCCcEEEE
Confidence            8999999999999988887763  33346666                           999999999999999999999

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.5e-24  Score=181.53  Aligned_cols=277  Identities=19%  Similarity=0.304  Sum_probs=199.9

Q ss_pred             EEEECCCCCeEEEEECC---CcEEEEeCCCCcceeEEecC----CCCEEEEEEcC-------CCCEEEEEeCCCeEEEEe
Q 012799          113 SVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGH----KNWVLCIAWSA-------DGKHLVSGSKAGELQCWD  178 (456)
Q Consensus       113 ~~~~s~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~-------~~~~l~s~~~dg~i~vwd  178 (456)
                      .+..-|+.++++++-.+   ..+-+|=.+....- .+-.|    .....|++|..       .|+++|.|+.|..|.|||
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n-lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWD  208 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN-LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWD  208 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc-eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEec
Confidence            45667777777776432   23334433332211 11112    23446777753       378999999999999999


Q ss_pred             CCCCCCc--------------------cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC
Q 012799          179 PQTGKPS--------------------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG  238 (456)
Q Consensus       179 ~~~~~~~--------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  238 (456)
                      +.-...+                    .....+|...|.++.|...    ..+.|++||.|.+|++||+.++++..++..
T Consensus       209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~----~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~  284 (463)
T KOG0270|consen  209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN----FRNVLASGSADKTVKLWDVDTGKPKSSITH  284 (463)
T ss_pred             cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc----cceeEEecCCCceEEEEEcCCCCcceehhh
Confidence            8632210                    0113468888888888763    346899999999999999999999999999


Q ss_pred             cCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799          239 HTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (456)
Q Consensus       239 ~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (456)
                      |...|.++.|+|..  .|++|+.|+++.+.|+|........-...+.|..++|.|..                       
T Consensus       285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~s-----------------------  341 (463)
T KOG0270|consen  285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHS-----------------------  341 (463)
T ss_pred             cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCC-----------------------
Confidence            99999999999976  99999999999999999532222111244668889998873                       


Q ss_pred             HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCC-CCEEEEEECCCcEEEEeCCCCeE-
Q 012799          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKF-  394 (456)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~-  394 (456)
                                  ...+++++.||+++-+|+|....++..+..|.++|.++++++. -.++++++.|+.|++|++..-.. 
T Consensus       342 ------------e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~  409 (463)
T KOG0270|consen  342 ------------ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK  409 (463)
T ss_pred             ------------ceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence                        4568899999999999999999999999999999999999985 44689999999999999865333 


Q ss_pred             -EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEeeCCCceEEC
Q 012799          395 -VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVT  456 (456)
Q Consensus       395 -~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s~Dg~v~iW  456 (456)
                       +....-.-+...|.                           ++.|+-. +|+.||..+.++||
T Consensus       410 ~v~~~~~~~~rl~c~---------------------------~~~~~~a~~la~GG~k~~~~vw  446 (463)
T KOG0270|consen  410 SVKEHSFKLGRLHCF---------------------------ALDPDVAFTLAFGGEKAVLRVW  446 (463)
T ss_pred             ccccccccccceeec---------------------------ccCCCcceEEEecCccceEEEe
Confidence             22111111122222                           5566554 67788888889998

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=6.2e-24  Score=170.78  Aligned_cols=207  Identities=23%  Similarity=0.373  Sum_probs=174.8

Q ss_pred             cCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCC--------------ccccccCcccceEEEEecccccCCCCCE
Q 012799          148 GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKP--------------SGNPLSGHKKWITGISWEPVHLNAPCRR  212 (456)
Q Consensus       148 ~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~  212 (456)
                      .|.+.|+++...+ .|+++++|+.||.|.+||+++...              -.....+|+-.|.++.|-|.    |...
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~----DtGm  116 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI----DTGM  116 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee----cCce
Confidence            4889999999988 789999999999999999986431              01124568889999999996    6678


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC----eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEE
Q 012799          213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA  288 (456)
Q Consensus       213 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  288 (456)
                      |.+++.|.++++||.++.+....++ ..+.|.+-+++|-.    .+++|..+-.|++.|+.+|..-.++.+|...|.++.
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE  195 (397)
T ss_pred             eecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence            9999999999999999998887775 45678888888733    778888889999999999999999999999999999


Q ss_pred             ecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC--------------Ccc
Q 012799          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--------------PKT  354 (456)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~  354 (456)
                      |+|.+.+                                   .|++|+.||.|++||++....              ..+
T Consensus       196 Wsp~~e~-----------------------------------vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~  240 (397)
T KOG4283|consen  196 WSPSSEW-----------------------------------VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK  240 (397)
T ss_pred             eccCcee-----------------------------------EEEecCCCceEEEEEeecccceeEEeecccCccCcccc
Confidence            9998644                                   489999999999999876421              122


Q ss_pred             ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799          355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF  394 (456)
Q Consensus       355 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~  394 (456)
                      .-..|.+.+..++|+.++.++++++.|..+++|+..+|+-
T Consensus       241 ~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  241 TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             ccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence            2457888999999999999999999999999999988764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=3.2e-24  Score=189.59  Aligned_cols=253  Identities=21%  Similarity=0.334  Sum_probs=188.2

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE--EecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEE
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCW  177 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vw  177 (456)
                      ......|.+.|..+.|.|....|++++.|.++++||+.+.+....  +.+|.+.|.+++|.| +...+++|+.||.|.||
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            345568999999999999667899999999999999999887766  889999999999999 55688999999999999


Q ss_pred             eCCCCCCcc--------------------------ccccCcccceEE---EEecccccCCCCCEEEEEeC-CCcEEEEEC
Q 012799          178 DPQTGKPSG--------------------------NPLSGHKKWITG---ISWEPVHLNAPCRRFVSASK-DGDARIWDV  227 (456)
Q Consensus       178 d~~~~~~~~--------------------------~~~~~~~~~v~~---~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~  227 (456)
                      |++-.....                          .....+...|.+   +.+..     |...|++++. |+.|++||+
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-----De~tlaSaga~D~~iKVWDL  247 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-----DESTLASAGAADSTIKVWDL  247 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-----ccceeeeccCCCcceEEEee
Confidence            986432100                          001122333333   23323     7788999888 999999999


Q ss_pred             CCCeEEEEe--------cCc---CccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCe--EEEEeecCCcceEEEEecCcc
Q 012799          228 SLRKCVICL--------SGH---TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEY  293 (456)
Q Consensus       228 ~~~~~~~~~--------~~~---~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~  293 (456)
                      +........        ..|   ...++++..+..| +|++.+.|+.|++|++.+-.  ++..+.++...-.-+      
T Consensus       248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v------  321 (720)
T KOG0321|consen  248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV------  321 (720)
T ss_pred             cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeee------
Confidence            876544322        122   3457888888878 88888889999999998632  222232221110000      


Q ss_pred             eeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC-
Q 012799          294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-  372 (456)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~-  372 (456)
                                                  .....+++.++++|+.|...++|.+.........+.+|.-.|++++|.|.. 
T Consensus       322 ----------------------------ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~  373 (720)
T KOG0321|consen  322 ----------------------------KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT  373 (720)
T ss_pred             ----------------------------eeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC
Confidence                                        111223477899999999999999999888888999999999999999843 


Q ss_pred             CEEEEEECCCcEEEEeCCCC
Q 012799          373 QWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       373 ~~l~s~~~dg~i~iwd~~~~  392 (456)
                      .-+++++.|.++++|++..+
T Consensus       374 t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  374 TPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CCceeeccCcceEEEeccCc
Confidence            33788899999999998654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=6.4e-23  Score=182.73  Aligned_cols=250  Identities=22%  Similarity=0.311  Sum_probs=208.6

Q ss_pred             ccccccccCC-cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 012799           98 NRCSATIAGH-TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (456)
Q Consensus        98 ~~~~~~l~~h-~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  176 (456)
                      .-+...+.|| +..|.+++|++.+ .|++.+.+|.|.-||+.+++++..+....+.|.+++.+|.+..++.|+.||.+..
T Consensus        58 w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~  136 (691)
T KOG2048|consen   58 WFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYD  136 (691)
T ss_pred             ceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEE
Confidence            3355667666 5689999999555 5888889999999999999999999999999999999999999999999998888


Q ss_pred             EeCCCCCCccc-cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------c-CcCccEEEEE
Q 012799          177 WDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-------S-GHTLAVTCVK  247 (456)
Q Consensus       177 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-~~~~~v~~~~  247 (456)
                      ++...+..... .+....+.|.++.|+|     ++..++.|+.||.|++||..++..+...       . ....-|.++.
T Consensus       137 ~s~~p~~I~~~r~l~rq~sRvLslsw~~-----~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~  211 (691)
T KOG2048|consen  137 FSIGPDKITYKRSLMRQKSRVLSLSWNP-----TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVL  211 (691)
T ss_pred             EecCCceEEEEeecccccceEEEEEecC-----CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEE
Confidence            88777765432 3445568999999999     8889999999999999999988776622       1 1344578888


Q ss_pred             eCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799          248 WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (456)
Q Consensus       248 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (456)
                      +..++.+++|..-|+|.+||...+..++.+..|...|.+++..++                                   
T Consensus       212 ~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~-----------------------------------  256 (691)
T KOG2048|consen  212 FLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN-----------------------------------  256 (691)
T ss_pred             EeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC-----------------------------------
Confidence            888889999999999999999999999999999999999999987                                   


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCC---CccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799          328 APERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (456)
Q Consensus       328 ~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  391 (456)
                       .+++++++.|+.|..|.......   .......|...|.+++..++  .|++|+.|..+.+-....
T Consensus       257 -~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  257 -EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             -CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence             67799999999999998665543   22234567788999999876  899999999888776543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.9e-24  Score=183.12  Aligned_cols=236  Identities=23%  Similarity=0.398  Sum_probs=186.3

Q ss_pred             CCeEEEEECCCcEEEEeCCCC---cce------------------eEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEE
Q 012799          120 GRQLASGSGDTTVRLWDLNTQ---TPM------------------FKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCW  177 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~---~~~------------------~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vw  177 (456)
                      |+++|.|+.|..|.|||+.-.   .+.                  ..-.+|+..|.+++|+.. .+.||+||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            679999999999999997521   111                  112368899999999874 5689999999999999


Q ss_pred             eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEE
Q 012799          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIY  255 (456)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~  255 (456)
                      |+.++++.. .+..|.+.|.++.|+|.    ....|++|+.|++|.+.|.+........-...+.|-.++|.|..  .++
T Consensus       272 D~~~g~p~~-s~~~~~k~Vq~l~wh~~----~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~  346 (463)
T KOG0270|consen  272 DVDTGKPKS-SITHHGKKVQTLEWHPY----EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF  346 (463)
T ss_pred             EcCCCCcce-ehhhcCCceeEEEecCC----CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence            999999876 56789999999999995    55799999999999999998533322222246789999999977  888


Q ss_pred             EEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          256 TGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       256 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      ++..||+|+-+|+|.. +++.+++.|..+|.+++++...                                   +..+++
T Consensus       347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~-----------------------------------p~~l~t  391 (463)
T KOG0270|consen  347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQT-----------------------------------PGLLST  391 (463)
T ss_pred             EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCC-----------------------------------Ccceee
Confidence            9999999999999985 8999999999999999998762                                   567999


Q ss_pred             EeCCCcEEEEecCCCCCCcccccc-ccccEeEEEECCCCCE-EEEEECCCcEEEEeCCCCeEE
Q 012799          335 GSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQW-VASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~~~~~  395 (456)
                      ++.|+.+++|++.........-.. .-+...|.++.|+-.+ ++.|+..+.++|||+.+...+
T Consensus       392 ~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  392 ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            999999999997655432211111 1123567778886554 788888889999999876543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.9e-24  Score=179.26  Aligned_cols=315  Identities=17%  Similarity=0.239  Sum_probs=231.5

Q ss_pred             hhhhHhhcCcCcccEEEEEEeccceEEEeecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC------C
Q 012799           67 LGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT------Q  140 (456)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~------~  140 (456)
                      +..+|.+++++..+.+...|+|...-    .+-|.+.+.+|.+.|+++.|+.++++||+|+.|..+++|+++.      .
T Consensus        19 i~~FL~QR~i~~~~~~~k~F~~~~~~----R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~   94 (609)
T KOG4227|consen   19 IESFLCQREIGSVKSVVKTFRPDFQH----RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP   94 (609)
T ss_pred             eeeeeeecccCCChhhhhhhchhhhh----cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC
Confidence            45677788888888777778776543    3457788999999999999999999999999999999999863      2


Q ss_pred             cceeEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcc---cceEEEEecccccCCCCCEEEEE
Q 012799          141 TPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK---KWITGISWEPVHLNAPCRRFVSA  216 (456)
Q Consensus       141 ~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~l~~~  216 (456)
                      +++.... .|...|.|++|....+++++|+.+++|.+.|+++.+.+.  ...|.   +.|+.+..+|     -.+.|++.
T Consensus        95 KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~--V~~~~~~~~~VY~m~~~P-----~DN~~~~~  167 (609)
T KOG4227|consen   95 KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY--VANENNNRGDVYHMDQHP-----TDNTLIVV  167 (609)
T ss_pred             CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeee--eecccCcccceeecccCC-----CCceEEEE
Confidence            3443332 466899999999999999999999999999999988764  33343   4899999999     56899999


Q ss_pred             eCCCcEEEEECCCCe-E--EEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeE-EEE------eecCCcce
Q 012799          217 SKDGDARIWDVSLRK-C--VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKL-IRE------LKGHGHWV  284 (456)
Q Consensus       217 ~~dg~i~iwd~~~~~-~--~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~-~~~------~~~~~~~i  284 (456)
                      +.+|.|.+||.+... .  .............+.|+|..  +|++.+..+-+.+||.+.... +..      ++.....-
T Consensus       168 t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~  247 (609)
T KOG4227|consen  168 TRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEW  247 (609)
T ss_pred             ecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhh
Confidence            999999999998654 2  22233445667888999977  888888889999999986432 111      11111112


Q ss_pred             EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc-----
Q 012799          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-----  359 (456)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----  359 (456)
                      .++.|+|.                                    +..+++--....-.+||+.....++.+....     
T Consensus       248 M~~~~~~~------------------------------------G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~  291 (609)
T KOG4227|consen  248 MGSLWSPS------------------------------------GNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYC  291 (609)
T ss_pred             hheeeCCC------------------------------------CCeehhhhccCCCEEeeeecccceeEeccCCCCcce
Confidence            33445554                                    4445555444555566765544444433211     


Q ss_pred             -cccEeEEEECCCCCEEEEEECCCcEEEEeCCC-----C------------------eEEEEEecccccEEEEEeeeeee
Q 012799          360 -QQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-----G------------------KFVAVFRGHVGPVYQIRFELIYC  415 (456)
Q Consensus       360 -~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-----~------------------~~~~~~~~~~~~v~~i~~~~~~~  415 (456)
                       ...+.+++|.-|- -+++|+.+-.|++|.+..     |                  +.+.++++|...++.+       
T Consensus       292 N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV-------  363 (609)
T KOG4227|consen  292 NIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV-------  363 (609)
T ss_pred             eeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce-------
Confidence             2346778887554 499999999999998652     1                  1245677888888888       


Q ss_pred             ecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                          .|+|...+|++.|-...++||
T Consensus       364 --------------------RF~~H~~~l~SSGVE~~~KlW  384 (609)
T KOG4227|consen  364 --------------------RFSQHNNLLVSSGVENSFKLW  384 (609)
T ss_pred             --------------------eecCCcceEeccchhhheecc
Confidence                                889999999999999999999

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=3.1e-24  Score=184.53  Aligned_cols=237  Identities=19%  Similarity=0.337  Sum_probs=195.2

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC---ccc-cccCcccceEEEEecccccCCCCCEEEEEeCCCcEE
Q 012799          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP---SGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (456)
Q Consensus       148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~  223 (456)
                      .|..-|.++..+...++++||+. |.|+|||+.....   +.. ........|.++...|     ||+.|++|+.-.++.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-----dgrtLivGGeastls  490 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-----DGRTLIVGGEASTLS  490 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC-----CCceEEeccccceee
Confidence            48888899999999999999886 6899999974321   110 1122345688888888     999999999999999


Q ss_pred             EEECCCCeEEEE--ecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccc
Q 012799          224 IWDVSLRKCVIC--LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (456)
Q Consensus       224 iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  300 (456)
                      |||+....+...  +........+++.+||. ..++++.||.|.|||+.+...++.+++|...+.+|.++++        
T Consensus       491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~d--------  562 (705)
T KOG0639|consen  491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKD--------  562 (705)
T ss_pred             eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCC--------
Confidence            999976654332  33333456778899998 8889999999999999999999999999999999999988        


Q ss_pred             cCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEEC
Q 012799          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF  380 (456)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~  380 (456)
                                                  +..|.+|+-|.+++.||++.+.++...  ...+.|.++.++|++.+|+.|..
T Consensus       563 ----------------------------GtklWTGGlDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMe  612 (705)
T KOG0639|consen  563 ----------------------------GTKLWTGGLDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGME  612 (705)
T ss_pred             ----------------------------CceeecCCCccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecc
Confidence                                        667999999999999999887765442  23467999999999999999999


Q ss_pred             CCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       381 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ++.+.+.... +.....+..|..-|.++                           .|.+.|+++++.|.|+.+..|
T Consensus       613 ns~vevlh~s-kp~kyqlhlheScVLSl---------------------------KFa~cGkwfvStGkDnlLnaw  660 (705)
T KOG0639|consen  613 NSNVEVLHTS-KPEKYQLHLHESCVLSL---------------------------KFAYCGKWFVSTGKDNLLNAW  660 (705)
T ss_pred             cCcEEEEecC-CccceeecccccEEEEE---------------------------EecccCceeeecCchhhhhhc
Confidence            9999999864 44455667799999999                           889999999999999998887

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=8.1e-25  Score=206.06  Aligned_cols=276  Identities=21%  Similarity=0.421  Sum_probs=217.5

Q ss_pred             EEEECCCCC-eEEEEE----------CCCcEEEEeCCCCc------ceeEEecCCCCEEEEEEcCCCCE----EEEEeCC
Q 012799          113 SVAFSPDGR-QLASGS----------GDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKH----LVSGSKA  171 (456)
Q Consensus       113 ~~~~s~~~~-~l~~~~----------~d~~v~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~----l~s~~~d  171 (456)
                      .++|+|++. ++|+|.          .+.++-||.+....      ....+. -....+.++|.+.+..    |+.|..|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence            468888876 555542          34566666554322      222222 3556889999987665    8889999


Q ss_pred             CeEEEEeCCCC---C--CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec--CcCccEE
Q 012799          172 GELQCWDPQTG---K--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVT  244 (456)
Q Consensus       172 g~i~vwd~~~~---~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~  244 (456)
                      |.|.+||...-   .  .+......|.+.|..+.|++.    .++.+++|+.||.|.|||++..+.-....  .....|.
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~----q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~  165 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF----QGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK  165 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeecccc----CCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence            99999998752   1  122356789999999999994    45699999999999999998755444442  2457899


Q ss_pred             EEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCc--ceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799          245 CVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGH--WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (456)
Q Consensus       245 ~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (456)
                      +++|+..-  .|++++.+|.+.|||++..+.+-.+..+..  .+..+.|+|+.                           
T Consensus       166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~---------------------------  218 (1049)
T KOG0307|consen  166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH---------------------------  218 (1049)
T ss_pred             EeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCC---------------------------
Confidence            99999755  888999999999999999888877765544  46789999984                           


Q ss_pred             hhhccCCCCCEEEEEeCCC---cEEEEecCCCCCCccccccccccEeEEEECCCC-CEEEEEECCCcEEEEeCCCCeEEE
Q 012799          321 YNKIKGNAPERLVSGSDDF---TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVA  396 (456)
Q Consensus       321 ~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~  396 (456)
                              ...+++++.|.   .|.+||+|....+.+.+.+|...|.++.|++.+ ++|++++.|+.|.+|+.++|+.+.
T Consensus       219 --------aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~  290 (1049)
T KOG0307|consen  219 --------ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG  290 (1049)
T ss_pred             --------ceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence                    33466666553   699999999999999999999999999999955 889999999999999999999999


Q ss_pred             EEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEeeCCCceEE
Q 012799          397 VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKV  455 (456)
Q Consensus       397 ~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s~Dg~v~i  455 (456)
                      .+....+.+..+                           .|+|... .++.++-||.|.|
T Consensus       291 ~~p~~~nW~fdv---------------------------~w~pr~P~~~A~asfdgkI~I  323 (1049)
T KOG0307|consen  291 ELPAQGNWCFDV---------------------------QWCPRNPSVMAAASFDGKISI  323 (1049)
T ss_pred             ecCCCCcceeee---------------------------eecCCCcchhhhheeccceee
Confidence            999888888888                           8898776 7888888999876

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.92  E-value=3.1e-24  Score=189.64  Aligned_cols=165  Identities=22%  Similarity=0.373  Sum_probs=129.2

Q ss_pred             ccccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCcc------eeEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q 012799          100 CSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTP------MFKCTGHKNWVLCIAWSADGKHLVSGSKAG  172 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  172 (456)
                      -+..|.+|.+.|+.+.|+| +..+||+|+.|..|+||.+..+..      ...+.+..-.|.|+.|+|...-|+..+..|
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g  150 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG  150 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence            4556789999999999999 456899999999999999974421      122334456789999999766666667789


Q ss_pred             eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-CeEEEEecCcCcc-EEEEEeCC
Q 012799          173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLA-VTCVKWGG  250 (456)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~-v~~~~~~~  250 (456)
                      ++.+||+.+++... .+.+|...|.+..|+.     ||..+++++.|..|+|||.+. ++.++...+|.+. =..+.|..
T Consensus       151 ~v~i~D~stqk~~~-el~~h~d~vQSa~Wse-----DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~G  224 (1012)
T KOG1445|consen  151 SVYITDISTQKTAV-ELSGHTDKVQSADWSE-----DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAG  224 (1012)
T ss_pred             eEEEEEcccCceee-cccCCchhhhcccccc-----CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeecc
Confidence            99999999998776 6889999999999999     999999999999999999874 5677777777643 33466665


Q ss_pred             CC-eEEEEeCC----CcEEEEECCC
Q 012799          251 DG-VIYTGSQD----CTIKVWETTQ  270 (456)
Q Consensus       251 ~~-~l~~~~~d----g~i~iwd~~~  270 (456)
                      +- .|++.+.+    ..|++||.+.
T Consensus       225 n~~rlisTGF~~~R~reV~~~Dtr~  249 (1012)
T KOG1445|consen  225 NWERLISTGFTTKRIREVRAYDTRK  249 (1012)
T ss_pred             chhhhhhcccchhhheeeeeeeccc
Confidence            53 55554443    4688898764

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.92  E-value=1.8e-24  Score=171.08  Aligned_cols=286  Identities=21%  Similarity=0.270  Sum_probs=205.4

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  180 (456)
                      ..|++|.+.|+++.|..+++ |.+|..-|.|++|++.+......+. .+...|+.+.--|+ ..+.+-++|+.+.+|++.
T Consensus         8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia   85 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA   85 (323)
T ss_pred             eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence            34668999999999998876 8899999999999999988887777 67888999998887 578899999999999998


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCC----EEEEEeCCC-cEEEEECCCCeEEEEec----CcCccEEEEEeCCC
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCR----RFVSASKDG-DARIWDVSLRKCVICLS----GHTLAVTCVKWGGD  251 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~l~~~~~dg-~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~  251 (456)
                      .+..    ..-|.-.+.++-|.+..+...++    .++.-+... .+++-|......+....    +..+.+.|..+..+
T Consensus        86 ~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~  161 (323)
T KOG0322|consen   86 YSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA  161 (323)
T ss_pred             Ccce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence            7543    33345556666666643322221    112111110 12223332222222221    23456777775542


Q ss_pred             -C---eEEEEeCCCcEEEEECCCCeEEE----------EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799          252 -G---VIYTGSQDCTIKVWETTQGKLIR----------ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (456)
Q Consensus       252 -~---~l~~~~~dg~i~iwd~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (456)
                       +   .+++|..+|.+.+||+.++..+-          ....|..++.++.+.+.                         
T Consensus       162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-------------------------  216 (323)
T KOG0322|consen  162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-------------------------  216 (323)
T ss_pred             ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-------------------------
Confidence             2   67889999999999999984333          33456677777777653                         


Q ss_pred             HhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC--cc-ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799          318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP--KT-RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF  394 (456)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~-~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~  394 (456)
                                 -+.=++|+.+..+..|.+......  .. ...-....|..+..-||++.+||++.||+||||+.+++++
T Consensus       217 -----------~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p  285 (323)
T KOG0322|consen  217 -----------CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP  285 (323)
T ss_pred             -----------hcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc
Confidence                       122355666777888876654221  11 1112233478899999999999999999999999999999


Q ss_pred             EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       395 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +..++-|.+.|+++                           +|+||...+|++|.|++|.+|
T Consensus       286 LAVLkyHsagvn~v---------------------------Afspd~~lmAaaskD~rISLW  320 (323)
T KOG0322|consen  286 LAVLKYHSAGVNAV---------------------------AFSPDCELMAAASKDARISLW  320 (323)
T ss_pred             hhhhhhhhcceeEE---------------------------EeCCCCchhhhccCCceEEee
Confidence            99999999999999                           899999999999999999999

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=4.9e-23  Score=168.08  Aligned_cols=310  Identities=20%  Similarity=0.303  Sum_probs=210.1

Q ss_pred             ccccCCcccEEEEEECC-----CCCeEEEEECCCcEEEEeCCCCcceeEEe-----cCCCCEEEEEEcCC----CCEEEE
Q 012799          102 ATIAGHTEAVLSVAFSP-----DGRQLASGSGDTTVRLWDLNTQTPMFKCT-----GHKNWVLCIAWSAD----GKHLVS  167 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~-----~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~----~~~l~s  167 (456)
                      +...+|+.+|..++|++     .-..+|+.+.+ .+.+|......-+..++     .|......++|+-+    ..++|.
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            34467999999999985     23456666554 78999876544232222     46777888899863    458899


Q ss_pred             EeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCccEE
Q 012799          168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVT  244 (456)
Q Consensus       168 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~  244 (456)
                      ++.-|.|+|.|+.+++... .+.+|...|..+.+.|.    +.+++++++.|..|++|++++..++..+   .+|...|.
T Consensus       111 ~G~~GvIrVid~~~~~~~~-~~~ghG~sINeik~~p~----~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL  185 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSK-NYRGHGGSINEIKFHPD----RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL  185 (385)
T ss_pred             ecceeEEEEEecchhhhcc-ceeccCccchhhhcCCC----CCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence            9999999999999988776 78899999999999995    4479999999999999999999999887   57999999


Q ss_pred             EEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCC--hHHHHHHHHhhh
Q 012799          245 CVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS--PEEMKKAALERY  321 (456)
Q Consensus       245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  321 (456)
                      ++.|+++| ++++++.|.++++|++...+....+.      .++.++|+....-..  .....+..  .....+...+..
T Consensus       186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE------~s~~~~~~~t~~pfp--t~~~~fp~fst~diHrnyVDCv  257 (385)
T KOG1034|consen  186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE------LSITYSPNKTTRPFP--TPKTHFPDFSTTDIHRNYVDCV  257 (385)
T ss_pred             EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh------hhcccCCCCccCcCC--ccccccccccccccccchHHHH
Confidence            99999999 99999999999999998543222221      112222221110000  00000000  000000000000


Q ss_pred             hhccCCCCCEEEEEeCCCcEEEEecCCCCCC-------------ccccccccccEeEE--EECCCCCEEEEEECCCcEEE
Q 012799          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-------------KTRMTGHQQLVNHV--YFSPDGQWVASASFDKSIKL  386 (456)
Q Consensus       322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~~v~~~--~~sp~~~~l~s~~~dg~i~i  386 (456)
                      ..    -++++++-+.++.|..|..-.-...             ...+.-....|.-+  +|.|-+++||.|...|.|.+
T Consensus       258 rw----~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v  333 (385)
T KOG1034|consen  258 RW----FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV  333 (385)
T ss_pred             HH----HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence            00    1467899899999999986211111             11111122334444  56677889999999999999


Q ss_pred             EeCCCCeEE--EEEe--cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          387 WNGTTGKFV--AVFR--GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       387 wd~~~~~~~--~~~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ||++..+..  .++.  .....|...                           +||.||..|+...+|++|.=|
T Consensus       334 wdL~~~ep~~~ttl~~s~~~~tVRQ~---------------------------sfS~dgs~lv~vcdd~~Vwrw  380 (385)
T KOG1034|consen  334 WDLDNNEPPKCTTLTHSKSGSTVRQT---------------------------SFSRDGSILVLVCDDGTVWRW  380 (385)
T ss_pred             EECCCCCCccCceEEeccccceeeee---------------------------eecccCcEEEEEeCCCcEEEE
Confidence            999886652  1222  112355555                           899999999999999998655

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=1.2e-22  Score=165.40  Aligned_cols=257  Identities=20%  Similarity=0.341  Sum_probs=199.8

Q ss_pred             EEEEEECCCCCeEEEEECCCcEEEEeCCCC-------c-----ceeEEe-cCCCCEEEEEEc-------CCCCEEEEEeC
Q 012799          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-------T-----PMFKCT-GHKNWVLCIAWS-------ADGKHLVSGSK  170 (456)
Q Consensus       111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~-------~-----~~~~~~-~~~~~v~~~~~~-------~~~~~l~s~~~  170 (456)
                      ...+.|+|||..|++-+.|..+++|++...       .     ...++. .....|..-+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            456899999999999999999999997431       0     011111 134457777775       57789999999


Q ss_pred             CCeEEEEeCCCCCCcccc-ccCccc---ceEEEEecccccCCCCCEEEEEeCCCcEEEEEC-CCCeEEE--E-----ecC
Q 012799          171 AGELQCWDPQTGKPSGNP-LSGHKK---WITGISWEPVHLNAPCRRFVSASKDGDARIWDV-SLRKCVI--C-----LSG  238 (456)
Q Consensus       171 dg~i~vwd~~~~~~~~~~-~~~~~~---~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~--~-----~~~  238 (456)
                      +.-|++||.-+|+..... ...|..   ...+++|+|     ||..|++|.. ..|+++|+ +.+....  .     ..+
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-----DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~g  205 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-----DGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFG  205 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecC-----CCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccccc
Confidence            999999999999865421 122333   345788998     9999887655 78999999 4443211  1     123


Q ss_pred             cCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799          239 HTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (456)
Q Consensus       239 ~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (456)
                      ..+-+.|++++|-.  .+++++...++-||.-..+.++..+.+|.+.|+.+.|.++                        
T Consensus       206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed------------------------  261 (406)
T KOG2919|consen  206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED------------------------  261 (406)
T ss_pred             ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC------------------------
Confidence            46779999999965  8899999999999998889999999999999999999998                        


Q ss_pred             HHhhhhhccCCCCCEEEEEeC-CCcEEEEecCCCCCCccccccccc-cEeEE--EECCCCCEEEEEECCCcEEEEeCCC-
Q 012799          317 ALERYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQ-LVNHV--YFSPDGQWVASASFDKSIKLWNGTT-  391 (456)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~--~~sp~~~~l~s~~~dg~i~iwd~~~-  391 (456)
                                  ++.|++|+. |-.|..||++....++..+..|.. .-..|  ...|++++|++|+.||.|++||+++ 
T Consensus       262 ------------Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~  329 (406)
T KOG2919|consen  262 ------------GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL  329 (406)
T ss_pred             ------------cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence                        556777765 778999999999988888887765 22233  4568899999999999999999998 


Q ss_pred             CeEEEEEecccccEEEEE
Q 012799          392 GKFVAVFRGHVGPVYQIR  409 (456)
Q Consensus       392 ~~~~~~~~~~~~~v~~i~  409 (456)
                      |..+..+..|...++.+.
T Consensus       330 gn~~sv~~~~sd~vNgvs  347 (406)
T KOG2919|consen  330 GNEVSVTGNYSDTVNGVS  347 (406)
T ss_pred             CCccccccccccccccee
Confidence            787888888999999993

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.91  E-value=1.4e-22  Score=170.09  Aligned_cols=293  Identities=26%  Similarity=0.363  Sum_probs=207.9

Q ss_pred             cccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCcc---------eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799          108 TEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTP---------MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (456)
Q Consensus       108 ~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  177 (456)
                      ..+|..+.|.++.. .+|||+.|..|++|.+..+..         +..+..|...|+++.|+|+|..||+|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            56899999999876 999999999999998865322         24567899999999999999999999999999999


Q ss_pred             eCC--------C-----C--CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc
Q 012799          178 DPQ--------T-----G--KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA  242 (456)
Q Consensus       178 d~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  242 (456)
                      ...        +     .  -.+.+.+.+|...|..++|.|     ++.++++++.|..+++||+..++....+..|...
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-----d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y  167 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-----DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY  167 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-----CCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence            876        2     1  112345678999999999999     9999999999999999999999999999999999


Q ss_pred             EEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee--------cCCcceEEEEecCcceeeeccccCCCCccCChHHH
Q 012799          243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK--------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (456)
Q Consensus       243 v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (456)
                      +..++|.|-+ ++++-+.|...+.+++...+.++...        .+...-....+..+..                   
T Consensus       168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeT-------------------  228 (434)
T KOG1009|consen  168 VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDET-------------------  228 (434)
T ss_pred             cceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCc-------------------
Confidence            9999999988 88888888877777776544333221        0111111111111110                   


Q ss_pred             HHHHHhhhhhccCCCCCEEEEEeC---------CCcEEEEecCCCCCCccccccccccEeEEEECC--------------
Q 012799          314 KKAALERYNKIKGNAPERLVSGSD---------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--------------  370 (456)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp--------------  370 (456)
                       ...+.+ ...+.+++..+++...         -+..++|+-..-..+...+..-..+...+.|+|              
T Consensus       229 -lksFFr-RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~  306 (434)
T KOG1009|consen  229 -LKSFFR-RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFL  306 (434)
T ss_pred             -hhhhhh-hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccc
Confidence             000111 1112244555554322         234466664334445555555555555555554              


Q ss_pred             ----CCCEEEEEECCCcEEEEeCCCCeEEEEEe-cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEE
Q 012799          371 ----DGQWVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL  445 (456)
Q Consensus       371 ----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  445 (456)
                          -+-.+|.++ ...|.+||.++..++.... -|-..++++                           +|++||..|+
T Consensus       307 ~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDi---------------------------aws~dg~~l~  358 (434)
T KOG1009|consen  307 FVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDI---------------------------AWSDDGSVLL  358 (434)
T ss_pred             cccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecce---------------------------eecCCCcEEE
Confidence                122345554 4579999999888776554 577888888                           9999999999


Q ss_pred             EeeCCCceE
Q 012799          446 SGSKDSTLK  454 (456)
Q Consensus       446 s~s~Dg~v~  454 (456)
                      ..|.||.+.
T Consensus       359 vSS~DGyCS  367 (434)
T KOG1009|consen  359 VSSTDGFCS  367 (434)
T ss_pred             EeccCCceE
Confidence            999999764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=1.3e-22  Score=180.60  Aligned_cols=271  Identities=19%  Similarity=0.333  Sum_probs=215.0

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  189 (456)
                      .|..++|-|||..|+.+..+ .+.+||.+.|..+.++++|.+.|+|++|+.||+.+++|+.|..|.+|+.+-...   ..
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---LK   89 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---ee
Confidence            89999999999988887544 799999999999999999999999999999999999999999999998654332   35


Q ss_pred             cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEEC
Q 012799          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWET  268 (456)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~  268 (456)
                      ..|...|.++.|+|     -...+++++- ...-+|.........  ......+.+++|..|| +++.|-.+|+|.+-+-
T Consensus        90 YSH~D~IQCMsFNP-----~~h~LasCsL-sdFglWS~~qK~V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk  161 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNP-----ITHQLASCSL-SDFGLWSPEQKSVSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNK  161 (1081)
T ss_pred             eccCCeeeEeecCc-----hHHHhhhcch-hhccccChhhhhHHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence            67999999999999     4467887776 346678765433221  1235678899999999 9999999999998864


Q ss_pred             CCCeEEEEee---cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEe
Q 012799          269 TQGKLIRELK---GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (456)
Q Consensus       269 ~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  345 (456)
                      . ++..-.+.   +.+++|.+++|+|....                               ...+.+++.....++.+|.
T Consensus       162 ~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~-------------------------------G~~di~aV~DW~qTLSFy~  209 (1081)
T KOG1538|consen  162 N-GEEKVKIERPGGSNSPIWSICWNPSSGE-------------------------------GRNDILAVADWGQTLSFYQ  209 (1081)
T ss_pred             C-CCcceEEeCCCCCCCCceEEEecCCCCC-------------------------------CccceEEEEeccceeEEEE
Confidence            3 44333333   47789999999997321                               1245688888888898888


Q ss_pred             cCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceee
Q 012799          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV  425 (456)
Q Consensus       346 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~  425 (456)
                      +...  .+.+-..-.-...|+.+.|+|.++..|+.|+.+++|- +.|-.+.++......|+.+                 
T Consensus       210 LsG~--~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV-----------------  269 (1081)
T KOG1538|consen  210 LSGK--QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTV-----------------  269 (1081)
T ss_pred             ecce--eecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEE-----------------
Confidence            6432  2222222233467899999999999999999999997 6788888888788899999                 


Q ss_pred             ecccccccceeEecCCCeEEEeeCCCceE
Q 012799          426 VDMSCCMSLYSWSADSRLLLSGSKDSTLK  454 (456)
Q Consensus       426 ~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~  454 (456)
                                +..|++++++.|..||+|.
T Consensus       270 ----------~~~PNsQ~v~~GCqDGTiA  288 (1081)
T KOG1538|consen  270 ----------QAKPNSQYVVVGCQDGTIA  288 (1081)
T ss_pred             ----------EEccCCceEEEEEccCeee
Confidence                      8899999999999999974

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-22  Score=174.81  Aligned_cols=260  Identities=16%  Similarity=0.208  Sum_probs=204.2

Q ss_pred             EEEEEECCCCCe-EEEEECCCcEEEEeCCCC--cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799          111 VLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (456)
Q Consensus       111 V~~~~~s~~~~~-l~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  187 (456)
                      +.++.|+....+ +|+.+.|..|++|.-...  +....-......-.|++......++++|+..+.|+|||++ .+.+.+
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr  115 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLR-AKLIHR  115 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhH-HHHHhh
Confidence            899999987642 334457889999975433  1111111122244556655566899999999999999999 445556


Q ss_pred             cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc-CccEEEEEeCCCC--eEEEEeCCCcEE
Q 012799          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDG--VIYTGSQDCTIK  264 (456)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~--~l~~~~~dg~i~  264 (456)
                      .+.+|...|+++.|..     ...+|++++..|.|.|..+.++.....+... ...|.-+.+++..  .|.+++.+|.|.
T Consensus       116 ~lkdh~stvt~v~YN~-----~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt  190 (673)
T KOG4378|consen  116 FLKDHQSTVTYVDYNN-----TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT  190 (673)
T ss_pred             hccCCcceeEEEEecC-----CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence            8999999999999987     7789999999999999999988877777544 4556789999876  788899999999


Q ss_pred             EEECCCCeEEEEe-ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEE
Q 012799          265 VWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (456)
Q Consensus       265 iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  343 (456)
                      +||+....++..+ ..|..+...++|+|..                                   ...|++.+.|..|.+
T Consensus       191 lwDv~g~sp~~~~~~~HsAP~~gicfspsn-----------------------------------e~l~vsVG~Dkki~~  235 (673)
T KOG4378|consen  191 LWDVQGMSPIFHASEAHSAPCRGICFSPSN-----------------------------------EALLVSVGYDKKINI  235 (673)
T ss_pred             EEeccCCCcccchhhhccCCcCcceecCCc-----------------------------------cceEEEecccceEEE
Confidence            9999887776655 5688999999999974                                   446899999999999


Q ss_pred             EecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC-CeEEEEEecccccEEEEEeeee
Q 012799          344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELI  413 (456)
Q Consensus       344 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~  413 (456)
                      ||.+.........  -..+.+.++|+++|.+|+.|+..|.|..||++. ..++.++..|...|++++|...
T Consensus       236 yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  236 YDIRSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             eecccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence            9977544333222  345689999999999999999999999999987 5678899999999999977543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=7.4e-23  Score=169.98  Aligned_cols=203  Identities=21%  Similarity=0.351  Sum_probs=168.7

Q ss_pred             ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC----------------CCeEEEEecCcCccEEEEEeCC--
Q 012799          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS----------------LRKCVICLSGHTLAVTCVKWGG--  250 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----------------~~~~~~~~~~~~~~v~~~~~~~--  250 (456)
                      ..+|.+.+..+.-.+..   +..+.++-+..|.|+|||+.                ..+++.++.+|...=..++|+|  
T Consensus       147 ~i~h~g~~NRvr~~~~~---~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~  223 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLG---NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK  223 (440)
T ss_pred             ccccccccceeeecccC---CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence            44566777777666633   44566777889999999974                2356788899999999999999  


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeEE---EEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799          251 DGVIYTGSQDCTIKVWETTQGKLI---RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (456)
Q Consensus       251 ~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (456)
                      .|.|++|..-+.|++|...++.-.   ..+.+|...|..++|+|..                                  
T Consensus       224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE----------------------------------  269 (440)
T KOG0302|consen  224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE----------------------------------  269 (440)
T ss_pred             ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCcc----------------------------------
Confidence            448999999999999999887543   3456799999999999973                                  


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCC-CCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC---CeEEEEEecccc
Q 012799          328 APERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT---GKFVAVFRGHVG  403 (456)
Q Consensus       328 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~  403 (456)
                       ...|++|+.||+|+|||++... ......+.|.+.|+.+.|+.+-.+||+|+.||+++|||++.   ++++..|+.|..
T Consensus       270 -~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~  348 (440)
T KOG0302|consen  270 -DGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA  348 (440)
T ss_pred             -CceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence             5569999999999999998873 33344588999999999999888999999999999999986   678999999999


Q ss_pred             cEEEEEeeeeeeecCCCCceeeecccccccceeEecCC-CeEEEeeCCCceEEC
Q 012799          404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVT  456 (456)
Q Consensus       404 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~s~s~Dg~v~iW  456 (456)
                      +|+++                           .|+|.. ..|+++|.|..|.||
T Consensus       349 pItsi---------------------------eW~p~e~s~iaasg~D~QitiW  375 (440)
T KOG0302|consen  349 PITSI---------------------------EWHPHEDSVIAASGEDNQITIW  375 (440)
T ss_pred             CeeEE---------------------------EeccccCceEEeccCCCcEEEE
Confidence            99999                           899854 588889999999999

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=5.5e-23  Score=176.68  Aligned_cols=222  Identities=17%  Similarity=0.245  Sum_probs=188.9

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  189 (456)
                      .-.|++......++++|+..+.|+|||++.....+.+.+|...|+++.++....+||+++..|.|.|..+.++.......
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~  160 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT  160 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence            33455555555899999999999999999877888899999999999999999999999999999999999887665333


Q ss_pred             cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCcCccEEEEEeCCCC--eEEEEeCCCcEEEE
Q 012799          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAVTCVKWGGDG--VIYTGSQDCTIKVW  266 (456)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iw  266 (456)
                      .+....|.-+.|+|.    ...+|.+++.+|.|.+||+....++..+ +.|..+...++|+|.+  .|++.+.|..|.+|
T Consensus       161 ~~sgqsvRll~ys~s----kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~y  236 (673)
T KOG4378|consen  161 IDSGQSVRLLRYSPS----KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIY  236 (673)
T ss_pred             cCCCCeEEEeecccc----cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEe
Confidence            333455678899884    3346778999999999999988877665 6799999999999977  88999999999999


Q ss_pred             ECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEec
Q 012799          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (456)
Q Consensus       267 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  346 (456)
                      |.+..+....+. ...+...++|.++                                    |.+|++|...|.|..||+
T Consensus       237 D~~s~~s~~~l~-y~~Plstvaf~~~------------------------------------G~~L~aG~s~G~~i~YD~  279 (673)
T KOG4378|consen  237 DIRSQASTDRLT-YSHPLSTVAFSEC------------------------------------GTYLCAGNSKGELIAYDM  279 (673)
T ss_pred             ecccccccceee-ecCCcceeeecCC------------------------------------ceEEEeecCCceEEEEec
Confidence            999877666665 4567889999988                                    566999999999999999


Q ss_pred             CCCCCCccccccccccEeEEEECCCC
Q 012799          347 AVSKQPKTRMTGHQQLVNHVYFSPDG  372 (456)
Q Consensus       347 ~~~~~~~~~~~~~~~~v~~~~~sp~~  372 (456)
                      +..+.++.....|...|++++|-|..
T Consensus       280 R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  280 RSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ccCCCCceEeeecccceeEEEeeecc
Confidence            99999999999999999999998764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=2.4e-22  Score=171.10  Aligned_cols=217  Identities=20%  Similarity=0.314  Sum_probs=171.4

Q ss_pred             EeCCCCcceeEEecCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCCC---ccccccCcccceEEEEecccccCCC
Q 012799          135 WDLNTQTPMFKCTGHKNWVLCIAWSADG--KHLVSGSKAGELQCWDPQTGKP---SGNPLSGHKKWITGISWEPVHLNAP  209 (456)
Q Consensus       135 wd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~  209 (456)
                      .|+..-.......-+.++|++++|+|..  +.+|+|..-|.|-+||+.+.+.   -......|..+|.++.|+|.    +
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~----n  246 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA----N  246 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC----C
Confidence            3344444455566789999999999954  5888999999999999963332   22246789999999999996    4


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEE--EEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeE-EEEeecCCcceE
Q 012799          210 CRRFVSASKDGDARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVN  285 (456)
Q Consensus       210 ~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~  285 (456)
                      ...+++.+.||+|++-|++.....  .........+..+.++.+. .++.+..=|...+||++++.. ...+..|...|+
T Consensus       247 ~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~  326 (498)
T KOG4328|consen  247 TSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT  326 (498)
T ss_pred             hhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence            568999999999999999876433  2333345567788888766 777777777999999998765 666677888999


Q ss_pred             EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC---Ccccccccccc
Q 012799          286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQL  362 (456)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~  362 (456)
                      +++++|..                                   ..++++++.|++.+|||++.-..   +......|...
T Consensus       327 sv~~NP~~-----------------------------------p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs  371 (498)
T KOG4328|consen  327 SVALNPVC-----------------------------------PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS  371 (498)
T ss_pred             eeecCCCC-----------------------------------chheeecccCcceeeeehhhhcCCCCcceecccccce
Confidence            99999974                                   55799999999999999876432   23445689999


Q ss_pred             EeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          363 VNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       363 v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                      |.+..|||.+-.|++.+.|..|+|||..
T Consensus       372 V~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  372 VNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             eeeeEEcCCCCceEeeccCCceEEeecc
Confidence            9999999987779999999999999983

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=4.3e-20  Score=173.78  Aligned_cols=263  Identities=37%  Similarity=0.651  Sum_probs=215.4

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-ceeEEecCCC-CEEEEEE-cCCCC-EEEEEeC-CCeEEEE
Q 012799          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-PMFKCTGHKN-WVLCIAW-SADGK-HLVSGSK-AGELQCW  177 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~-~l~s~~~-dg~i~vw  177 (456)
                      .+.+|...|.++.+.+.+..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            467899999999999999999999999999999998876 6666666443 7777777 78887 5555444 9999999


Q ss_pred             eCCC-CCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799          178 DPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (456)
Q Consensus       178 d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l  254 (456)
                      +... .... .....|...|..++|+|     ++..+++++. |+.+++|++..+..+..+.+|...+.+++|+|++ .+
T Consensus       140 ~~~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  213 (466)
T COG2319         140 DLSTPGKLI-RTLEGHSESVTSLAFSP-----DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLL  213 (466)
T ss_pred             EecCCCeEE-EEEecCcccEEEEEECC-----CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceE
Confidence            9987 3333 36788999999999999     7778888885 9999999999988899998999999999999988 35


Q ss_pred             EEE-eCCCcEEEEECCCCeEEE-EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799          255 YTG-SQDCTIKVWETTQGKLIR-ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (456)
Q Consensus       255 ~~~-~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (456)
                      +++ +.|+.+++||...+..+. .+..|.... ...++++                                    +..+
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~------------------------------------~~~~  256 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD------------------------------------GSLL  256 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC------------------------------------CCEE
Confidence            554 899999999998887777 577676664 3366666                                    3458


Q ss_pred             EEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe--cccccEEEE
Q 012799          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR--GHVGPVYQI  408 (456)
Q Consensus       333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i  408 (456)
                      ++++.|+.+++|+............+|...+.++.|+|++..+++++.|+.+++||..+........  .|...+..+
T Consensus       257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (466)
T COG2319         257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL  334 (466)
T ss_pred             EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEE
Confidence            8999999999999876655233336788999999999988888889999999999999888777665  777778777

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.4e-21  Score=158.97  Aligned_cols=205  Identities=20%  Similarity=0.326  Sum_probs=155.7

Q ss_pred             eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc---cccCcccceEEEEecccccCCCCCEEEE-EeCC
Q 012799          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVS-ASKD  219 (456)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~-~~~d  219 (456)
                      ..+++|.+.|++++|+.||++|++++.|+.|++|+++.......   ...-.-+..+.+.|.|     |.+-++. .-..
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap-----Dc~s~vv~~~~g  154 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP-----DCKSVVVSVKRG  154 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC-----CcceEEEEEccC
Confidence            34679999999999999999999999999999999986432110   0111123457888998     5555544 4455


Q ss_pred             CcEEEEECCCCe---EE---------EEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEE
Q 012799          220 GDARIWDVSLRK---CV---------ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNS  286 (456)
Q Consensus       220 g~i~iwd~~~~~---~~---------~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  286 (456)
                      .++++|-+...+   ..         ..-+.|+..+..+-.-..+ ++++++.|..|.+|+++ |+.+..+......-..
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~  233 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD  233 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence            679998764321   11         0112456666666666666 89999999999999999 8999988877777777


Q ss_pred             EEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-------CCccccccc
Q 012799          287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-------QPKTRMTGH  359 (456)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~  359 (456)
                      .+++|+                                    +.++++++---.+++|.+--.+       .....+.+|
T Consensus       234 aavSP~------------------------------------GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH  277 (420)
T KOG2096|consen  234 AAVSPD------------------------------------GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH  277 (420)
T ss_pred             eeeCCC------------------------------------CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc
Confidence            888888                                    5669999999999999854322       234567899


Q ss_pred             cccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                      ...|..++|||+++.+++.+.||++++||+.
T Consensus       278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             hhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            9999999999999999999999999999975

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4.7e-22  Score=163.26  Aligned_cols=268  Identities=17%  Similarity=0.221  Sum_probs=191.9

Q ss_pred             CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCCCccccc-cCcc-cce
Q 012799          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNPL-SGHK-KWI  196 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~-~~v  196 (456)
                      ..+|++...|.|++||..+++.+..++++...+..+.|..  ....+.+|+.||+|++||++......+.. ..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688888999999999999999999999999999999987  56789999999999999999877655433 3333 234


Q ss_pred             EEEEecccccCCCCCEEEEEeC----CCcEEEEECCCCeE-EEEe-cCcCccEEEEEeCCCC--eEEEEeCCCcEEEEEC
Q 012799          197 TGISWEPVHLNAPCRRFVSASK----DGDARIWDVSLRKC-VICL-SGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWET  268 (456)
Q Consensus       197 ~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~  268 (456)
                      .+++-..     .++.+++|+.    +-.|.+||++..+. +..+ ..|...|+++.|+|..  +|++|+.||.|.+||+
T Consensus       121 ~~ld~nc-----k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  121 ICLDLNC-----KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             eEeeccC-----cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            4444332     5677777754    67899999998776 4444 5799999999999977  9999999999999999


Q ss_pred             CCCe---EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEe
Q 012799          269 TQGK---LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (456)
Q Consensus       269 ~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  345 (456)
                      ....   .+...-.+...|..+.|..+.                                   -+.+.+-+..++..+|+
T Consensus       196 ~~d~EeDaL~~viN~~sSI~~igw~~~~-----------------------------------ykrI~clTH~Etf~~~e  240 (376)
T KOG1188|consen  196 KKDNEEDALLHVINHGSSIHLIGWLSKK-----------------------------------YKRIMCLTHMETFAIYE  240 (376)
T ss_pred             CCCcchhhHHHhhcccceeeeeeeecCC-----------------------------------cceEEEEEccCceeEEE
Confidence            7642   122222366778888887652                                   23588889999999999


Q ss_pred             cCCCCCCcccccc-----------ccccEeEEEECC-CCCEEEEEEC-CCcEEEEeCC---C---CeEEEEEec-ccccE
Q 012799          346 PAVSKQPKTRMTG-----------HQQLVNHVYFSP-DGQWVASASF-DKSIKLWNGT---T---GKFVAVFRG-HVGPV  405 (456)
Q Consensus       346 ~~~~~~~~~~~~~-----------~~~~v~~~~~sp-~~~~l~s~~~-dg~i~iwd~~---~---~~~~~~~~~-~~~~v  405 (456)
                      +..+......-..           ....+-. +.+| ++...+.++. -|...++-+.   +   ++.+..+.+ |...|
T Consensus       241 le~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiV  319 (376)
T KOG1188|consen  241 LEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIV  319 (376)
T ss_pred             ccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHH
Confidence            8766532211111           0111111 1234 4455555544 4555555333   3   334555665 66677


Q ss_pred             EEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       406 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .++                           .|...+.++.|||+||.+.+|
T Consensus       320 R~i---------------------------~~~~~~~~l~TGGEDG~l~~W  343 (376)
T KOG1188|consen  320 RDI---------------------------LFDVKNDVLYTGGEDGLLQAW  343 (376)
T ss_pred             HHH---------------------------hhhcccceeeccCCCceEEEE
Confidence            777                           778888999999999999999

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=6.2e-23  Score=193.51  Aligned_cols=246  Identities=24%  Similarity=0.389  Sum_probs=200.0

Q ss_pred             cccEEEEEECCCCCe----EEEEECCCcEEEEeCCCC------cceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 012799          108 TEAVLSVAFSPDGRQ----LASGSGDTTVRLWDLNTQ------TPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQC  176 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~----l~~~~~d~~v~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~v  176 (456)
                      ...-+.++|.+.|..    ||.|..||.|.+||...-      ..+.+...|.+.|..+.|++. +++||+|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            445678999997765    888899999999998652      345667789999999999995 559999999999999


Q ss_pred             EeCCCCCCcccc-ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc--cEEEEEeCCCC-
Q 012799          177 WDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL--AVTCVKWGGDG-  252 (456)
Q Consensus       177 wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~-  252 (456)
                      ||+++-+..... .......|.+++|+..    ....|++++.+|.+.|||++..+.+..+..+..  .+..++|+|++ 
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrk----vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a  219 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRK----VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA  219 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchh----hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence            999886544322 2235678999999873    345788999999999999999988888766554  47889999998 


Q ss_pred             -eEEEEeCCC---cEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799          253 -VIYTGSQDC---TIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (456)
Q Consensus       253 -~l~~~~~dg---~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (456)
                       .+++++.|.   .|.+||+|.- .+++++.+|...|.++.|++.                                   
T Consensus       220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~-----------------------------------  264 (1049)
T KOG0307|consen  220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ-----------------------------------  264 (1049)
T ss_pred             eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCC-----------------------------------
Confidence             777777654   5999999864 577888899999999999987                                   


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCC-EEEEEECCCcEEEEeCCCCe
Q 012799          328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTGK  393 (456)
Q Consensus       328 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~  393 (456)
                      +..++++++.|+.|.+|+..+++ .+..+....+++..+.|+|... .++.++-||.|.||.+..+.
T Consensus       265 D~~lllSsgkD~~ii~wN~~tgE-vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  265 DPRLLLSSGKDNRIICWNPNTGE-VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CchhhhcccCCCCeeEecCCCce-EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            35679999999999999977654 4555666778999999999655 78899999999999987654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.89  E-value=5.4e-21  Score=153.56  Aligned_cols=260  Identities=22%  Similarity=0.332  Sum_probs=198.6

Q ss_pred             CCCcEEEEeCCCCcc---eeEEecCCCCEEEEEEcC-CCCEEEEEeCC-------CeEEEEeCCCCCC---------ccc
Q 012799          128 GDTTVRLWDLNTQTP---MFKCTGHKNWVLCIAWSA-DGKHLVSGSKA-------GELQCWDPQTGKP---------SGN  187 (456)
Q Consensus       128 ~d~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d-------g~i~vwd~~~~~~---------~~~  187 (456)
                      .|+.|.+.+++....   ...+..|.+.|..++-+| +.+.|+++..+       ..+.||.+.....         +..
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            467888887765432   234556889999999999 55566666542       2478998864322         221


Q ss_pred             cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE-EEEe-----cCcCccEEEEEeCC--CCeEEEEeC
Q 012799          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICL-----SGHTLAVTCVKWGG--DGVIYTGSQ  259 (456)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~-----~~~~~~v~~~~~~~--~~~l~~~~~  259 (456)
                      .-..+-+.|.++.|.|     ++..+++.. |..|.+|++..+.. +..+     .++....++-+|+|  ++.-+....
T Consensus       118 Ldteavg~i~cvew~P-----ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~  191 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEP-----NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS  191 (370)
T ss_pred             CCHHHhCceeeEEEcC-----CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence            2234556899999999     778888776 78999999987655 2222     23466788889998  456667788


Q ss_pred             CCcEEEEECCCCeEEEEe-ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799          260 DCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (456)
Q Consensus       260 dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (456)
                      |+++..||+++.+....+ ..|...+..+.|+|+-                                   ..+|+++++|
T Consensus       192 d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk-----------------------------------q~~lvt~gDd  236 (370)
T KOG1007|consen  192 DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNK-----------------------------------QHILVTCGDD  236 (370)
T ss_pred             CCcEEEEEccchhhhcchhhhhcceeeeccCCCCc-----------------------------------eEEEEEcCCC
Confidence            999999999998777666 4588899999999983                                   4569999999


Q ss_pred             CcEEEEecCCCCCCccccccccccEeEEEECC-CCCEEEEEECCCcEEEEeCCCC-------------------------
Q 012799          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG-------------------------  392 (456)
Q Consensus       339 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~-------------------------  392 (456)
                      |.|++||.+..+.++..+.+|...|.++.|+| ..++|.+|+.|..|.+|...+-                         
T Consensus       237 gyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~k  316 (370)
T KOG1007|consen  237 GYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVK  316 (370)
T ss_pred             ccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcc
Confidence            99999999999999999999999999999999 4677999999999999964311                         


Q ss_pred             ----eEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEeeCCCceEE
Q 012799          393 ----KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKV  455 (456)
Q Consensus       393 ----~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s~Dg~v~i  455 (456)
                          ..+.++..|.+.|+++                           +||.-.. .+|+-|.||++.|
T Consensus       317 pL~dg~l~tydehEDSVY~~---------------------------aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  317 PLQDGQLETYDEHEDSVYAL---------------------------AWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             cccccccccccccccceEEE---------------------------eeccCCCeeEEEeccCceEEe
Confidence                1234667788888888                           8876555 5677899999865

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.1e-21  Score=164.53  Aligned_cols=271  Identities=14%  Similarity=0.211  Sum_probs=204.7

Q ss_pred             CcccEEEEEEeccceEEE----------e----ecccccccccCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCc
Q 012799           77 SVEKVLSIVYQPQAVFRI----------R----PVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQT  141 (456)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~----------~----~~~~~~~~l~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~  141 (456)
                      +...+..+.|+|.....+          .    ..+..++.+.--..+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            345567788888653322          1    12334566666778999999999998 89999999999999998876


Q ss_pred             cee--EEecCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799          142 PMF--KCTGHK-NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (456)
Q Consensus       142 ~~~--~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~  218 (456)
                      ...  ...++. ..+.....++++++|+..|..|.|.+....+++.+.  ...-.+.|..++|+.     ++..|++.+.
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~--s~KieG~v~~~~fsS-----dsk~l~~~~~  364 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT--SFKIEGVVSDFTFSS-----DSKELLASGG  364 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh--eeeeccEEeeEEEec-----CCcEEEEEcC
Confidence            433  333443 457788899999999999999999999999888764  334567899999987     8899999999


Q ss_pred             CCcEEEEECCCCeEEEEecCcC-ccEEEEEeCCCC-eEEEEeCCCcEEEEECCC------CeEEEEeecCCcceEEEEec
Q 012799          219 DGDARIWDVSLRKCVICLSGHT-LAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ------GKLIRELKGHGHWVNSLALS  290 (456)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~i~~~~~~  290 (456)
                      +|.|++||++...++..+.... -.-+.++.++++ +|++|+..|.|.|||..+      .+++..+..-...|+++.|+
T Consensus       365 ~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn  444 (514)
T KOG2055|consen  365 TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN  444 (514)
T ss_pred             CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence            9999999999999998886322 234567777888 999999999999999654      45677777777889999999


Q ss_pred             CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe--CCCcEEEEecCCCCCCcc--ccccccccEeEE
Q 012799          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS--DDFTMFLWEPAVSKQPKT--RMTGHQQLVNHV  366 (456)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~  366 (456)
                      ++..+                                    ++.++  .+..+++-.+........  .....-+.|+|+
T Consensus       445 ~d~qi------------------------------------LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~  488 (514)
T KOG2055|consen  445 HDAQI------------------------------------LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM  488 (514)
T ss_pred             cchhh------------------------------------hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEE
Confidence            98443                                    44433  455677666433211000  012233569999


Q ss_pred             EECCCCCEEEEEECCCcEEEEeCC
Q 012799          367 YFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       367 ~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                      +|||.|.+||.|..+|.+.+|.+.
T Consensus       489 aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  489 AFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EecCCCceEEeecCCCceeeEeec
Confidence            999999999999999999999874

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.89  E-value=2.3e-21  Score=155.61  Aligned_cols=250  Identities=21%  Similarity=0.357  Sum_probs=194.2

Q ss_pred             cccccCCcccEEEEEECCC-CCeEEEEECC-------CcEEEEeCCCCc---------ceeEEe-cCCCCEEEEEEcCCC
Q 012799          101 SATIAGHTEAVLSVAFSPD-GRQLASGSGD-------TTVRLWDLNTQT---------PMFKCT-GHKNWVLCIAWSADG  162 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~-~~~l~~~~~d-------~~v~vwd~~~~~---------~~~~~~-~~~~~v~~~~~~~~~  162 (456)
                      ...|..|.+.|..++-+|. .+.|+++..+       -.+.||.+....         .+..+. .+-+.|.|+.|.|++
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence            4667889999999999995 4566666432       247899886432         223333 455689999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCc-ccc----ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-
Q 012799          163 KHLVSGSKAGELQCWDPQTGKPS-GNP----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-  236 (456)
Q Consensus       163 ~~l~s~~~dg~i~vwd~~~~~~~-~~~----~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-  236 (456)
                      ..+++-. |..|.+|+++.+..+ ...    ...+....++-+|+|.+   +++.+++.+ |++++.||+++.++...+ 
T Consensus       136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH---dgnqv~tt~-d~tl~~~D~RT~~~~~sI~  210 (370)
T KOG1007|consen  136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH---DGNQVATTS-DSTLQFWDLRTMKKNNSIE  210 (370)
T ss_pred             CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCC---ccceEEEeC-CCcEEEEEccchhhhcchh
Confidence            9998876 789999999887652 211    22356667888999977   787777665 689999999998887776 


Q ss_pred             cCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHH
Q 012799          237 SGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (456)
Q Consensus       237 ~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (456)
                      .+|...|..+.|+|+.  .|++|+.||.|++||.+.- .+++++.+|..++.++.|+|..                    
T Consensus       211 dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h--------------------  270 (370)
T KOG1007|consen  211 DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH--------------------  270 (370)
T ss_pred             hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc--------------------
Confidence            4688899999999987  8999999999999999864 5788999999999999999974                    


Q ss_pred             HHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC----------------------------CCccccccccccEeE
Q 012799          314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK----------------------------QPKTRMTGHQQLVNH  365 (456)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------------------------~~~~~~~~~~~~v~~  365 (456)
                                     .+++++|+.|..|.+|-.....                            ..+..+..|+..|.+
T Consensus       271 ---------------dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~  335 (370)
T KOG1007|consen  271 ---------------DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA  335 (370)
T ss_pred             ---------------ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEE
Confidence                           5678899999999888532110                            122345679999999


Q ss_pred             EEECCCCCE-EEEEECCCcEEEEeCC
Q 012799          366 VYFSPDGQW-VASASFDKSIKLWNGT  390 (456)
Q Consensus       366 ~~~sp~~~~-l~s~~~dg~i~iwd~~  390 (456)
                      ++||.-..+ +|+-+.||++.|=.+.
T Consensus       336 ~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  336 LAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             EeeccCCCeeEEEeccCceEEeecCC
Confidence            999986665 7788999999887654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.89  E-value=4.4e-23  Score=187.81  Aligned_cols=277  Identities=23%  Similarity=0.381  Sum_probs=213.5

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      .++.|.||..+|+|+.|...|.++++|+.|..++||..+++.++..+.||.+.|+.++.+.+..++++++.|..|++|.+
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE---ec-CcCccEEEEEeCCCC-eE
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC---LS-GHTLAVTCVKWGGDG-VI  254 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~-~~~~~v~~~~~~~~~-~l  254 (456)
                      ..+.++. .+.+|.+.|++++|+|         +.+.+.||++++||.+-.-.+..   .+ .....+..+.+...+ .+
T Consensus       262 ~~~~pvs-vLrghtgavtaiafsP---------~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f  331 (1113)
T KOG0644|consen  262 PDGAPVS-VLRGHTGAVTAIAFSP---------RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF  331 (1113)
T ss_pred             CCCchHH-HHhccccceeeeccCc---------cccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence            9999886 7899999999999999         34788999999999871111111   00 122445566666666 88


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      .+++.|+.-..|....-..      +...+.-+..+.+                                   ...+.++
T Consensus       332 ~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd-----------------------------------~~~~~~~  370 (1113)
T KOG0644|consen  332 LTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSD-----------------------------------LSSIVVT  370 (1113)
T ss_pred             ccccCCcccccchhhHhhh------hccceEEEecccc-----------------------------------cccccee
Confidence            9999999888887643211      0000111111101                                   0233667


Q ss_pred             EeCCCcEEEEecCCCCCCccccccccccEeEEEECCC-CCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeee
Q 012799          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI  413 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  413 (456)
                      +-.+-.+.+|++..+. ....+.+|...+..+.++|- .+...+++.||...|||+-.|.+++.+.-....+..-     
T Consensus       371 ar~~~~~~vwnl~~g~-l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~-----  444 (1113)
T KOG0644|consen  371 ARNDHRLCVWNLYTGQ-LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDG-----  444 (1113)
T ss_pred             eeeeeEeeeeecccch-hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeecc-----
Confidence            7778889999976654 45567789999999999994 4556689999999999999998877655323344444     


Q ss_pred             eeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                                            +||+||..++....-|.++|
T Consensus       445 ----------------------kFSqdgts~~lsd~hgql~i  464 (1113)
T KOG0644|consen  445 ----------------------KFSQDGTSIALSDDHGQLYI  464 (1113)
T ss_pred             ----------------------ccCCCCceEecCCCCCceEE
Confidence                                  78999998888888887776

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.4e-22  Score=175.60  Aligned_cols=258  Identities=19%  Similarity=0.336  Sum_probs=196.1

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC--------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  173 (456)
                      .++..|.+.|+.++|.|-...|++++.||++++|+++.        -+++.++.+|.++|.|+++.+++..+++|+.||+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            47888999999999999999999999999999999932        2567889999999999999999999999999999


Q ss_pred             EEEEeCCCCC---------CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC--cCcc
Q 012799          174 LQCWDPQTGK---------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--HTLA  242 (456)
Q Consensus       174 i~vwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~  242 (456)
                      |+.|++....         .....+.+|...|+.+++++     ....|++++.||+++.|+.....+ .++..  ..+.
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-----~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-----TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecc-----cccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence            9999654221         23346789999999999998     667899999999999999876665 23321  2233


Q ss_pred             EEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecC-------CcceEEEEecCcceeeeccccCCCCccCChHHH
Q 012799          243 VTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGH-------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (456)
Q Consensus       243 v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (456)
                      -..+.+....  ..++...-+.--++++.....+..+...       ...+.-+.++|.                     
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~---------------------  500 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT---------------------  500 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC---------------------
Confidence            3455554433  3334344444445555554444444321       123445555555                     


Q ss_pred             HHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe
Q 012799          314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (456)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~  393 (456)
                                     ..+.+++..|+.|+++|..+ ..++.....|...++++++.|+|.+|++|+.||.+++|.+....
T Consensus       501 ---------------~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  501 ---------------ADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             ---------------CCeeEecccCCceecccccc-cccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence                           45689999999999999554 45666778899999999999999999999999999999998777


Q ss_pred             EEEEEeccc
Q 012799          394 FVAVFRGHV  402 (456)
Q Consensus       394 ~~~~~~~~~  402 (456)
                      ++.....|.
T Consensus       565 ~~~es~~~r  573 (577)
T KOG0642|consen  565 CVLESTAHR  573 (577)
T ss_pred             eeecccccc
Confidence            766655553

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=3.4e-22  Score=163.25  Aligned_cols=245  Identities=20%  Similarity=0.319  Sum_probs=187.7

Q ss_pred             CCcccEEEEEECCC----CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q 012799          106 GHTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       106 ~h~~~V~~~~~s~~----~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~  180 (456)
                      .|.+.-..++|+-+    ..++|.|+.-|.|+|.|+.+++....+.+|...|+.+.+.|+ .+++++++.|..|++|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            47888899999864    348899999999999999999999999999999999999995 5799999999999999999


Q ss_pred             CCCCccc--cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEE-------------------------
Q 012799          181 TGKPSGN--PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-------------------------  233 (456)
Q Consensus       181 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------------------------  233 (456)
                      +..++..  -..+|...|.++.|++     +|.+++++|.|.++++|++...+..                         
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~-----~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f  241 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSL-----DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF  241 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcC-----CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence            9987652  2568999999999999     9999999999999999998732210                         


Q ss_pred             E---EecCcCccEEEEEeCCCCeEEEEeCCCcEEEEEC-CCCeEEE-------------EeecCCcceEEEEecCcceee
Q 012799          234 I---CLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET-TQGKLIR-------------ELKGHGHWVNSLALSTEYALR  296 (456)
Q Consensus       234 ~---~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~  296 (456)
                      .   +-.-|...|-|+.|-.+ .+++-+-++.|..|.. +-++.+.             .+......|.-+.|.-+    
T Consensus       242 p~fst~diHrnyVDCvrw~gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d----  316 (385)
T KOG1034|consen  242 PDFSTTDIHRNYVDCVRWFGD-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD----  316 (385)
T ss_pred             ccccccccccchHHHHHHHhh-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeec----
Confidence            0   11236667777777764 7888888899999987 2222222             22222222333333222    


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc---ccccEeEEEECCCCC
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG---HQQLVNHVYFSPDGQ  373 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~sp~~~  373 (456)
                                                    +-...|+.|...|.+++||++....+......   ....|...+||.||.
T Consensus       317 ------------------------------~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs  366 (385)
T KOG1034|consen  317 ------------------------------PWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS  366 (385)
T ss_pred             ------------------------------HHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence                                          11455899999999999999887664332222   235789999999999


Q ss_pred             EEEEEECCCcEEEEeCC
Q 012799          374 WVASASFDKSIKLWNGT  390 (456)
Q Consensus       374 ~l~s~~~dg~i~iwd~~  390 (456)
                      +|+..+.|+.|.-||..
T Consensus       367 ~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  367 ILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEEEeCCCcEEEEEee
Confidence            99999999999999853

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.5e-21  Score=157.37  Aligned_cols=242  Identities=16%  Similarity=0.240  Sum_probs=171.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE
Q 012799          153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC  232 (456)
Q Consensus       153 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  232 (456)
                      ..|+.|++.|.+||+|+.||.|.|||+.+.... +.+.+|..+|.+++|++     +|+.|++++.|..|.+||+..+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia-r~lsaH~~pi~sl~WS~-----dgr~LltsS~D~si~lwDl~~gs~   99 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA-RMLSAHVRPITSLCWSR-----DGRKLLTSSRDWSIKLWDLLKGSP   99 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh-hhhhccccceeEEEecC-----CCCEeeeecCCceeEEEeccCCCc
Confidence            789999999999999999999999999988744 48999999999999999     999999999999999999999999


Q ss_pred             EEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCCh
Q 012799          233 VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (456)
Q Consensus       233 ~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (456)
                      ++.+. ..++|+.+.|+|..  ..++.-.+..-.+-++..++  ...         +..++++.+.....          
T Consensus       100 l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~---------Lp~d~d~dln~sas----------  157 (405)
T KOG1273|consen  100 LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSV---------LPKDDDGDLNSSAS----------  157 (405)
T ss_pred             eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eee---------ccCCCccccccccc----------
Confidence            88886 67899999999965  44444444444444444321  111         11111111100000          


Q ss_pred             HHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc-cccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (456)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  389 (456)
                                 ..++...++++++|...|.+.++|..+.+ .+..++-. ...|.++.|+..|++|+.-+.|..||.|++
T Consensus       158 -----------~~~fdr~g~yIitGtsKGkllv~~a~t~e-~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~  225 (405)
T KOG1273|consen  158 -----------HGVFDRRGKYIITGTSKGKLLVYDAETLE-CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI  225 (405)
T ss_pred             -----------cccccCCCCEEEEecCcceEEEEecchhe-eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence                       00122348899999999999999976553 33333322 367899999999999999999999999998


Q ss_pred             CCCe------EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC-CCceEEC
Q 012799          390 TTGK------FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVT  456 (456)
Q Consensus       390 ~~~~------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~-Dg~v~iW  456 (456)
                      +.--      .+.....-.+.|+.+.|+.                      .+||.||.|++.|+. --.++||
T Consensus       226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~----------------------ccfs~dgeYv~a~s~~aHaLYIW  277 (405)
T KOG1273|consen  226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKK----------------------CCFSGDGEYVCAGSARAHALYIW  277 (405)
T ss_pred             hhhcccCccCCcChhHHHHHHHhhhhhhh----------------------eeecCCccEEEeccccceeEEEE
Confidence            7311      1111111123344443321                      178999999988874 4557887

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.88  E-value=2e-20  Score=150.40  Aligned_cols=258  Identities=19%  Similarity=0.234  Sum_probs=188.5

Q ss_pred             ccEEEEEECC--C-CCeEEEEE----CCCcEEEEeCC--CCcceeEE-ecCCCCEEEEEEcCCC-----CEEEEEeCCCe
Q 012799          109 EAVLSVAFSP--D-GRQLASGS----GDTTVRLWDLN--TQTPMFKC-TGHKNWVLCIAWSADG-----KHLVSGSKAGE  173 (456)
Q Consensus       109 ~~V~~~~~s~--~-~~~l~~~~----~d~~v~vwd~~--~~~~~~~~-~~~~~~v~~~~~~~~~-----~~l~s~~~dg~  173 (456)
                      -++.++.|+.  + +.+||.|+    ..+.|.|-.+.  +++.+..- ..|.-+++.+.|.|+.     ++||+++  ..
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~  122 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF  122 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence            3577888883  2 34788887    34567776554  33322211 3689999999999976     3566554  37


Q ss_pred             EEEEeCCCCC--Ccc------ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe---EEEEecCcCcc
Q 012799          174 LQCWDPQTGK--PSG------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLA  242 (456)
Q Consensus       174 i~vwd~~~~~--~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~  242 (456)
                      +++|.+...+  ...      .....+..++++..|...    +-+++.+.+-|.+..|||++++.   ....+-+|...
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~----dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE  198 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV----DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE  198 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccC----CcceeEeecccCeEEEEEEeeccccceeeEEEecCcc
Confidence            9999987422  110      112345678999999875    55789999999999999999863   35567789999


Q ss_pred             EEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEe---ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799          243 VTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIREL---KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (456)
Q Consensus       243 v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (456)
                      |..++|...+  .|++.+.||.+|+||++..+--..+   .....+...++|++.                         
T Consensus       199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq-------------------------  253 (364)
T KOG0290|consen  199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ-------------------------  253 (364)
T ss_pred             eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC-------------------------
Confidence            9999999966  8999999999999999976543333   222456677777765                         


Q ss_pred             HhhhhhccCCCCCEEEEEeC-CCcEEEEecCCCCCCccccccccccEeEEEECCC-CCEEEEEECCCcEEEEeCCCCeE-
Q 012799          318 LERYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKF-  394 (456)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~-  394 (456)
                                +.+++++-.. ...|.+.|++....++..+.+|.+.|+.++|.|. +..|++++.|..+.+||+...-. 
T Consensus       254 ----------DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~  323 (364)
T KOG0290|consen  254 ----------DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE  323 (364)
T ss_pred             ----------CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc
Confidence                      2445665444 4579999999999999999999999999999995 56799999999999999976321 


Q ss_pred             -----EEEEecccccEEEE
Q 012799          395 -----VAVFRGHVGPVYQI  408 (456)
Q Consensus       395 -----~~~~~~~~~~v~~i  408 (456)
                           +..+. -.+.|+.+
T Consensus       324 ~~~dPilay~-a~~EVNqi  341 (364)
T KOG0290|consen  324 NGEDPILAYT-AGGEVNQI  341 (364)
T ss_pred             CCCCchhhhh-ccceeeee
Confidence                 22222 45577777

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.3e-19  Score=142.18  Aligned_cols=248  Identities=21%  Similarity=0.278  Sum_probs=179.5

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCC----------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  178 (456)
                      ..|.+-+++|.+++|++|..+|.|.+..+++          ..++...++|.++|+.++|.  ..+|++|+ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            3566778999999999999999999998754          23445568999999999997  44677765 59999998


Q ss_pred             CCCCCCc-------cccccCc-----ccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEE
Q 012799          179 PQTGKPS-------GNPLSGH-----KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV  246 (456)
Q Consensus       179 ~~~~~~~-------~~~~~~~-----~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  246 (456)
                      ++.....       .....-|     -..|.++...|     ..+-++.++.|+.++-||+++++..+.+++|.+.|.++
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-----~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~v  162 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-----SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSV  162 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEecc-----CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeee
Confidence            8654321       0011112     23577777777     55667777799999999999999999999999999999


Q ss_pred             EeC-CCCeEEEEeCCCcEEEEECCCCeEEEEeecC----------CcceEEEEecCcceeeeccccCCCCccCChHHHHH
Q 012799          247 KWG-GDGVIYTGSQDCTIKVWETTQGKLIRELKGH----------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (456)
Q Consensus       247 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (456)
                      .-. .++.+++|+.||++++||+++++.++.+...          ..+|-+++.+.+                       
T Consensus       163 v~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-----------------------  219 (325)
T KOG0649|consen  163 VGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-----------------------  219 (325)
T ss_pred             eecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-----------------------
Confidence            984 4559999999999999999999998877432          234555555544                       


Q ss_pred             HHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  395 (456)
                                     .++ ++....+.+|.++.......  ..-..++..+.|.  ...+++++..+.|.-|.+ +|.+-
T Consensus       220 ---------------Wlv-CGgGp~lslwhLrsse~t~v--fpipa~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~  278 (325)
T KOG0649|consen  220 ---------------WLV-CGGGPKLSLWHLRSSESTCV--FPIPARVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQ  278 (325)
T ss_pred             ---------------eEE-ecCCCceeEEeccCCCceEE--EecccceeEeeee--cceEEEeccccceeeeee-ccEEE
Confidence                           344 45556899999887653222  1234557777885  446788888888999986 45554


Q ss_pred             EEEecccccEEEE
Q 012799          396 AVFRGHVGPVYQI  408 (456)
Q Consensus       396 ~~~~~~~~~v~~i  408 (456)
                      ..........++.
T Consensus       279 a~ip~~s~~c~s~  291 (325)
T KOG0649|consen  279 ANIPVESTACYSA  291 (325)
T ss_pred             EeccCCccceeee
Confidence            4444433344444

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=9.1e-22  Score=168.92  Aligned_cols=290  Identities=20%  Similarity=0.293  Sum_probs=224.9

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE-ecCCCCEEEEEEcC--CCCEEEEEeCCCeEEE
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSA--DGKHLVSGSKAGELQC  176 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~v  176 (456)
                      ....|.+|.+.|..+.|+..|..|++|+.|..|.+||...+.....+ .+|...|....|-|  +..-+++++.||.+++
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            34678899999999999999999999999999999999998877666 48999999889988  4568999999999999


Q ss_pred             EeCCCCCC-c-cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCc---cEEEEEe
Q 012799          177 WDPQTGKP-S-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTL---AVTCVKW  248 (456)
Q Consensus       177 wd~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~---~v~~~~~  248 (456)
                      =.+..... . ...+..|.+.|..++..|..    -..|.+++.|+.+.-+|++...+...+   ..+..   ....++.
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~s----p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~  289 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDS----PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV  289 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCC----CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence            87654332 2 23567899999999988853    357999999999999999876543332   22333   5678888


Q ss_pred             CCCC--eEEEEeCCCcEEEEECCCCe------EEEEee------cCCcceEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799          249 GGDG--VIYTGSQDCTIKVWETTQGK------LIRELK------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (456)
Q Consensus       249 ~~~~--~l~~~~~dg~i~iwd~~~~~------~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (456)
                      +|.+  .+++++.|..+++||.+.-.      .+..+.      .....|++++++.+                      
T Consensus       290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~----------------------  347 (559)
T KOG1334|consen  290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD----------------------  347 (559)
T ss_pred             CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC----------------------
Confidence            9866  89999999999999987522      122222      22345788888765                      


Q ss_pred             HHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC------------Cccccccccc--cEeEEE-ECCCCCEEEEEE
Q 012799          315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ------------PKTRMTGHQQ--LVNHVY-FSPDGQWVASAS  379 (456)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~--~v~~~~-~sp~~~~l~s~~  379 (456)
                                    +.-++++-.|-.|+++....+..            ....+++|..  .|..+- |-|...|+++|+
T Consensus       348 --------------~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS  413 (559)
T KOG1334|consen  348 --------------GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS  413 (559)
T ss_pred             --------------ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC
Confidence                          33366677788888885322211            1223567765  355664 567889999999


Q ss_pred             CCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       380 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .-|.|.||+-++++.++.+++....|+|+                           .=+|--..||++|-|.-|+||
T Consensus       414 DCGhIFiW~K~t~eii~~MegDr~VVNCL---------------------------EpHP~~PvLAsSGid~DVKIW  463 (559)
T KOG1334|consen  414 DCGHIFIWDKKTGEIIRFMEGDRHVVNCL---------------------------EPHPHLPVLASSGIDHDVKIW  463 (559)
T ss_pred             ccceEEEEecchhHHHHHhhcccceEecc---------------------------CCCCCCchhhccCCccceeee
Confidence            99999999999999999998887889988                           668888899999999999999

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=1.1e-18  Score=164.23  Aligned_cols=286  Identities=40%  Similarity=0.652  Sum_probs=224.3

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEEC-CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEE
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQC  176 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~-d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~v  176 (456)
                      .....+.+|...|.+++|+|+++.+++++. |+.+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.|++
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  225 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL  225 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence            566778899999999999999998888885 99999999998888888999999999999999998 5555599999999


Q ss_pred             EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE-EEEecCcCccEEEEEeCCCC-eE
Q 012799          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWGGDG-VI  254 (456)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~-~l  254 (456)
                      ||...+......+..|.... ...|+|     ++..+++++.|+.+++|++..... ...+..|...+.++.|.|++ .+
T Consensus       226 wd~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  299 (466)
T COG2319         226 WDLSTGKLLRSTLSGHSDSV-VSSFSP-----DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL  299 (466)
T ss_pred             EECCCCcEEeeecCCCCcce-eEeECC-----CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence            98886655443466676664 337777     667888999999999999986664 44446788999999999966 77


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799          255 YTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (456)
Q Consensus       255 ~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (456)
                      ++++.|+.+.+||..+........  .|...+..+.+ ...                                   +..+
T Consensus       300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------------------------------~~~~  343 (466)
T COG2319         300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPD-----------------------------------GSLL  343 (466)
T ss_pred             EEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCC-----------------------------------CCEE
Confidence            778888899999999887766665  66667888877 431                                   1224


Q ss_pred             EEE-eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEE-EECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799          333 VSG-SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       333 ~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      +.+ ..|+.+.+|+..... ....... ...+..+.+++ ...++. +..++.+.+|+............+...+...  
T Consensus       344 ~~~~~~d~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  418 (466)
T COG2319         344 VSGGSDDGTIRLWDLRTGK-PLKTLEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSL--  418 (466)
T ss_pred             EEeecCCCcEEeeecCCCc-eeEEecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEE--
Confidence            444 678899999977665 2222222 22288899998 544444 6889999999999888877666554566666  


Q ss_pred             eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                               .+++++..+++++.++.+++|
T Consensus       419 -------------------------~~~~~~~~~~~~~~~~~~~~~  439 (466)
T COG2319         419 -------------------------DFSPDGKSLASGSSDNTIRLW  439 (466)
T ss_pred             -------------------------EECCCCcEEEEecCCCcEEEE
Confidence                                     789999999999999999987

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=1.3e-20  Score=153.84  Aligned_cols=242  Identities=22%  Similarity=0.346  Sum_probs=183.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-------Ccc-----ccccCcccceEEEEeccc--ccCCCCCEEEEEeC
Q 012799          153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGK-------PSG-----NPLSGHKKWITGISWEPV--HLNAPCRRFVSASK  218 (456)
Q Consensus       153 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~-----~~~~~~~~~v~~~~~~~~--~~~~~~~~l~~~~~  218 (456)
                      .....|+|||..|++-+.|..+++|++...-       ...     .........|...+|-+.  ...++..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            4567899999999999999999999875321       110     011122345777777642  12336678999999


Q ss_pred             CCcEEEEECCCCeEEEEecC--cC---ccEEEEEeCCCC-eEEEEeCCCcEEEEEC-CCCeEEEEe-------ecCCcce
Q 012799          219 DGDARIWDVSLRKCVICLSG--HT---LAVTCVKWGGDG-VIYTGSQDCTIKVWET-TQGKLIREL-------KGHGHWV  284 (456)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~--~~---~~v~~~~~~~~~-~l~~~~~dg~i~iwd~-~~~~~~~~~-------~~~~~~i  284 (456)
                      +.-|++||.-+++....+.+  |.   ....+++|+||| .|+ ++....|++||+ +.|+.....       .+..+.+
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe-ecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            99999999999988777654  22   245689999999 555 556688999999 555432211       1235678


Q ss_pred             EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEe
Q 012799          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN  364 (456)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  364 (456)
                      .+++++|..                                   ...++.|+....+-||. ..+..+...+.+|.+.|+
T Consensus       211 sc~a~sP~~-----------------------------------~~~~a~gsY~q~~giy~-~~~~~pl~llggh~gGvT  254 (406)
T KOG2919|consen  211 SCFAFSPMD-----------------------------------SKTLAVGSYGQRVGIYN-DDGRRPLQLLGGHGGGVT  254 (406)
T ss_pred             eeeeccCCC-----------------------------------CcceeeecccceeeeEe-cCCCCceeeecccCCCee
Confidence            889999873                                   44688999888888887 455667788889999999


Q ss_pred             EEEECCCCCEEEEEEC-CCcEEEEeCCC-CeEEEEEecccc-cEEEEEeeeeeeecCCCCceeeecccccccceeEecCC
Q 012799          365 HVYFSPDGQWVASASF-DKSIKLWNGTT-GKFVAVFRGHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS  441 (456)
Q Consensus       365 ~~~~sp~~~~l~s~~~-dg~i~iwd~~~-~~~~~~~~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  441 (456)
                      .++|.++|+.|++|.. |-.|..||++. +.++..+..|.+ .-..|-|                         ...|+|
T Consensus       255 hL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~F-------------------------Dld~~~  309 (406)
T KOG2919|consen  255 HLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILF-------------------------DLDPKG  309 (406)
T ss_pred             eEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEE-------------------------ecCCCC
Confidence            9999999999999874 66899999987 566778888877 5566655                         678999


Q ss_pred             CeEEEeeCCCceEEC
Q 012799          442 RLLLSGSKDSTLKVT  456 (456)
Q Consensus       442 ~~l~s~s~Dg~v~iW  456 (456)
                      ++|++|+.||.|++|
T Consensus       310 ~~LasG~tdG~V~vw  324 (406)
T KOG2919|consen  310 EILASGDTDGSVRVW  324 (406)
T ss_pred             ceeeccCCCccEEEE
Confidence            999999999999999

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.87  E-value=2.9e-20  Score=164.84  Aligned_cols=149  Identities=26%  Similarity=0.395  Sum_probs=118.9

Q ss_pred             CccEEEEEeCCCC--eEEEEeCCCcEEEEECCCC-------eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCCh
Q 012799          240 TLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG-------KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (456)
Q Consensus       240 ~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (456)
                      ...|+.+.|+|-.  .|++++.||.|++|.+..+       .+-..+..|...|+++.|+|-.                 
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-----------------  689 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA-----------------  689 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh-----------------
Confidence            3458899999944  9999999999999998653       3556788899999999999862                 


Q ss_pred             HHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                                        .+.|++++.|.+|++||+++.. ....+.+|.+.|..++|||+|+.+|+.+.||+|++|+-+
T Consensus       690 ------------------advLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr  750 (1012)
T KOG1445|consen  690 ------------------ADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPR  750 (1012)
T ss_pred             ------------------hhHhhhhhccceeeeeehhhhh-hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCC
Confidence                              4558999999999999987654 455688999999999999999999999999999999988


Q ss_pred             CCeE-EEEEecccc-cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC
Q 012799          391 TGKF-VAVFRGHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS  451 (456)
Q Consensus       391 ~~~~-~~~~~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg  451 (456)
                      +++. ++.-++..+ .--.+                           .|.-||++++..|-|.
T Consensus       751 s~e~pv~Eg~gpvgtRgARi---------------------------~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  751 SREQPVYEGKGPVGTRGARI---------------------------LWACDGRIVIVVGFDK  786 (1012)
T ss_pred             CCCCccccCCCCccCcceeE---------------------------EEEecCcEEEEecccc
Confidence            7643 333332222 11222                           7888999988887765

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.87  E-value=1.4e-19  Score=166.25  Aligned_cols=260  Identities=19%  Similarity=0.324  Sum_probs=190.9

Q ss_pred             CcEEEEeCCCC-cceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCc-----cccccCcccceEEEEec
Q 012799          130 TTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPS-----GNPLSGHKKWITGISWE  202 (456)
Q Consensus       130 ~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~v~~~~~~  202 (456)
                      +.+.||++... .+...+ .-...|+|+.|+| +..+++.|..+|.|.+||++.+...     ......|..+++.+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            47999999876 333444 3678899999999 6778888999999999999877652     22356788999999998


Q ss_pred             ccccCCCCCEEEEEeCCCcEEEEECCCCeEE------EEec------CcCccEEEEEeCCCC--eEEEEeCCCcEEEEEC
Q 012799          203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCV------ICLS------GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWET  268 (456)
Q Consensus       203 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~------~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~  268 (456)
                      ...   .+.-|++++.||.|..|+++.-...      ....      .....+++++|.+..  .+++|+.+|.|.--+.
T Consensus       301 ~~~---~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r  377 (555)
T KOG1587|consen  301 QNE---HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR  377 (555)
T ss_pred             ccC---CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence            843   3356999999999999988643321      0011      123468899998865  8999999999887443


Q ss_pred             CCCe--------EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799          269 TQGK--------LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (456)
Q Consensus       269 ~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  340 (456)
                      ...+        ....+..|.++|.++.++|-+                                   ...+++++ |-+
T Consensus       378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~-----------------------------------~k~fls~g-DW~  421 (555)
T KOG1587|consen  378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY-----------------------------------PKNFLSVG-DWT  421 (555)
T ss_pred             cCCcccccccccccccccccCcceEeeecCCCc-----------------------------------cceeeeec-cce
Confidence            3221        123445688899999998863                                   22344444 999


Q ss_pred             EEEEecCCCCCCccccccccccEeEEEECCCC-CEEEEEECCCcEEEEeCCCC--eEEEEEecccccEEEEEeeeeeeec
Q 012799          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTG--KFVAVFRGHVGPVYQIRFELIYCFR  417 (456)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~  417 (456)
                      +++|.......++..+..+...+++++|||-. ..++++..||.+.+||+...  .++.....+....+.+         
T Consensus       422 vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~---------  492 (555)
T KOG1587|consen  422 VRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRV---------  492 (555)
T ss_pred             eEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccccccee---------
Confidence            99999654666777777888889999999954 46888889999999998653  2333333333333344         


Q ss_pred             CCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                        .|+++|+.|+.|...|++.+|
T Consensus       493 ------------------~~s~~g~~lavGd~~G~~~~~  513 (555)
T KOG1587|consen  493 ------------------RWSPNGKLLAVGDANGTTHIL  513 (555)
T ss_pred             ------------------ecCCCCcEEEEecCCCcEEEE
Confidence                              789999999999999999875

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=1.8e-20  Score=157.47  Aligned_cols=270  Identities=21%  Similarity=0.276  Sum_probs=193.5

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCC--------C--------CcceeEEecCCCCEEEEEEcCCCCE
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--------T--------QTPMFKCTGHKNWVLCIAWSADGKH  164 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~  164 (456)
                      ...|..|...|+++.|+|+|++||+|+.+|.|.+|...        +        -.....+.+|...|..++|+|++.+
T Consensus        58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~  137 (434)
T KOG1009|consen   58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF  137 (434)
T ss_pred             eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence            45788999999999999999999999999999999765        2        1233556789999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-------
Q 012799          165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-------  237 (456)
Q Consensus       165 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------  237 (456)
                      +++++.|..+++||+..|+... .+..|...+..++|.|     -++++++-+.|...+.+.+...+.+....       
T Consensus       138 l~s~s~dns~~l~Dv~~G~l~~-~~~dh~~yvqgvawDp-----l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~  211 (434)
T KOG1009|consen  138 LVSGSVDNSVRLWDVHAGQLLA-ILDDHEHYVQGVAWDP-----LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK  211 (434)
T ss_pred             eeeeeccceEEEEEeccceeEe-eccccccccceeecch-----hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence            9999999999999999999876 7889999999999999     66888888888877777765433322111       


Q ss_pred             ------------Cc----CccEEEEEeCCCC-eEEEEeC----CC-----cEEEEECCC-CeEEEEeecCCcceEEEEec
Q 012799          238 ------------GH----TLAVTCVKWGGDG-VIYTGSQ----DC-----TIKVWETTQ-GKLIRELKGHGHWVNSLALS  290 (456)
Q Consensus       238 ------------~~----~~~v~~~~~~~~~-~l~~~~~----dg-----~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~  290 (456)
                                  .|    ..-...++|+|+| .+++.+.    .+     ..++|+-.. .++...+.....+...+.++
T Consensus       212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~  291 (434)
T KOG1009|consen  212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS  291 (434)
T ss_pred             ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence                        01    1224567889999 5554322    22     234454332 24455566666777777777


Q ss_pred             CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC
Q 012799          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (456)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp  370 (456)
                      |-+.-... .......                  +..+-..+++-.....+++||..........-.-|-..++.++|++
T Consensus       292 pVy~elrp-~~~~~~~------------------~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~  352 (434)
T KOG1009|consen  292 PVYYELRP-LSSEKFL------------------FVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD  352 (434)
T ss_pred             eeEEEecc-ccccccc------------------cccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecC
Confidence            75422111 1111001                  1111223444444568999997766666566667889999999999


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCeEE
Q 012799          371 DGQWVASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       371 ~~~~l~s~~~dg~i~iwd~~~~~~~  395 (456)
                      ||.+|+..+.||...+--++..++-
T Consensus       353 dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  353 DGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             CCcEEEEeccCCceEEEEEcchhcc
Confidence            9999999999998888877765543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.87  E-value=2.4e-20  Score=166.27  Aligned_cols=243  Identities=19%  Similarity=0.310  Sum_probs=186.7

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  177 (456)
                      +...++|+||.+.|+|++|+.||+.+|+|+.|+.|.+|+-.- +-+..+ .|.+.|.|+.|+|-...|++++.. ..-+|
T Consensus        43 G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglW  119 (1081)
T KOG1538|consen   43 GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLW  119 (1081)
T ss_pred             cccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee-ccCCeeeEeecCchHHHhhhcchh-hcccc
Confidence            456789999999999999999999999999999999998542 223333 499999999999999999998865 47788


Q ss_pred             eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE--EecCcCccEEEEEeCCCC---
Q 012799          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDG---  252 (456)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~---  252 (456)
                      .........   ......+.+++|..     ||++++.|-.+|+|.+-+-.....+.  .-.+...+|.+++|+|..   
T Consensus       120 S~~qK~V~K---~kss~R~~~CsWtn-----DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G  191 (1081)
T KOG1538|consen  120 SPEQKSVSK---HKSSSRIICCSWTN-----DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEG  191 (1081)
T ss_pred             ChhhhhHHh---hhhheeEEEeeecC-----CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCC
Confidence            876544322   22345688899988     99999999999999998654333222  223577899999999843   


Q ss_pred             ---eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799          253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (456)
Q Consensus       253 ---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (456)
                         .+++.....++.+|.+. |+.+..-+.-+-.-.++.+.++                                    |
T Consensus       192 ~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~N------------------------------------G  234 (1081)
T KOG1538|consen  192 RNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTN------------------------------------G  234 (1081)
T ss_pred             ccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccC------------------------------------C
Confidence               67788888888888875 4444433333334456666665                                    7


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                      ++++.|+.|+.+.+|. +.+ ...-.....+.+|+.++..|++++++.|+.||+|-.|++.
T Consensus       235 Ey~LiGGsdk~L~~fT-R~G-vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  235 EYILLGGSDKQLSLFT-RDG-VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             cEEEEccCCCceEEEe-ecC-eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            8899999999999997 433 2333444567899999999999999999999999999853

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=3e-20  Score=163.59  Aligned_cols=242  Identities=19%  Similarity=0.298  Sum_probs=188.3

Q ss_pred             eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC---
Q 012799          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG---  220 (456)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---  220 (456)
                      ..+.+|.+.|.++...|.|.+|++|+.||+|+||.+.+|.++...  ...+.|.+++|+|..   +-..||++-.+.   
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~--~~d~~I~~vaw~P~~---~~~vLAvA~~~~~~i  468 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV--QFDSEIRSVAWNPLS---DLCVLAVAVGECVLI  468 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE--eecceeEEEEecCCC---CceeEEEEecCceEE
Confidence            456799999999999999999999999999999999999988633  345689999999953   333444433322   


Q ss_pred             -----------------------------cEEEEECCCC----eEEEEecCcCccEEEEEeCCCC-eEEEEeCC---CcE
Q 012799          221 -----------------------------DARIWDVSLR----KCVICLSGHTLAVTCVKWGGDG-VIYTGSQD---CTI  263 (456)
Q Consensus       221 -----------------------------~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---g~i  263 (456)
                                                   .+..|.-...    .-+...-.|...|..+.|+..| +|++...+   ..|
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence                                         2233322110    0122333578889999999999 88876654   468


Q ss_pred             EEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEE
Q 012799          264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (456)
Q Consensus       264 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  343 (456)
                      .|+++...+...-|....+.+.++.|+|..                                    .++++++ ...|++
T Consensus       549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~------------------------------------p~lfVaT-q~~vRi  591 (733)
T KOG0650|consen  549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSK------------------------------------PYLFVAT-QRSVRI  591 (733)
T ss_pred             EEEecccccccCchhhcCCceeEEEecCCC------------------------------------ceEEEEe-ccceEE
Confidence            999998877777777777889999999973                                    3355554 458999


Q ss_pred             EecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC-eEEEEEecccccEEEEEeeeeeeecCCCCc
Q 012799          344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNF  422 (456)
Q Consensus       344 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~  422 (456)
                      ||+.. +..+.++......|..++.+|.|.-|+.|+.|+.+..+|+.-+ +..++++.|...++++              
T Consensus       592 YdL~k-qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~V--------------  656 (733)
T KOG0650|consen  592 YDLSK-QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSV--------------  656 (733)
T ss_pred             EehhH-HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhh--------------
Confidence            99876 4455556666788999999999999999999999999998764 5677889999999999              


Q ss_pred             eeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       423 ~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                                   +|++.-.++++|+.||++.|
T Consensus       657 -------------a~H~ryPLfas~sdDgtv~V  676 (733)
T KOG0650|consen  657 -------------AFHKRYPLFASGSDDGTVIV  676 (733)
T ss_pred             -------------hhccccceeeeecCCCcEEE
Confidence                         88999999999999999876

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.86  E-value=1.8e-19  Score=145.05  Aligned_cols=239  Identities=20%  Similarity=0.340  Sum_probs=182.7

Q ss_pred             cCCcccEEEEEECCCC-----CeEEEEECCCcEEEEeCCCCccee----E-----EecCCCCEEEEEEcC-CCCEEEEEe
Q 012799          105 AGHTEAVLSVAFSPDG-----RQLASGSGDTTVRLWDLNTQTPMF----K-----CTGHKNWVLCIAWSA-DGKHLVSGS  169 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~-----~~l~~~~~d~~v~vwd~~~~~~~~----~-----~~~~~~~v~~~~~~~-~~~~l~s~~  169 (456)
                      ..|.-+++.+.|.|+.     ++||+++ | .+|+|.+...+...    .     -..+..++++..|+. +.++|.+++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            4799999999999986     3566654 3 69999987422111    1     124678899999997 778999999


Q ss_pred             CCCeEEEEeCCCCCC--ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCccEE
Q 012799          170 KAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVT  244 (456)
Q Consensus       170 ~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~  244 (456)
                      -|-+..|||++++..  +.+.+..|.++|..++|...    .-+.|++.|.||.+++||++..+.-..+   .....+..
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~----s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl  246 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG----SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL  246 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccC----ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence            999999999999743  55678899999999999872    3468999999999999999876654433   22256788


Q ss_pred             EEEeCCCC--eEEEEeCC-CcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799          245 CVKWGGDG--VIYTGSQD-CTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (456)
Q Consensus       245 ~~~~~~~~--~l~~~~~d-g~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (456)
                      .++|++..  ++++-..| ..|.+.|++.. .++..+++|...|+.++|.|.                            
T Consensus       247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh----------------------------  298 (364)
T KOG0290|consen  247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPH----------------------------  298 (364)
T ss_pred             eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCC----------------------------
Confidence            99999876  66665444 56999999874 678899999999999999997                            


Q ss_pred             hhhccCCCCCEEEEEeCCCcEEEEecCCCCC-----CccccccccccEeEEEECC-CCCEEEEEECCCcEEE
Q 012799          321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-----PKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKL  386 (456)
Q Consensus       321 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~i  386 (456)
                             ....++++++|....+||+.....     ++.... -.+.|+.+.|++ .+.+++.+. ++.+.+
T Consensus       299 -------S~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  299 -------SSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             -------CCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence                   366799999999999999865432     222222 456799999997 567777765 333443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2e-19  Score=168.37  Aligned_cols=292  Identities=21%  Similarity=0.313  Sum_probs=206.3

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecC---CCCEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 012799          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH---KNWVLCIAWSA--DGKHLVSGSKAGELQCW  177 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~s~~~dg~i~vw  177 (456)
                      ...+...+-..+.|+|-...++++...-.|+|||.+.++.+..+..+   ...|+.+.+-.  |..++++|+.||.|+||
T Consensus      1059 ~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1059 FMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred             HHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence            34455556778899998888999887779999999998887776543   46788888865  56689999999999999


Q ss_pred             eCCCCC-Cccc----------cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CcCccEEE
Q 012799          178 DPQTGK-PSGN----------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTC  245 (456)
Q Consensus       178 d~~~~~-~~~~----------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~  245 (456)
                      +--... ...+          ...+..+.-.-+.|..     ...+|+++|.-..|+|||.....++..+. +....+++
T Consensus      1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-----~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-----QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTA 1213 (1387)
T ss_pred             cccccccCCceeEEeeccccccCccCCCCCeeeehhh-----hCCeEEecCCeeEEEEEecccceeEeecccCCCcccee
Confidence            743221 1000          1111122223455655     44577777778999999999888877764 34456777


Q ss_pred             EEeCC-CC-eEEEEeCCCcEEEEECCCCe---EEEEeecCCcc--eEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799          246 VKWGG-DG-VIYTGSQDCTIKVWETTQGK---LIRELKGHGHW--VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (456)
Q Consensus       246 ~~~~~-~~-~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (456)
                      +.-+- .| .+++|..||.|++||.+...   .+...+.|...  |..+.+.+.+                         
T Consensus      1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G------------------------- 1268 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG------------------------- 1268 (1387)
T ss_pred             ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC-------------------------
Confidence            76554 33 89999999999999998753   45566667766  8888887752                         


Q ss_pred             hhhhhccCCCCCEEEEEeCCCcEEEEecCCC-CCCcccccccc--c-cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-KQPKTRMTGHQ--Q-LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF  394 (456)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~--~-~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~  394 (456)
                                -..+++|+.+|.|++||++.. .........|.  + ..+++..+++...+|+|+. +.|+||++ .|+.
T Consensus      1269 ----------~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~ 1336 (1387)
T KOG1517|consen 1269 ----------LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQ 1336 (1387)
T ss_pred             ----------CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec-Chhh
Confidence                      124999999999999999884 22222223332  3 4899999999999999998 99999997 4666


Q ss_pred             EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       395 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +..++.+.+...                    .....+.+++|+|-.-+||+|+.|.+|.|.
T Consensus      1337 l~~~k~n~~F~~--------------------q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMG--------------------QRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred             hcccccCccccc--------------------CcCCCcceeeecchhHhhhhccCCceEEEe
Confidence            665553322110                    011112444999999999999999999873

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=4e-20  Score=152.05  Aligned_cols=265  Identities=15%  Similarity=0.235  Sum_probs=188.3

Q ss_pred             ccccccccCCcccEEEEEECC--CCCeEEEEECCCcEEEEeCCCCcceeEE--ecCC-CCEEEEEEcCCCCEEEEEeC--
Q 012799           98 NRCSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQTPMFKC--TGHK-NWVLCIAWSADGKHLVSGSK--  170 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~s~~~--  170 (456)
                      ++....+++|...++.+.|..  ....+.+|+.||+|++||++.......+  ..+. .+..|++.+-.++.+++|..  
T Consensus        60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~  139 (376)
T KOG1188|consen   60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELT  139 (376)
T ss_pred             hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccc
Confidence            457888999999999999987  4567889999999999999886655443  3454 56778888778888888754  


Q ss_pred             --CCeEEEEeCCCCCC-ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe---EEEEecCcCccEE
Q 012799          171 --AGELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLAVT  244 (456)
Q Consensus       171 --dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~  244 (456)
                        +-.|.+||++..+. +......|...|++++|+|.    +.+.|++|+.||-|.+||++...   .+...-.+...|.
T Consensus       140 ~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~----~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~  215 (376)
T KOG1188|consen  140 RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS----DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIH  215 (376)
T ss_pred             cCceEEEEEEeccccchhhhhhhhccCcceeEEecCC----CCCeEEeecccceEEeeecCCCcchhhHHHhhcccceee
Confidence              56799999998877 66677889999999999995    56799999999999999997542   2223334778899


Q ss_pred             EEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhh
Q 012799          245 CVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (456)
Q Consensus       245 ~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (456)
                      ++.|..++  .+.+-+..++..+|+++.+.....+....-  ....                      ..........+.
T Consensus       216 ~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~--~~~d----------------------~r~~~~~dY~I~  271 (376)
T KOG1188|consen  216 LIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV--SADD----------------------LRKEDNCDYVIN  271 (376)
T ss_pred             eeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc--hhhh----------------------HHhhhhhhheee
Confidence            99999988  899999999999999998775443332100  0000                      000000001111


Q ss_pred             hccCCCCCEEEEEeC-CCcEEEEecCC--C---CCCccccc-cccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          323 KIKGNAPERLVSGSD-DFTMFLWEPAV--S---KQPKTRMT-GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       323 ~~~~~~~~~l~~~~~-dg~i~iwd~~~--~---~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                      .....+....+.++. -+...++-+..  .   ......+. +|...|+++.|...+.++.||++||.+.+|...
T Consensus       272 ~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  272 EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence            112223344444443 56655554331  1   12333344 478889999999889999999999999999853

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.85  E-value=3e-19  Score=169.70  Aligned_cols=263  Identities=15%  Similarity=0.193  Sum_probs=184.5

Q ss_pred             eecccccccccCCcccEEEEEECCCC-CeEEEEECCCcEEEEeCCCC-------cceeEEecCCCCEEEEEEcCCCCEEE
Q 012799           95 RPVNRCSATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADGKHLV  166 (456)
Q Consensus        95 ~~~~~~~~~l~~h~~~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~  166 (456)
                      .|.+..++.|..|...|..++.++.. .++++||.||+|++||...-       +...++..-...+.++.+.+.++.+|
T Consensus      1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred             CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence            45667889999999999999998765 99999999999999998642       12234444578899999999999999


Q ss_pred             EEeCCCeEEEEeCCCCCCcc------ccccC-cccceEEE-EecccccCCCCC-EEEEEeCCCcEEEEECCCCeEEEEec
Q 012799          167 SGSKAGELQCWDPQTGKPSG------NPLSG-HKKWITGI-SWEPVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICLS  237 (456)
Q Consensus       167 s~~~dg~i~vwd~~~~~~~~------~~~~~-~~~~v~~~-~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  237 (456)
                      .++.||.|++.+++..+...      ..... ..+.+.++ +|...    .+. .++.+...+.|..||+++.....+++
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~----~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAI----VQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccccc----ccceeEEEEEeccceEEecchhhhhHHhhh
Confidence            99999999999987632111      01111 12233333 23221    333 78888999999999998876655553


Q ss_pred             --CcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeec-CCcceEEEEecCcceeeeccccCCCCccCChHHH
Q 012799          238 --GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (456)
Q Consensus       238 --~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (456)
                        ...+.|++++.+|.+ .++.|+..|.+.+||+|-+.++..... +..++..+..+|-..-                  
T Consensus      1191 ~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~------------------ 1252 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQ------------------ 1252 (1431)
T ss_pred             cCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCC------------------
Confidence              345789999999988 999999999999999999988887753 4567888887775321                  


Q ss_pred             HHHHHhhhhhccCCCCCE-EEEEe-CCCcEEEEecCCCCCCccccc------------------cccccEeEEEECCCCC
Q 012799          314 KKAALERYNKIKGNAPER-LVSGS-DDFTMFLWEPAVSKQPKTRMT------------------GHQQLVNHVYFSPDGQ  373 (456)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~-l~~~~-~dg~i~iwd~~~~~~~~~~~~------------------~~~~~v~~~~~sp~~~  373 (456)
                                     ... +.+++ ..+.+.+|++.++........                  .+.-.....++.--+.
T Consensus      1253 ---------------~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~ 1317 (1431)
T KOG1240|consen 1253 ---------------ESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG 1317 (1431)
T ss_pred             ---------------CceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc
Confidence                           112 33333 567788888766532211111                  1111222334444456


Q ss_pred             EEEEEECCCcEEEEeCCCCeE
Q 012799          374 WVASASFDKSIKLWNGTTGKF  394 (456)
Q Consensus       374 ~l~s~~~dg~i~iwd~~~~~~  394 (456)
                      ++.+|+.|..|+.||....+.
T Consensus      1318 ~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1318 FLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             eeeecCCccceeeccCCCccc
Confidence            899999999999999765443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=1.2e-19  Score=152.07  Aligned_cols=226  Identities=20%  Similarity=0.322  Sum_probs=168.3

Q ss_pred             ccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCC-------cceeEEecCCCCEEEEEEcC-CCCEEEEEeCCC
Q 012799          102 ATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAG  172 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg  172 (456)
                      -.+.||+++|..++|+| +...+|+||.|.+|.||++..+       +++..+.+|...|--++|+| -.+.|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            45679999999999999 5678999999999999998654       45677889999999999999 467899999999


Q ss_pred             eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc-cEEEEEeCCC
Q 012799          173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-AVTCVKWGGD  251 (456)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~  251 (456)
                      +|.+||+.+|+.... + .|...|++++|+.     +|.+|++.+.|..|+|||.++++.+..-.+|.+ .-..+.|..+
T Consensus       155 ~v~iWnv~tgeali~-l-~hpd~i~S~sfn~-----dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~  227 (472)
T KOG0303|consen  155 TVSIWNVGTGEALIT-L-DHPDMVYSMSFNR-----DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS  227 (472)
T ss_pred             eEEEEeccCCceeee-c-CCCCeEEEEEecc-----CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc
Confidence            999999999987753 3 3999999999998     999999999999999999999999988877754 3455667777


Q ss_pred             CeEEEEe----CCCcEEEEECCCCe---EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799          252 GVIYTGS----QDCTIKVWETTQGK---LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (456)
Q Consensus       252 ~~l~~~~----~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (456)
                      +.+++.+    .+..+-+||..+-+   ...++.. .+.|.---+.++..                              
T Consensus       228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~------------------------------  276 (472)
T KOG0303|consen  228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTS------------------------------  276 (472)
T ss_pred             CceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCC------------------------------
Confidence            7555544    35679999876532   2233332 22333333444422                              


Q ss_pred             cCCCCCEEEEEeCCCcEEEEecCCCCCCccccc--cccccEeEEEECC
Q 012799          325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--GHQQLVNHVYFSP  370 (456)
Q Consensus       325 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~sp  370 (456)
                           -..++|-.|+.|+.|.+......+..+.  ....+-..+.|-|
T Consensus       277 -----ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mP  319 (472)
T KOG0303|consen  277 -----IVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMP  319 (472)
T ss_pred             -----EEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccc
Confidence                 2366788899999999766543333221  1223344455554

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.84  E-value=6.9e-19  Score=161.68  Aligned_cols=246  Identities=18%  Similarity=0.261  Sum_probs=186.2

Q ss_pred             CcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCcc--eeE----EecCCCCEEEEEEcCCC--CEEEEEeCCCeEEEE
Q 012799          107 HTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTP--MFK----CTGHKNWVLCIAWSADG--KHLVSGSKAGELQCW  177 (456)
Q Consensus       107 h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~--~~~----~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~vw  177 (456)
                      -...|+|+.|+| +..++|.|+.+|.|.+||+..+..  ...    ...|..+++.+.|..+.  .-+++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            356899999999 567888888999999999987654  222    23689999999998744  459999999999999


Q ss_pred             eCCCCCCccc-----cc------cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC---CCCe-----EEEEecC
Q 012799          178 DPQTGKPSGN-----PL------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV---SLRK-----CVICLSG  238 (456)
Q Consensus       178 d~~~~~~~~~-----~~------~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~---~~~~-----~~~~~~~  238 (456)
                      +++.-.....     ..      ......+++++|.+.    +-..|++|+.+|.|.-=+-   +...     ....+..
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~----~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~  396 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT----DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT  396 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccC----CCceEEEEcCCcEEEEEeccCCcccccccccccccccc
Confidence            8764332110     00      112345788999885    4467999999999887332   2211     2334556


Q ss_pred             cCccEEEEEeCCCC-eEEEEeCCCcEEEEECC-CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799          239 HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (456)
Q Consensus       239 ~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (456)
                      |.++|.++.++|=+ .++..+.|-++++|... ...++..+..+...+++++|+|..                       
T Consensus       397 h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr-----------------------  453 (555)
T KOG1587|consen  397 HIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR-----------------------  453 (555)
T ss_pred             cCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcC-----------------------
Confidence            88999999999977 44444449999999988 667777787788889999999973                       


Q ss_pred             HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-CCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (456)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  391 (456)
                                  ...++++..||.+.+||+.... .+.....-+....+.+.|+++|+.|+.|...|.+.+|++..
T Consensus       454 ------------pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  454 ------------PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ------------ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence                        4458999999999999987543 34444444466778889999999999999999999999864

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=4.5e-19  Score=154.35  Aligned_cols=263  Identities=19%  Similarity=0.313  Sum_probs=186.9

Q ss_pred             CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCE-EEEEEcC-------CCCEEEEEeCCCeEEEE
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV-LCIAWSA-------DGKHLVSGSKAGELQCW  177 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~-------~~~~l~s~~~dg~i~vw  177 (456)
                      -|...|.|+.|+.+...+.+++.+-.+.-||+.+.. ...+.-....+ +.+..-+       ....++.++.||.+.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            477788899999888776666544444444544322 11111111111 1111111       23578889999999998


Q ss_pred             eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEE
Q 012799          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG  257 (456)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~  257 (456)
                      +- .++. .+....|.+.+.+-.|+|     +|.-|+++++||.|++|.- +|-...++.....+|.|++|.|+..=+.-
T Consensus        91 ~k-~~rV-E~sv~AH~~A~~~gRW~~-----dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~  162 (737)
T KOG1524|consen   91 NK-SARV-ERSISAHAAAISSGRWSP-----DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVF  162 (737)
T ss_pred             cc-cchh-hhhhhhhhhhhhhcccCC-----CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEE
Confidence            74 3333 336889999999999999     9999999999999999983 44444444456788999999998822223


Q ss_pred             eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (456)
                      +..+.+.|=.+.....+-..+.|.+-|.++.|++.                                    .+.+++|++
T Consensus       163 c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~------------------------------------s~lI~sgGE  206 (737)
T KOG1524|consen  163 CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQ------------------------------------SNIIASGGE  206 (737)
T ss_pred             ecCCeEEEeecccccceeEEeccCcEEEEeecCcc------------------------------------ccceeecCC
Confidence            34456777777776677778889999999999998                                    566999999


Q ss_pred             CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeec
Q 012799          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (456)
Q Consensus       338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  417 (456)
                      |-..++||. . ......-..|+.+|++++|.|+ +.++.++. +++++           -+...+.|..+         
T Consensus       207 D~kfKvWD~-~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~-----------~~p~~GSifnl---------  262 (737)
T KOG1524|consen  207 DFRFKIWDA-Q-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF-----------SSPRVGSIFNL---------  262 (737)
T ss_pred             ceeEEeecc-c-CcccccCChhccceeeeeeccc-cceeeeee-eeeee-----------cCCCccceEEE---------
Confidence            999999993 2 3455566789999999999999 55666653 33441           12345677778         


Q ss_pred             CCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                                        +||+||..++.|...|.+.+
T Consensus       263 ------------------sWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  263 ------------------SWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ------------------EEcCCCceeeccccCceEEE
Confidence                              99999999999999988753

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=5.2e-18  Score=156.39  Aligned_cols=281  Identities=21%  Similarity=0.247  Sum_probs=200.6

Q ss_pred             cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC----CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  180 (456)
                      ..|...++|.++||+++++|+|..||.|.+|.--.    ......+.-|...|.+++|+++|.+|++||..|.+.+|.+.
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            45778899999999999999999999999996432    12345667799999999999999999999999999999999


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-----------cCccEEEEEeC
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-----------HTLAVTCVKWG  249 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~  249 (456)
                      +++.  +.+..-.++|..+.++|     +++..+....|..|.+....+.....++.+           ..+-.+.++++
T Consensus       282 T~~k--qfLPRLgs~I~~i~vS~-----ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id  354 (792)
T KOG1963|consen  282 TGKK--QFLPRLGSPILHIVVSP-----DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID  354 (792)
T ss_pred             CCCc--ccccccCCeeEEEEEcC-----CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence            9984  36788889999999999     999999999999999998765544333322           23446778888


Q ss_pred             C-CCeEEEEeCCCcEEEEECCCCeEEEEeec-----CC------cceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799          250 G-DGVIYTGSQDCTIKVWETTQGKLIRELKG-----HG------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (456)
Q Consensus       250 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (456)
                      | .+.++-.+..|.|.+||+-+.+.+..+..     +.      ..++.++.+..                         
T Consensus       355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~-------------------------  409 (792)
T KOG1963|consen  355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF-------------------------  409 (792)
T ss_pred             CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc-------------------------
Confidence            8 34788889999999999998877766532     11      11222222222                         


Q ss_pred             HhhhhhccCCCCCEEEEEe--------CC--CcEEEEecCCCCCC----ccccccccccEeEEEECC-C-CCEEEEEECC
Q 012799          318 LERYNKIKGNAPERLVSGS--------DD--FTMFLWEPAVSKQP----KTRMTGHQQLVNHVYFSP-D-GQWVASASFD  381 (456)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~--------~d--g~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~sp-~-~~~l~s~~~d  381 (456)
                                 +.+++|.-        .|  -.+++|-.....+-    ......|...+...++.+ . ....++++.|
T Consensus       410 -----------gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d  478 (792)
T KOG1963|consen  410 -----------GSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD  478 (792)
T ss_pred             -----------ceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccC
Confidence                       23333331        22  35788874433321    122346777666665554 2 3379999999


Q ss_pred             CcEEEEeCCCCeEE----------EEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC
Q 012799          382 KSIKLWNGTTGKFV----------AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS  451 (456)
Q Consensus       382 g~i~iwd~~~~~~~----------~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg  451 (456)
                      |.++||-+.+.+.+          ..-.-|..+++.+                           +|+.|| .+++.|.|+
T Consensus       479 g~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~---------------------------~fs~dG-slla~s~~~  530 (792)
T KOG1963|consen  479 GDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITAL---------------------------CFSQDG-SLLAVSFDD  530 (792)
T ss_pred             CeEEEEEEecccccCcCccceEEeeeeccccCcccch---------------------------hhcCCC-cEEEEecCC
Confidence            99999987432221          1111245556665                           899999 556677888


Q ss_pred             ceEEC
Q 012799          452 TLKVT  456 (456)
Q Consensus       452 ~v~iW  456 (456)
                      +|.||
T Consensus       531 ~Itiw  535 (792)
T KOG1963|consen  531 TITIW  535 (792)
T ss_pred             EEEEe
Confidence            99998

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=4.9e-20  Score=161.27  Aligned_cols=245  Identities=20%  Similarity=0.261  Sum_probs=177.7

Q ss_pred             eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC-------ccccccCcccceEEEEecccccCCCCCEEEEE
Q 012799          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSA  216 (456)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~  216 (456)
                      .++..|...|+.++|.|-...|++++.||.+.+|+++....       ....+.+|.++|.++++.+     ++..+++|
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-----n~~~~ysg  362 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-----NGEHCYSG  362 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-----CceEEEee
Confidence            35667899999999999999999999999999999943211       1124789999999999988     89999999


Q ss_pred             eCCCcEEEEECCCC----------eEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCC--cc
Q 012799          217 SKDGDARIWDVSLR----------KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG--HW  283 (456)
Q Consensus       217 ~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~  283 (456)
                      +-||+|+.|++...          .....+.||...++.+++++.. .|++++.||+++.|+.....+ .++....  ..
T Consensus       363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence            99999999966421          2234567999999999999877 999999999999999876655 3332211  11


Q ss_pred             eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc------ccc
Q 012799          284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT------RMT  357 (456)
Q Consensus       284 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------~~~  357 (456)
                      -.++.+-...                                   ....++...-+.-.+++.........      ...
T Consensus       442 Plsvd~~ss~-----------------------------------~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~  486 (577)
T KOG0642|consen  442 PLSVDRTSSR-----------------------------------PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP  486 (577)
T ss_pred             cceEeeccch-----------------------------------hHhhhhhcccccccchhhhhhhheeeccccCCCcc
Confidence            2222221110                                   00011111111111111111111000      001


Q ss_pred             cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeE
Q 012799          358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (456)
Q Consensus       358 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (456)
                      .....+..+.++|.+.+.+++..|+.|+++|..+++++.....|...++++                           ++
T Consensus       487 ~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsl---------------------------ai  539 (577)
T KOG0642|consen  487 RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSL---------------------------AI  539 (577)
T ss_pred             cccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecce---------------------------ee
Confidence            112347778899999999999999999999999999999999999999999                           88


Q ss_pred             ecCCCeEEEeeCCCceEEC
Q 012799          438 SADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       438 s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .|+|-+|++++.||.+++|
T Consensus       540 ~~ng~~l~s~s~d~sv~l~  558 (577)
T KOG0642|consen  540 DPNGPYLMSGSHDGSVRLW  558 (577)
T ss_pred             cCCCceEEeecCCceeehh
Confidence            9999999999999999998

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.83  E-value=1.5e-18  Score=145.56  Aligned_cols=208  Identities=22%  Similarity=0.371  Sum_probs=162.5

Q ss_pred             EEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCc------cccccCcccceEEEEecccccCCCCCEEEEEe
Q 012799          145 KCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPS------GNPLSGHKKWITGISWEPVHLNAPCRRFVSAS  217 (456)
Q Consensus       145 ~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~  217 (456)
                      ...+|.++|..++|+| +...||+|+.|.+|.||++-.+...      ...+.+|...|--+.|+|..    .+.|++++
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA----~NVLlsag  151 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA----PNVLLSAG  151 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc----hhhHhhcc
Confidence            3458999999999999 6778999999999999998765432      23578999999999999964    45899999


Q ss_pred             CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcc-eEEEEecCccee
Q 012799          218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW-VNSLALSTEYAL  295 (456)
Q Consensus       218 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~  295 (456)
                      .|.+|.+||+.+++.+.++. |...|.++.|+.+| .+++.+.|..|++||.++++.+..-..|.+. -....|-.+   
T Consensus       152 ~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~---  227 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS---  227 (472)
T ss_pred             CCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc---
Confidence            99999999999999998887 99999999999999 9999999999999999999999887666542 222223322   


Q ss_pred             eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE---eCCCcEEEEecCCCCCCcccc-ccccccEeEEEECCC
Q 012799          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG---SDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPD  371 (456)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~sp~  371 (456)
                                                       +..+-+|   ..+..+.+||..+-..+.... ....+.|.---|.+|
T Consensus       228 ---------------------------------g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~d  274 (472)
T KOG0303|consen  228 ---------------------------------GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPD  274 (472)
T ss_pred             ---------------------------------CceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCC
Confidence                                             3323333   346789999977655553322 123345666678898


Q ss_pred             CCEEEE-EECCCcEEEEeCCCCe
Q 012799          372 GQWVAS-ASFDKSIKLWNGTTGK  393 (456)
Q Consensus       372 ~~~l~s-~~~dg~i~iwd~~~~~  393 (456)
                      .++++. |-.|+.|+-|.+....
T Consensus       275 t~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  275 TSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             CCEEEEEecCCcceEEEEecCCC
Confidence            888665 5579999999987654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.83  E-value=1.4e-17  Score=149.96  Aligned_cols=264  Identities=12%  Similarity=0.146  Sum_probs=168.6

Q ss_pred             EEEEECCCcEEEEeCCC-Cc--ceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-CCCccccccCcccceE
Q 012799          123 LASGSGDTTVRLWDLNT-QT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQT-GKPSGNPLSGHKKWIT  197 (456)
Q Consensus       123 l~~~~~d~~v~vwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~v~  197 (456)
                      +++...++.|.+|++.+ ++  .+..+. +.+....++++|++++|++++ .++.|.+|+++. +...............
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            33446789999999964 32  334443 446678899999999987765 478899999873 3321111111223456


Q ss_pred             EEEecccccCCCCCEEEEEeC-CCcEEEEECCCC----eEEEEecCcCccEEEEEeCCCC-eEE-EEeCCCcEEEEECCC
Q 012799          198 GISWEPVHLNAPCRRFVSASK-DGDARIWDVSLR----KCVICLSGHTLAVTCVKWGGDG-VIY-TGSQDCTIKVWETTQ  270 (456)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~i~iwd~~~  270 (456)
                      .+.++|     +++.+++++. ++.|.+|++.+.    +.+..+. +.....+++++|++ .++ +...++.|.+||+.+
T Consensus        84 ~i~~~~-----~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028         84 HISTDH-----QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             EEEECC-----CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence            788888     8888887764 889999999642    2222222 23346778899998 554 455679999999976


Q ss_pred             CeEEEE-----ee-cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-CCcEEE
Q 012799          271 GKLIRE-----LK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DFTMFL  343 (456)
Q Consensus       271 ~~~~~~-----~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i  343 (456)
                      ...+..     .. ........+.++|+                                    +++++++.. ++.|.+
T Consensus       158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pd------------------------------------g~~lyv~~~~~~~v~v  201 (330)
T PRK11028        158 DGHLVAQEPAEVTTVEGAGPRHMVFHPN------------------------------------QQYAYCVNELNSSVDV  201 (330)
T ss_pred             CCcccccCCCceecCCCCCCceEEECCC------------------------------------CCEEEEEecCCCEEEE
Confidence            332211     11 12334566788877                                    555766665 899999


Q ss_pred             EecCCCC-C--Ccccccc------ccccEeEEEECCCCCEEEEEE-CCCcEEEEeCCCCeEEEEEecccc---cEEEEEe
Q 012799          344 WEPAVSK-Q--PKTRMTG------HQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGHVG---PVYQIRF  410 (456)
Q Consensus       344 wd~~~~~-~--~~~~~~~------~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~---~v~~i~~  410 (456)
                      ||+.... .  ....+..      +......+.++|+|++|+++. .++.|.+|++........+.++..   ....+  
T Consensus       202 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~--  279 (330)
T PRK11028        202 WQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGF--  279 (330)
T ss_pred             EEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCce--
Confidence            9986421 1  1111111      122344689999999988875 478999999865322112222211   11223  


Q ss_pred             eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC-CCceEEC
Q 012799          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVT  456 (456)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~-Dg~v~iW  456 (456)
                                               .++|||++|+++.. +++|.+|
T Consensus       280 -------------------------~~~~dg~~l~va~~~~~~v~v~  301 (330)
T PRK11028        280 -------------------------NIDHSGKYLIAAGQKSHHISVY  301 (330)
T ss_pred             -------------------------EECCCCCEEEEEEccCCcEEEE
Confidence                                     88999999998775 8899886

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.7e-19  Score=157.38  Aligned_cols=164  Identities=23%  Similarity=0.406  Sum_probs=133.6

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE-ecCCCCEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSA--DGKHLVSGSKAGELQCW  177 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vw  177 (456)
                      .++|.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-|  +.+.+++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            4678999999999999999999999999999999999887777766 48999999999999  56788999999999999


Q ss_pred             eCCCCC---------CccccccCcccceEEEEecccccCCCC-CEEEEEeCCCcEEEEECCCCeEE----------EEec
Q 012799          178 DPQTGK---------PSGNPLSGHKKWITGISWEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCV----------ICLS  237 (456)
Q Consensus       178 d~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~----------~~~~  237 (456)
                      |+...+         ........|...|..++-.|     ++ ..|.++++||+|+-+|++.....          ..+.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p-----~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~  197 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAP-----NGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN  197 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCC-----CCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence            998522         22224566888888888777     44 78999999999999999863211          1111


Q ss_pred             CcCccEEEEEeCCCC--eEEEEeCCCcEEEEECC
Q 012799          238 GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETT  269 (456)
Q Consensus       238 ~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~  269 (456)
                      ..--...|+..+|..  +|++|+.|-..++||.+
T Consensus       198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            222456789999977  89999999999999965

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=6.7e-18  Score=143.12  Aligned_cols=194  Identities=19%  Similarity=0.293  Sum_probs=143.4

Q ss_pred             EEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEE
Q 012799          197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIR  275 (456)
Q Consensus       197 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~  275 (456)
                      ..++|+.     +|..+++++.||.+|+|+..+...+.....|...|.++.|+||| .|++.+.| ..++|+.+++..+.
T Consensus       148 k~vaf~~-----~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNG-----DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             eEEEEcC-----CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence            5677776     89999999999999999998888888888999999999999999 88888888 89999999996665


Q ss_pred             Eeec--CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE-eCCCcEEEEecCCCCC-
Q 012799          276 ELKG--HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG-SDDFTMFLWEPAVSKQ-  351 (456)
Q Consensus       276 ~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~-  351 (456)
                      ....  .......+.|+.+.           ..                     +.-++++. ..-+.|+.||+..... 
T Consensus       222 ~~t~~~k~~~~~~cRF~~d~-----------~~---------------------~~l~laa~~~~~~~v~~~~~~~w~~~  269 (398)
T KOG0771|consen  222 RKTPFSKDEMFSSCRFSVDN-----------AQ---------------------ETLRLAASQFPGGGVRLCDISLWSGS  269 (398)
T ss_pred             hcCCcccchhhhhceecccC-----------CC---------------------ceEEEEEecCCCCceeEEEeeeeccc
Confidence            5432  11122333333331           00                     01123332 2334555555433222 


Q ss_pred             ---CccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE-ecccccEEEEEeeeeeeecCCCCceeeec
Q 012799          352 ---PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQIRFELIYCFRYPSNFYCVVD  427 (456)
Q Consensus       352 ---~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~~~~~  427 (456)
                         ...+.......|+++++|++|+++|.|+.||.|-|++..+.+.++.. +.|...|+.+                   
T Consensus       270 ~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l-------------------  330 (398)
T KOG0771|consen  270 NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL-------------------  330 (398)
T ss_pred             cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeE-------------------
Confidence               22223333457999999999999999999999999999998887654 5899999999                   


Q ss_pred             ccccccceeEecCCCeEEEeeCCCceEE
Q 012799          428 MSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       428 ~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                              .|+||.+++++.+.|....|
T Consensus       331 --------tF~Pdsr~~~svSs~~~~~v  350 (398)
T KOG0771|consen  331 --------TFSPDSRYLASVSSDNEAAV  350 (398)
T ss_pred             --------EEcCCcCcccccccCCceeE
Confidence                    89999999999888877654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=6e-17  Score=135.01  Aligned_cols=230  Identities=17%  Similarity=0.244  Sum_probs=171.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC--cEEEEEC
Q 012799          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--DARIWDV  227 (456)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~  227 (456)
                      ...+..+.|+.+...|..|+.|| .++|+.+...... ........|..+-|+.       .+++..+.+.  .++++++
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~-~~~~~~~~IvEmLFSS-------SLvaiV~~~qpr~Lkv~~~   75 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF-SKDTEGVSIVEMLFSS-------SLVAIVSIKQPRKLKVVHF   75 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh-cccCCCeEEEEeeccc-------ceeEEEecCCCceEEEEEc
Confidence            34567777999999999999998 5777776544322 1222334466666654       5666665544  4999999


Q ss_pred             CCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecC---CcceEEEEecCcceeeeccccCCC
Q 012799          228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGH---GHWVNSLALSTEYALRTGAFDHTG  304 (456)
Q Consensus       228 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~  304 (456)
                      +.+..+..+. ...+|.++.++.+ +|+++-.+. |+|||+++.+.+.++...   ...+.++++++.+           
T Consensus        76 Kk~~~ICe~~-fpt~IL~VrmNr~-RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-----------  141 (391)
T KOG2110|consen   76 KKKTTICEIF-FPTSILAVRMNRK-RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-----------  141 (391)
T ss_pred             ccCceEEEEe-cCCceEEEEEccc-eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCC-----------
Confidence            8888777765 5678999999877 455554444 999999999999888643   3335555555442           


Q ss_pred             CccCChHHHHHHHHhhhhhccCCCCCEEEE--EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCC
Q 012799          305 KQYSSPEEMKKAALERYNKIKGNAPERLVS--GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK  382 (456)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg  382 (456)
                                               .+++.  ....|.|.+||..+- .+...+..|++.+.+++|+++|.+|||+++.|
T Consensus       142 -------------------------~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKG  195 (391)
T KOG2110|consen  142 -------------------------CYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKG  195 (391)
T ss_pred             -------------------------ceEEecCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCc
Confidence                                     23443  234789999996544 45666789999999999999999999999999


Q ss_pred             c-EEEEeCCCCeEEEEEecccc--cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          383 S-IKLWNGTTGKFVAVFRGHVG--PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       383 ~-i~iwd~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                      + |||+.+.+|+.+..|+....  .|.++                           +|+||+++|++.|..++|.|
T Consensus       196 TVIRVf~v~~G~kl~eFRRG~~~~~IySL---------------------------~Fs~ds~~L~~sS~TeTVHi  244 (391)
T KOG2110|consen  196 TVIRVFSVPEGQKLYEFRRGTYPVSIYSL---------------------------SFSPDSQFLAASSNTETVHI  244 (391)
T ss_pred             eEEEEEEcCCccEeeeeeCCceeeEEEEE---------------------------EECCCCCeEEEecCCCeEEE
Confidence            6 89999999999999985544  45556                           89999999999999999987

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=2.4e-19  Score=153.33  Aligned_cols=212  Identities=18%  Similarity=0.311  Sum_probs=172.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  228 (456)
                      ..-..+.+.++.+|++++.|+..|.+..+|+.+++....  ..-...|.++.|..     +.++||++ ...-++|||- 
T Consensus       128 ~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E--i~v~Etv~Dv~~LH-----neq~~AVA-QK~y~yvYD~-  198 (545)
T KOG1272|consen  128 PEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE--INVMETVRDVTFLH-----NEQFFAVA-QKKYVYVYDN-  198 (545)
T ss_pred             cccCCeeeeecCCccEEEecCCccceeeeecccceeeee--eehhhhhhhhhhhc-----chHHHHhh-hhceEEEecC-
Confidence            345567899999999999999999999999999987642  22345678888876     55566555 4578999994 


Q ss_pred             CCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCcc
Q 012799          229 LRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY  307 (456)
Q Consensus       229 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  307 (456)
                      .|..+..++.| ..|..+.|.|.. .|++++..|.++.-|+.+|+.+..+....+.+..+.-+|-..             
T Consensus       199 ~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-------------  264 (545)
T KOG1272|consen  199 NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-------------  264 (545)
T ss_pred             CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-------------
Confidence            56667777644 568899999998 788888999999999999999999988888888888888743             


Q ss_pred             CChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEE
Q 012799          308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (456)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw  387 (456)
                                             .+-+|...|+|.+|... ...++.++..|.++|.++++.++|+|+||.+.|..++||
T Consensus       265 -----------------------Vih~GhsnGtVSlWSP~-skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIW  320 (545)
T KOG1272|consen  265 -----------------------VIHLGHSNGTVSLWSPN-SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIW  320 (545)
T ss_pred             -----------------------eEEEcCCCceEEecCCC-CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEe
Confidence                                   38899999999999954 456677788999999999999999999999999999999


Q ss_pred             eCCCCeEEEEEecccccEEEE
Q 012799          388 NGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       388 d~~~~~~~~~~~~~~~~v~~i  408 (456)
                      |++....+.++.. .-+...+
T Consensus       321 DlR~~~ql~t~~t-p~~a~~l  340 (545)
T KOG1272|consen  321 DLRNFYQLHTYRT-PHPASNL  340 (545)
T ss_pred             eeccccccceeec-CCCcccc
Confidence            9998877666654 2344444

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.79  E-value=2.5e-17  Score=134.63  Aligned_cols=233  Identities=19%  Similarity=0.298  Sum_probs=178.7

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc---ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  183 (456)
                      -.++|+|.+|++|+..+|.+.....|.||.....+   ..+++..|...|+++.|+|..+.|++|+.|..-.+|....+.
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            46789999999999999999999999999987654   567888999999999999999999999999999999984443


Q ss_pred             Cc--cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEE----EEecCcCccEEEEEeCCCC-eEEE
Q 012799          184 PS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV----ICLSGHTLAVTCVKWGGDG-VIYT  256 (456)
Q Consensus       184 ~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~-~l~~  256 (456)
                      .-  ...+..+....+++.|+|     .++.|++|+....|.+|-++...--    ..-+.+...|++++|+|++ .+++
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP-----~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSP-----KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             eeccceeEEEeccceeeEeecC-----cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence            21  114567889999999999     8899999999999999987654322    1224567889999999999 8899


Q ss_pred             EeCCCcEEEEECC-----C-------------CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799          257 GSQDCTIKVWETT-----Q-------------GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (456)
Q Consensus       257 ~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (456)
                      |+.|+..++|..-     +             |+++.++....+.+..+.|+|.                          
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s--------------------------  217 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS--------------------------  217 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC--------------------------
Confidence            9999999998641     1             2223334345567777777776                          


Q ss_pred             hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC
Q 012799          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD  381 (456)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d  381 (456)
                                ++.|+-.+.|..+.+-|.....+.........-+..++.|-.+.. ++.++.|
T Consensus       218 ----------G~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~~  269 (361)
T KOG1523|consen  218 ----------GNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENS-VVAAGYD  269 (361)
T ss_pred             ----------CCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCc-eeecCCC
Confidence                      777999999999999996665544443333346677777765443 4444444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=9e-18  Score=155.68  Aligned_cols=228  Identities=21%  Similarity=0.209  Sum_probs=157.2

Q ss_pred             CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCCccccccCcccceEEEEecccc
Q 012799          129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH  205 (456)
Q Consensus       129 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  205 (456)
                      +..|++||.+... ...+..|...+..++|+|||+.|+.++.+   ..|.+||+.+++...  +....+....++|+|  
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~--l~~~~g~~~~~~wSP--  257 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV--VASFRGHNGAPAFSP--  257 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE--EecCCCccCceeECC--
Confidence            4689999987554 55667788899999999999999987654   369999998876432  122222344688999  


Q ss_pred             cCCCCCEEEEEe-CCCcEEEE--ECCCCeEEEEecCcCccEEEEEeCCCC-eEE-EEeCCCcEEEEECCCC-eEEEEeec
Q 012799          206 LNAPCRRFVSAS-KDGDARIW--DVSLRKCVICLSGHTLAVTCVKWGGDG-VIY-TGSQDCTIKVWETTQG-KLIRELKG  279 (456)
Q Consensus       206 ~~~~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~i~iwd~~~~-~~~~~~~~  279 (456)
                         +|+.|+.++ .+|.+.||  |+.++. ...+..+...+....|+|+| .++ ++..+|...+|++... .....+ .
T Consensus       258 ---DG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~  332 (429)
T PRK01742        258 ---DGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G  332 (429)
T ss_pred             ---CCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c
Confidence               999888765 57765555  665555 34455666778899999999 455 4446788888876432 222222 2


Q ss_pred             CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc
Q 012799          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (456)
Q Consensus       280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  359 (456)
                      +..  ....|+|+                                    ++.++..+.++ +.+||+..+..... ...+
T Consensus       333 ~~~--~~~~~SpD------------------------------------G~~ia~~~~~~-i~~~Dl~~g~~~~l-t~~~  372 (429)
T PRK01742        333 GRG--YSAQISAD------------------------------------GKTLVMINGDN-VVKQDLTSGSTEVL-SSTF  372 (429)
T ss_pred             CCC--CCccCCCC------------------------------------CCEEEEEcCCC-EEEEECCCCCeEEe-cCCC
Confidence            222  34566666                                    56677776654 56689766543221 1121


Q ss_pred             cccEeEEEECCCCCEEEEEECCCcEEEEeC--CCCeEEEEEecccccEEEE
Q 012799          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNG--TTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~i  408 (456)
                        ....+.|+|||++|++++.+|...+|++  .+|+.+..+..|.+.+..+
T Consensus       373 --~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p  421 (429)
T PRK01742        373 --LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFP  421 (429)
T ss_pred             --CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCc
Confidence              2356789999999999999998888875  3588888888888888777

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=6.2e-18  Score=143.34  Aligned_cols=207  Identities=22%  Similarity=0.322  Sum_probs=146.2

Q ss_pred             EEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc-c
Q 012799          112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL-S  190 (456)
Q Consensus       112 ~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~  190 (456)
                      .+++|+++|..|++|+.||++|||+..+...+.....|...|.++.|+|||++|++.+.| ..+||+.+++..+.... .
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            789999999999999999999999998888888888899999999999999999999999 89999999996554322 1


Q ss_pred             CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCC
Q 012799          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ  270 (456)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~  270 (456)
                      ..+.....+.|..     ++      .. -.+++....                    .|.+.+..    ..+.+|+-..
T Consensus       227 ~k~~~~~~cRF~~-----d~------~~-~~l~laa~~--------------------~~~~~v~~----~~~~~w~~~~  270 (398)
T KOG0771|consen  227 SKDEMFSSCRFSV-----DN------AQ-ETLRLAASQ--------------------FPGGGVRL----CDISLWSGSN  270 (398)
T ss_pred             ccchhhhhceecc-----cC------CC-ceEEEEEec--------------------CCCCceeE----EEeeeecccc
Confidence            1222233333333     11      00 112221110                    00001110    1133444321


Q ss_pred             CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC
Q 012799          271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK  350 (456)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  350 (456)
                      --..++.......|.+++++++                                    +++++.|+.||.|.+++...-+
T Consensus       271 ~l~~~~~~~~~~siSsl~VS~d------------------------------------Gkf~AlGT~dGsVai~~~~~lq  314 (398)
T KOG0771|consen  271 FLRLRKKIKRFKSISSLAVSDD------------------------------------GKFLALGTMDGSVAIYDAKSLQ  314 (398)
T ss_pred             ccchhhhhhccCcceeEEEcCC------------------------------------CcEEEEeccCCcEEEEEeceee
Confidence            1111111123346899999988                                    6679999999999999987766


Q ss_pred             CCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799          351 QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (456)
Q Consensus       351 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  391 (456)
                      ........|...|+.+.|+||.+++++.+.|....+..+.-
T Consensus       315 ~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  315 RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            66666788999999999999999999999998888887653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=6.5e-17  Score=127.17  Aligned_cols=209  Identities=17%  Similarity=0.273  Sum_probs=151.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQT---------GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (456)
Q Consensus       152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i  222 (456)
                      .|.+-+|+|.+++|++|..+|.|.+..+++         ++.......+|.++++.++|..       .+|++|+. |.|
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-------~~Lls~gd-G~V   83 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-------DFLLSGGD-GLV   83 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-------hheeeccC-ceE
Confidence            355668899999999999999999998864         2222234578999999999975       45666655 999


Q ss_pred             EEEECCCCeE------EEEe--cC-----cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEE
Q 012799          223 RIWDVSLRKC------VICL--SG-----HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA  288 (456)
Q Consensus       223 ~iwd~~~~~~------~~~~--~~-----~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  288 (456)
                      +-|..+....      +...  .-     .-..|+++-..|.. .++.++.|+.++.||+++|+..+++++|.+.+.++.
T Consensus        84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv  163 (325)
T KOG0649|consen   84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV  163 (325)
T ss_pred             EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence            9997653221      1111  11     12458889999865 666677999999999999999999999999999998


Q ss_pred             ecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc--------ccccc-
Q 012799          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT--------RMTGH-  359 (456)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~~~-  359 (456)
                      ....                                    ...+++|++||++++||.++.+....        .+..| 
T Consensus       164 ~R~~------------------------------------~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~  207 (325)
T KOG0649|consen  164 GRNA------------------------------------NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW  207 (325)
T ss_pred             eccc------------------------------------CcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence            7433                                    33499999999999999887653221        11222 


Q ss_pred             cccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      ...|-+++.  +..+|+.|+ .-.+.+|++++.+...++. -..++..+
T Consensus       208 g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v  252 (325)
T KOG0649|consen  208 GKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLV  252 (325)
T ss_pred             CceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe-cccceeEe
Confidence            235666666  456888775 4569999999988877765 33455555

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=4.7e-16  Score=129.74  Aligned_cols=236  Identities=14%  Similarity=0.179  Sum_probs=178.6

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCCCc
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA--GELQCWDPQTGKPS  185 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~  185 (456)
                      ...+..+.|+.+...|..|+.|| -++|+.+..............|.-+-|+  ..++|..+.+  +.+++++.+.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence            45677788999999999999998 7888877655433333333445566665  4466665554  35999999888776


Q ss_pred             cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC---cCccEEEEEeCCCC-eEEE--EeC
Q 012799          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---HTLAVTCVKWGGDG-VIYT--GSQ  259 (456)
Q Consensus       186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~-~l~~--~~~  259 (456)
                      +...  ....|.++.+..       ++|+++-.+. |+|||++..+.+.++..   +...+.++..++.+ +++.  ...
T Consensus        82 Ce~~--fpt~IL~VrmNr-------~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t  151 (391)
T KOG2110|consen   82 CEIF--FPTSILAVRMNR-------KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT  151 (391)
T ss_pred             EEEe--cCCceEEEEEcc-------ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC
Confidence            6433  356688888854       6777777654 99999999999988753   34456666666665 5554  334


Q ss_pred             CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (456)
Q Consensus       260 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  339 (456)
                      .|.|.+||..+-+.+..+..|.+.+.+++|+++                                    |.+++++++.|
T Consensus       152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~------------------------------------G~llATASeKG  195 (391)
T KOG2110|consen  152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPD------------------------------------GTLLATASEKG  195 (391)
T ss_pred             CceEEEEEcccceeeeEEEecCCceeEEEECCC------------------------------------CCEEEEeccCc
Confidence            689999999999999999999999999999998                                    66699999999


Q ss_pred             c-EEEEecCCCCCCccccccc-cccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799          340 T-MFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       340 ~-i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  392 (456)
                      + ||+|.+..++.....-+|- ...|.+++|+|++++|++.+..++|++|.+...
T Consensus       196 TVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  196 TVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             eEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            7 6899987766544433332 345889999999999999999999999998753

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=8.2e-17  Score=135.14  Aligned_cols=243  Identities=13%  Similarity=0.157  Sum_probs=181.7

Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC------CCCccccccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT------GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (456)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~  218 (456)
                      .+.+|.+.|.++.|+.++++|++|+.|..+++|+++.      .+++...-..|...|.+++|..     ....+++|+.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-----~N~~~~SG~~  125 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-----ENRFLYSGER  125 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-----CCeeEecCCC
Confidence            3458999999999999999999999999999999863      3444434456778999999987     7788999999


Q ss_pred             CCcEEEEECCCCeEEEEecC--cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCe-EEEE--eecCCcceEEEEecCc
Q 012799          219 DGDARIWDVSLRKCVICLSG--HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK-LIRE--LKGHGHWVNSLALSTE  292 (456)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~--~~~~~~~i~~~~~~~~  292 (456)
                      +++|..-|+++.+.+..+..  ..+.|..+..+|.. .|++.+.+|.|.+||.+... .+..  .........++-|+|.
T Consensus       126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE  205 (609)
T ss_pred             cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence            99999999999998887753  23589999999955 99999999999999998754 2221  1223445666777776


Q ss_pred             ceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc------cccEeEE
Q 012799          293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH------QQLVNHV  366 (456)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~v~~~  366 (456)
                      .                                   +.+|++.+..+-+.+||.+....++....+.      ...-.++
T Consensus       206 ~-----------------------------------P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~  250 (609)
T KOG4227|consen  206 T-----------------------------------PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGS  250 (609)
T ss_pred             C-----------------------------------ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhe
Confidence            2                                   5668999999999999988776554433221      1223567


Q ss_pred             EECCCCCEEEEEECCCcEEEEeCCCCeE-EEEEecccc-------cEEEEEeeeeeeecCCCCceeeecccccccceeEe
Q 012799          367 YFSPDGQWVASASFDKSIKLWNGTTGKF-VAVFRGHVG-------PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS  438 (456)
Q Consensus       367 ~~sp~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~-------~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  438 (456)
                      .|+|+|+.+.+--....-.+||+.+.++ +..+. |..       .+.++                           +|-
T Consensus       251 ~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~---------------------------~F~  302 (609)
T KOG4227|consen  251 LWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSM---------------------------TFI  302 (609)
T ss_pred             eeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeee---------------------------eee
Confidence            8999999988876666777888877554 22332 322       22233                           555


Q ss_pred             cCCCeEEEeeCCCceEEC
Q 012799          439 ADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       439 ~dg~~l~s~s~Dg~v~iW  456 (456)
                      .| ..+++|+.+=.|+||
T Consensus       303 ~D-~~v~tGSD~~~i~~W  319 (609)
T KOG4227|consen  303 DD-YTVATGSDHWGIHIW  319 (609)
T ss_pred             cc-eeeeccCcccceEEE
Confidence            44 459999999999999

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.1e-16  Score=144.92  Aligned_cols=280  Identities=19%  Similarity=0.228  Sum_probs=196.8

Q ss_pred             CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCC
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG---KHLVSGSKAGELQCWDPQTG  182 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~dg~i~vwd~~~~  182 (456)
                      |-+..-..-.|++|+++++.... ..|.||...++.++..+.+|..+++.+.+.|..   .++++++.||.|++||...+
T Consensus        14 g~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~   92 (792)
T KOG1963|consen   14 GRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG   92 (792)
T ss_pred             cccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence            33333344578999998887764 489999999999999999999999999999843   47789999999999999988


Q ss_pred             CCccccccCcccceEEEEecccccCCCCCEEEEEeC-CC------------cEEEEECCCC--eEEEEecCcCccEEEEE
Q 012799          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DG------------DARIWDVSLR--KCVICLSGHTLAVTCVK  247 (456)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg------------~i~iwd~~~~--~~~~~~~~~~~~v~~~~  247 (456)
                      ......  ....++..+.+.|.....+  .++..+. |.            .++-+.+.+.  .....+.++.. -.++.
T Consensus        93 ~Llkt~--~~~~~v~~~~~~~~~a~~s--~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~  167 (792)
T KOG1963|consen   93 ELLKTF--DNNLPVHALVYKPAQADIS--ANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIV  167 (792)
T ss_pred             EEEEEE--ecCCceeEEEechhHhCcc--ceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEE
Confidence            766422  2233444554444322211  2221111 11            1111111110  00011112222 45677


Q ss_pred             eCCCCeEEEEeCCCcEEEEECCCCeEEE----EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799          248 WGGDGVIYTGSQDCTIKVWETTQGKLIR----ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (456)
Q Consensus       248 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (456)
                      .++.|.+.....+..+.+|+........    .-..|...+++.+++|.                               
T Consensus       168 ~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn-------------------------------  216 (792)
T KOG1963|consen  168 DNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN-------------------------------  216 (792)
T ss_pred             EcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccc-------------------------------
Confidence            8888877777778889999988754111    11235556899999998                               


Q ss_pred             ccCCCCCEEEEEeCCCcEEEEecCC---CCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          324 IKGNAPERLVSGSDDFTMFLWEPAV---SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       324 ~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                           ++++++|..||.|.+|.--.   .......+.-|...|++++|+++|.+|.+|+..|.+.+|.+.+++ .+-+..
T Consensus       217 -----~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPR  290 (792)
T KOG1963|consen  217 -----ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPR  290 (792)
T ss_pred             -----cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccc
Confidence                 56699999999999997322   223345567788899999999999999999999999999999988 444556


Q ss_pred             ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       401 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                      -.++|..+                           .+|||+.+.+..-.|+.|.+
T Consensus       291 Lgs~I~~i---------------------------~vS~ds~~~sl~~~DNqI~l  318 (792)
T KOG1963|consen  291 LGSPILHI---------------------------VVSPDSDLYSLVLEDNQIHL  318 (792)
T ss_pred             cCCeeEEE---------------------------EEcCCCCeEEEEecCceEEE
Confidence            77899999                           88999999999999998865

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=1.9e-15  Score=123.74  Aligned_cols=237  Identities=12%  Similarity=0.153  Sum_probs=162.4

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEE-EeCC------CeEEEEeCCCC
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKA------GELQCWDPQTG  182 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d------g~i~vwd~~~~  182 (456)
                      ...+++|+.|..-+++|..+| .+||+.+.-+.......+.+.+.-+..--..++|+. ||.+      ..+.|||=...
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            345599999999999998776 999998864443333333333222222223445554 3333      46999994444


Q ss_pred             CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC-CCeEEEEecCcC--ccEEEEEeCCCC-eEEE-E
Q 012799          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVICLSGHT--LAVTCVKWGGDG-VIYT-G  257 (456)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~--~~v~~~~~~~~~-~l~~-~  257 (456)
                      +++  .......+|.++.+.+       ..+++.-. +.|++|... ..+.++.+....  ....+++-..+. .|+. |
T Consensus        86 ~~i--~el~f~~~I~~V~l~r-------~riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg  155 (346)
T KOG2111|consen   86 RCI--IELSFNSEIKAVKLRR-------DRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG  155 (346)
T ss_pred             cEE--EEEEeccceeeEEEcC-------CeEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC
Confidence            443  3445678899999876       56666655 789999987 455555543222  223333322233 3332 5


Q ss_pred             eCCCcEEEEECCCCeE--EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799          258 SQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (456)
                      -.-|.|++-|+...+.  ...+..|.+.|.+++++.+                                    |..++++
T Consensus       156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~------------------------------------Gt~vATa  199 (346)
T KOG2111|consen  156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ------------------------------------GTLVATA  199 (346)
T ss_pred             CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC------------------------------------ccEEEEe
Confidence            5679999999987655  4778899999999999988                                    5669999


Q ss_pred             eCCCc-EEEEecCCCCCCccccccc-cccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe
Q 012799          336 SDDFT-MFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (456)
Q Consensus       336 ~~dg~-i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~  393 (456)
                      +..|+ |+|||..++......-.|- ...|.+++|||++.+||++|..|+++||.++...
T Consensus       200 StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  200 STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            99997 7999987776554433332 3569999999999999999999999999987643

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.4e-17  Score=143.56  Aligned_cols=250  Identities=20%  Similarity=0.285  Sum_probs=193.7

Q ss_pred             eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (456)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i  222 (456)
                      ...+..|.+.|..+.|+..|..|++|+.|..|.+||+..++.......+|...|....|.|..   +...+++.+.||.+
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s---~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS---GDRTIVTSSRDGQV  211 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC---CCcCceeccccCce
Confidence            356778999999999999999999999999999999999998888889999999999999955   67889999999999


Q ss_pred             EEEECCCCeE---EEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEee---cCCc---ceEEEEecC
Q 012799          223 RIWDVSLRKC---VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELK---GHGH---WVNSLALST  291 (456)
Q Consensus       223 ~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~---~i~~~~~~~  291 (456)
                      ++=.+.....   ...+..|.++|..++..|+.  .|++++.|+.+.-+|++.+.+...+.   .+..   ....++..|
T Consensus       212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence            9887643322   34456799999999999987  89999999999999999876544332   1222   456667666


Q ss_pred             cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC-----ccccc------ccc
Q 012799          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-----KTRMT------GHQ  360 (456)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~------~~~  360 (456)
                      ..                                   ...+++|+.|..+++||.+.-...     +..+.      ...
T Consensus       292 ~n-----------------------------------t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~  336 (559)
T KOG1334|consen  292 RN-----------------------------------TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDP  336 (559)
T ss_pred             CC-----------------------------------ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCc
Confidence            52                                   446899999999999997653321     12222      223


Q ss_pred             ccEeEEEECCCCCEEEEEECCCcEEEEeCCC--C----------eEEE-EEecccc--cEEEEEeeeeeeecCCCCceee
Q 012799          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTT--G----------KFVA-VFRGHVG--PVYQIRFELIYCFRYPSNFYCV  425 (456)
Q Consensus       361 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~--~----------~~~~-~~~~~~~--~v~~i~~~~~~~~~~~~~~~~~  425 (456)
                      -.|++++|+.++.-|.+.-.|-.|+++.-.-  |          ..+. .+++|..  .|..+.|               
T Consensus       337 v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNF---------------  401 (559)
T KOG1334|consen  337 VNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNF---------------  401 (559)
T ss_pred             ccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeee---------------
Confidence            4689999998776666667788899995332  3          2233 3778865  5666655               


Q ss_pred             ecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          426 VDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       426 ~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                 |.|...|+++||.=|.|.||
T Consensus       402 -----------fGPrsEyVvSGSDCGhIFiW  421 (559)
T KOG1334|consen  402 -----------FGPRSEYVVSGSDCGHIFIW  421 (559)
T ss_pred             -----------ccCccceEEecCccceEEEE
Confidence                       89999999999999999999

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=7.8e-17  Score=151.30  Aligned_cols=245  Identities=18%  Similarity=0.292  Sum_probs=177.7

Q ss_pred             cccEEEEEECC--CCCeEEEEECCCcEEEEeCC-CC----cceeEEe-------cCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799          108 TEAVLSVAFSP--DGRQLASGSGDTTVRLWDLN-TQ----TPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKAGE  173 (456)
Q Consensus       108 ~~~V~~~~~s~--~~~~l~~~~~d~~v~vwd~~-~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~  173 (456)
                      ...|+.+.+-.  |..++++|+.||.|+||+-- .+    +.+..+.       +..+.-.-+.|.....+|+++|.-..
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence            35788888865  45689999999999999632 21    2222221       11222245678876667777777889


Q ss_pred             EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe---EEEEecCcCcc--EEEEEe
Q 012799          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLA--VTCVKW  248 (456)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~--v~~~~~  248 (456)
                      |+|||.........+..+....++++.-...    .|+.+++|..||.|++||.+...   .+...+.|+..  |..+.+
T Consensus      1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~----~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLV----HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred             EEEEecccceeEeecccCCCccceeeccccc----CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence            9999999887776666666777777765442    47899999999999999987543   46667788877  999999


Q ss_pred             CCCC--eEEEEeCCCcEEEEECCCCeEE--EEeecC---CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799          249 GGDG--VIYTGSQDCTIKVWETTQGKLI--RELKGH---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (456)
Q Consensus       249 ~~~~--~l~~~~~dg~i~iwd~~~~~~~--~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (456)
                      .+.|  .+++|+.+|.|++||++.....  .++..|   ++..+++..++.                             
T Consensus      1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h----------------------------- 1315 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH----------------------------- 1315 (1387)
T ss_pred             ecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccC-----------------------------
Confidence            9888  7999999999999999984221  122222   235888888887                             


Q ss_pred             hhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc-----cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe
Q 012799          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-----MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (456)
Q Consensus       322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~  393 (456)
                             ...+++|+. +.|.||++........+     +....+.+.|++|+|..-++|+|+.|..|.||.....+
T Consensus      1316 -------apiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1316 -------APIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             -------CCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence                   344888887 99999996544322211     11234567999999999999999999999999876654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=3e-15  Score=134.83  Aligned_cols=239  Identities=13%  Similarity=0.201  Sum_probs=156.5

Q ss_pred             cccEEEEEECCCCCeEEEEE-CCCcEEEEeCCC-Ccc--eeEEecCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCC
Q 012799          108 TEAVLSVAFSPDGRQLASGS-GDTTVRLWDLNT-QTP--MFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTG  182 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~-~d~~v~vwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~  182 (456)
                      .+....++++|++++|++++ .++.|.+|+++. ++.  .... ........++|+|+++++++++. ++.|.+|++++.
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence            35567899999999887765 578899999873 322  1222 23345678999999999888765 789999999743


Q ss_pred             CCccccc--cCcccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCeEEE-------EecCcCccEEEEEeCCCC
Q 012799          183 KPSGNPL--SGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVI-------CLSGHTLAVTCVKWGGDG  252 (456)
Q Consensus       183 ~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-------~~~~~~~~v~~~~~~~~~  252 (456)
                      .......  ..+......++++|     +++++++++ .++.|.+||+.+...+.       ... .......+.|+|++
T Consensus       113 g~~~~~~~~~~~~~~~~~~~~~p-----~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg  186 (330)
T PRK11028        113 GIPVAPIQIIEGLEGCHSANIDP-----DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQ  186 (330)
T ss_pred             CCCCCceeeccCCCcccEeEeCC-----CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCC
Confidence            2221111  11223456677888     888886555 56899999997633221       111 23345789999999


Q ss_pred             -eEEEEeC-CCcEEEEECCC--Ce--EEEEeecCC------cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799          253 -VIYTGSQ-DCTIKVWETTQ--GK--LIRELKGHG------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (456)
Q Consensus       253 -~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (456)
                       +++++.. ++.|.+||+..  ++  .+..+....      .....+.++|+                            
T Consensus       187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd----------------------------  238 (330)
T PRK11028        187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD----------------------------  238 (330)
T ss_pred             CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC----------------------------
Confidence             6666665 89999999973  32  233332111      11224566665                            


Q ss_pred             hhhccCCCCCEEEEEe-CCCcEEEEecCCCCCCccccccc---cccEeEEEECCCCCEEEEEEC-CCcEEEEeCC
Q 012799          321 YNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGH---QQLVNHVYFSPDGQWVASASF-DKSIKLWNGT  390 (456)
Q Consensus       321 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~  390 (456)
                              +++++++. .++.|.+|++........ +.++   ......+.++|+|++|+++.. +++|.+|++.
T Consensus       239 --------g~~lyv~~~~~~~I~v~~i~~~~~~~~-~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        239 --------GRHLYACDRTASLISVFSVSEDGSVLS-FEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             --------CCEEEEecCCCCeEEEEEEeCCCCeEE-EeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence                    55577764 478999999865432221 1122   124567899999999888765 8999999874

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.75  E-value=5.7e-17  Score=141.43  Aligned_cols=208  Identities=18%  Similarity=0.262  Sum_probs=164.5

Q ss_pred             CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEE
Q 012799          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS  200 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~  200 (456)
                      ..|+.++.||.+.+.+ ..++....+..|.+.+.+-.|+|||.-|++++.||.|++|.-. |- +...+......|.+++
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GM-LRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GM-LRSTVVQNEESIRCAR  152 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-ch-HHHHHhhcCceeEEEE
Confidence            4688888999999987 4577778888999999999999999999999999999999853 33 2224556678899999


Q ss_pred             ecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeec
Q 012799          201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG  279 (456)
Q Consensus       201 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~  279 (456)
                      |.|     +.+.++.+.. +.+.|=.+.....+...+.|.+-|.++.|++.. .+++|+.|-..++||- .|..+..-..
T Consensus       153 W~p-----~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~  225 (737)
T KOG1524|consen  153 WAP-----NSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAA  225 (737)
T ss_pred             ECC-----CCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCCh
Confidence            999     5555544433 567777777777777888999999999999987 9999999999999995 4677777778


Q ss_pred             CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc
Q 012799          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (456)
Q Consensus       280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  359 (456)
                      |..+|++++|.|+..                                     ++.++. .+++            .-...
T Consensus       226 ~ey~ITSva~npd~~-------------------------------------~~v~S~-nt~R------------~~~p~  255 (737)
T KOG1524|consen  226 EEYAITSVAFNPEKD-------------------------------------YLLWSY-NTAR------------FSSPR  255 (737)
T ss_pred             hccceeeeeeccccc-------------------------------------eeeeee-eeee------------ecCCC
Confidence            999999999999832                                     333332 1222            12234


Q ss_pred             cccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799          360 QQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (456)
Q Consensus       360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  388 (456)
                      .+.|..++||+||..++.|+..|.+.+=.
T Consensus       256 ~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  256 VGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             ccceEEEEEcCCCceeeccccCceEEEee
Confidence            57799999999999999999999776544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=1.6e-16  Score=147.44  Aligned_cols=224  Identities=21%  Similarity=0.231  Sum_probs=153.9

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECC---CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCe
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGE  173 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~  173 (456)
                      +...+.+..|...+.+.+|+|||+.|+.++.+   ..|++||+.+++... +....+....++|+|||+.|+.++ .+|.
T Consensus       193 g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~  271 (429)
T PRK01742        193 GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGV  271 (429)
T ss_pred             CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCc
Confidence            33456678899999999999999999987654   369999998775422 222233345789999999888764 6786


Q ss_pred             EEEE--eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCe-EEEEecCcCccEEEEEeC
Q 012799          174 LQCW--DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRK-CVICLSGHTLAVTCVKWG  249 (456)
Q Consensus       174 i~vw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~  249 (456)
                      +.||  |+.++...  .+..+...+....|+|     +|+.++.++ .+|...+|++.... ....+ .+..  ....|+
T Consensus       272 ~~Iy~~d~~~~~~~--~lt~~~~~~~~~~wSp-----DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~S  341 (429)
T PRK01742        272 LNIYVMGANGGTPS--QLTSGAGNNTEPSWSP-----DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQIS  341 (429)
T ss_pred             EEEEEEECCCCCeE--eeccCCCCcCCEEECC-----CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCC
Confidence            6555  66655543  3455666788899999     888777655 57888888764321 12222 3333  457899


Q ss_pred             CCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799          250 GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (456)
Q Consensus       250 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (456)
                      |+| .++.++.++ +.+||+.+++........  ....+.|+|+                                    
T Consensus       342 pDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPd------------------------------------  382 (429)
T PRK01742        342 ADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPN------------------------------------  382 (429)
T ss_pred             CCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCC------------------------------------
Confidence            999 666666654 666999888654322221  2345667776                                    


Q ss_pred             CCEEEEEeCCCcEEEEecC-CCCCCccccccccccEeEEEECCC
Q 012799          329 PERLVSGSDDFTMFLWEPA-VSKQPKTRMTGHQQLVNHVYFSPD  371 (456)
Q Consensus       329 ~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~sp~  371 (456)
                      ++.+++++.++...+|++. ........+..|.+.+...+|+|-
T Consensus       383 G~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        383 GIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            6679999889988888753 233455566778888899999984

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.75  E-value=4e-16  Score=127.70  Aligned_cols=220  Identities=23%  Similarity=0.316  Sum_probs=171.2

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEE
Q 012799          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW  225 (456)
Q Consensus       148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  225 (456)
                      --..+|+|.+|++|+..+|.+.....|.||.....+.  ....+..|...|+.++|.|     ..+.|++++.|..-++|
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-----~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-----KSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-----CCCceeEccCCCCcccc
Confidence            3467899999999999999999999999999887662  3346788999999999999     78899999999999999


Q ss_pred             ECCC---CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEE----EEeecCCcceEEEEecCcceeee
Q 012799          226 DVSL---RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLI----RELKGHGHWVNSLALSTEYALRT  297 (456)
Q Consensus       226 d~~~---~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~  297 (456)
                      ....   .++...+..++...+++.|+|.+ .|++|+.-..|.+|-++..+.-    ..-+.+.+.|.++.|+|+..   
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV---  159 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV---  159 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc---
Confidence            9833   34556667789999999999988 9999999999999877654322    12234567899999999854   


Q ss_pred             ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-----------------CCcccccccc
Q 012799          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-----------------QPKTRMTGHQ  360 (456)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~  360 (456)
                                                       .+++|+.|+..++|..--..                 ..........
T Consensus       160 ---------------------------------LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~g  206 (361)
T KOG1523|consen  160 ---------------------------------LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSG  206 (361)
T ss_pred             ---------------------------------eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCC
Confidence                                             49999999999998632110                 1122223456


Q ss_pred             ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe-EEEEEecccccEEEE
Q 012799          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQI  408 (456)
Q Consensus       361 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i  408 (456)
                      +.+..+.|+|+|..|+-.+.|+.+.+-|..... .+.......-|..++
T Consensus       207 gwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~  255 (361)
T KOG1523|consen  207 GWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSV  255 (361)
T ss_pred             CceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceee
Confidence            789999999999999999999999999977654 344333333555555

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=6.9e-16  Score=135.89  Aligned_cols=274  Identities=14%  Similarity=0.236  Sum_probs=199.4

Q ss_pred             CCcccEEEEEECCCCCeE-EEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799          106 GHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l-~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  184 (456)
                      +|...-+.|..+|||+|+ |+|...-.|++||+.+-.....-.-....|.-.-.+.|-..++.-..|.+|.+...- |..
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~h  127 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRH  127 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Cee
Confidence            577788899999999975 567788899999998654433322234455555566666666666778877765432 221


Q ss_pred             ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcE
Q 012799          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTI  263 (456)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i  263 (456)
                      ....+   ...-..++++..    +. -|+.++....|+-++++.|..+..+....+.++++..++.. +|++|+.+|.|
T Consensus       128 y~~RI---P~~GRDm~y~~~----sc-Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V  199 (703)
T KOG2321|consen  128 YRTRI---PKFGRDMKYHKP----SC-DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV  199 (703)
T ss_pred             eeeec---CcCCccccccCC----Cc-cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence            11011   112234555441    22 35555555779999999999999998888999999999966 88888889999


Q ss_pred             EEEECCCCeEEEEeecC------C-----cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799          264 KVWETTQGKLIRELKGH------G-----HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (456)
Q Consensus       264 ~iwd~~~~~~~~~~~~~------~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (456)
                      ..||.+....+.++...      .     ..|+++.|+.+                                    +-.+
T Consensus       200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~------------------------------------gL~~  243 (703)
T KOG2321|consen  200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD------------------------------------GLHV  243 (703)
T ss_pred             EEecchhhhhheeeecccccCCCccccccCcceEEEecCC------------------------------------ceeE
Confidence            99999987776665422      1     23777888766                                    4459


Q ss_pred             EEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCC--CCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      ++|+.+|.+.|||++...+....-.+..-+|..+.|.+.  ++.|++. ....++|||-.+|+....+.. ...++.+  
T Consensus       244 aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~--  319 (703)
T KOG2321|consen  244 AVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDF--  319 (703)
T ss_pred             EeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCce--
Confidence            999999999999999988877776777788999999875  4445554 467899999999999888874 3447777  


Q ss_pred             eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL  453 (456)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v  453 (456)
                                               ++-|++.++++|-+++.+
T Consensus       320 -------------------------C~~p~sGm~f~Ane~~~m  337 (703)
T KOG2321|consen  320 -------------------------CFVPGSGMFFTANESSKM  337 (703)
T ss_pred             -------------------------eeecCCceEEEecCCCcc
Confidence                                     778999999998877654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=2.9e-15  Score=122.71  Aligned_cols=229  Identities=20%  Similarity=0.273  Sum_probs=160.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcc--cceEEEEecccccCCCCCEEEE-EeCC------CcE
Q 012799          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK--KWITGISWEPVHLNAPCRRFVS-ASKD------GDA  222 (456)
Q Consensus       152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~l~~-~~~d------g~i  222 (456)
                      ...+++|+.|...+++|..+| .++|+++--+.... ...+.  -.+..+-|       ..++++. ||.+      ..+
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~-r~~~~~G~~~veMLf-------R~N~laLVGGg~~pky~pNkv   77 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS-RQFIDGGFKIVEMLF-------RSNYLALVGGGSRPKYPPNKV   77 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhh-hccccCchhhhhHhh-------hhceEEEecCCCCCCCCCceE
Confidence            345599999999988887776 89999875433211 11111  12222222       2244443 3332      469


Q ss_pred             EEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECC-CCeEEEEeecCC--cceEEEEecCcceeeecc
Q 012799          223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-QGKLIRELKGHG--HWVNSLALSTEYALRTGA  299 (456)
Q Consensus       223 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~  299 (456)
                      .|||-...+++..+. ...+|.++.+.++. +++ -..+.|++|... +.+.++.+....  ....+++-..+       
T Consensus        78 iIWDD~k~~~i~el~-f~~~I~~V~l~r~r-iVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~-------  147 (346)
T KOG2111|consen   78 IIWDDLKERCIIELS-FNSEIKAVKLRRDR-IVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN-------  147 (346)
T ss_pred             EEEecccCcEEEEEE-eccceeeEEEcCCe-EEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCC-------
Confidence            999977777777775 57899999999884 333 345789999987 445555554322  22223222221       


Q ss_pred             ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE-EeCCCcEEEEecCCCCC-CccccccccccEeEEEECCCCCEEEE
Q 012799          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-GSDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPDGQWVAS  377 (456)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s  377 (456)
                                                   ...|+. |..-|.|.+-|+..... ....+.+|.+.|.|++.+-+|.++||
T Consensus       148 -----------------------------k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vAT  198 (346)
T KOG2111|consen  148 -----------------------------KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVAT  198 (346)
T ss_pred             -----------------------------ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEE
Confidence                                         122333 44568999999876654 34667899999999999999999999


Q ss_pred             EECCCc-EEEEeCCCCeEEEEEecc--cccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceE
Q 012799          378 ASFDKS-IKLWNGTTGKFVAVFRGH--VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLK  454 (456)
Q Consensus       378 ~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~  454 (456)
                      +|..|+ |||||..+|++++.++..  ...|+++                           +||||+.+|+.+|+-|+|.
T Consensus       199 aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i---------------------------aFSp~~s~LavsSdKgTlH  251 (346)
T KOG2111|consen  199 ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI---------------------------AFSPNSSWLAVSSDKGTLH  251 (346)
T ss_pred             eccCcEEEEEEEcCCCcEeeeeecCCchheEEEE---------------------------EeCCCccEEEEEcCCCeEE
Confidence            999996 899999999999998743  3478888                           8999999999999999998


Q ss_pred             E
Q 012799          455 V  455 (456)
Q Consensus       455 i  455 (456)
                      |
T Consensus       252 i  252 (346)
T KOG2111|consen  252 I  252 (346)
T ss_pred             E
Confidence            7

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=3.9e-18  Score=156.03  Aligned_cols=235  Identities=24%  Similarity=0.342  Sum_probs=181.4

Q ss_pred             ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (456)
Q Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~  221 (456)
                      .+..+.+|...|+|+.|...|.++++|+.|..++||..+++.+.. ...+|.+.|+.++.+.     +..++++++.|..
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA-s~rGhs~ditdlavs~-----~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA-SCRGHSGDITDLAVSS-----NNTMIAAASNDKV  255 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc-cCCCCccccchhccch-----hhhhhhhcccCce
Confidence            344566899999999999999999999999999999999988876 7899999999999877     6678999999999


Q ss_pred             EEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEee-----cCCcceEEEEecCcceee
Q 012799          222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK-----GHGHWVNSLALSTEYALR  296 (456)
Q Consensus       222 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~  296 (456)
                      |++|.+..+.++..+.+|.+.|++++|+|-.   +.+.||++++||.+-. +.....     ....-+.++.+...    
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~~----  327 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFENN----  327 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEecccccc-ccccCCCCCCcccccceeeeecccc----
Confidence            9999999999999999999999999999964   7788999999998821 111110     01122222322222    


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC-CEE
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWV  375 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l  375 (456)
                                                      +..+++++.|+.-..|.+..       +..+...+.-+.++.+. .+.
T Consensus       328 --------------------------------~~~f~Tgs~d~ea~n~e~~~-------l~~~~~~lif~t~ssd~~~~~  368 (1113)
T KOG0644|consen  328 --------------------------------GDRFLTGSRDGEARNHEFEQ-------LAWRSNLLIFVTRSSDLSSIV  368 (1113)
T ss_pred             --------------------------------ccccccccCCcccccchhhH-------hhhhccceEEEeccccccccc
Confidence                                            45588999998887776321       22233333333333332 456


Q ss_pred             EEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCC-CeEEEeeCCCceE
Q 012799          376 ASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLK  454 (456)
Q Consensus       376 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~s~s~Dg~v~  454 (456)
                      +++-.+-.+++|++.+|.++..+.+|...+.-+                           .++|-. +...+++.||...
T Consensus       369 ~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvL---------------------------d~Hpfn~ri~msag~dgst~  421 (1113)
T KOG0644|consen  369 VTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVL---------------------------DVHPFNPRIAMSAGYDGSTI  421 (1113)
T ss_pred             eeeeeeeEeeeeecccchhhhhhcccccceeee---------------------------eecCCCcHhhhhccCCCceE
Confidence            777788899999999999999999999999998                           667755 4556889999999


Q ss_pred             EC
Q 012799          455 VT  456 (456)
Q Consensus       455 iW  456 (456)
                      ||
T Consensus       422 iw  423 (1113)
T KOG0644|consen  422 IW  423 (1113)
T ss_pred             ee
Confidence            88

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.73  E-value=9.2e-16  Score=146.42  Aligned_cols=272  Identities=19%  Similarity=0.249  Sum_probs=182.9

Q ss_pred             EeCCCCcceeEEecCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCcc------ccccCcccceEEEEecccccC
Q 012799          135 WDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSG------NPLSGHKKWITGISWEPVHLN  207 (456)
Q Consensus       135 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~  207 (456)
                      |+.+ |..+..+..|...+..++.++.. .++++|+.||+|++|+.+.-....      ..+......+..+...+    
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~---- 1108 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG---- 1108 (1431)
T ss_pred             CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc----
Confidence            5543 67778888899999999988754 999999999999999987532210      01222345677777766    


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCC--e-----EEEEec--CcCccEEEEEeCC--CC-eEEEEeCCCcEEEEECCCCeEEE
Q 012799          208 APCRRFVSASKDGDARIWDVSLR--K-----CVICLS--GHTLAVTCVKWGG--DG-VIYTGSQDCTIKVWETTQGKLIR  275 (456)
Q Consensus       208 ~~~~~l~~~~~dg~i~iwd~~~~--~-----~~~~~~--~~~~~v~~~~~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~  275 (456)
                       .++.+|+++.||.|++.+++..  +     +.....  .....+..-++..  .. .++.+..-+.|..||.++.....
T Consensus      1109 -~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1109 -NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred             -CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence             8899999999999999998752  1     111121  2222233333433  22 67788888999999999877665


Q ss_pred             Eee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCc
Q 012799          276 ELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK  353 (456)
Q Consensus       276 ~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  353 (456)
                      .++  ...+.|++++.+|.                                    ++.++.|+..|.+.+||++-.....
T Consensus      1188 ~lk~~~~hG~vTSi~idp~------------------------------------~~WlviGts~G~l~lWDLRF~~~i~ 1231 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPW------------------------------------CNWLVIGTSRGQLVLWDLRFRVPIL 1231 (1431)
T ss_pred             hhhcCccccceeEEEecCC------------------------------------ceEEEEecCCceEEEEEeecCceee
Confidence            553  35577999999998                                    4569999999999999998766555


Q ss_pred             cccccccccEeEEEECCC---CCEEEE-EE-CCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecc
Q 012799          354 TRMTGHQQLVNHVYFSPD---GQWVAS-AS-FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM  428 (456)
Q Consensus       354 ~~~~~~~~~v~~~~~sp~---~~~l~s-~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~  428 (456)
                      .-..++..+++.+..+|-   ....++ ++ ..+.|.+|++.+|....++....+ +-.+      ....|.+.....+.
T Consensus      1232 sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~-~p~l------s~~~Ps~~~~kp~~ 1304 (1431)
T KOG1240|consen 1232 SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDG-APIL------SYALPSNDARKPDS 1304 (1431)
T ss_pred             cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCC-Ccch------hhhcccccCCCCCc
Confidence            544566678888888773   245444 44 577899999999977776654311 1111      11122221111111


Q ss_pred             cccccceeEecCCCeEEEeeCCCceEEC
Q 012799          429 SCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       429 ~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                       ......++...+..+.+|+.|..||.|
T Consensus      1305 -~~~~~~~~~~~~~~~ltggsd~kIR~w 1331 (1431)
T KOG1240|consen 1305 -LAGISCGVCEKNGFLLTGGSDMKIRKW 1331 (1431)
T ss_pred             -ccceeeecccCCceeeecCCccceeec
Confidence             111112445556799999999999998

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.2e-14  Score=121.07  Aligned_cols=183  Identities=21%  Similarity=0.326  Sum_probs=135.8

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCc
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPS  185 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~  185 (456)
                      +-.+..++|++.-.-+|++..|-.|++|+-.. +....++ .....|+|++|-|. ++.|+.|+.. -|.+|........
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence            45678899999777788999999999999766 4333443 45678999999995 4566666655 5999976532111


Q ss_pred             cc-------------cccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEEEecCcCccEEEEEeCCC
Q 012799          186 GN-------------PLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD  251 (456)
Q Consensus       186 ~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  251 (456)
                      ..             ...+| ..|+++.|.+     ||..+++++. |..|.|||..++.++.......+.++-+.|+|+
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-----dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd  249 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-----DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD  249 (445)
T ss_pred             ccccccccccchhheeCCCC-ceeeEEEEcC-----CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC
Confidence            10             12233 6799999999     8999999876 668999999999887766556778999999999


Q ss_pred             C-eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeecc
Q 012799          252 G-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGA  299 (456)
Q Consensus       252 ~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~  299 (456)
                      + .|+++.-|+..++|+.... ...+-.. ..+.|..-+|+|.+.+....
T Consensus       250 gd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~  298 (445)
T KOG2139|consen  250 GDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFA  298 (445)
T ss_pred             CCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEE
Confidence            9 9999999999999965443 3333333 34489999999997654433

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.71  E-value=3e-15  Score=125.87  Aligned_cols=249  Identities=12%  Similarity=0.164  Sum_probs=186.5

Q ss_pred             CcccEEEEEECCCCC--eEEEEECCCcEEEEeCCCCcceeE------EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799          107 HTEAVLSVAFSPDGR--QLASGSGDTTVRLWDLNTQTPMFK------CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (456)
Q Consensus       107 h~~~V~~~~~s~~~~--~l~~~~~d~~v~vwd~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  178 (456)
                      -...|..++|.-+++  .+...+.|..+..+.+........      ......+|..++..  ...|++|-.+|.+.+|.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence            456778888876654  455555677777777766544333      33456667776654  33688888999999999


Q ss_pred             CCCCCCccc--cccCcccceEEEEecccccCCCCCEEEEEeCC--CcEEEEECCCCeEEEEecCc---------CccEEE
Q 012799          179 PQTGKPSGN--PLSGHKKWITGISWEPVHLNAPCRRFVSASKD--GDARIWDVSLRKCVICLSGH---------TLAVTC  245 (456)
Q Consensus       179 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~---------~~~v~~  245 (456)
                      .+.+.....  ........+..+.-.+.    ....+++||..  ..+.+||++..+.+..-+.-         .-.+++
T Consensus       132 ~k~~d~hss~l~~la~g~g~~~~r~~~~----~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td  207 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLATGPGLYDVRQTDT----DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD  207 (412)
T ss_pred             ccCCccccccceeeecCCceeeeccCCC----CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence            985542110  11112234445544442    33567779988  88999999988777655432         224677


Q ss_pred             EEeCCC--C-eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799          246 VKWGGD--G-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (456)
Q Consensus       246 ~~~~~~--~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (456)
                      +.|.+.  . .|++++.-+.+++||.+.+ +++..+.....++.++...|.                             
T Consensus       208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~-----------------------------  258 (412)
T KOG3881|consen  208 IRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS-----------------------------  258 (412)
T ss_pred             ceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCC-----------------------------
Confidence            888776  4 9999999999999999865 578888888889999998887                             


Q ss_pred             hhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE
Q 012799          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV  397 (456)
Q Consensus       322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  397 (456)
                             ++++++|...|.+..||++........+.+-.+.|+++..+|.+++|+++|-|..|||+|+++.+++..
T Consensus       259 -------gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  259 -------GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             -------CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence                   667999999999999999988887777889999999999999999999999999999999999766543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.4e-16  Score=139.34  Aligned_cols=216  Identities=24%  Similarity=0.340  Sum_probs=163.6

Q ss_pred             eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (456)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i  222 (456)
                      ...+.||.+.|.|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+-.+|...|.++.|.|..   +...+++|..|..|
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t---nnriv~sgAgDk~i  119 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT---NNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC---CCeEEEeccCcceE
Confidence            456789999999999999999999999999999999998888887889999999999999965   66799999999999


Q ss_pred             EEEECCC----------CeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEE----------EeecC
Q 012799          223 RIWDVSL----------RKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIR----------ELKGH  280 (456)
Q Consensus       223 ~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~----------~~~~~  280 (456)
                      +++|+..          ......+..|...|..++..|++  .+.+++.||+|+-+|++......          .+...
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            9999974          23344556788899999999988  89999999999999998742211          01111


Q ss_pred             CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC--------
Q 012799          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP--------  352 (456)
Q Consensus       281 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--------  352 (456)
                      .-...++.++|.                                   ...+|+.|+.|-..++||.+...+.        
T Consensus       200 lielk~ltisp~-----------------------------------rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~  244 (758)
T KOG1310|consen  200 LIELKCLTISPS-----------------------------------RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMN  244 (758)
T ss_pred             hheeeeeeecCC-----------------------------------CCceEEecCCCchhhhhhhhhhccCCCCCcccc
Confidence            123455666665                                   3678999999999999994322110        


Q ss_pred             ---------cccc-cccc-----------ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEE
Q 012799          353 ---------KTRM-TGHQ-----------QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA  396 (456)
Q Consensus       353 ---------~~~~-~~~~-----------~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~  396 (456)
                               +..+ .+|-           ..++-++|+|+|.-|...-..-.|+++|+..++...
T Consensus       245 ~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  245 TCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT  309 (758)
T ss_pred             CCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence                     1111 1221           125667899998876665555679999988776543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=2.1e-14  Score=132.97  Aligned_cols=228  Identities=17%  Similarity=0.165  Sum_probs=152.9

Q ss_pred             cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCCccccccCcccceEEEEecccccC
Q 012799          131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN  207 (456)
Q Consensus       131 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  207 (456)
                      .|.+||.+.... ..+..+...+...+|+|||+.|+..+.   +..+.+|++.+++...  +......+..+.|+|    
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--l~~~~~~~~~~~~SP----  252 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRHNGAPAFSP----  252 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--ccCCCCCcCCeEECC----
Confidence            699999875543 444557778999999999999987543   3579999998876432  222333455688999    


Q ss_pred             CCCCEEEEE-eCCC--cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC-CCc--EEEEECCCCeEEEEeecC
Q 012799          208 APCRRFVSA-SKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ-DCT--IKVWETTQGKLIRELKGH  280 (456)
Q Consensus       208 ~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~  280 (456)
                       +|+.|+.. +.+|  .|++||+.+++... +..+...+....|+|+| .|+..+. ++.  |..+|+.+++. ..+...
T Consensus       253 -DG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~  329 (429)
T PRK03629        253 -DGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE  329 (429)
T ss_pred             -CCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC
Confidence             99888865 4444  58999998876544 33344567889999999 5655554 344  55557766644 333333


Q ss_pred             CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC---CcEEEEecCCCCCCccccc
Q 012799          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD---FTMFLWEPAVSKQPKTRMT  357 (456)
Q Consensus       281 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~  357 (456)
                      ........|+|+                                    +++++..+.+   ..|.+||+..+...  .+.
T Consensus       330 ~~~~~~~~~SpD------------------------------------G~~Ia~~~~~~g~~~I~~~dl~~g~~~--~Lt  371 (429)
T PRK03629        330 GSQNQDADVSSD------------------------------------GKFMVMVSSNGGQQHIAKQDLATGGVQ--VLT  371 (429)
T ss_pred             CCCccCEEECCC------------------------------------CCEEEEEEccCCCceEEEEECCCCCeE--EeC
Confidence            444556778887                                    4456554433   35888897655422  222


Q ss_pred             cccccEeEEEECCCCCEEEEEECCCc---EEEEeCCCCeEEEEEecccccEEEE
Q 012799          358 GHQQLVNHVYFSPDGQWVASASFDKS---IKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       358 ~~~~~v~~~~~sp~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      . ........|+|||++|+.++.++.   +.++++ +|+....+.+|.+.+...
T Consensus       372 ~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p  423 (429)
T PRK03629        372 D-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFP  423 (429)
T ss_pred             C-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCc
Confidence            1 112346789999999999888764   677776 566667777788888777

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.70  E-value=6.3e-17  Score=138.71  Aligned_cols=230  Identities=18%  Similarity=0.245  Sum_probs=189.0

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      ..-..+.++.+|++|+.|+..|.|-.+|..+++....+. -...|.++.|-.+.+++|++-. ..+.|||-..-+.-+  
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~GtElHC--  205 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQK-KYVYVYDNNGTELHC--  205 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhh-ceEEEecCCCcEEee--
Confidence            345678999999999999999999999999998888776 4567899999988888888754 589999965433322  


Q ss_pred             ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEE
Q 012799          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE  267 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd  267 (456)
                      +. ....|..+.|.|.+     -+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+ .+-+|...|+|.+|.
T Consensus       206 lk-~~~~v~rLeFLPyH-----fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS  279 (545)
T KOG1272|consen  206 LK-RHIRVARLEFLPYH-----FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS  279 (545)
T ss_pred             hh-hcCchhhhcccchh-----heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence            22 23568889999955     478899999999999999999999988888899999999977 888999999999999


Q ss_pred             CCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecC
Q 012799          268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (456)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  347 (456)
                      ....+++..+..|.++|.++++.+.                                    |.+++|.+.|..++|||++
T Consensus       280 P~skePLvKiLcH~g~V~siAv~~~------------------------------------G~YMaTtG~Dr~~kIWDlR  323 (545)
T KOG1272|consen  280 PNSKEPLVKILCHRGPVSSIAVDRG------------------------------------GRYMATTGLDRKVKIWDLR  323 (545)
T ss_pred             CCCcchHHHHHhcCCCcceEEECCC------------------------------------CcEEeecccccceeEeeec
Confidence            9999999888889999999999998                                    7779999999999999999


Q ss_pred             CCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799          348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (456)
Q Consensus       348 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  388 (456)
                      ....+.....  .-+...+++|..| +||.+ ....|.||.
T Consensus       324 ~~~ql~t~~t--p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~  360 (545)
T KOG1272|consen  324 NFYQLHTYRT--PHPASNLSLSQKG-LLALS-YGDHVQIWK  360 (545)
T ss_pred             cccccceeec--CCCcccccccccc-ceeee-cCCeeeeeh
Confidence            8775544333  3446778888665 34444 455699994

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.69  E-value=4.1e-15  Score=130.08  Aligned_cols=233  Identities=15%  Similarity=0.153  Sum_probs=148.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccC---cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG---HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (456)
Q Consensus       152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  228 (456)
                      .+....++-.|++|+..-. ..+.+|+.+.+......+..   ......+-.|....-.+.+--++.|-.-|.+.+.|..
T Consensus       125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~  203 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI  203 (636)
T ss_pred             ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence            3444555556777665432 36888888754322211110   0111233344333233366678888888999999876


Q ss_pred             CCeEEEEec----CcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCC--------------eEEEEe--ec--CCcce
Q 012799          229 LRKCVICLS----GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG--------------KLIREL--KG--HGHWV  284 (456)
Q Consensus       229 ~~~~~~~~~----~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~--------------~~~~~~--~~--~~~~i  284 (456)
                      ..+..+.+.    -.+..++|+.|-|.+  .++++-.+|.+++||..-.              ......  ..  ...++
T Consensus       204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv  283 (636)
T KOG2394|consen  204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV  283 (636)
T ss_pred             hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence            532221111    134789999999855  8888999999999986311              000000  00  00111


Q ss_pred             EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEe
Q 012799          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN  364 (456)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  364 (456)
                      ...++...                          ......+.+++.+|++.+.||.++|||..+.. ..-.++.--+...
T Consensus       284 ~~w~~~~g--------------------------~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLL  336 (636)
T KOG2394|consen  284 ARWHIGEG--------------------------SINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLL  336 (636)
T ss_pred             ceeEeccc--------------------------cccceeEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhhccceE
Confidence            11111110                          00111233458889999999999999976533 3333444446789


Q ss_pred             EEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeee
Q 012799          365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL  412 (456)
Q Consensus       365 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~  412 (456)
                      |++|||||+||++|++|--|.||.+..++.+..-.+|...|+.++|.+
T Consensus       337 CvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  337 CVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            999999999999999999999999999999999999999999999985

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.69  E-value=8e-14  Score=125.09  Aligned_cols=293  Identities=19%  Similarity=0.160  Sum_probs=172.2

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEe
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWD  178 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd  178 (456)
                      .+.++......-..+.|+|||+++++++.||.|.++|+.+.+.+.++... .....+++++||++++++. .++.+.++|
T Consensus        28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D  106 (369)
T PF02239_consen   28 VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVID  106 (369)
T ss_dssp             EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred             EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEec
Confidence            34555544444455789999999999999999999999999999888744 4568899999999998775 589999999


Q ss_pred             CCCCCCccccccC------cccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEE-EecCcCccEEEEEeCC
Q 012799          179 PQTGKPSGNPLSG------HKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGG  250 (456)
Q Consensus       179 ~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~  250 (456)
                      .++.+.+.....+      ....+.++..+|     ....++..-. .+.|.+.|....+.+. .............|+|
T Consensus       107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-----~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp  181 (369)
T PF02239_consen  107 AETLEPVKTIPTGGMPVDGPESRVAAIVASP-----GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP  181 (369)
T ss_dssp             TTT--EEEEEE--EE-TTTS---EEEEEE-S-----SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred             cccccceeecccccccccccCCCceeEEecC-----CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc
Confidence            9998876533221      234566776666     5565555544 4888888877654332 2222345667889999


Q ss_pred             CC-eEEE-EeCCCcEEEEECCCCeEEEEeec----CCcceEEEEecCcc-eeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799          251 DG-VIYT-GSQDCTIKVWETTQGKLIRELKG----HGHWVNSLALSTEY-ALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (456)
Q Consensus       251 ~~-~l~~-~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (456)
                      ++ ++++ ...++.|-++|..+++.+..+..    |..+...+ .+|.+ .+-...                        
T Consensus       182 dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~------------------------  236 (369)
T PF02239_consen  182 DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATS------------------------  236 (369)
T ss_dssp             TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEE------------------------
T ss_pred             ccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeec------------------------
Confidence            98 5544 45677899999999988776642    22233332 22221 100000                        


Q ss_pred             ccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE----ECCCcEEEEeCCCCeEEEEEe
Q 012799          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA----SFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       324 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~  399 (456)
                         ..+...++.-....+.+||... .+.+..+...... ..+..+|+++++.+.    ...+.|.++|.++.+.+..+.
T Consensus       237 ---~~~~~~~~~ig~~~v~v~d~~~-wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~  311 (369)
T PF02239_consen  237 ---GLGYFAIPLIGTDPVSVHDDYA-WKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT  311 (369)
T ss_dssp             ---BSSSSEEEEEE--TTT-STTTB-TSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH
T ss_pred             ---cccceecccccCCccccchhhc-CeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe
Confidence               0011122222233455666443 3344444444444 778889999999987    445899999999998877775


Q ss_pred             cccc-cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC--ceEE
Q 012799          400 GHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS--TLKV  455 (456)
Q Consensus       400 ~~~~-~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg--~v~i  455 (456)
                      ...+ .+..+                           .|++||+.+..+..++  .|.|
T Consensus       312 ~~~~~~~~h~---------------------------ef~~dG~~v~vS~~~~~~~i~v  343 (369)
T PF02239_consen  312 PGPGKRVVHM---------------------------EFNPDGKEVWVSVWDGNGAIVV  343 (369)
T ss_dssp             HHHT--EEEE---------------------------EE-TTSSEEEEEEE--TTEEEE
T ss_pred             ccCCCcEecc---------------------------EECCCCCEEEEEEecCCCEEEE
Confidence            3332 46666                           8899999766655443  4654

...

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=2.9e-14  Score=132.69  Aligned_cols=229  Identities=21%  Similarity=0.231  Sum_probs=151.6

Q ss_pred             CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCCccccccCcccceEEEEeccccc
Q 012799          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (456)
Q Consensus       130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  206 (456)
                      ..|.+||... .....+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++...  +....+....+.|+|   
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--l~~~~g~~~~~~~Sp---  257 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--VASFRGINGAPSFSP---  257 (433)
T ss_pred             EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--eccCCCCccCceECC---
Confidence            3689999864 4445566677889999999999999987743   469999998876532  333344455788998   


Q ss_pred             CCCCCEEEE-EeCCC--cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CCCc--EEEEECCCCeEEEEeec
Q 012799          207 NAPCRRFVS-ASKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDCT--IKVWETTQGKLIRELKG  279 (456)
Q Consensus       207 ~~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg~--i~iwd~~~~~~~~~~~~  279 (456)
                        +|+.++. .+.+|  .|++||+.+++.. .+..+.......+|+|+| .++.++ .+|.  |+++|+.+++... +..
T Consensus       258 --DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~  333 (433)
T PRK04922        258 --DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF  333 (433)
T ss_pred             --CCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec
Confidence              8887764 45555  5999999887643 454555556778999999 565554 3444  7777777665433 222


Q ss_pred             CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC---cEEEEecCCCCCCcccc
Q 012799          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF---TMFLWEPAVSKQPKTRM  356 (456)
Q Consensus       280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~  356 (456)
                      ........+|+|+                                    +++++..+.++   .|.+||+..+...  .+
T Consensus       334 ~g~~~~~~~~SpD------------------------------------G~~Ia~~~~~~~~~~I~v~d~~~g~~~--~L  375 (433)
T PRK04922        334 QGNYNARASVSPD------------------------------------GKKIAMVHGSGGQYRIAVMDLSTGSVR--TL  375 (433)
T ss_pred             CCCCccCEEECCC------------------------------------CCEEEEEECCCCceeEEEEECCCCCeE--EC
Confidence            3334446788887                                    45566554332   6899997655432  22


Q ss_pred             ccccccEeEEEECCCCCEEEEEECC---CcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          357 TGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       357 ~~~~~~v~~~~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      . +........|+|||++|+..+.+   +.+.++++. |.....+..+.+.+...
T Consensus       376 t-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p  428 (433)
T PRK04922        376 T-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREP  428 (433)
T ss_pred             C-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCC
Confidence            2 22234567999999998776653   357788874 44555555555556665

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=2.1e-14  Score=133.11  Aligned_cols=229  Identities=18%  Similarity=0.226  Sum_probs=147.0

Q ss_pred             CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCCccccccCcccceEEEEeccccc
Q 012799          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (456)
Q Consensus       130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  206 (456)
                      ..|.++|.+ +.....+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++...  +....+.+....|+|   
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--l~~~~g~~~~~~~SP---  249 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--VANFKGSNSAPAWSP---  249 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--eecCCCCccceEECC---
Confidence            367777774 44445556678889999999999999887643   359999999886542  333345567889999   


Q ss_pred             CCCCCEEEE-EeCCCcEEEEE--CCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CCCcEEEEE--CCCCeEEEEeec
Q 012799          207 NAPCRRFVS-ASKDGDARIWD--VSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDCTIKVWE--TTQGKLIRELKG  279 (456)
Q Consensus       207 ~~~~~~l~~-~~~dg~i~iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg~i~iwd--~~~~~~~~~~~~  279 (456)
                        +|+.++. .+.+|...+|.  +..+. ...+..+........|+|+| .++..+ .+|...+|.  +.+++.. .+..
T Consensus       250 --DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~  325 (427)
T PRK02889        250 --DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTF  325 (427)
T ss_pred             --CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEec
Confidence              8888874 56777766665  44443 44555555556778899999 555444 345656664  4444332 2222


Q ss_pred             CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC---cEEEEecCCCCCCcccc
Q 012799          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF---TMFLWEPAVSKQPKTRM  356 (456)
Q Consensus       280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~  356 (456)
                      .........|+|+                                    +++++..+.++   .|.+||+..+... . +
T Consensus       326 ~g~~~~~~~~SpD------------------------------------G~~Ia~~s~~~g~~~I~v~d~~~g~~~-~-l  367 (427)
T PRK02889        326 TGSYNTSPRISPD------------------------------------GKLLAYISRVGGAFKLYVQDLATGQVT-A-L  367 (427)
T ss_pred             CCCCcCceEECCC------------------------------------CCEEEEEEccCCcEEEEEEECCCCCeE-E-c
Confidence            2233345677776                                    55677666544   6999997665422 2 2


Q ss_pred             ccccccEeEEEECCCCCEEEEEECCC---cEEEEeCCCCeEEEEEecccccEEEE
Q 012799          357 TGHQQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       357 ~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      ... .......|+|||++|+.++.++   .+.+.+. +|+....+..+.+.+...
T Consensus       368 t~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p  420 (427)
T PRK02889        368 TDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREP  420 (427)
T ss_pred             cCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCC
Confidence            221 2346789999999988877554   3555565 466666666566666666

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=3.1e-14  Score=119.90  Aligned_cols=238  Identities=15%  Similarity=0.262  Sum_probs=172.5

Q ss_pred             CCCCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCCCccc-----cccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799          149 HKNWVLCIAWSADGK--HLVSGSKAGELQCWDPQTGKPSGN-----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~  221 (456)
                      ....|..++|.-+++  .+...+.|..+..+.+........     ......+.|..+...       ...|++|-.+|.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-------dg~Litc~~sG~  126 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-------DGTLITCVSSGN  126 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-------CCEEEEEecCCc
Confidence            445677777775443  444444566677766665544332     223334555555542       357888899999


Q ss_pred             EEEEECCCCe----EEEEecCcCccEEEEEeCCCC--eEEEEeCC--CcEEEEECCCCeEEEEeecCC---------cce
Q 012799          222 ARIWDVSLRK----CVICLSGHTLAVTCVKWGGDG--VIYTGSQD--CTIKVWETTQGKLIRELKGHG---------HWV  284 (456)
Q Consensus       222 i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~---------~~i  284 (456)
                      +.+|....+.    .+..+.. ...+..+.-++..  .+++|+..  ..+.+||+.+.+.+.+-+...         -++
T Consensus       127 l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~  205 (412)
T KOG3881|consen  127 LQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWI  205 (412)
T ss_pred             EEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeee
Confidence            9999987432    2222222 2344555555544  66668888  889999999886655443221         123


Q ss_pred             EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEe
Q 012799          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN  364 (456)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  364 (456)
                      +++.|-+.                                  .+...|++++.-+.+++||.+.+..++..+.-.+.+++
T Consensus       206 tdi~Fl~g----------------------------------~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is  251 (412)
T KOG3881|consen  206 TDIRFLEG----------------------------------SPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS  251 (412)
T ss_pred             ccceecCC----------------------------------CCCceEEEEecceeEEEecCcccCcceeEeccccCcce
Confidence            33333332                                  12566999999999999999998889988888899999


Q ss_pred             EEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE-EecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCe
Q 012799          365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL  443 (456)
Q Consensus       365 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  443 (456)
                      ++...|+|++|++|..-|.+..||++.++++.. +.+-.+.|.++                           ..+|.+++
T Consensus       252 ~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi---------------------------h~hp~~~~  304 (412)
T KOG3881|consen  252 STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI---------------------------HCHPTHPV  304 (412)
T ss_pred             eeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceE---------------------------EEcCCCce
Confidence            999999999999999999999999999999887 88999999999                           77999999


Q ss_pred             EEEeeCCCceEE
Q 012799          444 LLSGSKDSTLKV  455 (456)
Q Consensus       444 l~s~s~Dg~v~i  455 (456)
                      |+++|-|..|||
T Consensus       305 las~GLDRyvRI  316 (412)
T KOG3881|consen  305 LASCGLDRYVRI  316 (412)
T ss_pred             EEeeccceeEEE
Confidence            999999999998

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.66  E-value=6e-15  Score=117.65  Aligned_cols=247  Identities=17%  Similarity=0.187  Sum_probs=162.4

Q ss_pred             cccccc-CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC-----CCC----EEEEEe
Q 012799          100 CSATIA-GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA-----DGK----HLVSGS  169 (456)
Q Consensus       100 ~~~~l~-~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-----~~~----~l~s~~  169 (456)
                      ..-.++ .|...|+.+.--|++ .|.+-+.|+.+.+|++..+..+..   |.-.++++.|.+     +++    .++.-+
T Consensus        47 ~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~  122 (323)
T KOG0322|consen   47 DLPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPS  122 (323)
T ss_pred             cchhhhhhccceeeceeecCCc-chhhcCCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCC
Confidence            344555 578899999999984 578888999999999986543322   334444555543     111    111111


Q ss_pred             CCC-eEEEEeCCCCCCcc---ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEE----------EE
Q 012799          170 KAG-ELQCWDPQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV----------IC  235 (456)
Q Consensus       170 ~dg-~i~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------~~  235 (456)
                      +.. .+++-|.-....+.   ....+..+.+.+..+...  ....-.+++|-++|.+.+||+.++..+          ..
T Consensus       123 rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~--c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~  200 (323)
T KOG0322|consen  123 RGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA--CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP  200 (323)
T ss_pred             cccchhhhhccCccceeEccCchhccccCceeeeecccc--ccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence            100 01111111110000   011123345555554321  112235667888999999999987433          33


Q ss_pred             ecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCC--e--EEEEeecCCcceEEEEecCcceeeeccccCCCCccCCh
Q 012799          236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG--K--LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (456)
Q Consensus       236 ~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (456)
                      ...|..+|.++.+.+.- .=++|+.+..+..|++...  .  ....+...+..+..+.+-|+                  
T Consensus       201 ~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD------------------  262 (323)
T KOG0322|consen  201 NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD------------------  262 (323)
T ss_pred             hhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccC------------------
Confidence            45688999999998744 5667788888888887643  2  22233334456777888887                  


Q ss_pred             HHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (456)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  389 (456)
                                        ++.+++++.|+.|++|..++. .+...++.|...|++++|+|+..++|+++.|++|.+|++
T Consensus       263 ------------------~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  263 ------------------GKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ------------------CcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                              556999999999999997765 466778899999999999999999999999999999986

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.65  E-value=2.1e-13  Score=112.45  Aligned_cols=306  Identities=16%  Similarity=0.247  Sum_probs=188.4

Q ss_pred             cccEEEEEECCCCCeEEEE-ECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCc
Q 012799          108 TEAVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPS  185 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~  185 (456)
                      -+.|.-+.|..|..+++++ ..|+.|.+|++...+-...+.....++.+++|+|||+.| .+...|-.|.+|.+.+.+..
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY  127 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence            4678889999998877665 578899999998877777888888999999999999655 46667889999999887754


Q ss_pred             cccccCcccceEEEEecccccCCCCCEEEEEeC------------------------------------CCcEEEEECCC
Q 012799          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASK------------------------------------DGDARIWDVSL  229 (456)
Q Consensus       186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~------------------------------------dg~i~iwd~~~  229 (456)
                      .  +.-.+..+..++|+|     +|++.+.++.                                    +..+.+||.--
T Consensus       128 ~--~~~pK~~~kg~~f~~-----dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L  200 (447)
T KOG4497|consen  128 L--LPHPKTNVKGYAFHP-----DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL  200 (447)
T ss_pred             E--ecccccCceeEEECC-----CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh
Confidence            3  333344567888888     7777665542                                    22345555322


Q ss_pred             CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeec----CC---------------cceEEEEe
Q 012799          230 RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG----HG---------------HWVNSLAL  289 (456)
Q Consensus       230 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~---------------~~i~~~~~  289 (456)
                      .-.+..+. -.-.+..++|+|.+ .+++|+.|+.+|+.+--+-+...++-.    |.               -...++.|
T Consensus       201 eykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf  279 (447)
T KOG4497|consen  201 EYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSF  279 (447)
T ss_pred             hheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccccc
Confidence            22222221 23568889999977 899999999999877655544433310    00               01123333


Q ss_pred             cCcceeeeccccCCCCccCChHHHHHHH-----Hhh-------hhhccCCCCCEEEEEeC--CCcEEEEecCCCCCCccc
Q 012799          290 STEYALRTGAFDHTGKQYSSPEEMKKAA-----LER-------YNKIKGNAPERLVSGSD--DFTMFLWEPAVSKQPKTR  355 (456)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~  355 (456)
                      .|.. +....+......+..........     .+.       ....+..+..++++-.+  -+.+-+||++..+.....
T Consensus       280 ~p~~-~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL  358 (447)
T KOG4497|consen  280 TPTD-LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL  358 (447)
T ss_pred             CCCc-cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence            3321 10111110000000000000000     000       00113344445554433  246889998765432222


Q ss_pred             cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccce
Q 012799          356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLY  435 (456)
Q Consensus       356 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (456)
                        -...+|....|+|....|+.+.....+++|...-...+.. .+..-.|.++                           
T Consensus       359 --iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l---------------------------  408 (447)
T KOG4497|consen  359 --IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKL---------------------------  408 (447)
T ss_pred             --hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeE---------------------------
Confidence              2345699999999988888888788899998765444443 2233567777                           


Q ss_pred             eEecCCCeEEEeeCCCc
Q 012799          436 SWSADSRLLLSGSKDST  452 (456)
Q Consensus       436 ~~s~dg~~l~s~s~Dg~  452 (456)
                      +|..+|..++..++|..
T Consensus       409 ~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  409 QWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             EecCCCcEEEEEcCCce
Confidence            89999999999988854

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=6.2e-13  Score=117.39  Aligned_cols=275  Identities=19%  Similarity=0.230  Sum_probs=174.8

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-----eCC-----CeEEEE
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-----SKA-----GELQCW  177 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-----~~d-----g~i~vw  177 (456)
                      ..+.+..+++++|+++|.+. +..++|++..++..+.+....  .++++.|+|-|++|.+=     ..+     -.+.+|
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~  110 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY  110 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence            44578889999999888875 558999999888644444322  78999999999998762     122     247799


Q ss_pred             eCCCCCCcccccc---------------------------------------CcccceEEEEecccccCCCCCEEEE---
Q 012799          178 DPQTGKPSGNPLS---------------------------------------GHKKWITGISWEPVHLNAPCRRFVS---  215 (456)
Q Consensus       178 d~~~~~~~~~~~~---------------------------------------~~~~~v~~~~~~~~~~~~~~~~l~~---  215 (456)
                      +.+++.....+..                                       -|...|..+.++|..   ....+++   
T Consensus       111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp---~~~~vAvyvP  187 (566)
T KOG2315|consen  111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGP---EPPFVAVYVP  187 (566)
T ss_pred             eeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCC---CCceEEEEcc
Confidence            9887542211111                                       122334444444411   1122322   


Q ss_pred             --EeCCCcEEEEECCCCeE---EEEecCcCccEEEEEeCCCC--eEEEEeC--C---------CcEEEEECCCCeEEEEe
Q 012799          216 --ASKDGDARIWDVSLRKC---VICLSGHTLAVTCVKWGGDG--VIYTGSQ--D---------CTIKVWETTQGKLIREL  277 (456)
Q Consensus       216 --~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~--~l~~~~~--d---------g~i~iwd~~~~~~~~~~  277 (456)
                        .|.-+.|+||.......   +..-.-....-..+.|++.|  .|+.++.  |         .++++.++........+
T Consensus       188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L  267 (566)
T KOG2315|consen  188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL  267 (566)
T ss_pred             CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence              23445677776542111   11111122333457788766  4433332  3         35778887733333333


Q ss_pred             ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc
Q 012799          278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT  357 (456)
Q Consensus       278 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  357 (456)
                      . ..++|.++.|++.+.-.                                  -++.|-.-..+.|||++..  ++.  .
T Consensus       268 ~-k~GPVhdv~W~~s~~EF----------------------------------~VvyGfMPAkvtifnlr~~--~v~--d  308 (566)
T KOG2315|consen  268 L-KEGPVHDVTWSPSGREF----------------------------------AVVYGFMPAKVTIFNLRGK--PVF--D  308 (566)
T ss_pred             C-CCCCceEEEECCCCCEE----------------------------------EEEEecccceEEEEcCCCC--EeE--e
Confidence            3 57899999999985321                                  2667778889999996532  222  2


Q ss_pred             cccccEeEEEECCCCCEEEEEECC---CcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccc
Q 012799          358 GHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSL  434 (456)
Q Consensus       358 ~~~~~v~~~~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (456)
                      -.+++-+++-|+|.|++|+.+|-+   |.+-|||+.+.+++..+......+    |                        
T Consensus       309 f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~----~------------------------  360 (566)
T KOG2315|consen  309 FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV----F------------------------  360 (566)
T ss_pred             CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceE----E------------------------
Confidence            335667889999999998887754   799999999988888777443322    2                        


Q ss_pred             eeEecCCCeEEEeeC------CCceEEC
Q 012799          435 YSWSADSRLLLSGSK------DSTLKVT  456 (456)
Q Consensus       435 ~~~s~dg~~l~s~s~------Dg~v~iW  456 (456)
                       .|+|||++++|+..      |+.++||
T Consensus       361 -eW~PdGe~flTATTaPRlrvdNg~Kiw  387 (566)
T KOG2315|consen  361 -EWSPDGEYFLTATTAPRLRVDNGIKIW  387 (566)
T ss_pred             -EEcCCCcEEEEEeccccEEecCCeEEE
Confidence             89999999999876      5667777

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.4e-13  Score=127.47  Aligned_cols=224  Identities=17%  Similarity=0.190  Sum_probs=149.6

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEE---CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCCC-
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGS---GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAG-  172 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~---~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg-  172 (456)
                      +...+.+..+...+.+.+|+|||+.||..+   .+..+++|++.+++... +....+.+..++|+|||+.|+.. +.+| 
T Consensus       188 g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~  266 (429)
T PRK03629        188 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGS  266 (429)
T ss_pred             CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCC
Confidence            334456667788999999999999998764   24579999998775432 22334445678999999988865 4454 


Q ss_pred             -eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC-C--cEEEEECCCCeEEEEecCcCccEEEEEe
Q 012799          173 -ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-G--DARIWDVSLRKCVICLSGHTLAVTCVKW  248 (456)
Q Consensus       173 -~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~  248 (456)
                       .|.+||+++++...  +..+...+....|+|     +|+.++..+.+ +  .|+++|+.+++.. .+...........|
T Consensus       267 ~~I~~~d~~tg~~~~--lt~~~~~~~~~~wSP-----DG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~  338 (429)
T PRK03629        267 LNLYVMDLASGQIRQ--VTDGRSNNTEPTWFP-----DSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADV  338 (429)
T ss_pred             cEEEEEECCCCCEEE--ccCCCCCcCceEECC-----CCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEE
Confidence             58899998876543  333445677889999     99988877764 4  4555577665433 33333445567889


Q ss_pred             CCCC-eEEEEeCC---CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799          249 GGDG-VIYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (456)
Q Consensus       249 ~~~~-~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (456)
                      +|+| .++..+.+   ..|.+||+.+++.. .+... .......|+|+                                
T Consensus       339 SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpD--------------------------------  384 (429)
T PRK03629        339 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPN--------------------------------  384 (429)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCC--------------------------------
Confidence            9999 55554433   35888999887643 33221 12345667776                                


Q ss_pred             cCCCCCEEEEEeCCCc---EEEEecCCCCCCccccccccccEeEEEECC
Q 012799          325 KGNAPERLVSGSDDFT---MFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (456)
Q Consensus       325 ~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp  370 (456)
                          +..++.++.++.   +.++++. + .....+.+|.+.+...+|+|
T Consensus       385 ----G~~i~~~s~~~~~~~l~~~~~~-G-~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        385 ----GTMVIYSSSQGMGSVLNLVSTD-G-RFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ----CCEEEEEEcCCCceEEEEEECC-C-CCeEECccCCCCcCCcccCC
Confidence                666887777664   6666753 2 23344566788888899987

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=5.4e-14  Score=117.30  Aligned_cols=196  Identities=20%  Similarity=0.313  Sum_probs=141.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC
Q 012799          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL  229 (456)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  229 (456)
                      +..+..++|++.-..++++..|-.|++|+-.. .............|++++|.|.    .+..|++|.. +-|.+|....
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPl----saselavgCr-~gIciW~~s~  171 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPL----SASELAVGCR-AGICIWSDSR  171 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccC----Ccceeeeeec-ceeEEEEcCc
Confidence            44577899999777888999999999999877 3333244455678999999995    3456777776 4599997642


Q ss_pred             C----eE----------EEEecCcCccEEEEEeCCCC-eEEEEeC-CCcEEEEECCCCeEEEEeecCCcceEEEEecCcc
Q 012799          230 R----KC----------VICLSGHTLAVTCVKWGGDG-VIYTGSQ-DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY  293 (456)
Q Consensus       230 ~----~~----------~~~~~~~~~~v~~~~~~~~~-~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~  293 (456)
                      .    ..          +..-.+| .+|++++|.+|| .+++++. |..|.+||..++..+.......+.+.-+.|+|+ 
T Consensus       172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd-  249 (445)
T KOG2139|consen  172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD-  249 (445)
T ss_pred             ccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC-
Confidence            1    11          1122334 689999999999 7777665 678999999998877766556677889999998 


Q ss_pred             eeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCC
Q 012799          294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ  373 (456)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~  373 (456)
                                                         ++++++++-|+..++|.......... ..-..+.|...+|+|+|+
T Consensus       250 -----------------------------------gd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGs  293 (445)
T KOG2139|consen  250 -----------------------------------GDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGS  293 (445)
T ss_pred             -----------------------------------CCEEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCC
Confidence                                               66799999999999996443332222 222344899999999999


Q ss_pred             EEEEEECCCcEEEEeCC
Q 012799          374 WVASASFDKSIKLWNGT  390 (456)
Q Consensus       374 ~l~s~~~dg~i~iwd~~  390 (456)
                      +|.... .|.-++|.+.
T Consensus       294 fLLf~~-sgsp~lysl~  309 (445)
T KOG2139|consen  294 FLLFAC-SGSPRLYSLT  309 (445)
T ss_pred             EEEEEE-cCCceEEEEe
Confidence            865544 2334555543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=3.1e-13  Score=125.98  Aligned_cols=216  Identities=16%  Similarity=0.132  Sum_probs=146.7

Q ss_pred             CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCCccccccCcccceEEEEeccccc
Q 012799          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (456)
Q Consensus       130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  206 (456)
                      ..|.++|.+. .....+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++..  .+..+.+.+....|+|   
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--~l~~~~g~~~~~~~SP---  255 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--LVGNFPGMTFAPRFSP---  255 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--EeecCCCcccCcEECC---
Confidence            3788999854 445566778889999999999999988764   467999999888653  3445566677889999   


Q ss_pred             CCCCCEEE-EEeCCCc--EEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CCC--cEEEEECCCCeEEEEeec
Q 012799          207 NAPCRRFV-SASKDGD--ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDC--TIKVWETTQGKLIRELKG  279 (456)
Q Consensus       207 ~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg--~i~iwd~~~~~~~~~~~~  279 (456)
                        +|+.++ +.+.++.  |++||+.+++. ..+..+........|+|+| .++..+ .+|  .|+++|+..++.. .+..
T Consensus       256 --DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~  331 (435)
T PRK05137        256 --DGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF  331 (435)
T ss_pred             --CCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec
Confidence              888776 4455554  77889887765 4455566667789999999 555554 333  6888898766543 3333


Q ss_pred             CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC---CcEEEEecCCCCCCcccc
Q 012799          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD---FTMFLWEPAVSKQPKTRM  356 (456)
Q Consensus       280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~  356 (456)
                      ....+....|+|+                                    ++.++....+   ..|.+||+.....  ..+
T Consensus       332 ~~~~~~~~~~Spd------------------------------------G~~ia~~~~~~~~~~i~~~d~~~~~~--~~l  373 (435)
T PRK05137        332 GGGRYSTPVWSPR------------------------------------GDLIAFTKQGGGQFSIGVMKPDGSGE--RIL  373 (435)
T ss_pred             CCCcccCeEECCC------------------------------------CCEEEEEEcCCCceEEEEEECCCCce--Eec
Confidence            3444566778887                                    4556655433   3678888644332  222


Q ss_pred             ccccccEeEEEECCCCCEEEEEECC------CcEEEEeCCCCeE
Q 012799          357 TGHQQLVNHVYFSPDGQWVASASFD------KSIKLWNGTTGKF  394 (456)
Q Consensus       357 ~~~~~~v~~~~~sp~~~~l~s~~~d------g~i~iwd~~~~~~  394 (456)
                      . ....+....|+|||++|+..+.+      ..+.++|+..+..
T Consensus       374 t-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        374 T-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             c-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            2 12246778999999998775543      2577778765543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.63  E-value=1.2e-14  Score=127.12  Aligned_cols=169  Identities=24%  Similarity=0.370  Sum_probs=131.1

Q ss_pred             CCCCeEEEEECCCcEEEEeCCCCcceeEEe----cCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCC----cc--
Q 012799          118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKP----SG--  186 (456)
Q Consensus       118 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~----~~--  186 (456)
                      |.+--|..|-.-|.|.+.|....+..+.+.    -....|+|+.|-|. ...++.+-.+|.+.+||.+....    ..  
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            455567777778888888876532221111    13478999999994 45666777899999997642110    00  


Q ss_pred             ---------------------ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEE
Q 012799          187 ---------------------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTC  245 (456)
Q Consensus       187 ---------------------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  245 (456)
                                           ....--.+.|...+|+|     ||++||+.+.||.++|||..+.+.+..++..-+...|
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-----DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLC  337 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-----DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLC  337 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-----CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEE
Confidence                                 00111233567777777     9999999999999999999998888877777889999


Q ss_pred             EEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecC
Q 012799          246 VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST  291 (456)
Q Consensus       246 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  291 (456)
                      ++|+||| ++++|+.|-.|.+|.+..++.+..=++|.++|..++|.|
T Consensus       338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            9999999 999999999999999999999999999999999999997

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.3e-13  Score=127.94  Aligned_cols=185  Identities=22%  Similarity=0.211  Sum_probs=122.8

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECC---CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE-EEeCCCe
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGE  173 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~  173 (456)
                      +...+.+..+...+.+.+|+|||+.|+..+.+   ..|++||+.+++.. .+....+.+.+.+|+|||+.|+ +.+.+|.
T Consensus       185 G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~  263 (427)
T PRK02889        185 GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGN  263 (427)
T ss_pred             CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCC
Confidence            44455667788899999999999999887643   35999999887654 3344455677899999999887 4677777


Q ss_pred             EEEEe--CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEEC--CCCeEEEEecCcCccEEEEEe
Q 012799          174 LQCWD--PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDV--SLRKCVICLSGHTLAVTCVKW  248 (456)
Q Consensus       174 i~vwd--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~  248 (456)
                      ..+|.  ...+...  .+..+........|+|     +|+.++..+. +|...+|.+  .+++... +...........|
T Consensus       264 ~~Iy~~d~~~~~~~--~lt~~~~~~~~~~wSp-----DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~  335 (427)
T PRK02889        264 SQIYTVNADGSGLR--RLTQSSGIDTEPFFSP-----DGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRI  335 (427)
T ss_pred             ceEEEEECCCCCcE--ECCCCCCCCcCeEEcC-----CCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEE
Confidence            66665  4444422  3444555566788998     9998887654 455566654  4444322 2222233446789


Q ss_pred             CCCC-eEEEEeCCC---cEEEEECCCCeEEEEeecCCcceEEEEecCcc
Q 012799          249 GGDG-VIYTGSQDC---TIKVWETTQGKLIRELKGHGHWVNSLALSTEY  293 (456)
Q Consensus       249 ~~~~-~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~  293 (456)
                      +|+| .++..+.++   .|.+||+.+++... +.. ........|+|++
T Consensus       336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg  382 (427)
T PRK02889        336 SPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNG  382 (427)
T ss_pred             CCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCC
Confidence            9999 666555543   69999998876543 322 2234567788873

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.62  E-value=1.5e-13  Score=113.87  Aligned_cols=302  Identities=16%  Similarity=0.244  Sum_probs=190.8

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-----ceeEEecCC------------CCEEEEEEcCCC--CEEEE
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHK------------NWVLCIAWSADG--KHLVS  167 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~s  167 (456)
                      ..+-|.++.|...|.+||+|..+|.|.++.-+...     ....++.|.            ..|..+.|.+++  ..++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            35678999999999999999999999999754322     122333342            458889999855  46777


Q ss_pred             EeCCCeEEEEeCCCCCCcc-----------------------------------ccccCcccceEEEEecccccCCCCCE
Q 012799          168 GSKAGELQCWDPQTGKPSG-----------------------------------NPLSGHKKWITGISWEPVHLNAPCRR  212 (456)
Q Consensus       168 ~~~dg~i~vwd~~~~~~~~-----------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~  212 (456)
                      .+.|.+|++|.+.......                                   ..-..|.-.|.++.+..     |+..
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-----D~Et  178 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-----DKET  178 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-----ccce
Confidence            8899999999886432111                                   01124555666666655     7777


Q ss_pred             EEEEeCCCcEEEEECCCCe---EEEEecCcC-----ccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEE----Eee
Q 012799          213 FVSASKDGDARIWDVSLRK---CVICLSGHT-----LAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIR----ELK  278 (456)
Q Consensus       213 l~~~~~dg~i~iwd~~~~~---~~~~~~~~~-----~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~----~~~  278 (456)
                      ++++. |=.|.+|+++--.   .+..++.+.     .-|++..|+|..  .++-.+..|+|++.|++...+..    .+.
T Consensus       179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE  257 (433)
T KOG1354|consen  179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE  257 (433)
T ss_pred             Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence            77664 5789999986432   233333332     458889999966  78888999999999998643221    111


Q ss_pred             cC------------CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEec
Q 012799          279 GH------------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (456)
Q Consensus       279 ~~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  346 (456)
                      ..            -..|..+.|++.                                    |+++++- +=-+|++||+
T Consensus       258 epedp~~rsffseiIsSISDvKFs~s------------------------------------GryilsR-Dyltvk~wD~  300 (433)
T KOG1354|consen  258 EPEDPSSRSFFSEIISSISDVKFSHS------------------------------------GRYILSR-DYLTVKLWDL  300 (433)
T ss_pred             cccCCcchhhHHHHhhhhhceEEccC------------------------------------CcEEEEe-ccceeEEEec
Confidence            11            123445555554                                    4555543 3368999998


Q ss_pred             CCCCCCccccccccc------------c---EeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE-EEEecccc-----cE
Q 012799          347 AVSKQPKTRMTGHQQ------------L---VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV-AVFRGHVG-----PV  405 (456)
Q Consensus       347 ~~~~~~~~~~~~~~~------------~---v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~-----~v  405 (456)
                      .....++....-|..            .   -..++|+.++.+++||+..+.+++++...|... .++.....     .+
T Consensus       301 nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~  380 (433)
T KOG1354|consen  301 NMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV  380 (433)
T ss_pred             cccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc
Confidence            777766665555532            1   245789999999999999999999997665432 22221111     11


Q ss_pred             EEEEeeeeeeec-CCCCceeeecccccccceeEecCCCeEEEeeCCC
Q 012799          406 YQIRFELIYCFR-YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS  451 (456)
Q Consensus       406 ~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg  451 (456)
                      ..+..-....-. ..+......+....+...+|+|..+.+|.+..++
T Consensus       381 ~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn  427 (433)
T KOG1354|consen  381 LKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN  427 (433)
T ss_pred             ccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCc
Confidence            111110000000 0111333445555667779999999998877653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=2.4e-13  Score=126.57  Aligned_cols=224  Identities=21%  Similarity=0.194  Sum_probs=148.3

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECC---CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE-EEeCCC-
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAG-  172 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg-  172 (456)
                      +...+.+..|...+.+.+|+|||+.|+..+.+   ..|++||+.+++.. .+....+...+++|+|||+.|+ +.+.+| 
T Consensus       193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~  271 (433)
T PRK04922        193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGN  271 (433)
T ss_pred             CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCC
Confidence            44556677888899999999999999988743   46999999877643 3334455566889999999776 445555 


Q ss_pred             -eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CCc--EEEEECCCCeEEEEecCcCccEEEEEe
Q 012799          173 -ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGD--ARIWDVSLRKCVICLSGHTLAVTCVKW  248 (456)
Q Consensus       173 -~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~  248 (456)
                       .|.+||+.+++..  .+..+.......+|+|     +|+.++..+. +|.  |+++|+.+++... +..+.......+|
T Consensus       272 ~~Iy~~d~~~g~~~--~lt~~~~~~~~~~~sp-----DG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~  343 (433)
T PRK04922        272 PEIYVMDLGSRQLT--RLTNHFGIDTEPTWAP-----DGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASV  343 (433)
T ss_pred             ceEEEEECCCCCeE--ECccCCCCccceEECC-----CCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEE
Confidence             5999999887653  2444545556788988     8998887764 444  7777776665433 2223334557899


Q ss_pred             CCCC-eEEEEeCCC---cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799          249 GGDG-VIYTGSQDC---TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (456)
Q Consensus       249 ~~~~-~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (456)
                      +|+| .++..+.++   .|.+||+.+++.. .+. +........|+|+                                
T Consensus       344 SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spd--------------------------------  389 (433)
T PRK04922        344 SPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPN--------------------------------  389 (433)
T ss_pred             CCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCC--------------------------------
Confidence            9999 665544332   5999999887654 333 2223445677777                                


Q ss_pred             cCCCCCEEEEEeC---CCcEEEEecCCCCCCccccccccccEeEEEECC
Q 012799          325 KGNAPERLVSGSD---DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (456)
Q Consensus       325 ~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp  370 (456)
                          ++.++..+.   .+.|+++++..  .....+..+.+.+...+|+|
T Consensus       390 ----G~~i~~~s~~~g~~~L~~~~~~g--~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        390 ----GSMVLYATREGGRGVLAAVSTDG--RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ----CCEEEEEEecCCceEEEEEECCC--CceEEcccCCCCCCCCccCC
Confidence                444555544   23577777533  23333444556677778876

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=8.1e-13  Score=123.22  Aligned_cols=185  Identities=21%  Similarity=0.211  Sum_probs=130.0

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEEC---CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE-EEeCCCe
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGE  173 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~---d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~  173 (456)
                      +...+.+..|...+.+.+|+|||+.|+..+.   +..|++||+.+++. ..+..+.+.+...+|+|||+.|+ +.+.++.
T Consensus       191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~  269 (435)
T PRK05137        191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGN  269 (435)
T ss_pred             CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence            4455677889999999999999999988763   46899999988764 34555677788999999999876 4555554


Q ss_pred             --EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CC--cEEEEECCCCeEEEEecCcCccEEEEEe
Q 012799          174 --LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DG--DARIWDVSLRKCVICLSGHTLAVTCVKW  248 (456)
Q Consensus       174 --i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~  248 (456)
                        |.+||+.++...  .+..+........|+|     +|+.++..+. +|  .|+++|+..++... +..+...+....|
T Consensus       270 ~~Iy~~d~~~~~~~--~Lt~~~~~~~~~~~sp-----DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~  341 (435)
T PRK05137        270 TDIYTMDLRSGTTT--RLTDSPAIDTSPSYSP-----DGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVW  341 (435)
T ss_pred             ceEEEEECCCCceE--EccCCCCccCceeEcC-----CCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEE
Confidence              777788877653  3445555667789998     8998887764 33  68888987665433 3333455677889


Q ss_pred             CCCC-eEEEEeCC---CcEEEEECCCCeEEEEeecCCcceEEEEecCcc
Q 012799          249 GGDG-VIYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEY  293 (456)
Q Consensus       249 ~~~~-~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~  293 (456)
                      +|+| .++....+   ..|.+||+..+.. ..+.. ...+..+.|+|++
T Consensus       342 SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG  388 (435)
T PRK05137        342 SPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNG  388 (435)
T ss_pred             CCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCC
Confidence            9999 66555433   3688889865443 33332 2345667788873

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.59  E-value=2.1e-13  Score=112.48  Aligned_cols=227  Identities=19%  Similarity=0.217  Sum_probs=147.7

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEE-EEEeCCCcEEEEECCCCeEE
Q 012799          155 CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCV  233 (456)
Q Consensus       155 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~  233 (456)
                      -.+|+|+|+++|+++.- .+.|-|.++-+...  +..--..|.-+.|..     +..++ .....++.|.+|++...+-.
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q--lf~cldki~yieW~a-----ds~~ilC~~yk~~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ--LFLCLDKIVYIEWKA-----DSCHILCVAYKDPKVQVWSLVQPEWY   84 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHH--HHHHHHHhhheeeec-----cceeeeeeeeccceEEEEEeecceeE
Confidence            35799999999999866 78888887766543  112234566777765     44444 45577889999999999988


Q ss_pred             EEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChH
Q 012799          234 ICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (456)
Q Consensus       234 ~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (456)
                      ..+.....++..+.|+|+|  .|.+..-+-.|.+|.+.+.+.. -++.....+..++|++++.+........-+.+....
T Consensus        85 ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~  163 (447)
T KOG4497|consen   85 CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS  163 (447)
T ss_pred             EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence            8888889999999999999  6677778999999999886543 344455567889999998876655444333332222


Q ss_pred             HHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccccc-ccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ-QLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                      ..+.-..-..-.....+-.-+--+-++..+.+||.--....   +.-|. -.+..++|+|.+++|+.|+.|+.+|+.+--
T Consensus       164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv---~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV---YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             hhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee---eeeeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence            11111111000000000001122233445678883222111   12222 458899999999999999999999998744


Q ss_pred             CCe
Q 012799          391 TGK  393 (456)
Q Consensus       391 ~~~  393 (456)
                      +-+
T Consensus       241 tWk  243 (447)
T KOG4497|consen  241 TWK  243 (447)
T ss_pred             eee
Confidence            433

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.59  E-value=1e-12  Score=106.72  Aligned_cols=259  Identities=16%  Similarity=0.207  Sum_probs=176.8

Q ss_pred             CCcEEEEeCCCCccee--EEe-cCCCCEEEEEEcC---CCC-EEEEEeCCCeEEEEeCCCCCCccc--cccCccc---ce
Q 012799          129 DTTVRLWDLNTQTPMF--KCT-GHKNWVLCIAWSA---DGK-HLVSGSKAGELQCWDPQTGKPSGN--PLSGHKK---WI  196 (456)
Q Consensus       129 d~~v~vwd~~~~~~~~--~~~-~~~~~v~~~~~~~---~~~-~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~---~v  196 (456)
                      .|.+.+|++...+...  +++ .....+..+.|..   +|. .++-+..+|.|.++..........  .+..-.-   ..
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~  124 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA  124 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence            4678888887654332  111 2345567777763   455 556667789999997654332210  1111111   23


Q ss_pred             EEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE--EecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCC-C
Q 012799          197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQ-G  271 (456)
Q Consensus       197 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~-~  271 (456)
                      .++.|++     .+..++++..+|.+.+-+........  ..+.|.-+..-..|+...  .+++|+.|+.+..||+|. +
T Consensus       125 lslD~~~-----~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~  199 (339)
T KOG0280|consen  125 LSLDIST-----SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK  199 (339)
T ss_pred             eEEEeec-----cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence            4667777     67789999999999977665554443  778899999999988654  899999999999999993 3


Q ss_pred             eEEEE-eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC
Q 012799          272 KLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK  350 (456)
Q Consensus       272 ~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  350 (456)
                      +.+.. .+.|...|.++.-+|.                                   .+.++++|+.|-.|++||.++-.
T Consensus       200 ~~i~~n~kvH~~GV~SI~ss~~-----------------------------------~~~~I~TGsYDe~i~~~DtRnm~  244 (339)
T KOG0280|consen  200 TFIWHNSKVHTSGVVSIYSSPP-----------------------------------KPTYIATGSYDECIRVLDTRNMG  244 (339)
T ss_pred             ceeeecceeeecceEEEecCCC-----------------------------------CCceEEEeccccceeeeehhccc
Confidence            44433 4568888999988775                                   36679999999999999998777


Q ss_pred             CCccccccccccEeEEEECCC--CCEEEEEECCCcEEEEeCCCCe-----EEEEEecccccEEEEEeeeeeeecCCCCce
Q 012799          351 QPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTGK-----FVAVFRGHVGPVYQIRFELIYCFRYPSNFY  423 (456)
Q Consensus       351 ~~~~~~~~~~~~v~~~~~sp~--~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~  423 (456)
                      +++.... -.+.|..+.++|.  +++|+++...| .+|-+...+.     .+...+.|.+-+..-               
T Consensus       245 kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~---------------  307 (339)
T KOG0280|consen  245 KPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGG---------------  307 (339)
T ss_pred             CccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecc---------------
Confidence            7666443 3478999999994  44566666666 6777776542     234455666666555               


Q ss_pred             eeecccccccceeEecCCCeEEEee-CCCceE-EC
Q 012799          424 CVVDMSCCMSLYSWSADSRLLLSGS-KDSTLK-VT  456 (456)
Q Consensus       424 ~~~~~~~~~~~~~~s~dg~~l~s~s-~Dg~v~-iW  456 (456)
                                  .|......|+|++ .|..++ +|
T Consensus       308 ------------DWd~~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  308 ------------DWDSKDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             ------------ccccccceeeeeeccccceeeee
Confidence                        5644456788875 577755 66

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.58  E-value=7.3e-13  Score=107.97  Aligned_cols=154  Identities=26%  Similarity=0.402  Sum_probs=109.6

Q ss_pred             EEEEECCCCCeEEEEEC----------CCcEEEEeCCC-CcceeEEe-cCCCCEEEEEEcCCCCEEEEE--eCCCeEEEE
Q 012799          112 LSVAFSPDGRQLASGSG----------DTTVRLWDLNT-QTPMFKCT-GHKNWVLCIAWSADGKHLVSG--SKAGELQCW  177 (456)
Q Consensus       112 ~~~~~s~~~~~l~~~~~----------d~~v~vwd~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~--~~dg~i~vw  177 (456)
                      ..+.|+|+|++|+.-..          -+...+|.++. +.+...+. ...++|.+++|+|+|+.+|+.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45789999987765432          12355555532 23344443 245579999999999987654  456799999


Q ss_pred             eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC---CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-e
Q 012799          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD---GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-V  253 (456)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~  253 (456)
                      |++ ++.+.   .-+...+..+.|+|     +|+++++++.+   |.|.+||.++.+.+.....  ..++.++|+|+| +
T Consensus        89 d~~-~~~i~---~~~~~~~n~i~wsP-----~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~  157 (194)
T PF08662_consen   89 DVK-GKKIF---SFGTQPRNTISWSP-----DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRY  157 (194)
T ss_pred             cCc-ccEeE---eecCCCceEEEECC-----CCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCE
Confidence            997 43332   22356678899999     99999998754   6799999998888877642  347899999999 7


Q ss_pred             EEEEeC------CCcEEEEECCCCeEEEEe
Q 012799          254 IYTGSQ------DCTIKVWETTQGKLIREL  277 (456)
Q Consensus       254 l~~~~~------dg~i~iwd~~~~~~~~~~  277 (456)
                      ++++..      |+.++||+.. |+.+...
T Consensus       158 ~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  158 LATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             EEEEEeccceeccccEEEEEec-CeEeEec
Confidence            776654      7889999985 5655543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.58  E-value=2.9e-13  Score=127.77  Aligned_cols=267  Identities=19%  Similarity=0.235  Sum_probs=184.4

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe------cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  181 (456)
                      -+++++.++-.  ++|.+|. --.|.+||+.++..+..+.      .|...-.-.   -.+.+++++..-+.+..=+...
T Consensus         7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~~   80 (967)
T KOG0974|consen    7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEASN   80 (967)
T ss_pred             cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchhh
Confidence            34445555443  5666664 3469999999876554432      331000000   0233455554433333322211


Q ss_pred             CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc----EEEEEeCCCC-eEEE
Q 012799          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA----VTCVKWGGDG-VIYT  256 (456)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----v~~~~~~~~~-~l~~  256 (456)
                      .     ........+....+..     ....++.+..+..+.+||...+.....+......    ..-+..+++. ++++
T Consensus        81 ~-----~~~~~s~wi~g~~l~~-----e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~  150 (967)
T KOG0974|consen   81 Q-----IIERFSDWIFGAKLFE-----ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIAS  150 (967)
T ss_pred             h-----hhhhccccccccchhh-----hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEe
Confidence            1     1222233333332222     5578888999999999999877666555432211    1112234455 8899


Q ss_pred             EeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe
Q 012799          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (456)
Q Consensus       257 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (456)
                      |+.-+.|.+|+....+.-..+.+|.+.+.++.++.+                                    +.++++.+
T Consensus       151 gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~d------------------------------------g~~i~s~S  194 (967)
T KOG0974|consen  151 GSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLD------------------------------------GRYIASVS  194 (967)
T ss_pred             ccccccEEEEeccccCCcceecccCCceEEEEEccC------------------------------------CcEEEEEe
Confidence            999999999998754444468889999999999887                                    67799999


Q ss_pred             CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc-cEEEEEeeeeee
Q 012799          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-PVYQIRFELIYC  415 (456)
Q Consensus       337 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~  415 (456)
                      +|.++++|++.+.........+|...|..++|.|+  .+++++.|-+.++|+. .++.+.++.+|.+ .++.+       
T Consensus       195 dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~-------  264 (967)
T KOG0974|consen  195 DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKI-------  264 (967)
T ss_pred             cCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEE-------
Confidence            99999999999888777677899999999999998  8999999999999975 5666668888865 67787       


Q ss_pred             ecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                          +..++...++|++.||.+++|
T Consensus       265 --------------------~~~~~~~~~vT~g~Ds~lk~~  285 (967)
T KOG0974|consen  265 --------------------AVPIGVIIKVTGGNDSTLKLW  285 (967)
T ss_pred             --------------------EEcCCceEEEeeccCcchhhh
Confidence                                778888899999999999988

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.57  E-value=3.4e-13  Score=111.88  Aligned_cols=249  Identities=16%  Similarity=0.231  Sum_probs=183.9

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeC-CCCcceeEE-ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL-NTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  177 (456)
                      ..+.++||.+.|++...-|...-+++.+.|.+++||-- +.++--..+ .....+++++.+.++...|+.|-..|++.-+
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence            35667899999999999998888999999999999953 333322222 2346789999999999999999999999888


Q ss_pred             eCCCC---CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeE
Q 012799          178 DPQTG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI  254 (456)
Q Consensus       178 d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l  254 (456)
                      .+...   -...+....|...+..+.|+-     ....+++.+.|..+.---.+.+..+..+.- ...-+++.+.-. ..
T Consensus        96 s~sedfnkm~~~r~~~~h~~~v~~~if~~-----~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~-~~  168 (404)
T KOG1409|consen   96 ALSEDFNKMTFLKDYLAHQARVSAIVFSL-----THEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL-YA  168 (404)
T ss_pred             EhhhhhhhcchhhhhhhhhcceeeEEecC-----CceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE-EE
Confidence            66432   112235677899999999876     557889999887765444444433221110 001111111111 45


Q ss_pred             EEEeCCCcEEEEEC--CCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799          255 YTGSQDCTIKVWET--TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (456)
Q Consensus       255 ~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (456)
                      +.|...|.|..-.+  ..-.++.++.+|...+.+++|.+.                                    ...+
T Consensus       169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~------------------------------------~~~L  212 (404)
T KOG1409|consen  169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG------------------------------------QRLL  212 (404)
T ss_pred             EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC------------------------------------CcEE
Confidence            55666666655443  345678889999999999999987                                    5569


Q ss_pred             EEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (456)
Q Consensus       333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  391 (456)
                      ++|..|..+.+||+-........+.+|...|..+..-+--+.+.+++.||.|.+|+.+.
T Consensus       213 fSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  213 FSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             EeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            99999999999998877777778889999999999988888999999999999999764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=3.8e-13  Score=109.62  Aligned_cols=144  Identities=18%  Similarity=0.348  Sum_probs=98.8

Q ss_pred             EEEEeCCCC-eEE-EEeC---------CCcEEEEECCC-CeEEEEeec-CCcceEEEEecCcceeeeccccCCCCccCCh
Q 012799          244 TCVKWGGDG-VIY-TGSQ---------DCTIKVWETTQ-GKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (456)
Q Consensus       244 ~~~~~~~~~-~l~-~~~~---------dg~i~iwd~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (456)
                      ..+.|+++| .|+ ....         -|...+|.++. +.....+.. ..++|.+++|+|++                 
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g-----------------   71 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNG-----------------   71 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCC-----------------
Confidence            457788888 333 2221         13345555532 234444433 34579999999983                 


Q ss_pred             HHHHHHHHhhhhhccCCCCCEE--EEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC---CcEE
Q 012799          311 EEMKKAALERYNKIKGNAPERL--VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIK  385 (456)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d---g~i~  385 (456)
                                         +.+  +.|..++.+.+||++  ...+..+  +...++.+.|+|+|++|++++.+   |.+.
T Consensus        72 -------------------~~favi~g~~~~~v~lyd~~--~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~  128 (194)
T PF08662_consen   72 -------------------NEFAVIYGSMPAKVTLYDVK--GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLE  128 (194)
T ss_pred             -------------------CEEEEEEccCCcccEEEcCc--ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEE
Confidence                               334  345567899999975  2223333  35668899999999999998744   6799


Q ss_pred             EEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC------CCceEEC
Q 012799          386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK------DSTLKVT  456 (456)
Q Consensus       386 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~------Dg~v~iW  456 (456)
                      +||+++.+.+.... |. .+..+                           +|+|||++|++++.      |+.++||
T Consensus       129 ~wd~~~~~~i~~~~-~~-~~t~~---------------------------~WsPdGr~~~ta~t~~r~~~dng~~Iw  176 (194)
T PF08662_consen  129 FWDVRKKKKISTFE-HS-DATDV---------------------------EWSPDGRYLATATTSPRLRVDNGFKIW  176 (194)
T ss_pred             EEECCCCEEeeccc-cC-cEEEE---------------------------EEcCCCCEEEEEEeccceeccccEEEE
Confidence            99999998887765 33 35667                           99999999999875      6777777

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=1.2e-12  Score=118.78  Aligned_cols=267  Identities=13%  Similarity=0.194  Sum_probs=189.4

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc---------------ceeEEecCCCCEEEEEEcCCCCEEEEEeCC
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---------------PMFKCTGHKNWVLCIAWSADGKHLVSGSKA  171 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  171 (456)
                      .+....|++|+....++|+|+.||.++|..+.+..               .-.++.||...|.-+.|+.+.+.|-++..+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            45678899999999999999999999999876532               124567999999999999999999999999


Q ss_pred             CeEEEEeCCCCCCccccc-cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799          172 GELQCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (456)
Q Consensus       172 g~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  250 (456)
                      |.|.+|-+-.|.-..... ...++.|.+++|..     +|..+...-.||.|.+=.+...+. ....-...-...+.|++
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-----dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg~~l~hv~ws~  166 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-----DGTKICIVYEDGAVIVGSVDGNRI-WGKELKGQLLAHVLWSE  166 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-----CCcEEEEEEccCCEEEEeecccee-cchhcchheccceeecc
Confidence            999999998876543222 33456789999988     999999999999988766654332 11111122345788999


Q ss_pred             CC-eEEEEeCCCcEEEEECCCCeEE-------EE----eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799          251 DG-VIYTGSQDCTIKVWETTQGKLI-------RE----LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (456)
Q Consensus       251 ~~-~l~~~~~dg~i~iwd~~~~~~~-------~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (456)
                      |. .++.+-..|.+.+||....-..       ..    +...+..|..+.|....           .             
T Consensus       167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~-----------~-------------  222 (1189)
T KOG2041|consen  167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP-----------Y-------------  222 (1189)
T ss_pred             cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc-----------c-------------
Confidence            98 6677778899999997532110       00    11112223333333210           0             


Q ss_pred             hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC---------CcEEEEeC
Q 012799          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---------KSIKLWNG  389 (456)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d---------g~i~iwd~  389 (456)
                          ....++...++.+-.+|.+.+..-.+...+...-.+  -.+....|+++|..||.++.|         +.|.+|. 
T Consensus       223 ----~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-  295 (1189)
T KOG2041|consen  223 ----QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-  295 (1189)
T ss_pred             ----ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEec-
Confidence                011234567999999999998875555555544444  458899999999999999865         3577776 


Q ss_pred             CCCeEEEEEecccccEEEEEe
Q 012799          390 TTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       390 ~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      .-|..+.+++.....|++++|
T Consensus       296 p~G~i~gtlkvpg~~It~lsW  316 (1189)
T KOG2041|consen  296 PYGHIVGTLKVPGSCITGLSW  316 (1189)
T ss_pred             cchhheEEEecCCceeeeeEE
Confidence            457888888888888888844

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=2.5e-12  Score=113.37  Aligned_cols=305  Identities=16%  Similarity=0.178  Sum_probs=181.8

Q ss_pred             EEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC-----------CCeEEEEeCC
Q 012799          112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-----------AGELQCWDPQ  180 (456)
Q Consensus       112 ~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----------dg~i~vwd~~  180 (456)
                      +-+.|||.|.||+|-...| |.+|--.+-..++.+. |. .|.-+.|||..+||+|=+.           ...++|||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            5689999999999998776 9999876666666654 54 4889999999999998542           2579999999


Q ss_pred             CCCCcccccc--CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEE-
Q 012799          181 TGKPSGNPLS--GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG-  257 (456)
Q Consensus       181 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~-  257 (456)
                      +|........  .....-.-..|+.     |++++|.... ..|.||+..+..++-.-.-.-..|....|+|.+.+++- 
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~-----DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYw  364 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSH-----DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYW  364 (698)
T ss_pred             ccchhcceeccCCCccccceEEecc-----CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEE
Confidence            9987653222  1111223356666     8889888777 56999998775444333334566888899998733321 


Q ss_pred             e--C---CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCc-----------cCChH-----HHHHH
Q 012799          258 S--Q---DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ-----------YSSPE-----EMKKA  316 (456)
Q Consensus       258 ~--~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-----~~~~~  316 (456)
                      .  .   -..+.+-.+.+++.+++...++-.-..+.|...+.+.+.-.+...+.           +....     .....
T Consensus       365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel  444 (698)
T KOG2314|consen  365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL  444 (698)
T ss_pred             cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence            1  1   13466666666666655544443334444544444433322211110           00000     00000


Q ss_pred             HHhhhhhccCCCCCEEEEEeC---CCcEEEEecCC-CCCCccccccccccEeEEEECCCCCEEEEE---ECCCcEEEEeC
Q 012799          317 ALERYNKIKGNAPERLVSGSD---DFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASA---SFDKSIKLWNG  389 (456)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~---~~dg~i~iwd~  389 (456)
                      .-......+.+.|+.+++-+.   ..++.+|.+.. ...+.....-.....+.+.|+|.|++++.+   |..|.+.++|+
T Consensus       445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~  524 (698)
T KOG2314|consen  445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDT  524 (698)
T ss_pred             chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEec
Confidence            001112224455666554433   45788888763 222222222223557889999999998875   45688999998


Q ss_pred             CCCeEEEEE-ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799          390 TTGKFVAVF-RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL  453 (456)
Q Consensus       390 ~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v  453 (456)
                      .-..+..+- ..|. ..+.+                           .|.|.|+|++|++.-...
T Consensus       525 ~~a~~k~~~~~eh~-~at~v---------------------------eWDPtGRYvvT~ss~wrh  561 (698)
T KOG2314|consen  525 DYADLKDTASPEHF-AATEV---------------------------EWDPTGRYVVTSSSSWRH  561 (698)
T ss_pred             chhhhhhccCcccc-ccccc---------------------------eECCCCCEEEEeeehhhh
Confidence            742222111 1122 22334                           899999999999875543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.6e-11  Score=114.71  Aligned_cols=228  Identities=20%  Similarity=0.231  Sum_probs=142.9

Q ss_pred             cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCCccccccCcccceEEEEecccccC
Q 012799          131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN  207 (456)
Q Consensus       131 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  207 (456)
                      .|.++|.+.+. ...+..+...+....|+|||+.|+..+.+   ..|.+|++.+++...  +....+.+....|+|    
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~~~~g~~~~~~~Sp----  252 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--ITNFEGLNGAPAWSP----  252 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--ccCCCCCcCCeEECC----
Confidence            47788887544 45555677889999999999999876644   369999998886542  233334455788998    


Q ss_pred             CCCCEEEE-EeCCC--cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CCC--cEEEEECCCCeEEEEeecC
Q 012799          208 APCRRFVS-ASKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDC--TIKVWETTQGKLIRELKGH  280 (456)
Q Consensus       208 ~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~  280 (456)
                       +|+.++. .+.+|  .|++||+.+++.. .+..+........|+|+| .++..+ .+|  .|+++|+.+++.... ...
T Consensus       253 -DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~  329 (430)
T PRK00178        253 -DGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFV  329 (430)
T ss_pred             -CCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecC
Confidence             8888874 44444  6888899887644 344455556678899998 554444 333  577788877764332 212


Q ss_pred             CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-CC--cEEEEecCCCCCCccccc
Q 012799          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DF--TMFLWEPAVSKQPKTRMT  357 (456)
Q Consensus       281 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~  357 (456)
                      ........|+|+                                    ++.++..+. ++  .|.++|+..+....  +.
T Consensus       330 ~~~~~~~~~Spd------------------------------------g~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt  371 (430)
T PRK00178        330 GNYNARPRLSAD------------------------------------GKTLVMVHRQDGNFHVAAQDLQRGSVRI--LT  371 (430)
T ss_pred             CCCccceEECCC------------------------------------CCEEEEEEccCCceEEEEEECCCCCEEE--cc
Confidence            222334566666                                    445655543 33  57888876654322  21


Q ss_pred             cccccEeEEEECCCCCEEEEEECC---CcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          358 GHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       358 ~~~~~v~~~~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      . ........|+|||++|+..+.+   ..+.++++. |.....+..+.+.+...
T Consensus       372 ~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p  423 (430)
T PRK00178        372 D-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREP  423 (430)
T ss_pred             C-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCC
Confidence            1 1122346899999998776644   346677764 44444454444555555

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.52  E-value=1.3e-11  Score=115.38  Aligned_cols=229  Identities=20%  Similarity=0.224  Sum_probs=147.8

Q ss_pred             CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCCccccccCcccceEEEEeccccc
Q 012799          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (456)
Q Consensus       130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  206 (456)
                      ..|.++|.... ....+..+...+...+|+|||++|+.+..+   ..|.+||+.+++...  +..+...+.+++|+|   
T Consensus       170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--~~~~~~~~~~~~~sp---  243 (417)
T TIGR02800       170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--VASFPGMNGAPAFSP---  243 (417)
T ss_pred             ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--eecCCCCccceEECC---
Confidence            36888887644 345555677789999999999999987654   479999998876432  334455567788998   


Q ss_pred             CCCCCEEEEE-eCCC--cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC-CC--cEEEEECCCCeEEEEeec
Q 012799          207 NAPCRRFVSA-SKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ-DC--TIKVWETTQGKLIRELKG  279 (456)
Q Consensus       207 ~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-dg--~i~iwd~~~~~~~~~~~~  279 (456)
                        +++.|+.. +.++  .|++||+.++... .+..+........|+|++ .++..+. ++  .|+++|+.+++.. .+..
T Consensus       244 --Dg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~  319 (417)
T TIGR02800       244 --DGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF  319 (417)
T ss_pred             --CCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec
Confidence              88877654 4444  5889998877543 344444455577899998 5655443 33  5888888776543 3333


Q ss_pred             CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC---cEEEEecCCCCCCcccc
Q 012799          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF---TMFLWEPAVSKQPKTRM  356 (456)
Q Consensus       280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~  356 (456)
                      +........|+|+                                    +.+++.++.++   .|.+||+.....  ..+
T Consensus       320 ~~~~~~~~~~spd------------------------------------g~~i~~~~~~~~~~~i~~~d~~~~~~--~~l  361 (417)
T TIGR02800       320 RGGYNASPSWSPD------------------------------------GDLIAFVHREGGGFNIAVMDLDGGGE--RVL  361 (417)
T ss_pred             CCCCccCeEECCC------------------------------------CCEEEEEEccCCceEEEEEeCCCCCe--EEc
Confidence            4455666777777                                    55577776665   788888765332  222


Q ss_pred             ccccccEeEEEECCCCCEEEEEECCC---cEEEEeCCCCeEEEEEecccccEEEE
Q 012799          357 TGHQQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       357 ~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      ... .......|+|||++|+..+.++   .+.+.+. +++....+..+.+.+..+
T Consensus       362 ~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~  414 (417)
T TIGR02800       362 TDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREP  414 (417)
T ss_pred             cCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCC
Confidence            221 2234568999999988877654   3555553 455445454443344333

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.51  E-value=2.3e-11  Score=111.75  Aligned_cols=258  Identities=14%  Similarity=0.097  Sum_probs=162.7

Q ss_pred             CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEE-EEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceE
Q 012799          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC-IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT  197 (456)
Q Consensus       119 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~  197 (456)
                      ++..++.++.++.+..+|..+++.+...... ..+.+ ...  .+..++.++.+|.+..||.++|+.+.+....  ....
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~--~~~~  178 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRV--TPAL  178 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccC--CCce
Confidence            4667888889999999999999987765432 22221 111  3456777888999999999999875422111  1111


Q ss_pred             EEE--ecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc----c------E-EEEEeCCCCeEEEEeCCCcEE
Q 012799          198 GIS--WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL----A------V-TCVKWGGDGVIYTGSQDCTIK  264 (456)
Q Consensus       198 ~~~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~------v-~~~~~~~~~~l~~~~~dg~i~  264 (456)
                      .+.  -.|..   .+..++.+..+|.+..+|.++++.+........    .      + ....+ .++.+++++.+|.++
T Consensus       179 ~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~  254 (377)
T TIGR03300       179 TLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVA  254 (377)
T ss_pred             eecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEE
Confidence            110  11111   224677888899999999999887654321100    0      0 01111 245888889999999


Q ss_pred             EEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEE
Q 012799          265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (456)
Q Consensus       265 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  344 (456)
                      .||..+++.+.......  ......                                      .+..++.++.+|.++.+
T Consensus       255 a~d~~tG~~~W~~~~~~--~~~p~~--------------------------------------~~~~vyv~~~~G~l~~~  294 (377)
T TIGR03300       255 ALDLRSGRVLWKRDASS--YQGPAV--------------------------------------DDNRLYVTDADGVVVAL  294 (377)
T ss_pred             EEECCCCcEEEeeccCC--ccCceE--------------------------------------eCCEEEEECCCCeEEEE
Confidence            99999998776554110  011111                                      14568888899999999


Q ss_pred             ecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCcee
Q 012799          345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYC  424 (456)
Q Consensus       345 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~  424 (456)
                      |..+++..............+...  .+..|++++.+|.++++|..+|+.+..++.+...+..-.               
T Consensus       295 d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp---------------  357 (377)
T TIGR03300       295 DRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPP---------------  357 (377)
T ss_pred             ECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCC---------------
Confidence            987665433221111111222222  466889999999999999999999998886665433220               


Q ss_pred             eecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          425 VVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       425 ~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                                 .+ .+ +.|+.++.||.|+.
T Consensus       358 -----------~~-~~-~~l~v~~~dG~l~~  375 (377)
T TIGR03300       358 -----------VV-VG-DGLLVQTRDGDLYA  375 (377)
T ss_pred             -----------EE-EC-CEEEEEeCCceEEE
Confidence                       22 23 45888999999875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.51  E-value=2.4e-12  Score=106.96  Aligned_cols=253  Identities=18%  Similarity=0.312  Sum_probs=165.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC----ccccccCc------------ccceEEEEecccccCCCCCE
Q 012799          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----SGNPLSGH------------KKWITGISWEPVHLNAPCRR  212 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~  212 (456)
                      ...-|.++.|...|.+|++|..+|.|.++.-.....    .......|            ...|..+.|.+..   +...
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~---n~a~  100 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG---NLAE  100 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC---CccE
Confidence            345688999999999999999999999996543221    11112222            2457788888743   6678


Q ss_pred             EEEEeCCCcEEEEECCCCeE-----------------------------------EEEe-cCcCccEEEEEeCCCCeEEE
Q 012799          213 FVSASKDGDARIWDVSLRKC-----------------------------------VICL-SGHTLAVTCVKWGGDGVIYT  256 (456)
Q Consensus       213 l~~~~~dg~i~iwd~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~~~~~l~~  256 (456)
                      ++..+.|.+|++|-+.....                                   .+.+ .+|.--|.++.++.|+..+.
T Consensus       101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l  180 (433)
T KOG1354|consen  101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL  180 (433)
T ss_pred             EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence            89999999999998743211                                   0111 25777899999999986666


Q ss_pred             EeCCCcEEEEECCCCeE---EEEeecC-----CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799          257 GSQDCTIKVWETTQGKL---IRELKGH-----GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (456)
Q Consensus       257 ~~~dg~i~iwd~~~~~~---~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (456)
                      .+.|=.|.+|++.--..   +..++.+     ...|++..|+|.                                   .
T Consensus       181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~-----------------------------------~  225 (433)
T KOG1354|consen  181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH-----------------------------------H  225 (433)
T ss_pred             eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh-----------------------------------H
Confidence            67788899999864321   1111211     123555556654                                   2


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCcc---------------ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC-CC
Q 012799          329 PERLVSGSDDFTMFLWEPAVSKQPKT---------------RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TG  392 (456)
Q Consensus       329 ~~~l~~~~~dg~i~iwd~~~~~~~~~---------------~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~-~~  392 (456)
                      .+.++.++..|+|++-|++.....-.               .+..--..|..+.|+++|+|+++-+. -+|++||+. ..
T Consensus       226 cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~  304 (433)
T KOG1354|consen  226 CNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA  304 (433)
T ss_pred             ccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC
Confidence            56688999999999999885432111               11122246889999999999998643 579999994 46


Q ss_pred             eEEEEEecccc---cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          393 KFVAVFRGHVG---PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       393 ~~~~~~~~~~~---~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                      +++.++.-|..   .+.++ |         ++........     .+|+.++.+++|||..+..++
T Consensus       305 ~pv~t~~vh~~lr~kLc~l-Y---------EnD~IfdKFe-----c~~sg~~~~v~TGsy~n~frv  355 (433)
T KOG1354|consen  305 KPVETYPVHEYLRSKLCSL-Y---------ENDAIFDKFE-----CSWSGNDSYVMTGSYNNVFRV  355 (433)
T ss_pred             CcceEEeehHhHHHHHHHH-h---------hccchhheeE-----EEEcCCcceEecccccceEEE
Confidence            67777766643   11111 0         0000000111     189999999999999888776

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.7e-11  Score=114.08  Aligned_cols=228  Identities=17%  Similarity=0.166  Sum_probs=140.6

Q ss_pred             cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCCCccccccCcccceEEEEecccccC
Q 012799          131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN  207 (456)
Q Consensus       131 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  207 (456)
                      .+.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++...  +...........|+|    
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--lt~~~g~~~~~~wSP----  271 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--VTSFPGINGAPRFSP----  271 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--ecCCCCCcCCeeECC----
Confidence            577778765443 4555677789999999999998876543 2  58899998876432  222233345678988    


Q ss_pred             CCCCEEEE-EeCCCc--EEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CCC--cEEEEECCCCeEEEEeecC
Q 012799          208 APCRRFVS-ASKDGD--ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDC--TIKVWETTQGKLIRELKGH  280 (456)
Q Consensus       208 ~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~  280 (456)
                       +|+.|+. .+.+|.  |+++|+.+++.. .+..+.......+|+|+| .++..+ .++  .|.++|+.+++... +...
T Consensus       272 -DG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~  348 (448)
T PRK04792        272 -DGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE  348 (448)
T ss_pred             -CCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC
Confidence             8887775 455664  788888877643 444455566778999999 454433 344  46777887776433 2222


Q ss_pred             CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-CC--cEEEEecCCCCCCccccc
Q 012799          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DF--TMFLWEPAVSKQPKTRMT  357 (456)
Q Consensus       281 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~  357 (456)
                      .......+|+|+                                    +++++..+. ++  .|.++|+..+..  ..+.
T Consensus       349 g~~~~~~~~SpD------------------------------------G~~l~~~~~~~g~~~I~~~dl~~g~~--~~lt  390 (448)
T PRK04792        349 GEQNLGGSITPD------------------------------------GRSMIMVNRTNGKFNIARQDLETGAM--QVLT  390 (448)
T ss_pred             CCCCcCeeECCC------------------------------------CCEEEEEEecCCceEEEEEECCCCCe--EEcc
Confidence            222344577777                                    444555443 44  455567655432  2222


Q ss_pred             cccccEeEEEECCCCCEEEEEECC-C--cEEEEeCCCCeEEEEEecccccEEEE
Q 012799          358 GHQQLVNHVYFSPDGQWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       358 ~~~~~v~~~~~sp~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      .. .......|+|||++|+..+.+ |  .+.+++. +|.....+..+.+.+...
T Consensus       391 ~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p  442 (448)
T PRK04792        391 ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSP  442 (448)
T ss_pred             CC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCC
Confidence            11 112245799999997765544 3  3677776 566666666555555555

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.49  E-value=3.5e-13  Score=122.59  Aligned_cols=289  Identities=23%  Similarity=0.289  Sum_probs=197.1

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCC-cceeEEecCC--CCEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCC
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHK--NWVLCIAWSAD--GKHLVSGSKAGELQCWDPQTG  182 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~--~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~  182 (456)
                      .+++.++..+|.|+-+|.++.-| +.+-|+... .+..-+. |.  -.|-.+.|+|.  -.+-++......-.+|++...
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            56788899999999999998776 666777643 3333332 32  34677888874  334555555566778887533


Q ss_pred             --CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe-EEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799          183 --KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (456)
Q Consensus       183 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~-~l~~~~  258 (456)
                        +.+...+.+|...|+.+.|+|.+    -..+++++.|..+..||+++.. ++.....-....+.++|+-.. .+++.+
T Consensus       102 s~~aIef~lhghsraitd~n~~~q~----pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass  177 (1081)
T KOG0309|consen  102 SSNAIEFVLHGHSRAITDINFNPQH----PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS  177 (1081)
T ss_pred             CccceEEEEecCccceeccccCCCC----CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence              33444678999999999999864    3589999999999999998764 444544445566778898654 777788


Q ss_pred             CCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799          259 QDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (456)
Q Consensus       259 ~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (456)
                      ..+.|++||++.| .++..+++|...++.+.+....                                   ...+.+++.
T Consensus       178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~-----------------------------------~s~~~s~~~  222 (1081)
T KOG0309|consen  178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK-----------------------------------YSEIMSSSN  222 (1081)
T ss_pred             cCCceEEEeccCCCcceEEecccceeeehHHHhhhh-----------------------------------hhhhcccCC
Confidence            8889999999876 5677888888888887776431                                   223889999


Q ss_pred             CCcEEEEecCCCCCCccccccccccEeEEEECCCCC--EEEEEECCCcEEEEeC---------CC-CeEEEEEecccccE
Q 012799          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ--WVASASFDKSIKLWNG---------TT-GKFVAVFRGHVGPV  405 (456)
Q Consensus       338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~~~dg~i~iwd~---------~~-~~~~~~~~~~~~~v  405 (456)
                      |+++++||..+.............+|..-++-|-|.  ++.---.+..+.+++.         .+ .+.+..|.||.+.|
T Consensus       223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V  302 (1081)
T KOG0309|consen  223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV  302 (1081)
T ss_pred             CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence            999999998776555544555566777777777443  3322222234444443         33 45688999999988


Q ss_pred             EEEEeeeeeeecCCCCceeeecccccccceeEecCC--CeEEEeeCCCceEEC
Q 012799          406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS--RLLLSGSKDSTLKVT  456 (456)
Q Consensus       406 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~s~s~Dg~v~iW  456 (456)
                      ...-|-....        |           .+.-|.  -.|+|=|.|.++|+|
T Consensus       303 ~eFlWR~r~e--------~-----------~~d~d~rdfQLVTWSkD~~lrlW  336 (1081)
T KOG0309|consen  303 LEFLWRKRKE--------C-----------DGDYDSRDFQLVTWSKDQTLRLW  336 (1081)
T ss_pred             HHHhhhhccc--------c-----------cCCCCccceeEEEeecCCceEee
Confidence            6652211100        0           111122  279999999999999

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=3e-11  Score=113.01  Aligned_cols=184  Identities=21%  Similarity=0.200  Sum_probs=120.8

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECC---CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEE-EeCCC-
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAG-  172 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg-  172 (456)
                      +...+.+..+...+...+|+|||+.|+..+.+   ..|.+|++.+++... +....+.+....|+|||+.|+. ...+| 
T Consensus       188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~  266 (430)
T PRK00178        188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGN  266 (430)
T ss_pred             CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCC
Confidence            44456677788899999999999999877643   369999998876433 3334445667899999998874 44455 


Q ss_pred             -eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CC--cEEEEECCCCeEEEEecCcCccEEEEEe
Q 012799          173 -ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DG--DARIWDVSLRKCVICLSGHTLAVTCVKW  248 (456)
Q Consensus       173 -~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~  248 (456)
                       .|.+||+.+++...  +..+........|+|     +|+.++..+. +|  .|+++|+.+++...... .........|
T Consensus       267 ~~Iy~~d~~~~~~~~--lt~~~~~~~~~~~sp-----Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~  338 (430)
T PRK00178        267 PEIYVMDLASRQLSR--VTNHPAIDTEPFWGK-----DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRL  338 (430)
T ss_pred             ceEEEEECCCCCeEE--cccCCCCcCCeEECC-----CCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEE
Confidence             58888998876532  444455566778888     8888876654 33  57778887776433221 2223345789


Q ss_pred             CCCC-eEEEEeC-CC--cEEEEECCCCeEEEEeecCCcceEEEEecCc
Q 012799          249 GGDG-VIYTGSQ-DC--TIKVWETTQGKLIRELKGHGHWVNSLALSTE  292 (456)
Q Consensus       249 ~~~~-~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  292 (456)
                      +|+| .++..+. ++  .|.+||+.+++.. .+.. ........|+|+
T Consensus       339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spd  384 (430)
T PRK00178        339 SADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPN  384 (430)
T ss_pred             CCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCC
Confidence            9999 5554443 33  5888999887643 2321 112234567776

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.47  E-value=1e-10  Score=102.52  Aligned_cols=276  Identities=18%  Similarity=0.235  Sum_probs=183.1

Q ss_pred             cccEEEEEECCCCCeEEEEECCC---------------cEEEEeCCCCcceeEEecCCCC--EE-EEEEcCCCCEEEEEe
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDT---------------TVRLWDLNTQTPMFKCTGHKNW--VL-CIAWSADGKHLVSGS  169 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~---------------~v~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~s~~  169 (456)
                      ...|..+.|+|.+++|.+-+..+               .+.+||+.++..+..+.....+  .. -+.|+-+.+++|-..
T Consensus        71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv  150 (561)
T COG5354          71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV  150 (561)
T ss_pred             cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence            34688999999999999865433               4999999999999888766655  55 688998888877553


Q ss_pred             CCCeEEEEeCCCCCCccccccCc-ccceEEEEecccccCCCCCEEEE-----EeCCCcEEEEECCCCeEEEEecCcCccE
Q 012799          170 KAGELQCWDPQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVS-----ASKDGDARIWDVSLRKCVICLSGHTLAV  243 (456)
Q Consensus       170 ~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v  243 (456)
                       ...+.|+++ ++.........- ...+....|+|..   ++..|+.     .+.++.+++|.+..++.+.+..-....=
T Consensus       151 -~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~---n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~  225 (561)
T COG5354         151 -GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG---NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSG  225 (561)
T ss_pred             -cCeEEEEec-CCccccCchhhccccceeeEEecCCC---CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecc
Confidence             347999997 444322112111 2567888888853   3444554     4668899999998777665544334444


Q ss_pred             EEEEeCCCC-eEEE-E----------eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChH
Q 012799          244 TCVKWGGDG-VIYT-G----------SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (456)
Q Consensus       244 ~~~~~~~~~-~l~~-~----------~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (456)
                      ..+.|.+.| .+++ .          .....++++++..... .......++|...+|.|...                 
T Consensus       226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~-----------------  287 (561)
T COG5354         226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSS-----------------  287 (561)
T ss_pred             cEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCC-----------------
Confidence            567788877 3322 1          1124678888874333 22225678899999998732                 


Q ss_pred             HHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC---CcEEEEe
Q 012799          312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWN  388 (456)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d---g~i~iwd  388 (456)
                                       +--+++|-.+..+.++|++..  ..  +...+..=+.+.|+|.+++++.++-|   |.+-+||
T Consensus       288 -----------------~F~vi~g~~pa~~s~~~lr~N--l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~  346 (561)
T COG5354         288 -----------------RFAVISGYMPASVSVFDLRGN--LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFD  346 (561)
T ss_pred             -----------------ceeEEecccccceeecccccc--eE--EecCCcccccccccCcccEEEEecCCccccceEEec
Confidence                             112556678889999997654  22  22334445678899999998887765   6899999


Q ss_pred             CCCCeEEE-EEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC------CCceEEC
Q 012799          389 GTTGKFVA-VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK------DSTLKVT  456 (456)
Q Consensus       389 ~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~------Dg~v~iW  456 (456)
                      ......+. .+.+....  -+                           .|+|||+++.+...      |..++||
T Consensus       347 ~~~rf~~~~~~~~~n~s--~~---------------------------~wspd~qF~~~~~ts~k~~~Dn~i~l~  392 (561)
T COG5354         347 PAGRFKVAGAFNGLNTS--YC---------------------------DWSPDGQFYDTDTTSEKLRVDNSIKLW  392 (561)
T ss_pred             cCCceEEEEEeecCCce--Ee---------------------------eccCCceEEEecCCCcccccCcceEEE
Confidence            77654433 45433221  12                           68888888776632      6666666

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.47  E-value=3.3e-11  Score=108.37  Aligned_cols=257  Identities=20%  Similarity=0.172  Sum_probs=158.4

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEE-CCCcEEEEeCCCCcceeEEecC-------CCCEEEEEEcCCCCEEEEEeC-
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSADGKHLVSGSK-  170 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~-~d~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~-  170 (456)
                      .+++++... .-.++++|+||++++++. ..+.+.++|.++.+++..+...       ...+..+..+|....++..-. 
T Consensus        70 ~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd  148 (369)
T PF02239_consen   70 VVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD  148 (369)
T ss_dssp             EEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred             EEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence            344454433 457899999999998776 6889999999999988887632       356788888888886665555 


Q ss_pred             CCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEEEec----CcCccEEE
Q 012799          171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLS----GHTLAVTC  245 (456)
Q Consensus       171 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~  245 (456)
                      .+.|.+-|....+.................|.|     ++++++++ ..+..|-++|..+++.+..+.    .|..+...
T Consensus       149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-----dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~  223 (369)
T PF02239_consen  149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-----DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGAN  223 (369)
T ss_dssp             TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-----TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEE
T ss_pred             CCeEEEEEeccccccceeeecccccccccccCc-----ccceeeecccccceeEEEeeccceEEEEeecccccccccccc
Confidence            488888888766543322333344567788888     88887665 456789999999988776552    23334433


Q ss_pred             EEeCC---------CC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHH
Q 012799          246 VKWGG---------DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (456)
Q Consensus       246 ~~~~~---------~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (456)
                      +-...         .+ ..++.-....+.+||....+.++++...+.+ .-+..+|+                       
T Consensus       224 ~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~-----------------------  279 (369)
T PF02239_consen  224 FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPD-----------------------  279 (369)
T ss_dssp             EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-----------------------
T ss_pred             ccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCC-----------------------
Confidence            32111         11 2222223345667888999999999877776 77788887                       


Q ss_pred             HHHhhhhhccCCCCCEEEEE----eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC--CcEEEEeC
Q 012799          316 AALERYNKIKGNAPERLVSG----SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD--KSIKLWNG  389 (456)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d--g~i~iwd~  389 (456)
                                   +.++++.    ...+.|.++|..+.+.......+....+..+.|+++|+.+..+..+  |.|.+||.
T Consensus       280 -------------s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  280 -------------SRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             --------------SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred             -------------CccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence                         4456666    4568999999766532222212222348899999999986655443  36999999


Q ss_pred             CCCeEEEEEe
Q 012799          390 TTGKFVAVFR  399 (456)
Q Consensus       390 ~~~~~~~~~~  399 (456)
                      .+.+.+..+.
T Consensus       347 ~Tl~~~~~i~  356 (369)
T PF02239_consen  347 KTLKEKKRIP  356 (369)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCcEEEEEEE
Confidence            9999998887

...

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.45  E-value=1.8e-11  Score=109.07  Aligned_cols=163  Identities=23%  Similarity=0.334  Sum_probs=131.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEecCc---CccEEEEEe--------------------CCCC-eEEEEeCCCcEE
Q 012799          209 PCRRFVSASKDGDARIWDVSLRKCVICLSGH---TLAVTCVKW--------------------GGDG-VIYTGSQDCTIK  264 (456)
Q Consensus       209 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~--------------------~~~~-~l~~~~~dg~i~  264 (456)
                      ...++|....||.+++||...++....+...   .+..++..|                    +.+. .++-|...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            5678999999999999999988876665321   233344444                    1122 688899999999


Q ss_pred             EEECCCCeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEE
Q 012799          265 VWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (456)
Q Consensus       265 iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  342 (456)
                      +|+...++.-..+.  .|.+.|+++.++.+                                    -..|.+++.|+.+.
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~------------------------------------~~ciyS~~ad~~v~  127 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDAQR------------------------------------LGCIYSVGADLKVV  127 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeecccc------------------------------------cCceEecCCceeEE
Confidence            99999999888775  47888999888776                                    34599999999999


Q ss_pred             EEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       343 iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      .|+... .............+.+++.+|||..+++++  +.|++||+++++.+..|.+|.++|+++.|
T Consensus       128 ~~~~~~-~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f  192 (541)
T KOG4547|consen  128 YILEKE-KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSF  192 (541)
T ss_pred             EEeccc-ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence            999544 445566677778899999999999999885  67999999999999999999999999944

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.45  E-value=3.9e-11  Score=112.11  Aligned_cols=184  Identities=23%  Similarity=0.229  Sum_probs=125.3

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECC---CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEE-EeCCC-
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAG-  172 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg-  172 (456)
                      +...+.+..+...+.+.+|+|||++||.++.+   ..|++||+.+++... +..+...+.+++|+|||+.|+. .+.++ 
T Consensus       179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~  257 (417)
T TIGR02800       179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGN  257 (417)
T ss_pred             CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCC
Confidence            34456677778889999999999999987644   479999998875433 3345666778999999997764 44444 


Q ss_pred             -eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC-C--cEEEEECCCCeEEEEecCcCccEEEEEe
Q 012799          173 -ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-G--DARIWDVSLRKCVICLSGHTLAVTCVKW  248 (456)
Q Consensus       173 -~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~  248 (456)
                       .|.+||+.++....  +..+........|+|     +++.++..+.. +  .|+++|+.+++.. .+..+........|
T Consensus       258 ~~i~~~d~~~~~~~~--l~~~~~~~~~~~~s~-----dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~  329 (417)
T TIGR02800       258 PDIYVMDLDGKQLTR--LTNGPGIDTEPSWSP-----DGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSW  329 (417)
T ss_pred             ccEEEEECCCCCEEE--CCCCCCCCCCEEECC-----CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEE
Confidence             58888988775432  333444455678888     88888776543 3  5888888776543 33334556778899


Q ss_pred             CCCC-eEEEEeCCC---cEEEEECCCCeEEEEeecCCcceEEEEecCc
Q 012799          249 GGDG-VIYTGSQDC---TIKVWETTQGKLIRELKGHGHWVNSLALSTE  292 (456)
Q Consensus       249 ~~~~-~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  292 (456)
                      +|++ .++.++.++   .|.+||+.++... .+... .......|+|+
T Consensus       330 spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spd  375 (417)
T TIGR02800       330 SPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPN  375 (417)
T ss_pred             CCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCC
Confidence            9999 676666665   7899998875432 22221 12334456666

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.45  E-value=3.3e-11  Score=107.48  Aligned_cols=168  Identities=19%  Similarity=0.222  Sum_probs=140.4

Q ss_pred             CCCCeEEEEECCCcEEEEeCCCCcceeEEec---CCCCEEEEEEc--------------------CCCCEEEEEeCCCeE
Q 012799          118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCTG---HKNWVLCIAWS--------------------ADGKHLVSGSKAGEL  174 (456)
Q Consensus       118 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~--------------------~~~~~l~s~~~dg~i  174 (456)
                      |-+.++|....||.+++|+..+++....+..   -.+..++..|.                    .+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4567899999999999999998876665542   23344455542                    234467788889999


Q ss_pred             EEEeCCCCCCccccc-cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-
Q 012799          175 QCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-  252 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  252 (456)
                      .+|+...|+...+.. ..|.+.|.++.+..     +-..|.+++.|+.+..|+....+.++..++.+..+.+++.+||+ 
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~-----~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ-----RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeeccc-----ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            999999998766544 67999999999887     67899999999999999999999999999999999999999999 


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCc
Q 012799          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE  292 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  292 (456)
                      .+++++  +.|++||+++++.+..|.+|.++|++++|...
T Consensus       158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence            776665  47999999999999999999999999998765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=6.9e-11  Score=110.09  Aligned_cols=221  Identities=20%  Similarity=0.174  Sum_probs=136.0

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECC-C--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEE-EeCCCe--E
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGD-T--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGE--L  174 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d-~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~--i  174 (456)
                      .+.+..+...+.+..|+|||+.|+..+.+ +  .|++||+.+++... +....+.....+|+|||+.|+. .+.+|.  |
T Consensus       210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~I  288 (448)
T PRK04792        210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEI  288 (448)
T ss_pred             ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence            44566677788999999999999876543 2  58889998776432 3323334457899999998875 455664  7


Q ss_pred             EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CC--cEEEEECCCCeEEEEecCcCccEEEEEeCCC
Q 012799          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGD  251 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  251 (456)
                      .++|+.+++...  +..+........|+|     +++.++..+. ++  .|+++|+.+++..... .........+|+|+
T Consensus       289 y~~dl~tg~~~~--lt~~~~~~~~p~wSp-----DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpD  360 (448)
T PRK04792        289 YVVDIATKALTR--ITRHRAIDTEPSWHP-----DGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPD  360 (448)
T ss_pred             EEEECCCCCeEE--CccCCCCccceEECC-----CCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCC
Confidence            778888776432  344445567788998     8888876654 33  5677787776643322 12222345689999


Q ss_pred             C-eEEEEe-CCC--cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799          252 G-VIYTGS-QDC--TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (456)
Q Consensus       252 ~-~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (456)
                      | .++..+ .++  .|.++|+.+++... +... .......|+|+                                   
T Consensus       361 G~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spd-----------------------------------  403 (448)
T PRK04792        361 GRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPN-----------------------------------  403 (448)
T ss_pred             CCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCC-----------------------------------
Confidence            9 554443 344  45667887775432 2211 11223456666                                   


Q ss_pred             CCCEEEEEe-CCCc--EEEEecCCCCCCccccccccccEeEEEECC
Q 012799          328 APERLVSGS-DDFT--MFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (456)
Q Consensus       328 ~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp  370 (456)
                       +..++..+ .++.  +++++.. + .....+..+.+.+...+|+|
T Consensus       404 -G~~I~~~~~~~g~~~l~~~~~~-G-~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        404 -GTMVIYSTTYQGKQVLAAVSID-G-RFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             -CCEEEEEEecCCceEEEEEECC-C-CceEECcCCCCCcCCCccCC
Confidence             44454443 3443  6666642 2 23333444555677778887

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.42  E-value=3.2e-09  Score=95.77  Aligned_cols=249  Identities=17%  Similarity=0.223  Sum_probs=159.2

Q ss_pred             ccEEEEEECCCCCeEEEEEC----CCcEEEEeCCCC--c--ceeEEecCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeC
Q 012799          109 EAVLSVAFSPDGRQLASGSG----DTTVRLWDLNTQ--T--PMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDP  179 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~----d~~v~vwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~  179 (456)
                      .....++++|++++|.+...    ++.|..|++...  +  .+............++++|++++|+++.. +|.|.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            34456889999999998876    568999988764  2  22333334556678999999999998875 889999999


Q ss_pred             CCCCCcccc---c----------cCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCe--EE--EEe-cCcC
Q 012799          180 QTGKPSGNP---L----------SGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRK--CV--ICL-SGHT  240 (456)
Q Consensus       180 ~~~~~~~~~---~----------~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~--~~--~~~-~~~~  240 (456)
                      .....+...   .          ........++.++|     +++++++... ...|.+|++....  ..  ..+ ....
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-----dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G  191 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-----DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG  191 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-----TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECC-----CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence            874222111   1          11234467888888     8888887654 3479999987654  21  222 2345


Q ss_pred             ccEEEEEeCCCC-eE-EEEeCCCcEEEEECC--CCeE--EEEeecC------CcceEEEEecCcceeeeccccCCCCccC
Q 012799          241 LAVTCVKWGGDG-VI-YTGSQDCTIKVWETT--QGKL--IRELKGH------GHWVNSLALSTEYALRTGAFDHTGKQYS  308 (456)
Q Consensus       241 ~~v~~~~~~~~~-~l-~~~~~dg~i~iwd~~--~~~~--~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~  308 (456)
                      ...+.+.|+|++ ++ ++...++.|.++++.  ++..  +..+...      ......+.++|+                
T Consensus       192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd----------------  255 (345)
T PF10282_consen  192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD----------------  255 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT----------------
T ss_pred             CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC----------------
Confidence            667899999998 44 445567889999988  4432  2222211      124667888887                


Q ss_pred             ChHHHHHHHHhhhhhccCCCCCEEEE-EeCCCcEEEEecCCCCCCcc---ccccccccEeEEEECCCCCEEEEEE-CCCc
Q 012799          309 SPEEMKKAALERYNKIKGNAPERLVS-GSDDFTMFLWEPAVSKQPKT---RMTGHQQLVNHVYFSPDGQWVASAS-FDKS  383 (456)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~  383 (456)
                                          +++|++ ...++.|.+|++......+.   .........+.++++|+|++|+++. .++.
T Consensus       256 --------------------g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~  315 (345)
T PF10282_consen  256 --------------------GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT  315 (345)
T ss_dssp             --------------------SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred             --------------------CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence                                444554 44577899999843322221   2222234589999999999988876 5568


Q ss_pred             EEEEeC--CCCeEEEEE
Q 012799          384 IKLWNG--TTGKFVAVF  398 (456)
Q Consensus       384 i~iwd~--~~~~~~~~~  398 (456)
                      |.+|++  .+|.+...-
T Consensus       316 v~vf~~d~~tG~l~~~~  332 (345)
T PF10282_consen  316 VSVFDIDPDTGKLTPVG  332 (345)
T ss_dssp             EEEEEEETTTTEEEEEE
T ss_pred             EEEEEEeCCCCcEEEec
Confidence            999865  577765443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.41  E-value=8.5e-12  Score=118.12  Aligned_cols=197  Identities=23%  Similarity=0.339  Sum_probs=156.4

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCC----EEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----VLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  182 (456)
                      -.+.|....+..+.+.++.++.++.+.+||...+.....+......    ..-+.++++.-++++|+--+.|.+|+....
T Consensus        86 ~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d  165 (967)
T KOG0974|consen   86 FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED  165 (967)
T ss_pred             ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence            4556666667777788999999999999999877666655533221    222345567779999999999999999843


Q ss_pred             CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE-EecCcCccEEEEEeCCCCeEEEEeCCC
Q 012799          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGVIYTGSQDC  261 (456)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~dg  261 (456)
                      +... .+.+|.+.+..+.|+-     +|.++++.+.|.++++|++++.+... ..-+|...+..+++.|+ .+++++.|.
T Consensus       166 n~p~-~l~GHeG~iF~i~~s~-----dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedc  238 (967)
T KOG0974|consen  166 NKPI-RLKGHEGSIFSIVTSL-----DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDC  238 (967)
T ss_pred             CCcc-eecccCCceEEEEEcc-----CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccce
Confidence            3332 5899999999999988     99999999999999999999987766 66789999999999999 999999999


Q ss_pred             cEEEEECCCCeEEEEeecCC-cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799          262 TIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (456)
Q Consensus       262 ~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  340 (456)
                      +.++|+.. ++.+..+..|. ..+..++..+..                                    ..+++++.|+.
T Consensus       239 tcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~------------------------------------~~~vT~g~Ds~  281 (967)
T KOG0974|consen  239 TCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGV------------------------------------IIKVTGGNDST  281 (967)
T ss_pred             EEEEEecc-cceehhhhhhhhcceeEEEEcCCc------------------------------------eEEEeeccCcc
Confidence            99999754 45555666554 457788887763                                    34899999999


Q ss_pred             EEEEecC
Q 012799          341 MFLWEPA  347 (456)
Q Consensus       341 i~iwd~~  347 (456)
                      +++||+.
T Consensus       282 lk~~~l~  288 (967)
T KOG0974|consen  282 LKLWDLN  288 (967)
T ss_pred             hhhhhhh
Confidence            9999854

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.41  E-value=2e-12  Score=114.17  Aligned_cols=174  Identities=19%  Similarity=0.306  Sum_probs=131.7

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC-------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  174 (456)
                      ..+.||...|..++--.+.+-+++++.|++|++|.++.       ..+..+++.|..+|..+.|-.+-++++++  ||-|
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi  806 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI  806 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence            56789999999999888888899999999999999864       23567788999999999999998888765  7899


Q ss_pred             EEEeCCCCCCccccccC-cccceEEEEecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEEEec-----CcCccEEEEE
Q 012799          175 QCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLS-----GHTLAVTCVK  247 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~  247 (456)
                      ++||.--++.+...... ..+.+..+...+.   -+...+++| +...+|+++|.+..+-...++     +....+.+++
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~n---v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN---VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEeccc---CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            99998877765533221 1222333333231   122334444 778999999999876555443     3456789999


Q ss_pred             eCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC
Q 012799          248 WGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGH  280 (456)
Q Consensus       248 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~  280 (456)
                      +.+.| .++++-.+|.|.+.|.++|+.+...+..
T Consensus       884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpm  917 (1034)
T KOG4190|consen  884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPM  917 (1034)
T ss_pred             eccCcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence            99988 9999999999999999999987766543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1.8e-10  Score=106.44  Aligned_cols=232  Identities=13%  Similarity=0.040  Sum_probs=140.1

Q ss_pred             CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE---EEEeCCC--eEEEEeCCCCCCccccccCcccceEEEEeccc
Q 012799          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL---VSGSKAG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPV  204 (456)
Q Consensus       130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  204 (456)
                      ..|.+.|.+.+.. ..+......+..-+|+|||+.+   ++...+|  .|.+.++.+++...  +....+......|+| 
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--lt~~~g~~~~p~wSP-  240 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--ILALQGNQLMPTFSP-  240 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--eecCCCCccceEECC-
Confidence            3677778765543 3454456667888999999752   2444444  57778888776543  333445556788999 


Q ss_pred             ccCCCCCEEEEEeC-CC----cEEEEECCCC---eEEEEecCcCccEEEEEeCCCC-eEEEEe-CCCcEEEE--ECCC-C
Q 012799          205 HLNAPCRRFVSASK-DG----DARIWDVSLR---KCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDCTIKVW--ETTQ-G  271 (456)
Q Consensus       205 ~~~~~~~~l~~~~~-dg----~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg~i~iw--d~~~-~  271 (456)
                          ||+.|+..+. +|    .+..|++..+   +...............+|+|+| .|+..+ .+|...+|  ++.. +
T Consensus       241 ----DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g  316 (428)
T PRK01029        241 ----RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG  316 (428)
T ss_pred             ----CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence                9988887653 22    3444676542   3233332333344678999999 555444 46654454  4432 2


Q ss_pred             eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC---CcEEEEecCC
Q 012799          272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD---FTMFLWEPAV  348 (456)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~  348 (456)
                      .....+......+....|+|+                                    ++.|+..+.+   ..|.+||+..
T Consensus       317 ~~~~~lt~~~~~~~~p~wSPD------------------------------------G~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        317 QSPRLLTKKYRNSSCPAWSPD------------------------------------GKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             cceEEeccCCCCccceeECCC------------------------------------CCEEEEEEcCCCCcEEEEEECCC
Confidence            333444444455677888888                                    4446554432   4689999766


Q ss_pred             CCCCccccccccccEeEEEECCCCCEEEEEEC---CCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---DKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       349 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      +...  .+......+....|+|||++|+....   .+.|.++|+..++...... ..+.+...
T Consensus       361 g~~~--~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p  420 (428)
T PRK01029        361 GRDY--QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFP  420 (428)
T ss_pred             CCeE--EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCc
Confidence            5432  22222345677899999998775443   3568888988776544433 33344444

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.39  E-value=3.3e-12  Score=127.03  Aligned_cols=192  Identities=17%  Similarity=0.290  Sum_probs=154.4

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  180 (456)
                      ..++.|-..|.++.=+|...+.+||+.||.|++|....++.+..+. .....|+.+.|+.+|+.+..+..||.+.+|...
T Consensus      2202 ~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence            3455677889999999999999999999999999998888777664 233889999999999999999999999999987


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCCEEEEEe---CCCcEEEEECCCC---eEEEEecCcCccEEEEEeCCCC-e
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDVSLR---KCVICLSGHTLAVTCVKWGGDG-V  253 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~  253 (456)
                      .  ........|.....+..|..       ..+++++   .++.+.+||....   .++.  ..|.+.++++++-|.. .
T Consensus      2282 p--k~~~s~qchnk~~~Df~Fi~-------s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~ql 2350 (2439)
T KOG1064|consen 2282 P--KPYTSWQCHNKALSDFRFIG-------SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQL 2350 (2439)
T ss_pred             C--cceeccccCCccccceeeee-------hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceE
Confidence            2  22235677888888888854       4566654   4788999997432   2333  7899999999999988 9


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE
Q 012799          254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (456)
Q Consensus       254 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (456)
                      |++|+.+|.|++||++..+.++.++.         +.                                     ..++++
T Consensus      2351 lisggr~G~v~l~D~rqrql~h~~~~---------~~-------------------------------------~~~~f~ 2384 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQLRHTFQA---------LD-------------------------------------TREYFV 2384 (2439)
T ss_pred             EEecCCcCcEEEeehHHHHHHHHhhh---------hh-------------------------------------hhheee
Confidence            99999999999999998887766653         11                                     145699


Q ss_pred             EEeCCCcEEEEecCCCC
Q 012799          334 SGSDDFTMFLWEPAVSK  350 (456)
Q Consensus       334 ~~~~dg~i~iwd~~~~~  350 (456)
                      +|+..|.++||++....
T Consensus      2385 ~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             ccCcccceEEEEccccc
Confidence            99999999999977654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=5.9e-10  Score=103.05  Aligned_cols=231  Identities=17%  Similarity=0.133  Sum_probs=139.8

Q ss_pred             cccccccccCCcccEEEEEECCCCCeEE---EEECCC--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC-
Q 012799           97 VNRCSATIAGHTEAVLSVAFSPDGRQLA---SGSGDT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-  170 (456)
Q Consensus        97 ~~~~~~~l~~h~~~V~~~~~s~~~~~l~---~~~~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-  170 (456)
                      .+...+.|..+...+.+-+|+|||+.++   +...+|  .|.+.++.+++.. .+....+.....+|+|||+.|+..+. 
T Consensus       173 dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~  251 (428)
T PRK01029        173 DGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDR  251 (428)
T ss_pred             CCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECC
Confidence            3444556666677788899999997532   333333  5778888876543 33334555667899999998887653 


Q ss_pred             CC----eEEEEeCCCCC--CccccccCcccceEEEEecccccCCCCCEEEEEe-CCCcEEEE--ECCC-CeEEEEecCcC
Q 012799          171 AG----ELQCWDPQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIW--DVSL-RKCVICLSGHT  240 (456)
Q Consensus       171 dg----~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~-~~~~~~~~~~~  240 (456)
                      +|    .+..|++..+.  ................+|+|     +|+.|+..+ .+|...+|  ++.. +.....+..+.
T Consensus       252 ~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-----DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~  326 (428)
T PRK01029        252 YGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-----DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY  326 (428)
T ss_pred             CCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-----CCCEEEEEECCCCCceEEEEECcccccceEEeccCC
Confidence            23    34557776532  11212222223446778998     999888765 45654555  4432 23344444445


Q ss_pred             ccEEEEEeCCCC-eEEEEeCC---CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799          241 LAVTCVKWGGDG-VIYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (456)
Q Consensus       241 ~~v~~~~~~~~~-~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (456)
                      ..+....|+|+| .|+..+.+   ..|.+||+.+++..... .....+....|+|+                        
T Consensus       327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpD------------------------  381 (428)
T PRK01029        327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAID------------------------  381 (428)
T ss_pred             CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCC------------------------
Confidence            567788999999 55554432   36999999888764333 23345667888887                        


Q ss_pred             HHhhhhhccCCCCCEEEEE-eC--CCcEEEEecCCCCCCccccccccccEeEEEECCCC
Q 012799          317 ALERYNKIKGNAPERLVSG-SD--DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG  372 (456)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~  372 (456)
                                  ++.|+.. ..  ...|+++|+..+..  ..+....+.+...+|+|-.
T Consensus       382 ------------G~~L~f~~~~~g~~~L~~vdl~~g~~--~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        382 ------------SLHLVYSAGNSNESELYLISLITKKT--RKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             ------------CCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCcccCceecCCC
Confidence                        3445433 22  35688888765432  2232334456677888743

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.39  E-value=3e-11  Score=100.55  Aligned_cols=244  Identities=15%  Similarity=0.178  Sum_probs=176.5

Q ss_pred             ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC
Q 012799          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ-TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (456)
Q Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg  220 (456)
                      .+..+.||.+.++....-|...-+++.+.|.+++||--+ .++.-..+......++.++.+.+     ....|++|-..|
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-----e~~~L~vg~~ng   90 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-----ESRRLYVGQDNG   90 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-----cceEEEEEEecc
Confidence            345677899999998888888889999999999999543 44444334444567788898888     778999999999


Q ss_pred             cEEEEEC----CCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCccee
Q 012799          221 DARIWDV----SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (456)
Q Consensus       221 ~i~iwd~----~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  295 (456)
                      ++.-+.+    +.....+....|...+..+.|+-.. .+++.+.|..+.---.+.+..+....     ..+.+..++..+
T Consensus        91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-----~~~~~t~~~~d~  165 (404)
T KOG1409|consen   91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-----FETPASALQFDA  165 (404)
T ss_pred             eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-----eeccCCCCceee
Confidence            9988865    4455566677899999999998766 88888888776544344443322111     011111111110


Q ss_pred             eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCC-CCCCccccccccccEeEEEECCCCCE
Q 012799          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQW  374 (456)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~  374 (456)
                                                        .+...|...|.+..-.+.. .-.++..+.+|.+.+.+++|.|..+.
T Consensus       166 ----------------------------------~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~  211 (404)
T KOG1409|consen  166 ----------------------------------LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRL  211 (404)
T ss_pred             ----------------------------------EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcE
Confidence                                              1245566666666555433 33466778899999999999999999


Q ss_pred             EEEEECCCcEEEEeCCCCeE-EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799          375 VASASFDKSIKLWNGTTGKF-VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL  453 (456)
Q Consensus       375 l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v  453 (456)
                      |.+|..|..+.+||+.-.+- ...+.+|...|..+                           ..-+--+.|++++.||.|
T Consensus       212 LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l---------------------------~~~~~t~~l~S~~edg~i  264 (404)
T KOG1409|consen  212 LFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL---------------------------SYAQHTRQLISCGEDGGI  264 (404)
T ss_pred             EEeccccCceEEEeccCCcceeeeeccchhhhhhh---------------------------hhhhhheeeeeccCCCeE
Confidence            99999999999999876543 45677899988888                           445666899999999999


Q ss_pred             EEC
Q 012799          454 KVT  456 (456)
Q Consensus       454 ~iW  456 (456)
                      -+|
T Consensus       265 ~~w  267 (404)
T KOG1409|consen  265 VVW  267 (404)
T ss_pred             EEE
Confidence            988

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.38  E-value=4e-09  Score=95.18  Aligned_cols=266  Identities=17%  Similarity=0.183  Sum_probs=160.6

Q ss_pred             EEEEECC----CcEEEEeC--CCCcceeEE-ecCCCCEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCC--CCccc-c
Q 012799          123 LASGSGD----TTVRLWDL--NTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSK----AGELQCWDPQTG--KPSGN-P  188 (456)
Q Consensus       123 l~~~~~d----~~v~vwd~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~--~~~~~-~  188 (456)
                      ++.|+..    +.|.+|++  ++++....- .........++++|++++|.+...    ++.|..|++...  +.... .
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            4556655    68999888  333322111 124455677999999999999877    468999988764  22110 1


Q ss_pred             ccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCC-CeEEEE---ec----------CcCccEEEEEeCCCC-
Q 012799          189 LSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSL-RKCVIC---LS----------GHTLAVTCVKWGGDG-  252 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~-  252 (456)
                      ..........++++|     ++++++++.. +|.|.++++.. +.....   +.          .......++.++|++ 
T Consensus        82 ~~~~g~~p~~i~~~~-----~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~  156 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDP-----DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR  156 (345)
T ss_dssp             EEESSSCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred             eccCCCCcEEEEEec-----CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence            111233456677777     8888888864 89999999976 333222   11          123457889999998 


Q ss_pred             eEEEEe-CCCcEEEEECCCCe--EE--EEee-cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799          253 VIYTGS-QDCTIKVWETTQGK--LI--RELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (456)
Q Consensus       253 ~l~~~~-~dg~i~iwd~~~~~--~~--~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (456)
                      .+++.. ....|.+|++....  ..  ..+. .....-+.+.|+|++.+                               
T Consensus       157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-------------------------------  205 (345)
T PF10282_consen  157 FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-------------------------------  205 (345)
T ss_dssp             EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-------------------------------
T ss_pred             EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-------------------------------
Confidence            555543 34579999987654  32  2222 34456778899988432                               


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCcc------cc---ccccccEeEEEECCCCCEEEEEE-CCCcEEEEeCC--CCeE
Q 012799          327 NAPERLVSGSDDFTMFLWEPAVSKQPKT------RM---TGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGT--TGKF  394 (456)
Q Consensus       327 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~------~~---~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~--~~~~  394 (456)
                          .+++.-.++.|.++++........      .+   .........++++|||++|+++. ..+.|.+|++.  +|++
T Consensus       206 ----~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l  281 (345)
T PF10282_consen  206 ----AYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL  281 (345)
T ss_dssp             ----EEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE
T ss_pred             ----EEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce
Confidence                244555677888888762221111      11   01122578899999999977765 56789999983  3433


Q ss_pred             --EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC-CCceEE
Q 012799          395 --VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKV  455 (456)
Q Consensus       395 --~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~-Dg~v~i  455 (456)
                        +..+......-..+                           +++|+|++|+++.. ++.|.+
T Consensus       282 ~~~~~~~~~G~~Pr~~---------------------------~~s~~g~~l~Va~~~s~~v~v  318 (345)
T PF10282_consen  282 TLVQTVPTGGKFPRHF---------------------------AFSPDGRYLYVANQDSNTVSV  318 (345)
T ss_dssp             EEEEEEEESSSSEEEE---------------------------EE-TTSSEEEEEETTTTEEEE
T ss_pred             EEEEEEeCCCCCccEE---------------------------EEeCCCCEEEEEecCCCeEEE
Confidence              33333222334555                           88999999998874 556654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.38  E-value=3.7e-10  Score=99.02  Aligned_cols=249  Identities=12%  Similarity=0.084  Sum_probs=157.4

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC--------------
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--------------  172 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--------------  172 (456)
                      -.-++..++|||.|.+|++....| |.+|.......+..+. | ..|..+.|+|.+++|.+=+..+              
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            567899999999999999987664 9999988777665554 3 4589999999999999865433              


Q ss_pred             -eEEEEeCCCCCCccccccCcccc--eE-EEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-cCccEEEEE
Q 012799          173 -ELQCWDPQTGKPSGNPLSGHKKW--IT-GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-HTLAVTCVK  247 (456)
Q Consensus       173 -~i~vwd~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~  247 (456)
                       .+.+||+.+|..+.. +.....+  .+ -+.|+-     +..+.+-. ....++++++...-...-+.. ....|....
T Consensus       108 n~~~vwd~~sg~iv~s-f~~~~q~~~~Wp~~k~s~-----~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFs  180 (561)
T COG5354         108 NNVFVWDIASGMIVFS-FNGISQPYLGWPVLKFSI-----DDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFS  180 (561)
T ss_pred             CceeEEeccCceeEee-ccccCCcccccceeeeee-----cchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEE
Confidence             499999999987652 2222222  22 345554     55555544 345689999722111111111 135688888


Q ss_pred             eCCCC---eEEE-----EeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHh
Q 012799          248 WGGDG---VIYT-----GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (456)
Q Consensus       248 ~~~~~---~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (456)
                      |+|.+   .|+.     ....+++++|.+..+..+.+-.-....-..+.|.+.+.+...-.....+              
T Consensus       181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~k--------------  246 (561)
T COG5354         181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTK--------------  246 (561)
T ss_pred             ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeee--------------
Confidence            98864   4332     5567889999998777665544333334556666654332211100000              


Q ss_pred             hhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEE--EECCCcEEEEeCCCC
Q 012799          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS--ASFDKSIKLWNGTTG  392 (456)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s--~~~dg~i~iwd~~~~  392 (456)
                             ....+    -....++++++.....++..  ...++|...+|.|.++.+++  |-.+-.+.++|++..
T Consensus       247 -------snKsy----fgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         247 -------SNKSY----FGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             -------cccce----eccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeecccccc
Confidence                   00000    12346888887644433332  55789999999998877555  457788999998754

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=2.6e-11  Score=107.58  Aligned_cols=174  Identities=14%  Similarity=0.269  Sum_probs=134.4

Q ss_pred             EEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc----
Q 012799          113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP----  188 (456)
Q Consensus       113 ~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----  188 (456)
                      .++++.-..-|..++....|+-++++.|..+..+....+.++++..++-..+|++|+.+|.|..||.+....+...    
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~  217 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS  217 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence            3445433333444445557999999999999888888899999999999999999999999999999876644321    


Q ss_pred             -ccCccc-----ceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CcCccEEEEEeCCCC--eEEEEeC
Q 012799          189 -LSGHKK-----WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG--VIYTGSQ  259 (456)
Q Consensus       189 -~~~~~~-----~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~--~l~~~~~  259 (456)
                       ...|.+     .|+++.|..     +|-.+++|+.+|.+.|||+++.+++..-. +...+|..+.|.+.+  .-++...
T Consensus       218 ~v~s~pg~~~~~svTal~F~d-----~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D  292 (703)
T KOG2321|consen  218 SVNSHPGGDAAPSVTALKFRD-----DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD  292 (703)
T ss_pred             ccCCCccccccCcceEEEecC-----CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc
Confidence             222333     489999987     78899999999999999999998876542 345689999997753  4444555


Q ss_pred             CCcEEEEECCCCeEEEEeecCCcceEEEEecCc
Q 012799          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTE  292 (456)
Q Consensus       260 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  292 (456)
                      ...++|||-.+|+....+.. ...++.+++-|+
T Consensus       293 k~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~  324 (703)
T KOG2321|consen  293 KRILKIWDECTGKPMASIEP-TSDLNDFCFVPG  324 (703)
T ss_pred             hHHhhhcccccCCceeeccc-cCCcCceeeecC
Confidence            67899999999999888874 444888888887

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.37  E-value=9e-10  Score=101.26  Aligned_cols=229  Identities=14%  Similarity=0.081  Sum_probs=146.8

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI  199 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  199 (456)
                      +..+++++.+|.|..+|..+++.+...............  ++..++.++.+|.+..+|.++|+.......  ...+.  
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~--  138 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL--SSEVL--  138 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc--Cceee--
Confidence            567888888999999999999988776543322222222  567888889999999999999987653221  12221  


Q ss_pred             EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEE-----EEEeCCCCeEEEEeCCCcEEEEECCCCeEE
Q 012799          200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT-----CVKWGGDGVIYTGSQDCTIKVWETTQGKLI  274 (456)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  274 (456)
                       -.|..   .+..++.++.+|.++.||.++++.+...........     ..... ++.++.+..+|.+..+|.++|+.+
T Consensus       139 -~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~  213 (377)
T TIGR03300       139 -SPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPL  213 (377)
T ss_pred             -cCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEe
Confidence             11211   345777888899999999999998877654322111     11111 357788888999999999999876


Q ss_pred             EEeecCCc----ceE---EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecC
Q 012799          275 RELKGHGH----WVN---SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (456)
Q Consensus       275 ~~~~~~~~----~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  347 (456)
                      ........    .+.   .+.-+|                                  ...+..++.++.+|.++.||..
T Consensus       214 W~~~~~~~~g~~~~~~~~~~~~~p----------------------------------~~~~~~vy~~~~~g~l~a~d~~  259 (377)
T TIGR03300       214 WEQRVALPKGRTELERLVDVDGDP----------------------------------VVDGGQVYAVSYQGRVAALDLR  259 (377)
T ss_pred             eeeccccCCCCCchhhhhccCCcc----------------------------------EEECCEEEEEEcCCEEEEEECC
Confidence            54321100    000   000000                                  0014568888899999999987


Q ss_pred             CCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 012799          348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (456)
Q Consensus       348 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  398 (456)
                      +++.......  . .......  ++..++.++.||.+..+|..+|+.+...
T Consensus       260 tG~~~W~~~~--~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       260 SGRVLWKRDA--S-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             CCcEEEeecc--C-CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence            6653322211  1 1112222  4667888889999999999999887655

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.36  E-value=6.6e-09  Score=91.38  Aligned_cols=258  Identities=13%  Similarity=0.051  Sum_probs=155.7

Q ss_pred             CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCCCccccccCcc------
Q 012799          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK----------AGELQCWDPQTGKPSGNPLSGHK------  193 (456)
Q Consensus       130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~------  193 (456)
                      ++|.+.|..+++.+.++..-..+- .+ ++||++.|+++..          +..|.+||..+.+....+..+.+      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            789999999999888887444333 34 9999998887765          67899999999987754433211      


Q ss_pred             cceEEEEecccccCCCCCEEEEEe-C-CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCC
Q 012799          194 KWITGISWEPVHLNAPCRRFVSAS-K-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG  271 (456)
Q Consensus       194 ~~v~~~~~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~  271 (456)
                      .....++++|     +|+++++.. . +..|.+.|+.+++.+..+.-.. ...-...+++ .+.+-+.||......+...
T Consensus       105 ~~~~~~~ls~-----dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~-~~~~~~~Dg~~~~v~~d~~  177 (352)
T TIGR02658       105 TYPWMTSLTP-----DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAND-TFFMHCRDGSLAKVGYGTK  177 (352)
T ss_pred             CccceEEECC-----CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCC-ccEEEeecCceEEEEecCC
Confidence            1233667777     999888776 3 6899999999999888775421 1111222222 2223345555444333321


Q ss_pred             eEEEEeecCCcceEEEE-ecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC
Q 012799          272 KLIRELKGHGHWVNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK  350 (456)
Q Consensus       272 ~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  350 (456)
                      ....        ..... |..+...          .+            ........++.+++.... |.|.+.|+....
T Consensus       178 g~~~--------~~~~~vf~~~~~~----------v~------------~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~  226 (352)
T TIGR02658       178 GNPK--------IKPTEVFHPEDEY----------LI------------NHPAYSNKSGRLVWPTYT-GKIFQIDLSSGD  226 (352)
T ss_pred             CceE--------EeeeeeecCCccc----------cc------------cCCceEcCCCcEEEEecC-CeEEEEecCCCc
Confidence            1111        00100 1110000          00            000001113555666555 999999964432


Q ss_pred             C----Cccccc-------cccccEeEEEECCCCCEEEEEEC----------CCcEEEEeCCCCeEEEEEecccccEEEEE
Q 012799          351 Q----PKTRMT-------GHQQLVNHVYFSPDGQWVASASF----------DKSIKLWNGTTGKFVAVFRGHVGPVYQIR  409 (456)
Q Consensus       351 ~----~~~~~~-------~~~~~v~~~~~sp~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~  409 (456)
                      .    ....+.       -..+.+.-++++|+++.++....          .+.|.++|..+++.+..+.. ...+..+ 
T Consensus       227 ~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~i-  304 (352)
T TIGR02658       227 AKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSI-  304 (352)
T ss_pred             ceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeE-
Confidence            1    111111       12233445999999998887431          24799999999999998874 3467788 


Q ss_pred             eeeeeeecCCCCceeeecccccccceeEecCCC-eEEEee-CCCceEE
Q 012799          410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKV  455 (456)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s-~Dg~v~i  455 (456)
                                                +++|||+ +|++.. .++.|.|
T Consensus       305 --------------------------avS~Dgkp~lyvtn~~s~~VsV  326 (352)
T TIGR02658       305 --------------------------NVSQDAKPLLYALSTGDKTLYI  326 (352)
T ss_pred             --------------------------EECCCCCeEEEEeCCCCCcEEE
Confidence                                      8899999 777665 4666654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.36  E-value=1.6e-10  Score=94.25  Aligned_cols=244  Identities=18%  Similarity=0.192  Sum_probs=160.4

Q ss_pred             cccEEEEEECC---CCC-eEEEEECCCcEEEEeCCCCcceeEEecCC------CCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799          108 TEAVLSVAFSP---DGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHK------NWVLCIAWSADGKHLVSGSKAGELQCW  177 (456)
Q Consensus       108 ~~~V~~~~~s~---~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~dg~i~vw  177 (456)
                      +..+..+.|..   +|. .++-+..+|.|.++..........+.+-.      ....++.|++.+..++++-.+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            34456666653   344 56667788899999876544443333221      135678899999999999999998855


Q ss_pred             eCCCCCC-ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC-CCeEEEE-ecCcCccEEEEEeCCCC--
Q 012799          178 DPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVIC-LSGHTLAVTCVKWGGDG--  252 (456)
Q Consensus       178 d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~-~~~~~~~v~~~~~~~~~--  252 (456)
                      +...... .....+.|.-+.+...|+...    .+.+.+|+.|+.+..||++ .++.+.. .+.|...|.++.-+|..  
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~----pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~  224 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKE----PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT  224 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCC----CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence            5443322 123578899999999988743    3689999999999999999 4444444 56788999999998754  


Q ss_pred             eEEEEeCCCcEEEEECCC-CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799          253 VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (456)
                      .+++|+.|-.|++||.|+ ++++..-. -.+.|..+..+|...                                   ..
T Consensus       225 ~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~-----------------------------------~~  268 (339)
T KOG0280|consen  225 YIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIF-----------------------------------HR  268 (339)
T ss_pred             eEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhh-----------------------------------hH
Confidence            999999999999999994 56655544 346788888888621                                   11


Q ss_pred             EEEEeCCCcEEEEecCCCCC----CccccccccccEeEEEECCCCCEEEEEE-CCCcEE-EEeCCC
Q 012799          332 LVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIK-LWNGTT  391 (456)
Q Consensus       332 l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~-iwd~~~  391 (456)
                      ++.++.-.-.++-+......    .......|.+-+..-.|.....+|||++ .|+.++ +|-.-+
T Consensus       269 lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  269 LLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             HHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence            23333333344444332221    2233456666666666644445688865 455544 664433

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.32  E-value=9.8e-09  Score=102.75  Aligned_cols=301  Identities=17%  Similarity=0.194  Sum_probs=191.5

Q ss_pred             CCcccEEEEEECCCCCeEEEEECCCcEEEE----eCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLW----DLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ-  180 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~-  180 (456)
                      ...+.|.++.|-++...++.+..+|.|.+.    +..+.. +.....-...|.+++||||+..|+..+.++++.+..-. 
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            356789999999999999999999999999    444332 22223457789999999999999999999988776421 


Q ss_pred             ------------CC----------CCcc---------------c---------cccCcccceEEEEecccccCCCCCEEE
Q 012799          181 ------------TG----------KPSG---------------N---------PLSGHKKWITGISWEPVHLNAPCRRFV  214 (456)
Q Consensus       181 ------------~~----------~~~~---------------~---------~~~~~~~~v~~~~~~~~~~~~~~~~l~  214 (456)
                                  -|          +...               .         .+. ....-..++|..     ||.+||
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG-----DG~yFA  225 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG-----DGEYFA  225 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC-----CCcEEE
Confidence                        00          0000               0         001 233445677877     999999


Q ss_pred             EEeC---C---CcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCC----CcEEEEECCCCeEEEEee----cC
Q 012799          215 SASK---D---GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD----CTIKVWETTQGKLIRELK----GH  280 (456)
Q Consensus       215 ~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~----~~  280 (456)
                      +.+.   .   ..++||+-+ |....+-..-.+--.+++|.|.|.++++...    ..|.+|. ++|-.-..|.    ..
T Consensus       226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~  303 (928)
T PF04762_consen  226 VSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPE  303 (928)
T ss_pred             EEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCC
Confidence            8775   2   478999855 6554444444444567899999954444432    4577776 3444333332    34


Q ss_pred             CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC-Cccccc-c
Q 012799          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-PKTRMT-G  358 (456)
Q Consensus       281 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~  358 (456)
                      ...+..+.|+++                                    ++.|+....|. |.+|-..+-.- .++.+. .
T Consensus       304 ~~~v~~l~Wn~d------------------------------------s~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~  346 (928)
T PF04762_consen  304 EEKVIELAWNSD------------------------------------SEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS  346 (928)
T ss_pred             CceeeEEEECCC------------------------------------CCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc
Confidence            567899999998                                    44477666554 99998544321 111111 2


Q ss_pred             ccccEeEEEECCCC-CEEEEEECCCcEEEEeCC----CC--------eEEEEEecccccEEEEEeeeeeeecCCCCceee
Q 012799          359 HQQLVNHVYFSPDG-QWVASASFDKSIKLWNGT----TG--------KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV  425 (456)
Q Consensus       359 ~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~----~~--------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~  425 (456)
                      ....+..+.|+|.. ..|...+.+|.+..++..    .+        ..+.++.|..-.++.++.    ..--|....+.
T Consensus       347 ~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~----a~VPPPMs~~~  422 (928)
T PF04762_consen  347 SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRR----AVVPPPMSSYE  422 (928)
T ss_pred             CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccc----cCCCchHhceE
Confidence            23335559999954 447777777777666532    11        123444443333333311    11123445555


Q ss_pred             ecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          426 VDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       426 ~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ...+..+..++|++++..+++-..||.|.+|
T Consensus       423 l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~  453 (928)
T PF04762_consen  423 LELPSPVNDVAFSPSNSRFAVLTSDGSLSIY  453 (928)
T ss_pred             EcCCCCcEEEEEeCCCCeEEEEECCCCEEEE
Confidence            6667788888999999889999999998875

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.32  E-value=1.6e-08  Score=88.38  Aligned_cols=122  Identities=17%  Similarity=0.287  Sum_probs=91.8

Q ss_pred             cCccEEEEEeCCCC-eEEEEeCCC-cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799          239 HTLAVTCVKWGGDG-VIYTGSQDC-TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (456)
Q Consensus       239 ~~~~v~~~~~~~~~-~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (456)
                      +...|.-..+..++ .++.|..|| .+-+||.++++. +.+...-+.|.++..+++                        
T Consensus       358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~d------------------------  412 (668)
T COG4946         358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPD------------------------  412 (668)
T ss_pred             CCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCC------------------------
Confidence            33445444444444 677888888 899999987764 445556778999999988                        


Q ss_pred             HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCC----cEEEEeCCCC
Q 012799          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK----SIKLWNGTTG  392 (456)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg----~i~iwd~~~~  392 (456)
                                  +.+++.+.....+.+.|+.++.... .-+...+-|+..+|+|+++++|-+--+|    .|+++|+..+
T Consensus       413 ------------GK~~vvaNdr~el~vididngnv~~-idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         413 ------------GKKVVVANDRFELWVIDIDNGNVRL-IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             ------------CcEEEEEcCceEEEEEEecCCCeeE-ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence                        6668999999999999988765433 2345567899999999999999887665    6999999888


Q ss_pred             eEEEEE
Q 012799          393 KFVAVF  398 (456)
Q Consensus       393 ~~~~~~  398 (456)
                      +....-
T Consensus       480 Kiy~vT  485 (668)
T COG4946         480 KIYDVT  485 (668)
T ss_pred             eEEEec
Confidence            765443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.30  E-value=8e-12  Score=124.35  Aligned_cols=210  Identities=14%  Similarity=0.244  Sum_probs=155.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CcCc
Q 012799          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTL  241 (456)
Q Consensus       163 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~  241 (456)
                      +.+.....++...-|..+.+..   ....+-..|.++.-+|     ...+.++|+.||.+++|.-..++.+..+. ....
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~~~---~~k~~v~~v~r~~sHp-----~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASV---MIKHPVENVRRMTSHP-----SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred             ccCCcccCCccccceeccccee---EeecccCceeeecCCC-----CCceEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence            3444444455555554443322   2334445677777777     55689999999999999998888877663 2348


Q ss_pred             cEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799          242 AVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (456)
Q Consensus       242 ~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (456)
                      .|+.+.|+.+| .+..+..||.+.+|... .++....+.|......+.|-..                            
T Consensus      2253 ~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s---------------------------- 2303 (2439)
T KOG1064|consen 2253 RVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGS---------------------------- 2303 (2439)
T ss_pred             hhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeeeh----------------------------
Confidence            89999999998 89999999999999987 5566666667666665555432                            


Q ss_pred             hhhccCCCCCEEEEE---eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE
Q 012799          321 YNKIKGNAPERLVSG---SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV  397 (456)
Q Consensus       321 ~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  397 (456)
                                .++++   +.++.+.+||.............|.+.++++++-|..++|++||.+|.|++||++..+++..
T Consensus      2304 ----------~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~ 2373 (2439)
T KOG1064|consen 2304 ----------LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHT 2373 (2439)
T ss_pred             ----------hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHH
Confidence                      13333   45788999996555444444488999999999999999999999999999999998887766


Q ss_pred             EecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       398 ~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ++                                    ++. ...++++|+..|.++||
T Consensus      2374 ~~------------------------------------~~~-~~~~f~~~ss~g~ikIw 2395 (2439)
T KOG1064|consen 2374 FQ------------------------------------ALD-TREYFVTGSSEGNIKIW 2395 (2439)
T ss_pred             hh------------------------------------hhh-hhheeeccCcccceEEE
Confidence            65                                    234 45789999999999998

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=1.8e-09  Score=95.96  Aligned_cols=146  Identities=16%  Similarity=0.243  Sum_probs=100.1

Q ss_pred             CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-e--EEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceee
Q 012799          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-V--IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (456)
Q Consensus       220 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  296 (456)
                      .+++++++....+...+. ..++|.++.|++++ .  ++.|-.-..+.+||++ +.++..+  ..++=+++-|+|.    
T Consensus       251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~----  322 (566)
T KOG2315|consen  251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPH----  322 (566)
T ss_pred             ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCC----
Confidence            368888887555554443 47899999999999 3  4446667889999987 4555555  3456678888887    


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC---CCcEEEEecCCCCCCccccccccccEeEEEECCCCC
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ  373 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~  373 (456)
                                                      +++++.++-   .|.+-+||..+ .+.+..+...  .-+-+.|+|||+
T Consensus       323 --------------------------------g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~--~tt~~eW~PdGe  367 (566)
T KOG2315|consen  323 --------------------------------GNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAA--NTTVFEWSPDGE  367 (566)
T ss_pred             --------------------------------CCEEEEeecCCCCCceEEEeccc-hhhccccccC--CceEEEEcCCCc
Confidence                                            444555443   58899999776 4444444432  345679999999


Q ss_pred             EEEEEEC------CCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799          374 WVASASF------DKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       374 ~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      +++|++.      |+.++||+. +|.++....-.. ..+.+.|
T Consensus       368 ~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W  408 (566)
T KOG2315|consen  368 YFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-ELLQVEW  408 (566)
T ss_pred             EEEEEeccccEEecCCeEEEEe-cCceeehhhhhH-hHhheee
Confidence            9998864      678999996 577665433221 4555544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.28  E-value=1.4e-08  Score=89.45  Aligned_cols=236  Identities=14%  Similarity=0.126  Sum_probs=140.9

Q ss_pred             ECCCCCeEEEEEC----------CCcEEEEeCCCCcceeEEecCC-------CCEEEEEEcCCCCEEEEEeC--CCeEEE
Q 012799          116 FSPDGRQLASGSG----------DTTVRLWDLNTQTPMFKCTGHK-------NWVLCIAWSADGKHLVSGSK--AGELQC  176 (456)
Q Consensus       116 ~s~~~~~l~~~~~----------d~~v~vwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~s~~~--dg~i~v  176 (456)
                      ++|||+.|+.+..          +..|.+||..+.+.+..+.--.       .....++++|||++|++...  +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998877655          6799999999999988876322       23347899999999998763  688999


Q ss_pred             EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-CeE-EEE---ecCcCccEEE-EEeCC
Q 012799          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKC-VIC---LSGHTLAVTC-VKWGG  250 (456)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~~---~~~~~~~v~~-~~~~~  250 (456)
                      .|+.+++.+.....+-...+  ....+       ..+.+-+.||......+.. ++. ...   +.....++.. -.+.+
T Consensus       133 vD~~~~kvv~ei~vp~~~~v--y~t~e-------~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~  203 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHI--FPTAN-------DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN  203 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEE--EEecC-------CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc
Confidence            99999987653332111111  11111       1122223344443333221 111 111   1110000000 02344


Q ss_pred             -CC-eEEEEeCCCcEEEEECCCCe-----EEEEeec-------CCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799          251 -DG-VIYTGSQDCTIKVWETTQGK-----LIRELKG-------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (456)
Q Consensus       251 -~~-~l~~~~~dg~i~iwd~~~~~-----~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (456)
                       +| .+++... |+|.+.|+....     ....+..       ......-++++++                        
T Consensus       204 ~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d------------------------  258 (352)
T TIGR02658       204 KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA------------------------  258 (352)
T ss_pred             CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC------------------------
Confidence             66 5555544 999999965432     2222211       1122334666666                        


Q ss_pred             HHhhhhhccCCCCCEEEEEe----------CCCcEEEEecCCCCCCccccccccccEeEEEECCCCC-EEEEEE-CCCcE
Q 012799          317 ALERYNKIKGNAPERLVSGS----------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS-FDKSI  384 (456)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~-~dg~i  384 (456)
                                  +++++...          ..+.|.++|..+.+.......+  ..+..++++||++ +|++.. .++.|
T Consensus       259 ------------g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~V  324 (352)
T TIGR02658       259 ------------RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTL  324 (352)
T ss_pred             ------------CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcE
Confidence                        34455422          2247999997666544443444  3689999999999 777655 67889


Q ss_pred             EEEeCCCCeEEEEEe
Q 012799          385 KLWNGTTGKFVAVFR  399 (456)
Q Consensus       385 ~iwd~~~~~~~~~~~  399 (456)
                      .++|..+++.+..+.
T Consensus       325 sViD~~t~k~i~~i~  339 (352)
T TIGR02658       325 YIFDAETGKELSSVN  339 (352)
T ss_pred             EEEECcCCeEEeeec
Confidence            999999999998873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.27  E-value=7.1e-09  Score=95.70  Aligned_cols=261  Identities=11%  Similarity=0.066  Sum_probs=158.5

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI  199 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  199 (456)
                      +..++.++.+|.+..+|.++|+.+.+.............  .+..++.++.+|.+..+|.++|+................
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            456777888999999999999988776533221111111  245677788899999999999987653222110000000


Q ss_pred             EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc-------cEEEEEeCC---CCeEEEEeCCCcEEEEECC
Q 012799          200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-------AVTCVKWGG---DGVIYTGSQDCTIKVWETT  269 (456)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~---~~~l~~~~~dg~i~iwd~~  269 (456)
                      .-+|..   .+..++.++.+|.+..+|..+++.+........       ....+..+|   ++.+++++.+|.+..+|..
T Consensus       198 ~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~  274 (394)
T PRK11138        198 ESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR  274 (394)
T ss_pred             CCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence            012211   234577788899999999998887655431100       011111122   4578888889999999999


Q ss_pred             CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC
Q 012799          270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS  349 (456)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  349 (456)
                      +|+.+.......  ...+..                                      .+..++.++.+|.+..+|..++
T Consensus       275 tG~~~W~~~~~~--~~~~~~--------------------------------------~~~~vy~~~~~g~l~ald~~tG  314 (394)
T PRK11138        275 SGQIVWKREYGS--VNDFAV--------------------------------------DGGRIYLVDQNDRVYALDTRGG  314 (394)
T ss_pred             CCCEEEeecCCC--ccCcEE--------------------------------------ECCEEEEEcCCCeEEEEECCCC
Confidence            998766543211  001111                                      1456888889999999998766


Q ss_pred             CCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeeccc
Q 012799          350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS  429 (456)
Q Consensus       350 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~  429 (456)
                      ...............+...  .+.+|+.++.||.+.+.|..+|+.+...+.....+.+-.                    
T Consensus       315 ~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P--------------------  372 (394)
T PRK11138        315 VELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEP--------------------  372 (394)
T ss_pred             cEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCC--------------------
Confidence            5433221111111122222  255788899999999999999999887764333332210                    


Q ss_pred             ccccceeEecCCCeEEEeeCCCceEE
Q 012799          430 CCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       430 ~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                            ..  .+..|+.++.||.|+.
T Consensus       373 ------~~--~~~~l~v~t~~G~l~~  390 (394)
T PRK11138        373 ------VV--ADDKLLIQARDGTVYA  390 (394)
T ss_pred             ------EE--ECCEEEEEeCCceEEE
Confidence                  12  2457888899998864

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.26  E-value=3.9e-09  Score=85.21  Aligned_cols=224  Identities=10%  Similarity=0.006  Sum_probs=142.9

Q ss_pred             CCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEe
Q 012799          129 DTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSA-----DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISW  201 (456)
Q Consensus       129 d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~  201 (456)
                      ...+-+|+.-+..  .+...       +.+.|.|     ...+||.|+..|...+|.+.+.+........|...|+-+.-
T Consensus        51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r  123 (344)
T KOG4532|consen   51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR  123 (344)
T ss_pred             eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence            3456677765433  11211       3344544     44589999999999999998776544333334333321110


Q ss_pred             cccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCC-eEEEE--e
Q 012799          202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG-KLIRE--L  277 (456)
Q Consensus       202 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~--~  277 (456)
                      .    ......+..++.|.++++.+++-+..........-.+.++++++++ .+++.+....|..|.+... +.+..  .
T Consensus       124 ~----cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~  199 (344)
T KOG4532|consen  124 Y----CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE  199 (344)
T ss_pred             h----cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe
Confidence            0    0022356778888888888876554333332222348889999999 7777788888999988653 22222  1


Q ss_pred             ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc--
Q 012799          278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR--  355 (456)
Q Consensus       278 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--  355 (456)
                      ......-.+.+|+..                                    ...++++..||++.|||++....+...  
T Consensus       200 a~t~D~gF~~S~s~~------------------------------------~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s  243 (344)
T KOG4532|consen  200 APTSDHGFYNSFSEN------------------------------------DLQFAVVFQDGTCAIYDVRNMATPMAEIS  243 (344)
T ss_pred             cccCCCceeeeeccC------------------------------------cceEEEEecCCcEEEEEecccccchhhhc
Confidence            222233344555554                                    456999999999999999877655432  


Q ss_pred             --cccccccEeEEEECCCCCE--EEEEECCCcEEEEeCCCCeEEEEEe
Q 012799          356 --MTGHQQLVNHVYFSPDGQW--VASASFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       356 --~~~~~~~v~~~~~sp~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~  399 (456)
                        -..|.+.++.+.|++-|.+  |+..-.-+.+.+.|+++++..+.+.
T Consensus       244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence              2458899999999986653  5555556789999999987766554

>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO)

Probab=99.25  E-value=4.3e-11  Score=77.03  Aligned_cols=62  Identities=34%  Similarity=0.599  Sum_probs=57.9

Q ss_pred             eEEEEEECCCC--CCCCCcEEeeCCCCHHHHHHHHHHhh-cCCCCCceeEEecCeeeeechhhhH
Q 012799           10 NVMCLLTDPEG--NPLGAPMYFPQNAGPQQLSQIVNKLL-NNEEKLPYAFYISDHELLVPLGSYL   71 (456)
Q Consensus        10 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~   71 (456)
                      +|+|.|.++.+  ..++.|+.+|.+.++.+|+.++|+|+ ..++++||+|++++.+++.+|++++
T Consensus         1 qv~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~lr~sL~~~l   65 (65)
T PF08154_consen    1 QVQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEELRTSLEEHL   65 (65)
T ss_pred             CEEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEEeechHHHhC
Confidence            58999998876  89999999999999999999999999 8889999999999999999998764

It is found in the microtubule-associated protein Q12024 from SWISSPROT [].

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=1.7e-09  Score=99.74  Aligned_cols=106  Identities=19%  Similarity=0.210  Sum_probs=80.7

Q ss_pred             ccccccccCCcccEEEEEECCCC------------CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC---CC
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDG------------RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA---DG  162 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~------------~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~  162 (456)
                      -+.++.+..|...|+.+.|.|-.            -+||++...|.|.+||...+..+..+..|.+++..++|-+   +.
T Consensus        45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S  124 (1062)
T KOG1912|consen   45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS  124 (1062)
T ss_pred             hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc
Confidence            34567788899999999998731            2577888889999999999988888999999999999987   33


Q ss_pred             -CEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEeccc
Q 012799          163 -KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV  204 (456)
Q Consensus       163 -~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  204 (456)
                       ..|++-.....+.+|+..+|+...+...+ .....++.+.|.
T Consensus       125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-~~iLs~f~~DPf  166 (1062)
T KOG1912|consen  125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-HEILSCFRVDPF  166 (1062)
T ss_pred             hheeEEecCCcEEEEEEccCCceeeccccC-CcceeeeeeCCC
Confidence             46666677789999999999876532222 233445666663

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.22  E-value=5.1e-08  Score=97.73  Aligned_cols=271  Identities=17%  Similarity=0.238  Sum_probs=153.1

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCC---------------C--------CcceeEEec---------------
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN---------------T--------QTPMFKCTG---------------  148 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~---------------~--------~~~~~~~~~---------------  148 (456)
                      -...|.+++||||+.+||..+.++++.+-+-+               .        |+....+.|               
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~  198 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV  198 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence            36689999999999999999999988886421               0        111111110               


Q ss_pred             ---------CCCCEEEEEEcCCCCEEEEEeC---C---CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEE
Q 012799          149 ---------HKNWVLCIAWSADGKHLVSGSK---A---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF  213 (456)
Q Consensus       149 ---------~~~~v~~~~~~~~~~~l~s~~~---d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l  213 (456)
                               +...-..++|..||.++|+.+.   .   ..++||+-+ |.... ....-.+--.+++|.|     .|+.+
T Consensus       199 ~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~s-tSE~v~gLe~~l~WrP-----sG~lI  271 (928)
T PF04762_consen  199 PKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQS-TSEPVDGLEGALSWRP-----SGNLI  271 (928)
T ss_pred             CccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEe-ccccCCCccCCccCCC-----CCCEE
Confidence                     2335567899999999998764   2   479999976 54332 2223333445789999     89999


Q ss_pred             EEEeC---CCcEEEEECCC---CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeE--EEEeec-CCcc
Q 012799          214 VSASK---DGDARIWDVSL---RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL--IRELKG-HGHW  283 (456)
Q Consensus       214 ~~~~~---dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~--~~~~~~-~~~~  283 (456)
                      ++...   ...|.+|.-+.   ++....+......|..+.|++++ .|+....| .|.+|-..+..-  .+.+.. ....
T Consensus       272 A~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~  350 (928)
T PF04762_consen  272 ASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSES  350 (928)
T ss_pred             EEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCC
Confidence            88765   34566776432   22222222456789999999999 55555544 499999887653  223322 2233


Q ss_pred             eEEEEecCcceeeeccccCCCCc--cCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC--Ccc-cccc
Q 012799          284 VNSLALSTEYALRTGAFDHTGKQ--YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--PKT-RMTG  358 (456)
Q Consensus       284 i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~-~~~~  358 (456)
                      +..+.|+|............+..  +...-.      ........+...-++..-+...+.+-.++....  +.. ....
T Consensus       351 ~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~------v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~  424 (928)
T PF04762_consen  351 VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD------VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE  424 (928)
T ss_pred             CCceEECCCCCCEEEEEecCCcEEEEEEEEE------EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc
Confidence            45588888643221111110000  000000      000000000011111111222333333332221  111 1112


Q ss_pred             ccccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799          359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (456)
Q Consensus       359 ~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  391 (456)
                      -..+|.+++|++++..+++-..||.+.+|....
T Consensus       425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence            356799999999988899999999999998544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.22  E-value=3.4e-10  Score=96.42  Aligned_cols=162  Identities=17%  Similarity=0.299  Sum_probs=120.1

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce---eEEecCCCCEEEEEEcCCCCEEEEE---eCCCeEEEEeCCCCC
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM---FKCTGHKNWVLCIAWSADGKHLVSG---SKAGELQCWDPQTGK  183 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~---~~dg~i~vwd~~~~~  183 (456)
                      .+..+..++.+++||.+..+....++++......   .....-...-+++.|..+......+   +....+.+|....+.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            4455667888899998888888777777654331   1111223334555555555555444   344556666666544


Q ss_pred             CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCcCccEEEEEeCCCCeEEEEeCCCc
Q 012799          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAVTCVKWGGDGVIYTGSQDCT  262 (456)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~  262 (456)
                      ..  ...+|-..+++++|+|     |+++++++..|..|++-....-..+..+ .||..-|..++..++..|++++.|++
T Consensus       144 ~~--~~lGhvSml~dVavS~-----D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~t  216 (390)
T KOG3914|consen  144 CE--PILGHVSMLLDVAVSP-----DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKT  216 (390)
T ss_pred             cc--hhhhhhhhhheeeecC-----CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCc
Confidence            43  6889999999999999     8899999999999999887766555555 57999999999998889999999999


Q ss_pred             EEEEECCCCeEEEEee
Q 012799          263 IKVWETTQGKLIRELK  278 (456)
Q Consensus       263 i~iwd~~~~~~~~~~~  278 (456)
                      +++||+++|+.+.++.
T Consensus       217 lr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  217 LRLWDITSGKLLDTCD  232 (390)
T ss_pred             EEEEecccCCcccccc
Confidence            9999999999886664

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.21  E-value=2.4e-08  Score=102.00  Aligned_cols=262  Identities=13%  Similarity=0.120  Sum_probs=151.5

Q ss_pred             EEEEECCC-CCeEEEEECCCcEEEEeCCCCcceeEEec--------------CCCCEEEEEEcCCCCEEEEEeC-CCeEE
Q 012799          112 LSVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKCTG--------------HKNWVLCIAWSADGKHLVSGSK-AGELQ  175 (456)
Q Consensus       112 ~~~~~s~~-~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~s~~~-dg~i~  175 (456)
                      ..++++++ ++++++-+.++.|++||... ..+..+.+              .-.....+++.++++.|+++.. .+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788874 56677767788999999764 43333322              1123678999998887666544 56799


Q ss_pred             EEeCCCCCCcccc--------ccCc-------ccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC--
Q 012799          176 CWDPQTGKPSGNP--------LSGH-------KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--  238 (456)
Q Consensus       176 vwd~~~~~~~~~~--------~~~~-------~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--  238 (456)
                      ++|+.++......        ..+.       -..-..++++|.    ++..+++.+.++.|++||..++.... +.+  
T Consensus       650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~----~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G  724 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV----NEKVYIAMAGQHQIWEYNISDGVTRV-FSGDG  724 (1057)
T ss_pred             EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC----CCeEEEEECCCCeEEEEECCCCeEEE-EecCC
Confidence            9998765432100        0000       112346777762    34566666778899999987765432 111  


Q ss_pred             -------------cCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCC
Q 012799          239 -------------HTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT  303 (456)
Q Consensus       239 -------------~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  303 (456)
                                   .-.....++++|++  .+++-+.++.|++||+.++.......+  .++.     +......+..+..
T Consensus       725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg--~~~~-----~~~l~~fG~~dG~  797 (1057)
T PLN02919        725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG--DPTF-----SDNLFKFGDHDGV  797 (1057)
T ss_pred             ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec--cccc-----CcccccccCCCCc
Confidence                         01234679999987  444555678999999987653211110  0000     0000000000000


Q ss_pred             CCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc------------cccccccEeEEEECCC
Q 012799          304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR------------MTGHQQLVNHVYFSPD  371 (456)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------~~~~~~~v~~~~~sp~  371 (456)
                      .        ..............++++.+++-..++.|++||..+.......            ..+.-.....++++++
T Consensus       798 g--------~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d  869 (1057)
T PLN02919        798 G--------SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN  869 (1057)
T ss_pred             h--------hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence            0        0000000011112344667888888999999997543211100            1112235778999999


Q ss_pred             CCEEEEEECCCcEEEEeCCCCeE
Q 012799          372 GQWVASASFDKSIKLWNGTTGKF  394 (456)
Q Consensus       372 ~~~l~s~~~dg~i~iwd~~~~~~  394 (456)
                      |+++++-+.++.|++||+.+++.
T Consensus       870 G~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        870 GRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCEEEEECCCCEEEEEECCCCcc
Confidence            99999888999999999988765

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=8.7e-10  Score=100.73  Aligned_cols=233  Identities=14%  Similarity=0.244  Sum_probs=154.5

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--------------ccccccCcccceEEEEecccccCCCCCEEE
Q 012799          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--------------SGNPLSGHKKWITGISWEPVHLNAPCRRFV  214 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  214 (456)
                      ......|++|+....+++.|+.||.+++..+.+...              ..+.+.+|...|.-+.|..     +.+.|-
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-----~~QKLT   87 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-----NNQKLT   87 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-----cccccc
Confidence            445678999999999999999999999998765321              2235779999999999988     778899


Q ss_pred             EEeCCCcEEEEECCCCeEEEEe--cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecC
Q 012799          215 SASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST  291 (456)
Q Consensus       215 ~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  291 (456)
                      +...+|.|.+|-+-.++-...+  ...++.|.+++|..+| .+.....||.|.+=.+...+. .--.........+.|++
T Consensus        88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg~~l~hv~ws~  166 (1189)
T KOG2041|consen   88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELKGQLLAHVLWSE  166 (1189)
T ss_pred             ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcchheccceeecc
Confidence            9999999999988766532222  2345678999999999 888889999888766654322 11111122234567777


Q ss_pred             cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc----------cccccc
Q 012799          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR----------MTGHQQ  361 (456)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------~~~~~~  361 (456)
                      +.                                    +.++.+-.+|.+.+||....-.....          +.....
T Consensus       167 D~------------------------------------~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~  210 (1189)
T KOG2041|consen  167 DL------------------------------------EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPT  210 (1189)
T ss_pred             cH------------------------------------HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCc
Confidence            73                                    33566667788888884332111100          000111


Q ss_pred             cEeEEEEC--------CCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeeccccccc
Q 012799          362 LVNHVYFS--------PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS  433 (456)
Q Consensus       362 ~v~~~~~s--------p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~  433 (456)
                      .|..+.|.        ||...|+.+-..|.+.|-.-.+......+.. .-.+...                         
T Consensus       211 kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt-gm~~vga-------------------------  264 (1189)
T KOG2041|consen  211 KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT-GMKIVGA-------------------------  264 (1189)
T ss_pred             cccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec-ccEeecc-------------------------
Confidence            13344442        4777888888888888875443322222221 1344555                         


Q ss_pred             ceeEecCCCeEEEeeCCC
Q 012799          434 LYSWSADSRLLLSGSKDS  451 (456)
Q Consensus       434 ~~~~s~dg~~l~s~s~Dg  451 (456)
                        .|+++|..|+.+|.|.
T Consensus       265 --kWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  265 --KWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             --eecCCCcEEEEccCcc
Confidence              8999999999988753

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.17  E-value=7.4e-08  Score=79.20  Aligned_cols=247  Identities=17%  Similarity=0.180  Sum_probs=138.0

Q ss_pred             EEECCCCCeEEEEECCCcEEEEeCCCC--cceeEEec---CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc--
Q 012799          114 VAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTG---HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG--  186 (456)
Q Consensus       114 ~~~s~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--  186 (456)
                      ++.+.+|++||.- .|..|.|-..+..  ..+.+.+-   ..-.=..++|+||+.+||.+...|+|+++|+.......  
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~   81 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP   81 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence            5678899988876 5667777655432  22222222   22234689999999999999999999999997543211  


Q ss_pred             ---ccccCcccceEEEEecccccCCC-CCEEEEEeCCCcEEEEECCC-----CeEEEEe--c-CcCccEEEEEeCCCC-e
Q 012799          187 ---NPLSGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSL-----RKCVICL--S-GHTLAVTCVKWGGDG-V  253 (456)
Q Consensus       187 ---~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~-----~~~~~~~--~-~~~~~v~~~~~~~~~-~  253 (456)
                         .........|..+.|.+...+.. ...|++-..+|.++-|-+..     .+....+  . .+...|.++.++|.. .
T Consensus        82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L  161 (282)
T PF15492_consen   82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL  161 (282)
T ss_pred             cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence               01112235677777876543222 23577777788888776532     2222332  2 246789999999987 5


Q ss_pred             EEEEeC-CCcEEEEECCCCeEEEEeecCCcceEEEEe---cCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799          254 IYTGSQ-DCTIKVWETTQGKLIRELKGHGHWVNSLAL---STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (456)
Q Consensus       254 l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (456)
                      |++|+. ...-..+.           .....+++-.+   .|.+..... .                           +.
T Consensus       162 LlVgG~~~~~~~~s~-----------a~~~GLtaWRiL~~~Pyyk~v~~-~---------------------------~~  202 (282)
T PF15492_consen  162 LLVGGCEQNQDGMSK-----------ASSCGLTAWRILSDSPYYKQVTS-S---------------------------ED  202 (282)
T ss_pred             EEEeccCCCCCcccc-----------ccccCceEEEEcCCCCcEEEccc-c---------------------------Cc
Confidence            555544 32100000           00111111111   111110000 0                           00


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccccc
Q 012799          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP  404 (456)
Q Consensus       330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  404 (456)
                      +.-......   .+|.+... ............|..|..||||++||+...+|.|.+|++.+.++......+..|
T Consensus       203 ~~~~~~~~~---~~~~~~~~-~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP  273 (282)
T PF15492_consen  203 DITASSKRR---GLLRIPSF-KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP  273 (282)
T ss_pred             ccccccccc---ceeeccce-eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence            000011111   12221110 011111234567999999999999999999999999999998887776654443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.16  E-value=1.9e-09  Score=88.83  Aligned_cols=241  Identities=18%  Similarity=0.314  Sum_probs=158.2

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-----ceeEEecCC------------CCEEEEEEcCCC--CEEEE
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHK------------NWVLCIAWSADG--KHLVS  167 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~s  167 (456)
                      ..+.|+++.|...|.+|++|...|.|.+|.-+...     ....+++|.            ..|..+.|..++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            35679999999999999999988999999755432     122344553            357888887643  36777


Q ss_pred             EeCCCeEEEEeCCCCCCc-------------------c----------------------c-cccCcccceEEEEecccc
Q 012799          168 GSKAGELQCWDPQTGKPS-------------------G----------------------N-PLSGHKKWITGISWEPVH  205 (456)
Q Consensus       168 ~~~dg~i~vwd~~~~~~~-------------------~----------------------~-~~~~~~~~v~~~~~~~~~  205 (456)
                      .+.|.+|++|.+......                   .                      + ....|...+.++.+..  
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns--  182 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS--  182 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC--
Confidence            788999999988644100                   0                      0 0123444455555544  


Q ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCe---EEEEecCcC-----ccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEE
Q 012799          206 LNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHT-----LAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIR  275 (456)
Q Consensus       206 ~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~-----~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~  275 (456)
                         +...++++ .|=.|.+|+++...   .+..++.|.     .-|++..|+|..  .+.-.+..|.|++-|++......
T Consensus       183 ---D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd  258 (460)
T COG5170         183 ---DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD  258 (460)
T ss_pred             ---chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence               55666554 45789999886432   233344443     358888999966  77778889999999998543211


Q ss_pred             ----Ee------------ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799          276 ----EL------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (456)
Q Consensus       276 ----~~------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  339 (456)
                          .+            ..-...|..+.|+++                                    +.+++ +..=-
T Consensus       259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~n------------------------------------gryIl-sRdyl  301 (460)
T COG5170         259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDN------------------------------------GRYIL-SRDYL  301 (460)
T ss_pred             CchhhhhhccCcccchhHHHHhhhhcceEEcCC------------------------------------CcEEE-Eeccc
Confidence                01            111234555566655                                    33344 34456


Q ss_pred             cEEEEecCCCCCCccccccccc------------cE---eEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          340 TMFLWEPAVSKQPKTRMTGHQQ------------LV---NHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~------------~v---~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                      ++++||.+..+.++..+.-|..            .|   ..+.||.|.+.+.+|+..+..-+|-..
T Consensus       302 tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         302 TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence            8999999888877776644432            22   357889999999999999888888643

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.15  E-value=2.4e-07  Score=78.61  Aligned_cols=256  Identities=14%  Similarity=0.147  Sum_probs=157.8

Q ss_pred             CCcEEEEeCCCCcc---eeEEecCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCC--CCCcccc-ccCcccceEEE
Q 012799          129 DTTVRLWDLNTQTP---MFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQT--GKPSGNP-LSGHKKWITGI  199 (456)
Q Consensus       129 d~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~--~~~~~~~-~~~~~~~v~~~  199 (456)
                      +.-|++|++.+..-   ...+-.....++-|+|+|++++|.++..+   |.|..|.++.  |+....- ......+-..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            45699999884321   12223567788999999999999988655   6677777664  4432110 11111223677


Q ss_pred             EecccccCCCCCEEEEEeC-CCcEEEEECCC-CeEEE--EecCcCcc----------EEEEEeCCCC-eEEEEeC-CCcE
Q 012799          200 SWEPVHLNAPCRRFVSASK-DGDARIWDVSL-RKCVI--CLSGHTLA----------VTCVKWGGDG-VIYTGSQ-DCTI  263 (456)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~-~l~~~~~-dg~i  263 (456)
                      +.++     ++++++++.. .|.|.++-++. |....  ....|.+.          +....+.|++ ++++... --.|
T Consensus        95 svd~-----~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri  169 (346)
T COG2706          95 SVDE-----DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRI  169 (346)
T ss_pred             EECC-----CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceE
Confidence            7777     8888888765 57899998854 32211  12224333          7888899999 5555443 2369


Q ss_pred             EEEECCCCeEEEEe---ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799          264 KVWETTQGKLIREL---KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (456)
Q Consensus       264 ~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  340 (456)
                      .+|++..|+....-   -..+..-+-|.|+|++.+.                                   .+..--+++
T Consensus       170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~a-----------------------------------Y~v~EL~st  214 (346)
T COG2706         170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYA-----------------------------------YLVNELNST  214 (346)
T ss_pred             EEEEcccCccccccccccCCCCCcceEEEcCCCcEE-----------------------------------EEEeccCCE
Confidence            99999977653221   1345567889999985442                                   333445788


Q ss_pred             EEEEecCCCCCCccccc---------cccccEeEEEECCCCCEEEEEEC-CCcEEEEeCCC--CeEEE--EEecccccEE
Q 012799          341 MFLWEPAVSKQPKTRMT---------GHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTT--GKFVA--VFRGHVGPVY  406 (456)
Q Consensus       341 i~iwd~~~~~~~~~~~~---------~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~--~~~~~--~~~~~~~~v~  406 (456)
                      |.+|...........+.         ........+.++|||++|.++.. ...|-+|.+..  +++..  ....+...-.
T Consensus       215 V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR  294 (346)
T COG2706         215 VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPR  294 (346)
T ss_pred             EEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCc
Confidence            88888665422111111         12346778999999999988642 23677776654  33211  1111211122


Q ss_pred             EEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC
Q 012799          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS  451 (456)
Q Consensus       407 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg  451 (456)
                      ..                           .+++.|++|+++..|+
T Consensus       295 ~F---------------------------~i~~~g~~Liaa~q~s  312 (346)
T COG2706         295 DF---------------------------NINPSGRFLIAANQKS  312 (346)
T ss_pred             cc---------------------------eeCCCCCEEEEEccCC
Confidence            22                           7899999999998764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.15  E-value=3.3e-07  Score=80.36  Aligned_cols=140  Identities=19%  Similarity=0.206  Sum_probs=114.1

Q ss_pred             cCCcccEEEEEECCCCCeEEEEECCC-cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 012799          105 AGHTEAVLSVAFSPDGRQLASGSGDT-TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~~l~~~~~d~-~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  183 (456)
                      -+|.+.|.-..+.-+++-++.|..|| .+-|+|.++++ ...+...-+.|.++..+++|++++.+.....+.+.|+++|+
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            36888899999999988999999999 89999998766 44556677889999999999999999999999999999998


Q ss_pred             CccccccCcccceEEEEecccccCCCCCEEEEEeCCC----cEEEEECCCCeEEEEecCcCccEEEEEeCCCC
Q 012799          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG----DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG  252 (456)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  252 (456)
                      ... .-....+-|+...|+|     +++.+|.+--+|    .|+++|+..++...... ..+.=.+-+|.|++
T Consensus       435 v~~-idkS~~~lItdf~~~~-----nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~  500 (668)
T COG4946         435 VRL-IDKSEYGLITDFDWHP-----NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDG  500 (668)
T ss_pred             eeE-ecccccceeEEEEEcC-----CceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCC
Confidence            654 4556678899999999     889999887665    68999999887655433 23333456788888

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.14  E-value=4.7e-09  Score=86.56  Aligned_cols=215  Identities=15%  Similarity=0.279  Sum_probs=140.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC-cc---ccccCcc------------cceEEEEecccccCCCCCE
Q 012799          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SG---NPLSGHK------------KWITGISWEPVHLNAPCRR  212 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~---~~~~~~~------------~~v~~~~~~~~~~~~~~~~  212 (456)
                      ....|+++.|...|.||++|...|.|.+|.-+.... ..   +.+++|.            ..|..+.|....   .-..
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t---~r~h  101 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT---GRNH  101 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC---Ccce
Confidence            456789999999999999999999999997654331 11   1123332            346677776522   3457


Q ss_pred             EEEEeCCCcEEEEECCCCeE------------------------------------------EEEe-cCcCccEEEEEeC
Q 012799          213 FVSASKDGDARIWDVSLRKC------------------------------------------VICL-SGHTLAVTCVKWG  249 (456)
Q Consensus       213 l~~~~~dg~i~iwd~~~~~~------------------------------------------~~~~-~~~~~~v~~~~~~  249 (456)
                      ++..+.|.+|++|.+.....                                          .+.. ..|.-.|.++.+.
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N  181 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN  181 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence            88889999999998643200                                          0011 3466678889998


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCeE---EEEeecCC-----cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799          250 GDGVIYTGSQDCTIKVWETTQGKL---IRELKGHG-----HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (456)
Q Consensus       250 ~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (456)
                      .+...+..+.|=.|.+|++.-...   +..++.|.     ..|++..|+|..                            
T Consensus       182 sD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~----------------------------  233 (460)
T COG5170         182 SDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM----------------------------  233 (460)
T ss_pred             CchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH----------------------------
Confidence            888555567778899999864321   12222221     234555555542                            


Q ss_pred             hhccCCCCCEEEEEeCCCcEEEEecCCCCCCc-----c----------ccccccccEeEEEECCCCCEEEEEECCCcEEE
Q 012799          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK-----T----------RMTGHQQLVNHVYFSPDGQWVASASFDKSIKL  386 (456)
Q Consensus       322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~----------~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i  386 (456)
                             .+.+..++..|.|++-|++......     .          .+.+-...|..+.|+++|+++++-+. -+|+|
T Consensus       234 -------cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvki  305 (460)
T COG5170         234 -------CNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKI  305 (460)
T ss_pred             -------cceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEE
Confidence                   4457788899999999988543211     1          11222346889999999999988654 57999


Q ss_pred             EeCCC-CeEEEEEeccc
Q 012799          387 WNGTT-GKFVAVFRGHV  402 (456)
Q Consensus       387 wd~~~-~~~~~~~~~~~  402 (456)
                      ||++. ..++.++.-|.
T Consensus       306 wDvnm~k~pikTi~~h~  322 (460)
T COG5170         306 WDVNMAKNPIKTIPMHC  322 (460)
T ss_pred             EecccccCCceeechHH
Confidence            99986 45577765554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.13  E-value=1.1e-06  Score=74.82  Aligned_cols=252  Identities=14%  Similarity=0.201  Sum_probs=160.1

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEEC---CCcEEEEeCCC--Cccee--EEecCCCCEEEEEEcCCCCEEEEEeC-CCeEE
Q 012799          104 IAGHTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNT--QTPMF--KCTGHKNWVLCIAWSADGKHLVSGSK-AGELQ  175 (456)
Q Consensus       104 l~~h~~~V~~~~~s~~~~~l~~~~~---d~~v~vwd~~~--~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~  175 (456)
                      +-.+.+.++-++|+|+++.|.++-.   +|.|..|.++.  |+...  .......+.+.+++++++++++++.. .|.|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            4457788899999999999988854   57788888775  33221  11122334488999999999998876 57899


Q ss_pred             EEeCCC-CCCccc-cccCcccc----------eEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEEEe---cCc
Q 012799          176 CWDPQT-GKPSGN-PLSGHKKW----------ITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICL---SGH  239 (456)
Q Consensus       176 vwd~~~-~~~~~~-~~~~~~~~----------v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~---~~~  239 (456)
                      ++-++. |..... ....|.+.          +....+.|     +++++++.+. --.|.+|++..++....-   -..
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-----~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~  189 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-----DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP  189 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-----CCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence            999865 332211 12223333          56667777     8889888765 236999999876543221   133


Q ss_pred             CccEEEEEeCCCC-e-EEEEeCCCcEEEEECCCC-eEEEEeec---------CCcceEEEEecCcceeeeccccCCCCcc
Q 012799          240 TLAVTCVKWGGDG-V-IYTGSQDCTIKVWETTQG-KLIRELKG---------HGHWVNSLALSTEYALRTGAFDHTGKQY  307 (456)
Q Consensus       240 ~~~v~~~~~~~~~-~-l~~~~~dg~i~iwd~~~~-~~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~  307 (456)
                      ...-+.|.|+|++ . .++.-.+++|.+|..... ..+..++.         ...+...|.+++++              
T Consensus       190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG--------------  255 (346)
T COG2706         190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG--------------  255 (346)
T ss_pred             CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC--------------
Confidence            4567899999999 3 344566899999998763 22222221         22345667777774              


Q ss_pred             CChHHHHHHHHhhhhhccCCCCCEEEEEeC-CCcEEEEecCCCCCCcc---ccccccccEeEEEECCCCCEEEEEECCC-
Q 012799          308 SSPEEMKKAALERYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKT---RMTGHQQLVNHVYFSPDGQWVASASFDK-  382 (456)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~s~~~dg-  382 (456)
                                            ++|.++.. ...|.+|.+......+.   ....+....+...|+|+|++|+++..++ 
T Consensus       256 ----------------------rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd  313 (346)
T COG2706         256 ----------------------RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD  313 (346)
T ss_pred             ----------------------CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC
Confidence                                  43444322 23566666554433222   1223334478899999999988887664 


Q ss_pred             cEEEEeC--CCCeEEE
Q 012799          383 SIKLWNG--TTGKFVA  396 (456)
Q Consensus       383 ~i~iwd~--~~~~~~~  396 (456)
                      .|.+|.+  .+|++-.
T Consensus       314 ~i~vf~~d~~TG~L~~  329 (346)
T COG2706         314 NITVFERDKETGRLTL  329 (346)
T ss_pred             cEEEEEEcCCCceEEe
Confidence            6777754  4566543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.11  E-value=1.2e-07  Score=81.18  Aligned_cols=225  Identities=16%  Similarity=0.068  Sum_probs=138.5

Q ss_pred             CCcEEEEeCCCCcceeEEecC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEeccccc
Q 012799          129 DTTVRLWDLNTQTPMFKCTGH--KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (456)
Q Consensus       129 d~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  206 (456)
                      +|+|..||..+++.+....-.  .....+. ..+++..+++++.++.+..||..+|+.............. ...     
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~-----   74 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVV-----   74 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEE-----
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eee-----
Confidence            688999999999988877531  1222211 2236667888889999999999999865432221110011 111     


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCcC-----ccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecC
Q 012799          207 NAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHT-----LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGH  280 (456)
Q Consensus       207 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~-----~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  280 (456)
                        .+..+++++.++.++.+|..+++.+... ....     .......+. .+.++++..++.|..+|+++|+.+......
T Consensus        75 --~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~  151 (238)
T PF13360_consen   75 --DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVG  151 (238)
T ss_dssp             --ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred             --cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence              4567777888899999999999998874 3221     111222222 337888888999999999999998887653


Q ss_pred             Ccce-EEEE-ecCc-ceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc
Q 012799          281 GHWV-NSLA-LSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT  357 (456)
Q Consensus       281 ~~~i-~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  357 (456)
                      .... ..+. +... ...                             .. .+..++.+..++.+..+|+.++.... ...
T Consensus       152 ~~~~~~~~~~~~~~~~~~-----------------------------~~-~~~~v~~~~~~g~~~~~d~~tg~~~w-~~~  200 (238)
T PF13360_consen  152 EPRGSSPISSFSDINGSP-----------------------------VI-SDGRVYVSSGDGRVVAVDLATGEKLW-SKP  200 (238)
T ss_dssp             TT-SS--EEEETTEEEEE-----------------------------EC-CTTEEEEECCTSSEEEEETTTTEEEE-EEC
T ss_pred             CCCCCcceeeecccccce-----------------------------EE-ECCEEEEEcCCCeEEEEECCCCCEEE-Eec
Confidence            3221 1110 0000 000                             00 02257777777764444877766332 222


Q ss_pred             cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE
Q 012799          358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV  397 (456)
Q Consensus       358 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  397 (456)
                        ...+..+ ...++..|+.++.++.+..||+++|+.+.+
T Consensus       201 --~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  201 --ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             --SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             --CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence              1222221 345677888888999999999999998654

...

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.10  E-value=1.7e-08  Score=93.44  Aligned_cols=242  Identities=14%  Similarity=0.169  Sum_probs=167.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEeccccc-----C--CCCCEEEEEeCCCcE
Q 012799          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL-----N--APCRRFVSASKDGDA  222 (456)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~--~~~~~l~~~~~dg~i  222 (456)
                      ...-.++.|+|.| +||.|+. ..|.+-|..+-+.+. .+..|...|+.+.|.|...     +  ...-.++++.-.|.|
T Consensus        15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq-sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ-SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             cccccccccCccc-eEEEecC-ceEEEEehhhhhhhh-ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            3345678899877 6677664 478999988887765 6778899999999998432     1  133467788889999


Q ss_pred             EEEECCCCeEEEEecCcCccEEEEEeCCC---C--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeee
Q 012799          223 RIWDVSLRKCVICLSGHTLAVTCVKWGGD---G--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT  297 (456)
Q Consensus       223 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  297 (456)
                      .+||...+..+..+..|..++..++|-+.   .  .|++-....++.+|+..+|+.+...........++.+.|-.    
T Consensus        92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd----  167 (1062)
T KOG1912|consen   92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD----  167 (1062)
T ss_pred             EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCC----
Confidence            99999999988889999999999999762   2  67777888899999999999998888777777778877752    


Q ss_pred             ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC------Cccccccccc----------
Q 012799          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ------PKTRMTGHQQ----------  361 (456)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~----------  361 (456)
                                                     ...+..-+..|.+.+-+.....+      ..+....|.+          
T Consensus       168 -------------------------------~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at  216 (1062)
T KOG1912|consen  168 -------------------------------SRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETAT  216 (1062)
T ss_pred             -------------------------------cceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhc
Confidence                                           23344444444444443221110      0000011111          


Q ss_pred             ---------------cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeee
Q 012799          362 ---------------LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV  426 (456)
Q Consensus       362 ---------------~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~  426 (456)
                                     ....++|+|.-+-++.......+.++|++-..++.+..-..+.+.-+                  
T Consensus       217 ~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv------------------  278 (1062)
T KOG1912|consen  217 GNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFV------------------  278 (1062)
T ss_pred             cccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCccee------------------
Confidence                           01235778876555555567789999998888777766444433333                  


Q ss_pred             cccccccceeEecCC--CeEEEeeCCCceEEC
Q 012799          427 DMSCCMSLYSWSADS--RLLLSGSKDSTLKVT  456 (456)
Q Consensus       427 ~~~~~~~~~~~s~dg--~~l~s~s~Dg~v~iW  456 (456)
                               .|-|++  ..|+..-.||.+-||
T Consensus       279 ---------~vlP~~~rd~LfclH~nG~ltir  301 (1062)
T KOG1912|consen  279 ---------DVLPDPRRDALFCLHSNGRLTIR  301 (1062)
T ss_pred             ---------EeccCCCcceEEEEecCCeEEEE
Confidence                     556665  478999999999887

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.09  E-value=5.3e-09  Score=84.09  Aligned_cols=195  Identities=15%  Similarity=0.166  Sum_probs=116.4

Q ss_pred             EEEEEECCCCCeEEEEECCCcEEEEeCCCCc------------ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQT------------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (456)
Q Consensus       111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  178 (456)
                      |+.+.++.+. .|+++..++.+..+....+.            +.+.+.-|..+-.+-+.+-.++.++++..||.+.+.+
T Consensus        39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            5555565443 46666666555554433222            2222333333333333333567899999999999999


Q ss_pred             CCCCCCccccc-cCcccceEEEEecccccCCCCCEEEEEeC-----CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC
Q 012799          179 PQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASK-----DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG  252 (456)
Q Consensus       179 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  252 (456)
                      .+.-....... ..|.+ -.+.++..     .++.+.+++-     -+..+.|+++..+....-+.....|++++-+|..
T Consensus       118 ~~~~~~~~~~i~~~~~~-~as~~~~~-----~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~q  191 (319)
T KOG4714|consen  118 TDKDLALMSRIPSIHSG-SASRKICR-----HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQ  191 (319)
T ss_pred             chHHHhhhhhccccccc-ccccceee-----cccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCccc
Confidence            87622211111 11111 11111111     2333333321     2345666666544333322333458999998855


Q ss_pred             --eEEEEeCCCcEEEEECCCCeE-EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799          253 --VIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (456)
Q Consensus       253 --~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (456)
                        .+++|+.||.+.+||.+.... ...+..|..++..+-|+|.                                   ++
T Consensus       192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk-----------------------------------~p  236 (319)
T KOG4714|consen  192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK-----------------------------------NP  236 (319)
T ss_pred             ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC-----------------------------------Cc
Confidence              888899999999999998743 3445779999999999997                                   36


Q ss_pred             CEEEEEeCCCcEEEEecC
Q 012799          330 ERLVSGSDDFTMFLWEPA  347 (456)
Q Consensus       330 ~~l~~~~~dg~i~iwd~~  347 (456)
                      +.|+++++||.+..||..
T Consensus       237 ~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  237 EHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             hheeEecCCCcEEEEcCC
Confidence            779999999999999944

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.09  E-value=6.9e-07  Score=76.80  Aligned_cols=207  Identities=17%  Similarity=0.181  Sum_probs=135.7

Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE
Q 012799          154 LCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC  232 (456)
Q Consensus       154 ~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  232 (456)
                      .++.|.+ ++.++++--..+.|..|+..++.........    ...+.+..     .+..++.+..++ +.++|..+++.
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~-----~~g~l~v~~~~~-~~~~d~~~g~~   72 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDR-----PDGRLYVADSGG-IAVVDPDTGKV   72 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEEC-----TTSEEEEEETTC-EEEEETTTTEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEc-----cCCEEEEEEcCc-eEEEecCCCcE
Confidence            3678888 6667777667899999999887654311111    56667663     224566666544 55669988865


Q ss_pred             EEEecC-----cCccEEEEEeCCCCeEEEEeC-C--------CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeec
Q 012799          233 VICLSG-----HTLAVTCVKWGGDGVIYTGSQ-D--------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG  298 (456)
Q Consensus       233 ~~~~~~-----~~~~v~~~~~~~~~~l~~~~~-d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  298 (456)
                      ......     .....+.+++.++|.++.+.. .        |.|..++.. ++...... .-...+.++++|++.    
T Consensus        73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~----  146 (246)
T PF08450_consen   73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGK----  146 (246)
T ss_dssp             EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSS----
T ss_pred             EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcch----
Confidence            443332     346688999999995554433 2        557778877 55433333 345568899999832    


Q ss_pred             cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCc---c---ccccccccEeEEEECCCC
Q 012799          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK---T---RMTGHQQLVNHVYFSPDG  372 (456)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~---~~~~~~~~v~~~~~sp~~  372 (456)
                                                     .++++-+..+.|..+++.......   .   .+....+..-.+++..+|
T Consensus       147 -------------------------------~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G  195 (246)
T PF08450_consen  147 -------------------------------TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG  195 (246)
T ss_dssp             -------------------------------EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred             -------------------------------heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence                                           124567778889999976444311   1   112222347889999999


Q ss_pred             CEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          373 QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       373 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      ++.++....+.|.+++.. |+++..+......++++
T Consensus       196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~  230 (246)
T PF08450_consen  196 NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNC  230 (246)
T ss_dssp             -EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred             CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence            988888889999999976 99988888666678888

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=3.6e-07  Score=84.10  Aligned_cols=223  Identities=14%  Similarity=0.113  Sum_probs=129.9

Q ss_pred             CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCE-EEEEeCC---CeEEEEeCCCCCCccccccCcccceEEEEecccc
Q 012799          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH  205 (456)
Q Consensus       130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  205 (456)
                      ..|.+-|.+... ...+... +......|+|||+. ++..+.+   ..|.++|+.+++...  +....+......|+|  
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--lt~~~g~~~~~~~SP--  242 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--IASSQGMLVVSDVSK--  242 (419)
T ss_pred             ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--EecCCCcEEeeEECC--
Confidence            356665655443 3333323 37889999999985 6654443   469999998887543  333455566778998  


Q ss_pred             cCCCCCEEEEEe-C--CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CCC--cEEEEECCCCeEEEEee
Q 012799          206 LNAPCRRFVSAS-K--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDC--TIKVWETTQGKLIRELK  278 (456)
Q Consensus       206 ~~~~~~~l~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg--~i~iwd~~~~~~~~~~~  278 (456)
                         ||+.++... .  +..|+++|+.+++.. .+..+........|+|+| .++..+ ..+  .|.+.|+.+++..+...
T Consensus       243 ---DG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~  318 (419)
T PRK04043        243 ---DGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF  318 (419)
T ss_pred             ---CCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence               888776543 2  356888898777643 343333334456899999 444433 333  58888888776644332


Q ss_pred             cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC---------CcEEEEecCCC
Q 012799          279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD---------FTMFLWEPAVS  349 (456)
Q Consensus       279 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~  349 (456)
                      . ...  ...|+|++                                    +.++.....         ..|.+.|+..+
T Consensus       319 ~-g~~--~~~~SPDG------------------------------------~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g  359 (419)
T PRK04043        319 H-GKN--NSSVSTYK------------------------------------NYIVYSSRETNNEFGKNTFNLYLISTNSD  359 (419)
T ss_pred             C-CCc--CceECCCC------------------------------------CEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence            1 111  24788874                                    334443332         36778886655


Q ss_pred             CCCccccccccccEeEEEECCCCCEEEEEECCC---cEEEEeCCCCeEEEEEecccccE
Q 012799          350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPV  405 (456)
Q Consensus       350 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v  405 (456)
                      ..  ..+... .......|+|||+.|+..+.++   .+.+.++. |.....+....+.+
T Consensus       360 ~~--~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~  414 (419)
T PRK04043        360 YI--RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKI  414 (419)
T ss_pred             Ce--EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCcc
Confidence            32  222222 2233578999999877765432   36666764 43333344333333

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.07  E-value=1.3e-07  Score=96.74  Aligned_cols=245  Identities=14%  Similarity=0.110  Sum_probs=143.8

Q ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCcccccc-C------------cccceEEEEecccccCCCCCEEEEEe-C
Q 012799          154 LCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSGNPLS-G------------HKKWITGISWEPVHLNAPCRRFVSAS-K  218 (456)
Q Consensus       154 ~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~------------~~~~v~~~~~~~~~~~~~~~~l~~~~-~  218 (456)
                      ..++++++ +.++++-+.++.|++||.... .....-. +            .-.....+++.+     +++.|+++. .
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-----~gn~LYVaDt~  644 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-----KKNLLYVADTE  644 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeC-----CCCEEEEEeCC
Confidence            46788874 556667677888999997643 2211111 0            112246677766     666665554 4


Q ss_pred             CCcEEEEECCCCeEEEEecCc-----------------CccEEEEEeCC-CC-eEEEEeCCCcEEEEECCCCeEEEEeec
Q 012799          219 DGDARIWDVSLRKCVICLSGH-----------------TLAVTCVKWGG-DG-VIYTGSQDCTIKVWETTQGKLIRELKG  279 (456)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~  279 (456)
                      .+.|+.+|..++.. .++.+.                 -.....++++| ++ .+++.+.++.|++||..++... .+.+
T Consensus       645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G  722 (1057)
T PLN02919        645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG  722 (1057)
T ss_pred             CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence            56799999877653 222110                 11235789998 45 5566667889999999876542 2221


Q ss_pred             CC---------------cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCC-EEEEEeCCCcEEE
Q 012799          280 HG---------------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-RLVSGSDDFTMFL  343 (456)
Q Consensus       280 ~~---------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i  343 (456)
                      ..               .....++++|+                                    ++ .+++.+.++.|++
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspd------------------------------------G~~LYVADs~n~~Irv  766 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPD------------------------------------LKELYIADSESSSIRA  766 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCC------------------------------------CCEEEEEECCCCeEEE
Confidence            11               11223444443                                    44 4566677899999


Q ss_pred             EecCCCCCCcc------------cccc--------ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc
Q 012799          344 WEPAVSKQPKT------------RMTG--------HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG  403 (456)
Q Consensus       344 wd~~~~~~~~~------------~~~~--------~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  403 (456)
                      ||+.++.....            .+..        .-.....++++++|+++++-+.+++|++||..++...... +...
T Consensus       767 ~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G~  845 (1057)
T PLN02919        767 LDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTGK  845 (1057)
T ss_pred             EECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccCC
Confidence            99765432110            0000        0113468899999999888889999999999877654322 2110


Q ss_pred             cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       404 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .-    |        .... .....-.....++++++|+.+++-+.+++|++|
T Consensus       846 ~G----~--------~dG~-~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        846 AG----F--------KDGK-ALKAQLSEPAGLALGENGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             cC----C--------CCCc-ccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence            00    0        0000 000000112233889999999999999999986

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.06  E-value=1.6e-09  Score=99.46  Aligned_cols=251  Identities=16%  Similarity=0.208  Sum_probs=162.8

Q ss_pred             EEEEEECCCC--CeEEEEECCCcEEEEeCCC---CcceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCC
Q 012799          111 VLSVAFSPDG--RQLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKP  184 (456)
Q Consensus       111 V~~~~~s~~~--~~l~~~~~d~~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~  184 (456)
                      |-...|+|..  .+-++......-.+|++..   ......+.+|...|+.+.|+|+ ...+++++-|-.+..||+++...
T Consensus        70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~  149 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR  149 (1081)
T ss_pred             hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence            5566777643  3444444444567888753   3345667899999999999985 46889999999999999988765


Q ss_pred             ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCCC--CeEEEEeCCC
Q 012799          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGD--GVIYTGSQDC  261 (456)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg  261 (456)
                      .......-......++|+-     ....+++.+....|.+||.+.+ .++..+++|...|..++|..-  +.+++++.||
T Consensus       150 p~ys~~~w~s~asqVkwny-----k~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~  224 (1081)
T KOG0309|consen  150 PFYSTSSWRSAASQVKWNY-----KDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDG  224 (1081)
T ss_pred             ceeeeecccccCceeeecc-----cCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCC
Confidence            4333444445567788876     3345566666788999999865 567788889999999998763  3899999999


Q ss_pred             cEEEEECCCCeEEEE-eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799          262 TIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (456)
Q Consensus       262 ~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  340 (456)
                      +|+.||......... ......+|..-.+-|-+.-.....                         ...++.+.--..+..
T Consensus       225 tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp-------------------------~~G~n~v~~~~c~n~  279 (1081)
T KOG0309|consen  225 TVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMP-------------------------MVGGNMVPQLRCENS  279 (1081)
T ss_pred             ceeeecccccccccceeccccCcceeccccccCceeEecc-------------------------ccCCeeeeeccccch
Confidence            999999875432211 111223333333333211000000                         000111111222333


Q ss_pred             EEEEecCCCCCCccccccccccEeEEEECCCC----------CEEEEEECCCcEEEEeCCC
Q 012799          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG----------QWVASASFDKSIKLWNGTT  391 (456)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~----------~~l~s~~~dg~i~iwd~~~  391 (456)
                      ...|+..+...++..+.||...|....|-..+          -.|+|-+.|..+++|-+.+
T Consensus       280 d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  280 DLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             hhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            44566556667888899999988766554322          2499999999999998754

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=4.4e-08  Score=87.28  Aligned_cols=258  Identities=16%  Similarity=0.166  Sum_probs=157.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-----------CCc
Q 012799          153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-----------DGD  221 (456)
Q Consensus       153 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-----------dg~  221 (456)
                      -+-+.|||.|.||++--..| |.+|--.+-....  ...| ..|.-+.|+|     +.++|++-+.           ...
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~--RF~H-p~Vq~idfSP-----~EkYLVT~s~~p~~~~~~d~e~~~  283 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ--RFYH-PGVQFIDFSP-----NEKYLVTYSPEPIIVEEDDNEGQQ  283 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHH--hccC-CCceeeecCC-----ccceEEEecCCccccCcccCCCce
Confidence            46789999999999987765 8899655444333  1223 3478889999     7889998653           257


Q ss_pred             EEEEECCCCeEEEEecCcC--c-cEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeec
Q 012799          222 ARIWDVSLRKCVICLSGHT--L-AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG  298 (456)
Q Consensus       222 i~iwd~~~~~~~~~~~~~~--~-~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  298 (456)
                      +.|||+.+|.....+....  . .-.-..|+.|+..++.-....|.||+..+-.++..-...-..|....|+|...+++.
T Consensus       284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence            9999999999887775422  2 223467898885555555577999998765444333334456788888888655443


Q ss_pred             cccCCCCc--------cCChHHHHHHHHhh---hhhccCCCCCEEEEEe----------CCCcEEEEecCCCCCCccccc
Q 012799          299 AFDHTGKQ--------YSSPEEMKKAALER---YNKIKGNAPERLVSGS----------DDFTMFLWEPAVSKQPKTRMT  357 (456)
Q Consensus       299 ~~~~~~~~--------~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~  357 (456)
                      ........        ...........+..   ....+...+++|+.--          .-..+.|+.++....++... 
T Consensus       364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-  442 (698)
T KOG2314|consen  364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-  442 (698)
T ss_pred             EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-
Confidence            32221111        00000111111111   1112445566666432          12245666666655555433 


Q ss_pred             cccccEeEEEECCCCCEEEEEEC---CCcEEEEeCCC-C---eEEEEEecccccEEEEEeeeeeeecCCCCceeeecccc
Q 012799          358 GHQQLVNHVYFSPDGQWVASASF---DKSIKLWNGTT-G---KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSC  430 (456)
Q Consensus       358 ~~~~~v~~~~~sp~~~~l~s~~~---dg~i~iwd~~~-~---~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~  430 (456)
                      .-...|...+|-|.|+.+++-+.   ..++.+|.+++ .   +++..+..  ...+.+                      
T Consensus       443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~v----------------------  498 (698)
T KOG2314|consen  443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTV----------------------  498 (698)
T ss_pred             ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceE----------------------
Confidence            34567889999999998776543   25788888773 2   22333332  234445                      


Q ss_pred             cccceeEecCCCeEEEeeC
Q 012799          431 CMSLYSWSADSRLLLSGSK  449 (456)
Q Consensus       431 ~~~~~~~s~dg~~l~s~s~  449 (456)
                           .|+|.|++++.+..
T Consensus       499 -----fwsPkG~fvvva~l  512 (698)
T KOG2314|consen  499 -----FWSPKGRFVVVAAL  512 (698)
T ss_pred             -----EEcCCCcEEEEEEe
Confidence                 89999999887753

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.03  E-value=9.3e-10  Score=97.66  Aligned_cols=212  Identities=19%  Similarity=0.318  Sum_probs=146.3

Q ss_pred             eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-C-----ccccccCcccceEEEEecccccCCCCCEEEEE
Q 012799          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-P-----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSA  216 (456)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~  216 (456)
                      +..+.+|...|..++--.+.+.+++++.|.+|++|.++... .     ....+..|+.+|.++.|..     +-+++  +
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-----~lr~i--~  800 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-----DLRSI--A  800 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-----cccee--e
Confidence            34567899999988877788899999999999999987432 1     1235678999999999877     44444  5


Q ss_pred             eCCCcEEEEECCCCeEEEEec-----CcCccEEEEEeCCCCeEEEE-eCCCcEEEEECCCCeEEEEee-----cCCcceE
Q 012799          217 SKDGDARIWDVSLRKCVICLS-----GHTLAVTCVKWGGDGVIYTG-SQDCTIKVWETTQGKLIRELK-----GHGHWVN  285 (456)
Q Consensus       217 ~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~  285 (456)
                      +.||.|.+||.-.++.+..+.     +..+.|.|+.--....++++ +...+|+++|.+.++....++     +.+..+.
T Consensus       801 ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  801 SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence            668999999987666654332     12233444432222244444 778999999999987666554     3445577


Q ss_pred             EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeE
Q 012799          286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH  365 (456)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  365 (456)
                      ++++.+.                                    ++.++++-.+|.|.+.|.+++.. +......+.....
T Consensus       881 ~iaVa~~------------------------------------GN~lAa~LSnGci~~LDaR~G~v-INswrpmecdllq  923 (1034)
T KOG4190|consen  881 AIAVADK------------------------------------GNKLAAALSNGCIAILDARNGKV-INSWRPMECDLLQ  923 (1034)
T ss_pred             EEEeccC------------------------------------cchhhHHhcCCcEEEEecCCCce-eccCCcccchhhh
Confidence            7887776                                    66799999999999999777652 2223333333333


Q ss_pred             EEECCCCCEEEEEECCCcEEE-EeCCCCeEEEEEe
Q 012799          366 VYFSPDGQWVASASFDKSIKL-WNGTTGKFVAVFR  399 (456)
Q Consensus       366 ~~~sp~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~  399 (456)
                      ++ .|..+.|+....|.++.+ |...+|....+.+
T Consensus       924 la-apsdq~L~~saldHslaVnWhaldgimh~q~k  957 (1034)
T KOG4190|consen  924 LA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK  957 (1034)
T ss_pred             hc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence            33 355667887778888888 8877776655544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=3.4e-07  Score=84.25  Aligned_cols=171  Identities=12%  Similarity=0.052  Sum_probs=109.3

Q ss_pred             cEEEEEECCCCCe-EEEEEC---CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCC--CeEEEEeCCCC
Q 012799          110 AVLSVAFSPDGRQ-LASGSG---DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKA--GELQCWDPQTG  182 (456)
Q Consensus       110 ~V~~~~~s~~~~~-l~~~~~---d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d--g~i~vwd~~~~  182 (456)
                      .+....|+|||+. ++..+.   +..|+++|+.+++..... ...+......|+|||+.++.. +.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            7789999999985 665443   346899999887654433 355667778999999877654 333  46888888777


Q ss_pred             CCccccccCcccceEEEEecccccCCCCCEEEEEeCC-C--cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-G--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (456)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~  258 (456)
                      +...  +..+........|+|     ||+.++..+.. +  .|+++|+.+++....... ...  ...|+|+| .++...
T Consensus       268 ~~~~--LT~~~~~d~~p~~SP-----DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~  337 (419)
T PRK04043        268 TLTQ--ITNYPGIDVNGNFVE-----DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSS  337 (419)
T ss_pred             cEEE--cccCCCccCccEECC-----CCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEE
Confidence            6432  333333334567888     89888777642 3  688888887765433321 111  24899999 454443


Q ss_pred             CC---------CcEEEEECCCCeEEEEeecCCcceEEEEecCcc
Q 012799          259 QD---------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEY  293 (456)
Q Consensus       259 ~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~  293 (456)
                      ..         ..|.+.|+.++.. +.+... .......|+|++
T Consensus       338 ~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG  379 (419)
T PRK04043        338 RETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDG  379 (419)
T ss_pred             cCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCC
Confidence            32         3688889887764 333322 223356777773

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.01  E-value=6.5e-08  Score=78.33  Aligned_cols=200  Identities=16%  Similarity=0.075  Sum_probs=131.9

Q ss_pred             CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCcCccEEEEEe
Q 012799          170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKW  248 (456)
Q Consensus       170 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~  248 (456)
                      ....+-+|+..+.....      ..--..+.|.|..+-....+|+.||..|...+|...+.+.... ...|...|+-+.-
T Consensus        50 ~t~sv~i~~~y~N~~~i------v~~y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r  123 (344)
T KOG4532|consen   50 KTISVPINSHYSNPKGI------VEFYTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR  123 (344)
T ss_pred             ceeeeEeccccCCchhh------EEeeecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence            34457777776544111      1112567788877666778999999999999999986554332 2333333322221


Q ss_pred             CCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799          249 GGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (456)
Q Consensus       249 ~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (456)
                      ..+.  .+..++.|.++++.++.-+..........-.+.+++++++                                  
T Consensus       124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd----------------------------------  169 (344)
T KOG4532|consen  124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSND----------------------------------  169 (344)
T ss_pred             hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCC----------------------------------
Confidence            1122  6777889999999888755433333222233778888887                                  


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCccc--cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEE-----EEe
Q 012799          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA-----VFR  399 (456)
Q Consensus       327 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~  399 (456)
                        +.++++.+....|..|.+.....-...  .......=.+..|+.....+|++..||++.|||++......     +-.
T Consensus       170 --~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp  247 (344)
T KOG4532|consen  170 --PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRP  247 (344)
T ss_pred             --CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCC
Confidence              555888889999999987765543322  22333445677899988999999999999999998754322     234


Q ss_pred             cccccEEEEEee
Q 012799          400 GHVGPVYQIRFE  411 (456)
Q Consensus       400 ~~~~~v~~i~~~  411 (456)
                      .|.+.+..+.|.
T Consensus       248 ~hnGa~R~c~Fs  259 (344)
T KOG4532|consen  248 HHNGAFRVCRFS  259 (344)
T ss_pred             CCCCceEEEEec
Confidence            688899998664

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.00  E-value=8.2e-09  Score=88.23  Aligned_cols=153  Identities=14%  Similarity=0.224  Sum_probs=105.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeE----EEEec--CcCccEEEEEeCCCCeEE-EEeCCCcEEEEECCCCeEEEEeecCC
Q 012799          209 PCRRFVSASKDGDARIWDVSLRKC----VICLS--GHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHG  281 (456)
Q Consensus       209 ~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~--~~~~~v~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~  281 (456)
                      ++++++.+..+....+++......    .....  .....++.+..+....++ .++....+.+|....+ ....+-+|-
T Consensus        73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-~~~~~lGhv  151 (390)
T KOG3914|consen   73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-RCEPILGHV  151 (390)
T ss_pred             CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-Ccchhhhhh
Confidence            777888888877777777654332    22221  112223333333222222 2333445666665553 334455688


Q ss_pred             cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccc
Q 012799          282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ  361 (456)
Q Consensus       282 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  361 (456)
                      +.+..++++|+                                    +++++++..|..|++-.............||..
T Consensus       152 Sml~dVavS~D------------------------------------~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e  195 (390)
T KOG3914|consen  152 SMLLDVAVSPD------------------------------------DQFIITADRDEKIRVSRYPATFVIESFCLGHKE  195 (390)
T ss_pred             hhhheeeecCC------------------------------------CCEEEEecCCceEEEEecCcccchhhhccccHh
Confidence            99999999998                                    677999999999999887666555566678999


Q ss_pred             cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       362 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  399 (456)
                      -|..++.-++ ..|++||.|+++++||+.+|+.+.++.
T Consensus       196 FVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  196 FVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             heeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence            9999999765 458999999999999999999886654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.98  E-value=1.1e-09  Score=63.58  Aligned_cols=38  Identities=53%  Similarity=0.995  Sum_probs=35.7

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEe
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD  136 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd  136 (456)
                      ++.+++++|.+.|++++|+|++++|++|+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45678999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.95  E-value=3.8e-09  Score=84.90  Aligned_cols=163  Identities=13%  Similarity=0.172  Sum_probs=104.5

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce-eEEecCCCCEEEEEEcCCCCEEEEEeC-----CCeEEE
Q 012799          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSADGKHLVSGSK-----AGELQC  176 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~v  176 (456)
                      .+..|+++=.+-+.+-.++.++++..||.+.+++.+.-..+ ..+......-.+.+....++.+.++..     -+..+.
T Consensus        84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a  163 (319)
T KOG4714|consen   84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYA  163 (319)
T ss_pred             eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceee
Confidence            33445555444455556778999999999999997652111 111111111122223334555555432     234566


Q ss_pred             EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEE-EEecCcCccEEEEEeCCCC--e
Q 012799          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-ICLSGHTLAVTCVKWGGDG--V  253 (456)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~--~  253 (456)
                      |+++..+.... .......|.+++-+|.    ....+++|+.||.+-+||.+..... ..++.|+.++..+.|+|..  .
T Consensus       164 ~~~~p~~t~~~-~~~~~~~v~~l~~hp~----qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~  238 (319)
T KOG4714|consen  164 NTLDPIKTLIP-SKKALDAVTALCSHPA----QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH  238 (319)
T ss_pred             ecccccccccc-cccccccchhhhCCcc----cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence            66654443221 1112234888888873    4457788899999999999887543 3457899999999999976  9


Q ss_pred             EEEEeCCCcEEEEECCC
Q 012799          254 IYTGSQDCTIKVWETTQ  270 (456)
Q Consensus       254 l~~~~~dg~i~iwd~~~  270 (456)
                      |++++.||.+..||..+
T Consensus       239 Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  239 LFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eeEecCCCcEEEEcCCC
Confidence            99999999999999875

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.95  E-value=3.1e-06  Score=72.03  Aligned_cols=217  Identities=16%  Similarity=0.187  Sum_probs=125.8

Q ss_pred             EEEEECC-CCCeEEEEECCC-cEEEEeCCCCcceeEEecCCCCEE--EEEEcCCCCEEEEEeC-----CCeEEEEeCCCC
Q 012799          112 LSVAFSP-DGRQLASGSGDT-TVRLWDLNTQTPMFKCTGHKNWVL--CIAWSADGKHLVSGSK-----AGELQCWDPQTG  182 (456)
Q Consensus       112 ~~~~~s~-~~~~l~~~~~d~-~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~  182 (456)
                      ..++.+| .+..++.+-.-| ...+||..+++....+....+.-.  .-.|++||++|++.-.     .|.|-|||...+
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            3578888 455666666555 577899999988877654333221  3589999999998644     478999999833


Q ss_pred             CCccccccCcccceEEEEecccccCCCCCEEEEEeC------------------CCcEEEEECCCCeEEEE--e--cCcC
Q 012799          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK------------------DGDARIWDVSLRKCVIC--L--SGHT  240 (456)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~--~--~~~~  240 (456)
                      -.....+..|.-.-..+.+.|     ++..|+++-.                  +..+...|..+++.+..  +  .-|.
T Consensus        88 ~~ri~E~~s~GIGPHel~l~p-----DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~  162 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMP-----DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ  162 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcC-----CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence            222223444444455677777     8877777632                  12233334444444333  2  1234


Q ss_pred             ccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799          241 LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (456)
Q Consensus       241 ~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (456)
                      ..|..+++.++|.++.+...      .-....                                                
T Consensus       163 lSiRHLa~~~~G~V~~a~Q~------qg~~~~------------------------------------------------  188 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFAMQY------QGDPGD------------------------------------------------  188 (305)
T ss_pred             cceeeEEecCCCcEEEEEec------CCCCCc------------------------------------------------
Confidence            44555555555433333221      000000                                                


Q ss_pred             hhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEE-EECCCcEEEEeCCCCeEEEEEe
Q 012799          321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       321 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~  399 (456)
                             ....++.-..++.+...+...     .....-...+-+|++++++.++++ +-.-|.+.+||..+++++....
T Consensus       189 -------~~PLva~~~~g~~~~~~~~p~-----~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  189 -------APPLVALHRRGGALRLLPAPE-----EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             -------cCCeEEEEcCCCcceeccCCh-----HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence                   011233333333344444221     112334567899999999988755 4466799999999999887665

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.95  E-value=2e-08  Score=94.64  Aligned_cols=183  Identities=14%  Similarity=0.160  Sum_probs=135.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC
Q 012799          161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT  240 (456)
Q Consensus       161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  240 (456)
                      ++..++.|+....+..+|+++.+... ...-....|.-++.       +++.+.+|...|+|.+-|.++.+.+.++..|.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r-~~~v~a~~v~imR~-------Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs  217 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETR-TTNVSASGVTIMRY-------NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS  217 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeee-eeeccCCceEEEEe-------cCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence            45567778877888899998877654 22222233666655       66899999999999999999999999999999


Q ss_pred             ccEEEEEeCCCCeEEEEeCC---------CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChH
Q 012799          241 LAVTCVKWGGDGVIYTGSQD---------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (456)
Q Consensus       241 ~~v~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (456)
                      +.|.++....+ .|++++..         .-|++||+|+.+.+.-+.-+.++ .-+.|.|..                  
T Consensus       218 ~siSDfDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl------------------  277 (1118)
T KOG1275|consen  218 GSISDFDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSL------------------  277 (1118)
T ss_pred             cceeeeeccCC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccc------------------
Confidence            99998887754 77776653         45789999988776655544333 334444442                  


Q ss_pred             HHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC---ccccccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799          312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (456)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  388 (456)
                                       ...+++++..|...+-|...-..+   ..........+..+++|++|+.+|.|..+|.|.+|.
T Consensus       278 -----------------~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  278 -----------------TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             -----------------cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence                             456889999999999994333222   233334445699999999999999999999999997

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.93  E-value=9.5e-07  Score=81.64  Aligned_cols=231  Identities=11%  Similarity=0.038  Sum_probs=142.6

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCC-CE-E-----EEEEcC--CCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN-WV-L-----CIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNPLS  190 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~-~v-~-----~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  190 (456)
                      +..+++++.++.+.-+|..+|+.+........ .. .     .+.-.|  ++..++.++.+|.+..+|.++|+...+...
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  148 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV  148 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence            55677777889999999999988876542220 00 0     000111  455777888899999999999997663322


Q ss_pred             CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccE-----EEEEeCCCCeEEEEeCCCcEEE
Q 012799          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-----TCVKWGGDGVIYTGSQDCTIKV  265 (456)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~l~~~~~dg~i~i  265 (456)
                      .  ..+.   -.|..   .+..++.++.++.+..+|..+++.+.........+     ..-... ++.++.++.+|.+..
T Consensus       149 ~--~~~~---ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a  219 (394)
T PRK11138        149 A--GEAL---SRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRVSA  219 (394)
T ss_pred             C--Ccee---cCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEEEE
Confidence            1  1221   11211   33567778889999999999999887775321111     011111 346777888999999


Q ss_pred             EECCCCeEEEEeecCCc----c---eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799          266 WETTQGKLIRELKGHGH----W---VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (456)
Q Consensus       266 wd~~~~~~~~~~~~~~~----~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (456)
                      +|..+|+.+........    .   ...+..+|-                                  ..+..++.++.+
T Consensus       220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~----------------------------------v~~~~vy~~~~~  265 (394)
T PRK11138        220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV----------------------------------VVGGVVYALAYN  265 (394)
T ss_pred             EEccCChhhheeccccCCCccchhcccccCCCcE----------------------------------EECCEEEEEEcC
Confidence            99999887655431110    0   000000110                                  014557778889


Q ss_pred             CcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 012799          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (456)
Q Consensus       339 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  398 (456)
                      |.+..+|..+++.......+.   ...+..  .+..|+.++.+|.+..+|..+|+.+...
T Consensus       266 g~l~ald~~tG~~~W~~~~~~---~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        266 GNLVALDLRSGQIVWKREYGS---VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             CeEEEEECCCCCEEEeecCCC---ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence            999999987765443322111   112222  4567788889999999999999876543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.90  E-value=3e-07  Score=78.80  Aligned_cols=209  Identities=21%  Similarity=0.184  Sum_probs=126.8

Q ss_pred             CCeEEEEeCCCCCCccccccCc-ccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeC
Q 012799          171 AGELQCWDPQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG  249 (456)
Q Consensus       171 dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  249 (456)
                      +|.|..||..+|+.+....... ........ .+     ++..+++++.++.+..||..+++.+..+.... .+......
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~-----~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~   74 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATA-VP-----DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAPVV   74 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETE-EE-----ETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceE-EE-----eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccceeee
Confidence            6789999998888765332211 11111101 11     45678888999999999999999888776422 11111123


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCeEEEEe-ecCCcce-----EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799          250 GDGVIYTGSQDCTIKVWETTQGKLIREL-KGHGHWV-----NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (456)
Q Consensus       250 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (456)
                      .++.+++++.++.++.+|..+|+.+... .......     ....+.                                 
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~---------------------------------  121 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD---------------------------------  121 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE---------------------------------
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe---------------------------------
Confidence            3457788888899999999999998874 3221111     111111                                 


Q ss_pred             ccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccc----------cEeEEEECCCCCEEEEEECCCcEEEEeCCCCe
Q 012799          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ----------LVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (456)
Q Consensus       324 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~  393 (456)
                           ++.++.+..++.|..+|+.+++....... ...          .+..-....++ .++.++.+|.+.-+|+.+++
T Consensus       122 -----~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~  194 (238)
T PF13360_consen  122 -----GDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE  194 (238)
T ss_dssp             -----TTEEEEEETCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE
T ss_pred             -----cCEEEEEeccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC
Confidence                 45588888899999999877764333221 111          11222222345 67777777754444999999


Q ss_pred             EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       394 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .+....  ...+..                            ....++..|+.++.|+.|..|
T Consensus       195 ~~w~~~--~~~~~~----------------------------~~~~~~~~l~~~~~~~~l~~~  227 (238)
T PF13360_consen  195 KLWSKP--ISGIYS----------------------------LPSVDGGTLYVTSSDGRLYAL  227 (238)
T ss_dssp             EEEEEC--SS-ECE----------------------------CEECCCTEEEEEETTTEEEEE
T ss_pred             EEEEec--CCCccC----------------------------CceeeCCEEEEEeCCCEEEEE
Confidence            765333  222222                            136777888888888888764

...

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=1.1e-07  Score=88.66  Aligned_cols=161  Identities=20%  Similarity=0.255  Sum_probs=119.0

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  187 (456)
                      .+.++|++++  +++|+-|+.+|.|++++.... + .+...|+..      ..+|.++++|+.||+|.|-.+-+.+... 
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~-  107 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT-  107 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce-
Confidence            5677888886  678999999999999997643 3 333345443      5589999999999999999988777653 


Q ss_pred             cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC---CCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEE
Q 012799          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS---LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK  264 (456)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~  264 (456)
                       ......++.+++++|.-.....+.+++||..| +.++.-+   ....+ .+....++|.++.|..+ .++-++.+| |+
T Consensus       108 -~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~-lIAWand~G-v~  182 (846)
T KOG2066|consen  108 -QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGN-LIAWANDDG-VK  182 (846)
T ss_pred             -eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecCc-EEEEecCCC-cE
Confidence             34456789999999964444567899999988 7776532   11112 34556789999999865 666666666 99


Q ss_pred             EEECCCCeEEEEeecCCcce
Q 012799          265 VWETTQGKLIRELKGHGHWV  284 (456)
Q Consensus       265 iwd~~~~~~~~~~~~~~~~i  284 (456)
                      +||+.+++.+..++.....+
T Consensus       183 vyd~~~~~~l~~i~~p~~~~  202 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPPPSQSV  202 (846)
T ss_pred             EEeccccceeeccCCCCCCC
Confidence            99999998888776544433

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=9.8e-09  Score=85.95  Aligned_cols=134  Identities=13%  Similarity=0.210  Sum_probs=107.5

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC-----cceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEE
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQ  175 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~  175 (456)
                      +.|. ....|.++.|...++++..|+.+|.|...|++..     .+...+ -|...|+++..-. ++.+|.+.+.+|+|+
T Consensus       247 qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkik  324 (425)
T KOG2695|consen  247 QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIK  324 (425)
T ss_pred             cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCcee
Confidence            3443 5678999999999999999999999999999764     333444 4999999998877 788999999999999


Q ss_pred             EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC
Q 012799          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG  238 (456)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  238 (456)
                      +||++--+... ......+.|...++.|.+..+....+++++.|...+||.++.+..+.++..
T Consensus       325 LyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  325 LYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             Eeeehhhhccc-ceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            99998655422 233334456677777877777888999999999999999999998888754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.85  E-value=1e-05  Score=69.49  Aligned_cols=216  Identities=18%  Similarity=0.219  Sum_probs=133.5

Q ss_pred             EEEECC-CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCCCccccc-
Q 012799          113 SVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPL-  189 (456)
Q Consensus       113 ~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-  189 (456)
                      ++.|.+ ++.++++--..+.|..|+..+++... +....  ...+++. +++ .|+.+...+ +.++|..+++...... 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            578888 67777776678999999998765433 22222  7777887 565 555555554 5556988875432111 


Q ss_pred             --cC-cccceEEEEecccccCCCCCEEEEEeCC--------CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEE-E
Q 012799          190 --SG-HKKWITGISWEPVHLNAPCRRFVSASKD--------GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY-T  256 (456)
Q Consensus       190 --~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~  256 (456)
                        .. .......+++.|     +|+..++....        |.|..++.. ++..... ..-.....++|+|++ .|+ +
T Consensus        79 ~~~~~~~~~~ND~~vd~-----~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~  151 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDP-----DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVA  151 (246)
T ss_dssp             ETTCSCTEEEEEEEE-T-----TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEE
T ss_pred             cCCCcccCCCceEEEcC-----CCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeec
Confidence              11 345677888888     88877765543        557777777 5543333 234567899999999 454 5


Q ss_pred             EeCCCcEEEEECCCCe--E-----EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799          257 GSQDCTIKVWETTQGK--L-----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (456)
Q Consensus       257 ~~~dg~i~iwd~~~~~--~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (456)
                      -+..+.|..|++....  .     ...+.........+++..+                                    +
T Consensus       152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~------------------------------------G  195 (246)
T PF08450_consen  152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD------------------------------------G  195 (246)
T ss_dssp             ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT------------------------------------S
T ss_pred             ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC------------------------------------C
Confidence            5677889999885321  1     1122222223566777766                                    5


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEE-CCCCCEEEEE
Q 012799          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF-SPDGQWVASA  378 (456)
Q Consensus       330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~s~  378 (456)
                      +..++....+.|.++|.. ++ ....+.-....+++++| -++.+.|+..
T Consensus       196 ~l~va~~~~~~I~~~~p~-G~-~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  196 NLWVADWGGGRIVVFDPD-GK-LLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             -EEEEEETTTEEEEEETT-SC-EEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             CEEEEEcCCCEEEEECCC-cc-EEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            557777788999999965 33 33333333457899999 4665555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.82  E-value=1.5e-08  Score=58.74  Aligned_cols=38  Identities=39%  Similarity=0.743  Sum_probs=36.1

Q ss_pred             cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799          141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (456)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  178 (456)
                      +++.++.+|...|++++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=1.4e-08  Score=85.01  Aligned_cols=152  Identities=17%  Similarity=0.290  Sum_probs=114.0

Q ss_pred             EEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC---ccccccCcccceEEEE
Q 012799          124 ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP---SGNPLSGHKKWITGIS  200 (456)
Q Consensus       124 ~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~  200 (456)
                      ++.+.+-.|-+-|++++... .+. ..+.|.++.|...++++..|.++|.|..+|++.+..   -.....-|...|+++.
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq  305 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQ  305 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhh
Confidence            34445667888888876432 232 567799999998899999999999999999986521   1223445778888876


Q ss_pred             ecccccCCCCCEEEEEeCCCcEEEEECCCCeE---EEEecCcCccEEEEE--eCC-CCeEEEEeCCCcEEEEECCCCeEE
Q 012799          201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHTLAVTCVK--WGG-DGVIYTGSQDCTIKVWETTQGKLI  274 (456)
Q Consensus       201 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~--~~~-~~~l~~~~~dg~i~iwd~~~~~~~  274 (456)
                      ....    ++++|++.+.+|+|++||.+.-++   +..+.+|-..-.-+-  +.+ +|.+++++.|...+||.++.+..+
T Consensus       306 ~Lq~----s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  306 ILQF----SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL  381 (425)
T ss_pred             hhcc----ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence            5442    568999999999999999987777   888888865433333  334 348889999999999999999999


Q ss_pred             EEeecCC
Q 012799          275 RELKGHG  281 (456)
Q Consensus       275 ~~~~~~~  281 (456)
                      .+++...
T Consensus       382 ~tipf~~  388 (425)
T KOG2695|consen  382 CTIPFPY  388 (425)
T ss_pred             eccCCCC
Confidence            8886543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=1.4e-07  Score=82.04  Aligned_cols=243  Identities=17%  Similarity=0.173  Sum_probs=159.5

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEEC-CCcEEEEeCCCCcceeEEe--cCCCCEEEEEEcCC-CC-EEEEE-eCCCeE
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSAD-GK-HLVSG-SKAGEL  174 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~-d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~-~l~s~-~~dg~i  174 (456)
                      +..+..|...|.+++.+.+|.++.+.+. |..++++|+++-..+..+.  .-.+.+..+ .++. -. .|+.+ -.+|.+
T Consensus        46 VKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i  124 (558)
T KOG0882|consen   46 VKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKI  124 (558)
T ss_pred             hhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCc
Confidence            4567889999999999999999999877 9999999998755442222  122222221 1221 11 33333 357889


Q ss_pred             EEEeCCCCC-CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC------CeE---------EEEecC
Q 012799          175 QCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL------RKC---------VICLSG  238 (456)
Q Consensus       175 ~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~---------~~~~~~  238 (456)
                      .++|-.... +......-|..+|..+.+.+     .+..+++....|.|.-|....      .+.         +..+..
T Consensus       125 ~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-----a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K  199 (558)
T KOG0882|consen  125 FVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-----AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK  199 (558)
T ss_pred             EEECCcCCcCccceecccccCceEEEEeec-----cccceeeccccceeEeecCCCcccCccccccccccccchhhcccc
Confidence            999977554 33334566889999999998     778899999999999998763      111         112223


Q ss_pred             cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799          239 HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (456)
Q Consensus       239 ~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (456)
                      .....+++.++|++ .+.+-+.|..|++++.++|+.++.+......-....-++                          
T Consensus       200 ~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~--------------------------  253 (558)
T KOG0882|consen  200 AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSP--------------------------  253 (558)
T ss_pred             cccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccc--------------------------
Confidence            45668899999999 888888999999999999998887753221111110000                          


Q ss_pred             HhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC--CCccccccccc-cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799          318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQ-LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF  394 (456)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~-~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~  394 (456)
                                             +.+-++.-+.  ...+.+..|.. .-+.++|...|++|+.|+-=| |++.++.+++.
T Consensus       254 -----------------------y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v  309 (558)
T KOG0882|consen  254 -----------------------YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV  309 (558)
T ss_pred             -----------------------cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence                                   0000000000  01111222332 345678999999999998777 89999999888


Q ss_pred             EEEEe
Q 012799          395 VAVFR  399 (456)
Q Consensus       395 ~~~~~  399 (456)
                      .+.+-
T Consensus       310 ~ri~g  314 (558)
T KOG0882|consen  310 VRILG  314 (558)
T ss_pred             EEEec
Confidence            77664

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=1.2e-06  Score=82.01  Aligned_cols=142  Identities=23%  Similarity=0.312  Sum_probs=106.6

Q ss_pred             CCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC-----CCEEEEEeCCCeEEEEeCCC-CCCccccccC
Q 012799          118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-----GKHLVSGSKAGELQCWDPQT-GKPSGNPLSG  191 (456)
Q Consensus       118 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~  191 (456)
                      .+|.++++|+.||+|.|-.+.+.+...++. ...++.+++++|+     .+.+++||..| +.++.-+= |......+..
T Consensus        81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~  158 (846)
T KOG2066|consen   81 LEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE  158 (846)
T ss_pred             cCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence            359999999999999999998888777665 5678999999997     67899999988 77775331 1111113566


Q ss_pred             cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc------EEEEEeCCCCeEEEEeCCCcEEE
Q 012799          192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA------VTCVKWGGDGVIYTGSQDCTIKV  265 (456)
Q Consensus       192 ~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------v~~~~~~~~~~l~~~~~dg~i~i  265 (456)
                      ..++|.++.|       .|+++|-++.+| |++||..+++.+..+......      -..+.|.++..|+.|=. .+|++
T Consensus       159 ~eG~I~~i~W-------~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~-d~v~i  229 (846)
T KOG2066|consen  159 GEGPIHSIKW-------RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG-DSVKI  229 (846)
T ss_pred             CccceEEEEe-------cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC-CeEEE
Confidence            6789999999       567888888777 999999999888777544333      34577877766666544 46888


Q ss_pred             EECCC
Q 012799          266 WETTQ  270 (456)
Q Consensus       266 wd~~~  270 (456)
                      ..++.
T Consensus       230 ~~I~~  234 (846)
T KOG2066|consen  230 CSIKK  234 (846)
T ss_pred             EEEec
Confidence            88773

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.74  E-value=3.3e-05  Score=63.95  Aligned_cols=132  Identities=14%  Similarity=0.171  Sum_probs=79.8

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCCC----ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe
Q 012799          156 IAWSADGKHLVSGSKAGELQCWDPQTGKP----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK  231 (456)
Q Consensus       156 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  231 (456)
                      ++.+.+|+.||.. .|..|.|=..+..-.    ...........-..++|+|     |+..||.+...|+|+++|+....
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-----D~tlLa~a~S~G~i~vfdl~g~~   76 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-----DCTLLAYAESTGTIRVFDLMGSE   76 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-----CCcEEEEEcCCCeEEEEecccce
Confidence            4566788877765 355666554443211    1112222333456789998     99999999999999999987533


Q ss_pred             EEEEecC-------cCccEEEEEeCCCC-------eEEEEeCCCcEEEEECCCC-----eEEEEee---cCCcceEEEEe
Q 012799          232 CVICLSG-------HTLAVTCVKWGGDG-------VIYTGSQDCTIKVWETTQG-----KLIRELK---GHGHWVNSLAL  289 (456)
Q Consensus       232 ~~~~~~~-------~~~~v~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~-----~~~~~~~---~~~~~i~~~~~  289 (456)
                       +..+..       -...|..+.|.+..       .|++-..+|.++-|-+..+     +...++.   .....|.++.+
T Consensus        77 -lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy  155 (282)
T PF15492_consen   77 -LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY  155 (282)
T ss_pred             -eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence             333321       12456666664321       6777788888877765322     2223332   23557888888


Q ss_pred             cCcce
Q 012799          290 STEYA  294 (456)
Q Consensus       290 ~~~~~  294 (456)
                      +|...
T Consensus       156 ~p~h~  160 (282)
T PF15492_consen  156 HPKHR  160 (282)
T ss_pred             cCCCC
Confidence            88743

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.70  E-value=1.6e-08  Score=95.06  Aligned_cols=166  Identities=15%  Similarity=0.215  Sum_probs=123.5

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC--eEEE
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQC  176 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~v  176 (456)
                      +..++++.|+...+|++|+-+.++|+.|+..|.|+++++.+|.......+|...|+-+.-+.+|..+++.+.-.  ...+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999888765433  4788


Q ss_pred             EeCCCCCCccccccCcc-cceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec----CcCccEEEEEeCCC
Q 012799          177 WDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGGD  251 (456)
Q Consensus       177 wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~  251 (456)
                      |++.+-...     .|. ..-.++.|+.     ....-+.|.......+||+.++.++.++.    +.+..-++..|+|.
T Consensus      1172 W~~~s~~~~-----~Hsf~ed~~vkFsn-----~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1172 WDASSTGGP-----RHSFDEDKAVKFSN-----SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred             hccccccCc-----cccccccceeehhh-----hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence            998752211     121 2345667765     22334556666779999999988766532    12223367889998


Q ss_pred             CeEEEEeCCCcEEEEECCCCeEEEEee
Q 012799          252 GVIYTGSQDCTIKVWETTQGKLIRELK  278 (456)
Q Consensus       252 ~~l~~~~~dg~i~iwd~~~~~~~~~~~  278 (456)
                      ..|+.  .||.  +||++..+.++.|.
T Consensus      1242 D~LIl--ndGv--LWDvR~~~aIh~FD 1264 (1516)
T KOG1832|consen 1242 DTLIL--NDGV--LWDVRIPEAIHRFD 1264 (1516)
T ss_pred             cceEe--eCce--eeeeccHHHHhhhh
Confidence            74443  4553  69999877666664

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=3.1e-06  Score=72.87  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=84.4

Q ss_pred             CcccEEEEEECCCCCeEEEEEC-----------------CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCC-EEEEE
Q 012799          107 HTEAVLSVAFSPDGRQLASGSG-----------------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK-HLVSG  168 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~-----------------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~  168 (456)
                      |...-.++.+++..++++.+..                 =| +++.+..+.+....+.++...|..++|+|..+ ++..+
T Consensus       134 h~qk~f~v~r~~gcrli~y~~~~s~lv~sQks~qa~lpGvG-v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~a  212 (463)
T KOG1645|consen  134 HKQKSFSVGRNAGCRLIGYDESSSTLVVSQKSGQALLPGVG-VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLA  212 (463)
T ss_pred             hcccceeeeecCCceEEecccccceeeeeccchhhcCCccc-eEEeccCCcchhhcccccchhhhhhccCccccceeeee
Confidence            6666666666665444332211                 12 45555444455555667888999999999766 78889


Q ss_pred             eCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe
Q 012799          169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK  231 (456)
Q Consensus       169 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  231 (456)
                      +.+.+|+|.|+++...+. ....+ ..+++++|.-.    +..++.+|...|.|.+||++..+
T Consensus       213 sl~nkiki~dlet~~~vs-sy~a~-~~~wSC~wDld----e~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  213 SLGNKIKIMDLETSCVVS-SYIAY-NQIWSCCWDLD----ERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ccCceEEEEecccceeee-heecc-CCceeeeeccC----CcceeEEeccCceEEEEEccCCC
Confidence            999999999999887665 34444 78999999873    34677888889999999998654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.64  E-value=2.8e-05  Score=73.79  Aligned_cols=246  Identities=15%  Similarity=0.130  Sum_probs=139.2

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCC------CEE--EEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccC
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN------WVL--CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG  191 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  191 (456)
                      +..++.++.++.+.-.|..+++.+........      .+.  .++.. ++..++.++.+|.|.-+|.++|+.+.+....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            34566677789999999999988877653322      010  11111 2267888889999999999999876532221


Q ss_pred             ccc-ceEEEEecccccCCCCCEEEEEe---------CCCcEEEEECCCCeEEEEecCcCc--------------------
Q 012799          192 HKK-WITGISWEPVHLNAPCRRFVSAS---------KDGDARIWDVSLRKCVICLSGHTL--------------------  241 (456)
Q Consensus       192 ~~~-~v~~~~~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~--------------------  241 (456)
                      ... .-..+.-.|.-   .+..++.++         .+|.+..+|..+++.+..+.....                    
T Consensus       140 ~~~~~~~~i~ssP~v---~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         140 DQVPPGYTMTGAPTI---VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             CCcCcceEecCCCEE---ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            110 00112222211   224555554         367899999999998877643211                    


Q ss_pred             cE-EEEEeCCC-CeEEEEeCCC------------------cEEEEECCCCeEEEEeecCCcceEE--EEecCcceeeecc
Q 012799          242 AV-TCVKWGGD-GVIYTGSQDC------------------TIKVWETTQGKLIRELKGHGHWVNS--LALSTEYALRTGA  299 (456)
Q Consensus       242 ~v-~~~~~~~~-~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~  299 (456)
                      .+ ...++++. +.++.++.++                  .|.-+|..+|+.+..++........  ....|.  +....
T Consensus       217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~--~~~~~  294 (488)
T cd00216         217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPS--LADIK  294 (488)
T ss_pred             CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCe--EEecc
Confidence            01 12344433 4777787665                  6999999999988876532221111  000000  00000


Q ss_pred             ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE-
Q 012799          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-  378 (456)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-  378 (456)
                                             ...+.....++.++.+|.++..|..+++........    ...++.+|  ..++.+ 
T Consensus       295 -----------------------~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~  345 (488)
T cd00216         295 -----------------------PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGA  345 (488)
T ss_pred             -----------------------ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEcc
Confidence                                   000000125788889999999998877654432211    11233444  233332 


Q ss_pred             -----------------ECCCcEEEEeCCCCeEEEEEec
Q 012799          379 -----------------SFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       379 -----------------~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                                       ..+|.+.-.|..+|+.+.....
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~  384 (488)
T cd00216         346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKRE  384 (488)
T ss_pred             ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeC
Confidence                             2467888899999988776653

The alignment model contains an 8-bladed beta-propeller.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.64  E-value=3.2e-06  Score=79.66  Aligned_cols=109  Identities=17%  Similarity=0.309  Sum_probs=87.1

Q ss_pred             EEEEECCCCCeEEEEE----CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799          112 LSVAFSPDGRQLASGS----GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (456)
Q Consensus       112 ~~~~~s~~~~~l~~~~----~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  187 (456)
                      +-.+|+|...++|.++    ..|.|.||- ++|++-.... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+.- .
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-t   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-T   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceee-e
Confidence            3467999999998886    457898885 5566543322 2334677999999989999999999999998776543 3


Q ss_pred             cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (456)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  228 (456)
                      ....|..+|..+.|++     +|..++++..-|.+.+|...
T Consensus        96 v~~th~a~i~~l~wS~-----~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSH-----DGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eccCCCCCceeEEecC-----CCCeEEEcCCCceeEEEEee
Confidence            5678999999999999     99999999999999999765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=1.4e-05  Score=75.63  Aligned_cols=174  Identities=12%  Similarity=0.107  Sum_probs=115.5

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCC-EEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCC
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW-VLCIAWSADGKHLVSGSKAG-----ELQCWDPQTGK  183 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~  183 (456)
                      .|+|  |++.+..+|.|+.+|.|.+.+- ..+.+..++.+... |..+....+..+|++.+.|+     .+++|+++.-+
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            4544  6778889999999999888873 23444667777766 45444444557888877765     49999987542


Q ss_pred             C----ccc---ccc-----CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC----CCeEEEEecCcCccEEEEE
Q 012799          184 P----SGN---PLS-----GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS----LRKCVICLSGHTLAVTCVK  247 (456)
Q Consensus       184 ~----~~~---~~~-----~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~  247 (456)
                      .    ...   ...     ....++..++.+.     +-..+|+|-.+|.|..+.-.    .+....-......+|+.++
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-----~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~  178 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-----DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA  178 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEc-----cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence            1    110   011     1244566677666     66889999999999988432    1222222234568999999


Q ss_pred             eCCCC--eEEEEeCCCcEEEEECCCCeE-EEEeecCCcceEEEEecCc
Q 012799          248 WGGDG--VIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTE  292 (456)
Q Consensus       248 ~~~~~--~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~  292 (456)
                      +..++  .+++++. ..|.+|.+....+ ...+..++...+|.++++.
T Consensus       179 ~~~d~~s~lFv~Tt-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~  225 (933)
T KOG2114|consen  179 LRSDGKSVLFVATT-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDG  225 (933)
T ss_pred             EecCCceeEEEEec-ceeEEEEecCCCcceeeeccCCccceeeecCCC
Confidence            99888  3444444 5699999885442 4457778888888888875

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.62  E-value=1.2e-06  Score=83.12  Aligned_cols=179  Identities=13%  Similarity=0.190  Sum_probs=136.1

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI  199 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  199 (456)
                      +..++.|+....+..+|+.+.+......-....|+-+..  +++++.+|...|+|.+-|.++.+.+. .+..|.+.|.++
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~ih-t~~aHs~siSDf  223 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIH-TFDAHSGSISDF  223 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceee-eeeccccceeee
Confidence            446777777778888999888777666545545666664  78899999999999999999988876 688899999887


Q ss_pred             EecccccCCCCCEEEEEeC---------CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEE-
Q 012799          200 SWEPVHLNAPCRRFVSASK---------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWE-  267 (456)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd-  267 (456)
                      ..       .|+.|+++|.         |..|++||++..+.+.-+.-+.++ .-+.|.|.-  .+++++..|...+-| 
T Consensus       224 Dv-------~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~  295 (1118)
T KOG1275|consen  224 DV-------QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDT  295 (1118)
T ss_pred             ec-------cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccc
Confidence            65       6788998875         556899999988776655544443 446677754  889999999999999 


Q ss_pred             --CCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEE
Q 012799          268 --TTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (456)
Q Consensus       268 --~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  344 (456)
                        +.+. ..+..+...+..+..+.++++                                    ++.++.|..+|.|.+|
T Consensus       296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn------------------------------------~~alafgd~~g~v~~w  339 (1118)
T KOG1275|consen  296 ATLSNPPAGVKMVNPNGSGISAFDISSN------------------------------------GDALAFGDHEGHVNLW  339 (1118)
T ss_pred             cccCCCccceeEEccCCCcceeEEecCC------------------------------------CceEEEecccCcEeee
Confidence              4433 223334444555888888877                                    6679999999999999


Q ss_pred             e
Q 012799          345 E  345 (456)
Q Consensus       345 d  345 (456)
                      .
T Consensus       340 a  340 (1118)
T KOG1275|consen  340 A  340 (1118)
T ss_pred             c
Confidence            7

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.62  E-value=0.00011  Score=59.90  Aligned_cols=143  Identities=16%  Similarity=0.093  Sum_probs=98.0

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI  199 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  199 (456)
                      ..+++.|+..+.+.--|..+|+....-. -...+.+-+.- -|++++.|...|.+.+.+.++|...........-.+. .
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-A   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-e
Confidence            4577888888889999998888765432 23334333332 5678999999999999999999765432221111111 1


Q ss_pred             EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC-CCeEEEEeCCCcEEEEECCC
Q 012799          200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQ  270 (456)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~  270 (456)
                      ...+     ++..+..|+.|++.+..|.++..++...+...+...+-+..+ ++.|+++...|.+.--....
T Consensus       100 ~~d~-----~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  100 QCDF-----DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             EEcC-----CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence            1222     778999999999999999999999988765555444555555 55777777777766555444

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=3.2e-07  Score=79.82  Aligned_cols=208  Identities=16%  Similarity=0.100  Sum_probs=143.1

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEE
Q 012799          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT--GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIW  225 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw  225 (456)
                      |.+.|+.+.-. -.+++.+++.||.++.|.-..  +-........|...+.+++.+-     ++-.+.+.+. |..++++
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-----dg~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-----DGWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-----cceeEeeccCcccceeEE
Confidence            66667766544 567999999999999997653  2223334566777777777666     8888888777 9999999


Q ss_pred             ECCCCeEEEEecC--cCccEEEEEeCCC-C--eEEE-EeCCCcEEEEECCCCe--EEEEeecCCcceEEEEecCcceeee
Q 012799          226 DVSLRKCVICLSG--HTLAVTCVKWGGD-G--VIYT-GSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEYALRT  297 (456)
Q Consensus       226 d~~~~~~~~~~~~--~~~~v~~~~~~~~-~--~l~~-~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~  297 (456)
                      |+++-..+..++-  -.+.+..+ .++. -  .+++ ...+|.+.++|-....  ....-..|..+|..+.+.+.     
T Consensus        82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa-----  155 (558)
T KOG0882|consen   82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA-----  155 (558)
T ss_pred             EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecc-----
Confidence            9987655433322  12222222 2222 2  3333 3457899999977543  22333458889999988886     


Q ss_pred             ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-CC-------------ccccccccccE
Q 012799          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-QP-------------KTRMTGHQQLV  363 (456)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~-------------~~~~~~~~~~v  363 (456)
                                                     ++.+++....|.|.-|.....- .+             +..+.......
T Consensus       156 -------------------------------~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~p  204 (558)
T KOG0882|consen  156 -------------------------------GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEP  204 (558)
T ss_pred             -------------------------------ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCc
Confidence                                           4558888888999999865311 01             11112234567


Q ss_pred             eEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799          364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       364 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  399 (456)
                      .++.|+|+|..+.+-+.|..|++++.++|++++.+.
T Consensus       205 ts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  205 TSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             cceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence            899999999999999999999999999999887664

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.61  E-value=7.3e-05  Score=70.94  Aligned_cols=255  Identities=18%  Similarity=0.183  Sum_probs=136.3

Q ss_pred             CeEEEEECCCcEEEEeCCCCcceeEEecCCCC--EEEEEEcC--CCCEEEEEe---------CCCeEEEEeCCCCCCccc
Q 012799          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW--VLCIAWSA--DGKHLVSGS---------KAGELQCWDPQTGKPSGN  187 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~s~~---------~dg~i~vwd~~~~~~~~~  187 (456)
                      ..++.++.++.|+-+|.++++.+.........  -..+.-+|  .+..++.++         .+|.+..+|..+|+...+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            56777888999999999999988776533221  01111122  224455553         367899999999987653


Q ss_pred             cccCcccc-----------eE----EEEecccccCCCCCEEEEEeCCC------------------cEEEEECCCCeEEE
Q 012799          188 PLSGHKKW-----------IT----GISWEPVHLNAPCRRFVSASKDG------------------DARIWDVSLRKCVI  234 (456)
Q Consensus       188 ~~~~~~~~-----------v~----~~~~~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~  234 (456)
                      ........           +.    ...|.+......+..++.++.++                  .+.-+|..+++...
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            22211100           00    01111212222456777777665                  79999999999888


Q ss_pred             EecCcCcc-----------EEEEE-eCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccc
Q 012799          235 CLSGHTLA-----------VTCVK-WGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (456)
Q Consensus       235 ~~~~~~~~-----------v~~~~-~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  300 (456)
                      .+......           +..+. .....  .+++++.+|.+...|.++|+.+.......   ..++..|+. +.....
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~~~-vyv~~~  346 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDPGL-VYLGAF  346 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCCce-EEEccc
Confidence            76421111           11111 11111  57788899999999999999887664220   112223321 111100


Q ss_pred             cCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc-cc------ccE--eEEEECCC
Q 012799          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQ------QLV--NHVYFSPD  371 (456)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~------~~v--~~~~~sp~  371 (456)
                      ..... +...                  ...+.....+|.+...|+.+++.....-.+ +.      .+.  ..+..  .
T Consensus       347 ~~~~~-~~~~------------------~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~  405 (488)
T cd00216         347 HIPLG-LPPQ------------------KKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--A  405 (488)
T ss_pred             ccccc-Cccc------------------ccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--c
Confidence            00000 0000                  000011123455555555544433222111 00      111  11222  4


Q ss_pred             CCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          372 GQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       372 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                      +.+|+.++.||.++.+|..+|+.+..++.
T Consensus       406 g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         406 GNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            67888999999999999999999988774

The alignment model contains an 8-bladed beta-propeller.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.60  E-value=3.9e-08  Score=92.46  Aligned_cols=201  Identities=17%  Similarity=0.233  Sum_probs=135.9

Q ss_pred             cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC
Q 012799          141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (456)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg  220 (456)
                      +...++..|....+|++|+.+.++|+.|+..|.|+++++.+|.... ....|...|+.+.-+.     +|..+++.+.-.
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~-s~ncH~SavT~vePs~-----dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE-SVNCHQSAVTLVEPSV-----DGSTQLTSSSSS 1165 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc-cccccccccccccccC-----Ccceeeeecccc
Confidence            3445666788999999999999999999999999999999998766 6888999999887555     888877765533


Q ss_pred             --cEEEEECCC-CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee-c---CCcceEEEEecCc
Q 012799          221 --DARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK-G---HGHWVNSLALSTE  292 (456)
Q Consensus       221 --~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~---~~~~i~~~~~~~~  292 (456)
                        -..+|++.+ +...+++.    .-.++.|+... .-+.|+......+||+.++.++.++- +   ....-+...|+|.
T Consensus      1166 ~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred             CchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence              478899864 33444443    23567777654 33445555678899999988776632 1   1112244556665


Q ss_pred             ceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC
Q 012799          293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG  372 (456)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~  372 (456)
                      ..                                    .++   .||  .+||.+.. ..+..+..... --.-.|+|+|
T Consensus      1242 D~------------------------------------LIl---ndG--vLWDvR~~-~aIh~FD~ft~-~~~G~FHP~g 1278 (1516)
T KOG1832|consen 1242 DT------------------------------------LIL---NDG--VLWDVRIP-EAIHRFDQFTD-YGGGGFHPSG 1278 (1516)
T ss_pred             cc------------------------------------eEe---eCc--eeeeeccH-HHHhhhhhhee-cccccccCCC
Confidence            22                                    222   233  37997765 33333333221 1223699999


Q ss_pred             CEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799          373 QWVASASFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       373 ~~l~s~~~dg~i~iwd~~~~~~~~~~~  399 (456)
                      .-++.-+     .|||+++.+++....
T Consensus      1279 ~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1279 NEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred             ceEEeec-----hhhhhHHHHHHhcCc
Confidence            9888865     689999887765443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.60  E-value=5.2e-05  Score=74.75  Aligned_cols=239  Identities=16%  Similarity=0.191  Sum_probs=135.9

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  186 (456)
                      ..+.|.++.|..++.-++.+..+|.|.+-|.++.... ....-...|.+++|+||+..++..+.++++.+-.- +-.++.
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~  144 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIA  144 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchh
Confidence            4578999999999999999999999999987765432 23335788999999999999999998888766542 122211


Q ss_pred             c-ccc---CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE----
Q 012799          187 N-PLS---GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG----  257 (456)
Q Consensus       187 ~-~~~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~----  257 (456)
                      . .+.   ...+....+-|-.     .. .-+-|+. |.....+................=+.+.|-.|| ++++.    
T Consensus       145 E~~L~~d~~~~sk~v~VGwGr-----ke-Tqfrgs~-gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~  217 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGR-----KE-TQFRGSE-GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES  217 (1265)
T ss_pred             ccccccccccccccceecccc-----cc-eeeecch-hhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence            0 010   0011112222221     00 0111111 111111111000000000112223568999999 55552    


Q ss_pred             eCC-CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE-
Q 012799          258 SQD-CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG-  335 (456)
Q Consensus       258 ~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  335 (456)
                      ..+ ..|++||.+ |..-..-.....--.+++|-|.+.+                                    +++- 
T Consensus       218 ~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~------------------------------------iA~iq  260 (1265)
T KOG1920|consen  218 ETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSL------------------------------------IAAIQ  260 (1265)
T ss_pred             cCCceeEEEeccc-chhhcccCcccccccceeecCCCCe------------------------------------Eeeee
Confidence            223 789999976 4433322223333456778876433                                    4432 


Q ss_pred             --eCCCcEEEEecCCCCC---CccccccccccEeEEEECCCCCEEEE---EECCCcEEEEeCCCC
Q 012799          336 --SDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSPDGQWVAS---ASFDKSIKLWNGTTG  392 (456)
Q Consensus       336 --~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~s---~~~dg~i~iwd~~~~  392 (456)
                        ++|+.|.+|. +++-.   ...........+..++|+.++..||+   ......|++|-+.+.
T Consensus       261 ~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  261 CKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             ecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence              4566799998 43321   11122333445899999999999887   444455999988764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=1.4e-05  Score=75.70  Aligned_cols=209  Identities=11%  Similarity=0.114  Sum_probs=134.0

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccc-eEEEEecccccCCCCCEEEEEeCCCc-----EEEEECCCC
Q 012799          157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKW-ITGISWEPVHLNAPCRRFVSASKDGD-----ARIWDVSLR  230 (456)
Q Consensus       157 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~  230 (456)
                      +|++.+..++.|+.+|.|.+.+-.  .....-+..+... |..+....     ..++|++.+.|+.     +++||++..
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~-----~~~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILN-----KQNFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhccc-----CceEEEEEeecCCCCceEEEEeccccc
Confidence            466788899999999998887743  2221134444444 32222211     3357777777654     899998632


Q ss_pred             ------eEE--EEecC-----cCccEEEEEeCCCC-eEEEEeCCCcEEEEECC----CCeEEEEeecCCcceEEEEecCc
Q 012799          231 ------KCV--ICLSG-----HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT----QGKLIRELKGHGHWVNSLALSTE  292 (456)
Q Consensus       231 ------~~~--~~~~~-----~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~i~~~~~~~~  292 (456)
                            .++  ..+..     ...++.+++++.+- .+++|-.+|.|..+.-.    .+...........+|+.+++..+
T Consensus       103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence                  333  12212     35678888888776 88899999999988422    12222233345678999998876


Q ss_pred             ceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC
Q 012799          293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG  372 (456)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~  372 (456)
                      .                                    ..++....-..|.+|.+.........+..|.....|..+++..
T Consensus       183 ~------------------------------------~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t  226 (933)
T KOG2114|consen  183 G------------------------------------KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT  226 (933)
T ss_pred             C------------------------------------ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCC
Confidence            3                                    2223333445788888774443344477788889999999866


Q ss_pred             CEEEEEECCCcEEEEeCCCCeEEEEEe-cccccEEEEE
Q 012799          373 QWVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQIR  409 (456)
Q Consensus       373 ~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~  409 (456)
                      ..+++++ +..+.+|+.....+...+. +|......+.
T Consensus       227 ~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~  263 (933)
T KOG2114|consen  227 YQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLVFS  263 (933)
T ss_pred             ccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEEEe
Confidence            5455444 4469999988777777887 7776655553

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.56  E-value=2.5e-05  Score=70.88  Aligned_cols=94  Identities=19%  Similarity=0.228  Sum_probs=60.4

Q ss_pred             CCCCCeEEEEE---------CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799          117 SPDGRQLASGS---------GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (456)
Q Consensus       117 s~~~~~l~~~~---------~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  187 (456)
                      |||+++++...         ..+.+.|+|+.+++...... ....+....|+|+|+.++... ++.|.+++..++.....
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            67888777632         34579999999865443322 367789999999999999875 57899999877654332


Q ss_pred             cccC-------c---------ccceEEEEecccccCCCCCEEEEEe
Q 012799          188 PLSG-------H---------KKWITGISWEPVHLNAPCRRFVSAS  217 (456)
Q Consensus       188 ~~~~-------~---------~~~v~~~~~~~~~~~~~~~~l~~~~  217 (456)
                      ...+       -         -+.-.++-|+|     ++++|+...
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-----d~~~la~~~  119 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-----DSKYLAFLR  119 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-T-----TSSEEEEEE
T ss_pred             ccccceeEEcCccceeccccccccccceEECC-----CCCEEEEEE
Confidence            2222       0         11224677888     888887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1.2e-05  Score=69.42  Aligned_cols=147  Identities=17%  Similarity=0.221  Sum_probs=96.6

Q ss_pred             ccccccCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEE
Q 012799          100 CSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCW  177 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vw  177 (456)
                      ...-+.+|...|..++|||..+ ++..++.+.+|+|.|+++...+..+..+ ..+.+++|.-| .++|..|-..|.|.+|
T Consensus       185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy  263 (463)
T KOG1645|consen  185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY  263 (463)
T ss_pred             hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence            3456788999999999999877 7888899999999999999888888877 88999999875 4577788889999999


Q ss_pred             eCCCCCCccccccC--cccceEEEEecccc-cCCCCCEEEEEeCCCcEEEEECCC----CeEEEEecCcCccEEEEEeCC
Q 012799          178 DPQTGKPSGNPLSG--HKKWITGISWEPVH-LNAPCRRFVSASKDGDARIWDVSL----RKCVICLSGHTLAVTCVKWGG  250 (456)
Q Consensus       178 d~~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~  250 (456)
                      |++..+.....+.+  ...+|..++..+.. ....+..++....+  +..|++.-    ..++..+ +..+...++++.+
T Consensus       264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel-e~pG~cismqy~~  340 (463)
T KOG1645|consen  264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL-EPPGICISMQYHG  340 (463)
T ss_pred             EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc-CCCcceeeeeecC
Confidence            99876543222222  22345444433311 11234444444433  45555431    1122222 2244555666665

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.53  E-value=2.4e-05  Score=77.00  Aligned_cols=228  Identities=12%  Similarity=0.148  Sum_probs=135.0

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  228 (456)
                      ....|.++.|..++..++.+..+|.|.+-|.++....  ....-...|.+++|+|     ++..++..+..+++.+-+- 
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~-----Dee~l~liT~~~tll~mT~-  138 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSP-----DEELLALITGRQTLLFMTK-  138 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecC-----CCcEEEEEeCCcEEEEEec-
Confidence            3468999999999999999999999999998877654  3455677899999999     9999999998887766532 


Q ss_pred             CCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEE-----EEee-----cCCcceEEEEecCcceeeec
Q 012799          229 LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI-----RELK-----GHGHWVNSLALSTEYALRTG  298 (456)
Q Consensus       229 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~-----~~~~~i~~~~~~~~~~~~~~  298 (456)
                      +..++....-      ...-.+.+.++.++....=.-+.-..|+..     ...+     ...+.-+++.|-.+      
T Consensus       139 ~f~~i~E~~L------~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD------  206 (1265)
T KOG1920|consen  139 DFEPIAEKPL------DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD------  206 (1265)
T ss_pred             cccchhcccc------ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC------
Confidence            2222211110      011112223344333332222221111110     0000     01112244666655      


Q ss_pred             cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE-----EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCC
Q 012799          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-----GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ  373 (456)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~  373 (456)
                                                    ++++++     ......|++||-. +. .-..-....+.-.+++|-|.|.
T Consensus       207 ------------------------------g~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs  254 (1265)
T KOG1920|consen  207 ------------------------------GEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGS  254 (1265)
T ss_pred             ------------------------------CcEEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccceeecCCCC
Confidence                                          445555     2333799999933 22 1111122233446789999999


Q ss_pred             EEEEE---ECCCcEEEEeCCCCeE----EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEE
Q 012799          374 WVASA---SFDKSIKLWNGTTGKF----VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS  446 (456)
Q Consensus       374 ~l~s~---~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s  446 (456)
                      ++++-   +.|+.|.+|.- +|-.    .-.+.....++..+                           +|+.++..||.
T Consensus       255 ~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L---------------------------~Wns~sdiLAv  306 (1265)
T KOG1920|consen  255 LIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEEL---------------------------AWNSNSDILAV  306 (1265)
T ss_pred             eEeeeeecCCCCcEEEEec-CCccccccccCCcccccchhee---------------------------eecCCCCceee
Confidence            99885   34567999984 3332    22223333346666                           99999999998


Q ss_pred             ---eeCCCceEEC
Q 012799          447 ---GSKDSTLKVT  456 (456)
Q Consensus       447 ---~s~Dg~v~iW  456 (456)
                         ......|++|
T Consensus       307 ~~~~~e~~~v~lw  319 (1265)
T KOG1920|consen  307 VTSNLENSLVQLW  319 (1265)
T ss_pred             eecccccceEEEE
Confidence               5555568888

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.45  E-value=3e-05  Score=70.36  Aligned_cols=117  Identities=19%  Similarity=0.266  Sum_probs=75.2

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-------------------------------------------ceeEE
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-------------------------------------------PMFKC  146 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-------------------------------------------~~~~~  146 (456)
                      .|+.+.|+++..-||+|...|.|.||.....+                                           +...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999998889999999999998753211                                           11112


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc-------cccCcccceEEEEecccccCCCC---CEEEEE
Q 012799          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN-------PLSGHKKWITGISWEPVHLNAPC---RRFVSA  216 (456)
Q Consensus       147 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~---~~l~~~  216 (456)
                      ....++|++++.+ |=.++|.|..+|.+.|.|++....+..       ........++++.|.......|+   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            2346889999997 555999999999999999976654332       11123346778888765554444   467777


Q ss_pred             eCCCcEEEEEC
Q 012799          217 SKDGDARIWDV  227 (456)
Q Consensus       217 ~~dg~i~iwd~  227 (456)
                      +..|.+.+|.+
T Consensus       162 Tn~G~v~~fkI  172 (395)
T PF08596_consen  162 TNSGNVLTFKI  172 (395)
T ss_dssp             ETTSEEEEEEE
T ss_pred             eCCCCEEEEEE
Confidence            77788777765

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.44  E-value=0.00089  Score=58.68  Aligned_cols=231  Identities=15%  Similarity=0.126  Sum_probs=129.6

Q ss_pred             CCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc---------
Q 012799          118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP---------  188 (456)
Q Consensus       118 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---------  188 (456)
                      ..++.|+.|+.+| +.+++........... +...|..+...|+-+.+++-+ |+.+.++++..-......         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3578899999998 9999983332222222 333499999999877776664 499999998765443211         


Q ss_pred             ----ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-----eEEEEecCcCccEEEEEeCCCCeEEEEeC
Q 012799          189 ----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-----KCVICLSGHTLAVTCVKWGGDGVIYTGSQ  259 (456)
Q Consensus       189 ----~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~l~~~~~  259 (456)
                          .......+...+  ..... .+...++......|.+|.....     +....+. -...+.+++|.++ .++.|..
T Consensus        82 ~~~~~~~~~~~v~~f~--~~~~~-~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~-~i~v~~~  156 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFA--VNGGH-EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN-KICVGTS  156 (275)
T ss_pred             cccccccccCCeeEEe--ecccc-ccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC-EEEEEeC
Confidence                111122233333  01111 3334444455568888877653     3334443 3477889999844 6666665


Q ss_pred             CCcEEEEECCCCeEEEEeecCCc------------ceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799          260 DCTIKVWETTQGKLIRELKGHGH------------WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (456)
Q Consensus       260 dg~i~iwd~~~~~~~~~~~~~~~------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (456)
                      ++ ..+.|+.++.....+.....            ++..+...                                     
T Consensus       157 ~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------  198 (275)
T PF00780_consen  157 KG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-------------------------------------  198 (275)
T ss_pred             Cc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-------------------------------------
Confidence            44 88899987665443321111            11111111                                     


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCc-cccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecc
Q 012799          328 APERLVSGSDDFTMFLWEPAVSKQPK-TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (456)
Q Consensus       328 ~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  401 (456)
                      ++++|++ . |..-.+.| ..+.... ..+.- ...+.++++.  ..||+..+. +.|.||++.++++++++...
T Consensus       199 ~~e~Ll~-~-~~~g~fv~-~~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  199 DNEFLLC-Y-DNIGVFVN-KNGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             CceEEEE-e-cceEEEEc-CCCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence            1233443 2 23333334 2232222 12222 2345566663  457777665 55999999999999988754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.43  E-value=2e-05  Score=71.94  Aligned_cols=76  Identities=30%  Similarity=0.463  Sum_probs=65.2

Q ss_pred             CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  183 (456)
                      .....|.|++++|+.+.|+.|+.||+|.+||...+...  +....-.++.++|+|+|..+++|+..|.+.+||+.-+.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            57788999999999999999999999999998765333  33355668999999999999999999999999986543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.42  E-value=0.00018  Score=61.54  Aligned_cols=177  Identities=19%  Similarity=0.234  Sum_probs=117.6

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEE-----CCCcEEEEeCC-CCcceeEEecCCCCEEEEEEcCCCCEEEEEe-----
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGS-----GDTTVRLWDLN-TQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-----  169 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~-----~d~~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-----  169 (456)
                      -+.|.||      -.||+||++|++.-     ..|.|-|||.. +-+.+.++..|.-....+.+.|||+.|+++-     
T Consensus        49 gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~T  122 (305)
T PF07433_consen   49 GRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIET  122 (305)
T ss_pred             CCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCcc
Confidence            4567788      68999999999863     45789999998 5667778888877788899999998777752     


Q ss_pred             -------------CCCeEEEEeCCCCCCccc-cc--cCcccceEEEEecccccCCCCCEEEEEeCCCc-------EEEEE
Q 012799          170 -------------KAGELQCWDPQTGKPSGN-PL--SGHKKWITGISWEPVHLNAPCRRFVSASKDGD-------ARIWD  226 (456)
Q Consensus       170 -------------~dg~i~vwd~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~-------i~iwd  226 (456)
                                   .+-++...|..+|+.+.+ .+  .-|...+..+++.+     +|..++..-..|.       +-+++
T Consensus       123 hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-----~G~V~~a~Q~qg~~~~~~PLva~~~  197 (305)
T PF07433_consen  123 HPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-----DGTVAFAMQYQGDPGDAPPLVALHR  197 (305)
T ss_pred             CcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-----CCcEEEEEecCCCCCccCCeEEEEc
Confidence                         123455666677765443 23  33666788888877     6655555443332       33333


Q ss_pred             CCCCeEEEEe-------cCcCccEEEEEeCCCC-eE-EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCc
Q 012799          227 VSLRKCVICL-------SGHTLAVTCVKWGGDG-VI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE  292 (456)
Q Consensus       227 ~~~~~~~~~~-------~~~~~~v~~~~~~~~~-~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  292 (456)
                      ...  .+..+       ..-...+-+|++++++ .+ +++=..|.+.+||..+++.+.....  ..+..++..++
T Consensus       198 ~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~  268 (305)
T PF07433_consen  198 RGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDD  268 (305)
T ss_pred             CCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCC
Confidence            222  22222       1235679999999998 44 4455577899999999988876643  23445554443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.42  E-value=0.00068  Score=62.25  Aligned_cols=61  Identities=15%  Similarity=0.298  Sum_probs=49.4

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  392 (456)
                      .+.++.|+.||.|.+||......   ......-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus       271 E~kLvlGC~DgSiiLyD~~~~~t---~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  271 EDKLVLGCEDGSIILYDTTRGVT---LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cceEEEEecCCeEEEEEcCCCee---eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            66799999999999999654422   23334456789999999999999999999999997643

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.40  E-value=0.00038  Score=56.97  Aligned_cols=122  Identities=19%  Similarity=0.134  Sum_probs=85.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc
Q 012799          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL  241 (456)
Q Consensus       162 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  241 (456)
                      ..+++.|+..+.+.--|..+|+.......+..-+-..+.        -|++++.|...|.+++.+.+++.....+.....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--------vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~   94 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--------VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET   94 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--------ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence            457778888999999999999876544433332222222        346799999999999999999987776643322


Q ss_pred             cEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecC
Q 012799          242 AVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST  291 (456)
Q Consensus       242 ~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  291 (456)
                      --......+++ .+..|+.|++.+..|.++...+...+-.+....+-++.+
T Consensus        95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen   95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence            22223445566 999999999999999999888888765554444444444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.37  E-value=1.2e-05  Score=75.94  Aligned_cols=111  Identities=15%  Similarity=0.309  Sum_probs=86.3

Q ss_pred             CEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC
Q 012799          152 WVLCIAWSADGKHLVSGSK----AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (456)
Q Consensus       152 ~v~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  227 (456)
                      .-+-.+|+|...++++++.    .|.|.||- ++|++....  ...-.+++++|+|     ..-.|+.|-.-|.+.+|..
T Consensus        17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHp-----e~~vLa~gwe~g~~~v~~~   88 (1416)
T KOG3617|consen   17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHP-----EEFVLAQGWEMGVSDVQKT   88 (1416)
T ss_pred             cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccCh-----HHHHHhhccccceeEEEec
Confidence            3345678998888888764    57888884 566654311  1223456799999     4456778888899999999


Q ss_pred             CCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCC
Q 012799          228 SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ  270 (456)
Q Consensus       228 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~  270 (456)
                      .+.+.-.....|..+|..+.|+++| .++++..-|.+.+|....
T Consensus        89 ~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   89 NTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             CCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            8887777778899999999999999 999999999999998763

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.36  E-value=0.00013  Score=67.99  Aligned_cols=140  Identities=14%  Similarity=0.149  Sum_probs=102.9

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE-ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  185 (456)
                      |...|.--+++..+++++.|+.-|.+++|+-..++....- .+..+.+.....+++..++|.|+..|.|.++.++.+.+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            4455666667778999999999999999997766544332 234556677788888999999999999999998875432


Q ss_pred             cc-----cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC----eEEEEecCcCccEEEEEeCCC
Q 012799          186 GN-----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR----KCVICLSGHTLAVTCVKWGGD  251 (456)
Q Consensus       186 ~~-----~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~  251 (456)
                      ..     .-..|...|++++|++     ++..+++|...|+|..-.+.+.    .....+....+.|..+.+...
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~-----~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~  181 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSK-----NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQS  181 (726)
T ss_pred             cceeeccccccCCceEEEEEecc-----cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccc
Confidence            21     1234778899999999     9999999999999999888762    112223334566777776644

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.35  E-value=2.1e-07  Score=84.71  Aligned_cols=200  Identities=16%  Similarity=0.293  Sum_probs=129.2

Q ss_pred             CCCCEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCCCc-cccccCcccceEEEEecccccCCCCCEEEEEe----CCCc
Q 012799          149 HKNWVLCIAWSADG--KHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----KDGD  221 (456)
Q Consensus       149 ~~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~----~dg~  221 (456)
                      ....+.|++++.+.  ..++.|..+|.|.+-..+...-. .....++....++++|.+.    |.+.||+|-    .|..
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL----Dtn~LAagldkhrnds~  130 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL----DTNHLAAGLDKHRNDSS  130 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccc----cHHHHHhhhhhhcccCC
Confidence            34557777776543  47788999999999887654332 4456778889999999985    556677763    3678


Q ss_pred             EEEEECCCC--eEE--EEecC-cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCe-EEEEeecCCcceEEEEecCcce
Q 012799          222 ARIWDVSLR--KCV--ICLSG-HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYA  294 (456)
Q Consensus       222 i~iwd~~~~--~~~--~~~~~-~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~  294 (456)
                      +.|||+.++  .+.  ..+.+ ......+++|..+. .+++|.....+.++|++... ....+  ....+..+.+.|-  
T Consensus       131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~--  206 (783)
T KOG1008|consen  131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPF--  206 (783)
T ss_pred             ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCC--
Confidence            999999876  221  11222 23445578888666 77788888899999998432 11111  1223444555542  


Q ss_pred             eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEe-cCCCCCCccccccccc----cEeEEEEC
Q 012799          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE-PAVSKQPKTRMTGHQQ----LVNHVYFS  369 (456)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~----~v~~~~~s  369 (456)
                                                       .+++++ ...||.|.+|| .++.+.+...+...+.    .+..++|+
T Consensus       207 ---------------------------------~~nY~c-s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc  252 (783)
T KOG1008|consen  207 ---------------------------------SPNYFC-SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC  252 (783)
T ss_pred             ---------------------------------CCCcee-ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence                                             134444 45599999999 5555555544433333    48999999


Q ss_pred             CCC-CEEEEEEC-CCcEEEEeCC
Q 012799          370 PDG-QWVASASF-DKSIKLWNGT  390 (456)
Q Consensus       370 p~~-~~l~s~~~-dg~i~iwd~~  390 (456)
                      |.. ..+++.+. .++|+++|+.
T Consensus       253 Ptrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  253 PTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cCCcchhhhhccCcceEEEeccc
Confidence            942 24555554 4789999975

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.33  E-value=0.0015  Score=62.45  Aligned_cols=202  Identities=17%  Similarity=0.137  Sum_probs=112.8

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCC-CCEE---E-------EEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVL---C-------IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~-~~v~---~-------~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      +..++.++.++.|.-.|..+++.+.++.... ..+.   +       +++  .+..++.++.|+.+.-.|.++|+.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4466677778899999999999887765221 1111   1       122  2346777888999999999999876533


Q ss_pred             ccCcccceEEEEecccccCCCCCEEEEEe------CCCcEEEEECCCCeEEEEecCcCc---------------------
Q 012799          189 LSGHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLSGHTL---------------------  241 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~---------------------  241 (456)
                      .......-..+.-.|.-   .+..++++.      .+|.|..+|.++++.+..+..-..                     
T Consensus       147 ~~~~~~~~~~~tssP~v---~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw  223 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLV---VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW  223 (527)
T ss_pred             ccccccccccccCCcEE---ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence            22111100111112211   123455543      268999999999988776532110                     


Q ss_pred             ----------cE-EEEEeCCCC-eEEEEeCC-----C-----------cEEEEECCCCeEEEEeecCCcceEEEEecCcc
Q 012799          242 ----------AV-TCVKWGGDG-VIYTGSQD-----C-----------TIKVWETTQGKLIRELKGHGHWVNSLALSTEY  293 (456)
Q Consensus       242 ----------~v-~~~~~~~~~-~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~  293 (456)
                                .+ ..++++++. +++.+..+     +           .|.-.|+++|+....++.....+.........
T Consensus       224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p  303 (527)
T TIGR03075       224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM  303 (527)
T ss_pred             CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence                      01 123556644 55554422     2           56667888888777776544433332221111


Q ss_pred             eeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC
Q 012799          294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK  350 (456)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  350 (456)
                      .+.....+.                        .....++.+..+|.+++.|.++++
T Consensus       304 ~l~d~~~~G------------------------~~~~~v~~~~K~G~~~vlDr~tG~  336 (527)
T TIGR03075       304 ILFDLKKDG------------------------KPRKLLAHADRNGFFYVLDRTNGK  336 (527)
T ss_pred             EEEEeccCC------------------------cEEEEEEEeCCCceEEEEECCCCc
Confidence            111000000                        011357889999999999966554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.30  E-value=0.0004  Score=65.31  Aligned_cols=64  Identities=14%  Similarity=0.053  Sum_probs=43.2

Q ss_pred             CCCCEEE-EEeCCCcEEEEecCCCCCCc-----------cccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799          327 NAPERLV-SGSDDFTMFLWEPAVSKQPK-----------TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (456)
Q Consensus       327 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~-----------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  391 (456)
                      +++.+++ ++..+.++.+.|+.+.....           ....- .......+|.++|+...|--.|..|..|++..
T Consensus       330 PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        330 PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            3355555 45568999999987644211           11111 12245678999999888888999999999876

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.20  E-value=0.0023  Score=54.07  Aligned_cols=184  Identities=11%  Similarity=0.155  Sum_probs=105.4

Q ss_pred             cccCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCcceeEEecC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799          103 TIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  180 (456)
                      .+.+-.+.+..++|+|+.+ ++++....+.|...+.+ |+.+..+.-. .+-.-.|++..++.++++.-+++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4566667799999999755 55566677888888864 6777766533 3567889998888777777678999999884


Q ss_pred             CCCCcc----------ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC---CeEEEE--e------cCc
Q 012799          181 TGKPSG----------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---RKCVIC--L------SGH  239 (456)
Q Consensus       181 ~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~--~------~~~  239 (456)
                      ......          .....+...+..++|.|     .++.|+.+-...-..+|.+..   ...+..  .      ...
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-----~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-----KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEET-----TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcC-----CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            432110          01123456689999999     667777777777777776653   111111  1      123


Q ss_pred             CccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCC---------cceEEEEecCcc
Q 012799          240 TLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHG---------HWVNSLALSTEY  293 (456)
Q Consensus       240 ~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~~~~~  293 (456)
                      ...+.+++++|..  .++....+..|..+| .+|+.+..+.-..         .....|++.+++
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G  233 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG  233 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence            4568899999865  666677788899999 6777766654332         235567777663

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.20  E-value=0.0012  Score=59.94  Aligned_cols=178  Identities=22%  Similarity=0.264  Sum_probs=97.2

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE-ec-------C---------CCCEEEEEEcCCCCEEEEEeC
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TG-------H---------KNWVLCIAWSADGKHLVSGSK  170 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~-------~---------~~~v~~~~~~~~~~~l~s~~~  170 (456)
                      ...+....|||+|+.+|... ++.|.+++..++...... .+       -         -+.-..+.||||+++||....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            67788999999999999885 578999998776433211 11       0         122356889999999987643


Q ss_pred             CC------------------------------------eEEEEeCCCCCCccccc----cCcccceEEEEecccccCCCC
Q 012799          171 AG------------------------------------ELQCWDPQTGKPSGNPL----SGHKKWITGISWEPVHLNAPC  210 (456)
Q Consensus       171 dg------------------------------------~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~  210 (456)
                      |.                                    .+.++|+.+++......    ......+..+.|.+     ++
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-----d~  195 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-----DG  195 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-----TT
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-----CC
Confidence            31                                    24445555554321111    12345577888877     66


Q ss_pred             CEEEEEeC--C---CcEEEEECCCCeEEEEecC-cCc---cEEEEEeC-CCC--eEEEEeCCCc--EEEEECCCCeEEEE
Q 012799          211 RRFVSASK--D---GDARIWDVSLRKCVICLSG-HTL---AVTCVKWG-GDG--VIYTGSQDCT--IKVWETTQGKLIRE  276 (456)
Q Consensus       211 ~~l~~~~~--d---g~i~iwd~~~~~~~~~~~~-~~~---~v~~~~~~-~~~--~l~~~~~dg~--i~iwd~~~~~~~~~  276 (456)
                      ..++..-.  +   ..+.+.|..++.+...... ...   .-....+. +++  .+.....+|.  |.+++...+.. +.
T Consensus       196 ~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~  274 (353)
T PF00930_consen  196 KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQ  274 (353)
T ss_dssp             EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EE
T ss_pred             cEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-ec
Confidence            64444322  2   2356667766544333221 111   12234443 555  5666667775  55667666553 34


Q ss_pred             eecCCcceEE-EEecCc
Q 012799          277 LKGHGHWVNS-LALSTE  292 (456)
Q Consensus       277 ~~~~~~~i~~-~~~~~~  292 (456)
                      +....-.|.. +.++++
T Consensus       275 lT~G~~~V~~i~~~d~~  291 (353)
T PF00930_consen  275 LTSGDWEVTSILGWDED  291 (353)
T ss_dssp             SS-SSS-EEEEEEEECT
T ss_pred             cccCceeecccceEcCC
Confidence            4444445544 455555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.17  E-value=6.4e-05  Score=69.86  Aligned_cols=117  Identities=17%  Similarity=0.202  Sum_probs=88.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  228 (456)
                      +...|.--++...+++++.|+.-|.+.+|+-..++.......+..+.+.....++     +..++|+|+..|.|.++-+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-----~e~lvAagt~~g~V~v~ql~  106 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-----VEYLVAAGTASGRVSVFQLN  106 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-----hhHhhhhhcCCceEEeehhh
Confidence            4455555566678899999999999999998887765533334445555666666     66788889999999999876


Q ss_pred             CCeEE---E--Ee-cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCC
Q 012799          229 LRKCV---I--CL-SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ  270 (456)
Q Consensus       229 ~~~~~---~--~~-~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~  270 (456)
                      .+.+.   .  .. +.|...|++++|++++ .+++|...|.|..-.+.+
T Consensus       107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            54321   1  11 2377899999999999 999999999999888876

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.5e-05  Score=72.87  Aligned_cols=95  Identities=19%  Similarity=0.272  Sum_probs=81.5

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL-CIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  186 (456)
                      .-.|.-+.|+|.-.++|++..+|.|.+..++ .+.+.++.-|...++ +++|.|||+.||.|-.||+|++.|.+++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3457789999999999999999999999988 777888886777777 99999999999999999999999999998776


Q ss_pred             ccccCcccceEEEEecc
Q 012799          187 NPLSGHKKWITGISWEP  203 (456)
Q Consensus       187 ~~~~~~~~~v~~~~~~~  203 (456)
                      .........|.++-|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            54555667788888865

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.12  E-value=0.0018  Score=59.97  Aligned_cols=143  Identities=14%  Similarity=0.099  Sum_probs=78.2

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  186 (456)
                      ..-....+.++|+|++++.+ .||.-.|+.....+...     .+.-...+|.+.+ .+|+-...++|.++.--+.....
T Consensus        31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-
T ss_pred             CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccce
Confidence            34457789999999998885 57788888743333222     2345668898854 56766668889996332222211


Q ss_pred             ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEE
Q 012799          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW  266 (456)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iw  266 (456)
                      .....  ..+..+-        .|..|...+. +.|.+||..+++.+..+...  +|..+.|++++.+++-..+..+.++
T Consensus       104 ~i~~~--~~~~~If--------~G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il  170 (443)
T PF04053_consen  104 SIKLP--FSVEKIF--------GGNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYIL  170 (443)
T ss_dssp             ----S--S-EEEEE---------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEE
T ss_pred             EEcCC--cccceEE--------cCcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEE
Confidence            11111  1233332        2456666655 48999999999999998643  4899999999944444445567777


Q ss_pred             ECC
Q 012799          267 ETT  269 (456)
Q Consensus       267 d~~  269 (456)
                      +..
T Consensus       171 ~~~  173 (443)
T PF04053_consen  171 KYN  173 (443)
T ss_dssp             EE-
T ss_pred             Eec
Confidence            654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.07  E-value=0.00047  Score=64.86  Aligned_cols=145  Identities=12%  Similarity=0.063  Sum_probs=89.1

Q ss_pred             EECCCCCeEEE-EECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcc
Q 012799          115 AFSPDGRQLAS-GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK  193 (456)
Q Consensus       115 ~~s~~~~~l~~-~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  193 (456)
                      =++|||+.+.. .-..+.+.+.|.++.+...++.-. +....++++|+|+++++.+.+.       +.+..+........
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNs-------E~G~tl~em~a~e~  270 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNS-------EEGVTLAEMMAAER  270 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCc-------ccCcceeeeccccC
Confidence            35678876543 335577888898887776666532 2456789999999998886432       11221111111111


Q ss_pred             cceEEEEeccc---ccCCCCCEEEEEeCCCcEEEEECCC-----CeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcE
Q 012799          194 KWITGISWEPV---HLNAPCRRFVSASKDGDARIWDVSL-----RKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTI  263 (456)
Q Consensus       194 ~~v~~~~~~~~---~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i  263 (456)
                      .  ..+.|...   ....+|++...  .++.|.+.|..+     .+.+..+. -......+.++|||  .++++..+.++
T Consensus       271 d--~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tV  345 (635)
T PRK02888        271 D--WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTV  345 (635)
T ss_pred             c--eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcE
Confidence            1  23333331   12236666665  357899999988     34444443 45566789999999  44555668999


Q ss_pred             EEEECCCCe
Q 012799          264 KVWETTQGK  272 (456)
Q Consensus       264 ~iwd~~~~~  272 (456)
                      .++|+.+.+
T Consensus       346 SVIDv~k~k  354 (635)
T PRK02888        346 TVIDVRKLD  354 (635)
T ss_pred             EEEEChhhh
Confidence            999998754

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.07  E-value=0.00077  Score=62.06  Aligned_cols=166  Identities=23%  Similarity=0.260  Sum_probs=103.8

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEE---CC-CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCCCe
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGS---GD-TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGE  173 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~---~d-~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~  173 (456)
                      ...+.+..-...+..-+|+|+++.++..+   .. ..+.++++++++....+. ..+.-...+|+|||+.|+.+ ..||.
T Consensus       183 ~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         183 YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCC
Confidence            33445555667788889999998776553   22 369999999887665554 44445667999999987755 45665


Q ss_pred             --EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC-C--cEEEEECCCCeEEEEecCcCccEEEEEe
Q 012799          174 --LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-G--DARIWDVSLRKCVICLSGHTLAVTCVKW  248 (456)
Q Consensus       174 --i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~  248 (456)
                        |.+.|+..+....  +....+.-..-.|+|     +|+.++..+.. |  .|.++|.+...... +......-..-.|
T Consensus       262 ~~iy~~dl~~~~~~~--Lt~~~gi~~~Ps~sp-----dG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~  333 (425)
T COG0823         262 PDIYLMDLDGKNLPR--LTNGFGINTSPSWSP-----DGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVW  333 (425)
T ss_pred             ccEEEEcCCCCccee--cccCCccccCccCCC-----CCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccC
Confidence              6666777666332  333333334666777     99998877653 3  46667776665432 2222222226788


Q ss_pred             CCCC-eEEEEeC-CCc--EEEEECCCCeE
Q 012799          249 GGDG-VIYTGSQ-DCT--IKVWETTQGKL  273 (456)
Q Consensus       249 ~~~~-~l~~~~~-dg~--i~iwd~~~~~~  273 (456)
                      +|+| +++..+. +|.  |.+.|+.++..
T Consensus       334 SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         334 SPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             CCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence            9999 4444433 454  66666665543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.06  E-value=0.0065  Score=52.98  Aligned_cols=241  Identities=18%  Similarity=0.196  Sum_probs=130.7

Q ss_pred             EEEECCCCCeEEEEE----------CCCcEEEEeCCCCcceeEEe--cC-C----CCEEEEEEcCCCCEEEEEe--CCCe
Q 012799          113 SVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCT--GH-K----NWVLCIAWSADGKHLVSGS--KAGE  173 (456)
Q Consensus       113 ~~~~s~~~~~l~~~~----------~d~~v~vwd~~~~~~~~~~~--~~-~----~~v~~~~~~~~~~~l~s~~--~dg~  173 (456)
                      .+..+|+++.+++++          ..-.|.+||..+-.+...+.  .. .    .....++++.|+++++...  --..
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            367899999888753          23369999999987666443  21 1    1223467888999888754  3457


Q ss_pred             EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC-CCeEEEEe----cCcCccE-EEEE
Q 012799          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVICL----SGHTLAV-TCVK  247 (456)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~----~~~~~~v-~~~~  247 (456)
                      |.|-|+..++.+..+-.  .+  ....| |.    ..+.|.+-+.||.+.-..+. .|+.....    .....++ ..-+
T Consensus       120 VtVVDl~~~kvv~ei~~--PG--C~~iy-P~----~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~  190 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDT--PG--CWLIY-PS----GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPA  190 (342)
T ss_dssp             EEEEETTTTEEEEEEEG--TS--EEEEE-EE----ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--E
T ss_pred             EEEEECCCCceeeeecC--CC--EEEEE-ec----CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccc
Confidence            99999988776542211  11  11122 32    22468888999999988887 44443221    1112222 2223


Q ss_pred             eCC-CCeEEEEeCCCcEEEEECCCCeEEE--EeecCC----------cceEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799          248 WGG-DGVIYTGSQDCTIKVWETTQGKLIR--ELKGHG----------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (456)
Q Consensus       248 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (456)
                      +.. .+.++-.+.+|.|+-.|+.......  .+....          +.-.-+++++.                      
T Consensus       191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~----------------------  248 (342)
T PF06433_consen  191 YSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA----------------------  248 (342)
T ss_dssp             EETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT----------------------
T ss_pred             eECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc----------------------
Confidence            333 3356667888888888877654221  111000          00111222221                      


Q ss_pred             HHHHhhhhhccCCCCCEEEEEe--------CCC--cEEEEecCCCCCCccccccccccEeEEEECCCCC-EEEEE-ECCC
Q 012799          315 KAALERYNKIKGNAPERLVSGS--------DDF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASA-SFDK  382 (456)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~~--------~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~-~~dg  382 (456)
                                    .++|+.--        .|+  .|.++|+.+.+...+ +. -..++.+|+++.+.+ +|++. ..++
T Consensus       249 --------------~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~R-i~-l~~~~~Si~Vsqd~~P~L~~~~~~~~  312 (342)
T PF06433_consen  249 --------------SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVAR-IP-LEHPIDSIAVSQDDKPLLYALSAGDG  312 (342)
T ss_dssp             --------------TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEE-EE-EEEEESEEEEESSSS-EEEEEETTTT
T ss_pred             --------------cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEE-Ee-CCCccceEEEccCCCcEEEEEcCCCC
Confidence                          11222211        111  366677655443322 32 134588999998765 56554 4579


Q ss_pred             cEEEEeCCCCeEEEEEec
Q 012799          383 SIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       383 ~i~iwd~~~~~~~~~~~~  400 (456)
                      .+.+||..+|+++..++.
T Consensus       313 ~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  313 TLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEETTT--EEEEE--
T ss_pred             eEEEEeCcCCcEEeehhc
Confidence            999999999999988873

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.05  E-value=1.6e-06  Score=79.20  Aligned_cols=262  Identities=16%  Similarity=0.163  Sum_probs=154.3

Q ss_pred             cccEEEEEECCC--CCeEEEEECCCcEEEEeCCCCcc--eeEEecCCCCEEEEEEcC-CCCEEEEEe----CCCeEEEEe
Q 012799          108 TEAVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSA-DGKHLVSGS----KAGELQCWD  178 (456)
Q Consensus       108 ~~~V~~~~~s~~--~~~l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~s~~----~dg~i~vwd  178 (456)
                      ...+.|+++..+  ...++.|..+|.|-+-......-  .....++....++++|++ |.+.||+|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            445667776654  35788999999999988764322  233457888999999998 666777763    245799999


Q ss_pred             CCCCC--Ccc--ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC-CCe
Q 012799          179 PQTGK--PSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGV  253 (456)
Q Consensus       179 ~~~~~--~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~  253 (456)
                      +.++-  +..  ....+......+++|..     +.+.+++|.....+.++|++..... ...-....+..+.++| .+-
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlr-----d~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~n  209 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLR-----DTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPN  209 (783)
T ss_pred             cccccCCCccccccccccccCcccccccc-----Ccchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCC
Confidence            98872  211  11112334455777775     7788999999999999998732211 1111233556677777 444


Q ss_pred             EEEEeCCCcEEEEE-CCCC-eEEEEeecCC----cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799          254 IYTGSQDCTIKVWE-TTQG-KLIRELKGHG----HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (456)
Q Consensus       254 l~~~~~dg~i~iwd-~~~~-~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (456)
                      .++...||.|.+|| .+.- .++..+....    ..+..++|.|..                                  
T Consensus       210 Y~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr----------------------------------  255 (783)
T KOG1008|consen  210 YFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR----------------------------------  255 (783)
T ss_pred             ceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC----------------------------------
Confidence            45556699999999 3332 2333332222    247888888862                                  


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCc----------c---ccc--cccccEeEEEECCCC--CEEEEEECCCcEEEEeCC
Q 012799          328 APERLVSGSDDFTMFLWEPAVSKQPK----------T---RMT--GHQQLVNHVYFSPDG--QWVASASFDKSIKLWNGT  390 (456)
Q Consensus       328 ~~~~l~~~~~dg~i~iwd~~~~~~~~----------~---~~~--~~~~~v~~~~~sp~~--~~l~s~~~dg~i~iwd~~  390 (456)
                      .+...+..-..++|+.+|+.......          .   ...  +.-+.|.+..|++..  ....++-..-.+.-+++.
T Consensus       256 tglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~  335 (783)
T KOG1008|consen  256 TGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH  335 (783)
T ss_pred             cchhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence            12223444556789999875322110          0   011  112457777777744  224444444444444443


Q ss_pred             CCeEEEEEecccccEEEEEeeee
Q 012799          391 TGKFVAVFRGHVGPVYQIRFELI  413 (456)
Q Consensus       391 ~~~~~~~~~~~~~~v~~i~~~~~  413 (456)
                      ..    .+..|..+.+.+.|...
T Consensus       336 e~----~~pa~s~p~n~L~~s~~  354 (783)
T KOG1008|consen  336 EE----VIPASSNPYNDLIFSFK  354 (783)
T ss_pred             hh----eecccCCCcccchhhhc
Confidence            21    23344557777765543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.05  E-value=0.0049  Score=57.02  Aligned_cols=64  Identities=13%  Similarity=0.181  Sum_probs=42.9

Q ss_pred             EEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       332 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                      .+....++.+.+.+-.....    + ...+++..+++||+|++||.-..+|.+.+.+..-.+.+..+..
T Consensus       193 ~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~  256 (410)
T PF04841_consen  193 EILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT  256 (410)
T ss_pred             EEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence            44445556666554222111    1 2246799999999999999999999999998665555555543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.04  E-value=0.0014  Score=58.73  Aligned_cols=178  Identities=12%  Similarity=0.084  Sum_probs=105.6

Q ss_pred             eEEEEeCCCCCCccccccCcccceEEEEecccccCC--CCCEEEEEeC----------CCcEEEEECCCC----eEEEEe
Q 012799          173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA--PCRRFVSASK----------DGDARIWDVSLR----KCVICL  236 (456)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~----~~~~~~  236 (456)
                      .|++.|..+.+.+..........+.+++........  ...++++|+.          .|.|.++++...    ..+..+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            577777776665443333334445555543322111  2457776653          288999999884    122222


Q ss_pred             --cCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCe-EEEEeec-CCcceEEEEecCcceeeeccccCCCCccCChHH
Q 012799          237 --SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK-LIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (456)
Q Consensus       237 --~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (456)
                        ....++|++++-. ++.++++ .++.|.+|++...+ ....-.. ....+.++...                      
T Consensus        83 ~~~~~~g~V~ai~~~-~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~----------------------  138 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF----------------------  138 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE----------------------
T ss_pred             EEEeecCcceEhhhh-CCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc----------------------
Confidence              2357889999877 4464444 45889999998877 4333221 22345555544                      


Q ss_pred             HHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc--ccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                                      +++++.|.....+.++...........+  ......++++.|-++++.++.+..+|.+.++...
T Consensus       139 ----------------~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  139 ----------------KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             ----------------TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ----------------ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence                            3468888888888877544322212212  2234568888888777799999999999999765

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.04  E-value=0.0071  Score=52.74  Aligned_cols=258  Identities=15%  Similarity=0.087  Sum_probs=143.6

Q ss_pred             CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCCCccccccCc--ccc--
Q 012799          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTGKPSGNPLSGH--KKW--  195 (456)
Q Consensus       130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~--~~~--  195 (456)
                      +.+.|+|.++++.+-.+..--  .-.+..+|+++.+++++          +.-.|.+||..+-.....+....  ...  
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            479999999988777665322  33466789999888753          33469999999876543222211  111  


Q ss_pred             --eEEEEecccccCCCCCEEEEEe--CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECC-C
Q 012799          196 --ITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-Q  270 (456)
Q Consensus       196 --v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~-~  270 (456)
                        .....++.     ++++++...  --..|.|.|+..++.+..+.- .+ ...+--.++..+.+-|.||.+.-..+. .
T Consensus        95 ~~~~~~~ls~-----dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG-C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~  167 (342)
T PF06433_consen   95 PYKNMFALSA-----DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG-CWLIYPSGNRGFSMLCGDGSLLTVTLDAD  167 (342)
T ss_dssp             --GGGEEE-T-----TSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TS-EEEEEEEETTEEEEEETTSCEEEEEETST
T ss_pred             ccccceEEcc-----CCcEEEEEccCCCCeEEEEECCCCceeeeecC-CC-EEEEEecCCCceEEEecCCceEEEEECCC
Confidence              11122233     666666543  345678888888887766642 11 112211223378899999999999887 4


Q ss_pred             CeEEEEeecCCcceEEEEecCcce-eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC
Q 012799          271 GKLIRELKGHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS  349 (456)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  349 (456)
                      |+...+..       . .|.++.. +...                        ......+..++.-+.+|.|+-.|+...
T Consensus       168 Gk~~~~~t-------~-~F~~~~dp~f~~------------------------~~~~~~~~~~~F~Sy~G~v~~~dlsg~  215 (342)
T PF06433_consen  168 GKEAQKST-------K-VFDPDDDPLFEH------------------------PAYSRDGGRLYFVSYEGNVYSADLSGD  215 (342)
T ss_dssp             SSEEEEEE-------E-ESSTTTS-B-S--------------------------EEETTTTEEEEEBTTSEEEEEEETTS
T ss_pred             CCEeEeec-------c-ccCCCCcccccc------------------------cceECCCCeEEEEecCCEEEEEeccCC
Confidence            55542211       1 2222210 0000                        000012345666788888888886554


Q ss_pred             CCCc----cccc-------cccccEeEEEECCCCCEEEEEEC---CC-------cEEEEeCCCCeEEEEEecccccEEEE
Q 012799          350 KQPK----TRMT-------GHQQLVNHVYFSPDGQWVASASF---DK-------SIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       350 ~~~~----~~~~-------~~~~~v~~~~~sp~~~~l~s~~~---dg-------~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      ....    ....       -..+.-.-+++++..+.|++-..   +|       .|-++|+.+++.+..+.. ..++.++
T Consensus       216 ~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si  294 (342)
T PF06433_consen  216 SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSI  294 (342)
T ss_dssp             SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEE
T ss_pred             cccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceE
Confidence            3111    0000       00112334678776555554322   22       478889999999998874 3456677


Q ss_pred             EeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEe-eCCCceEEC
Q 012799          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSG-SKDSTLKVT  456 (456)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~-s~Dg~v~iW  456 (456)
                                                 +.+.|.+ +|++. ..++.+.|+
T Consensus       295 ---------------------------~Vsqd~~P~L~~~~~~~~~l~v~  317 (342)
T PF06433_consen  295 ---------------------------AVSQDDKPLLYALSAGDGTLDVY  317 (342)
T ss_dssp             ---------------------------EEESSSS-EEEEEETTTTEEEEE
T ss_pred             ---------------------------EEccCCCcEEEEEcCCCCeEEEE
Confidence                                       6677765 56554 357777763

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.04  E-value=0.011  Score=56.60  Aligned_cols=154  Identities=15%  Similarity=0.163  Sum_probs=88.8

Q ss_pred             CeEEEEECCCcEEEEeCCCCcceeEEecCCCC-EEEEEEcC---CCCEEEEEe------CCCeEEEEeCCCCCCcccccc
Q 012799          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW-VLCIAWSA---DGKHLVSGS------KAGELQCWDPQTGKPSGNPLS  190 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~---~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~  190 (456)
                      ..++.++.|+.+.-.|..+++.+......... -..+.-+|   ++ .++.+.      .+|.|..+|.++|+.+.+...
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            45677788999999999999988765421100 01111122   44 455543      268999999999986543221


Q ss_pred             Ccccc----------------------e----EEEEecccccCCCCCEEEEEeCC-----C-----------cEEEEECC
Q 012799          191 GHKKW----------------------I----TGISWEPVHLNAPCRRFVSASKD-----G-----------DARIWDVS  228 (456)
Q Consensus       191 ~~~~~----------------------v----~~~~~~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~  228 (456)
                      .....                      .    ..-.|.+..+++...+++.+..+     +           .|.-.|++
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~  279 (527)
T TIGR03075       200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD  279 (527)
T ss_pred             cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence            11100                      0    00112222222244555555421     2           57778899


Q ss_pred             CCeEEEEecCcCccE---------EEEEeCCCC----eEEEEeCCCcEEEEECCCCeEEE
Q 012799          229 LRKCVICLSGHTLAV---------TCVKWGGDG----VIYTGSQDCTIKVWETTQGKLIR  275 (456)
Q Consensus       229 ~~~~~~~~~~~~~~v---------~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~  275 (456)
                      +++....++.....+         .-+....+|    .++.+..+|.+++.|.++|+.+.
T Consensus       280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            999887775422221         222222344    56788999999999999998863

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.03  E-value=0.0027  Score=57.90  Aligned_cols=205  Identities=15%  Similarity=0.174  Sum_probs=102.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC--
Q 012799          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL--  229 (456)
Q Consensus       152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--  229 (456)
                      .|+.+.|.++...|++|...|.|.||.+...+.-.   ......-....+.+...           .++.-.+-|+..  
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~---~~~~~~~~~~~~~~~~~-----------~~~~~~l~di~~r~   68 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG---NREQPPDLDYNFRRFSL-----------NNSPGKLTDISDRA   68 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S--G-----------GGSS-SEEE-GGG-
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC---ccCCCcccCcccccccc-----------cCCCcceEEehhhC
Confidence            58899999999999999999999999887554321   00111111222222111           111222333321  


Q ss_pred             -------CeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeec--------CCcceEEEEecCcce
Q 012799          230 -------RKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG--------HGHWVNSLALSTEYA  294 (456)
Q Consensus       230 -------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~i~~~~~~~~~~  294 (456)
                             -.+...+....++|++++.+.-|.+++|..+|.+.+.|+|....+..-..        ....++++.|.-.. 
T Consensus        69 ~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~-  147 (395)
T PF08596_consen   69 PPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMT-  147 (395)
T ss_dssp             -TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred             CcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEe-
Confidence                   12334445568999999999888999999999999999998887766322        22346666655210 


Q ss_pred             eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCC-C-CCC----ccccccccccEeEEE-
Q 012799          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV-S-KQP----KTRMTGHQQLVNHVY-  367 (456)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~-~~~----~~~~~~~~~~v~~~~-  367 (456)
                           .+...                      ...-.+++|+..|.+.+|.+.- . ...    ......+.++|..+. 
T Consensus       148 -----~~~D~----------------------ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~  200 (395)
T PF08596_consen  148 -----LGGDG----------------------YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIP  200 (395)
T ss_dssp             ------TTSS----------------------SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEE
T ss_pred             -----cCCCc----------------------ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEE
Confidence                 00000                      0123588999999999998642 1 111    111123445555443 


Q ss_pred             ECCC-C--------------------CEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799          368 FSPD-G--------------------QWVASASFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       368 ~sp~-~--------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~  399 (456)
                      ++.+ |                    .+++++ .+..++++...+.+......
T Consensus       201 i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~~~~k~~~K~~  252 (395)
T PF08596_consen  201 INADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKPPKSKGAHKSF  252 (395)
T ss_dssp             EETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-
T ss_pred             EECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeCCCCcccceee
Confidence            3211 1                    134444 46679999988877655444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.00  E-value=0.012  Score=54.97  Aligned_cols=244  Identities=15%  Similarity=0.137  Sum_probs=126.5

Q ss_pred             ccEEEEEECCCCCeEEEE-ECCC----cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC-----------
Q 012799          109 EAVLSVAFSPDGRQLASG-SGDT----TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG-----------  172 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~-~~d~----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----------  172 (456)
                      ..+...+++|||+++|.+ +..|    .++++|+.+++.+...-... ....+.|.++++.|+....+.           
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            345578899999998866 3333    59999999997664321111 122399999988877665433           


Q ss_pred             eEEEEeCCCCCCccc-cccCcccc--eEEEEecccccCCCCCEEEEEeC---C-CcEEEEECCCC-----eEEEEecCcC
Q 012799          173 ELQCWDPQTGKPSGN-PLSGHKKW--ITGISWEPVHLNAPCRRFVSASK---D-GDARIWDVSLR-----KCVICLSGHT  240 (456)
Q Consensus       173 ~i~vwd~~~~~~~~~-~~~~~~~~--v~~~~~~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~-----~~~~~~~~~~  240 (456)
                      .|..|++.+...... .+......  ...+..++     ++++++....   + ..+++.|+..+     ..........
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-----d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~  277 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-----DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED  277 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-----TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-----cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence            378888776654311 22222222  45666666     8888775433   2 35788888764     2222222223


Q ss_pred             ccEEEEEeCCCCeEEEE---eCCCcEEEEECCCCeE---EEEeecCCc--ceEEEEecCcceeeeccccCCCCccCChHH
Q 012799          241 LAVTCVKWGGDGVIYTG---SQDCTIKVWETTQGKL---IRELKGHGH--WVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (456)
Q Consensus       241 ~~v~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (456)
                      +....+....+..++..   ...+.|...++.....   ...+..+..  .+..+....+                    
T Consensus       278 ~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--------------------  337 (414)
T PF02897_consen  278 GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD--------------------  337 (414)
T ss_dssp             S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT--------------------
T ss_pred             ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC--------------------
Confidence            33333444422222222   2235676777776542   223333332  3444444322                    


Q ss_pred             HHHHHHhhhhhccCCCCCEEEEEeCCC--cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEE--EEC--CCcEEE
Q 012799          313 MKKAALERYNKIKGNAPERLVSGSDDF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS--ASF--DKSIKL  386 (456)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s--~~~--dg~i~i  386 (456)
                                       .+++....++  .|+++++..+.........-.+.|..+...++++.+..  .|.  -+++.-
T Consensus       338 -----------------~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~  400 (414)
T PF02897_consen  338 -----------------YLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYR  400 (414)
T ss_dssp             -----------------EEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEE
T ss_pred             -----------------EEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEE
Confidence                             2244444444  57788866122222222222344566665665554332  222  257888


Q ss_pred             EeCCCCeEE
Q 012799          387 WNGTTGKFV  395 (456)
Q Consensus       387 wd~~~~~~~  395 (456)
                      ||+.+++..
T Consensus       401 ~d~~t~~~~  409 (414)
T PF02897_consen  401 YDLATGELT  409 (414)
T ss_dssp             EETTTTCEE
T ss_pred             EECCCCCEE
Confidence            999888753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.99  E-value=0.0073  Score=52.99  Aligned_cols=208  Identities=17%  Similarity=0.179  Sum_probs=120.9

Q ss_pred             EEEcCCCC-EEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 012799          156 IAWSADGK-HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI  234 (456)
Q Consensus       156 ~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  234 (456)
                      ..|.++.. ++.+--..+.|.-|+..+++.....   +...+.++....     .+..|+++..  .+.+++..++..+.
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d-----~~g~Lv~~~~--g~~~~~~~~~~~~t   99 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALID-----AGGRLIACEH--GVRLLDPDTGGKIT   99 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeec-----CCCeEEEEcc--ccEEEeccCCceeE
Confidence            35666665 4444455678888888877543211   122223322221     3344444433  35666665554422


Q ss_pred             EecC-----cCccEEEEEeCCCCeEEEEeCC------------CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeee
Q 012799          235 CLSG-----HTLAVTCVKWGGDGVIYTGSQD------------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT  297 (456)
Q Consensus       235 ~~~~-----~~~~v~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  297 (456)
                      .+..     .....+.+...|+|.++.+...            |.++.+|. .+...+.+..+-..-+.++|+|++.   
T Consensus       100 ~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~---  175 (307)
T COG3386         100 LLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGK---  175 (307)
T ss_pred             EeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCC---
Confidence            2211     1245667888899966666554            33444443 4556666655566678899999842   


Q ss_pred             ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCC-CC----C-CccccccccccEeEEEECCC
Q 012799          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV-SK----Q-PKTRMTGHQQLVNHVYFSPD  371 (456)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~----~-~~~~~~~~~~~v~~~~~sp~  371 (456)
                                                      ..+++=+..+.|.-|++.. ..    . .........+..-.++...+
T Consensus       176 --------------------------------tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad  223 (307)
T COG3386         176 --------------------------------TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD  223 (307)
T ss_pred             --------------------------------EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC
Confidence                                            2244445557888887652 11    1 11112223455666788888


Q ss_pred             CCEEEEEECCC-cEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799          372 GQWVASASFDK-SIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       372 ~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      |.+-+++..+| .|.+|+.. |+++..+..+...+++++|
T Consensus       224 G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F  262 (307)
T COG3386         224 GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF  262 (307)
T ss_pred             CCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence            88875555554 89999977 9999998877677777744

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.98  E-value=0.0051  Score=52.00  Aligned_cols=168  Identities=12%  Similarity=0.165  Sum_probs=94.1

Q ss_pred             ccCcccceEEEEecccccCCC-CCEEEEEeCCCcEEEEECCCCeEEEEecCc-CccEEEEEeCCCCeEEEEe-CCCcEEE
Q 012799          189 LSGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDGVIYTGS-QDCTIKV  265 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~-~dg~i~i  265 (456)
                      +.+-...+.++.|.|     + +..+++....+.|..++. +++.+..+.-. .+..-.+++..++.++... .++.+.+
T Consensus        17 l~g~~~e~SGLTy~p-----d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   17 LPGILDELSGLTYNP-----DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYI   90 (248)
T ss_dssp             -TT--S-EEEEEEET-----TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred             CCCccCCccccEEcC-----CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence            445556699999998     5 446666777888888886 47777766433 4678899999888555555 5888999


Q ss_pred             EECCCCe------EEEEee-----cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          266 WETTQGK------LIRELK-----GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       266 wd~~~~~------~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      +++....      ....+.     .++..+..++|.+.                                    .+.++.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~------------------------------------~~~L~v  134 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPK------------------------------------TNRLFV  134 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETT------------------------------------TTEEEE
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCC------------------------------------CCEEEE
Confidence            9884321      112221     23445788888876                                    444666


Q ss_pred             EeCCCcEEEEecCC--CCCCc--------cccccccccEeEEEECCC-CCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799          335 GSDDFTMFLWEPAV--SKQPK--------TRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       335 ~~~dg~i~iwd~~~--~~~~~--------~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~  399 (456)
                      +.+..-..+|.+..  .....        .........+.+++++|. +.+++.......+..+| .+|+.+..+.
T Consensus       135 ~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~  209 (248)
T PF06977_consen  135 AKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS  209 (248)
T ss_dssp             EEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred             EeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence            66665555665433  11110        001122345788999995 56677777888899999 6788776655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.98  E-value=0.0026  Score=58.60  Aligned_cols=201  Identities=20%  Similarity=0.229  Sum_probs=115.2

Q ss_pred             EEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe---CC-CeEEEEeCCCCCCccccccCcccceEEEEecccccC
Q 012799          132 VRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS---KA-GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN  207 (456)
Q Consensus       132 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d-g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  207 (456)
                      +.+=|.+ +.....+......+..-+|+|+++.++..+   .. ..+.++++++++...  .....+.-...+|+|    
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~g~~~~P~fsp----  247 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFNGNNGAPAFSP----  247 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce--eeccCCccCCccCCC----
Confidence            4444443 444555555566778889999998776543   22 359999999887653  222344455667888    


Q ss_pred             CCCCEEEEEe-CCC--cEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCc--EEEEECCCCeEEEEeecC
Q 012799          208 APCRRFVSAS-KDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCT--IKVWETTQGKLIRELKGH  280 (456)
Q Consensus       208 ~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~--i~iwd~~~~~~~~~~~~~  280 (456)
                       +|+.++... .||  .|+++|+..+.... +....+.-+.-.|+|+|  .+++.+..|.  |.++|+..+.. ..+...
T Consensus       248 -DG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~  324 (425)
T COG0823         248 -DGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS  324 (425)
T ss_pred             -CCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc
Confidence             888777654 455  46677877766333 44333333466789999  5555566665  55566665544 323222


Q ss_pred             CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-CCc--EEEEecCCCCCCccccc
Q 012799          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DFT--MFLWEPAVSKQPKTRMT  357 (456)
Q Consensus       281 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~  357 (456)
                      ...-..-.++|+                                    +++++..+. +|.  |.+.|+..+.. ...+ 
T Consensus       325 ~~~~~~p~~Spd------------------------------------G~~i~~~~~~~g~~~i~~~~~~~~~~-~~~l-  366 (425)
T COG0823         325 GGGNSNPVWSPD------------------------------------GDKIVFESSSGGQWDIDKNDLASGGK-IRIL-  366 (425)
T ss_pred             CCCCcCccCCCC------------------------------------CCEEEEEeccCCceeeEEeccCCCCc-EEEc-
Confidence            222224555665                                    555555543 344  56666544442 2222 


Q ss_pred             cccccEeEEEECCCCCEEEEEEC
Q 012799          358 GHQQLVNHVYFSPDGQWVASASF  380 (456)
Q Consensus       358 ~~~~~v~~~~~sp~~~~l~s~~~  380 (456)
                      .+......-.|.|+|+.+...+.
T Consensus       367 t~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         367 TSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             cccccCCCCCcCCCCceEEEecc
Confidence            22333445578888888665543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.93  E-value=0.0038  Score=57.83  Aligned_cols=128  Identities=13%  Similarity=0.174  Sum_probs=68.3

Q ss_pred             EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEE
Q 012799          146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW  225 (456)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  225 (456)
                      +......+..+.++|+|++++++ .||.-.++.....+      ....+.-....|.+     . +.+|+-...+.|.++
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r------~k~~G~g~~~vw~~-----~-n~yAv~~~~~~I~I~   94 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR------NKAFGSGLSFVWSS-----R-NRYAVLESSSTIKIY   94 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE------EEEEEE-SEEEE-T-----S-SEEEEE-TTS-EEEE
T ss_pred             CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc------ccccCceeEEEEec-----C-ccEEEEECCCeEEEE
Confidence            33455568899999999999984 56777788732222      12234455677776     3 357777778889996


Q ss_pred             ECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCc
Q 012799          226 DVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE  292 (456)
Q Consensus       226 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  292 (456)
                      .--+.+....+.. ...+..+-.   |.++....++.|.+||..+++.++.+...  +|..+.|+++
T Consensus        95 kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~  155 (443)
T PF04053_consen   95 KNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDD  155 (443)
T ss_dssp             ETTEE-TT------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred             EcCccccceEEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence            3222222112221 112333332   63444444558999999999999999743  3889999987

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.93  E-value=0.00032  Score=68.41  Aligned_cols=134  Identities=19%  Similarity=0.277  Sum_probs=92.0

Q ss_pred             EeCCCcEEEEECCCCeEEEEeecCCcc-eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799          257 GSQDCTIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (456)
Q Consensus       257 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (456)
                      ......|+-.|+..|+.+.....+... |..++  |+..+                             ....+...+.|
T Consensus       500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~-----------------------------aqlt~e~tflG  548 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKF-----------------------------AQLTNEQTFLG  548 (794)
T ss_pred             CCCCCceEEEecCCCcEEEEeecCCCcceeEec--ccccc-----------------------------cccCCCceEEE
Confidence            345678999999999999999876543 44443  33111                             00113447888


Q ss_pred             eCCCcEEEEecCCCCCCccc----cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEee
Q 012799          336 SDDFTMFLWEPAVSKQPKTR----MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE  411 (456)
Q Consensus       336 ~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~  411 (456)
                      -.+..+..||+|.....+..    ........+|++-+.+| +||+|+.+|.||+||--..+....+.+-..||..|   
T Consensus       549 ls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~i---  624 (794)
T PF08553_consen  549 LSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGI---  624 (794)
T ss_pred             ECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEE---
Confidence            89999999998875422211    11233457788877777 69999999999999943323334566778899999   


Q ss_pred             eeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (456)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~  449 (456)
                                              ..+.||+||++.+.
T Consensus       625 ------------------------Dvt~DGkwilaTc~  638 (794)
T PF08553_consen  625 ------------------------DVTADGKWILATCK  638 (794)
T ss_pred             ------------------------EecCCCcEEEEeec
Confidence                                    77999998876554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.92  E-value=0.0008  Score=65.77  Aligned_cols=135  Identities=14%  Similarity=0.101  Sum_probs=87.9

Q ss_pred             CCEEEEE-eCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe--EEEE-e-
Q 012799          162 GKHLVSG-SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVIC-L-  236 (456)
Q Consensus       162 ~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~-~-  236 (456)
                      .+.|+.. .....|+-.|++.|+.+..--.....+|..++-..-.-.......+.|-.+..+..||.+-..  .+.. . 
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3444443 345678999999998776332322333555442211000123355677778899999998642  2211 1 


Q ss_pred             -cCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceee
Q 012799          237 -SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (456)
Q Consensus       237 -~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  296 (456)
                       -......+|++-+.+|.+++|+.+|.||+||--..+....+.+-+.+|..|..+.++.++
T Consensus       573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwi  633 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWI  633 (794)
T ss_pred             ccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEE
Confidence             123567899999999999999999999999954333444566778999999999986553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=0.019  Score=52.80  Aligned_cols=247  Identities=20%  Similarity=0.245  Sum_probs=150.0

Q ss_pred             cEEEEEECCCCCeEEEE-ECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCCccc
Q 012799          110 AVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSGN  187 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~  187 (456)
                      ....+...+++..+... .....+...+............-......++.++.++.+.. ...++.|.+.|..+.+....
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            45567788888544433 22224555554421111111111144567888888875544 44568999999777665543


Q ss_pred             cccCcccceEEEEecccccCCCCCEEEEEeC---CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE-eCCCc
Q 012799          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASK---DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG-SQDCT  262 (456)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~  262 (456)
                      ...+.  ....+++.|     ++..+..+..   ++.+.+.|..+.+.+.....-..+ ..++++|+| .+++. ..++.
T Consensus       112 ~~vG~--~P~~~~~~~-----~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~  183 (381)
T COG3391         112 IPVGL--GPVGLAVDP-----DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNT  183 (381)
T ss_pred             eeecc--CCceEEECC-----CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCe
Confidence            33333  456777777     7766666655   689999999998888775543344 889999999 45444 47889


Q ss_pred             EEEEECCCCeEEE-E---eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-
Q 012799          263 IKVWETTQGKLIR-E---LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-  337 (456)
Q Consensus       263 i~iwd~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  337 (456)
                      |.+.|.......+ .   .......-..+.+.++                                    +.++..... 
T Consensus       184 v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~------------------------------------g~~~yV~~~~  227 (381)
T COG3391         184 VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPD------------------------------------GNRVYVANDG  227 (381)
T ss_pred             EEEEeCCCcceeccccccccccCCCCceEEECCC------------------------------------CCEEEEEecc
Confidence            9999977655443 1   0111222344556655                                    333333322 


Q ss_pred             --CCcEEEEecCCCCCCccccc-cccccEeEEEECCCCCEEEEEEC-CCcEEEEeCCCCeEEEEEecc
Q 012799          338 --DFTMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGH  401 (456)
Q Consensus       338 --dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~  401 (456)
                        ++.+...|............ +.. ....+.++|+|+++.+... .+.+.+-|..+..........
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~  294 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG  294 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence              25788888665443322111 112 4566899999999888744 488999998887777665433

>smart00320 WD40 WD40 repeats

Probab=97.85  E-value=3e-05  Score=44.21  Aligned_cols=36  Identities=61%  Similarity=0.947  Sum_probs=32.3

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEe
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD  136 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd  136 (456)
                      ...+.+|...|.++.|++++.++++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            445668999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.82  E-value=0.027  Score=52.20  Aligned_cols=49  Identities=12%  Similarity=0.306  Sum_probs=38.1

Q ss_pred             cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799          131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (456)
Q Consensus       131 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  181 (456)
                      .|+||+.. |+.+.++.-..+.+.++.|+.+. .|+....||.+++||+..
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCC
Confidence            49999865 66677666555899999999765 455667899999999863

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.79  E-value=0.004  Score=60.05  Aligned_cols=149  Identities=15%  Similarity=0.158  Sum_probs=90.8

Q ss_pred             CcccEEEEEECCCCCeEEEEE------CCC--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC-------
Q 012799          107 HTEAVLSVAFSPDGRQLASGS------GDT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-------  171 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~------~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-------  171 (456)
                      ....+.+.+++|+|+.+|...      .|+  .+.+++.. +.. ..+.. ....+.-.|+|+|+.|++....       
T Consensus       348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEe
Confidence            335788999999999887665      243  45555542 222 33322 2247889999998888776532       


Q ss_pred             -----CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE---EECCCCeE-E---EEec-C
Q 012799          172 -----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI---WDVSLRKC-V---ICLS-G  238 (456)
Q Consensus       172 -----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~-~---~~~~-~  238 (456)
                           +.+.+.+++.+....    .....|..+.|+|     ||..++... +|.|++   -....+.. +   ..+. .
T Consensus       425 ~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSp-----DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~  494 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS----RVPGPISELQLSR-----DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG  494 (591)
T ss_pred             ccCCCceEEEEeccCchhhh----ccCCCcCeEEECC-----CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence                 233333444433221    3356799999999     999888776 477777   44344431 1   1122 2


Q ss_pred             cCccEEEEEeCCCCeEEEEeCCCcEEEEEC
Q 012799          239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWET  268 (456)
Q Consensus       239 ~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~  268 (456)
                      -...+..+.|.+++.|+++..++...+|.+
T Consensus       495 l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v  524 (591)
T PRK13616        495 LGDTAVSLDWRTGDSLVVGRSDPEHPVWYV  524 (591)
T ss_pred             cCCccccceEecCCEEEEEecCCCCceEEE
Confidence            233468899999996666666554444543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.77  E-value=5.5e-05  Score=60.67  Aligned_cols=101  Identities=15%  Similarity=0.147  Sum_probs=68.5

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEE-EECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccc-ccEE
Q 012799          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV-YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV-GPVY  406 (456)
Q Consensus       329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~  406 (456)
                      +..+++|+.+|.|++|..............-...|.++ .--.++.+.++++.||.|+.|++.-++.+.....|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            34599999999999998653333222222223333333 223356688999999999999999988888777776 4444


Q ss_pred             EEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEe--eCCCceEEC
Q 012799          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG--SKDSTLKVT  456 (456)
Q Consensus       407 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~--s~Dg~v~iW  456 (456)
                      ..                           ..+..+++|+.+  |.|..++.|
T Consensus       150 ~~---------------------------ivv~sd~~i~~a~~S~d~~~k~W  174 (238)
T KOG2444|consen  150 EL---------------------------IVVGSDEFLKIADTSHDRVLKKW  174 (238)
T ss_pred             ee---------------------------EEecCCceEEeeccccchhhhhc
Confidence            44                           345566777777  778777777

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.70  E-value=0.0043  Score=44.29  Aligned_cols=95  Identities=19%  Similarity=0.292  Sum_probs=61.2

Q ss_pred             eCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhcc
Q 012799          248 WGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (456)
Q Consensus       248 ~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (456)
                      +..+|  .|++|+.|..|++|+-.  +.+.++. ....+.++.-..                                  
T Consensus        10 ~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~----------------------------------   52 (111)
T PF14783_consen   10 FDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLG----------------------------------   52 (111)
T ss_pred             cCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcC----------------------------------
Confidence            34455  89999999999999754  5666666 344566665443                                  


Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC---CCC-EEEEEECCCcEEE
Q 012799          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP---DGQ-WVASASFDKSIKL  386 (456)
Q Consensus       326 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp---~~~-~l~s~~~dg~i~i  386 (456)
                         ...++.+..+|+|-+|+- ... ..+ .+. +..+.++++..   ||. -|++|-.+|.|-+
T Consensus        53 ---~~~F~Y~l~NGTVGvY~~-~~R-lWR-iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   53 ---GGRFAYALANGTVGVYDR-SQR-LWR-IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ---CCEEEEEecCCEEEEEeC-cce-eee-ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence               345899999999999983 221 222 222 22255554433   333 4888988887753

>smart00320 WD40 WD40 repeats

Probab=97.69  E-value=0.00016  Score=41.05  Aligned_cols=38  Identities=37%  Similarity=0.725  Sum_probs=32.8

Q ss_pred             CeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       392 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ++.+..+..|...|.++                           .|.++++++++++.|+.+++|
T Consensus         2 ~~~~~~~~~~~~~i~~~---------------------------~~~~~~~~~~~~~~d~~~~~~   39 (40)
T smart00320        2 GELLKTLKGHTGPVTSV---------------------------AFSPDGKYLASASDDGTIKLW   39 (40)
T ss_pred             cEEEEEEEecCCceeEE---------------------------EECCCCCEEEEecCCCeEEEc
Confidence            45566777788888888                           889999999999999999998

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.65  E-value=0.041  Score=49.17  Aligned_cols=141  Identities=18%  Similarity=0.150  Sum_probs=72.2

Q ss_pred             EECCCCCeEEEEE-CCC--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccC
Q 012799          115 AFSPDGRQLASGS-GDT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG  191 (456)
Q Consensus       115 ~~s~~~~~l~~~~-~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  191 (456)
                      +|.+||+.|+.++ .||  .+.+.|+.+++..+...+.........++|+++.++-......+.-.|+++.+... +...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~-vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV-VYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE-EEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE-EEEC
Confidence            5788897666555 454  56777888776544333222223346677888888776666789999999877532 3444


Q ss_pred             cccceEEEEecccccCCCCCEEEEEe----------------------CCCcEEEEECCCCeEEEEecCcCccEEEEEeC
Q 012799          192 HKKWITGISWEPVHLNAPCRRFVSAS----------------------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWG  249 (456)
Q Consensus       192 ~~~~v~~~~~~~~~~~~~~~~l~~~~----------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  249 (456)
                      ....+-...|....   ++..++-.-                      ....|.-.|+.+++....+. ....+..+.++
T Consensus       121 p~~~~g~gt~v~n~---d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fs  196 (386)
T PF14583_consen  121 PDDWKGYGTWVANS---DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFS  196 (386)
T ss_dssp             -TTEEEEEEEEE-T---TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEE
T ss_pred             CcccccccceeeCC---CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccC
Confidence            44555445554321   555544321                      12235556777776544443 45667888999


Q ss_pred             CCC-eEEEEeCC
Q 012799          250 GDG-VIYTGSQD  260 (456)
Q Consensus       250 ~~~-~l~~~~~d  260 (456)
                      |.. .+++=+..
T Consensus       197 P~dp~li~fCHE  208 (386)
T PF14583_consen  197 PTDPTLIMFCHE  208 (386)
T ss_dssp             TTEEEEEEEEE-
T ss_pred             CCCCCEEEEecc
Confidence            866 44444443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.61  E-value=0.0097  Score=42.51  Aligned_cols=88  Identities=18%  Similarity=0.221  Sum_probs=59.8

Q ss_pred             eEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEE
Q 012799          196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIR  275 (456)
Q Consensus       196 v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  275 (456)
                      |.++++....-. ..+.|++|+.|..|++|+-.  ..+..+. ....|++++-...+.++.+..+|+|-+|+-.  ..+.
T Consensus         2 V~al~~~d~d~d-g~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGD-GENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLW   75 (111)
T ss_pred             eeEEEEEecCCC-CcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceee
Confidence            566666553211 23689999999999999743  4555554 3567888888877899999999999999863  3444


Q ss_pred             EeecCCcceEEEEec
Q 012799          276 ELKGHGHWVNSLALS  290 (456)
Q Consensus       276 ~~~~~~~~i~~~~~~  290 (456)
                      .++.... +.++.+.
T Consensus        76 RiKSK~~-~~~~~~~   89 (111)
T PF14783_consen   76 RIKSKNQ-VTSMAFY   89 (111)
T ss_pred             eeccCCC-eEEEEEE
Confidence            4443333 5555543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.00032  Score=68.63  Aligned_cols=80  Identities=23%  Similarity=0.314  Sum_probs=66.3

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       331 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      .++.|++.|.+...|....-.+...-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++.++.+..|..+.+++-+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~  180 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF  180 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence            48899999999999976643333333344678999999999999999999999999999999999999988888877733

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.06  Score=49.50  Aligned_cols=221  Identities=15%  Similarity=0.189  Sum_probs=130.6

Q ss_pred             EEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCC
Q 012799          132 VRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC  210 (456)
Q Consensus       132 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  210 (456)
                      +.+++..+......+..+. ....+...+++..+.... ....+...+........ ....-...-..+...+     .+
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~-~~~~g~~~p~~i~v~~-----~~   85 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQ-SLSVGGVYPAGVAVNP-----AG   85 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeee-eccCCCccccceeeCC-----CC
Confidence            5555555444444433222 556677888775444433 22245555544211111 0110001223444444     55


Q ss_pred             C-EEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC---CCcEEEEECCCCeEEEEeecCCcceE
Q 012799          211 R-RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ---DCTIKVWETTQGKLIRELKGHGHWVN  285 (456)
Q Consensus       211 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~  285 (456)
                      . .++....++.|.+.|....+......... ....+++++++ .++++..   ++++.+.|..+++..........+ .
T Consensus        86 ~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~  163 (381)
T COG3391          86 NKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-T  163 (381)
T ss_pred             CeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-c
Confidence            5 55555567899999987777666554322 56778999988 5555544   689999999999888886544444 7


Q ss_pred             EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE-EEEEeCCCcEEEEecCCCCCCccc---cccccc
Q 012799          286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDDFTMFLWEPAVSKQPKTR---MTGHQQ  361 (456)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~  361 (456)
                      .+++.|+                                    +.. +++-..++.+.+.|..........   ...-..
T Consensus       164 ~~a~~p~------------------------------------g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~  207 (381)
T COG3391         164 GVAVDPD------------------------------------GNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT  207 (381)
T ss_pred             eEEECCC------------------------------------CCeEEEEecCCCeEEEEeCCCcceeccccccccccCC
Confidence            7888887                                    333 444457889999995443222100   111223


Q ss_pred             cEeEEEECCCCCEEEEEECC---CcEEEEeCCCCeEEEE
Q 012799          362 LVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAV  397 (456)
Q Consensus       362 ~v~~~~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~  397 (456)
                      ....+.++|+|.++......   +.+...|..++.....
T Consensus       208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            34678999999976654433   5899999888777654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.57  E-value=0.044  Score=49.22  Aligned_cols=212  Identities=15%  Similarity=0.165  Sum_probs=118.8

Q ss_pred             cEEEEeCCCCcceeEEecC-CCCEEEE---EEcCC----CCEEEEEeC----------CCeEEEEeCCCC-----CCccc
Q 012799          131 TVRLWDLNTQTPMFKCTGH-KNWVLCI---AWSAD----GKHLVSGSK----------AGELQCWDPQTG-----KPSGN  187 (456)
Q Consensus       131 ~v~vwd~~~~~~~~~~~~~-~~~v~~~---~~~~~----~~~l~s~~~----------dg~i~vwd~~~~-----~~~~~  187 (456)
                      .|++.|..+.+.+.++.-. ...+.++   .+..+    ..+|+.|+.          .|.|.++++...     +....
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            5788888777766555422 2234443   33332    467777653          288999999884     22111


Q ss_pred             cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe-EEEEe-cCcCccEEEEEeCCCCeEEEEeCCCcEEE
Q 012799          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICL-SGHTLAVTCVKWGGDGVIYTGSQDCTIKV  265 (456)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~i~i  265 (456)
                      ......++|++++-..       ..++++. ++.|.+|++...+ ....- ......+.++....+ ++++|.....+.+
T Consensus        83 ~~~~~~g~V~ai~~~~-------~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~  153 (321)
T PF03178_consen   83 HSTEVKGPVTAICSFN-------GRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSL  153 (321)
T ss_dssp             EEEEESS-EEEEEEET-------TEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEE
T ss_pred             EEEeecCcceEhhhhC-------CEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc-EEEEEEcccCEEE
Confidence            2234567788887542       3444444 4889999998777 33322 223346777777655 8888988888887


Q ss_pred             EECCC-CeEEEEeec--CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEE
Q 012799          266 WETTQ-GKLIRELKG--HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (456)
Q Consensus       266 wd~~~-~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  342 (456)
                      +..+. +..+..+..  ....+.++.+-.+                                    ++.++.+..+|.+.
T Consensus       154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d------------------------------------~~~~i~~D~~gnl~  197 (321)
T PF03178_consen  154 LRYDEENNKLILVARDYQPRWVTAAEFLVD------------------------------------EDTIIVGDKDGNLF  197 (321)
T ss_dssp             EEEETTTE-EEEEEEESS-BEEEEEEEE-S------------------------------------SSEEEEEETTSEEE
T ss_pred             EEEEccCCEEEEEEecCCCccEEEEEEecC------------------------------------CcEEEEEcCCCeEE
Confidence            74432 332333322  3445666666544                                    23599999999999


Q ss_pred             EEecCCCC------C-Cc-ccc-ccccccEeEE---EECC--CCC------EEEEEECCCcEEEE
Q 012799          343 LWEPAVSK------Q-PK-TRM-TGHQQLVNHV---YFSP--DGQ------WVASASFDKSIKLW  387 (456)
Q Consensus       343 iwd~~~~~------~-~~-~~~-~~~~~~v~~~---~~sp--~~~------~l~s~~~dg~i~iw  387 (456)
                      ++......      . .. ... ......|+++   ++.|  .+.      .++.++.+|.|...
T Consensus       198 ~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  198 VLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            98865211      1 11 111 1223456776   5555  222      47778888888744

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PHA02713 hypothetical protein; Provisional

Probab=97.57  E-value=0.0095  Score=57.61  Aligned_cols=73  Identities=10%  Similarity=0.110  Sum_probs=42.5

Q ss_pred             CCEEEEEeCC------CcEEEEecCC-CC-CCccccccccccEeEEEECCCCCEEEEEECCC--cEEEEeCCCCeEEEEE
Q 012799          329 PERLVSGSDD------FTMFLWEPAV-SK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--SIKLWNGTTGKFVAVF  398 (456)
Q Consensus       329 ~~~l~~~~~d------g~i~iwd~~~-~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg--~i~iwd~~~~~~~~~~  398 (456)
                      +...+.|+.+      ..+..||+.+ .. .....+.........+++  +|++.++|+.||  .+..||..+.+-...-
T Consensus       464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~  541 (557)
T PHA02713        464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHIC  541 (557)
T ss_pred             CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchh
Confidence            3345555543      2467899776 32 222223322223333333  788889999888  7888888887765544


Q ss_pred             ecccc
Q 012799          399 RGHVG  403 (456)
Q Consensus       399 ~~~~~  403 (456)
                      ..|..
T Consensus       542 ~~~~~  546 (557)
T PHA02713        542 HQHSN  546 (557)
T ss_pred             hhcCC
Confidence            44543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.54  E-value=0.058  Score=48.20  Aligned_cols=218  Identities=17%  Similarity=0.194  Sum_probs=99.5

Q ss_pred             eCCCCcceeEEecCCCCEEE-----EEEcCCCCEEEEEeC-CC--eEEEEeCCCCCCccccccCcccceEEEEecccccC
Q 012799          136 DLNTQTPMFKCTGHKNWVLC-----IAWSADGKHLVSGSK-AG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN  207 (456)
Q Consensus       136 d~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  207 (456)
                      |..+|..+..+......-..     =+|.++|+.|+.++. ||  .+.+.|+.+++......... ........+|    
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g-~~~~g~~~s~----   90 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG-DNTFGGFLSP----   90 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-T----
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC-CCccceEEec----
Confidence            55667666666544332222     356678876666554 54  57777888887654222111 2122344455    


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeC--CCCeEEEEeC-----------------------CCc
Q 012799          208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQ-----------------------DCT  262 (456)
Q Consensus       208 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~-----------------------dg~  262 (456)
                       +.+.++.......++-.|+.+.+....+......+-...|.  .++..+++..                       ...
T Consensus        91 -~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~  169 (386)
T PF14583_consen   91 -DDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCR  169 (386)
T ss_dssp             -TSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EE
T ss_pred             -CCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCce
Confidence             66777666666788999999887655555555555444443  3443333321                       123


Q ss_pred             EEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC---CC
Q 012799          263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DF  339 (456)
Q Consensus       263 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg  339 (456)
                      |.-.|+.+|+....+. ....+.-+.++|..                                   +..|+.|-+   +.
T Consensus       170 i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d-----------------------------------p~li~fCHEGpw~~  213 (386)
T PF14583_consen  170 IFTIDLKTGERKVVFE-DTDWLGHVQFSPTD-----------------------------------PTLIMFCHEGPWDL  213 (386)
T ss_dssp             EEEEETTT--EEEEEE-ESS-EEEEEEETTE-----------------------------------EEEEEEEE-S-TTT
T ss_pred             EEEEECCCCceeEEEe-cCccccCcccCCCC-----------------------------------CCEEEEeccCCcce
Confidence            5556777766544443 55667777787763                                   223333322   22


Q ss_pred             -cEEEEecCCCCCCccccccc--cccEeEEEECCCCCEEEEEE-----CCCcEEEEeCCCCeEE
Q 012799          340 -TMFLWEPAVSKQPKTRMTGH--QQLVNHVYFSPDGQWVASAS-----FDKSIKLWNGTTGKFV  395 (456)
Q Consensus       340 -~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~s~~-----~dg~i~iwd~~~~~~~  395 (456)
                       .-+||-++........+..+  ...+..=-|.|||..|.--+     .+..|.-+|..+++..
T Consensus       214 Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~  277 (386)
T PF14583_consen  214 VDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR  277 (386)
T ss_dssp             SS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred             eceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence             13556554433333333222  23345557999998766522     2446777788877553

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.00077  Score=62.20  Aligned_cols=93  Identities=17%  Similarity=0.268  Sum_probs=76.7

Q ss_pred             ccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEE-EEEeCCCC-eEEEEeCCCcEEEEECCC
Q 012799          193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT-CVKWGGDG-VIYTGSQDCTIKVWETTQ  270 (456)
Q Consensus       193 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~-~l~~~~~dg~i~iwd~~~  270 (456)
                      ...+.-+.|+|     .-..+|.+..+|.+.+..++ .+.+.++.-+...++ +++|.||| .+++|-.||+|++.|..+
T Consensus        20 ~~~i~~~ewnP-----~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   20 PINIKRIEWNP-----KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             ccceEEEEEcC-----ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence            44577889999     77899999999999999988 777888876777777 99999999 889999999999999999


Q ss_pred             CeEEEEee-cCCcceEEEEecC
Q 012799          271 GKLIRELK-GHGHWVNSLALST  291 (456)
Q Consensus       271 ~~~~~~~~-~~~~~i~~~~~~~  291 (456)
                      +..+.... .....|.++.|++
T Consensus        94 ~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   94 GGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             CCceeccccccccchheeeccc
Confidence            98777632 2345677777764

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.0028  Score=57.51  Aligned_cols=139  Identities=17%  Similarity=0.330  Sum_probs=95.6

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (456)
                      ++..+.....++-.|++.|+.+.+...+.. |+-+.+.|+....         +                    .....-
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~---------Q--------------------l~~e~T  397 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFA---------Q--------------------LTSEQT  397 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchh---------c--------------------cccccc
Confidence            555666677899999999999999886655 7777777764321         0                    012335


Q ss_pred             EEEeCCCcEEEEecCCCCC-Ccccccccc----ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEE
Q 012799          333 VSGSDDFTMFLWEPAVSKQ-PKTRMTGHQ----QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (456)
Q Consensus       333 ~~~~~dg~i~iwd~~~~~~-~~~~~~~~~----~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  407 (456)
                      +.|-.+..|.-||++-... .+....+|+    ....|.+-..+| +||+||.+|.|++||--..+.-..+.+...+|..
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~h  476 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKH  476 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceee
Confidence            6788899999999885544 222222332    234555555555 7999999999999996333334567788889998


Q ss_pred             EEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799          408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (456)
Q Consensus       408 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~  449 (456)
                      +                           .-+.||++|+..+.
T Consensus       477 V---------------------------dvtadGKwil~Tc~  491 (644)
T KOG2395|consen  477 V---------------------------DVTADGKWILATCK  491 (644)
T ss_pred             E---------------------------EeeccCcEEEEecc
Confidence            8                           77889988775543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.41  E-value=0.00026  Score=56.86  Aligned_cols=109  Identities=14%  Similarity=0.125  Sum_probs=63.7

Q ss_pred             EEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE-EecCcCccE
Q 012799          165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAV  243 (456)
Q Consensus       165 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v  243 (456)
                      +..-+.||.|+-++++.-+...+...-+...-.-+.        -+..+++|+.+|.|.+|......... ....-...|
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~--------~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i  104 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT--------ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESI  104 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcceeecc--------cCceEEeecccceEEEecCCccchHHHhhhcccccc
Confidence            444466778877777654433222222222211111        34579999999999999876221111 111122334


Q ss_pred             EEEEeCCC-C-eEEEEeCCCcEEEEECCCCeEEEEeecCC
Q 012799          244 TCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIRELKGHG  281 (456)
Q Consensus       244 ~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  281 (456)
                      .++....+ + ..++++.||.|+.|+..-++.+.....|.
T Consensus       105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen  105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             eeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence            44333333 3 78899999999999998887776665555

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.41  E-value=0.0021  Score=58.19  Aligned_cols=148  Identities=16%  Similarity=0.156  Sum_probs=97.1

Q ss_pred             CCCeEE-EEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCE-------EEEEeCCCeEEEEeCCCCCC-ccccc
Q 012799          119 DGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-------LVSGSKAGELQCWDPQTGKP-SGNPL  189 (456)
Q Consensus       119 ~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~s~~~dg~i~vwd~~~~~~-~~~~~  189 (456)
                      +.++|+ ++.....++--|++.|+.+..+..+.. |.-+.+.|+.+.       -+.|-.|..|.-||.+-... .....
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            444444 444556788889999999999987776 777888886431       24456678899999874322 11011


Q ss_pred             cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECC
Q 012799          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT  269 (456)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~  269 (456)
                      .+|. ..+.-.|+..... ...++++|+.+|.|++||--..+....+.+-..+|..+..+.+|..+.|..+..+.+.++.
T Consensus       423 q~kq-y~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  423 QSKQ-YSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             eccc-cccccccceeeec-CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            1111 1111122221111 3458999999999999997444444556778899999999999966667777888887754

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.37  E-value=0.041  Score=53.31  Aligned_cols=124  Identities=15%  Similarity=0.081  Sum_probs=69.4

Q ss_pred             CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe------CCC--eEEEEeCCCCCCccccccCcccceEEEE
Q 012799          129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS------KAG--ELQCWDPQTGKPSGNPLSGHKKWITGIS  200 (456)
Q Consensus       129 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~  200 (456)
                      +|.+.-.+-..-.++.-..+....+...+++|+|+.++...      .|+  .|.+++.  +........+  .......
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~g--~~~t~Ps  403 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLEG--HSLTRPS  403 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeecC--CCCCCce
Confidence            56555443222222222223334678999999999887765      244  4555554  2222222232  2377888


Q ss_pred             ecccccCCCCCEEEEEeCC------------CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEE
Q 012799          201 WEPVHLNAPCRRFVSASKD------------GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKV  265 (456)
Q Consensus       201 ~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i  265 (456)
                      |+|     +|..+++....            +.+.+.++..+....   .....|..+.|+||| .++... +|.|.+
T Consensus       404 Wsp-----DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        404 WSL-----DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             ECC-----CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            888     77766666432            233333444333222   235679999999999 554433 477766

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.32  E-value=0.05  Score=52.66  Aligned_cols=228  Identities=17%  Similarity=0.200  Sum_probs=115.5

Q ss_pred             CCCCCeEEEEECC------CcEEEEeCCCCccee--EEecCCCCEEEEEEcCCCCEEEEEeCC-C-----eEEEEeCCCC
Q 012799          117 SPDGRQLASGSGD------TTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKA-G-----ELQCWDPQTG  182 (456)
Q Consensus       117 s~~~~~l~~~~~d------~~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d-g-----~i~vwd~~~~  182 (456)
                      +..+.+++.|+.+      ..+..+|..++.-..  .+. ....-.+++.. ++...++||.| |     ++..||..++
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence            3345667777766      367788887663222  222 22223344443 56788889888 3     5788888877


Q ss_pred             CCccc-cccCcccceEEEEecccccCCCCCEEEEEeCCCc-----EEEEECCCCeEEEEecCcCccEEEEEe-CCCC-eE
Q 012799          183 KPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD-----ARIWDVSLRKCVICLSGHTLAVTCVKW-GGDG-VI  254 (456)
Q Consensus       183 ~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~-~l  254 (456)
                      +-... .+............       +|...++||.||.     +-.||..+.+-...-.-.. ....... .-+| ..
T Consensus       360 ~W~~~a~M~~~R~~~~v~~l-------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iY  431 (571)
T KOG4441|consen  360 QWTPVAPMNTKRSDFGVAVL-------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLY  431 (571)
T ss_pred             ceeccCCccCccccceeEEE-------CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEE
Confidence            63221 11111111111111       6788999999874     6677776554222111111 1111111 1245 55


Q ss_pred             EEEeCCC------cEEEEECCCCeEEEEe--ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799          255 YTGSQDC------TIKVWETTQGKLIREL--KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (456)
Q Consensus       255 ~~~~~dg------~i~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (456)
                      ++|+.++      ++..||..+++-...-  ........ ++.-                                    
T Consensus       432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~------------------------------------  474 (571)
T KOG4441|consen  432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL------------------------------------  474 (571)
T ss_pred             EEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE------------------------------------
Confidence            5666444      4677887776432221  11111111 2211                                    


Q ss_pred             CCCCEEEEEeCCC-----cEEEEecCCCCCCccc-cccccccEeEEEECCCCCEEEEEECCC-----cEEEEeCCCCeE
Q 012799          327 NAPERLVSGSDDF-----TMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSPDGQWVASASFDK-----SIKLWNGTTGKF  394 (456)
Q Consensus       327 ~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~s~~~dg-----~i~iwd~~~~~~  394 (456)
                       ++..++.|+.|+     ++..||..+.+..... +......+..+.+  +++..+.|+.||     +|..||..+.+.
T Consensus       475 -~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  475 -NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             -CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCce
Confidence             134466666665     3777887665533222 2222233333333  567788888776     577777665543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.006  Score=60.22  Aligned_cols=101  Identities=16%  Similarity=0.234  Sum_probs=75.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC
Q 012799          161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT  240 (456)
Q Consensus       161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  240 (456)
                      .+..++.|+..|.+-..|+...-.....-....++|++++|+.     +|..++.|-.+|.|.+||+..++.++.+..|.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-----dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~  172 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-----DGSLLLAGLGDGHVTVWDMHRAKILKVITEHG  172 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-----CCceeccccCCCcEEEEEccCCcceeeeeecC
Confidence            5567888999999998888654221111223457899999988     99999999999999999999999998887777


Q ss_pred             ccEEEEEe---CCCC-eEEEEeCCCcEEEEEC
Q 012799          241 LAVTCVKW---GGDG-VIYTGSQDCTIKVWET  268 (456)
Q Consensus       241 ~~v~~~~~---~~~~-~l~~~~~dg~i~iwd~  268 (456)
                      .+.+.+-+   ..++ .++++...|.  +|.+
T Consensus       173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            66555443   3444 6888887776  4544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.25  E-value=0.17  Score=47.33  Aligned_cols=112  Identities=19%  Similarity=0.292  Sum_probs=67.6

Q ss_pred             EEEEEEcCCCCEEEEE-eCCC----eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC-------
Q 012799          153 VLCIAWSADGKHLVSG-SKAG----ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG-------  220 (456)
Q Consensus       153 v~~~~~~~~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-------  220 (456)
                      +....++|+|+++|.+ +..|    .++++|+++|+.+...+..  .....+.|.+     +++.|+....+.       
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-----d~~~~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-----DGKGFFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-----TSSEEEEEECSTTTSS-CC
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-----CCCEEEEEEeCcccccccC
Confidence            4467899999998865 3334    5999999999654322211  1122388888     777777665433       


Q ss_pred             ----cEEEEECCCCeE--EEEecCcCc--cEEEEEeCCCC-eEE-EEeCC---CcEEEEECCCC
Q 012799          221 ----DARIWDVSLRKC--VICLSGHTL--AVTCVKWGGDG-VIY-TGSQD---CTIKVWETTQG  271 (456)
Q Consensus       221 ----~i~iwd~~~~~~--~~~~~~~~~--~v~~~~~~~~~-~l~-~~~~d---g~i~iwd~~~~  271 (456)
                          .|+.|.+.+...  ...+.....  ....+..++++ .++ .....   ..+.+.|+..+
T Consensus       199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence                378888876532  233433332  26678889988 443 33332   34788888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.20  E-value=0.0016  Score=38.62  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=29.8

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcc
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP  142 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~  142 (456)
                      ...|.+++|+|..++||.|..+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456999999999999999999999999998 4443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.10  E-value=0.084  Score=51.14  Aligned_cols=104  Identities=18%  Similarity=0.273  Sum_probs=56.6

Q ss_pred             CCCEEEEEeCCC------eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC-C-----cEEEEECC
Q 012799          161 DGKHLVSGSKAG------ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-G-----DARIWDVS  228 (456)
Q Consensus       161 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-g-----~i~iwd~~  228 (456)
                      .+.+++.||.++      .+..||..++.............-.+++..      ++..+++||.| |     .+..||..
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~------~~~lYv~GG~~~~~~~l~~ve~YD~~  357 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL------NGKLYVVGGYDSGSDRLSSVERYDPR  357 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE------CCEEEEEccccCCCcccceEEEecCC
Confidence            456677777763      588889887743221111122223333332      55788899988 3     57778877


Q ss_pred             CCeEEE--EecCcCccEEEEEeCCCC-eEEEEeCCCc-----EEEEECCCCe
Q 012799          229 LRKCVI--CLSGHTLAVTCVKWGGDG-VIYTGSQDCT-----IKVWETTQGK  272 (456)
Q Consensus       229 ~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~dg~-----i~iwd~~~~~  272 (456)
                      ..+-..  .+....... .++.. +| ..++|+.||.     +-.||..+.+
T Consensus       358 ~~~W~~~a~M~~~R~~~-~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  358 TNQWTPVAPMNTKRSDF-GVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             CCceeccCCccCccccc-eeEEE-CCEEEEEeccccccccccEEEecCCCCc
Confidence            665222  111111111 12222 44 7777888864     6667776643

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.08  E-value=0.0024  Score=37.88  Aligned_cols=35  Identities=11%  Similarity=0.140  Sum_probs=30.4

Q ss_pred             cccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  395 (456)
                      ...|..++|+|...+||.|+.+|.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            346999999999999999999999999998 55543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.06  E-value=0.19  Score=50.32  Aligned_cols=113  Identities=17%  Similarity=0.161  Sum_probs=71.2

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCCC--------EEEEEEc----------------CCCCEEEEEeCCCeEE
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW--------VLCIAWS----------------ADGKHLVSGSKAGELQ  175 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~l~s~~~dg~i~  175 (456)
                      +..|..++.++.|.-.|..+|+.+.++......        ...+++.                ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            456777778889999999999988776532211        1122222                1345788899999999


Q ss_pred             EEeCCCCCCccccccCcccce-------------EEEEecccccCCCCCEEEEEeC----------CCcEEEEECCCCeE
Q 012799          176 CWDPQTGKPSGNPLSGHKKWI-------------TGISWEPVHLNAPCRRFVSASK----------DGDARIWDVSLRKC  232 (456)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~v-------------~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~  232 (456)
                      -.|.++|+.....  +..+.+             ..+.-.|.-   .+..+++|+.          +|.|+-+|.++++.
T Consensus       274 ALDA~TGk~~W~f--g~~G~vdl~~~~g~~~~g~~~~ts~P~V---~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl  348 (764)
T TIGR03074       274 ALDADTGKLCEDF--GNNGTVDLTAGMGTTPPGYYYPTSPPLV---AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL  348 (764)
T ss_pred             EEECCCCCEEEEe--cCCCceeeecccCcCCCcccccccCCEE---ECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence            9999999876421  111111             011111211   2345666643          68899999999998


Q ss_pred             EEEec
Q 012799          233 VICLS  237 (456)
Q Consensus       233 ~~~~~  237 (456)
                      +..+.
T Consensus       349 ~W~~~  353 (764)
T TIGR03074       349 VWAWD  353 (764)
T ss_pred             eeEEe
Confidence            87764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.94  E-value=0.2  Score=42.56  Aligned_cols=162  Identities=13%  Similarity=0.170  Sum_probs=108.7

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEec-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (456)
Q Consensus       104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  182 (456)
                      +.|-...|.++.|+|+.+.|++......-.|+=..+|+.+.++.- .-.....+.+..++++.++--+++.+.++.+..+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            445566699999999999888888777777776677888877651 1233456788888888888888888888877655


Q ss_pred             CCccc---------cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE---EecCc-------CccE
Q 012799          183 KPSGN---------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI---CLSGH-------TLAV  243 (456)
Q Consensus       183 ~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~-------~~~v  243 (456)
                      .....         ...........++|.|     ....|+.+-+..-+.||.........   ....+       -..|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-----~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDP-----VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCC-----CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            32110         1111255678999999     77788888888878887765332111   11111       2346


Q ss_pred             EEEEeCCCC--eEEEEeCCCcEEEEECCC
Q 012799          244 TCVKWGGDG--VIYTGSQDCTIKVWETTQ  270 (456)
Q Consensus       244 ~~~~~~~~~--~l~~~~~dg~i~iwd~~~  270 (456)
                      .++.|++..  .++-+..++.+.-.|...
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEecCC
Confidence            777788643  666677777777777653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.87  E-value=0.23  Score=43.84  Aligned_cols=172  Identities=16%  Similarity=0.141  Sum_probs=101.7

Q ss_pred             EEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe----c-CCCCEEEEEEcCCCCEEEEEeC------C---CeEEE
Q 012799          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----G-HKNWVLCIAWSADGKHLVSGSK------A---GELQC  176 (456)
Q Consensus       111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~l~s~~~------d---g~i~v  176 (456)
                      +.++..-..+..|+++. . -+.+++.+++.....+.    + .....+.+...|+|.+.++...      +   ..-.+
T Consensus        68 ~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l  145 (307)
T COG3386          68 FSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL  145 (307)
T ss_pred             cccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence            34444443444455543 3 36777776555422222    1 1245667888889886665333      0   01234


Q ss_pred             EeCC-CCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCC--C----e-EEEEecCcCccEEEEE
Q 012799          177 WDPQ-TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSL--R----K-CVICLSGHTLAVTCVK  247 (456)
Q Consensus       177 wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~----~-~~~~~~~~~~~v~~~~  247 (456)
                      |.+. .+.... ....+-..-+.++|+|     +++.+..+.. .+.|.-|++..  +    + ....+....+..-.++
T Consensus       146 yr~~p~g~~~~-l~~~~~~~~NGla~Sp-----Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~  219 (307)
T COG3386         146 YRVDPDGGVVR-LLDDDLTIPNGLAFSP-----DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMA  219 (307)
T ss_pred             EEEcCCCCEEE-eecCcEEecCceEECC-----CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceE
Confidence            4444 333332 4455555667899999     8877777765 47788887752  1    1 1222223445566777


Q ss_pred             eCCCCeEEEEe-CCC-cEEEEECCCCeEEEEeecCCcceEEEEecC
Q 012799          248 WGGDGVIYTGS-QDC-TIKVWETTQGKLIRELKGHGHWVNSLALST  291 (456)
Q Consensus       248 ~~~~~~l~~~~-~dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  291 (456)
                      ...+|.+.++. .+| .|..|+.. ++.+..+..+...+++++|--
T Consensus       220 vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         220 VDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             EeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence            88888666443 443 89999988 899988887767777777754

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.87  E-value=0.4  Score=48.05  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=72.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCccccccCccc-------ceEEEEeccc-----------ccCCCCCEEEEEeCCCcEE
Q 012799          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK-------WITGISWEPV-----------HLNAPCRRFVSASKDGDAR  223 (456)
Q Consensus       162 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~v~~~~~~~~-----------~~~~~~~~l~~~~~dg~i~  223 (456)
                      +..++.++.++.|.-.|..+|+.+.+.......       ....+.+...           .....+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            557777888888999999888865432111110       0112222210           0011445888899999999


Q ss_pred             EEECCCCeEEEEecCcCccE-------------EEEEeCC---CCeEEEEeC----------CCcEEEEECCCCeEEEEe
Q 012799          224 IWDVSLRKCVICLSGHTLAV-------------TCVKWGG---DGVIYTGSQ----------DCTIKVWETTQGKLIREL  277 (456)
Q Consensus       224 iwd~~~~~~~~~~~~~~~~v-------------~~~~~~~---~~~l~~~~~----------dg~i~iwd~~~~~~~~~~  277 (456)
                      -.|.++++.+..+.. .+.+             ..+.-.|   ++.+++|+.          +|.|+-+|.++|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998876532 1111             0111122   456666643          688999999999998877


Q ss_pred             e
Q 012799          278 K  278 (456)
Q Consensus       278 ~  278 (456)
                      .
T Consensus       353 ~  353 (764)
T TIGR03074       353 D  353 (764)
T ss_pred             e
Confidence            5

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.86  E-value=0.2  Score=42.36  Aligned_cols=62  Identities=26%  Similarity=0.354  Sum_probs=47.4

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEEC-----CCcEEEEeCCCC-cceeEEecCCCCEEEEEEcCCCCEEEEEe
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSG-----DTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSGS  169 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~-----d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  169 (456)
                      +.+.||.      .|||||.+|...-.     .|.|-|||...+ +.+..+..|.-....+.|.+||+.++.+.
T Consensus       113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            4455663      69999998887543     368999998754 44566778888888999999999988764

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.85  E-value=0.2  Score=41.02  Aligned_cols=46  Identities=13%  Similarity=0.154  Sum_probs=40.6

Q ss_pred             EEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799          365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       365 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      .++...+|++.++.-..|+|...|..+|+.+..++-....|++++|
T Consensus       216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF  261 (310)
T KOG4499|consen  216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF  261 (310)
T ss_pred             cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence            4566778998888888999999999999999999999999999966

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.77  E-value=0.28  Score=41.53  Aligned_cols=141  Identities=18%  Similarity=0.216  Sum_probs=83.0

Q ss_pred             EEEECCCCC-eEEEEECCC-cEEEEeCCCCcceeEEecCCCC--EEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCC
Q 012799          113 SVAFSPDGR-QLASGSGDT-TVRLWDLNTQTPMFKCTGHKNW--VLCIAWSADGKHLVSGSKA-----GELQCWDPQTGK  183 (456)
Q Consensus       113 ~~~~s~~~~-~l~~~~~d~-~v~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~  183 (456)
                      .++|+|... -++.+-.-| ...++|.+..+...++...++.  --.=.|+|||.+|...-.|     |.|-|||.+.+-
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            477888543 455554444 3668888877666554322211  1123689999999876443     679999998654


Q ss_pred             CccccccCcccceEEEEecccccCCCCCEEEEEeC------------------CCcEEEEECCCCeEEEE--ec--CcCc
Q 012799          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK------------------DGDARIWDVSLRKCVIC--LS--GHTL  241 (456)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~--~~--~~~~  241 (456)
                      ...-.+..|.-.-..+.+.+     ||+.++.+..                  .-++.+.|..++..+.+  +.  .+..
T Consensus       152 qrvgE~~t~GiGpHev~lm~-----DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l  226 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMA-----DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL  226 (366)
T ss_pred             ceecccccCCcCcceeEEec-----CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence            33334555665666777777     8888887643                  11233334334433322  11  2345


Q ss_pred             cEEEEEeCCCCeEEEEe
Q 012799          242 AVTCVKWGGDGVIYTGS  258 (456)
Q Consensus       242 ~v~~~~~~~~~~l~~~~  258 (456)
                      .|..++..++|.++.|+
T Consensus       227 SiRHld~g~dgtvwfgc  243 (366)
T COG3490         227 SIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             ceeeeeeCCCCcEEEEE
Confidence            57777777777555544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.66  E-value=0.35  Score=41.24  Aligned_cols=117  Identities=12%  Similarity=0.121  Sum_probs=79.2

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC
Q 012799          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (456)
Q Consensus       148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  227 (456)
                      +-...+.++.|+|+.+.|++......-.|+=..+|+.+.++....-.....+.|..     ++.+.++--.++.+.++.+
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-----~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-----GNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-----CCEEEEEehhcceEEEEEE
Confidence            44555999999999999998888887777777777766544333333445566654     5666666666888888877


Q ss_pred             CCCeEEEEe----------cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECC
Q 012799          228 SLRKCVICL----------SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT  269 (456)
Q Consensus       228 ~~~~~~~~~----------~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~  269 (456)
                      .....+...          ...+.....++|+|.. .|+.+-...-+.||...
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            654322111          1125567889999977 77777777777777655

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.63  E-value=0.55  Score=43.16  Aligned_cols=48  Identities=17%  Similarity=0.262  Sum_probs=39.9

Q ss_pred             cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc
Q 012799          356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG  403 (456)
Q Consensus       356 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  403 (456)
                      +......+.+++.+|++++.|+...=|+|.++|+.++..++.++|-.+
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd  350 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD  350 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence            344455688999999999988887789999999999999888887554

>PRK10115 protease 2; Provisional

Probab=96.60  E-value=0.92  Score=45.39  Aligned_cols=112  Identities=12%  Similarity=0.058  Sum_probs=66.3

Q ss_pred             ccEEEEEECCCCCeEEEEECC-----CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC------CeEEEE
Q 012799          109 EAVLSVAFSPDGRQLASGSGD-----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA------GELQCW  177 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d-----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~i~vw  177 (456)
                      -.+..+.++|||++||.+...     ..|++-|+.++..+........  ..++|.+|++.|+....+      ..|..+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            457788999999998876432     3688999988764433222222  569999999877665442      357888


Q ss_pred             eCCCCCCccc-cccCcccceE-EEEecccccCCCCCEEEEEeC---CCcEEEEEC
Q 012799          178 DPQTGKPSGN-PLSGHKKWIT-GISWEPVHLNAPCRRFVSASK---DGDARIWDV  227 (456)
Q Consensus       178 d~~~~~~~~~-~~~~~~~~v~-~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~  227 (456)
                      ++.++..... .+........ ....+.     ++.+++..+.   ++.+.+++.
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~-----d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTT-----SKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcC-----CCCEEEEEEECCccccEEEEEC
Confidence            8887732211 2222222222 122221     5566554433   457888884

>PHA02713 hypothetical protein; Provisional

Probab=96.58  E-value=0.12  Score=50.22  Aligned_cols=63  Identities=13%  Similarity=0.225  Sum_probs=35.4

Q ss_pred             CCCeEEEEECC------CcEEEEeCCCCcce--eEEecCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCC
Q 012799          119 DGRQLASGSGD------TTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSKAG-----ELQCWDPQTGK  183 (456)
Q Consensus       119 ~~~~l~~~~~d------~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~  183 (456)
                      ++.+++.||.+      ..+..||..++.-.  ..+.........+.  -+|+..+.||.++     .+..||..+++
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            56777777753      24777887665311  11111111222222  2677778888764     48889988764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.42  E-value=0.11  Score=50.07  Aligned_cols=114  Identities=18%  Similarity=0.196  Sum_probs=77.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC---
Q 012799          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS---  228 (456)
Q Consensus       152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---  228 (456)
                      .+.-+.-+.-++..++-+....+.|||.+.+...........+.|.++.|....   +++.+++.|....|.+|.-.   
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~---d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTP---DGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecC---CCCEEEEEEcCcEEEEEEccchh
Confidence            344444444444444444445799999998875543333557889999998744   88999999999999998531   


Q ss_pred             ------CCeEEEEe--cCcC-ccEEEEEeCCCCeEEEEeCCCcEEEEECC
Q 012799          229 ------LRKCVICL--SGHT-LAVTCVKWGGDGVIYTGSQDCTIKVWETT  269 (456)
Q Consensus       229 ------~~~~~~~~--~~~~-~~v~~~~~~~~~~l~~~~~dg~i~iwd~~  269 (456)
                            +...+..+  ..+. .+|.+..|.++|.+++|+. +.+.++|-.
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk~  156 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDKW  156 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECCC
Confidence                  11223222  2333 6799999999998887765 468888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.39  E-value=0.6  Score=40.84  Aligned_cols=122  Identities=21%  Similarity=0.199  Sum_probs=71.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE-----
Q 012799          161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-----  235 (456)
Q Consensus       161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----  235 (456)
                      .++.|+.|+.+| +.+++........  ...+...|..+...|     +-+.+++-+ |+.++++++........     
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~--~i~~~~~I~ql~vl~-----~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPT--RILKLSSITQLSVLP-----ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccce--eEeecceEEEEEEec-----ccCEEEEEc-CCccEEEEchhhcccccccccc
Confidence            678899999998 8999883322222  112233388888877     445555554 49999999875443331     


Q ss_pred             ---------ecCcCccEEEEE--eCCCC-eEEEEeCCCcEEEEECCCC-----eEEEEeecCCcceEEEEecCc
Q 012799          236 ---------LSGHTLAVTCVK--WGGDG-VIYTGSQDCTIKVWETTQG-----KLIRELKGHGHWVNSLALSTE  292 (456)
Q Consensus       236 ---------~~~~~~~v~~~~--~~~~~-~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~~~~  292 (456)
                               .......+...+  -...+ ..++......|.+|.....     +..+++. -...+..++|..+
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~  149 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN  149 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC
Confidence                     111223344444  12233 4444555558888876553     3455555 3366777777754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.27  E-value=1  Score=42.37  Aligned_cols=149  Identities=13%  Similarity=0.120  Sum_probs=85.6

Q ss_pred             CCcccEEEEEECCCC----CeEEEEECCCcEEEEeCCC-----CcceeEEecC-----CCCEEEEEEcCCCCEEEEEeCC
Q 012799          106 GHTEAVLSVAFSPDG----RQLASGSGDTTVRLWDLNT-----QTPMFKCTGH-----KNWVLCIAWSADGKHLVSGSKA  171 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~----~~l~~~~~d~~v~vwd~~~-----~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~d  171 (456)
                      |.-+.|..++|.|-+    ..|++......|.||.+..     ++.+..-..+     .--...+.|+|....|++-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            455679999999953    2344445677999998752     2222221111     1123457899998888876665


Q ss_pred             CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEE----EecCcCccEEEE
Q 012799          172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVI----CLSGHTLAVTCV  246 (456)
Q Consensus       172 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~----~~~~~~~~v~~~  246 (456)
                      ..-.+++++......+.-....+.|.+.+|.+     ||++|+++-. .=.-++||-.......    ....-.+.|.++
T Consensus       134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-----DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi  208 (671)
T PF15390_consen  134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-----DGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSI  208 (671)
T ss_pred             ceeEeeeeeeCCceEEEeccCCceEEEEEecC-----cCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEE
Confidence            55556666544332222335567899999999     8888877644 3356788854332110    011123455555


Q ss_pred             EeCCCCeEEEEeC
Q 012799          247 KWGGDGVIYTGSQ  259 (456)
Q Consensus       247 ~~~~~~~l~~~~~  259 (456)
                      .-.-+..++++..
T Consensus       209 ~AT~dsqVAvaTE  221 (671)
T PF15390_consen  209 EATVDSQVAVATE  221 (671)
T ss_pred             EEeccceEEEEec
Confidence            5544444554443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=96.26  E-value=0.31  Score=36.24  Aligned_cols=121  Identities=9%  Similarity=0.112  Sum_probs=77.5

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc------ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799          155 CIAWSADGKHLVSGSKAGELQCWDPQTGKPSG------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (456)
Q Consensus       155 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  228 (456)
                      .-.|......|+.++.-|+|.|++........      ..+..-...|++++-.+.........|+.|+. ..+..||+.
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~   81 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE   81 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence            34565666688888899999999877543211      12333456777877666544445566777666 679999998


Q ss_pred             CCeEEEEecCcCccEEEEEeCC----CCeEEEEeCCCcEEEEECCCCeEEEEe
Q 012799          229 LRKCVICLSGHTLAVTCVKWGG----DGVIYTGSQDCTIKVWETTQGKLIREL  277 (456)
Q Consensus       229 ~~~~~~~~~~~~~~v~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~  277 (456)
                      ...-+.... -...+.++.+..    ..-++..+.+..|.-||..-.+...+.
T Consensus        82 ~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   82 NNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             cCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            776554332 345677776632    224555666678888887766655544

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.24  E-value=0.4  Score=39.36  Aligned_cols=136  Identities=19%  Similarity=0.232  Sum_probs=84.0

Q ss_pred             ccEEEEEECCCCCeEEEEEC----------CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE-EEeCCCeEEEE
Q 012799          109 EAVLSVAFSPDGRQLASGSG----------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCW  177 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~----------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vw  177 (456)
                      ...+.-..+|+|++++ |..          .|.++.|-..  ..+..+...-.--+.++|+.+.+.+. +-+.+-.|.-|
T Consensus       109 nR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             cccccCccCCCCceee-eeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            3445556789999844 321          2344555432  22222223334446788988776555 45567778778


Q ss_pred             e--CCCCCCcccc----ccC----cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEE
Q 012799          178 D--PQTGKPSGNP----LSG----HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK  247 (456)
Q Consensus       178 d--~~~~~~~~~~----~~~----~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  247 (456)
                      |  ..+|......    +..    ....--.++.     ..+|..+++.-..++|.-.|..+++.+..++-....|+|++
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I-----D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc  260 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI-----DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC  260 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceE-----ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence            7  6666543210    000    0001112222     22778888888889999999999999999988899999999


Q ss_pred             eCCCC
Q 012799          248 WGGDG  252 (456)
Q Consensus       248 ~~~~~  252 (456)
                      |...+
T Consensus       261 FgGkn  265 (310)
T KOG4499|consen  261 FGGKN  265 (310)
T ss_pred             ecCCC
Confidence            98765

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.98  E-value=0.91  Score=39.05  Aligned_cols=140  Identities=20%  Similarity=0.209  Sum_probs=85.7

Q ss_pred             cEEEEEECCCCCeEEEEE---CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCCCc
Q 012799          110 AVLSVAFSPDGRQLASGS---GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD-PQTGKPS  185 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~---~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~  185 (456)
                      .+.+.+++++++.+|...   ....++++..  +....... ....+....|++++...+....+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            788999999999887765   2334555544  33333322 233788889999987766666666666664 3333322


Q ss_pred             cccc--cCcccceEEEEecccccCCCCCEEEEEe---CCCcEEEEECC---CC------eEEEEecCcCccEEEEEeCCC
Q 012799          186 GNPL--SGHKKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDVS---LR------KCVICLSGHTLAVTCVKWGGD  251 (456)
Q Consensus       186 ~~~~--~~~~~~v~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~~~~~v~~~~~~~~  251 (456)
                      ....  ......|..+.++|     ||..++...   .++.|.+--+.   .+      ............++.+.|.++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSp-----DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSP-----DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             eEEecccccCCceEEEEECC-----CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence            1111  11112899999999     999888766   34667766542   22      111222233568899999999


Q ss_pred             CeEEEE
Q 012799          252 GVIYTG  257 (456)
Q Consensus       252 ~~l~~~  257 (456)
                      +.|++.
T Consensus       177 ~~L~V~  182 (253)
T PF10647_consen  177 STLVVL  182 (253)
T ss_pred             CEEEEE
Confidence            844433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.94  E-value=1.4  Score=42.86  Aligned_cols=40  Identities=15%  Similarity=0.168  Sum_probs=32.4

Q ss_pred             cccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  399 (456)
                      .+.+..+.+||+.++|+--..+|.|.+-+....+.+..+.
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            3567889999999999999999999999877666655544

>PRK13684 Ycf48-like protein; Provisional

Probab=95.93  E-value=0.91  Score=40.95  Aligned_cols=151  Identities=13%  Similarity=0.142  Sum_probs=86.2

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEE-EeCCCCcceeEE-ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRL-WDLNTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~v-wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  185 (456)
                      ...+.++.+.|++.+++++ ..|.+.. ++ ..++.-... ..-...++++.+.++++.++++ ..|.+.+=..+.|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            5678999999998777666 4554443 22 222222222 2345678999999998876665 5676653233444322


Q ss_pred             ccccc---CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec---CcCccEEEEEeCCCCeEEEEeC
Q 012799          186 GNPLS---GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDGVIYTGSQ  259 (456)
Q Consensus       186 ~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~  259 (456)
                      .....   .....+.++.+.+     ++. ++.++.+|.+.. ....++.-....   .-......+.+..++..+..+.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~-----~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRT-----PGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             ccccCCccccccceeeEEEcC-----CCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence            11111   1223467788876     555 455556675543 334333322222   2233577777776676677788


Q ss_pred             CCcEEEEEC
Q 012799          260 DCTIKVWET  268 (456)
Q Consensus       260 dg~i~iwd~  268 (456)
                      .|.|..|+-
T Consensus       322 ~G~il~~~~  330 (334)
T PRK13684        322 RGVLLRYVG  330 (334)
T ss_pred             CceEEEecC
Confidence            888877763

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.85  E-value=2.3  Score=42.71  Aligned_cols=223  Identities=10%  Similarity=0.032  Sum_probs=127.7

Q ss_pred             eEEEEECCCcEEEEeCCCCcce--eEEecCCCCEEEEEEcCCCCEEEEEeCC--------------CeEEEEeCCCCCCc
Q 012799          122 QLASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSKA--------------GELQCWDPQTGKPS  185 (456)
Q Consensus       122 ~l~~~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d--------------g~i~vwd~~~~~~~  185 (456)
                      .|+++. .+.+++..++.-+.+  +++. -......+++.+....+++.+..              ..++++|.++-+..
T Consensus       686 ~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl  763 (1096)
T KOG1897|consen  686 SLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL  763 (1096)
T ss_pred             eEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence            455553 346777766653332  2222 33445667776644444443321              13777777766544


Q ss_pred             cccccCcccceE---EEEecccccCCC-CCEEEEEeC----------CCcEEEEECCCCeEEEEecCc--CccEEEEEeC
Q 012799          186 GNPLSGHKKWIT---GISWEPVHLNAP-CRRFVSASK----------DGDARIWDVSLRKCVICLSGH--TLAVTCVKWG  249 (456)
Q Consensus       186 ~~~~~~~~~~v~---~~~~~~~~~~~~-~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~  249 (456)
                      ..........+.   ++.|..     + +.++++|+.          .|.|.++.....+.+.....+  .+.+.++..-
T Consensus       764 ~~hef~~~E~~~Si~s~~~~~-----d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f  838 (1096)
T KOG1897|consen  764 SSHEFERNETALSIISCKFTD-----DPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF  838 (1096)
T ss_pred             eeccccccceeeeeeeeeecC-----CCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh
Confidence            322222222333   334554     3 567777753          577888887774444444322  3444444433


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799          250 GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (456)
Q Consensus       250 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (456)
                       +|+++ ++-...|++|+..+.+.++.-..+..++..+.+.-.                                    +
T Consensus       839 -ngkll-A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~------------------------------------g  880 (1096)
T KOG1897|consen  839 -NGKLL-AGINQSVRLYEWTTERELRIECNISNPIIALDLQVK------------------------------------G  880 (1096)
T ss_pred             -CCeEE-EecCcEEEEEEccccceehhhhcccCCeEEEEEEec------------------------------------C
Confidence             33444 455678999999988777776667777777777665                                    5


Q ss_pred             CEEEEEeCCCcEEEEecCCCC--CCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          330 ERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       330 ~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                      +.++.|..-+.+.+...+..+  -....-.-+..+.+++.+-.+. ..+.+..+|.+++-...
T Consensus       881 deI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d-~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  881 DEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDD-TYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             cEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCc-eEEeecccccEEEEEec
Confidence            668888887777665544333  2222223466778888776544 44555677887777544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.84  E-value=0.64  Score=43.72  Aligned_cols=149  Identities=15%  Similarity=0.275  Sum_probs=83.9

Q ss_pred             cccEEEEEECCCCCe-EEEEE--CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC----CCEEEEEeCCCeEEEEeCC
Q 012799          108 TEAVLSVAFSPDGRQ-LASGS--GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD----GKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~-l~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~dg~i~vwd~~  180 (456)
                      -.+|..++|. ||+. ++|.-  .+|.+++=|.       ..-|.-..|..+.|.|-    ...+++......|.||.+.
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCCc-------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            3478889998 4544 44431  2333322221       12244557899999983    3355666677899999876


Q ss_pred             CC-----CCcccccc----CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC--CeEEEEecCcCccEEEEEeC
Q 012799          181 TG-----KPSGNPLS----GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL--RKCVICLSGHTLAVTCVKWG  249 (456)
Q Consensus       181 ~~-----~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~  249 (456)
                      ..     +.......    ...---..+.|+|     ....|++-.....-.++++..  .+....+ ...+.|.|.+|.
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-----k~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT  164 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-----KKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWT  164 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccC-----CCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEec
Confidence            22     21110000    1111124577888     666676666554444555543  2233333 356789999999


Q ss_pred             CCC-eEEEE-eCCCcEEEEECCC
Q 012799          250 GDG-VIYTG-SQDCTIKVWETTQ  270 (456)
Q Consensus       250 ~~~-~l~~~-~~dg~i~iwd~~~  270 (456)
                      +|| +|+++ +..=.-++||-..
T Consensus       165 ~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  165 KDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CcCCEEEEEeCCeEEEEEecCch
Confidence            999 55544 3334577898543

>PHA03098 kelch-like protein; Provisional

Probab=95.83  E-value=0.64  Score=45.26  Aligned_cols=106  Identities=11%  Similarity=0.077  Sum_probs=52.9

Q ss_pred             CCCCeEEEEECCC------cEEEEeCCCCcceeE--EecCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCCC
Q 012799          118 PDGRQLASGSGDT------TVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGKHLVSGSKA-----GELQCWDPQTGKP  184 (456)
Q Consensus       118 ~~~~~l~~~~~d~------~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~  184 (456)
                      .++.+++.|+.++      .+..||..+.+-...  +.........+.+  +++..+.||.+     ..+..||..+++-
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            3556677776542      467788766542211  1111112222222  67777788765     3477888876643


Q ss_pred             ccccccCcccceEEEEecccccCCCCCEEEEEeCC------CcEEEEECCCCe
Q 012799          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD------GDARIWDVSLRK  231 (456)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~  231 (456)
                      .......+...-.+++. -     ++..++.||.+      ..+..||..+.+
T Consensus       371 ~~~~~lp~~r~~~~~~~-~-----~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        371 REEPPLIFPRYNPCVVN-V-----NNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             eeCCCcCcCCccceEEE-E-----CCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            21111011110111111 1     55677777732      357888887654

>PHA03098 kelch-like protein; Provisional

Probab=95.81  E-value=0.71  Score=44.95  Aligned_cols=105  Identities=14%  Similarity=0.076  Sum_probs=49.7

Q ss_pred             CCCEEEEEeCCC------eEEEEeCCCCCCcccc-ccCcccceEEEEecccccCCCCCEEEEEeCC-----CcEEEEECC
Q 012799          161 DGKHLVSGSKAG------ELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVS  228 (456)
Q Consensus       161 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  228 (456)
                      ++..++.||.++      .+..||..+++..... +.........+..       ++..++.||.+     ..+..||..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-------~~~lyv~GG~~~~~~~~~v~~yd~~  366 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-------NNRIYVIGGIYNSISLNTVESWKPG  366 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-------CCEEEEEeCCCCCEecceEEEEcCC
Confidence            566677776543      4778887766532211 1101111112221       56677888765     347778876


Q ss_pred             CCeEEEEecC-cCccEEEEEeCCCCeEEEEeCC------CcEEEEECCCCe
Q 012799          229 LRKCVICLSG-HTLAVTCVKWGGDGVIYTGSQD------CTIKVWETTQGK  272 (456)
Q Consensus       229 ~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~  272 (456)
                      +.+-...-.- ....-.+++...+...+.|+.+      ..+..||..+++
T Consensus       367 ~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        367 ESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            6542221110 1111112222222245555532      357788877654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.68  E-value=0.44  Score=43.84  Aligned_cols=141  Identities=12%  Similarity=0.148  Sum_probs=88.7

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--------eEEEEeCCCcEEEEECCCCe-EEEEeecCCcc
Q 012799          213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--------VIYTGSQDCTIKVWETTQGK-LIRELKGHGHW  283 (456)
Q Consensus       213 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~  283 (456)
                      +..|+....++-.|++.|+.+....-|...  -+.+.|..        .-++|-.+..|.-.|.+-.. .+.... ....
T Consensus       483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY  559 (776)
T COG5167         483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDY  559 (776)
T ss_pred             EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhc
Confidence            334566667888899999988888766554  46666643        23455566666666665322 111111 1111


Q ss_pred             eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccE
Q 012799          284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV  363 (456)
Q Consensus       284 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  363 (456)
                      .+.-.|+                                ........++++++..|.|++|| +-+......+.+-...|
T Consensus       560 ~tKn~Fs--------------------------------s~~tTesGyIa~as~kGDirLyD-Rig~rAKtalP~lG~aI  606 (776)
T COG5167         560 KTKNKFS--------------------------------SGMTTESGYIAAASRKGDIRLYD-RIGKRAKTALPGLGDAI  606 (776)
T ss_pred             ccccccc--------------------------------ccccccCceEEEecCCCceeeeh-hhcchhhhcCcccccce
Confidence            1111111                                11122356799999999999999 66666666777888889


Q ss_pred             eEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          364 NHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       364 ~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                      ..+..+.+|+++++.+ ...+.+-|++
T Consensus       607 k~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         607 KHIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             eeeEeecCCcEEEEee-cceEEEEecc
Confidence            9999999999866655 3456666654

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=95.65  E-value=1.9  Score=40.59  Aligned_cols=150  Identities=14%  Similarity=0.130  Sum_probs=83.8

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  186 (456)
                      ..+|.++.+..+|. +..|+.|| +..||..+++.+..-.... ..|..+.-+-.| .+..|+.+| +.+.+.+..+...
T Consensus       164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn  239 (671)
T COG3292         164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN  239 (671)
T ss_pred             CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence            45788888888875 66677777 7778877777665544333 566666655455 467777766 6676665533222


Q ss_pred             ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc--CccEEEEEeCCCCeEEEEeCCCcEE
Q 012799          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH--TLAVTCVKWGGDGVIYTGSQDCTIK  264 (456)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~l~~~~~dg~i~  264 (456)
                      .-..-..+.|..+.-.      ....+-.|+..|..+.---+.+-.....+.|  .+.|.++..+.+|.+.+++.+|.++
T Consensus       240 ~~~~lp~~~I~ll~qD------~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~  313 (671)
T COG3292         240 WGPMLPSGNILLLVQD------AQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVR  313 (671)
T ss_pred             cCCCCcchheeeeecc------cCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEE
Confidence            1111222333333322      1235566666664433222222111112222  3456677777788889888888766


Q ss_pred             EEE
Q 012799          265 VWE  267 (456)
Q Consensus       265 iwd  267 (456)
                      +-+
T Consensus       314 ~~~  316 (671)
T COG3292         314 YLT  316 (671)
T ss_pred             Eec
Confidence            544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.53  E-value=1.9  Score=39.44  Aligned_cols=220  Identities=15%  Similarity=0.121  Sum_probs=98.2

Q ss_pred             CCCeEEEEE-CCCcEEEEeCCCCc----ceeEEec---CC----CCEEEEEEcCCCCEEEEE--eCC----CeEEEEeCC
Q 012799          119 DGRQLASGS-GDTTVRLWDLNTQT----PMFKCTG---HK----NWVLCIAWSADGKHLVSG--SKA----GELQCWDPQ  180 (456)
Q Consensus       119 ~~~~l~~~~-~d~~v~vwd~~~~~----~~~~~~~---~~----~~v~~~~~~~~~~~l~s~--~~d----g~i~vwd~~  180 (456)
                      +.++|+..+ ..+.|+|.|+.+..    ..+.+..   +.    .....+.--|+|+.++++  ..+    |-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777776 67799999997532    2233321   11    122233344688888874  222    457788877


Q ss_pred             CCCCcccccc--CcccceEEEEecccccCCCCCEEEEEe--------------------CCCcEEEEECCCCeEEEEecC
Q 012799          181 TGKPSGNPLS--GHKKWITGISWEPVHLNAPCRRFVSAS--------------------KDGDARIWDVSLRKCVICLSG  238 (456)
Q Consensus       181 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~  238 (456)
                      +.+....-..  .....-+.+-|.|     ..+.+++..                    ...++.+||+.+.+.++++.-
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qp-----r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL  240 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQP-----RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL  240 (461)
T ss_dssp             T--EEEE--SB-TT------EEEET-----TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred             cccccceeccCCCCCCCCCCeEEcC-----CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence            6554332111  1123345666666     445666543                    245799999999999988853


Q ss_pred             cC--ccEEEEEeCC--CC--eEEEEeCCCcEEEEEC-CCCeE----EEEeecC-----------------CcceEEEEec
Q 012799          239 HT--LAVTCVKWGG--DG--VIYTGSQDCTIKVWET-TQGKL----IRELKGH-----------------GHWVNSLALS  290 (456)
Q Consensus       239 ~~--~~v~~~~~~~--~~--~l~~~~~dg~i~iwd~-~~~~~----~~~~~~~-----------------~~~i~~~~~~  290 (456)
                      ..  .....+.|..  +.  -++.+...++|..|-. ..++-    +-.+...                 ..-++.|.++
T Consensus       241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS  320 (461)
T PF05694_consen  241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS  320 (461)
T ss_dssp             -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred             CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence            32  2345566643  33  4444555666666543 33321    1111110                 1224555555


Q ss_pred             CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE-EEeCCCcEEEEecCCCCCCccccc------------
Q 012799          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSKQPKTRMT------------  357 (456)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~------------  357 (456)
                      .+                                    .++|. +.-.+|.++.||+.....+...-.            
T Consensus       321 lD------------------------------------DrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~  364 (461)
T PF05694_consen  321 LD------------------------------------DRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDH  364 (461)
T ss_dssp             TT------------------------------------S-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--
T ss_pred             cC------------------------------------CCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCC
Confidence            55                                    34444 455689999999987665543211            


Q ss_pred             ------cccccEeEEEECCCCCEEEEEE
Q 012799          358 ------GHQQLVNHVYFSPDGQWVASAS  379 (456)
Q Consensus       358 ------~~~~~v~~~~~sp~~~~l~s~~  379 (456)
                            .-.+...-+..|-||+.|...+
T Consensus       365 ~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  365 PVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             TTS------S----EEE-TTSSEEEEE-
T ss_pred             ccccccccCCCCCeEEEccCCeEEEEEe
Confidence                  0112345678888998877653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.43  E-value=2.1  Score=39.21  Aligned_cols=194  Identities=9%  Similarity=0.088  Sum_probs=83.8

Q ss_pred             CCCEEEEEe-CCCeEEEEeCCCCCCccc---cccC---cc----cceEEEEecccccCCCCCEEEEEe------CCCcEE
Q 012799          161 DGKHLVSGS-KAGELQCWDPQTGKPSGN---PLSG---HK----KWITGISWEPVHLNAPCRRFVSAS------KDGDAR  223 (456)
Q Consensus       161 ~~~~l~s~~-~dg~i~vwd~~~~~~~~~---~~~~---~~----~~v~~~~~~~~~~~~~~~~l~~~~------~dg~i~  223 (456)
                      +.++|+..+ ..+.|.|.|+.+.....+   .+..   +.    ..-..+--.|     +|+.++++-      .-|.+.
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-----~G~imIS~lGd~~G~g~Ggf~  160 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-----DGRIMISALGDADGNGPGGFV  160 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-----S--EEEEEEEETTS-S--EEE
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-----CccEEEEeccCCCCCCCCcEE
Confidence            456777766 577899999885432111   1111   00    0111111122     677777742      234678


Q ss_pred             EEECCCCeEEEEecCcC---ccEEEEEeCCCC-eEEEEe--------------------CCCcEEEEECCCCeEEEEeec
Q 012799          224 IWDVSLRKCVICLSGHT---LAVTCVKWGGDG-VIYTGS--------------------QDCTIKVWETTQGKLIRELKG  279 (456)
Q Consensus       224 iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~-~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~  279 (456)
                      ++|-++.+.........   ..-..+-|.|.. .+++..                    ...++.+||+.+.+.++++..
T Consensus       161 llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL  240 (461)
T PF05694_consen  161 LLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL  240 (461)
T ss_dssp             EE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred             EEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence            88877766665554322   223445555544 444432                    246799999999999999875


Q ss_pred             CC--cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC------
Q 012799          280 HG--HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ------  351 (456)
Q Consensus       280 ~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------  351 (456)
                      ..  .....+.|..+..-                                 ..-++.+.-.++|..|--.....      
T Consensus       241 g~~g~~pLEvRflH~P~~---------------------------------~~gFvg~aLss~i~~~~k~~~g~W~a~kV  287 (461)
T PF05694_consen  241 GEEGQMPLEVRFLHDPDA---------------------------------NYGFVGCALSSSIWRFYKDDDGEWAAEKV  287 (461)
T ss_dssp             -TTEEEEEEEEE-SSTT-----------------------------------EEEEEEE--EEEEEEEE-ETTEEEEEEE
T ss_pred             CCCCCceEEEEecCCCCc---------------------------------cceEEEEeccceEEEEEEcCCCCeeeeEE
Confidence            43  23445555544110                                 11133333444454443211110      


Q ss_pred             ---------------CccccccccccEeEEEECCCCCEEEEEE-CCCcEEEEeCCCC
Q 012799          352 ---------------PKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTG  392 (456)
Q Consensus       352 ---------------~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~  392 (456)
                                     .+..+..-..-|+.+..|.|.++|...+ .+|.|+.||+.+.
T Consensus       288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             EECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence                           0011111235589999999999987655 6899999999873

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.41  E-value=1.7  Score=38.19  Aligned_cols=228  Identities=14%  Similarity=0.119  Sum_probs=104.6

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe---cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CCCc
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT---GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT-GKPS  185 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~  185 (456)
                      ...++.|..+ ..+++| ..+ +.+...+.++.-..+.   .-......+....++..++ .+..|.  ||.... |+.-
T Consensus        63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~--iy~T~DgG~tW  136 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGA--IYRTTDGGKTW  136 (302)
T ss_dssp             EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT----EEEESSTTSSE
T ss_pred             eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCc--EEEeCCCCCCe
Confidence            3567777643 445554 344 4444444454333322   1223334444444443333 344454  333333 3322


Q ss_pred             cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEE
Q 012799          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV  265 (456)
Q Consensus       186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i  265 (456)
                      ..........+..+...+     +|.+++++.......-||-....-...-......|..|.|.|++.|......|.|+.
T Consensus       137 ~~~~~~~~gs~~~~~r~~-----dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~  211 (302)
T PF14870_consen  137 QAVVSETSGSINDITRSS-----DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQF  211 (302)
T ss_dssp             EEEE-S----EEEEEE-T-----TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEE
T ss_pred             eEcccCCcceeEeEEECC-----CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEE
Confidence            222334446677777666     888888887766667888654322222333568899999999996666778899988


Q ss_pred             EEC-CCCeEEEE----eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799          266 WET-TQGKLIRE----LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (456)
Q Consensus       266 wd~-~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  340 (456)
                      =+. ...+....    +....-.+..+++.++.                                    + +.+++..|.
T Consensus       212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~------------------------------------~-~wa~gg~G~  254 (302)
T PF14870_consen  212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN------------------------------------E-IWAVGGSGT  254 (302)
T ss_dssp             EE-TTEEEEE---B-TTSS--S-EEEEEESSSS--------------------------------------EEEEESTT-
T ss_pred             ccCCCCccccccccCCcccCceeeEEEEecCCC------------------------------------C-EEEEeCCcc
Confidence            872 22222111    11122336777777652                                    2 444555565


Q ss_pred             EEEEecCCCCCCcccc--ccccccEeEEEECCCCCEEEEEECCCcEEEE
Q 012799          341 MFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (456)
Q Consensus       341 i~iwd~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw  387 (456)
                      +..=. ..++.-.+..  ..-......+.|.++.+-++. +.+|.+.-|
T Consensus       255 l~~S~-DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  255 LLVST-DGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY  301 (302)
T ss_dssp             EEEES-STTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             EEEeC-CCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence            54432 3333322221  122345778888765544554 468876654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.28  E-value=2.1  Score=38.53  Aligned_cols=50  Identities=26%  Similarity=0.338  Sum_probs=33.9

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcc---eeEE----ecCCCCEEEEEEcCC
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKC----TGHKNWVLCIAWSAD  161 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~---~~~~----~~~~~~v~~~~~~~~  161 (456)
                      .-++|+|.|||+++++ ...|.|++++ ..+..   +..+    .........++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            3578999999987665 5699999999 33332   2222    234567899999994

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK10115 protease 2; Provisional

Probab=95.23  E-value=3.8  Score=41.12  Aligned_cols=110  Identities=7%  Similarity=0.019  Sum_probs=64.9

Q ss_pred             CCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC------
Q 012799          151 NWVLCIAWSADGKHLVSGSKA-----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD------  219 (456)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------  219 (456)
                      -.+..+.|+||+++|+.+...     ..|++.|+.+|..+...+..-.   ..++|.+     +++.|+....+      
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~-----D~~~~~y~~~~~~~~~~  198 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWAN-----DSWTFYYVRKHPVTLLP  198 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEee-----CCCEEEEEEecCCCCCC
Confidence            346678899999988875332     3589999998874432332221   4588988     77767665442      


Q ss_pred             CcEEEEECCCC--eEEEEecCcCccEE-EEEeCCCC-eEEEEeC---CCcEEEEEC
Q 012799          220 GDARIWDVSLR--KCVICLSGHTLAVT-CVKWGGDG-VIYTGSQ---DCTIKVWET  268 (456)
Q Consensus       220 g~i~iwd~~~~--~~~~~~~~~~~~v~-~~~~~~~~-~l~~~~~---dg~i~iwd~  268 (456)
                      ..|+.+++.++  +-...+........ ....+.++ .++..+.   ++.+.+++.
T Consensus       199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            36788888877  33333333222222 33334355 3333332   356888884

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.20  E-value=0.73  Score=46.76  Aligned_cols=143  Identities=15%  Similarity=0.109  Sum_probs=89.5

Q ss_pred             CCEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCCCcc----ccccCc------ccceEEEEecccccCCCCCEEEEEeC
Q 012799          151 NWVLCIAWSADGKHLVSG--SKAGELQCWDPQTGKPSG----NPLSGH------KKWITGISWEPVHLNAPCRRFVSASK  218 (456)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~~----~~~~~~------~~~v~~~~~~~~~~~~~~~~l~~~~~  218 (456)
                      -.+..+...+|+...++.  +.+-.|..||+++-....    ..+..|      .....++.|.|.-.    ...+....
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp----~n~av~l~  176 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP----LNSAVDLS  176 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc----chhhhhcc
Confidence            455666666776655443  333478999987543211    112212      23345677887432    24667778


Q ss_pred             CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeec----CCcceEEEEecCcc
Q 012799          219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG----HGHWVNSLALSTEY  293 (456)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~~~~~  293 (456)
                      |+.|++..+........-.......+|++|+|.| .+++|...|++.-|-.. .+....+..    ....|.+++|-...
T Consensus       177 dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  177 DLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             ccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence            8889888775443332222346678999999999 99999999999998654 333333322    24678899988776


Q ss_pred             eeeec
Q 012799          294 ALRTG  298 (456)
Q Consensus       294 ~~~~~  298 (456)
                      .+...
T Consensus       256 eflvv  260 (1405)
T KOG3630|consen  256 EFLVV  260 (1405)
T ss_pred             eEEEE
Confidence            55443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.19  E-value=3.4  Score=40.31  Aligned_cols=53  Identities=13%  Similarity=0.299  Sum_probs=39.0

Q ss_pred             CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799          128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (456)
Q Consensus       128 ~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  182 (456)
                      .-..|+||++. |..+..+.-....+..+.|+.+. .|+....+|++++|++...
T Consensus        62 a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge  114 (829)
T KOG2280|consen   62 ARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGE  114 (829)
T ss_pred             cceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchh
Confidence            34568999975 66666555455588999999665 5666689999999998643

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.14  E-value=2.1  Score=37.66  Aligned_cols=58  Identities=17%  Similarity=0.221  Sum_probs=31.0

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (456)
Q Consensus       329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  388 (456)
                      +.+++++..-....-||.-.. .-..........|..+.|+|++.+.+.+ ..|.|++=+
T Consensus       156 G~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  156 GRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             S-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             CcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            455666654444556773221 1122223345779999999998876654 788888877

>PHA02790 Kelch-like protein; Provisional

Probab=95.14  E-value=2.1  Score=40.98  Aligned_cols=141  Identities=7%  Similarity=-0.045  Sum_probs=66.1

Q ss_pred             CCCeEEEEECCC-----cEEEEeCCCCccee--EEecCCCCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCCCccc-c
Q 012799          119 DGRQLASGSGDT-----TVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPSGN-P  188 (456)
Q Consensus       119 ~~~~l~~~~~d~-----~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~-~  188 (456)
                      ++.+++.|+.++     .+..||..+++-..  .+.........+.  -++...+.||.++  .+..||..+++-... .
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            456667777543     46677776543211  1111111122222  3677777777643  577888765532210 1


Q ss_pred             ccCcccceEEEEecccccCCCCCEEEEEeCCC---cEEEEECCCCeEEEE--ecCcCccEEEEEeCCCCeEEEEeCCCcE
Q 012799          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDG---DARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGVIYTGSQDCTI  263 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~dg~i  263 (456)
                      +.........+..       ++...+.||.++   .+..||.++.+-...  +...... .+++. -++.+++.+  |.+
T Consensus       349 l~~~r~~~~~~~~-------~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~~-~~~~IYv~G--G~~  417 (480)
T PHA02790        349 LLKPRCNPAVASI-------NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCALV-FGRRLFLVG--RNA  417 (480)
T ss_pred             CCCCCcccEEEEE-------CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEEE-ECCEEEEEC--Cce
Confidence            1111111111221       667778887654   467788766543221  1111111 12222 234444333  356


Q ss_pred             EEEECCCCe
Q 012799          264 KVWETTQGK  272 (456)
Q Consensus       264 ~iwd~~~~~  272 (456)
                      .+||.++++
T Consensus       418 e~ydp~~~~  426 (480)
T PHA02790        418 EFYCESSNT  426 (480)
T ss_pred             EEecCCCCc
Confidence            778877654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.11  E-value=1.8  Score=36.81  Aligned_cols=171  Identities=19%  Similarity=0.122  Sum_probs=104.3

Q ss_pred             EEEEEECCCCCeEEEEECCC--cEEEEeCCCCcceeEEecC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799          111 VLSVAFSPDGRQLASGSGDT--TVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (456)
Q Consensus       111 V~~~~~s~~~~~l~~~~~d~--~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  187 (456)
                      ...+.|..+|.++-+.+.-|  .|+.+|+.+++......-. .----.++.. +++.....-.++...+||.++-+.+..
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence            45678877888888877655  7999999999877654421 2222333433 333444445688999999988766553


Q ss_pred             cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc-----CccEEEEEeCCCCeEEEE-eCCC
Q 012799          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-----TLAVTCVKWGGDGVIYTG-SQDC  261 (456)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~l~~~-~~dg  261 (456)
                      ..  ..+.-+.++.       ++..|+.......++.+|..+.+....+.-.     -..++.+.|. +|.+++- =...
T Consensus       126 ~~--y~~EGWGLt~-------dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td  195 (264)
T PF05096_consen  126 FP--YPGEGWGLTS-------DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD  195 (264)
T ss_dssp             EE---SSS--EEEE-------CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS
T ss_pred             Ee--cCCcceEEEc-------CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC
Confidence            22  2344556663       6778888887889999999877666655322     1245566666 5544443 3456


Q ss_pred             cEEEEECCCCeEEEEeec---------------CCcceEEEEecCc
Q 012799          262 TIKVWETTQGKLIRELKG---------------HGHWVNSLALSTE  292 (456)
Q Consensus       262 ~i~iwd~~~~~~~~~~~~---------------~~~~i~~~~~~~~  292 (456)
                      .|...|..+|+....+..               ...-.+.|++.|.
T Consensus       196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~  241 (264)
T PF05096_consen  196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE  241 (264)
T ss_dssp             EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred             eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence            788889999988776521               1245778888776

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.06  E-value=0.15  Score=29.34  Aligned_cols=31  Identities=32%  Similarity=0.411  Sum_probs=26.2

Q ss_pred             ccEEEEEECCC-C--CeEEEEECCCcEEEEeCCC
Q 012799          109 EAVLSVAFSPD-G--RQLASGSGDTTVRLWDLNT  139 (456)
Q Consensus       109 ~~V~~~~~s~~-~--~~l~~~~~d~~v~vwd~~~  139 (456)
                      ++|.++.|+|+ +  ++|+.+-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            47899999984 4  5888888889999999985

It contains a characteristic DLL sequence motif.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.92  E-value=0.51  Score=43.41  Aligned_cols=138  Identities=15%  Similarity=0.278  Sum_probs=85.9

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (456)
                      .+..|.....++-.|+..|+.+.....+...  -+.+.|...+.                             ......-
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~-----------------------------qmt~eqt  530 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQ-----------------------------QMTDEQT  530 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHH-----------------------------hcCccce
Confidence            4445666677888899999999888766554  56666653220                             0012334


Q ss_pred             EEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC----CCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP----DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      +.|-.+..|.-.|++.....+... .....++.-.||.    .+.++|.|+..|.|++||--.-+....+.+....|..+
T Consensus       531 lvGlS~~svFrIDPR~~gNKi~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~i  609 (776)
T COG5167         531 LVGLSDYSVFRIDPRARGNKIKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHI  609 (776)
T ss_pred             EEeecccceEEecccccCCceeee-eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeee
Confidence            566677777777876655322211 1122222223332    45589999999999999965444444566677778777


Q ss_pred             EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (456)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~  449 (456)
                                                 ..+.+|+++++.+.
T Consensus       610 ---------------------------dvta~Gk~ilaTCk  623 (776)
T COG5167         610 ---------------------------DVTANGKHILATCK  623 (776)
T ss_pred             ---------------------------EeecCCcEEEEeec
Confidence                                       66888887665544

>PHA02790 Kelch-like protein; Provisional

Probab=94.82  E-value=3.6  Score=39.34  Aligned_cols=103  Identities=10%  Similarity=0.041  Sum_probs=48.9

Q ss_pred             CCCEEEEEeCCC-----eEEEEeCCCCCCccc-cccCcccceEEEEecccccCCCCCEEEEEeCC--CcEEEEECCCCeE
Q 012799          161 DGKHLVSGSKAG-----ELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKD--GDARIWDVSLRKC  232 (456)
Q Consensus       161 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~  232 (456)
                      ++..+++||.++     .+..||..++.-... .+.........+..       ++...+.||.+  ..+..||..+.+-
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~-------~~~iYviGG~~~~~sve~ydp~~n~W  343 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA-------NNKLYVVGGLPNPTSVERWFHGDAAW  343 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE-------CCEEEEECCcCCCCceEEEECCCCeE
Confidence            455667777543     477788876542211 11111111111221       56677788764  3577888765432


Q ss_pred             EE--EecCcCccEEEEEeCCCC-eEEEEeCCC---cEEEEECCCCe
Q 012799          233 VI--CLSGHTLAVTCVKWGGDG-VIYTGSQDC---TIKVWETTQGK  272 (456)
Q Consensus       233 ~~--~~~~~~~~v~~~~~~~~~-~l~~~~~dg---~i~iwd~~~~~  272 (456)
                      ..  .+....... +++.. +| ..+.|+.++   .+..||.++.+
T Consensus       344 ~~~~~l~~~r~~~-~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~  387 (480)
T PHA02790        344 VNMPSLLKPRCNP-AVASI-NNVIYVIGGHSETDTTTEYLLPNHDQ  387 (480)
T ss_pred             EECCCCCCCCccc-EEEEE-CCEEEEecCcCCCCccEEEEeCCCCE
Confidence            22  111111111 22222 34 445555443   46677776654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.81  E-value=0.0031  Score=56.71  Aligned_cols=145  Identities=18%  Similarity=0.301  Sum_probs=99.7

Q ss_pred             EEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCcccccc
Q 012799          112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLS  190 (456)
Q Consensus       112 ~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~  190 (456)
                      ....|-|.+.-++.++.+..+..||-. ++...... ..+....++|..++..++ .+-..+.+.+||+.+.........
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g  115 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG  115 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence            345667766668888888888899844 34333332 455667788888776555 455678999999986543321111


Q ss_pred             CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEE
Q 012799          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK  264 (456)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~  264 (456)
                      + ...-.-+.|++     ....++.+...|.+.+++..+.+.+.....|...++++++.+.++.+.++.|..+.
T Consensus       116 g-~~s~sll~wsK-----g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~  183 (615)
T KOG2247|consen  116 G-TSSKSLLAWSK-----GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS  183 (615)
T ss_pred             C-cchHHHHhhcc-----CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHH
Confidence            1 11111256766     66778888889999999998877776666699999999999998777776665443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.75  E-value=0.97  Score=44.31  Aligned_cols=117  Identities=13%  Similarity=0.145  Sum_probs=80.8

Q ss_pred             cEEEEEECC--CCCeEEEEECCCcEEEEeCCC-------C-------------cceeEEecCCCCEEEEEEc--CCCCEE
Q 012799          110 AVLSVAFSP--DGRQLASGSGDTTVRLWDLNT-------Q-------------TPMFKCTGHKNWVLCIAWS--ADGKHL  165 (456)
Q Consensus       110 ~V~~~~~s~--~~~~l~~~~~d~~v~vwd~~~-------~-------------~~~~~~~~~~~~v~~~~~~--~~~~~l  165 (456)
                      .|+.|....  +...|+.+..||.|.+|.+++       .             ++...+. -...++.++++  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            455555543  456899999999999997531       0             0112222 34578999998  788899


Q ss_pred             EEEeCCCeEEEEeCCCC--CCccccccCcccceEEEEecccccCCCCC-EEEEEeCCCcEEEEEC
Q 012799          166 VSGSKAGELQCWDPQTG--KPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDV  227 (456)
Q Consensus       166 ~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~  227 (456)
                      |+++....|.||-....  +........+...|.+++|.+...+..|. .+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            99988888888865442  22111122466789999999877655554 7778888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.74  E-value=0.21  Score=28.75  Aligned_cols=31  Identities=19%  Similarity=0.276  Sum_probs=26.1

Q ss_pred             ccEeEEEECCCC---CEEEEEECCCcEEEEeCCC
Q 012799          361 QLVNHVYFSPDG---QWVASASFDKSIKLWNGTT  391 (456)
Q Consensus       361 ~~v~~~~~sp~~---~~l~s~~~dg~i~iwd~~~  391 (456)
                      +.++++.|||+.   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            358999999854   5888888889999999985

It contains a characteristic DLL sequence motif.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.73  E-value=2.5  Score=36.54  Aligned_cols=232  Identities=13%  Similarity=0.129  Sum_probs=116.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCC------CCCccccccC-----cccceEEEEecccc---cCC----CCCEE
Q 012799          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQT------GKPSGNPLSG-----HKKWITGISWEPVH---LNA----PCRRF  213 (456)
Q Consensus       152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~~~-----~~~~v~~~~~~~~~---~~~----~~~~l  213 (456)
                      .-+.|+++|.+.+-++....+...+||...      .+.+...+..     .....+.+.|+...   ...    ....|
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            457899999998888877788999999861      1111111111     12346667666411   011    12357


Q ss_pred             EEEeCCCcEEEEECCCCeE-----EEEec-CcCcc-EEEEEeCCC--C-eEE-EEeCCCcEEEEECCCCeEEEEeecCCc
Q 012799          214 VSASKDGDARIWDVSLRKC-----VICLS-GHTLA-VTCVKWGGD--G-VIY-TGSQDCTIKVWETTQGKLIRELKGHGH  282 (456)
Q Consensus       214 ~~~~~dg~i~iwd~~~~~~-----~~~~~-~~~~~-v~~~~~~~~--~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~  282 (456)
                      +.+++||+|.-|...-...     ...+. ..... -..+++...  + .|+ +--..++|.+||-.-.+.... .....
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~D  182 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFID  182 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCccC
Confidence            8899999999998532211     11221 11122 233444322  2 343 334577888887543222100 00000


Q ss_pred             ceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc--cccc
Q 012799          283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--TGHQ  360 (456)
Q Consensus       283 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~  360 (456)
                      +-.-..+.|-.....+     ...+.            .-....+....=+.|..-|.|-+||+.-.  .++.+  .+.-
T Consensus       183 P~iPagyAPFnIqnig-----~~lyV------------tYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~L  243 (336)
T TIGR03118       183 PALPAGYAPFNVQNLG-----GTLYV------------TYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGRL  243 (336)
T ss_pred             CCCCCCCCCcceEEEC-----CeEEE------------EEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCcc
Confidence            0000001110000000     00000            00000001112334455678899985432  23322  3334


Q ss_pred             ccEeEEEECC------CCCEEEEEECCCcEEEEeCCCCeEEEEEecccc
Q 012799          361 QLVNHVYFSP------DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG  403 (456)
Q Consensus       361 ~~v~~~~~sp------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  403 (456)
                      ...+.|+..|      .|.+|+---.||+|..||..+|+.+..+....+
T Consensus       244 NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G  292 (336)
T TIGR03118       244 NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN  292 (336)
T ss_pred             cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence            4567777766      467777766799999999999998888875544

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.68  E-value=3.5  Score=37.93  Aligned_cols=112  Identities=20%  Similarity=0.204  Sum_probs=71.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCccccccCc-ccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc
Q 012799          161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH  239 (456)
Q Consensus       161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  239 (456)
                      ++ .+..+..+|.|.-.|.+++..+....... ...+..-....     +| .++.++.+|.++.+|.++++.+......
T Consensus        68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-----~G-~i~~g~~~g~~y~ld~~~G~~~W~~~~~  140 (370)
T COG1520          68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-----DG-KIYVGSWDGKLYALDASTGTLVWSRNVG  140 (370)
T ss_pred             CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-----CC-eEEEecccceEEEEECCCCcEEEEEecC
Confidence            44 45555788888888988887543111111 11111111111     33 5888999999999999899988877655


Q ss_pred             C-ccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeec
Q 012799          240 T-LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG  279 (456)
Q Consensus       240 ~-~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  279 (456)
                      . ..+..-....++.++.++.+|.+...|..+++.......
T Consensus       141 ~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~  181 (370)
T COG1520         141 GSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYET  181 (370)
T ss_pred             CCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEec
Confidence            5 122233333455666666889999999999988776553

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.68  E-value=3.6  Score=38.08  Aligned_cols=147  Identities=13%  Similarity=0.092  Sum_probs=87.3

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcc----eeEEecCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEeCCCCCCc-----
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTP----MFKCTGHKNWVLCIAWSA-----DGKHLVSGSKAGELQCWDPQTGKPS-----  185 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~----~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~-----  185 (456)
                      ...+++|+..|.++||+......    +..-..-..+|..+..-.     +...||+ =.-..+.+|.+......     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence            46899999999999999754331    111123457788877643     2234444 45567888887322111     


Q ss_pred             ---cccccCcc--cceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC
Q 012799          186 ---GNPLSGHK--KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ  259 (456)
Q Consensus       186 ---~~~~~~~~--~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~  259 (456)
                         ......|.  .....+++-|..-...-.++.+-+.||.+.+++-+.-.....+.. .--...+.+.+.. .|++++.
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence               01122222  223444444433222346888899999999999776554444433 2222345666655 8888888


Q ss_pred             CCcEEEEEC
Q 012799          260 DCTIKVWET  268 (456)
Q Consensus       260 dg~i~iwd~  268 (456)
                      +..+..|..
T Consensus       195 s~~l~~Yky  203 (418)
T PF14727_consen  195 SWTLECYKY  203 (418)
T ss_pred             ceeEEEecH
Confidence            888888865

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.59  E-value=2.7  Score=38.56  Aligned_cols=143  Identities=13%  Similarity=0.123  Sum_probs=74.7

Q ss_pred             ccEEEEEECCCCCeEEEEE-----------CCC-cEEEEeCCC--Cc--ceeEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q 012799          109 EAVLSVAFSPDGRQLASGS-----------GDT-TVRLWDLNT--QT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAG  172 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~-----------~d~-~v~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  172 (456)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  ++  ....+.........+++.+++ +++ +....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            3456899999999777642           123 677775432  22  223333344556889999888 444 44443


Q ss_pred             eEEEEeCCCC-----CC--ccccccC----cccceEEEEecccccCCCCCEEEEEeCC-------------------CcE
Q 012799          173 ELQCWDPQTG-----KP--SGNPLSG----HKKWITGISWEPVHLNAPCRRFVSASKD-------------------GDA  222 (456)
Q Consensus       173 ~i~vwd~~~~-----~~--~~~~~~~----~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------------------g~i  222 (456)
                      ..++.|....     +.  +...+..    +......+.|.|     +|.+.++-+..                   |.|
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-----DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i  166 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-----DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL  166 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-----CCCEEEecccCCCceeccCCCccCcccccCceE
Confidence            3334454321     11  1111111    123466778877     77766654421                   345


Q ss_pred             EEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeC
Q 012799          223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ  259 (456)
Q Consensus       223 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~  259 (456)
                      .-++...++....-.+ -.....++|+++|.++++..
T Consensus       167 ~r~~pdg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       167 FRYNPDGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             EEEecCCCeEEEEecC-cCCCccceECCCCCEEEEcc
Confidence            5555544443222222 23345778888774444433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.44  E-value=0.04  Score=53.69  Aligned_cols=169  Identities=14%  Similarity=0.199  Sum_probs=104.9

Q ss_pred             ccccCCcccEEEEEECCC-CCeEEEEECCCcEEEEeCCC--Ccce-----eEEecCCCCEEEEEEcC---CCCEEEEEeC
Q 012799          102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNT--QTPM-----FKCTGHKNWVLCIAWSA---DGKHLVSGSK  170 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~--~~~~-----~~~~~~~~~v~~~~~~~---~~~~l~s~~~  170 (456)
                      ..++|..+.|-.++|... ...++  -.-|.+.||+++-  |+..     .....-...+.-+.|.|   +.-++..+-.
T Consensus       126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~  203 (1283)
T KOG1916|consen  126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK  203 (1283)
T ss_pred             HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence            456788889999988642 12222  2335688898752  3322     22223344456667766   6677888888


Q ss_pred             CCeEEEEeCCCCCCccccccCcccceEEEEeccc------ccCCCCCEEEEEeCCCcEEEEECC-----CCeEEEEecCc
Q 012799          171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV------HLNAPCRRFVSASKDGDARIWDVS-----LRKCVICLSGH  239 (456)
Q Consensus       171 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~  239 (456)
                      ++.+++.+++....  ..+.+|...+..++|...      ..++||..|+.+..||.++.|.+.     ...|+...+.|
T Consensus       204 ~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph  281 (1283)
T KOG1916|consen  204 GGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH  281 (1283)
T ss_pred             CCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence            89999988776543  356668888877766442      245699999999999998888753     33445555666


Q ss_pred             C-ccEEEEEeCCC-------C---eEEEEe-CCCcEEEEECCCCeEE
Q 012799          240 T-LAVTCVKWGGD-------G---VIYTGS-QDCTIKVWETTQGKLI  274 (456)
Q Consensus       240 ~-~~v~~~~~~~~-------~---~l~~~~-~dg~i~iwd~~~~~~~  274 (456)
                      . .+-.|.-++.+       +   .+++++ .+..+++|.....+++
T Consensus       282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            5 34334334321       1   233333 3456888887666655

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.31  E-value=3.1  Score=35.79  Aligned_cols=135  Identities=19%  Similarity=0.134  Sum_probs=78.2

Q ss_pred             CEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEE-C
Q 012799          152 WVLCIAWSADGKHLVSGS---KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD-V  227 (456)
Q Consensus       152 ~v~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd-~  227 (456)
                      .+.+.+++++++.++...   ....+.++...  ........  ...+....|.+     ++...+....+...+++. .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~--g~~l~~PS~d~-----~g~~W~v~~~~~~~~~~~~~   95 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT--GGSLTRPSWDP-----DGWVWTVDDGSGGVRVVRDS   95 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc--CCccccccccC-----CCCEEEEEcCCCceEEEEec
Confidence            688999999999887765   23345555543  33222222  23667778877     766666666666666663 2


Q ss_pred             CCCeEE-EEe--cCcCccEEEEEeCCCC-eEEEEe---CCCcEEEEECC---CC------eEEEEeecCCcceEEEEecC
Q 012799          228 SLRKCV-ICL--SGHTLAVTCVKWGGDG-VIYTGS---QDCTIKVWETT---QG------KLIRELKGHGHWVNSLALST  291 (456)
Q Consensus       228 ~~~~~~-~~~--~~~~~~v~~~~~~~~~-~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~~~~~i~~~~~~~  291 (456)
                      ..++.. ...  ......|+.+.++||| +++...   .++.|.+--+.   .+      ............+..+.|.+
T Consensus        96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen   96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence            232221 111  1112289999999999 544433   35667665432   22      11122223356788899988


Q ss_pred             ccee
Q 012799          292 EYAL  295 (456)
Q Consensus       292 ~~~~  295 (456)
                      +..+
T Consensus       176 ~~~L  179 (253)
T PF10647_consen  176 DSTL  179 (253)
T ss_pred             CCEE
Confidence            7543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.25  E-value=2  Score=39.13  Aligned_cols=152  Identities=13%  Similarity=0.169  Sum_probs=90.1

Q ss_pred             EEEEECCCCCeEEEEECCCcEEEEeCCCC---cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       112 ~~~~~s~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      +.+-|....+.|++. ..|.+.=|-+...   -++.-.....++|.++.|++|.+.||+--.+.+|.+++....+.....
T Consensus        26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            345555444444333 3344555544322   223333346779999999999999999999999999998544432211


Q ss_pred             c---cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-CeEEEEecCcCccEEEEEeCCCC--eEEEEe-CCC
Q 012799          189 L---SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG--VIYTGS-QDC  261 (456)
Q Consensus       189 ~---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~-~dg  261 (456)
                      .   ......|.+..|..     + .-++..+..| +-+|.... ...++..+.|+..|.-..|.++.  .+++.+ ..+
T Consensus       105 ~~~ck~k~~~IlGF~W~~-----s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n  177 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTS-----S-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLEN  177 (657)
T ss_pred             HHHhccCcceeEEEEEec-----C-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccc
Confidence            1   22234588888876     3 3455555444 55665433 23344556778888888898877  333333 444


Q ss_pred             cEEEEECCCC
Q 012799          262 TIKVWETTQG  271 (456)
Q Consensus       262 ~i~iwd~~~~  271 (456)
                      .+.=+.++++
T Consensus       178 ~lnpf~~~~~  187 (657)
T KOG2377|consen  178 VLNPFHFRAG  187 (657)
T ss_pred             ccccEEEeec
Confidence            5555555544

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.21  E-value=3.5  Score=37.84  Aligned_cols=19  Identities=21%  Similarity=0.364  Sum_probs=14.3

Q ss_pred             ccEeEEEECCCCCEEEEEE
Q 012799          361 QLVNHVYFSPDGQWVASAS  379 (456)
Q Consensus       361 ~~v~~~~~sp~~~~l~s~~  379 (456)
                      .....++|.|||.+.++-+
T Consensus       124 ~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             ccccCceECCCCCEEEecc
Confidence            4477899999998766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.02  E-value=0.5  Score=47.87  Aligned_cols=140  Identities=12%  Similarity=0.100  Sum_probs=88.6

Q ss_pred             ccEEEEEECCCCCeEEEEE--CCCcEEEEeCCCCcce-----eEE------ecCCCCEEEEEEcCCC-CEEEEEeCCCeE
Q 012799          109 EAVLSVAFSPDGRQLASGS--GDTTVRLWDLNTQTPM-----FKC------TGHKNWVLCIAWSADG-KHLVSGSKAGEL  174 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~--~d~~v~vwd~~~~~~~-----~~~------~~~~~~v~~~~~~~~~-~~l~s~~~dg~i  174 (456)
                      -+|..+...+|+...++..  .+-.|..||+.+-..-     .-+      ........++.|+|.- ...+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            3566666777776555443  3337888998653211     111      1233456788898842 345667788999


Q ss_pred             EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC----cCccEEEEEeCC
Q 012799          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG----HTLAVTCVKWGG  250 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~  250 (456)
                      ++..+......... .......++++|+|     .|..+++|-..|++.-|...-. ....+.+    ....|.+++|..
T Consensus       181 ~V~~~~~~~~~v~s-~p~t~~~Tav~WSp-----rGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTS-FPVTNSQTAVLWSP-----RGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhcc-cCcccceeeEEecc-----ccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEec
Confidence            98877644333211 23456789999999     9999999999999998865422 2222211    247799999987


Q ss_pred             CCeEE
Q 012799          251 DGVIY  255 (456)
Q Consensus       251 ~~~l~  255 (456)
                      ...++
T Consensus       254 t~efl  258 (1405)
T KOG3630|consen  254 TQEFL  258 (1405)
T ss_pred             ceeEE
Confidence            76333

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.95  E-value=3.6  Score=35.13  Aligned_cols=120  Identities=15%  Similarity=0.106  Sum_probs=73.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799          151 NWVLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (456)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  228 (456)
                      .-...+.|..+|.++-+.+.-|  .|+.+|+.+++..........-.-..+...      ++..+.-.=.++...+||..
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~------~d~l~qLTWk~~~~f~yd~~  118 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL------GDKLYQLTWKEGTGFVYDPN  118 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE------TTEEEEEESSSSEEEEEETT
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE------CCEEEEEEecCCeEEEEccc
Confidence            3356788877888888887766  699999999986542222222222333332      22333344457899999999


Q ss_pred             CCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEee
Q 012799          229 LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK  278 (456)
Q Consensus       229 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  278 (456)
                      +.+.+.++.- .+.=..++...+ .|+.+.....++++|..+.+..+.+.
T Consensus       119 tl~~~~~~~y-~~EGWGLt~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~  166 (264)
T PF05096_consen  119 TLKKIGTFPY-PGEGWGLTSDGK-RLIMSDGSSRLYFLDPETFKEVRTIQ  166 (264)
T ss_dssp             TTEEEEEEE--SSS--EEEECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred             cceEEEEEec-CCcceEEEcCCC-EEEEECCccceEEECCcccceEEEEE
Confidence            9988887753 345566664433 67777777889999998877766654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.82  E-value=1.2  Score=43.14  Aligned_cols=112  Identities=13%  Similarity=0.223  Sum_probs=70.4

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEc--CCCCEEEEEeCCCeEEEEeCCC----
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWS--ADGKHLVSGSKAGELQCWDPQT----  181 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~s~~~dg~i~vwd~~~----  181 (456)
                      ....-+.-+.-++.-++-+....+.|||...+.....-. ...+.|.++.|.  |+++.+++.|..+.|.+|....    
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344455555555544444445589999998876443322 457889999997  5899999999999999996431    


Q ss_pred             -CCCc----cc-cccCcc-cceEEEEecccccCCCCCEEEEEeCCCcEEEEEC
Q 012799          182 -GKPS----GN-PLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (456)
Q Consensus       182 -~~~~----~~-~~~~~~-~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  227 (456)
                       ..+.    .. .+..+. .+|.+..|.+     +|..++.+|  +.+.|+|-
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-----~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLK-----DGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEec-----CCeEEEEeC--CEEEEECC
Confidence             1111    10 112233 5677888877     664444333  56888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.47  E-value=2.4  Score=31.68  Aligned_cols=116  Identities=10%  Similarity=0.007  Sum_probs=72.5

Q ss_pred             EEECCCCCeEEEEECCCcEEEEeCCCCc--------ceeEEecCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEeCC
Q 012799          114 VAFSPDGRQLASGSGDTTVRLWDLNTQT--------PMFKCTGHKNWVLCIAWSA-----DGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       114 ~~~s~~~~~l~~~~~d~~v~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~i~vwd~~  180 (456)
                      -.|......|++++.-|+|.|++.....        .+..+. -...|++++-.+     +...|+.|+. ..+..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence            4566566678888888999999865332        233333 556778776544     3456666655 579999999


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC  235 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  235 (456)
                      .+..+.  .+.-...|.++.+-...-  ...-++..+.+..|.-||.+..+...+
T Consensus        82 ~N~d~F--yke~~DGvn~i~~g~~~~--~~~~l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   82 NNSDLF--YKEVPDGVNAIVIGKLGD--IPSPLVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             cCchhh--hhhCccceeEEEEEecCC--CCCcEEEECceEEEEEeCCCCcEEEEE
Confidence            887653  445557788877754321  223445555556777777665554443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.41  E-value=0.035  Score=54.12  Aligned_cols=69  Identities=17%  Similarity=0.178  Sum_probs=48.5

Q ss_pred             EEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEE-----------EcCCCCEEEEEeCCCeEEEEeC
Q 012799          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA-----------WSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      |.-+-|.++.-++..+-.++.|++.+.++... ..+.+|..+++.++           .+|||+.+++++.||.++.|.+
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            33334444666777777888999887765433 33445776666554           5899999999999999998876


Q ss_pred             C
Q 012799          180 Q  180 (456)
Q Consensus       180 ~  180 (456)
                      .
T Consensus       265 y  265 (1283)
T KOG1916|consen  265 Y  265 (1283)
T ss_pred             e
Confidence            4

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.32  E-value=2.3  Score=41.30  Aligned_cols=70  Identities=14%  Similarity=0.304  Sum_probs=47.1

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      ...-++++.-+|.|+-++.++.||+|++|+.........+. ...+-..+.|...|  |++...|..+.-|.-
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKE   82 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeec
Confidence            45667888999999999999999999999986544322221 22334445564444  555666666666753

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.25  E-value=6.8  Score=36.19  Aligned_cols=145  Identities=17%  Similarity=0.154  Sum_probs=82.4

Q ss_pred             cEEEEEECCCCCeEEEEECCCcE-EEEeCCCCcce--eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTV-RLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--  184 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v-~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--  184 (456)
                      ....+..+++|.+++.+. .|.+ +-||  .+...  ..-......++.+.|.+++..++++ .+|.+. +....++.  
T Consensus       240 sf~~v~~~~dG~~~~vg~-~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~  314 (398)
T PLN00033        240 TFSTVNRSPDGDYVAVSS-RGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEE  314 (398)
T ss_pred             ceeeEEEcCCCCEEEEEC-CccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccc
Confidence            345567778888777764 4433 3343  23221  1112345678999999998877665 556543 33333431  


Q ss_pred             ---cccc-ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCccEEEEEeCCCCeEEEE
Q 012799          185 ---SGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCVKWGGDGVIYTG  257 (456)
Q Consensus       185 ---~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~l~~~  257 (456)
                         .... .......+.++.|.+     ++. ++.++..|.+.... ..++.-...   ..-......+.|.+++..++.
T Consensus       315 ~~~f~~~~~~~~~~~l~~v~~~~-----d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~  387 (398)
T PLN00033        315 DFDFEEADIKSRGFGILDVGYRS-----KKE-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL  387 (398)
T ss_pred             ccceeecccCCCCcceEEEEEcC-----CCc-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE
Confidence               1101 111223477888776     544 55566667666653 333332222   223456889998887777888


Q ss_pred             eCCCcEEEE
Q 012799          258 SQDCTIKVW  266 (456)
Q Consensus       258 ~~dg~i~iw  266 (456)
                      +.+|.|.-|
T Consensus       388 G~~G~il~~  396 (398)
T PLN00033        388 GNDGVLLRY  396 (398)
T ss_pred             eCCcEEEEe
Confidence            888887655

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.23  E-value=10  Score=38.11  Aligned_cols=78  Identities=22%  Similarity=0.224  Sum_probs=54.9

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CCC--ccc--------cccCcccceEEEEecccccCCCCC
Q 012799          151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQT---------GKP--SGN--------PLSGHKKWITGISWEPVHLNAPCR  211 (456)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~--~~~--------~~~~~~~~v~~~~~~~~~~~~~~~  211 (456)
                      -.|..+.++|+|++++..|..|.+.+.=.+.         |+.  .++        ....+...|..+.|+|..  .++.
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s--~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS--ESDS  162 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC--CCCC
Confidence            4688999999999999998877544432221         111  110        112445678999999953  3568


Q ss_pred             EEEEEeCCCcEEEEECCCC
Q 012799          212 RFVSASKDGDARIWDVSLR  230 (456)
Q Consensus       212 ~l~~~~~dg~i~iwd~~~~  230 (456)
                      +|++-..|+.+++||+...
T Consensus       163 ~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             eEEEEecCCEEEEEecCCC
Confidence            9999999999999999643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.00  E-value=12  Score=38.13  Aligned_cols=136  Identities=12%  Similarity=0.025  Sum_probs=77.4

Q ss_pred             cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCC-C
Q 012799          131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA-P  209 (456)
Q Consensus       131 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~  209 (456)
                      .||+++-.  .....+. ....++..+.+.+...++.++.++.+...++..+.............|.|+.++|..-.+ .
T Consensus       471 ~iRl~ss~--~~~~~W~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~  547 (1096)
T KOG1897|consen  471 SIRLVSSA--GLRSEWR-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNK  547 (1096)
T ss_pred             cEEEEcch--hhhhccc-CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCc
Confidence            46666643  2233333 234455555555666777777777787777776653322233445789999999864222 2


Q ss_pred             CCEEEEEeCCCcEEEEECC-CCeEEEE--ecC--cCccEEEEEeCCCC-eEEEEeCCCcEEEEECC
Q 012799          210 CRRFVSASKDGDARIWDVS-LRKCVIC--LSG--HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT  269 (456)
Q Consensus       210 ~~~l~~~~~dg~i~iwd~~-~~~~~~~--~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~  269 (456)
                      .+.++.|.++..+.+.-.- ....+..  +.+  -...|.-..+-.+. +|+++..||.+.-|-+.
T Consensus       548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d  613 (1096)
T KOG1897|consen  548 SRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD  613 (1096)
T ss_pred             ceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence            3477888887765554332 2222111  111  12334445555544 89999999998766443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.79  E-value=1.2  Score=37.33  Aligned_cols=67  Identities=15%  Similarity=0.220  Sum_probs=50.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEe-------c-------CcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEE
Q 012799          209 PCRRFVSASKDGDARIWDVSLRKCVICL-------S-------GHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI  274 (456)
Q Consensus       209 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  274 (456)
                      ++.++++.+.+|.+++||+.+++.+..-       .       .....|..+.++.+|..++.-.+|..+.||..-+.-+
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~W~  100 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGCWI  100 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccceeE
Confidence            6789999999999999999988765432       1       2456788999998885555556788999987765443


Q ss_pred             E
Q 012799          275 R  275 (456)
Q Consensus       275 ~  275 (456)
                      .
T Consensus       101 ~  101 (219)
T PF07569_consen  101 R  101 (219)
T ss_pred             E
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.75  E-value=1.5  Score=39.98  Aligned_cols=95  Identities=17%  Similarity=0.276  Sum_probs=69.1

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce----eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  182 (456)
                      ..++|.++.||+|.+.||.--.+++|.+++....+..    .+.+.....|....|+.+ .-+|..+..| +-+|.+...
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            4669999999999999999999999999998544332    233445566889999855 5666665554 677776655


Q ss_pred             CCccccccCcccceEEEEecc
Q 012799          183 KPSGNPLSGHKKWITGISWEP  203 (456)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~  203 (456)
                      +...+....|...|.-..|.+
T Consensus       143 krslRlVks~~~nvnWy~yc~  163 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCP  163 (657)
T ss_pred             hhhhhhhhhcccCccEEEEcc
Confidence            544445667777777777777

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.62  E-value=5.9  Score=41.47  Aligned_cols=32  Identities=19%  Similarity=0.358  Sum_probs=26.8

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCC
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT  139 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~  139 (456)
                      ......++|+|...++|.+...|.|+++-...
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEecccc
Confidence            34566789999999999999999999997543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.43  E-value=3.1  Score=34.09  Aligned_cols=56  Identities=18%  Similarity=0.269  Sum_probs=39.2

Q ss_pred             CeEEEEECCCcEEEEeCCC--CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC------eEEEE
Q 012799          121 RQLASGSGDTTVRLWDLNT--QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG------ELQCW  177 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg------~i~vw  177 (456)
                      +.|+.+...+.|.+|++..  .+.+.++. .-+.|..+.++..|++|+|--.+.      .+|+|
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence            3444445667899999883  34455555 448899999999999999964332      56665

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.32  E-value=8.5  Score=38.10  Aligned_cols=145  Identities=10%  Similarity=0.082  Sum_probs=85.4

Q ss_pred             CCeEEEEECCCcEEEEeCCCCccee------EEe----------------cCCCCEEEEEEcC--CCCEEEEEeCCCeEE
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMF------KCT----------------GHKNWVLCIAWSA--DGKHLVSGSKAGELQ  175 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~------~~~----------------~~~~~v~~~~~~~--~~~~l~s~~~dg~i~  175 (456)
                      +++++.+. .+.|.||+.+.-....      .+.                .....|+.|....  +...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            66777765 6689999876422111      110                0122355554443  556889999999999


Q ss_pred             EEeCCC-------C----C-------CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC--eE-EE
Q 012799          176 CWDPQT-------G----K-------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KC-VI  234 (456)
Q Consensus       176 vwd~~~-------~----~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~-~~  234 (456)
                      +|..++       .    +       ............+++++++..   ...+++|+++....|.||-....  +. ..
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~---~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~  204 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDY---KKSRLIAVSSNSQEVTVFAFALVDERFYHV  204 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEec---CcceEEEEecCCceEEEEEEeccccccccc
Confidence            996531       0    0       000111223446788888721   15577888888788888765432  11 11


Q ss_pred             EecCcCccEEEEEeCCC-----C--eEEEEeCCCcEEEEEC
Q 012799          235 CLSGHTLAVTCVKWGGD-----G--VIYTGSQDCTIKVWET  268 (456)
Q Consensus       235 ~~~~~~~~v~~~~~~~~-----~--~l~~~~~dg~i~iwd~  268 (456)
                      .-..+...|.+++|.++     |  .+++++-.|.+.+|++
T Consensus       205 ~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  205 PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            11125566888888653     3  5777888999998877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.09  E-value=2.8  Score=38.65  Aligned_cols=88  Identities=16%  Similarity=0.175  Sum_probs=57.9

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCC---------------CC
Q 012799          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAP---------------CR  211 (456)
Q Consensus       147 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------~~  211 (456)
                      ......+.++..+|++++.|+...=|.|.++|+.++..+. ..++..+.  .+.|.......+               ..
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvr-mWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l  380 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVR-MWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFAL  380 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhh-hhccCccc--eEEEEEeecccccccccccccCCCCcceE
Confidence            3455678999999999988888778999999999887665 45554432  122221110000               11


Q ss_pred             -EEEEEeCCCcEEEEECCCCeEEEEec
Q 012799          212 -RFVSASKDGDARIWDVSLRKCVICLS  237 (456)
Q Consensus       212 -~l~~~~~dg~i~iwd~~~~~~~~~~~  237 (456)
                       +++.+-.-|.|-||+++.+..+..+.
T Consensus       381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  381 FLVIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EEEEEeccCCeEEEEecCCCCEEEEEE
Confidence             23345668899999998877666553

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.04  E-value=9.8  Score=35.01  Aligned_cols=152  Identities=17%  Similarity=0.143  Sum_probs=86.4

Q ss_pred             CCCCeEEEEECCCcEEEEeCCCCcceeEEecC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccc
Q 012799          118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH--KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKW  195 (456)
Q Consensus       118 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  195 (456)
                      -+++ +..+..+|.|.-.|.+++..+.....-  ...+..-.+..+|+ ++.++.+|.+..+|.++|+........ . .
T Consensus        67 ~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~-~-~  142 (370)
T COG1520          67 GDGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVG-G-S  142 (370)
T ss_pred             eCCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecC-C-C
Confidence            3554 444577888888888888766433211  12222223333665 778888998999998888765422221 1 1


Q ss_pred             eEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC---ccEEEEEeCCCCeEEEEeC--CCcEEEEECCC
Q 012799          196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT---LAVTCVKWGGDGVIYTGSQ--DCTIKVWETTQ  270 (456)
Q Consensus       196 v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~l~~~~~--dg~i~iwd~~~  270 (456)
                         ..+...... ....+..++.++.+...|..+++.........   ..+..-....++.++.+..  ++.+.-.|..+
T Consensus       143 ---~~~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~  218 (370)
T COG1520         143 ---PYYASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAED  218 (370)
T ss_pred             ---eEEecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccC
Confidence               222111111 22344444477999999988888766643221   1111111123446666666  66788888888


Q ss_pred             CeEEEEe
Q 012799          271 GKLIREL  277 (456)
Q Consensus       271 ~~~~~~~  277 (456)
                      |......
T Consensus       219 G~~~w~~  225 (370)
T COG1520         219 GTLKWSQ  225 (370)
T ss_pred             CcEeeee
Confidence            8777664

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.95  E-value=0.024  Score=51.35  Aligned_cols=125  Identities=16%  Similarity=0.223  Sum_probs=80.6

Q ss_pred             EEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799          245 CVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (456)
Q Consensus       245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (456)
                      ...|.+++ .++.++.+..+..||-. ++...... .......++|..++                              
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkeg------------------------------   86 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEG------------------------------   86 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhcccc------------------------------
Confidence            34566666 78888888889999854 33333222 11222233333321                              


Q ss_pred             ccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc-ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccc
Q 012799          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV  402 (456)
Q Consensus       324 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  402 (456)
                           +..++.+-..+.+++||+.+.........+ |....  +.|++.+..++.|...|.+.|++..+.+.+-..-.|.
T Consensus        87 -----dvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~  159 (615)
T KOG2247|consen   87 -----DVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQ  159 (615)
T ss_pred             -----chhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccc
Confidence                 223566777889999997665432222222 22222  7899999999999999999999988777666655588


Q ss_pred             ccEEEE
Q 012799          403 GPVYQI  408 (456)
Q Consensus       403 ~~v~~i  408 (456)
                      ..+.++
T Consensus       160 RRgtq~  165 (615)
T KOG2247|consen  160 RRGTQI  165 (615)
T ss_pred             cceeEE
Confidence            889988

>PRK13684 Ycf48-like protein; Provisional

Probab=91.89  E-value=9.4  Score=34.49  Aligned_cols=150  Identities=11%  Similarity=0.066  Sum_probs=78.3

Q ss_pred             ccceEEEEecccccCCCCCEEEEEeCCCcEEE-EECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCC
Q 012799          193 KKWITGISWEPVHLNAPCRRFVSASKDGDARI-WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG  271 (456)
Q Consensus       193 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~  271 (456)
                      ...+.++.+.|     ++.++ ..+..|.+.. +|-....-..........++++.+.+++.++..+..|.+++=....+
T Consensus       172 ~g~~~~i~~~~-----~g~~v-~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G  245 (334)
T PRK13684        172 AGVVRNLRRSP-----DGKYV-AVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDL  245 (334)
T ss_pred             cceEEEEEECC-----CCeEE-EEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCC
Confidence            45677888777     65554 4444565543 22221111222233456788999999885555667787653233444


Q ss_pred             eEEEEeecC----CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecC
Q 012799          272 KLIRELKGH----GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (456)
Q Consensus       272 ~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  347 (456)
                      ..-.....+    ...+..+.+.++                                    +. ++.++.+|.+..=. .
T Consensus       246 ~sW~~~~~~~~~~~~~l~~v~~~~~------------------------------------~~-~~~~G~~G~v~~S~-d  287 (334)
T PRK13684        246 ESWSKPIIPEITNGYGYLDLAYRTP------------------------------------GE-IWAGGGNGTLLVSK-D  287 (334)
T ss_pred             CccccccCCccccccceeeEEEcCC------------------------------------CC-EEEEcCCCeEEEeC-C
Confidence            332222111    123555666554                                    22 45555667655422 2


Q ss_pred             CCCCCcccc---ccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799          348 VSKQPKTRM---TGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (456)
Q Consensus       348 ~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  388 (456)
                      .+.. ....   ..-......+.|..+++.+++ +..|.|.-|+
T Consensus       288 ~G~t-W~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~  329 (334)
T PRK13684        288 GGKT-WEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV  329 (334)
T ss_pred             CCCC-CeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence            2222 1111   122235777887766666555 4678887775

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.88  E-value=1.8  Score=36.25  Aligned_cols=67  Identities=9%  Similarity=0.180  Sum_probs=49.9

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCccc------cc-------cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799          329 PERLVSGSDDFTMFLWEPAVSKQPKTR------MT-------GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~-------~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  395 (456)
                      +.++++-+.+|.+++||+.+.+.....      +.       .....|..+.++.+|.-|++-+ +|..+.|+..-+.-+
T Consensus        22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~W~  100 (219)
T PF07569_consen   22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGCWI  100 (219)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccceeE
Confidence            667999999999999998876533221      22       3556789999999998877765 588999997655544


Q ss_pred             E
Q 012799          396 A  396 (456)
Q Consensus       396 ~  396 (456)
                      .
T Consensus       101 ~  101 (219)
T PF07569_consen  101 R  101 (219)
T ss_pred             E
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=91.58  E-value=18  Score=36.99  Aligned_cols=83  Identities=20%  Similarity=0.119  Sum_probs=54.3

Q ss_pred             ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE---ecccccEEEEEeeeeeeecCCCCceeeecccccccceeE
Q 012799          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (456)
Q Consensus       361 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (456)
                      +.|.+++...-+.+++..-.||+|.++|-.+.+.+...   ......|.++ +.  ..|.+|     ..+   ....++|
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~-~~--~Gf~fp-----~~~---~~~~vaf  328 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSL-FQ--AGFHFP-----CIQ---PPLHVAF  328 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccc-cc--cccccc-----cCC---CCceEEE
Confidence            45777777777888999999999999999888776555   1122334443 00  011111     011   3344589


Q ss_pred             ecCCCeEEEeeCCCceE
Q 012799          438 SADSRLLLSGSKDSTLK  454 (456)
Q Consensus       438 s~dg~~l~s~s~Dg~v~  454 (456)
                      ||.+..++.-..||.+.
T Consensus       329 SPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  329 SPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             CcccceEEEEecCCCce
Confidence            99999999999888743

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.24  E-value=1.5  Score=42.87  Aligned_cols=73  Identities=15%  Similarity=0.233  Sum_probs=45.7

Q ss_pred             CCEEEEEeCCCcEEEEecCC---CCCCcc-----------cc-----------ccccccEeEEEECC----CCCEEEEEE
Q 012799          329 PERLVSGSDDFTMFLWEPAV---SKQPKT-----------RM-----------TGHQQLVNHVYFSP----DGQWVASAS  379 (456)
Q Consensus       329 ~~~l~~~~~dg~i~iwd~~~---~~~~~~-----------~~-----------~~~~~~v~~~~~sp----~~~~l~s~~  379 (456)
                      ...++.+..||.+.......   ......           .+           ......+..+++++    +..+|++.+
T Consensus       158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~  237 (547)
T PF11715_consen  158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS  237 (547)
T ss_dssp             SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred             CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence            44588888999988887553   111000           00           01123456666766    778999999


Q ss_pred             CCCcEEEEeCCCCeEEEEEecc
Q 012799          380 FDKSIKLWNGTTGKFVAVFRGH  401 (456)
Q Consensus       380 ~dg~i~iwd~~~~~~~~~~~~~  401 (456)
                      .|+++|+||+.+++++......
T Consensus       238 ~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  238 RDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             TTSEEEEEETTTTCEEEEEETT
T ss_pred             CCCeEEEEECCCCeEEEEeccc
Confidence            9999999999999997766433

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.23  E-value=2.8  Score=39.02  Aligned_cols=88  Identities=17%  Similarity=0.167  Sum_probs=47.4

Q ss_pred             cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCC
Q 012799          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS  441 (456)
Q Consensus       362 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  441 (456)
                      .|..+..++.|..++-.|.+|.+.++=.+..-.-..++.....|+|=.|.      ..+..+.. ...--+..++|+|+.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~------i~~~~fts-s~~ltl~Qa~WHP~S  177 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTP------VAERFFTS-STSLTLKQAAWHPSS  177 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeec------ccceeecc-CCceeeeeccccCCc
Confidence            47788899999999999999966555322211122233222223332111      00000000 011112223899986


Q ss_pred             ---CeEEEeeCCCceEEC
Q 012799          442 ---RLLLSGSKDSTLKVT  456 (456)
Q Consensus       442 ---~~l~s~s~Dg~v~iW  456 (456)
                         ..|..-+.|.++||.
T Consensus       178 ~~D~hL~iL~sdnviRiy  195 (741)
T KOG4460|consen  178 ILDPHLVLLTSDNVIRIY  195 (741)
T ss_pred             cCCceEEEEecCcEEEEE
Confidence               578888889999873

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.07  E-value=3.3  Score=33.19  Aligned_cols=35  Identities=11%  Similarity=0.308  Sum_probs=27.9

Q ss_pred             cceEEEEecccccCCC-CCEEEEEeCCCcEEEEECC
Q 012799          194 KWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVS  228 (456)
Q Consensus       194 ~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~  228 (456)
                      ..+.+++|+|.....+ +-.|++.+.++.|.+|...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            3789999999777665 4467778889999999755

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.18  E-value=22  Score=35.80  Aligned_cols=72  Identities=15%  Similarity=0.207  Sum_probs=49.7

Q ss_pred             cceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC----------CeE--E-EEe--------cCcCccEEEEEeCCCC
Q 012799          194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----------RKC--V-ICL--------SGHTLAVTCVKWGGDG  252 (456)
Q Consensus       194 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~--~-~~~--------~~~~~~v~~~~~~~~~  252 (456)
                      -.|..+..+|     +|.+++..|..|. .|..+..          ++.  . +++        ..+...|..+.|+|.+
T Consensus        85 f~v~~i~~n~-----~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s  158 (717)
T PF10168_consen   85 FEVHQISLNP-----TGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS  158 (717)
T ss_pred             eeEEEEEECC-----CCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence            3577788777     8999999888664 4433321          111  1 111        1345679999999853


Q ss_pred             ----eEEEEeCCCcEEEEECCCC
Q 012799          253 ----VIYTGSQDCTIKVWETTQG  271 (456)
Q Consensus       253 ----~l~~~~~dg~i~iwd~~~~  271 (456)
                          .|++-..|+++|+||+...
T Consensus       159 ~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  159 ESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCCCeEEEEecCCEEEEEecCCC
Confidence                8999999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=89.84  E-value=17  Score=33.85  Aligned_cols=112  Identities=15%  Similarity=0.143  Sum_probs=63.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCcc---ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC--e----
Q 012799          161 DGKHLVSGSKAGELQCWDPQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--K----  231 (456)
Q Consensus       161 ~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~----  231 (456)
                      +...|++|+..|.++||+...+....   .....-..+|..+..-..........||+ =.-..+.+|.+...  .    
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            34689999999999999996544221   01223456788887655322223334444 34466777776211  1    


Q ss_pred             ---EEEEecCcC--ccEEEEEeCC----C--CeEEEEeCCCcEEEEECCCCeE
Q 012799          232 ---CVICLSGHT--LAVTCVKWGG----D--GVIYTGSQDCTIKVWETTQGKL  273 (456)
Q Consensus       232 ---~~~~~~~~~--~~v~~~~~~~----~--~~l~~~~~dg~i~iwd~~~~~~  273 (456)
                         .+..+..|.  .....+++.|    .  ..+.+-+.||.+.+|+-+.-..
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f  167 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF  167 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE
Confidence               112222222  2222233322    2  2788899999999999765443

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=89.70  E-value=8.9  Score=33.43  Aligned_cols=100  Identities=15%  Similarity=0.138  Sum_probs=58.4

Q ss_pred             CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe------CCCeEEEEeCCCCCCccccc---cCcccceEEEE
Q 012799          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS------KAGELQCWDPQTGKPSGNPL---SGHKKWITGIS  200 (456)
Q Consensus       130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~---~~~~~~v~~~~  200 (456)
                      ..|++||..+.+-..--.+-.+.|+.+.|..+.++++.|.      ....+..||+.+..-....-   ..-.++|..+.
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~   95 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT   95 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence            3699999877554333334567899999986666776664      34568899988765422111   12246677776


Q ss_pred             ecccccCCCCC-EEEEEe-C--CCcEEEEECCCCeEE
Q 012799          201 WEPVHLNAPCR-RFVSAS-K--DGDARIWDVSLRKCV  233 (456)
Q Consensus       201 ~~~~~~~~~~~-~l~~~~-~--dg~i~iwd~~~~~~~  233 (456)
                      +...    ++. ..+.|. .  +..|..||-.+...+
T Consensus        96 ~~~~----d~~~~~~aG~~~~g~~~l~~~dGs~W~~i  128 (281)
T PF12768_consen   96 FISN----DGSNFWVAGRSANGSTFLMKYDGSSWSSI  128 (281)
T ss_pred             eecc----CCceEEEeceecCCCceEEEEcCCceEec
Confidence            6432    333 333333 2  234666665444433

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.61  E-value=16  Score=38.52  Aligned_cols=108  Identities=13%  Similarity=0.190  Sum_probs=59.1

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEec---ccccCCCCCEEEEEeCCCcEEEEECCCC
Q 012799          154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE---PVHLNAPCRRFVSASKDGDARIWDVSLR  230 (456)
Q Consensus       154 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~l~~~~~dg~i~iwd~~~~  230 (456)
                      ..+-+-|.=.+.. .+-|+.+.+|+.+++.... .+.+....|..+..-   |.-+.+.=++++..+.--.|.++-+.-.
T Consensus        82 ~~mGiFpeI~RaW-iTiDn~L~lWny~~~~e~~-~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~  159 (1311)
T KOG1900|consen   82 TDMGIFPEIGRAW-ITIDNNLFLWNYESDNELA-EYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD  159 (1311)
T ss_pred             eeeccchhhcceE-EEeCCeEEEEEcCCCCccc-cccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence            3444444322222 2457899999999865443 345555555555432   2222223445555555556666643211


Q ss_pred             e----E-----EEEecCcCccEEEEEeCCCCeEEEEeCCCcE
Q 012799          231 K----C-----VICLSGHTLAVTCVKWGGDGVIYTGSQDCTI  263 (456)
Q Consensus       231 ~----~-----~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i  263 (456)
                      +    .     ...+......|+|+....+|.++-++.||.|
T Consensus       160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~l  201 (1311)
T KOG1900|consen  160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNL  201 (1311)
T ss_pred             cccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCCE
Confidence            1    0     0222334567888888888877777788743

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=89.38  E-value=13  Score=32.08  Aligned_cols=151  Identities=10%  Similarity=0.009  Sum_probs=87.1

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEec--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG--HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  186 (456)
                      +-+..+.++.  ++...+..+.-++|.|+.+......+..  -.+--.++..  .|++...+..|.-+.+.|+.+.....
T Consensus        87 ~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          87 DLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence            3445566654  4566666677799999987554333221  2233445554  67888888877778888887654321


Q ss_pred             --ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE---EEEecCcCccEEEEEeCCCCeEEEEeCCC
Q 012799          187 --NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHTLAVTCVKWGGDGVIYTGSQDC  261 (456)
Q Consensus       187 --~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~l~~~~~dg  261 (456)
                        -........-..++.       .|++...+..|+-+.+.|+.....   +.... ....+.++..+++..+++.... 
T Consensus       163 lagrya~~~~d~~~v~I-------SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~e-  233 (370)
T COG5276         163 LAGRYALPGGDTHDVAI-------SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDE-  233 (370)
T ss_pred             eeeeeccCCCCceeEEE-------ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEccc-
Confidence              011111111223333       567888888999999999975432   22221 2236777777777533333333 


Q ss_pred             cEEEEECCCCe
Q 012799          262 TIKVWETTQGK  272 (456)
Q Consensus       262 ~i~iwd~~~~~  272 (456)
                      -+.+-|....+
T Consensus       234 gvlivd~s~~s  244 (370)
T COG5276         234 GVLIVDVSGPS  244 (370)
T ss_pred             ceEEEecCCCC
Confidence            36666766554

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.14  E-value=6.8  Score=40.97  Aligned_cols=154  Identities=14%  Similarity=0.277  Sum_probs=90.0

Q ss_pred             CcccEEEEEECCC-CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEc--------CCCCEEEEEeCCCeEEEE
Q 012799          107 HTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS--------ADGKHLVSGSKAGELQCW  177 (456)
Q Consensus       107 h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~l~s~~~dg~i~vw  177 (456)
                      |...=..+-+-|. ++.-+|  -|+.+.+|+.+++.....+.+-...|..+..-        |.=++++..+.--.|.++
T Consensus        77 ~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~il  154 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVIL  154 (1311)
T ss_pred             CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEE
Confidence            4444444545553 333333  57889999999988888787777777776543        222344444444456665


Q ss_pred             eCCCCCCc--ccccc------CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC----CCC---e-E---------
Q 012799          178 DPQTGKPS--GNPLS------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV----SLR---K-C---------  232 (456)
Q Consensus       178 d~~~~~~~--~~~~~------~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~----~~~---~-~---------  232 (456)
                      -+.-.+..  ...+.      .....|.++....     +|+.|++ |.||  .+|.+    ..+   + +         
T Consensus       155 gV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~-----nGRIF~~-G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~  226 (1311)
T KOG1900|consen  155 GVSFDEFTGELSIFNTSFKISVDGVSVNCITYTE-----NGRIFFA-GRDG--NLYELVYQAEDGWFGSRCRKICLTKSV  226 (1311)
T ss_pred             EEEeccccCcccccccceeeecCCceEEEEEecc-----CCcEEEe-ecCC--CEEEEEEeccCchhhcccccccCchhH
Confidence            43322110  00111      2244567777544     6665555 4555  44443    110   0 0         


Q ss_pred             -------EEEec-CcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCC
Q 012799          233 -------VICLS-GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ  270 (456)
Q Consensus       233 -------~~~~~-~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~  270 (456)
                             +..+. .+..+|..++.+... .+++-+..|+|.+||+..
T Consensus       227 ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  227 LSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             HHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence                   11223 457799999999876 888999999999999976

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=88.89  E-value=14  Score=31.64  Aligned_cols=230  Identities=14%  Similarity=0.101  Sum_probs=135.6

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  189 (456)
                      .-..++-.|||..-+++...+.|--.|-.+++....--+.......|..-|||..-++-+.. .|.-.|-++.+.....+
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l  141 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL  141 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence            44668889999988888888888888888888766655666667788888988866654433 56666666655433222


Q ss_pred             --cCcccceEEEEecccccCCCCCEEEEEeC---------CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE
Q 012799          190 --SGHKKWITGISWEPVHLNAPCRRFVSASK---------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (456)
Q Consensus       190 --~~~~~~v~~~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~  257 (456)
                        ..-........|.+     .|..-+++..         .+.|++|+...          ...-..|+..|+| .-++.
T Consensus       142 p~~~a~~nlet~vfD~-----~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwyas  206 (353)
T COG4257         142 PLEHADANLETAVFDP-----WGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYAS  206 (353)
T ss_pred             ccccCCCcccceeeCC-----CccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEEe
Confidence              12234456667776     7777777653         12344444332          2334567788888 44444


Q ss_pred             eCCCcEEEEECCCCeEEEEeecC---CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          258 SQDCTIKVWETTQGKLIRELKGH---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      -.+..|-..|..++.. ..+...   ......+..++.                                    +..-++
T Consensus       207 lagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpi------------------------------------g~~wit  249 (353)
T COG4257         207 LAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPI------------------------------------GRAWIT  249 (353)
T ss_pred             ccccceEEcccccCCc-ceecCCCcccccccccccCcc------------------------------------CcEEEe
Confidence            4555666666655421 111111   111122222222                                    333555


Q ss_pred             EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  392 (456)
                      ....+.+..||.....-....+.+....-.++.+...++.-.+--..|.|.-+|-++.
T Consensus       250 twg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta  307 (353)
T COG4257         250 TWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA  307 (353)
T ss_pred             ccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence            5666778888866655444555565556667777776766554445566777776553

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=88.44  E-value=13  Score=34.97  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=20.7

Q ss_pred             ccceeEecCCCeEEEeeCCCceEEC
Q 012799          432 MSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       432 ~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +..++..+..+.|++...+|.|.+|
T Consensus       192 I~~v~~d~~r~~ly~l~~~~~Iq~w  216 (422)
T PF08801_consen  192 IVQVAVDPSRRLLYTLTSDGSIQVW  216 (422)
T ss_dssp             EEEEEEETTTTEEEEEESSE-EEEE
T ss_pred             eeeEEecCCcCEEEEEeCCCcEEEE
Confidence            5555788888999999999999998

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.39  E-value=16  Score=31.84  Aligned_cols=207  Identities=17%  Similarity=0.234  Sum_probs=109.2

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCC------CC-cceeEEec-----CCCCEEEEEEcCCCC------------EE
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLN------TQ-TPMFKCTG-----HKNWVLCIAWSADGK------------HL  165 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l  165 (456)
                      .-+.|+++|.+.+.++....+...+||..      .. ..+.++..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            44689999999888887788899999986      12 22233331     234678888875333            35


Q ss_pred             EEEeCCCeEEEEeCCCCCC---cc-cccc-Ccccce-EEEEecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEE--Ee
Q 012799          166 VSGSKAGELQCWDPQTGKP---SG-NPLS-GHKKWI-TGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVI--CL  236 (456)
Q Consensus       166 ~s~~~dg~i~vwd~~~~~~---~~-~~~~-~~~~~v-~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~--~~  236 (456)
                      +.+++||+|.-|...-+..   .. .... .....| ..+++....   .+.+|..+ -..++|.++|-.=.+...  .+
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~---~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F  180 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTG---GGDYLYAANFRQGRIDVFKGSFRPPPLPGSF  180 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecC---CCceEEEeccCCCceEEecCccccccCCCCc
Confidence            7788999999998643332   11 0111 111222 233433211   23444443 346788888743221110  00


Q ss_pred             c-----Cc-----------CccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeec--CCcceEEEEecCcceeee
Q 012799          237 S-----GH-----------TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG--HGHWVNSLALSTEYALRT  297 (456)
Q Consensus       237 ~-----~~-----------~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~  297 (456)
                      .     ..           .-.|+-..-.+++ .=+.+..-|.|-+||+. |+.++.+..  .-..-..++..|..    
T Consensus       181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~----  255 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES----  255 (336)
T ss_pred             cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh----
Confidence            0     00           0011111112221 22234445788889875 566666632  22223445554431    


Q ss_pred             ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC
Q 012799          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK  350 (456)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  350 (456)
                                                .-...+..|+---.||+|..||..++.
T Consensus       256 --------------------------FG~~sg~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       256 --------------------------FGSLSGALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             --------------------------hCCCCCCeEEeecCCceeEEecCCCCc
Confidence                                      011235567777789999999976554

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=88.36  E-value=14  Score=33.41  Aligned_cols=102  Identities=18%  Similarity=0.274  Sum_probs=54.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC---c---cccccCcccceEEEEecccccCCCCCEEEEEeCC------
Q 012799          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP---S---GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD------  219 (456)
Q Consensus       152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~---~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------  219 (456)
                      ..+.|+|.|||+.+++ ...|.|++++ ..+..   +   .............++++|.- ..++...++.+..      
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f-~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDF-ASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTC-CCC-EEEEEEEEE-TSSSS
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceecccc-CCCCEEEEEEEcccCCCCC
Confidence            4678999999877664 6699999999 33332   1   11233445678899999832 2234444444421      


Q ss_pred             --CcEEEEECCCC-------eEE-EEecC---cCccEEEEEeCCCCeEEE
Q 012799          220 --GDARIWDVSLR-------KCV-ICLSG---HTLAVTCVKWGGDGVIYT  256 (456)
Q Consensus       220 --g~i~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~l~~  256 (456)
                        ..|.-|.....       +.+ ..+..   ....-..|.|.|+|.|+.
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYv  129 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYV  129 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEE
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEE
Confidence              23444443322       111 11122   234456799999994443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.12  E-value=3.4  Score=38.51  Aligned_cols=76  Identities=11%  Similarity=0.091  Sum_probs=49.2

Q ss_pred             ceEEEEecccccCCCCCEEEEEeCCCcEEEEEC---------CCCeEEEEe-----------cCcCccEEEEEeCCCC--
Q 012799          195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDV---------SLRKCVICL-----------SGHTLAVTCVKWGGDG--  252 (456)
Q Consensus       195 ~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~---------~~~~~~~~~-----------~~~~~~v~~~~~~~~~--  252 (456)
                      .|..+..++     .|..++-+|.+|.+.++=.         +.++.....           ....-.+..++|+|+.  
T Consensus       105 eV~~vl~s~-----~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~  179 (741)
T KOG4460|consen  105 EVYQVLLSP-----TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSIL  179 (741)
T ss_pred             EEEEEEecC-----CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccC
Confidence            344555555     8899999999987655431         223221111           1122346678899965  


Q ss_pred             --eEEEEeCCCcEEEEECCCCeEEE
Q 012799          253 --VIYTGSQDCTIKVWETTQGKLIR  275 (456)
Q Consensus       253 --~l~~~~~dg~i~iwd~~~~~~~~  275 (456)
                        .++.-+.|..+++||+...+.+.
T Consensus       180 D~hL~iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  180 DPHLVLLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             CceEEEEecCcEEEEEecCCcchhh
Confidence              78888999999999998765543

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.02  E-value=2.8  Score=38.29  Aligned_cols=164  Identities=15%  Similarity=0.177  Sum_probs=95.5

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee-EE-ecCCC----CEE-EEEEcCCCCEEEEEeCCCe
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-KC-TGHKN----WVL-CIAWSADGKHLVSGSKAGE  173 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~-~~-~~~~~----~v~-~~~~~~~~~~l~s~~~dg~  173 (456)
                      ++.|..-...|..+-..|||+.|..-+. ..+.++++.+..... .+ ....+    .|+ .+..-..|..++.++.||.
T Consensus       213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~  291 (733)
T COG4590         213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL  291 (733)
T ss_pred             hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence            3445666778888999999998877655 578899887543211 11 11111    122 1222235667888899999


Q ss_pred             EEEE-eCCCCCCccccccCcccceEEEEeccc-----ccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEE
Q 012799          174 LQCW-DPQTGKPSGNPLSGHKKWITGISWEPV-----HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK  247 (456)
Q Consensus       174 i~vw-d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  247 (456)
                      |.-| |.+.+...      |-..+....+.|.     ....+.+-|++-+..|++.++.....+.+..-. --..+.-++
T Consensus       292 vsQWFdvr~~~~p------~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~  364 (733)
T COG4590         292 VSQWFDVRRDGQP------HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVA  364 (733)
T ss_pred             eeeeeeeecCCCC------cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceee
Confidence            8877 55443221      1111222222211     011144567777888888888765544433222 223566788


Q ss_pred             eCCCC-eEEEEeCCCcEEEEECCCCeE
Q 012799          248 WGGDG-VIYTGSQDCTIKVWETTQGKL  273 (456)
Q Consensus       248 ~~~~~-~l~~~~~dg~i~iwd~~~~~~  273 (456)
                      ++|.+ +++ ....|.++++.+++..+
T Consensus       365 ~Sp~~~~Ll-~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         365 MSPNQAYLL-SEDQGKIRLAQLENRNP  390 (733)
T ss_pred             eCcccchhe-eecCCceEEEEecCCCC
Confidence            99988 444 45667899998877544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.02  E-value=3.3  Score=23.50  Aligned_cols=31  Identities=29%  Similarity=0.374  Sum_probs=23.3

Q ss_pred             CCCCeEEEEE-CCCcEEEEeCCCCcceeEEec
Q 012799          118 PDGRQLASGS-GDTTVRLWDLNTQTPMFKCTG  148 (456)
Q Consensus       118 ~~~~~l~~~~-~d~~v~vwd~~~~~~~~~~~~  148 (456)
                      |++++|+++. .+++|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5677666654 578999999988887777664

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=87.98  E-value=36  Score=35.21  Aligned_cols=103  Identities=10%  Similarity=0.047  Sum_probs=58.7

Q ss_pred             CCCcEEEEecCCCCCCcccccc--ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec--ccccEEEEEeee
Q 012799          337 DDFTMFLWEPAVSKQPKTRMTG--HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG--HVGPVYQIRFEL  412 (456)
Q Consensus       337 ~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~  412 (456)
                      .+|.++.|++...+.....+..  -.++|  .+..|...++.+| ....+++||+...++++..+.  -...|..+.+  
T Consensus       910 ~~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--  984 (1205)
T KOG1898|consen  910 SSGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--  984 (1205)
T ss_pred             CCCceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--
Confidence            4566788876555543332221  12233  4566765565554 456899999988776654332  2334555422  


Q ss_pred             eeeecCCCCceeeecccccccceeEecCCCeEEEeeCC
Q 012799          413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD  450 (456)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D  450 (456)
                            -.....+.+...++..+.|.++++.|+.-..|
T Consensus       985 ------~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen  985 ------YGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred             ------cceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence                  23344455556666666788877766665554

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.55  E-value=6.6  Score=31.46  Aligned_cols=30  Identities=10%  Similarity=0.312  Sum_probs=25.2

Q ss_pred             ccEEEEEeCCCC-------eEEEEeCCCcEEEEECCC
Q 012799          241 LAVTCVKWGGDG-------VIYTGSQDCTIKVWETTQ  270 (456)
Q Consensus       241 ~~v~~~~~~~~~-------~l~~~~~dg~i~iwd~~~  270 (456)
                      ..+..++|+|.|       .|++.+.+|.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999954       688899999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.44  E-value=3  Score=23.37  Aligned_cols=30  Identities=23%  Similarity=0.308  Sum_probs=20.2

Q ss_pred             CCcccEEEEEECCCCCeEEEEE-CC--CcEEEE
Q 012799          106 GHTEAVLSVAFSPDGRQLASGS-GD--TTVRLW  135 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~-~d--~~v~vw  135 (456)
                      ...+.-....|+|||+.|+.++ .+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3456778899999999888665 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=85.73  E-value=4.1  Score=22.76  Aligned_cols=32  Identities=28%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             EecCCCCEEEEEEcCCCCEEEEEeC-C--CeEEEE
Q 012799          146 CTGHKNWVLCIAWSADGKHLVSGSK-A--GELQCW  177 (456)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~l~s~~~-d--g~i~vw  177 (456)
                      +......-....|+|||+.|+-++. +  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3345567788999999998886554 4  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=85.54  E-value=28  Score=31.62  Aligned_cols=15  Identities=33%  Similarity=0.417  Sum_probs=10.6

Q ss_pred             EecCCCeEEEeeCCC
Q 012799          437 WSADSRLLLSGSKDS  451 (456)
Q Consensus       437 ~s~dg~~l~s~s~Dg  451 (456)
                      ..-++++++.||.+.
T Consensus       318 ~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       318 VSWNNGVLLIGGENS  332 (346)
T ss_pred             EEcCCEEEEEeccCC
Confidence            345778888888753

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=85.21  E-value=5  Score=22.73  Aligned_cols=31  Identities=19%  Similarity=0.287  Sum_probs=24.0

Q ss_pred             CCCCEEEEEE-CCCcEEEEeCCCCeEEEEEec
Q 012799          370 PDGQWVASAS-FDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       370 p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~  400 (456)
                      |++++|+++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5677666554 578999999999988887765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=84.79  E-value=20  Score=29.33  Aligned_cols=70  Identities=9%  Similarity=-0.037  Sum_probs=38.5

Q ss_pred             CCCEEEEEeCC--CcEEEEECCCCeEEEEecCcCccEE--EEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEee
Q 012799          209 PCRRFVSASKD--GDARIWDVSLRKCVICLSGHTLAVT--CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK  278 (456)
Q Consensus       209 ~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  278 (456)
                      ++.++.+.+.-  ..|++||+.+++.+...+-....+.  .+.-..+....-.-.+|.-..+|.++-+.+..+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~  128 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS  128 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc
Confidence            44555555543  4799999999987765532211111  1111122222333456777788887766665554

>smart00564 PQQ beta-propeller repeat

Probab=84.67  E-value=3  Score=22.18  Aligned_cols=27  Identities=30%  Similarity=0.635  Sum_probs=22.4

Q ss_pred             CCeEEEEeCCCcEEEEECCCCeEEEEe
Q 012799          251 DGVIYTGSQDCTIKVWETTQGKLIREL  277 (456)
Q Consensus       251 ~~~l~~~~~dg~i~iwd~~~~~~~~~~  277 (456)
                      ++.+++++.+|.+..+|.++|+.+..+
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            457888999999999999998876543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>smart00564 PQQ beta-propeller repeat

Probab=84.53  E-value=2.6  Score=22.39  Aligned_cols=25  Identities=20%  Similarity=0.248  Sum_probs=21.1

Q ss_pred             EEEEEECCCcEEEEeCCCCeEEEEE
Q 012799          374 WVASASFDKSIKLWNGTTGKFVAVF  398 (456)
Q Consensus       374 ~l~s~~~dg~i~iwd~~~~~~~~~~  398 (456)
                      .++.++.+|.+..+|..+|+.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5778889999999999999887653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=84.48  E-value=7.3  Score=38.13  Aligned_cols=72  Identities=17%  Similarity=0.226  Sum_probs=43.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCC----CeEEEE-e-cC--------------------cCccEEEEEeCC-----CCeEEEE
Q 012799          209 PCRRFVSASKDGDARIWDVSL----RKCVIC-L-SG--------------------HTLAVTCVKWGG-----DGVIYTG  257 (456)
Q Consensus       209 ~~~~l~~~~~dg~i~iwd~~~----~~~~~~-~-~~--------------------~~~~v~~~~~~~-----~~~l~~~  257 (456)
                      +...++.+..||.+.......    +..... . ..                    .......++++.     +..+++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            456788888888888777653    111111 1 00                    112344455544     3389999


Q ss_pred             eCCCcEEEEECCCCeEEEEeecC
Q 012799          258 SQDCTIKVWETTQGKLIRELKGH  280 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~~~~~~~~  280 (456)
                      +.|+.+|+||+.+++++......
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEEETT
T ss_pred             eCCCeEEEEECCCCeEEEEeccc
Confidence            99999999999999998776543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=84.40  E-value=29  Score=30.83  Aligned_cols=60  Identities=18%  Similarity=0.138  Sum_probs=40.5

Q ss_pred             CCCeEEEEECCCcEEEEeCCCC-cceeEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCC
Q 012799          119 DGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQ  180 (456)
Q Consensus       119 ~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~  180 (456)
                      ++++|+.|+.+| +.+.+.... .....+ .+...|+++...+.-+.|++- +....++++++.
T Consensus        12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl-~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~   73 (302)
T smart00036       12 DGKWLLVGTEEG-LYVLNISDQPGTLEKL-IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS   73 (302)
T ss_pred             CCcEEEEEeCCc-eEEEEcccCCCCeEEe-cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence            346899999998 555566542 222222 356789999999877766654 444559999984

Unpublished observations.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.27  E-value=28  Score=30.47  Aligned_cols=113  Identities=17%  Similarity=0.270  Sum_probs=67.3

Q ss_pred             CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEe------CCCcEEEEECCCCeEEEEecC-----cC
Q 012799          172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLSG-----HT  240 (456)
Q Consensus       172 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~-----~~  240 (456)
                      ..|++||..+.+-.. .-.+-.+.|.++.|..     +.+.++.|.      ....+..||..+..-. .+..     -.
T Consensus        16 ~~lC~yd~~~~qW~~-~g~~i~G~V~~l~~~~-----~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ip   88 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSS-PGNGISGTVTDLQWAS-----NNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIP   88 (281)
T ss_pred             CEEEEEECCCCEeec-CCCCceEEEEEEEEec-----CCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCC
Confidence            359999988766543 3445678899999974     445555553      3557888998776532 2222     24


Q ss_pred             ccEEEEEeCCC-C--eEEEEe-CCC--cEEEEECCCCeEEEE-eecCCcceEEEEecC
Q 012799          241 LAVTCVKWGGD-G--VIYTGS-QDC--TIKVWETTQGKLIRE-LKGHGHWVNSLALST  291 (456)
Q Consensus       241 ~~v~~~~~~~~-~--~l~~~~-~dg--~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~  291 (456)
                      ++|+.+.+... +  ..++|. .+|  .|..||=.+...+.. .......|..+.+-+
T Consensus        89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             CcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence            77888877432 2  343433 233  467777555544444 333345666665544

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.03  E-value=55  Score=33.70  Aligned_cols=69  Identities=13%  Similarity=0.073  Sum_probs=43.0

Q ss_pred             EECCCCCeEEEEECCCcEEEEeCCCCccee---E------E--ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 012799          115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMF---K------C--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (456)
Q Consensus       115 ~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~---~------~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  183 (456)
                      ++..-|+.+..|+.+|.+.+|.+.+.....   .      +  .-+..+|..+...+.-.++++ -.|+.|.++++.+-+
T Consensus        21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~~   99 (877)
T KOG2063|consen   21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPELE   99 (877)
T ss_pred             HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCccc
Confidence            344457889999999999999986542110   0      0  113466666666654444444 346678888776655


Q ss_pred             C
Q 012799          184 P  184 (456)
Q Consensus       184 ~  184 (456)
                      .
T Consensus       100 ~  100 (877)
T KOG2063|consen  100 P  100 (877)
T ss_pred             c
Confidence            4

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=82.94  E-value=52  Score=32.58  Aligned_cols=153  Identities=10%  Similarity=0.059  Sum_probs=0.0

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeC---------CCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC-CCe---E
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDL---------NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGE---L  174 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~---i  174 (456)
                      .+.|.++.|.++++.+++.-.+|.|.+||.         ........-..+..-|.....-....++++.+. ++.   .
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE


Q ss_pred             EEEeCCCCCCcccccc---CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc-------CccEE
Q 012799          175 QCWDPQTGKPSGNPLS---GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-------TLAVT  244 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~  244 (456)
                      +++.+.........+.   .+........|.-     ....+..- .++.|.+|++..-+...++.-.       ...|.
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y-----~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vS  282 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCY-----QFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVS  282 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEE-----eCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceE


Q ss_pred             EEEeCCCCeEEEEeCCCcEEEEEC
Q 012799          245 CVKWGGDGVIYTGSQDCTIKVWET  268 (456)
Q Consensus       245 ~~~~~~~~~l~~~~~dg~i~iwd~  268 (456)
                      -.+.+++..|++...  .|++.|+
T Consensus       283 l~~~s~nRvLLs~~n--kIyLld~  304 (670)
T PF10395_consen  283 LKPPSPNRVLLSVNN--KIYLLDL  304 (670)
T ss_pred             eecCCCCeEEEEcCC--EEEEEee

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=82.90  E-value=38  Score=31.01  Aligned_cols=166  Identities=14%  Similarity=0.145  Sum_probs=88.9

Q ss_pred             CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC----CCCE--EEEEe-CC---CeEEEEeCCC--CCCcc
Q 012799          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA----DGKH--LVSGS-KA---GELQCWDPQT--GKPSG  186 (456)
Q Consensus       119 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--l~s~~-~d---g~i~vwd~~~--~~~~~  186 (456)
                      ...+++....++-+.+||++ |+.+..+.  .+.++.+....    +|+.  |+.++ ++   ..|++|.+..  +....
T Consensus        67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~  143 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD  143 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred             ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence            44577777788899999997 55566554  23444443321    3332  34443 32   4699997753  32211


Q ss_pred             c-----cccCcccceEEEEecccccCCCCC-EEEEEeCCCcEEEEECC---CC----eEEEEecCcCccEEEEEeCCCC-
Q 012799          187 N-----PLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVS---LR----KCVICLSGHTLAVTCVKWGGDG-  252 (456)
Q Consensus       187 ~-----~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~v~~~~~~~~~-  252 (456)
                      .     .+......++.+|.-...  .+|. +.+..+.+|.+..|.+.   .+    +.++.+.. ...+..+..+... 
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~--~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g  220 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSP--STGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETG  220 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-T--TT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTT
T ss_pred             cCCCCcccccccccceeeEEeecC--CCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccC
Confidence            0     011112346777764311  1333 56667888988888764   22    45666654 3467777777655 


Q ss_pred             eEEEEeCCCcEEEEECCC-----CeEEEEeec--CCcceEEEEec
Q 012799          253 VIYTGSQDCTIKVWETTQ-----GKLIRELKG--HGHWVNSLALS  290 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~~-----~~~~~~~~~--~~~~i~~~~~~  290 (456)
                      .|+.+-.+.-|.-|+.+-     ++.+....+  ....+..+++-
T Consensus       221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly  265 (381)
T PF02333_consen  221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALY  265 (381)
T ss_dssp             EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEE
T ss_pred             CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEE
Confidence            999999998888888762     222222222  23456666664

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=82.59  E-value=36  Score=30.56  Aligned_cols=105  Identities=11%  Similarity=0.090  Sum_probs=51.4

Q ss_pred             CCCeEEEEECC-----CcEEEEeCCCCcce---eEEecCCCCE--EEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCC
Q 012799          119 DGRQLASGSGD-----TTVRLWDLNTQTPM---FKCTGHKNWV--LCIAWSADGKHLVSGSKA-----GELQCWDPQTGK  183 (456)
Q Consensus       119 ~~~~l~~~~~d-----~~v~vwd~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~  183 (456)
                      ++.+++.|+.+     ..+..+|+.+.+-.   ..+..-..+.  .+++. -+++..+.|+..     ..+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            55667777654     25666777655421   1111111111  12222 256666777642     358888887765


Q ss_pred             Ccccc-ccCc-ccceEEEEecccccCCCCCEEEEEeCCC----cEEEEECCCCe
Q 012799          184 PSGNP-LSGH-KKWITGISWEPVHLNAPCRRFVSASKDG----DARIWDVSLRK  231 (456)
Q Consensus       184 ~~~~~-~~~~-~~~v~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~  231 (456)
                      -.... +... ......+..       ++..++.|+.++    .+..||..+.+
T Consensus       151 W~~~~~~p~~~r~~~~~~~~-------~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKL-------QNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCCCCCCcceEEEE-------CCEEEEEcCCCCccccceEEEecCCCe
Confidence            32211 1111 111111111       556778887654    35678887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=82.45  E-value=74  Score=34.06  Aligned_cols=86  Identities=14%  Similarity=0.161  Sum_probs=42.8

Q ss_pred             eEEEECCCCCEEEEEECCC---cEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecC
Q 012799          364 NHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD  440 (456)
Q Consensus       364 ~~~~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  440 (456)
                      .+++++++|.+.++-+...   .|+..  .+...+..+.|-..++.|..-....|+..... +.....-..+.+++.+||
T Consensus       596 r~Iavg~~G~lyvaEsD~rriNrvr~~--~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~-~At~A~lnsp~alaVsPd  672 (1899)
T KOG4659|consen  596 RDIAVGTDGALYVAESDGRRINRVRKL--STDGTISILAGAKSPCSCDVAACCDCFSLRDV-AATQAKLNSPYALAVSPD  672 (1899)
T ss_pred             hceeecCCceEEEEeccchhhhheEEe--ccCceEEEecCCCCCCCcccccCCccccccch-hhhccccCCcceEEECCC
Confidence            6788888887655544332   23333  33335666666555554431111111111110 011112334666799999


Q ss_pred             CCeEEEeeCCCc
Q 012799          441 SRLLLSGSKDST  452 (456)
Q Consensus       441 g~~l~s~s~Dg~  452 (456)
                      |...++-..+-.
T Consensus       673 g~v~IAD~gN~r  684 (1899)
T KOG4659|consen  673 GDVIIADSGNSR  684 (1899)
T ss_pred             CcEEEecCCchh
Confidence            988776554433

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=82.20  E-value=33  Score=29.83  Aligned_cols=134  Identities=14%  Similarity=0.025  Sum_probs=81.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc-cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC
Q 012799          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  227 (456)
                      -.+-+..+.++  +++...+..+.-+++.|+.+.......- ....+--.++..       .|++...+..|.-..+.|+
T Consensus        85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-------sGn~aYVadlddgfLivdv  155 (370)
T COG5276          85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-------SGNYAYVADLDDGFLIVDV  155 (370)
T ss_pred             hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-------cCCEEEEeeccCcEEEEEC
Confidence            44556667775  4477777777789999998765432111 111122222222       6788888887777888888


Q ss_pred             CCCe---EEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeE---EEEeecCCcceEEEEecCcc
Q 012799          228 SLRK---CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL---IRELKGHGHWVNSLALSTEY  293 (456)
Q Consensus       228 ~~~~---~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~  293 (456)
                      .+.+   ..-........-..++.+.+ +-+.+..|+-+.+.|+.....   +.... ....+.++..+++.
T Consensus       156 sdpssP~lagrya~~~~d~~~v~ISGn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr  225 (370)
T COG5276         156 SDPSSPQLAGRYALPGGDTHDVAISGN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNR  225 (370)
T ss_pred             CCCCCceeeeeeccCCCCceeEEEecC-eEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCe
Confidence            6543   33344444455566777755 666777888899999876532   22222 23356777777664

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=82.01  E-value=49  Score=31.71  Aligned_cols=156  Identities=17%  Similarity=0.129  Sum_probs=0.0

Q ss_pred             CCCCeEEEE---ECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcc-
Q 012799          118 PDGRQLASG---SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK-  193 (456)
Q Consensus       118 ~~~~~l~~~---~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-  193 (456)
                      .++-++++.   ...+...+.|.+ |.....+.........+...++|.+++..+  +.+..+|+.........+.... 
T Consensus       113 ~~gl~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~  189 (477)
T PF05935_consen  113 EDGLYFVNGNDWDSSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYY  189 (477)
T ss_dssp             TT-EEEEEETT--BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE
T ss_pred             CCcEEEEeCCCCCCCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCccc


Q ss_pred             cceEEEEecccccCCCCCEEEEEe--------------CCCcEEEEECCCCeEEEEecCcCcc-----------------
Q 012799          194 KWITGISWEPVHLNAPCRRFVSAS--------------KDGDARIWDVSLRKCVICLSGHTLA-----------------  242 (456)
Q Consensus       194 ~~v~~~~~~~~~~~~~~~~l~~~~--------------~dg~i~iwd~~~~~~~~~~~~~~~~-----------------  242 (456)
                      ..-..+...|     +|++|+.+.              .|. |..+| .+++.+..+.....-                 
T Consensus       190 ~~HHD~~~l~-----nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~  262 (477)
T PF05935_consen  190 DFHHDIDELP-----NGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDIS  262 (477)
T ss_dssp             -B-S-EEE-T-----TS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS
T ss_pred             ccccccEECC-----CCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccc


Q ss_pred             ----------EEEEEeCC-CC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcc
Q 012799          243 ----------VTCVKWGG-DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW  283 (456)
Q Consensus       243 ----------v~~~~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  283 (456)
                                +.++.+.+ ++ .++++-.-..|...|.++++....+..+...
T Consensus       263 ~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w  315 (477)
T PF05935_consen  263 GSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGW  315 (477)
T ss_dssp             -SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT-
T ss_pred             cCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCC

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=81.82  E-value=67  Score=33.09  Aligned_cols=115  Identities=18%  Similarity=0.229  Sum_probs=74.1

Q ss_pred             ccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCc-----ceeEEecCCC----------CEEEEEEcCCCCEEEEEeCCC
Q 012799          109 EAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHKN----------WVLCIAWSADGKHLVSGSKAG  172 (456)
Q Consensus       109 ~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~~----------~v~~~~~~~~~~~l~s~~~dg  172 (456)
                      .+...++|+| +.+.||.....|...||++....     .......+.+          .-..+.|.++-+.|+.++.. 
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-
Confidence            3667899998 45689999999999999992211     1111111122          23478898888888887764 


Q ss_pred             eEEEEeCCCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC
Q 012799          173 ELQCWDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL  229 (456)
Q Consensus       173 ~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  229 (456)
                      .+.++|+++..... .........|.++.-+|..    ..+++.-+. ..|...++..
T Consensus       225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~----~~~~FiLTs-~eiiw~~~~~  277 (765)
T PF10214_consen  225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDN----PSHVFILTS-KEIIWLDVKS  277 (765)
T ss_pred             ceEEEECCCCCccchhccCCChhheeeEEecCCc----cceEEEEec-CeEEEEEccC
Confidence            68999999876533 2344455678888877732    123333333 5677777765

These proteins are found in fungi.

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=81.57  E-value=31  Score=36.21  Aligned_cols=136  Identities=14%  Similarity=0.188  Sum_probs=0.0

Q ss_pred             CeEEEEEC---------CCcEEEEeC-----CCCcceeEEe-------cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          121 RQLASGSG---------DTTVRLWDL-----NTQTPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       121 ~~l~~~~~---------d~~v~vwd~-----~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      .+||.|..         .|.+.|+|+     +.+++....+       ..++.|..++=- +|.++.+-|.  +|.+|++
T Consensus      1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G~l~~~~Gq--KI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RGHLLSSQGQ--KIIVRKL 1123 (1366)
T ss_pred             ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-ccEEEEccCc--EEEEEEe


Q ss_pred             -CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc---EEEEEeCCCC---
Q 012799          180 -QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA---VTCVKWGGDG---  252 (456)
Q Consensus       180 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~~---  252 (456)
                       +....+..-+..-.-.+.++..-.       ++++.|..-..|.+.-....-....+-.....   +.++.|--+|   
T Consensus      1124 ~r~~~ligVaFiD~~~yv~s~~~vk-------nlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L 1196 (1366)
T KOG1896|consen 1124 DRDSELIGVAFIDLPLYVHSMKVVK-------NLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNL 1196 (1366)
T ss_pred             ccCCcceeeEEeccceeEEehhhhh-------hheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCee


Q ss_pred             eEEEEeCCCcEEEE
Q 012799          253 VIYTGSQDCTIKVW  266 (456)
Q Consensus       253 ~l~~~~~dg~i~iw  266 (456)
                      .++++..++.|++|
T Consensus      1197 ~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1197 SFLVSDADRNIHVY 1210 (1366)
T ss_pred             EEEEEcCCCcEEEE

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=81.38  E-value=54  Score=31.75  Aligned_cols=111  Identities=17%  Similarity=0.138  Sum_probs=55.8

Q ss_pred             CCCCCeEEEEECCCcEEEEeCCCCcc--eeEEecC-CCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCccccccCc
Q 012799          117 SPDGRQLASGSGDTTVRLWDLNTQTP--MFKCTGH-KNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNPLSGH  192 (456)
Q Consensus       117 s~~~~~l~~~~~d~~v~vwd~~~~~~--~~~~~~~-~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  192 (456)
                      ..++..++.+..+|.+....+.....  ....-+. .....++.+..+| .+|+.|+.-|.=.++.+.............
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N  298 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN  298 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence            45677888889999998887765331  2222223 4556677776554 477778775544444433222211112233


Q ss_pred             ccceEEEEecccccCCCC-----CEEEEEe---CCCcEEEEEC
Q 012799          193 KKWITGISWEPVHLNAPC-----RRFVSAS---KDGDARIWDV  227 (456)
Q Consensus       193 ~~~v~~~~~~~~~~~~~~-----~~l~~~~---~dg~i~iwd~  227 (456)
                      -++|.+++..+.......     ..+++++   .+|.+++..-
T Consensus       299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~  341 (504)
T PF10433_consen  299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN  341 (504)
T ss_dssp             --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred             cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Confidence            467888877543211111     1455543   4678888753

...

>PLN02153 epithiospecifier protein

Probab=81.09  E-value=43  Score=30.39  Aligned_cols=23  Identities=13%  Similarity=0.270  Sum_probs=15.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCe
Q 012799          209 PCRRFVSASKD-----GDARIWDVSLRK  231 (456)
Q Consensus       209 ~~~~l~~~~~d-----g~i~iwd~~~~~  231 (456)
                      ++..++.|+.+     ..+.+||..+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~  112 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNE  112 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence            45667777753     357888887654

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=80.94  E-value=34  Score=29.14  Aligned_cols=146  Identities=14%  Similarity=0.130  Sum_probs=0.0

Q ss_pred             EEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCC-----CCCccccccCcccceEEEEecccc
Q 012799          134 LWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQT-----GKPSGNPLSGHKKWITGISWEPVH  205 (456)
Q Consensus       134 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~  205 (456)
                      +||+.+++....-........+-++-+||++|.+|+.   ...+++++...     .-...........+=.+..-.|  
T Consensus        50 ~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~--  127 (243)
T PF07250_consen   50 EYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP--  127 (243)
T ss_pred             EEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC--


Q ss_pred             cCCCCCEEEEEeCCCcEEEEECC--CCeEEEEe--------cCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEE
Q 012799          206 LNAPCRRFVSASKDGDARIWDVS--LRKCVICL--------SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIR  275 (456)
Q Consensus       206 ~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~--------~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  275 (456)
                         ||+.|+.|+.+....-+-..  .......+        .....----+...|+|.|+.-+..+.+ +||..+.+.++
T Consensus       128 ---DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~-i~d~~~n~v~~  203 (243)
T PF07250_consen  128 ---DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI-IYDYKTNTVVR  203 (243)
T ss_pred             ---CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE-EEeCCCCeEEe


Q ss_pred             EeecCCcceE
Q 012799          276 ELKGHGHWVN  285 (456)
Q Consensus       276 ~~~~~~~~i~  285 (456)
                      .+..-.+.++
T Consensus       204 ~lP~lPg~~R  213 (243)
T PF07250_consen  204 TLPDLPGGPR  213 (243)
T ss_pred             eCCCCCCCce

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF01011 PQQ: PQQ enzyme repeat family

Probab=80.49  E-value=5.3  Score=22.30  Aligned_cols=27  Identities=22%  Similarity=0.204  Sum_probs=22.9

Q ss_pred             EEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          374 WVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       374 ~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                      .++.++.||.+.-.|.++|+.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            355668999999999999999988763

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF01011 PQQ: PQQ enzyme repeat family

Probab=80.32  E-value=5.5  Score=22.22  Aligned_cols=27  Identities=19%  Similarity=0.464  Sum_probs=23.5

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEeec
Q 012799          253 VIYTGSQDCTIKVWETTQGKLIRELKG  279 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~~~~~~~~~~~  279 (456)
                      .+++++.+|.|.-.|.++|+.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            467779999999999999999988764

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	456
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-33
2h9l_A	329	Wdr5delta23 Length = 329		4e-27
2h9l_A	329	Wdr5delta23 Length = 329		3e-20
2h9l_A	329	Wdr5delta23 Length = 329		2e-12
2h9l_A	329	Wdr5delta23 Length = 329		2e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-27
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-20
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-12
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-27
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-12
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-27
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-20
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-12
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-27
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-12
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-27
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-20
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-12
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-27
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-20
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-12
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-27
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-20
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-12
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-27
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-20
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		9e-13
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-27
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-20
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-12
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-27
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-20
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-12
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		6e-27
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-20
2gnq_A	336	Structure Of Wdr5 Length = 336		9e-13
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-26
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		7e-18
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-26
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-19
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-12
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-26
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-18
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-26
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-20
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-12
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-26
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-20
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-12
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-24
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		7e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-21
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-13
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		9e-19
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-18
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-14
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-16
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-14
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-16
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-16
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-10
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-16
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-10
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-15
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-10
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-15
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-10
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-15
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-10
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-15
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-10
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-04
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		4e-15
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-10
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-15
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-14
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		6e-15
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-14
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-14
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-09
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-14
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-14
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-11
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		7e-14
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-11
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-13
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		4e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-13
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-06
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-13
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-13
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-13
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-11
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-11
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		3e-11
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-11
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		9e-11
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-10
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-10
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-07
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-09
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		4e-09
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		4e-09
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-09
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		4e-09
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		4e-09
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		6e-09
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		9e-09
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-08
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		4e-08
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		4e-06
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-07
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		3e-07
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		9e-07
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		8e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-05
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		1e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		2e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		7e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-05
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		2e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		2e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-04
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		2e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		6e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		3e-04
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		5e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 189/382 (49%), Gaps = 37/382 (9%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++  NR  A    H+ +V  VAFSPDG+ +AS S D TV+LW+ N Q  +   TGH + V
Sbjct: 6   VKERNRLEA----HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSV 60
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +A+S DG+ + S S    ++ W+ + G+     L+GH   + G+++ P       +  
Sbjct: 61  WGVAFSPDGQTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVRGVAFSP-----DGQTI 113
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
            SAS D   ++W+ +  + +  L+GH+ +V  V +  DG  I + S D T+K+W    G+
Sbjct: 114 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQ 171
Query: 273 LIRELKGHGHWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA--- 328
           L++ L GH   V  +A S +   + + + D T K ++   ++ +      + ++G A   
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 231
Query: 329 -PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
             + + S SDD T+ LW    + Q    +TGH   VN V F PDGQ +ASAS DK++KLW
Sbjct: 232 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Query: 388 NGTTGKFVAVFRGHVGPVYQIRFE--------------LIYCFRYPSNFYCVVDMSCCMS 433
           N   G+ +    GH   V+ + F               +    R   +   +   S  + 
Sbjct: 290 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW 348
Query: 434 LYSWSADSRLLLSGSKDSTLKV 455
             ++S D + + S S D T+K+
Sbjct: 349 GVAFSPDGQTIASASDDKTVKL 370

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 26  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 85
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 86  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 139
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 259
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 260 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 315
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 316 LENDKTIKLW 325

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 34  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 90
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 91  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 180
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 181 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 231
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++KLW+ + GK +  + GH    Y I
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKYCI 257

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           L+GHT AV+ VK+  +G  + + S D  IK+W    GK  + + GH   ++ +A S++  
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
           L                                    LVS SDD T+ +W+ +  K  KT
Sbjct: 96  L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 119
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
            + GH   V    F+P    + S SFD+S+++W+  TGK +     H  PV  + F 
Sbjct: 120 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 175

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 33  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 88
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                  +WS+DS LL+S S D TLK+
Sbjct: 89  -----------------------AWSSDSNLLVSASDDKTLKI 108

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 5   VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 64
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 65  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 118
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 238
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 239 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 295 LENDKTIKLW 304

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 13  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 69
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 70  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 159
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 160 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 210
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++KLW+ + GK +  + GH    Y I
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKYCI 236

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           L+GHT AV+ VK+  +G  + + S D  IK+W    GK  + + GH   ++ +A S++  
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
           L                                    LVS SDD T+ +W+ +  K  KT
Sbjct: 75  L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 98
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
            + GH   V    F+P    + S SFD+S+++W+  TGK +     H  PV  + F 
Sbjct: 99  -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 12  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 67
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                  +WS+DS LL+S S D TLK+
Sbjct: 68  -----------------------AWSSDSNLLVSASDDKTLKI 87

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 15  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 75  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 249 NFSVTGG---KWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 305 LENDKTIKLW 314

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 80  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++KLW+ + GK +  + GH    Y I
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCI 246

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           L+GHT AV+ VK+  +G  + + S D  IK+W    GK  + + GH   ++ +A S++  
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
           L                                    LVS SDD T+ +W+ +  K  KT
Sbjct: 85  L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 108
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
            + GH   V    F+P    + S SFD+S+++W+  TGK +     H  PV  + F 
Sbjct: 109 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 22  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 77
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                  +WS+DS LL+S S D TLK+
Sbjct: 78  -----------------------AWSSDSNLLVSASDDKTLKI 97

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 145/316 (45%), Gaps = 26/316 (8%)
Query: 88  PQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT 147
           P     ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +
Sbjct: 2   PLGSTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 61
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
           GHK  +  +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P    
Sbjct: 62  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP---- 116
Query: 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
                 VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W
Sbjct: 117 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 267 ETTQGKLIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313
           +T  G+ ++ L               +G ++ +  L     L   +     K Y+  +  
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 235
Query: 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373
           K      ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P   
Sbjct: 236 KYCIFANFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTEN 291
Query: 374 WVASASF--DKSIKLW 387
            +ASA+   DK+IKLW
Sbjct: 292 IIASAALENDKTIKLW 307

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 16  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 72
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 73  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 162
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 163 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 213
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++KLW+ + GK +  + GH    Y I
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKYCI 239

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           L+GHT AV+ VK+  +G  + + S D  IK+W    GK  + + GH   ++ +A S++  
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
           L                                    LVS SDD T+ +W+ +  K  KT
Sbjct: 78  L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 101
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
            + GH   V    F+P    + S SFD+S+++W+  TGK +     H  PV  + F 
Sbjct: 102 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 15  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 70
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                  +WS+DS LL+S S D TLK+
Sbjct: 71  -----------------------AWSSDSNLLVSASDDKTLKI 90

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 15  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 75  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 249 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 305 LENDKTIKLW 314

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 80  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++KLW+ + GK +  + GH    Y I
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCI 246

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           L+GHT AV+ VK+  +G  + + S D  IK+W    GK  + + GH   ++ +A S++  
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
           L                                    LVS SDD T+ +W+ +  K  KT
Sbjct: 85  L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 108
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
            + GH   V    F+P    + S SFD+S+++W+  TGK +     H  PV  + F 
Sbjct: 109 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 22  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 77
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                  +WS+DS LL+S S D TLK+
Sbjct: 78  -----------------------AWSSDSNLLVSASDDKTLKI 97

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 9   VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 69  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 122
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 243 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 299 LENDKTIKLW 308

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 73
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 74  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 163
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 164 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++KLW+ + GK +  + GH    Y I
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCI 240

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           L+GHT AV+ VK+  +G  + + S D  IK+W    GK  + + GH   ++ +A S++  
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
           L                                    LVS SDD T+ +W+ +  K  KT
Sbjct: 79  L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 102
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
            + GH   V    F+P    + S SFD+S+++W+  TGK +     H  PV  + F 
Sbjct: 103 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 16  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 71
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                  +WS+DS LL+S S D TLK+
Sbjct: 72  -----------------------AWSSDSNLLVSASDDKTLKI 91

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 10  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 69
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 70  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 123
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 243
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 244 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 299
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 300 LENDKTIKLW 309

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 18  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 74
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 75  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 164
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 165 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 215
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++KLW+ + GK +  + GH    Y I
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKYCI 241

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           L+GHT AV+ VK+  +G  + + S D  IK+W    GK  + + GH   ++ +A S++  
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
           L                                    LVS SDD T+ +W+ +  K  KT
Sbjct: 80  L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 103
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
            + GH   V    F+P    + S SFD+S+++W+  TGK +     H  PV  + F 
Sbjct: 104 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 17  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 72
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                  +WS+DS LL+S S D TLK+
Sbjct: 73  -----------------------AWSSDSNLLVSASDDKTLKI 92

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 9   VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 69  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 122
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 243 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 299 LENDKTIKLW 308

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 73
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 74  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 163
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 164 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++KLW+ + GK +  + GH    Y I
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCI 240

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           L+GHT AV+ VK+  +G  + + S D  IK+W    GK  + + GH   ++ +A S++  
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
           L                                    LVS SDD T+ +W+ +  K  KT
Sbjct: 79  L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 102
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
            + GH   V    F+P    + S SFD+S+++W+  TGK +     H  PV  + F 
Sbjct: 103 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 16  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 71
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                  +WS+DS LL+S S D TLK+
Sbjct: 72  -----------------------AWSSDSNLLVSASDDKTLKI 91

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 31  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 91  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 144
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 264
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 265 NFSVTGG---KWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 321 LENDKTIKLW 330

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 39  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 95
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 96  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 185
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 186 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 236
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++KLW+ + GK +  + GH    Y I
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKYCI 262

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 54/237 (22%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           L+GHT AV+ VK+  +G  + + S D  IK+W    GK  + + GH   ++ +A S++  
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
           L                                    LVS SDD T+ +W+ +  K  KT
Sbjct: 101 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 124
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE--- 411
            + GH   V    F+P    + S SFD+S+++W+  TGK +     H  PV  + F    
Sbjct: 125 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 183
Query: 412 -LIYCFRYP--------SNFYC----VVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
            LI    Y         ++  C    + D +  +S   +S + + +L+ + D+TLK+
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 240

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 38  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 93
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                  +WS+DS LL+S S D TLK+
Sbjct: 94  -----------------------AWSSDSNLLVSASDDKTLKI 113

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 14  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 73
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 74  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 127
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 247
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 248 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 303
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 304 LENDKTIKLW 313

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 22  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 78
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 79  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 168
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 169 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 219
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++KLW+ + GK +  + GH    Y I
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKYCI 245

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           L+GHT AV+ VK+  +G  + + S D  IK+W    GK  + + GH   ++ +A S++  
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
           L                                    LVS SDD T+ +W+ +  K  KT
Sbjct: 84  L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 107
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
            + GH   V    F+P    + S SFD+S+++W+  TGK +     H  PV  + F 
Sbjct: 108 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 163

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 21  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 76
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                  +WS+DS LL+S S D TLK+
Sbjct: 77  -----------------------AWSSDSNLLVSASDDKTLKI 96

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 15  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 75  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 249 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 305 LENDKTIKLW 314

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 80  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++KLW+ + GK +  + GH    Y I
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCI 246

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           L+GHT AV+ VK+  +G  + + S D  IK+W    GK  + + GH   ++ +A S++  
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
           L                                    LVS SDD T+ +W+ +  K  KT
Sbjct: 85  L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 108
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
            + GH   V    F+P    + S SFD+S+++W+  TGK +     H  PV  + F 
Sbjct: 109 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 22  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 77
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                  +WS+DS LL+S S D TLK+
Sbjct: 78  -----------------------AWSSDSNLLVSASDDKTLKI 97

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 33  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 92
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 93  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 146
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 207 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 266
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 267 NFSVTGG---KWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 323 LENDKTIKLW 332

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 41  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 97
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 98  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 187
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 188 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 238
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++KLW+ + GK +  + GH    Y I
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKYCI 264

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 54/237 (22%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           L+GHT AV+ VK+  +G  + + S D  IK+W    GK  + + GH   ++ +A S++  
Sbjct: 43  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
           L                                    LVS SDD T+ +W+ +  K  KT
Sbjct: 103 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 126
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE--- 411
            + GH   V    F+P    + S SFD+S+++W+  TGK +     H  PV  + F    
Sbjct: 127 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 185
Query: 412 -LIYCFRYP--------SNFYC----VVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
            LI    Y         ++  C    + D +  +S   +S + + +L+ + D+TLK+
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 242

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 40  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 95
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                  +WS+DS LL+S S D TLK+
Sbjct: 96  -----------------------AWSSDSNLLVSASDDKTLKI 115

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 12  VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV    C+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L  +  L   +     K Y+  +  K     
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNMVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 302 LENDKTIKLW 311

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 12/227 (5%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
           L+GH K ++ + + P           S+S D   +IW     K    +SGH L ++ V W
Sbjct: 22  LAGHTKAVSSVKFSP-----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 249 GGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQ 306
             D  ++ + S D T+K+W+ + GK ++ LKGH ++V     + +  L  +G+FD + + 
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 307 YSSPEEMKKAALERYNK----IKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
           +     M    L  ++     +  N    L VS S D    +W+ A  +  KT +     
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
            V+ V FSP+G+++ +A+ D  +KLW+ + GK +  + GH    Y I
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI 243

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LA+ S D  +++W           +GHK  +
Sbjct: 12  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 302 LENDKTIKLW 311

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L + S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 77  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++KLW+ + GK +  + GH    Y I
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCI 243

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           L+GHT AV+ VK+  +G  +   S D  IK+W    GK  + + GH   ++ +A S++  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
           L                                    LVS SDD T+ +W+ +  K  KT
Sbjct: 82  L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 105
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
            + GH   V    F+P    + S SFD+S+++W+  TGK +     H  PV  + F 
Sbjct: 106 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+A++S DK IK+W    GKF     GH   +  +    
Sbjct: 19  KFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 74
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                  +WS+DS LL+S S D TLK+
Sbjct: 75  -----------------------AWSSDSNLLVSASDDKTLKI 94

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 12  VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV    C+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNMVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 302 LENDKTIKLW 311

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 12/227 (5%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
           L+GH K ++ + + P           S+S D   +IW     K    +SGH L ++ V W
Sbjct: 22  LAGHTKAVSSVKFSP-----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 249 GGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQ 306
             D  ++ + S D T+K+W+ + GK ++ LKGH ++V     + +  L  +G+FD + + 
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 307 YSSPEEMKKAALERYNK----IKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
           +     M    L  ++     +  N    L VS S D    +W+ A  +  KT +     
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
            V+ V FSP+G+++ +A+ D ++KLW+ + GK +  + GH    Y I
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 12  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
              DK+IKL+
Sbjct: 302 LENDKTIKLY 311

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 77  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++KLW+ + GK +  + GH    Y I
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCI 243

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           L+GHT AV+ VK+  +G  + + S D  IK+W    GK  + + GH   ++ +A S++  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
           L                                    LVS SDD T+ +W+ +  K  KT
Sbjct: 82  L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 105
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
            + GH   V    F+P    + S SFD+S+++W+  TGK +     H  PV  + F 
Sbjct: 106 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 19  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 74
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                  +WS+DS LL+S S D TLK+
Sbjct: 75  -----------------------AWSSDSNLLVSASDDKTLKI 94

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  115 bits (288), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 12  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
              DK+IKL+
Sbjct: 302 LENDKTIKLF 311

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 77  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++KLW+ + GK +  + GH    Y I
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCI 243

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           L+GHT AV+ VK+  +G  + + S D  IK+W    GK  + + GH   ++ +A S++  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
           L                                    LVS SDD T+ +W+ +  K  KT
Sbjct: 82  L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 105
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
            + GH   V    F+P    + S SFD+S+++W+  TGK +     H  PV  + F 
Sbjct: 106 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 19  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 74
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                                  +WS+DS LL+S S D TLK+
Sbjct: 75  -----------------------AWSSDSNLLVSASDDKTLKI 94

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 131/307 (42%), Gaps = 64/307 (20%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
           T+ GHT++V  ++F   G+ LAS S D T++LWD      +    GH + V  ++   +G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
            H+VS S+   ++ W+ QTG       +GH++W+       V  N       S S D   
Sbjct: 205 DHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWV-----RMVRPNQDGTLIASCSNDQTV 258
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG---------------------VIYTGSQDC 261
           R+W V+ ++C   L  H   V C+ W  +                       + +GS+D 
Sbjct: 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
           TIK+W+ + G  +  L GH +WV             G   H+G ++              
Sbjct: 319 TIKMWDVSTGMCLMTLVGHDNWVR------------GVLFHSGGKF-------------- 352
Query: 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381
                     ++S +DD T+ +W+    +  KT +  H+  V  + F     +V + S D
Sbjct: 353 ----------ILSCADDKTLRVWDYKNKRCMKT-LNAHEHFVTSLDFHKTAPYVVTGSVD 401
Query: 382 KSIKLWN 388
           +++K+W 
Sbjct: 402 QTVKVWE 408

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-KTRMTGHQQLV 363
           K+++S   ++K  +E  +K+   A E   SG         +  + + P K  ++GH+  V
Sbjct: 53  KKWTSVIRLQKKVMELESKL-NEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPV 111
Query: 364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
             V F P    + SAS D +IK+W+  TG F    +GH   V  I F+
Sbjct: 112 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 159

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 153/318 (48%), Gaps = 29/318 (9%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
           + GH + V++      G ++ SGS D T+++W   T   +    GH   V    WS+  +
Sbjct: 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMR 168
Query: 164 H--LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
              ++SGS    L+ W+ +TG+   + L GH   +       +HL+   +R VS S+D  
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECI-HTLYGHTSTV-----RCMHLHE--KRVVSGSRDAT 220
Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
            R+WD+   +C+  L GH  AV CV++ G  V+ +G+ D  +KVW+      +  L+GH 
Sbjct: 221 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTLQGHT 279
Query: 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER---LVSGSDD 338
           + V SL     + + +G+ D + + +          L  +  +      +   LVSG+ D
Sbjct: 280 NRVYSLQFDGIHVV-SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD 338
Query: 339 FTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
            T+ +W+    +  +T      HQ  V  + F+ +  +V ++S D ++KLW+  TG+F+ 
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIR 396
Query: 397 VFR-----GHVGPVYQIR 409
                   G  G V++IR
Sbjct: 397 NLVTLESGGSGGVVWRIR 414

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 104/258 (40%), Gaps = 59/258 (22%)
Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG---DGVIYTGSQDCTIKVWET 268
           R VS S D   ++W     KC+  L GHT  V    W     D +I +GS D T+KVW  
Sbjct: 131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNA 186
Query: 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
             G+ I  L GH   V  + L                                       
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLH-------------------------------------- 208
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
            +R+VSGS D T+ +W+    +     M GH   V  V +  DG+ V S ++D  +K+W+
Sbjct: 209 EKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWD 265
Query: 389 GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY----------CVVDMSCCMSLYS-W 437
             T   +   +GH   VY ++F+ I+      +            C+  ++   SL S  
Sbjct: 266 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 325
Query: 438 SADSRLLLSGSKDSTLKV 455
                +L+SG+ DST+K+
Sbjct: 326 ELKDNILVSGNADSTVKI 343

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 91.7 bits (226), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 160/376 (42%), Gaps = 87/376 (23%)
Query: 103 TIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCI 156
           T+  HT+ V ++A   D   +  S S D ++ LW L      +     + TGH ++V  +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
             S+DG+  +SGS  GEL+ WD   G  S     GH K +  ++      +   R+ VSA
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAG-VSTRRFVGHTKDVLSVA-----FSLDNRQIVSA 490
Query: 217 SKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGGDGV---IYTGSQDCTIKVWETT 269
           S+D   ++W+ +L +C   +S    GH   V+CV++  + +   I + S D T+KVW  +
Sbjct: 491 SRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
             KL   L GH  +V+++A+S + +L                                  
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSL---------------------------------- 575
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
               SG  D  + LW+ A  K  K        +++ + FSP+  W+ +A+ +  IK+W+ 
Sbjct: 576 --CASGGKDGVVLLWDLAEGK--KLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDL 630
Query: 390 TTGKFVAVFR----------GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA 439
            +   V   +           + GP    R ++IYC                 +  +WSA
Sbjct: 631 ESKSIVEDLKVDLKAEAEKADNSGPAATKR-KVIYC-----------------TSLNWSA 672
Query: 440 DSRLLLSGSKDSTLKV 455
           D   L SG  D  ++V
Sbjct: 673 DGSTLFSGYTDGVIRV 688

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 135/308 (43%), Gaps = 70/308 (22%)
Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
           D +++ SG  D T+++WD NT       TGH   VLC+ +  D + +++GS    ++ WD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 199
Query: 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW------DVSLRKC 232
             TG+   N L  H + +       +HL       V+ SKD    +W      D++LR+ 
Sbjct: 200 VNTGEML-NTLIHHCEAV-------LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRV 251
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
           ++   GH  AV  V +  D  I + S D TIKVW T+  + +R L GH   +        
Sbjct: 252 LV---GHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI-------- 299
Query: 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP 352
                                  A L+  +++       +VSGS D T+ LW+       
Sbjct: 300 -----------------------ACLQYRDRL-------VVSGSSDNTIRLWDIECGACL 329
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN--------GTTGKF-VAVFRGHVG 403
           +  + GH++LV  + F  D + + S ++D  IK+W+           G   +     H G
Sbjct: 330 RV-LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 386
Query: 404 PVYQIRFE 411
            V++++F+
Sbjct: 387 RVFRLQFD 394

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 72/247 (29%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ 270
           ++ VS  +D   +IWD +  +C   L+GHT +V C+++  + VI TGS D T++VW+   
Sbjct: 144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD-ERVIITGSSDSTVRVWDVNT 202
Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330
           G+++  L  H   V  L                                R+N        
Sbjct: 203 GEMLNTLIHHCEAVLHL--------------------------------RFNN------G 224
Query: 331 RLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
            +V+ S D ++ +W+ A       R  + GH+  VN V F  D +++ SAS D++IK+WN
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN 282
Query: 389 GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS 448
            +T +FV    GH           I C +Y                       RL++SGS
Sbjct: 283 TSTCEFVRTLNGHKRG--------IACLQYR---------------------DRLVVSGS 313
Query: 449 KDSTLKV 455
            D+T+++
Sbjct: 314 SDNTIRL 320

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 5/188 (2%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
           + GH+  V  VA S +G    S S D ++RLW+L      +K  GH   VL +A+S D +
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
            +VSG +   L+ W+ +           H  W++ + + P  L+AP    VS   D   +
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSP-SLDAPV--IVSGGWDNLVK 179
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS-QDCTIKVWETTQGKLIRELKGHGH 282
           +WD++  + V  L GHT  VT V    DG +   S +D   ++W+ T+G+ + E+   G 
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA-GA 238
Query: 283 WVNSLALS 290
            +N +  S
Sbjct: 239 PINQICFS 246

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 159/369 (43%), Gaps = 83/369 (22%)
Query: 104 IAGHTEAVLSVAF--SPD-GRQLASGSGDTTVRLWDLNTQTPMFKCT---------GHKN 151
           + GH   V S+A   +P+   ++ S S D T+  W  N      +C+         GH  
Sbjct: 9   LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
           +V  +A S +G   VS S    L+ W+ Q G+     L GH K +  +++ P +     R
Sbjct: 69  FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL-GHTKDVLSVAFSPDN-----R 122
Query: 212 RFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWG---GDGVIYTGSQDCTIKVW 266
           + VS  +D   R+W+V   +C+  LS   HT  V+CV++       VI +G  D  +KVW
Sbjct: 123 QIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326
           +   G+L+ +LKGH ++V S+ +S + +L                  K      ++  KG
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSL-------------CASSDKDGVARLWDLTKG 228
Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386
            A   + +G+                          +N + FSP+  W+ +A+ +K I++
Sbjct: 229 EALSEMAAGAP-------------------------INQICFSPNRYWMCAAT-EKGIRI 262
Query: 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS 446
           ++      +      + P +Q   +++     P           C+S+ +WSAD   L S
Sbjct: 263 FDLENKDIIV----ELAPEHQGSKKIV-----PE----------CVSI-AWSADGSTLYS 302
Query: 447 GSKDSTLKV 455
           G  D+ ++V
Sbjct: 303 GYTDNVIRV 311

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 140/345 (40%), Gaps = 59/345 (17%)
Query: 99   RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL---- 154
             C  T+ GHT +V    FSPD   LAS S D T+RLWD+ +     K    K + L    
Sbjct: 741  ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSED 799
Query: 155  ----------CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204
                      C +WSADG  ++  +K  ++  +D  T        +GH   I    + P 
Sbjct: 800  PPEDVEVIVKCCSWSADGDKIIVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 858
Query: 205  -HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCT 262
             HL       V A       +W++  R  V    GH   V  V +  DG  + T S D T
Sbjct: 859  DHLA------VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 912
Query: 263  IKVWETTQG------KLIRELKGHGHWVNSLALSTE-------YALRTGAFDHTGKQYSS 309
            I+VWET +        L +E+        ++ L+ +        A +TG  D     Y  
Sbjct: 913  IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID-----YLP 967
Query: 310  PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNH 365
              ++    L  +        E +  G +D  + + E      P  R+     GH++ V H
Sbjct: 968  EAQVSCCCLSPH-------LEYVAFGDEDGAIKIIEL-----PNNRVFSSGVGHKKAVRH 1015
Query: 366  VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410
            + F+ DG+ + S+S D  I++WN  TG +V   + H   V   R 
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL 1059

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 50/244 (20%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETT 269
           +R  S   D   +++     + ++ +  H   V C  +  D   I T S D  +K+W++ 
Sbjct: 635 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 694
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
            GKL+     H   VN           T   +H                           
Sbjct: 695 TGKLVHTYDEHSEQVNCCHF-------TNKSNHL-------------------------- 721
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
             L +GS+DF + LW+    K+ +  M GH   VNH  FSPD + +AS S D +++LW+ 
Sbjct: 722 -LLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD- 778
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
                  V   +      ++   +     P +   +V   CC    SWSAD   ++  +K
Sbjct: 779 -------VRSANERKSINVKRFFLSSEDPPEDVEVIV--KCC----SWSADGDKIIVAAK 825
Query: 450 DSTL 453
           +  L
Sbjct: 826 NKVL 829

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 140/345 (40%), Gaps = 59/345 (17%)
Query: 99   RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL---- 154
             C  T+ GHT +V    FSPD   LAS S D T+RLWD+ +     K    K + L    
Sbjct: 734  ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSED 792
Query: 155  ----------CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204
                      C +WSADG  ++  +K  ++  +D  T        +GH   I    + P 
Sbjct: 793  PPEDVEVIVKCCSWSADGDKIIVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 851
Query: 205  -HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCT 262
             HL       V A       +W++  R  V    GH   V  V +  DG  + T S D T
Sbjct: 852  DHLA------VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905
Query: 263  IKVWETTQG------KLIRELKGHGHWVNSLALSTE-------YALRTGAFDHTGKQYSS 309
            I+VWET +        L +E+        ++ L+ +        A +TG  D     Y  
Sbjct: 906  IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID-----YLP 960
Query: 310  PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNH 365
              ++    L  +        E +  G +D  + + E      P  R+     GH++ V H
Sbjct: 961  EAQVSCCCLSPH-------LEYVAFGDEDGAIKIIEL-----PNNRVFSSGVGHKKAVRH 1008
Query: 366  VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410
            + F+ DG+ + S+S D  I++WN  TG +V   + H   V   R 
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL 1052

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 50/244 (20%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETT 269
           +R  S   D   +++     + ++ +  H   V C  +  D   I T S D  +K+W++ 
Sbjct: 628 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
            GKL+     H   VN           T   +H                           
Sbjct: 688 TGKLVHTYDEHSEQVNCCHF-------TNKSNHL-------------------------- 714
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
             L +GS+DF + LW+    K+ +  M GH   VNH  FSPD + +AS S D +++LW+ 
Sbjct: 715 -LLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD- 771
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
                  V   +      ++   +     P +   +V   CC    SWSAD   ++  +K
Sbjct: 772 -------VRSANERKSINVKRFFLSSEDPPEDVEVIV--KCC----SWSADGDKIIVAAK 818
Query: 450 DSTL 453
           +  L
Sbjct: 819 NKVL 822

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 144/353 (40%), Gaps = 35/353 (9%)
Query: 58  ISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLS 113
           +S+ + L      L+       K  +     Q    I PV R       T+ GH   + +
Sbjct: 1   MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
           + +  D R L S S D  + +WD  T   +       +WV+  A++  G ++  G     
Sbjct: 61  MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 174 LQCWDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARI 224
              ++ +T + +      L+GH  +++            C RF      V++S D    +
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCAL 168
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHW 283
           WD+   +     +GHT  V  +    D  ++ +G+ D + K+W+  +G   +   GH   
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 284 VNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSG 335
           +N++       A  TG+ D T + +    + +       N I G        +   L++G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
            DDF   +W+ A+       + GH   V+ +  + DG  VA+ S+D  +K+WN
Sbjct: 289 YDDFNCNVWD-ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 117/278 (42%), Gaps = 35/278 (12%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
           GH   +  + W  D + LVS S+ G+L  WD   T K    PL     W+   ++ P   
Sbjct: 53  GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
                 L+  C  +   +++G+ R+     R+    L+GHT  ++C ++  D  I T S 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAAL 318
           D T  +W+   G+      GH   V SL+L+ +  L  +GA D + K +   E M +   
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 319 ERY----NKI----KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV---NHVY 367
             +    N I     GNA     +GSDD T  L++    ++  T    H  ++     V 
Sbjct: 223 TGHESDINAICFFPNGNA---FATGSDDATCRLFDLRADQELMT--YSHDNIICGITSVS 277
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
           FS  G+ + +   D +  +W+        V  GH   V
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 21/221 (9%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
           L GH   +  + WG D  ++ + SQD  + +W++     +  +     WV + A + +  
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
            +  G  D+    Y+         + R  ++ G+             ++V+ S D T  L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
           W+    +Q  T    H   V  +  +PD +   S + D S KLW+   G     F GH  
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444
            +  I      CF    N +          L+   AD  L+
Sbjct: 228 DINAI------CFFPNGNAFATGSDDATCRLFDLRADQELM 262

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 144/353 (40%), Gaps = 35/353 (9%)
Query: 58  ISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLS 113
           +S+ + L      L+       K  +     Q    I PV R       T+ GH   + +
Sbjct: 1   MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
           + +  D R L S S D  + +WD  T   +       +WV+  A++  G ++  G     
Sbjct: 61  MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 174 LQCWDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARI 224
              ++ +T + +      L+GH  +++            C RF      V++S D    +
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCAL 168
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHW 283
           WD+   +     +GHT  V  +    D  ++ +G+ D + K+W+  +G   +   GH   
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 284 VNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSG 335
           +N++       A  TG+ D T + +    + +       N I G        +   L++G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
            DDF   +W+ A+       + GH   V+ +  + DG  VA+ S+D  +K+WN
Sbjct: 289 YDDFNCNVWD-ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 117/278 (42%), Gaps = 35/278 (12%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
           GH   +  + W  D + L+S S+ G+L  WD   T K    PL     W+   ++ P   
Sbjct: 53  GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
                 L+  C  +   +++G+ R+     R+    L+GHT  ++C ++  D  I T S 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAAL 318
           D T  +W+   G+      GH   V SL+L+ +  L  +GA D + K +   E M +   
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 319 ERY----NKI----KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV---NHVY 367
             +    N I     GNA     +GSDD T  L++    ++  T    H  ++     V 
Sbjct: 223 TGHESDINAICFFPNGNA---FATGSDDATCRLFDLRADQELMT--YSHDNIICGITSVS 277
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
           FS  G+ + +   D +  +W+        V  GH   V
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 21/221 (9%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
           L GH   +  + WG D  ++ + SQD  + +W++     +  +     WV + A + +  
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
            +  G  D+    Y+         + R  ++ G+             ++V+ S D T  L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
           W+    +Q  T    H   V  +  +PD +   S + D S KLW+   G     F GH  
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444
            +  I      CF    N +          L+   AD  L+
Sbjct: 228 DINAI------CFFPNGNAFATGSDDATCRLFDLRADQELM 262

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 35/340 (10%)
Query: 71  LEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASG 126
           L+       K  +     Q    I PV R       T+ GH   + ++ +  D R L S 
Sbjct: 25  LKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSA 84
Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS- 185
           S D  + +WD  T   +       +WV+  A++  G ++  G        ++ +T + + 
Sbjct: 85  SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 144
Query: 186 --GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARIWDVSLRKCVICLS 237
                L+GH  +++            C RF      V++S D    +WD+   +     +
Sbjct: 145 RVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 192
Query: 238 GHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-LSTEYAL 295
           GHT  V  +    D  ++ +G+ D + K+W+  +G   +   GH   +N++       A 
Sbjct: 193 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 252
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAV 348
            TG+ D T + +    + +       N I G        +   L++G DDF   +W+ A+
Sbjct: 253 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-AL 311
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
                  + GH   V+ +  + DG  VA+ S+D  +K+WN
Sbjct: 312 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 117/278 (42%), Gaps = 35/278 (12%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
           GH   +  + W  D + LVS S+ G+L  WD   T K    PL     W+   ++ P   
Sbjct: 64  GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 121
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
                 L+  C  +   +++G+ R+     R+    L+GHT  ++C ++  D  I T S 
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAAL 318
           D T  +W+   G+      GH   V SL+L+ +  L  +GA D + K +   E M +   
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 233
Query: 319 ERY----NKI----KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV---NHVY 367
             +    N I     GNA     +GSDD T  L++    ++  T    H  ++     V 
Sbjct: 234 TGHESDINAICFFPNGNA---FATGSDDATCRLFDLRADQELMTY--SHDNIICGITSVS 288
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
           FS  G+ + +   D +  +W+        V  GH   V
Sbjct: 289 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 326

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 21/221 (9%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
           L GH   +  + WG D  ++ + SQD  + +W++     +  +     WV + A + +  
Sbjct: 62  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 121
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
            +  G  D+    Y+         + R  ++ G+             ++V+ S D T  L
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 179
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
           W+    +Q  T    H   V  +  +PD +   S + D S KLW+   G     F GH  
Sbjct: 180 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444
            +  I      CF    N +          L+   AD  L+
Sbjct: 239 DINAI------CFFPNGNAFATGSDDATCRLFDLRADQELM 273

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 35/340 (10%)
Query: 71  LEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASG 126
           L+       K  +     Q    I PV R       T+ GH   + ++ +  D R L S 
Sbjct: 14  LKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSA 73
Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS- 185
           S D  + +WD  T   +       +WV+  A++  G ++  G        ++ +T + + 
Sbjct: 74  SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 186 --GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARIWDVSLRKCVICLS 237
                L+GH  +++            C RF      V++S D    +WD+   +     +
Sbjct: 134 RVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 238 GHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-LSTEYAL 295
           GHT  V  +    D  ++ +G+ D + K+W+  +G   +   GH   +N++       A 
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAV 348
            TG+ D T + +    + +       N I G        +   L++G DDF   +W+ A+
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-AL 300
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
                  + GH   V+ +  + DG  VA+ S+D  +K+WN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 117/278 (42%), Gaps = 35/278 (12%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
           GH   +  + W  D + LVS S+ G+L  WD   T K    PL     W+   ++ P   
Sbjct: 53  GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
                 L+  C  +   +++G+ R+     R+    L+GHT  ++C ++  D  I T S 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAAL 318
           D T  +W+   G+      GH   V SL+L+ +  L  +GA D + K +   E M +   
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 319 ERY----NKI----KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV---NHVY 367
             +    N I     GNA     +GSDD T  L++    ++  T    H  ++     V 
Sbjct: 223 TGHESDINAICFFPNGNA---FATGSDDATCRLFDLRADQELMT--YSHDNIICGITSVS 277
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
           FS  G+ + +   D +  +W+        V  GH   V
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 21/221 (9%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
           L GH   +  + WG D  ++ + SQD  + +W++     +  +     WV + A + +  
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
            +  G  D+    Y+         + R  ++ G+             ++V+ S D T  L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
           W+    +Q  T    H   V  +  +PD +   S + D S KLW+   G     F GH  
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444
            +  I      CF    N +          L+   AD  L+
Sbjct: 228 DINAI------CFFPNGNAFATGSDDATCRLFDLRADQELM 262

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 35/340 (10%)
Query: 71  LEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASG 126
           L+       K  +     Q    I PV R       T+ GH   + ++ +  D R L S 
Sbjct: 14  LKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSA 73
Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS- 185
           S D  + +WD  T   +       +WV+  A++  G ++  G        ++ +T + + 
Sbjct: 74  SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 186 --GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARIWDVSLRKCVICLS 237
                L+GH  +++            C RF      V++S D    +WD+   +     +
Sbjct: 134 RVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 238 GHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-LSTEYAL 295
           GHT  V  +    D  ++ +G+ D + K+W+  +G   +   GH   +N++       A 
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAV 348
            TG+ D T + +    + +       N I G        +   L++G DDF   +W+ A+
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-AL 300
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
                  + GH   V+ +  + DG  VA+ S+D  +K+WN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 117/278 (42%), Gaps = 35/278 (12%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
           GH   +  + W  D + L+S S+ G+L  WD   T K    PL     W+   ++ P   
Sbjct: 53  GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
                 L+  C  +   +++G+ R+     R+    L+GHT  ++C ++  D  I T S 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAAL 318
           D T  +W+   G+      GH   V SL+L+ +  L  +GA D + K +   E M +   
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 319 ERY----NKI----KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV---NHVY 367
             +    N I     GNA     +GSDD T  L++    ++  T    H  ++     V 
Sbjct: 223 TGHESDINAICFFPNGNA---FATGSDDATCRLFDLRADQELMT--YSHDNIICGITSVS 277
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
           FS  G+ + +   D +  +W+        V  GH   V
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 21/221 (9%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
           L GH   +  + WG D  ++ + SQD  + +W++     +  +     WV + A + +  
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
            +  G  D+    Y+         + R  ++ G+             ++V+ S D T  L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
           W+    +Q  T    H   V  +  +PD +   S + D S KLW+   G     F GH  
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444
            +  I      CF    N +          L+   AD  L+
Sbjct: 228 DINAI------CFFPNGNAFATGSDDATCRLFDLRADQELM 262

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 5/188 (2%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
           + GH+  V  V  S DG+   SGS D T+RLWDL T T   +  GH   VL +A+S+D +
Sbjct: 82  LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
            +VSGS+   ++ W+             H +W++ + + P   N+     VS   D   +
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP---NSSNPIIVSCGWDKLVK 198
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGVI-YTGSQDCTIKVWETTQGKLIRELKGHGH 282
           +W+++  K      GHT  +  V    DG +  +G +D    +W+  +GK +  L G G 
Sbjct: 199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GD 257
Query: 283 WVNSLALS 290
            +N+L  S
Sbjct: 258 IINALCFS 265

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 154/364 (42%), Gaps = 73/364 (20%)
Query: 102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDL-----NTQTPMFKCTGHKNWVLC 155
            T+ GH   V  +A +P     + S S D T+ +W L     N   P     GH ++V  
Sbjct: 32  GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
           +  S+DG+  +SGS  G L+ WD  TG  +     GH K +  ++      ++  R+ VS
Sbjct: 92  VVISSDGQFALSGSWDGTLRLWDLTTGTTT-RRFVGHTKDVLSVA-----FSSDNRQIVS 145
Query: 216 ASKDGDARIWD-VSLRKCVICLSGHTLAVTCVKW---GGDGVIYTGSQDCTIKVWETTQG 271
            S+D   ++W+ + + K  +    H+  V+CV++     + +I +   D  +KVW     
Sbjct: 146 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205
Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
           KL     GH  ++N++ +S + +L                                    
Sbjct: 206 KLKTNHIGHTGYLNTVTVSPDGSL------------------------------------ 229
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391
             SG  D    LW+    K   T   G   ++N + FSP+  W+ +A+   SIK+W+   
Sbjct: 230 CASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCAAT-GPSIKIWD-LE 285
Query: 392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451
           GK +         V +++ E+I       +     +   C SL +WSAD + L +G  D+
Sbjct: 286 GKII---------VDELKQEVI-------STSSKAEPPQCTSL-AWSADGQTLFAGYTDN 328
Query: 452 TLKV 455
            ++V
Sbjct: 329 LVRV 332

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 5/188 (2%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
           + GH+  V  V  S DG+   SGS D T+RLWDL T T   +  GH   VL +A+S+D +
Sbjct: 59  LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
            +VSGS+   ++ W+             H +W++ + + P   N+     VS   D   +
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP---NSSNPIIVSCGWDKLVK 175
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGVI-YTGSQDCTIKVWETTQGKLIRELKGHGH 282
           +W+++  K      GHT  +  V    DG +  +G +D    +W+  +GK +  L G G 
Sbjct: 176 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GD 234
Query: 283 WVNSLALS 290
            +N+L  S
Sbjct: 235 IINALCFS 242

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 154/364 (42%), Gaps = 73/364 (20%)
Query: 102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDL-----NTQTPMFKCTGHKNWVLC 155
            T+ GH   V  +A +P     + S S D T+ +W L     N   P     GH ++V  
Sbjct: 9   GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
           +  S+DG+  +SGS  G L+ WD  TG  +     GH K +  ++      ++  R+ VS
Sbjct: 69  VVISSDGQFALSGSWDGTLRLWDLTTGTTT-RRFVGHTKDVLSVA-----FSSDNRQIVS 122
Query: 216 ASKDGDARIWD-VSLRKCVICLSGHTLAVTCVKW---GGDGVIYTGSQDCTIKVWETTQG 271
            S+D   ++W+ + + K  +    H+  V+CV++     + +I +   D  +KVW     
Sbjct: 123 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 182
Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
           KL     GH  ++N++ +S + +L                                    
Sbjct: 183 KLKTNHIGHTGYLNTVTVSPDGSL------------------------------------ 206
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391
             SG  D    LW+    K   T   G   ++N + FSP+  W+ +A+   SIK+W+   
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCAAT-GPSIKIWD-LE 262
Query: 392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451
           GK +         V +++ E+I       +     +   C SL +WSAD + L +G  D+
Sbjct: 263 GKII---------VDELKQEVI-------STSSKAEPPQCTSL-AWSADGQTLFAGYTDN 305
Query: 452 TLKV 455
            ++V
Sbjct: 306 LVRV 309

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 148/354 (41%), Gaps = 31/354 (8%)
Query: 58  ISDHELLVPLGSYLEKHKVSVEKV---LSIVYQPQAVFRIRP----VNRCSATIAGHTEA 110
           + ++E L  L S  E  K  +E+    L  V   Q   R+      V +   T+ GH   
Sbjct: 7   LHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNK 66
Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK 170
           VL + +  D R++ S S D  V +WD  T       T    WV+  A++  G  +  G  
Sbjct: 67  VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL 126
Query: 171 AGELQCWDPQTGKPSGN------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224
             +   + P T   + N       ++ H  +++  S+    +     + ++AS DG   +
Sbjct: 127 DNKCSVY-PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-----QILTASGDGTCAL 180
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWG---GDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
           WDV   + +    GH   V C+            +G  D    VW+   G+ ++  + H 
Sbjct: 181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE 240
Query: 282 HWVNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP-------ERLV 333
             VNS+    +  A  +G+ D T + Y    + + A   + + I G +          L 
Sbjct: 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF 300
Query: 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
           +G +D+T+ +W+  +     + + GH+  V+ +  SPDG    S S+D ++++W
Sbjct: 301 AGYNDYTINVWD-VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 114/281 (40%), Gaps = 28/281 (9%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
           GH N VLC+ W  D + +VS S+ G++  WD  T     + ++    W+   ++ P    
Sbjct: 62  GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE-HAVTMPCTWVMACAYAPSGCA 120
Query: 208 APCRRFVSASKDGDARIW--------DVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
             C        D    ++        +++ +K  + +  + L+  C     D  I T S 
Sbjct: 121 IAC-----GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA-CSFTNSDMQILTASG 174
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALS---TEYALRTGAFDHTGKQYSSPEEMKKA 316
           D T  +W+   G+L++   GHG  V  L L+   T     +G  D     +         
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Query: 317 ALERYNKIKGN-----APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV---NHVYF 368
           A E +     +     + +   SGSDD T  L++    ++    +   + ++   + V F
Sbjct: 235 AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE--VAIYSKESIIFGASSVDF 292
Query: 369 SPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409
           S  G+ + +   D +I +W+   G  V++  GH   V  +R
Sbjct: 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLR 333

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 93/235 (39%), Gaps = 27/235 (11%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
           L GH   V C+ W  D   I + SQD  + VW++        +     WV + A + +  
Sbjct: 60  LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 119
Query: 294 ALRTGAFDHTGKQY----SSPEEM---KKAALERYNKIKG----NAPERLVSGSDDFTMF 342
           A+  G  D+    Y       E M   KK+     N +      N+  ++++ S D T  
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA 179
Query: 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTGKFVAVFRG 400
           LW+   S Q      GH   V  +  +P   G    S   DK   +W+  +G+ V  F  
Sbjct: 180 LWDVE-SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET 238
Query: 401 HVGPVYQIRFELIYCFRYPSN--FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453
           H   V  +R+       YPS   F    D + C  LY   AD  + +  SK+S +
Sbjct: 239 HESDVNSVRY-------YPSGDAFASGSDDATC-RLYDLRADREVAIY-SKESII 284

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 132/335 (39%), Gaps = 72/335 (21%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTT-----------VRLWD----------LNTQTPMFK 145
           HT  V  V FS DG  LA+G   TT            RL D          LNT +    
Sbjct: 63  HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS---- 118
Query: 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
                 ++  + +S DGK L +G++   ++ WD +  K     L GH++ I  + + P  
Sbjct: 119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV-MILQGHEQDIYSLDYFP-- 175
Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIK 264
                 + VS S D   RIWD+   +C + LS      T     GDG  I  GS D  ++
Sbjct: 176 ---SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 232
Query: 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324
           VW++  G L+  L             +E    TG  D                   Y+ +
Sbjct: 233 VWDSETGFLVERL------------DSENESGTGHKDSV-----------------YSVV 263
Query: 325 KGNAPERLVSGSDDFTMFLWE------PAVSKQPKT-----RMTGHQQLVNHVYFSPDGQ 373
                + +VSGS D ++ LW        + SK P +        GH+  V  V  + + +
Sbjct: 264 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 323
Query: 374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++ S S D+ +  W+  +G  + + +GH   V  +
Sbjct: 324 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 38/220 (17%)
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL----- 277
           R  DV L K +     HT  V CVK+  DG       + T +V+  + G L+  L     
Sbjct: 51  REIDVELHKSL----DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSA 106
Query: 278 --KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE-----------------MKKAAL 318
             K   +   S + S++  +R+  F   GK  ++  E                 ++    
Sbjct: 107 ANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ 166
Query: 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVAS 377
           + Y+     + ++LVSGS D T+ +W+    +   T     +  V  V  SP DG+++A+
Sbjct: 167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--EDGVTTVAVSPGDGKYIAA 224
Query: 378 ASFDKSIKLWNGTTGKFVAVFR-------GHVGPVYQIRF 410
            S D+++++W+  TG  V           GH   VY + F
Sbjct: 225 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 264

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC--IAWSAD 161
           ++GH   V ++ ++  G  L SGS D TVR+WD+          GH + V C  I    +
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 162 GKHLVSGSKAGELQCWD-------PQTGK----------PSGNP-----LSGHKKWITGI 199
            K++V+GS+   L  W        P  G+          P  NP     L GH   +  +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
           S    H N      VS S D    +WDV+  KC+  LSGHT  +    +  +     + S
Sbjct: 277 SG---HGNI----VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
            D TI++W+   G+L+  L+GH   V  L LS ++ +   A
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAA 370

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 118/269 (43%), Gaps = 42/269 (15%)
Query: 174 LQCWDPQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232
           L+ W      P    L GH    IT + +E  ++       ++ + D   R++D   +K 
Sbjct: 102 LKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYV-------ITGADDKMIRVYDSINKKF 154
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
           ++ LSGH   V  +K+   G++ +GS D T++VW+  +G      +GH   V  L +  E
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI-VE 213
Query: 293 YA----LRTGAFDHT---------------GKQ------YSSPEE------MKKAALERY 321
           Y     + TG+ D+T               G++      + +PEE      + +  +   
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273
Query: 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381
             + G+    +VSGS D T+ +W+ A  K     ++GH   +    +  + +   SAS D
Sbjct: 274 RTVSGHG-NIVVSGSYDNTLIVWDVAQMKCLYI-LSGHTDRIYSTIYDHERKRCISASMD 331
Query: 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410
            +I++W+   G+ +   +GH   V  +R 
Sbjct: 332 TTIRIWDLENGELMYTLQGHTALVGLLRL 360

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 97/221 (43%), Gaps = 33/221 (14%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC--IAWSAD 161
           ++GH   V ++ ++  G  L SGS D TVR+WD+          GH + V C  I    +
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 162 GKHLVSGSKAGELQCWD-------PQTGK----------PSGNP-----LSGHKKWITGI 199
            K++V+GS+   L  W        P  G+          P  NP     L GH   +  +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
           S    H N      VS S D    +WDV+  KC+  LSGHT  +    +  +     + S
Sbjct: 277 SG---HGNI----VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
            D TI++W+   G+L   L+GH   V  L LS ++ +   A
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAA 370

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 113/268 (42%), Gaps = 40/268 (14%)
Query: 174 LQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232
           L+ W      P    L GH    IT + +E  ++       ++ + D   R++D   +K 
Sbjct: 102 LKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYV-------ITGADDKXIRVYDSINKKF 154
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
           ++ LSGH   V  +K+   G++ +GS D T++VW+  +G      +GH   V  L +  E
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI-VE 213
Query: 293 YA----LRTGAFDHTGKQYSSPEE--MKKAALERYNKIKGNAPER--------------- 331
           Y     + TG+ D+T   +  P+E  +     E    +  + PE                
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASV 273
Query: 332 ---------LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VSGS D T+ +W+ A  K     ++GH   +    +  + +   SAS D 
Sbjct: 274 RTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYI-LSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRF 410
           +I++W+   G+     +GH   V  +R 
Sbjct: 333 TIRIWDLENGELXYTLQGHTALVGLLRL 360

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92  FRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
           FRIR  N  +         H + + S+A  P    + SGS D TV+LW+      + +  
Sbjct: 77  FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
            GH+++V+C+A++  D     SG     ++ W      P+    +G ++ +  + + P+ 
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
              P + + ++AS D   +IWD   + CV  L GH   V+   +     +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
           K+W ++  K+ + L 
Sbjct: 253 KIWNSSTYKVEKTLN 267

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPEE 312
           I  GS D  I+V+    G+ + + + H  ++ S+A+  T+  + +G+ D T K ++    
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 313 MKKAALERYNK----------IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
               ALE+  +               P    SG  D T+ +W    S    T  TG ++ 
Sbjct: 130 W---ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 363 VNHV--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
           VN+V  Y  PD  ++ +AS D +IK+W+  T   VA   GH+  V
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92  FRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
           FRIR  N  +         H + + S+A  P    + SGS D TV+LW+      + +  
Sbjct: 77  FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
            GH+++V+C+A++  D     SG     ++ W      P+    +G ++ +  + + P+ 
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
              P + + ++AS D   +IWD   + CV  L GH   V+   +     +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
           K+W ++  K+ + L 
Sbjct: 253 KIWNSSTYKVEKTLN 267

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPEE 312
           I  GS D  I+V+    G+ + + + H  ++ S+A+  T+  + +G+ D T K ++    
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 313 MKKAALERYNK----------IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
               ALE+  +               P    SG  D T+ +W    S    T  TG ++ 
Sbjct: 130 W---ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 363 VNHV--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
           VN+V  Y  PD  ++ +AS D +IK+W+  T   VA   GH+  V
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 12/194 (6%)
Query: 92  FRIRPVNRCS----ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
           FRIR  N  +         H + + S+A  P    + SGS D TV+LW+      + +  
Sbjct: 77  FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
            GH+++V+C+A++  D     SG     ++ W      P+    +G ++ +  + + P+ 
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
              P + + ++AS D   +IWD   + CV  L GH   V+   +     +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIREL 277
           K+W ++  K+ + L
Sbjct: 253 KIWNSSTYKVEKTL 266

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPEE 312
           I  GS D  I+V+    G+ + + + H  ++ S+A+  T+  + +G+ D T K ++    
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 313 MKKAALERYNK----------IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
               ALE+  +               P    SG  D T+ +W    S    T  TG ++ 
Sbjct: 130 W---ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 363 VNHV--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
           VN+V  Y  PD  ++ +AS D +IK+W+  T   VA   GH+  V
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 12/194 (6%)
Query: 92  FRIRPVNRCS----ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
           FRIR  N  +         H + + S+A  P    + SGS D TV+LW+      + +  
Sbjct: 77  FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
            GH+++V+C+A++  D     SG     ++ W      P+    +G ++ +  + + P+ 
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
              P + + ++AS D   +IWD   + CV  L GH   V+   +     +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIREL 277
           K+W ++  K+ + L
Sbjct: 253 KIWNSSTYKVEKTL 266

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPEE 312
           I  GS D  I+V+    G+ + + + H  ++ S+A+  T+  + +G+ D T K ++    
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 313 MKKAALERYNK----------IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
               ALE+  +               P    SG  D T+ +W    S    T  TG ++ 
Sbjct: 130 W---ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 363 VNHV--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
           VN+V  Y  PD  ++ +AS D +IK+W+  T   VA   GH+  V
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 7/188 (3%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
           ++ GH   V+SV  S      AS S D  +RLWDL     +            +A+S D 
Sbjct: 75  SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
           ++L +G+  G++  +  ++GK     L    K+I  I++ P       +   S + DG  
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSP-----DGKYLASGAIDGII 188
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
            I+D++  K +  L GH + +  + +  D  ++ T S D  IK+++     L   L GH 
Sbjct: 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248
Query: 282 HWVNSLAL 289
            WV ++A 
Sbjct: 249 SWVLNVAF 256

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 115/290 (39%), Gaps = 57/290 (19%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
           E + SVA+  +G  LA G+    V+LWD+  Q  +   T H   V  ++W  +   L SG
Sbjct: 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSG 205
Query: 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
           S++G +   D +  +     LSGH + + G+ W P       R   S   D    +W  +
Sbjct: 206 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSA 260
Query: 229 LRKC----VICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGH 280
             +     +   + H  AV  V W      V+ T  G+ D  I++W    G  +  +  H
Sbjct: 261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--D 338
              V S+  S  Y                                    + L+SG     
Sbjct: 321 SQ-VCSILWSPHY------------------------------------KELISGHGFAQ 343
Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
             + +W+ P ++K     + GH   V  +  SPDG  VASA+ D++++LW
Sbjct: 344 NQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 115/290 (39%), Gaps = 57/290 (19%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
           E + SVA+  +G  LA G+    V+LWD+  Q  +   T H   V  ++W  +   L SG
Sbjct: 159 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSG 216
Query: 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
           S++G +   D +  +     LSGH + + G+ W P       R   S   D    +W  +
Sbjct: 217 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSA 271
Query: 229 LRKC----VICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGH 280
             +     +   + H  AV  V W      V+ T  G+ D  I++W    G  +  +  H
Sbjct: 272 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 331
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--D 338
              V S+  S  Y                                    + L+SG     
Sbjct: 332 SQ-VCSILWSPHY------------------------------------KELISGHGFAQ 354
Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
             + +W+ P ++K     + GH   V  +  SPDG  VASA+ D++++LW
Sbjct: 355 NQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 113/291 (38%), Gaps = 49/291 (16%)
Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVSGS 169
           V SV +S DG  L+ G G+  V ++D+ +QT +    GH+  V C++W+   +H L SGS
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGS 193
Query: 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229
           ++G +   D +        L GH   + G++W    L     +  S   D   +IWD   
Sbjct: 194 RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-----QLASGGNDNVVQIWDARS 248
Query: 230 RKCVICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGHGHWVN 285
                  + H  AV  V W      ++ T  G+ D  I  W    G  +  +   G  V 
Sbjct: 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVT 307
Query: 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345
           SL  S                  S E M                     G  D  + +W 
Sbjct: 308 SLIWSPH----------------SKEIMS------------------THGFPDNNLSIWS 333
Query: 346 PAVSKQPK-TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395
            + S   K   +  H   V +   SPDG+ +++A+ D+++K W    G  V
Sbjct: 334 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 117/290 (40%), Gaps = 57/290 (19%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
           E + SVA+  +G  LA G+    V+LWD+  Q  +   T H   V  ++W++    L SG
Sbjct: 68  EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSG 125
Query: 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
           S++G +   D +  +     LSGH + + G+ W P       R   S   D    +W  +
Sbjct: 126 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSA 180
Query: 229 LRKC----VICLSGHTLAVTCVKW--GGDGVIYT--GSQDCTIKVWETTQGKLIRELKGH 280
             +     +   + H  AV  V W      V+ T  G+ D  I++W    G  +  +  H
Sbjct: 181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--D 338
              V S+  S  Y                                    + L+SG     
Sbjct: 241 SQ-VCSILWSPHY------------------------------------KELISGHGFAQ 263
Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
             + +W+ P ++K  +  + GH   V  +  SPDG  VASA+ D++++LW
Sbjct: 264 NQLVIWKYPTMAKVAE--LKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 125/338 (36%), Gaps = 70/338 (20%)
Query: 148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCW-----DPQTGKPSGNPLSGHKKWITGISW 201
           GH  WV  +A SA   +L+ S S+   L  W     D + G P      GH   +     
Sbjct: 15  GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSFKGHSHIV----- 68
Query: 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260
           +   L A     +SAS D   R+WDV+  +      GH   V  V       +I +GS+D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
            TIKVW T +G+ +  L GH  WV+ + +                               
Sbjct: 129 KTIKVW-TIKGQCLATLLGHNDWVSQVRVVP----------------------------- 158
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
            N+   +    ++S  +D  +  W      Q +    GH   +N +  SPDG  +ASA  
Sbjct: 159 -NEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL------------IYCFRYPSNFYCVVDM 428
           D  I LWN    K +         V+ + F              I  F      Y V D+
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQ-YLVDDL 274
Query: 429 SCCMSLYS-----------WSADSRLLLSGSKDSTLKV 455
               + YS           WSAD + L +G  D+ ++V
Sbjct: 275 RPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 131/321 (40%), Gaps = 40/321 (12%)
Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
           C  T+ GH+  V S+ ++P+   + S S D  + +W+  T         H  WV+  A++
Sbjct: 58  CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 160 ADGKHLVSGSKAGELQCW------DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
            +G+ +  G        +      D     P    L+GHK + +   + P        R 
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET----RL 173
Query: 214 VSASKDGDARIWDVSLRKCVICL-----SGHTLAVTCVKWG--GDGVIYTGSQDCTIKVW 266
           ++ S D    +WDV+  + +        SGHT  V  +        +  +GS D T+++W
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Query: 267 E-TTQGKLIRELKGHGHWVNSLALSTE---------------YALRTGAFDHTGKQYSSP 310
           +     + +R   GH   +NS+    +               + +RTG   H  + Y+  
Sbjct: 234 DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNRE 290
Query: 311 EEMKKAALERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSK---QPKTRMTGHQQLVNHV 366
            +     L     +  +   RL+ +G  +   ++W+  +++      T    H+  ++ +
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350
Query: 367 YFSPDGQWVASASFDKSIKLW 387
             S DG  + + S+DK++K+W
Sbjct: 351 GLSSDGSALCTGSWDKNLKIW 371

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 8/194 (4%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
           + GH   V  +A S +     S S D T+RLWDL T T   +  GH++ V  +A+S D +
Sbjct: 72  LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 164 HLVSGSKAGELQCWDPQTG-KPSGNPLSGHKKWITGISWEPVHLNAPCRR-----FVSAS 217
            ++S     E++ W+     K S      H  W++ + + P+  +A   +     F S  
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE 276
            DG  ++W+ + +        H   V  +    +G  I TG +D  + +W+       + 
Sbjct: 192 WDGRLKVWNTNFQ-IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250
Query: 277 LKGHGHWVNSLALS 290
               G  +N +A +
Sbjct: 251 EFDAGSTINQIAFN 264

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 134/327 (40%), Gaps = 79/327 (24%)
Query: 94  IRPVNRCSATIAGHTEAVLSV--AFS----PDGRQLASGSGDTTVRLWDLNTQ------- 140
           I+ V R    + GH++ V S+   FS     D   L SGS D TV +W L  +       
Sbjct: 9   IQVVKR--GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG 66
Query: 141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS 200
            P    TGH ++V  +A S +    +S S    L+ WD +TG  +     GH+  +  ++
Sbjct: 67  IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG-TTYKRFVGHQSEVYSVA 125
Query: 201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDGVIYTG 257
           + P +     R+ +SA  + + ++W++ L +C    +    H+  V+CV++    ++ + 
Sbjct: 126 FSPDN-----RQILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYS--PIMKSA 177
Query: 258 SQ-------------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG 304
           ++             D  +KVW  T  ++    K H   VN L++S             G
Sbjct: 178 NKVQPFAPYFASVGWDGRLKVW-NTNFQIRYTFKAHESNVNHLSISP-----------NG 225
Query: 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364
           K                          + +G  D  + +W+      P+ R       +N
Sbjct: 226 K-------------------------YIATGGKDKKLLIWDILNLTYPQ-REFDAGSTIN 259
Query: 365 HVYFSPDGQWVASASFDKSIKLWNGTT 391
            + F+P  QWVA  + D+ +K++N  T
Sbjct: 260 QIAFNPKLQWVAVGT-DQGVKIFNLMT 285

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 332 LVSGSDDFTMFLWEPAVSKQ------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
           L+SGS D T+ +W+    +Q      P   +TGH   V+ +  S +  +  S+S+DK+++
Sbjct: 42  LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 386 LWNGTTGKFVAVFRGHVGPVYQIRF 410
           LW+  TG     F GH   VY + F
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAF 126

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 135/366 (36%), Gaps = 78/366 (21%)
Query: 103 TIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
           T+ GH   V S+A S      L S S D T+  W L         P+    GH + V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
             +ADG + +S S    L+ WD  TG+ +     GHK  +       V ++      +S 
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
           S+D   ++W +   +C+  L GH   V+ V      K   D V I +   D  +K W   
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
           Q ++  +  GH   +N+L  S +  L                                  
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
             + S   D  + LW  A  K   T     Q  V  + FSP+  W+A+A           
Sbjct: 211 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAA----------- 255
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
            T   + VF   + P Y     L+   R     Y        +SL +WSAD + L +G  
Sbjct: 256 -TATGIKVFS--LDPQY-----LVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGYT 306
Query: 450 DSTLKV 455
           D+ ++V
Sbjct: 307 DNVIRV 312

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 135/366 (36%), Gaps = 78/366 (21%)
Query: 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
           T+ GH   V S+A S      L S S D T+  W L         P+    GH + V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
             +ADG + +S S    L+ WD  TG+ +     GHK  +       V ++      +S 
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
           S+D   ++W +   +C+  L GH   V+ V      K   D V I +   D  +K W   
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
           Q ++  +  GH   +N+L  S +  L                                  
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
             + S   D  + LW  A  K   T     Q  V  + FSP+  W+A+A           
Sbjct: 211 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAA----------- 255
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
            T   + VF   + P Y     L+   R     Y        +SL +WSAD + L +G  
Sbjct: 256 -TATGIKVFS--LDPQY-----LVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGYT 306
Query: 450 DSTLKV 455
           D+ ++V
Sbjct: 307 DNVIRV 312

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 135/366 (36%), Gaps = 78/366 (21%)
Query: 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
           T+ GH   V S+A S      L S S D T+  W L         P+    GH + V   
Sbjct: 6   TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
             +ADG + +S S    L+ WD  TG+ +     GHK  +       V ++      +S 
Sbjct: 66  TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 119
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
           S+D   ++W +   +C+  L GH   V+ V      K   D V I +   D  +K W   
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
           Q ++  +  GH   +N+L  S +  L                                  
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 204
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
             + S   D  + LW  A  K   T     Q  V  + FSP+  W+A+A           
Sbjct: 205 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAA----------- 249
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
            T   + VF   + P Y     L+   R     Y        +SL +WSAD + L +G  
Sbjct: 250 -TATGIKVFS--LDPQY-----LVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGYT 300
Query: 450 DSTLKV 455
           D+ ++V
Sbjct: 301 DNVIRV 306

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 135/366 (36%), Gaps = 78/366 (21%)
Query: 103 TIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
           T+ GH   V S+A S      L S S D T+  W L         P+    GH + V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
             +ADG + +S S    L+ WD  TG+ +     GHK  +       V ++      +S 
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
           S+D   ++W +   +C+  L GH   V+ V      K   D V I +   D  +K W   
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
           Q ++  +  GH   +N+L  S +  L                                  
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
             + S   D  + LW  A  K   T     Q  V  + FSP+  W+A+A           
Sbjct: 211 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAA----------- 255
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
            T   + VF   + P Y     L+   R     Y        +SL +WSAD + L +G  
Sbjct: 256 -TATGIKVFS--LDPQY-----LVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGYT 306
Query: 450 DSTLKV 455
           D+ ++V
Sbjct: 307 DNVIRV 312

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 11/212 (5%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL- 165
           H + V +V+    G Q  SGS D  +++WDL  Q  +     H   V C+A S     + 
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWI-TGISWEPVHLNAPCRRFVSASKDGDARI 224
           +S S+   +  WD +  KP+         ++ T ++W P         FV   ++G   +
Sbjct: 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV----FVFGDENGTVSL 241
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG--SQDCTIKVWETTQGKLIRELKGHGH 282
            D     CV+  + H+  VT + +    V +    S+DC++ V +++  +L R  + H  
Sbjct: 242 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHRD 300
Query: 283 WVNSLALS--TEYALRTGAFDHTGKQYSSPEE 312
           +V     S      L T  +DH    +  P E
Sbjct: 301 FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 135/366 (36%), Gaps = 78/366 (21%)
Query: 103 TIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
           T+ GH   V S+A S      L S S D T+  W L         P+    GH + V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
             +ADG + +S S    L+ WD  TG+ +     GHK  +       V ++      +S 
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVX-----SVDIDKKASXIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
           S+D   ++W +   +C+  L GH   V+ V      K   D V I +   D  +K W   
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
           Q ++  +  GH   +N+L  S +  L                                  
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
             + S   D  + LW  A  K   T     Q  V  + FSP+  W+A+A           
Sbjct: 211 --IASAGKDGEIXLWNLAAKKAXYT--LSAQDEVFSLAFSPNRYWLAAA----------- 255
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
            T   + VF   + P Y     L+   R     Y        +SL +WSAD + L +G  
Sbjct: 256 -TATGIKVFS--LDPQY-----LVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGYT 306
Query: 450 DSTLKV 455
           D+ ++V
Sbjct: 307 DNVIRV 312

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 102/235 (43%), Gaps = 29/235 (12%)
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT---GHKNWVLCIAWSADGKHLVSGSK 170
           +A++P G  LAS  GD  +R+W     + + K     GH+  V  +AWS  G +L S S 
Sbjct: 22  LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 171 AGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPV-HLNAPCRRFVSASKDGDARIWDVS 228
                 W   Q        L GH+  +  ++W P  +L A C      S+D    +W+V 
Sbjct: 82  DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC------SRDKSVWVWEVD 135
Query: 229 LR---KCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLI--RELKGHGH 282
                +CV  L+ HT  V  V W     ++ + S D T+K++   +   +    L+GH  
Sbjct: 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES 195
Query: 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337
            V SL           AFD +G++ +S  + +   + R   + GN      SGSD
Sbjct: 196 TVWSL-----------AFDPSGQRLASCSDDRTVRIWR-QYLPGNEQGVACSGSD 238

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFE---- 411
           GHQ+ V  V +SP G ++ASASFD +  +W      F  V    GH   V  + +     
Sbjct: 59  GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 412 -LIYCFRYPSNFYCVVD----MSCCMSLYS---------WSADSRLLLSGSKDSTLKV 455
            L  C R  S +   VD      C   L S         W     LL S S D T+K+
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 20/211 (9%)
Query: 77  SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
           S +  +SI  + ++  R   ++   A I GH   V  VA+S DG  LA+ S D +V +W+
Sbjct: 77  SFDSTVSIWAKEESADRTFEMDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
Query: 137 LNTQTPMFKCTG----HKNWVLCIAWSADGKHLVSGSKAGELQCW-DPQTGKPSGNPLSG 191
            +     ++C      H   V  + W      L S S    ++ W D          L+G
Sbjct: 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG 195
Query: 192 HKKWITGISW-EPVHLNAPCRRFVSASKDGDARIW-----DVSLRKCVICLS----GHTL 241
           H+    G  W           R  S S D   R+W     D   ++  +C +     H  
Sbjct: 196 HE----GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251
Query: 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGK 272
            V  V WG +G+I +   D  + V+E   G+
Sbjct: 252 QVYNVAWGFNGLIASVGADGVLAVYEEVDGE 282

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 19/222 (8%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN---TQTPM--FKCTGHKNWVLCIAWSAD 161
           H E V +V  S   R + +G G   V++WD++    ++P+    C    N++       D
Sbjct: 50  HGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 162 GKHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L+ G +A  L  WD     P     L+        ++  P       +   S   DG
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDG 163
Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKG 279
           +  +WD+  +  V    GHT   +C+    DG  ++TG  D T++ W+  +G+ +++   
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--- 220
Query: 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
             H   S   S  Y   TG +   G + S+ E +     ++Y
Sbjct: 221 --HDFTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKY 259

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 36/215 (16%)
Query: 83  SIVYQPQAVFRI-------------RPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGD 129
           S+ ++P   FRI              P  +  +T   HT+ V SV ++PDG   AS  GD
Sbjct: 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211
Query: 130 TTVRLWD--LNTQTPMF-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
            T+ L++    T+T +F     K   H   V  + WS DG  + S S    ++ W+  T 
Sbjct: 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271
Query: 183 K-----PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS 237
           K     P G  +   +    GI W         +  VS S +G     +  L        
Sbjct: 272 KVEKTIPVGTRIEDQQ---LGIIWTK-------QALVSISANGFINFVNPELGSIDQVRY 321
Query: 238 GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG 271
           GH  A+T +    DG  +++   +  I  W+ + G
Sbjct: 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 35/139 (25%)
Query: 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383
            K + P R++SGSDD T+ ++E    K  K+    H + V+ V ++PDG   AS   D +
Sbjct: 155 FKPSRPFRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYNPDGSLFASTGGDGT 213
Query: 384 IKLWNGTTGKFVAVFR-------GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436
           I L+NG  G    VF         H G V+ +                           +
Sbjct: 214 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL---------------------------T 246
Query: 437 WSADSRLLLSGSKDSTLKV 455
           WS D   + S S D T+K+
Sbjct: 247 WSPDGTKIASASADKTIKI 265

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 35/247 (14%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKC-------------TGHKN 151
           H   ++SV ++ DG  + S   +    LW++ + T M  F+              +G  +
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207
Query: 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
             + + W  D K ++ G K G +  +      P+G  L GH   I+      +  N   +
Sbjct: 208 LGVDVEWVDDDKFVIPGPK-GAIFVYQITEKTPTG-KLIGHHGPIS-----VLEFNDTNK 260
Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG 271
             +SAS DG  RIW         C  GH+ ++    W GD  + + S D ++++W   Q 
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN 320
Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
            L+           +L++     +  G     G++Y+         +  Y+  K N+  R
Sbjct: 321 TLL-----------ALSIVDGVPIFAGRISQDGQKYAVA--FMDGQVNVYDLKKLNSKSR 367
Query: 332 LVSGSDD 338
            + G+ D
Sbjct: 368 SLYGNRD 374

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 25/188 (13%)
Query: 100 CSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDL----------------NTQTP 142
           CS  + GH + +L+V++SP     LA+ S D+ V+LWD+                 +Q  
Sbjct: 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE 202
               T H   V  + +++DG HL++      ++ W+   G+   N L  + K +   S +
Sbjct: 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE---NTLVNYGK-VCNNSKK 293
Query: 203 PVHLNAPC---RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
            +     C     FV         ++ V   + +  L GH   V C  +  +   +Y+GS
Sbjct: 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS 353
Query: 259 QDCTIKVW 266
           +DC I  W
Sbjct: 354 RDCNILAW 361

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
            H E +        G++LA+ S D T++++++  +T       TGH+  V  + W+    
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L S S  G++  W  + G+ S   +   H   +  + W P H   P    + AS DG
Sbjct: 67  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWG-----GDGV---------IYTGSQDCTIK 264
              + +         I +  H + V    W       DG            TG  D  +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
           +W+         L   L+GH  WV  +A S    LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
            H E +        G++LA+ S D T++++++  +T       TGH+  V  + W+    
Sbjct: 9   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L S S  G++  W  + G+ S   +   H   +  + W P H   P    + AS DG
Sbjct: 69  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 125
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWG-----GDGV---------IYTGSQDCTIK 264
              + +         I +  H + V    W       DG            TG  D  +K
Sbjct: 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 185
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
           +W+         L   L+GH  WV  +A S    LR+
Sbjct: 186 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 93  RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
           R    ++ S T+  HT  V  ++F+P     LA+GS D TV LWDL N +  +     HK
Sbjct: 262 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 321
Query: 151 NWVLCIAWSADGK------------HLVSGSKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
           + +  + WS   +            H+   SK GE Q   D + G P    +  GH   I
Sbjct: 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
           +  SW P   N P     S S+D   ++W ++
Sbjct: 382 SDFSWNP---NEPW-IICSVSEDNIMQVWQMA 409

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 93  RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
           R    ++ S T+  HT  V  ++F+P     LA+GS D TV LWDL N +  +     HK
Sbjct: 264 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 323
Query: 151 NWVLCIAWSADGK------------HLVSGSKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
           + +  + WS   +            H+   SK GE Q   D + G P    +  GH   I
Sbjct: 324 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
           +  SW P   N P     S S+D   ++W ++
Sbjct: 384 SDFSWNP---NEPW-IICSVSEDNIMQVWQMA 411

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 13/219 (5%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV 166
           H + V +++   DG Q  SG  D +V++WDL+ +  +     H + V C+A +  GK  +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA-ACPGKDTI 196
Query: 167 --SGSKAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
             S  + G +  WD +  KP+            T ++W P   +     F    + G+  
Sbjct: 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT----FACGDETGNVS 252
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
           + ++         + H+  +T + +       + + S+DCT+ V +    ++ R+L  H 
Sbjct: 253 LVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS-HR 311
Query: 282 HWVNSLALS--TEYALRTGAFDHTGKQYSSPEEMKKAAL 318
            +V  +A S        T  +DH    +  P E +   L
Sbjct: 312 DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENL 350

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 93  RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
           R    ++ S T+  HT  V  ++F+P     LA+GS D TV LWDL N +  +     HK
Sbjct: 266 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 325
Query: 151 NWVLCIAWSADGK------------HLVSGSKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
           + +  + WS   +            H+   SK GE Q   D + G P    +  GH   I
Sbjct: 326 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
           +  SW P   N P     S S+D   ++W ++
Sbjct: 386 SDFSWNP---NEPW-IICSVSEDNIMQVWQMA 413

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 84/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
            H E +        G+++A+ S D T++++++  +T       TGH+  V  + W+    
Sbjct: 7   AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L S S  G++  W  + G+ S   +   H   +  + W P H   P    + AS DG
Sbjct: 67  GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPM--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWG-----GDGV---------IYTGSQDCTIK 264
              + +         I +  H + V    W       DG            TG  D  +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
           +W+         L   L+GH  WV  +A S    LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
            H E +        G++LA+ S D T++++++  +T       TGH+  V  + W+    
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L S S  G++  W  + G+ S   +   H   +  + W P H   P    + AS DG
Sbjct: 67  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWG-----GDGV---------IYTGSQDCTIK 264
              + +         I +  H + V    W       DG            TG  D  +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
           +W+         L   L+GH  WV  +A S    LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 20/152 (13%)
Query: 93  RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
           R    ++ S ++  HT  V  ++F+P     LA+GS D TV LWDL N +  +     HK
Sbjct: 258 RSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 317
Query: 151 NWVLCIAWSADGKHLVSGSKAG-ELQCWD---------PQTGKPSGNPL----SGHKKWI 196
           + +  + WS   + +++ S     L  WD         P+  +     L     GH   I
Sbjct: 318 DEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKI 377
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
           +  SW P   N P     S S+D   ++W ++
Sbjct: 378 SDFSWNP---NEPW-VICSVSEDNIMQVWQMA 405

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 23/144 (15%)
Query: 179 PQTGKPSG--NP---LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS----- 228
           P    PSG  NP   L GH+K   G+SW P +L+      +SAS D    +WD+S     
Sbjct: 158 PSKPDPSGECNPDLRLRGHQKEGYGLSWNP-NLSG---HLLSASDDHTICLWDISAVPKE 213
Query: 229 --LRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWET---TQGKLIRELKGHG 281
             +       +GHT  V  V W    + +  + + D  + +W+T      K    +  H 
Sbjct: 214 GKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHT 273
Query: 282 HWVNSLALS--TEYALRTGAFDHT 303
             VN L+ +  +E+ L TG+ D T
Sbjct: 274 AEVNCLSFNPYSEFILATGSADKT 297

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 93  RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
           R    ++ S  +  HT  V  ++F+P     LA+GS D TV LWDL N +  +     HK
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 319
Query: 151 NWVLCIAWSADGKHLVSG------------SKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
           + +  + WS   + +++             SK GE Q   D + G P    +  GH   I
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
           +  SW P   N P     S S+D   +IW ++
Sbjct: 380 SDFSWNP---NEPW-VICSVSEDNIMQIWQMA 407

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 93  RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
           R    ++ S  +  HT  V  ++F+P     LA+GS D TV LWDL N +  +     HK
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 319
Query: 151 NWVLCIAWSADGKHLVSG------------SKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
           + +  + WS   + +++             SK GE Q   D + G P    +  GH   I
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIW 225
           +  SW P   N P     S S+D   +IW
Sbjct: 380 SDFSWNP---NEPW-VICSVSEDNIXQIW 404

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
            H E +        G++ A+ S D T++++++  +T       TGH+  V  + W+    
Sbjct: 7   AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L S S  G++  W  + G+ S   +   H   +  + W P H   P    + AS DG
Sbjct: 67  GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPX--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWG-----GDGV---------IYTGSQDCTIK 264
              + +         I +  H + V    W       DG            TG  D  +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
           +W+         L   L+GH  WV  +A S    LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 91/250 (36%), Gaps = 51/250 (20%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWET 268
           RRF+  + +GD ++ D +          H   +T +K+   G+ +I + SQD  +K+W  
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSV 168
Query: 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
             G   R L GH   V  +A+                            ++R        
Sbjct: 169 KDGSNPRTLIGHRATVTDIAI----------------------------IDR-------- 192
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKT---RMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
              ++S S D T+ LWE        T   +   H  + +   F    + +   S  K   
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252
Query: 386 LWNGTTGKFVAVFRGHVGPVYQIR--FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443
           L  GT GK+V    GHV  V  +   F      + PS F C      C SL     ++  
Sbjct: 253 LEFGTYGKYVIA--GHVSGVITVHNVFSKEQTIQLPSKFTC-----SCNSLTVDGNNANY 305
Query: 444 LLSGSKDSTL 453
           + +G ++  L
Sbjct: 306 IYAGYENGML 315

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 91/250 (36%), Gaps = 51/250 (20%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWET 268
           RRF+  + +GD ++ D +          H   +T +K+   G+ +I + SQD  +K+W  
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSV 165
Query: 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
             G   R L GH   V  +A+                            ++R        
Sbjct: 166 KDGSNPRTLIGHRATVTDIAI----------------------------IDR-------- 189
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKT---RMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
              ++S S D T+ LWE        T   +   H  + +   F    + +   S  K   
Sbjct: 190 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 249
Query: 386 LWNGTTGKFVAVFRGHVGPVYQIR--FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443
           L  GT GK+V    GHV  V  +   F      + PS F C      C SL     ++  
Sbjct: 250 LEFGTYGKYVIA--GHVSGVITVHNVFSKEQTIQLPSKFTC-----SCNSLTVDGNNANY 302
Query: 444 LLSGSKDSTL 453
           + +G ++  L
Sbjct: 303 IYAGYENGML 312

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 25/204 (12%)
Query: 102 ATIAGHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLN--TQTPMF-------KCTGHKN 151
           A  + H+ +V +V F+      LASG  +  + +WD+N  T++P         +     +
Sbjct: 107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166
Query: 152 WVLCIAWSADGKHLVSGSKAGEL-QCWDPQTGKPS-----GNPLSGHKKWITGISWEPVH 205
            V+ +AW+    H+ + + +      WD +  K        +P SG K+ ++ + W P +
Sbjct: 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226
Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICL----SGHTLAVTCVKW--GGDGVIYTGSQ 259
                R   +   D D  I    LR     L     GH   +  + W    + ++ +  +
Sbjct: 227 ---STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283
Query: 260 DCTIKVWETTQGKLIRELKGHGHW 283
           D T+ +W     + + +    G+W
Sbjct: 284 DNTVLLWNPESAEQLSQFPARGNW 307

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 36/191 (18%)
Query: 140 QTPMFKC-----TGHK--NWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGK------PS 185
           Q P FK      T HK  ++V  + +S D G+ +++     ++ C+D ++G+        
Sbjct: 189 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 248
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-------ICLSG 238
             P+ G    I  +SW         ++F +   D   R+WDV+  KCV         L  
Sbjct: 249 QEPVQGG---IFALSW------LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299
Query: 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
             + V      G+G I + S D T+  +E    ++++ + GH   + +L ++    L +G
Sbjct: 300 QQVGVVAT---GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN---PLISG 353
Query: 299 AFDHTGKQYSS 309
           ++D    ++SS
Sbjct: 354 SYDGRIMEWSS 364

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 97  VNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWD-------LNTQTPMFKCTG 148
           V++    + GHT  VL +A+ P +   +ASGS D TV +W+       L  + P+    G
Sbjct: 70  VDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129
Query: 149 HKNWVLCIAWSADGKH-LVSGSKAGELQCWDPQTG 182
           H   V  +AW    ++ L+S      +  WD  TG
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTG 164

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 231 KCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKLIRELK 278
           K V  + GHT  V  + W    D VI +GS+DCT+ VWE   G L+  L+
Sbjct: 72  KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR 121

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 18/210 (8%)
Query: 212 RFVSASKDGDARIW--DVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK---VW 266
           +  S S+DG  R+W  D      V+      L   C     + +++ G +D  I    ++
Sbjct: 31  KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLF-GGKDTXINGVPLF 89
Query: 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN---- 322
            T+    +  L GH   V SL+      + +G++D T K +   E      L+ +N    
Sbjct: 90  ATSGEDPLYTLIGHQGNVCSLSFQDGVVI-SGSWDKTAKVW--KEGSLVYNLQAHNASVW 146
Query: 323 --KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
             K+   +  + ++ S D T+ LW+    K  KT    H  +V H+    DG ++ S S 
Sbjct: 147 DAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSN 203
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410
           D  IKL +  TG  +  + GH   VY I+ 
Sbjct: 204 DGLIKLVDXHTGDVLRTYEGHESFVYCIKL 233

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 36/183 (19%)
Query: 140 QTPMFKC-----TGHK--NWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGK------PS 185
           Q P FK      T HK  ++V  + +S D G+ +++     ++ C+D ++G+        
Sbjct: 189 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 248
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-------ICLSG 238
             P+ G    I  +SW         ++F +   D   R+WDV+  KCV         L  
Sbjct: 249 QEPVQGG---IFALSW------LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299
Query: 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
             + V      G+G I + S D T+  +E    ++++ + GH   + +L ++    L +G
Sbjct: 300 QQVGVVAT---GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN---PLISG 353
Query: 299 AFD 301
           ++D
Sbjct: 354 SYD 356

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	456
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.85
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.83
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.81
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.77
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.75
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.75
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.75
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.74
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.73
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.73
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.72
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.72
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.69
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.68
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.67
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.65
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.65
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.65
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.65
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.65
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.63
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.62
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.61
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.59
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.58
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.57
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.56
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.55
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.55
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.55
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.54
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.49
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.48
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.48
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.46
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.45
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.44
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.44
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.43
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.43
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.42
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.4
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.37
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.36
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.36
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.35
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.34
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.33
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.3
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.3
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.29
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.26
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.21
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.18
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.18
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.11
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.08
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.07
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.05
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.02
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.02
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.0
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.98
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.95
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.94
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.93
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.92
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.9
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.89
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.87
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.87
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.86
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.86
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.85
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.81
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.81
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.79
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.79
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.78
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.77
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.74
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.73
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.73
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.68
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.68
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.66
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.65
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.64
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.6
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.56
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.55
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.47
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.47
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.46
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.43
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.33
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.32
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.26
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.25
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.23
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.21
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.21
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.12
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.11
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.06
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.06
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.05
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.05
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.03
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.97
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.97
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.95
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.94
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.92
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.89
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.85
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.84
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.77
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.76
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.69
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.67
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.65
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.62
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.61
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.6
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.53
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.52
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.48
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.43
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.42
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.35
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.32
3ott_A	758	Two-component system sensor histidine kinase; beta	97.19
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.19
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.15
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.1
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.03
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.03
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.99
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.97
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.95
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.94
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.93
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.93
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.91
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.91
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.8
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.75
3ott_A	758	Two-component system sensor histidine kinase; beta	96.66
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.49
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.26
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.1
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.01
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.93
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.92
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.82
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.68
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.64
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.54
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.49
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.47
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.45
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.23
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.98
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.54
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.21
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.14
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	90.06
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.77
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.97
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	86.03
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	85.37
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	85.07
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.12
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	81.03

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-51  Score=380.46  Aligned_cols=309  Identities=27%  Similarity=0.417  Sum_probs=275.9

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  177 (456)
                      ......+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++|
T Consensus        98 ~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw  177 (410)
T 1vyh_C           98 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW  177 (410)
T ss_dssp             SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             CCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            34467789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEE
Q 012799          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT  256 (456)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~  256 (456)
                      |+.+++... .+.+|...|.+++|+|     +++++++|+.|+.|++||++++.++..+.+|...|.++.+++++ .+++
T Consensus       178 d~~~~~~~~-~~~~h~~~V~~v~~~p-----~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s  251 (410)
T 1vyh_C          178 DFQGFECIR-TMHGHDHNVSSVSIMP-----NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS  251 (410)
T ss_dssp             ETTSSCEEE-CCCCCSSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eCCCCceeE-EEcCCCCCEEEEEEeC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence            999887665 5788999999999999     88999999999999999999999999999999999999999999 8999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe
Q 012799          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (456)
Q Consensus       257 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (456)
                      |+.||.|++||+++++....+..|...|.+++|+|+..+...........                ......+.++++|+
T Consensus       252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~g~~l~sgs  315 (410)
T 1vyh_C          252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET----------------KKSGKPGPFLLSGS  315 (410)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----------------------CCEEEEEE
T ss_pred             EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccc----------------cccCCCCCEEEEEe
Confidence            99999999999999999999999999999999999754322111110000                00112367899999


Q ss_pred             CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeee
Q 012799          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF  416 (456)
Q Consensus       337 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  416 (456)
                      .|+.|++||++.+. ....+.+|...|++++|+|+|++|++|+.||.|++||+.+++++..+.+|...|+++        
T Consensus       316 ~D~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l--------  386 (410)
T 1vyh_C          316 RDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL--------  386 (410)
T ss_dssp             TTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE--------
T ss_pred             CCCeEEEEECCCCc-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE--------
Confidence            99999999987654 556678899999999999999999999999999999999999999999999999999        


Q ss_pred             cCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                         +|+|++++|++|+.||+|+||
T Consensus       387 -------------------~~~~~~~~l~sgs~D~~i~vW  407 (410)
T 1vyh_C          387 -------------------DFHKTAPYVVTGSVDQTVKVW  407 (410)
T ss_dssp             -------------------EECSSSSCEEEEETTSEEEEE
T ss_pred             -------------------EEcCCCCEEEEEeCCCcEEEE
Confidence                               899999999999999999999

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.1e-50  Score=365.20  Aligned_cols=289  Identities=22%  Similarity=0.373  Sum_probs=263.2

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  178 (456)
                      +...+|.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++|+
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~  125 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC---ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799          179 PQTGKP---SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (456)
Q Consensus       179 ~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l  254 (456)
                      +.++..   ....+.+|...|.++.|.+     ++ .+++++.|+.|++||+++++.+..+.+|...|.+++|+|++ .+
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  199 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLD-----DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEE-----TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECC-----CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE
Confidence            987642   2234678999999999987     44 58999999999999999999999999999999999999999 89


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      ++|+.||.|++||+++++....+.+|...|.+++|+|+                                    +.++++
T Consensus       200 ~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~------------------------------------~~~l~s  243 (340)
T 1got_B          200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN------------------------------------GNAFAT  243 (340)
T ss_dssp             EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT------------------------------------SSEEEE
T ss_pred             EEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCC------------------------------------CCEEEE
Confidence            99999999999999999999999999999999999998                                    567999


Q ss_pred             EeCCCcEEEEecCCCCCCccc-cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeee
Q 012799          335 GSDDFTMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI  413 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  413 (456)
                      |+.|+.|++||++........ ...+...|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|.++|.++     
T Consensus       244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~-----  318 (340)
T 1got_B          244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL-----  318 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE-----
T ss_pred             EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEE-----
Confidence            999999999998765432221 12334579999999999999999999999999999999999999999999999     


Q ss_pred             eeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                            +|+|+|++|++|+.||+|+||
T Consensus       319 ----------------------~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          319 ----------------------GVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             ----------------------EECTTSSCEEEEETTSCEEEE
T ss_pred             ----------------------EEcCCCCEEEEEcCCccEEec
Confidence                                  899999999999999999999

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.4e-50  Score=359.38  Aligned_cols=286  Identities=23%  Similarity=0.387  Sum_probs=262.7

Q ss_pred             cccccCCcccEEEEEECCC----CCeEEEEECCCcEEEEeCCCCcc--eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 012799          101 SATIAGHTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~----~~~l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  174 (456)
                      .+.+++|.+.|++++|+|+    +++|++|+.|++|+||++.+++.  ...+.+|...|.+++|++++.++++++.|++|
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i  104 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI  104 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            4567899999999999985    67999999999999999977653  44678999999999999999999999999999


Q ss_pred             EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-e
Q 012799          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-V  253 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~  253 (456)
                      ++||+.+++... .+..+...+.+++|+|     ++++|++++.||.|++||+++++....+..+...|.+++|+|++ .
T Consensus       105 ~lWd~~~~~~~~-~~~~~~~~~~~~~~sp-----dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  178 (321)
T 3ow8_A          105 RLWDLENGKQIK-SIDAGPVDAWTLAFSP-----DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY  178 (321)
T ss_dssp             EEEETTTTEEEE-EEECCTTCCCCEEECT-----TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred             EEEECCCCCEEE-EEeCCCccEEEEEECC-----CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence            999999987765 4567788899999999     99999999999999999999999999999999999999999999 9


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE
Q 012799          254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (456)
Q Consensus       254 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (456)
                      |++++.||.|++||+++++.+..+.+|..+|.+++|+|+                                    +.+|+
T Consensus       179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd------------------------------------~~~l~  222 (321)
T 3ow8_A          179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD------------------------------------SQLLV  222 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTT------------------------------------SCEEE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCC------------------------------------CCEEE
Confidence            999999999999999999999999999999999999998                                    56699


Q ss_pred             EEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeee
Q 012799          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI  413 (456)
Q Consensus       334 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  413 (456)
                      +++.|+.|++||++.. .....+.+|...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.+.|.++     
T Consensus       223 s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v-----  296 (321)
T 3ow8_A          223 TASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV-----  296 (321)
T ss_dssp             EECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE-----
T ss_pred             EEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE-----
Confidence            9999999999997754 3556678999999999999999999999999999999999999999999999999999     


Q ss_pred             eeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                            +|+|+|++|++++.||+|+||
T Consensus       297 ----------------------~~s~~g~~l~s~~~d~~i~vw  317 (321)
T 3ow8_A          297 ----------------------KYNGNGSKIVSVGDDQEIHIY  317 (321)
T ss_dssp             ----------------------EECTTSSEEEEEETTCCEEEE
T ss_pred             ----------------------EECCCCCEEEEEeCCCeEEEE
Confidence                                  899999999999999999999

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3e-49  Score=359.21  Aligned_cols=288  Identities=25%  Similarity=0.396  Sum_probs=261.7

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      ...+|.+|.+.|++++|+|++++||+|+.||+|++||..+++....+..|...|.+++|+|++.+|++|+.|+.+++|++
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCC-----ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC--CC
Q 012799          180 QTGKP-----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG--DG  252 (456)
Q Consensus       180 ~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~  252 (456)
                      .....     ....+..|...|.++.|+|     ++..+++++.|++|++||+++++++..+.+|...|.+++++|  ++
T Consensus       136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g  210 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVAMHTNYLSACSFTN-----SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG  210 (354)
T ss_dssp             CCCTTCCSGGGCEEEEECSSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC
T ss_pred             eccccccccccceeeeccCCcEEEEEEeC-----CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC
Confidence            75421     1224567999999999999     889999999999999999999999999999999999999987  44


Q ss_pred             -eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799          253 -VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (456)
Q Consensus       253 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (456)
                       .|++|+.||.|++||+++++.+..+..|...|.+++|+|+                                    +.+
T Consensus       211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~------------------------------------~~~  254 (354)
T 2pbi_B          211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS------------------------------------GDA  254 (354)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT------------------------------------SSE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCC------------------------------------CCE
Confidence             8999999999999999999999999999999999999998                                    567


Q ss_pred             EEEEeCCCcEEEEecCCCCCCccccc--cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEE
Q 012799          332 LVSGSDDFTMFLWEPAVSKQPKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR  409 (456)
Q Consensus       332 l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~  409 (456)
                      +++++.|+.|++||++..... ..+.  .+...+.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|+++ 
T Consensus       255 l~s~s~D~~v~lwd~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l-  332 (354)
T 2pbi_B          255 FASGSDDATCRLYDLRADREV-AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL-  332 (354)
T ss_dssp             EEEEETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE-
T ss_pred             EEEEeCCCeEEEEECCCCcEE-EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEE-
Confidence            999999999999998765432 2222  234578999999999999999999999999999999999999999999999 


Q ss_pred             eeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                                +|+|||++|++|+.||+|+||
T Consensus       333 --------------------------~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          333 --------------------------RVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             --------------------------EECTTSSCEEEEETTSEEEEE
T ss_pred             --------------------------EECCCCCEEEEEcCCCCEEec
Confidence                                      899999999999999999999

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.7e-48  Score=346.84  Aligned_cols=288  Identities=22%  Similarity=0.313  Sum_probs=257.8

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      ..++|.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|..+|.+++|+|++++|++|+.|+.|++||+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCC-CC-eEEE
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGG-DG-VIYT  256 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~-~l~~  256 (456)
                      ++++... .+.+|...|.+++|+|     ++.++++|+.|++|++||++++ .....+.+|...|.+++|+| ++ .|++
T Consensus        85 ~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s  158 (304)
T 2ynn_A           85 NTGEKVV-DFEAHPDYIRSIAVHP-----TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS  158 (304)
T ss_dssp             TTCCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred             CCCcEEE-EEeCCCCcEEEEEEcC-----CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence            9988765 5788999999999999     8899999999999999999887 56677889999999999999 44 8999


Q ss_pred             EeCCCcEEEEECCCCeEEEEee-cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799          257 GSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (456)
Q Consensus       257 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (456)
                      |+.||+|++||++++.....+. .+...+..+.+.|..                                  ++.+++++
T Consensus       159 gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------------------------~~~~l~s~  204 (304)
T 2ynn_A          159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP----------------------------------DKPYMITA  204 (304)
T ss_dssp             EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCST----------------------------------TCCEEEEE
T ss_pred             EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcC----------------------------------CCCEEEEE
Confidence            9999999999998877655554 455778888887641                                  25679999


Q ss_pred             eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeee
Q 012799          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC  415 (456)
Q Consensus       336 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~  415 (456)
                      +.|+.|++||++.. .....+.+|...|.+++|+|++++|++|+.||.|++||+.+++++..+..|...++++       
T Consensus       205 s~D~~i~iWd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~-------  276 (304)
T 2ynn_A          205 SDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI-------  276 (304)
T ss_dssp             ETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEE-------
T ss_pred             cCCCeEEEEeCCCC-ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEE-------
Confidence            99999999998764 4566788999999999999999999999999999999999999999999999999999       


Q ss_pred             ecCCCCceeeecccccccceeEecCCC--eEEEeeCCCceEE
Q 012799          416 FRYPSNFYCVVDMSCCMSLYSWSADSR--LLLSGSKDSTLKV  455 (456)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~s~s~Dg~v~i  455 (456)
                                          +|+|+++  ++++|+.||.+.+
T Consensus       277 --------------------~~~~~~~~~~~asg~~~g~~~~  298 (304)
T 2ynn_A          277 --------------------ATHPTGRKNYIASGFDNGFTVL  298 (304)
T ss_dssp             --------------------EECTTCGGGCEEEEETTEEEEE
T ss_pred             --------------------EECCCCCceEEEEecCCceEEE
Confidence                                8899885  6888888876543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.5e-49  Score=382.13  Aligned_cols=348  Identities=20%  Similarity=0.312  Sum_probs=285.6

Q ss_pred             CcccEEEEEEeccce--------------EEEeecccccccccCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCc
Q 012799           77 SVEKVLSIVYQPQAV--------------FRIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQT  141 (456)
Q Consensus        77 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~  141 (456)
                      +..++..+.|+|+..              +.+|..+.+..++.+|.+.|++++|+|++. .|++|+.|++|++||..+++
T Consensus       102 ~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~  181 (611)
T 1nr0_A          102 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK  181 (611)
T ss_dssp             SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred             cCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence            456788899988642              345556677788999999999999999987 59999999999999999888


Q ss_pred             ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccccc------CcccceEEEEecccccCCCCCEEEE
Q 012799          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS------GHKKWITGISWEPVHLNAPCRRFVS  215 (456)
Q Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~l~~  215 (456)
                      ....+.+|...|.+++|+|++++|++++.|++|++||+.+++.......      +|...|.+++|+|     ++++|++
T Consensus       182 ~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~l~s  256 (611)
T 1nr0_A          182 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-----DGTKIAS  256 (611)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-----TSSEEEE
T ss_pred             EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-----CCCEEEE
Confidence            8899999999999999999999999999999999999998876543222      7999999999999     9999999


Q ss_pred             EeCCCcEEEEECCCCeEEE-------------------------------------------EecCcCccEEEEEeCCCC
Q 012799          216 ASKDGDARIWDVSLRKCVI-------------------------------------------CLSGHTLAVTCVKWGGDG  252 (456)
Q Consensus       216 ~~~dg~i~iwd~~~~~~~~-------------------------------------------~~~~~~~~v~~~~~~~~~  252 (456)
                      ++.|++|++||+++++++.                                           .+.+|...|++++|+|++
T Consensus       257 ~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg  336 (611)
T 1nr0_A          257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG  336 (611)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC
Confidence            9999999999998776543                                           335788999999999999


Q ss_pred             -eEEEEeCCCcEEEEECCCCeEEEEe-ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHH---------------
Q 012799          253 -VIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK---------------  315 (456)
Q Consensus       253 -~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  315 (456)
                       .|++++.|++|++||+.+++....+ ..|...+.+++++++..+..+..+...+.+........               
T Consensus       337 ~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~  416 (611)
T 1nr0_A          337 KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG  416 (611)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcE
Confidence             9999999999999999999887766 56888999999998877776665544333221100000               


Q ss_pred             -----------------------H-------HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeE
Q 012799          316 -----------------------A-------ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH  365 (456)
Q Consensus       316 -----------------------~-------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  365 (456)
                                             .       ..........++++++++|+.|+.|++||+...........+|...|++
T Consensus       417 ~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~  496 (611)
T 1nr0_A          417 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS  496 (611)
T ss_dssp             EEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEE
T ss_pred             EEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEE
Confidence                                   0       0000112356789999999999999999986543211122679999999


Q ss_pred             EEECCCCCEEEEEECCCcEEEEeCCC-CeEEEE--EecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC
Q 012799          366 VYFSPDGQWVASASFDKSIKLWNGTT-GKFVAV--FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR  442 (456)
Q Consensus       366 ~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~--~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  442 (456)
                      ++|+|+|++|++++.|+.|++||+.+ ++++..  +.+|...|+++                           +|+|||+
T Consensus       497 v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v---------------------------~fspdg~  549 (611)
T 1nr0_A          497 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV---------------------------SWSPDNV  549 (611)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE---------------------------EECTTSS
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEE---------------------------EECCCCC
Confidence            99999999999999999999999987 666553  34599999999                           9999999


Q ss_pred             eEEEeeCCCceEEC
Q 012799          443 LLLSGSKDSTLKVT  456 (456)
Q Consensus       443 ~l~s~s~Dg~v~iW  456 (456)
                      +|++|+.|++|+||
T Consensus       550 ~lasgs~D~~v~lW  563 (611)
T 1nr0_A          550 RLATGSLDNSVIVW  563 (611)
T ss_dssp             EEEEEETTSCEEEE
T ss_pred             EEEEEECCCcEEEE
Confidence            99999999999999

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.5e-49  Score=360.84  Aligned_cols=289  Identities=24%  Similarity=0.433  Sum_probs=256.8

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      +.++|.+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.+++|++
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC------CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-----cCcCccEEEEEe
Q 012799          180 QTGK------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-----SGHTLAVTCVKW  248 (456)
Q Consensus       180 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~  248 (456)
                      .+..      .....+.+|...+.++.|.|.    ++..|++|+.|++|++||+++++.+..+     .+|...|.++++
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~----~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~  213 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPD----QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI  213 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS----SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred             CCCccccCCccceeeccCCCcceEEEEEecC----CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence            7542      223357789999999999882    3457999999999999999999988877     678999999999


Q ss_pred             CC-CC-eEEEEeCCCcEEEEECC-CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhcc
Q 012799          249 GG-DG-VIYTGSQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (456)
Q Consensus       249 ~~-~~-~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (456)
                      ++ ++ .+++|+.||.|++||++ .++.+..+.+|...|.+++|+|+                                 
T Consensus       214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~---------------------------------  260 (380)
T 3iz6_a          214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD---------------------------------  260 (380)
T ss_dssp             CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT---------------------------------
T ss_pred             ecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC---------------------------------
Confidence            87 55 89999999999999998 45778889999999999999998                                 


Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCCCCCccccc-------cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 012799          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT-------GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (456)
Q Consensus       326 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  398 (456)
                         +.++++|+.|++|++||++.+... ..+.       .+...|++++|+|+|++|++|+.||.|++||+.+++.+..+
T Consensus       261 ---~~~l~s~s~D~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          261 ---GQRFGTGSDDGTCRLFDMRTGHQL-QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             ---SSEEEEECSSSCEEEEETTTTEEE-EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             ---CCeEEEEcCCCeEEEEECCCCcEE-EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence               567999999999999998765432 2222       22335899999999999999999999999999999988877


Q ss_pred             ----ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          399 ----RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       399 ----~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                          .+|.+.|+++                           +|+|||++|++||.||+|+||
T Consensus       337 ~~~~~~h~~~v~~l---------------------------~~s~dg~~l~sgs~D~~i~iW  371 (380)
T 3iz6_a          337 GTLQNSHEGRISCL---------------------------GLSSDGSALCTGSWDKNLKIW  371 (380)
T ss_dssp             CCSCSSCCCCCCEE---------------------------EECSSSSEEEEECTTSCEEEE
T ss_pred             ecccCCCCCceEEE---------------------------EECCCCCEEEEeeCCCCEEEE
Confidence                6899999999                           999999999999999999999

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.5e-47  Score=342.92  Aligned_cols=281  Identities=21%  Similarity=0.272  Sum_probs=239.5

Q ss_pred             cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC-----------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-----------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  173 (456)
                      ..|...|.+++|+|||++|++++ |+++++||...           .........+...|.+++|+|++ .|++|+.||+
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~  104 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA  104 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence            45778899999999999999887 67788886321           11122233467889999999985 6889999999


Q ss_pred             EEEEeCCCCCCccc---cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799          174 LQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (456)
Q Consensus       174 i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  250 (456)
                      |++||+++++....   ...+|...|.+++|+|     ++++|++|+.|+.|++||+++++++..+.+|...|.+++|++
T Consensus       105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-----dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~  179 (344)
T 4gqb_B          105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLS-----SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP  179 (344)
T ss_dssp             EEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred             EEEEeccCCCceeEeeccccCCCCCEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence            99999999876532   2458999999999999     999999999999999999999999999999999999999999


Q ss_pred             CC--eEEEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799          251 DG--VIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (456)
Q Consensus       251 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (456)
                      ++  .+++++.||+|++||+++++....+.  .+...+.+++++|+                                  
T Consensus       180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~----------------------------------  225 (344)
T 4gqb_B          180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ----------------------------------  225 (344)
T ss_dssp             SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS----------------------------------
T ss_pred             CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC----------------------------------
Confidence            87  78899999999999999999888774  35567899999986                                  


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC-CEEEEEECCCcEEEEeCCCCeEEEEEecccccE
Q 012799          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV  405 (456)
Q Consensus       327 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  405 (456)
                       ++.++++|+.||.|++||++..+ .+..+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++++ .+.+|.+.|
T Consensus       226 -~~~~l~sg~~dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V  302 (344)
T 4gqb_B          226 -QSEVFVFGDENGTVSLVDTKSTS-CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFV  302 (344)
T ss_dssp             -CTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCE
T ss_pred             -CCcceEEeccCCcEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCE
Confidence             25678999999999999987654 556688999999999999998 57999999999999999998765 578999999


Q ss_pred             EEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEeeCCCceEEC
Q 012799          406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVT  456 (456)
Q Consensus       406 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s~Dg~v~iW  456 (456)
                      +++                           +|+|+++ +|++||.||+|++|
T Consensus       303 ~~v---------------------------~~sp~~~~llas~s~D~~v~~w  327 (344)
T 4gqb_B          303 RDA---------------------------TWSPLNHSLLTTVGWDHQVVHH  327 (344)
T ss_dssp             EEE---------------------------EECSSSTTEEEEEETTSCEEEE
T ss_pred             EEE---------------------------EEeCCCCeEEEEEcCCCeEEEE
Confidence            999                           9999987 56799999999998

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.2e-47  Score=344.12  Aligned_cols=289  Identities=25%  Similarity=0.420  Sum_probs=247.5

Q ss_pred             ccccccCCcc-cEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee---EEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799          100 CSATIAGHTE-AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF---KCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (456)
Q Consensus       100 ~~~~l~~h~~-~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  175 (456)
                      +.+++.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++....   ...+|...|.+++|+|++++|++|+.|+.++
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~   86 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC   86 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence            4567889988 99999999999999999999999999998775332   2358999999999999999999999999999


Q ss_pred             EEeCCCCCC-ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC---eEEEEecCcCccEEEEEeCCC
Q 012799          176 CWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHTLAVTCVKWGGD  251 (456)
Q Consensus       176 vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~  251 (456)
                      +|++..+.. ....+.+|...|.+++|+|     ++++|++|+.|+.|++||++.+   .++..+.+|...|.+++|+|+
T Consensus        87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A           87 IWKKNQDDFECVTTLEGHENEVKSVAWAP-----SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             EEEECCC-EEEEEEECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred             EEEccCCCeEEEEEccCCCCCceEEEEeC-----CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence            999987653 2235788999999999999     8999999999999999999765   456678899999999999999


Q ss_pred             C-eEEEEeCCCcEEEEECCCCe--EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799          252 G-VIYTGSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (456)
Q Consensus       252 ~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (456)
                      + .|++++.|+.|++||.++++  ....+.+|...|.+++|+|+                                    
T Consensus       162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~------------------------------------  205 (345)
T 3fm0_A          162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS------------------------------------  205 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT------------------------------------
T ss_pred             CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC------------------------------------
Confidence            9 99999999999999998875  45678889999999999998                                    


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCC--------------ccccc-cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe
Q 012799          329 PERLVSGSDDFTMFLWEPAVSKQP--------------KTRMT-GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (456)
Q Consensus       329 ~~~l~~~~~dg~i~iwd~~~~~~~--------------~~~~~-~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~  393 (456)
                      +++|++++.|++|++||.......              ...+. .|...|.+++|+|++.+|++++.|+.|++|+...+.
T Consensus       206 g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          206 GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             SSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred             CCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence            667999999999999996433211              11122 388899999999999999999999999999986542


Q ss_pred             --------E-EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCC-CeEEEeeCCCceEEC
Q 012799          394 --------F-VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVT  456 (456)
Q Consensus       394 --------~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~s~s~Dg~v~iW  456 (456)
                              . .....+|...|+++                           +|+|++ .+|++||.||+|++|
T Consensus       286 ~~~~~~~~~~~~~~~~h~~~V~~v---------------------------~~~p~~~~~laS~s~Dg~v~~W  331 (345)
T 3fm0_A          286 DPQQPTFSLTAHLHQAHSQDVNCV---------------------------AWNPKEPGLLASCSDDGEVAFW  331 (345)
T ss_dssp             CTTSCCEEEEEEETTSSSSCEEEE---------------------------EECSSSTTEEEEEETTSCEEEE
T ss_pred             CcceeeEEEEeeecccccCcEeEe---------------------------EEeCCCceEEEEcCCCCcEEEE
Confidence                    1 12235789999999                           999998 499999999999999

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.8e-46  Score=334.42  Aligned_cols=291  Identities=31%  Similarity=0.504  Sum_probs=260.7

Q ss_pred             ecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799           96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (456)
Q Consensus        96 ~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  175 (456)
                      |......++.+|.+.|++++|+|++++||+|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|+
T Consensus        11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   90 (312)
T 4ery_A           11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK   90 (312)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence            33445677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (456)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l  254 (456)
                      +||+++++... .+.+|...|.++.|+|     +++++++++.||.|++||+++++.+..+..|..+|.+++|+|++ .+
T Consensus        91 vwd~~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  164 (312)
T 4ery_A           91 IWDVSSGKCLK-TLKGHSNYVFCCNFNP-----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI  164 (312)
T ss_dssp             EEETTTCCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             EEECCCCcEEE-EEcCCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE
Confidence            99999988665 5778999999999999     88999999999999999999999999999999999999999998 89


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEee-cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE
Q 012799          255 YTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (456)
Q Consensus       255 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (456)
                      ++++.||.|++||+++++.+..+. .+...+..++|+|+                                    +++++
T Consensus       165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~l~  208 (312)
T 4ery_A          165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN------------------------------------GKYIL  208 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTT------------------------------------SSEEE
T ss_pred             EEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCC------------------------------------CCEEE
Confidence            999999999999999998887764 45667899999998                                    56799


Q ss_pred             EEeCCCcEEEEecCCCCCCccccccccccE---eEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLV---NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       334 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      +++.|+.|++||++... ....+.+|...+   ......+++.+|++|+.||.|++||+.+++.+..+.+|.+.|.++  
T Consensus       209 ~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~--  285 (312)
T 4ery_A          209 AATLDNTLKLWDYSKGK-CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST--  285 (312)
T ss_dssp             EEETTTEEEEEETTTTE-EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEE--
T ss_pred             EEcCCCeEEEEECCCCc-EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEE--
Confidence            99999999999987654 344455665433   233344688999999999999999999999999999999999999  


Q ss_pred             eeeeeecCCCCceeeecccccccceeEecCCCeEEEee--CCCceEEC
Q 012799          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVT  456 (456)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s--~Dg~v~iW  456 (456)
                                               +|+|++++|++++  .|++|++|
T Consensus       286 -------------------------~~~p~~~~l~s~~~~~d~~i~~W  308 (312)
T 4ery_A          286 -------------------------ACHPTENIIASAALENDKTIKLW  308 (312)
T ss_dssp             -------------------------EECSSSSEEEEEECTTTCCEEEE
T ss_pred             -------------------------eecCcCCceEEEEccCCccEEEe
Confidence                                     8999999999997  69999999

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.3e-47  Score=344.14  Aligned_cols=283  Identities=17%  Similarity=0.236  Sum_probs=239.0

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEEC------CCcEEEEeCCCCcce----eEEecCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799          104 IAGHTEAVLSVAFSPDGRQLASGSG------DTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (456)
Q Consensus       104 l~~h~~~V~~~~~s~~~~~l~~~~~------d~~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  173 (456)
                      ..+|...|++++|+|||++||+|+.      |+.|++|+..++.+.    ....+|...|.+++|+|++. +++++.||+
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~  116 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA  116 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence            3579999999999999999999997      778999998776533    34457899999999999975 556788999


Q ss_pred             EEEEeCCCCCCccc---cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799          174 LQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (456)
Q Consensus       174 i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  250 (456)
                      |++||+.+++....   ...+|...|.+++|+|     ++++|++|+.|+.|++||+++++++..+.+|...|.+++|++
T Consensus       117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~  191 (357)
T 4g56_B          117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-----DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP  191 (357)
T ss_dssp             EEEC--------CCCCEEECCCSSCEEEEEECS-----SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             EEEeeccccceeEEEeeccCCCCCCEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence            99999998865431   2347899999999999     999999999999999999999999999999999999999999


Q ss_pred             CC--eEEEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799          251 DG--VIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (456)
Q Consensus       251 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (456)
                      ++  .+++++.||.|++||+++++....+.  .+...+.+++|+|+.                                 
T Consensus       192 ~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~---------------------------------  238 (357)
T 4g56_B          192 GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEK---------------------------------  238 (357)
T ss_dssp             TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTS---------------------------------
T ss_pred             CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcc---------------------------------
Confidence            76  78999999999999999988776554  466779999999872                                 


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC-CEEEEEECCCcEEEEeCCCCeEEEEEecccccE
Q 012799          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV  405 (456)
Q Consensus       327 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  405 (456)
                        +.++++|+.|+.|++||++... ....+.+|...|++++|+|++ ++|++|+.||+|+|||+++++++..+ +|.+.|
T Consensus       239 --~~~la~g~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V  314 (357)
T 4g56_B          239 --DDTFACGDETGNVSLVNIKNPD-SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFV  314 (357)
T ss_dssp             --TTEEEEEESSSCEEEEESSCGG-GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCE
T ss_pred             --cceEEEeecccceeEEECCCCc-EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCE
Confidence              5568999999999999987654 455678899999999999987 57999999999999999999887665 799999


Q ss_pred             EEEEeeeeeeecCCCCceeeecccccccceeEec-CCCeEEEeeCCCceEEC
Q 012799          406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       406 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~s~s~Dg~v~iW  456 (456)
                      +++                           +|+| |+++|+|||.||+|++|
T Consensus       315 ~~v---------------------------afsP~d~~~l~s~s~Dg~v~iW  339 (357)
T 4g56_B          315 TGV---------------------------AWSPLDHSKFTTVGWDHKVLHH  339 (357)
T ss_dssp             EEE---------------------------EECSSSTTEEEEEETTSCEEEE
T ss_pred             EEE---------------------------EEeCCCCCEEEEEcCCCeEEEE
Confidence            999                           9998 89999999999999999

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.9e-46  Score=335.98  Aligned_cols=283  Identities=27%  Similarity=0.432  Sum_probs=249.3

Q ss_pred             cccccCCcccEEEEEECCCC-CeEEEEECCCcEEEEeCCCC-----cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 012799          101 SATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  174 (456)
                      ..+|.+|.+.|++++|+|++ ++|++|+.|++|++|++...     .++..+.+|...|.+++|+|++++|++|+.|++|
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v   89 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL   89 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence            45789999999999999965 89999999999999998642     3466788999999999999999999999999999


Q ss_pred             EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC---
Q 012799          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD---  251 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---  251 (456)
                      ++||+++++... .+.+|...|.+++|+|     ++.++++|+.|+.|++||++ ++++..+.+|...|.++.+.|.   
T Consensus        90 ~~wd~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           90 RLWDVATGETYQ-RFVGHKSDVMSVDIDK-----KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             EEEETTTTEEEE-EEECCSSCEEEEEECT-----TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC---
T ss_pred             EEEECCCCCeeE-EEccCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC
Confidence            999999988765 5788999999999999     88999999999999999996 5567788899999999999984   


Q ss_pred             ---C-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799          252 ---G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (456)
Q Consensus       252 ---~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (456)
                         + .+++++.|+.|++||+++++....+.+|...|.+++++|+                                   
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~-----------------------------------  207 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD-----------------------------------  207 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTT-----------------------------------
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCC-----------------------------------
Confidence               3 7999999999999999999999999999999999999998                                   


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec-------
Q 012799          328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-------  400 (456)
Q Consensus       328 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------  400 (456)
                       +.+|++++.||.|++||+.... ....+. +...|.+++|+|++.+|++++.+ .+++|++..+..+..+..       
T Consensus       208 -g~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~  283 (319)
T 3frx_A          208 -GTLIASAGKDGEIMLWNLAAKK-AMYTLS-AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSK  283 (319)
T ss_dssp             -SSEEEEEETTCEEEEEETTTTE-EEEEEE-CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCG
T ss_pred             -CCEEEEEeCCCeEEEEECCCCc-EEEEec-CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccccc
Confidence             6679999999999999987654 333343 34679999999999999988755 599999998877776643       


Q ss_pred             -ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          401 -HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       401 -~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                       |...+.++                           +|+|||++|++|+.||.|+||
T Consensus       284 ~~~~~v~~~---------------------------~~spdg~~l~sg~~Dg~i~vW  313 (319)
T 3frx_A          284 AAEPHAVSL---------------------------AWSADGQTLFAGYTDNVIRVW  313 (319)
T ss_dssp             GGCCCEEEE---------------------------EECTTSSEEEEEETTSCEEEE
T ss_pred             CcCcceeEE---------------------------EECCCCCEEEEeecCceEEEE
Confidence             34567777                           999999999999999999999

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.2e-46  Score=335.59  Aligned_cols=284  Identities=25%  Similarity=0.436  Sum_probs=243.2

Q ss_pred             ccccccCCcccEEEEEE-----CC-CCCeEEEEECCCcEEEEeCCCC-------cceeEEecCCCCEEEEEEcCCCCEEE
Q 012799          100 CSATIAGHTEAVLSVAF-----SP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADGKHLV  166 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~-----s~-~~~~l~~~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~  166 (456)
                      +..+|.+|.+.|++++|     ++ ++++||+|+.|++|++||+.+.       .+...+.+|...|.+++|+|++.+++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence            45678999999999999     77 8999999999999999998753       34567889999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec---CcCccE
Q 012799          167 SGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAV  243 (456)
Q Consensus       167 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v  243 (456)
                      +|+.|++|++||+++++... .+.+|...|.+++|+|     +++++++++.|+.|++||+.... .....   .|...|
T Consensus        93 s~s~D~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp-----~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v  165 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYK-RFVGHQSEVYSVAFSP-----DNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWV  165 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEE-EEECCCSCEEEEEECS-----STTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCE
T ss_pred             EEcCCCcEEEEECCCCcEEE-EEcCCCCcEEEEEECC-----CCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCcee
Confidence            99999999999999987665 5778999999999999     89999999999999999998443 33333   688999


Q ss_pred             EEEEeCCCC-----------eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHH
Q 012799          244 TCVKWGGDG-----------VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (456)
Q Consensus       244 ~~~~~~~~~-----------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (456)
                      .+++|+|++           .+++++.||.|++|| ...+....+..|...|.+++|+|+                    
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~--------------------  224 (343)
T 2xzm_R          166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPN--------------------  224 (343)
T ss_dssp             EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTT--------------------
T ss_pred             eeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCC--------------------
Confidence            999999874           799999999999999 456777888899999999999998                    


Q ss_pred             HHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799          313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  392 (456)
                                      +.+|++|+.|+.|++||+.........+ .+...|.+++|+|++++++++ .|+.|++||+.++
T Consensus       225 ----------------g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~  286 (343)
T 2xzm_R          225 ----------------GKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ  286 (343)
T ss_dssp             ----------------SSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred             ----------------CCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence                            6679999999999999985544443333 345569999999999988765 5788999999887


Q ss_pred             eEEE--EEe-----------cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          393 KFVA--VFR-----------GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       393 ~~~~--~~~-----------~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +...  .+.           +|...|.++                           +|+|+|++|++|+.||+|++|
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------~~sp~g~~l~sg~~Dg~v~~w  336 (343)
T 2xzm_R          287 SKAPVCTIEAEPITKAEGQKGKNPQCTSL---------------------------AWNALGKKLFAGFTDGVIRTF  336 (343)
T ss_dssp             CSCSEEECCCCSGGGBTTBCCSCCCEEEE---------------------------EECSSSCCEEEEETTSEEEEE
T ss_pred             CCCceEEeecCcchhhhhhcCCCCceEEE---------------------------EECCCCCeEEEecCCceEEEE
Confidence            6543  333           567778888                           999999999999999999998

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.9e-46  Score=342.75  Aligned_cols=286  Identities=27%  Similarity=0.481  Sum_probs=248.4

Q ss_pred             CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCC------------------CEEEEEEcCCCCEEEE
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN------------------WVLCIAWSADGKHLVS  167 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~s  167 (456)
                      +|.+.|.+++|+|||++||+|+ ++++++|++.+++.+..+..|..                  .|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999986 78999999999988877765532                  4999999999999999


Q ss_pred             EeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEE
Q 012799          168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK  247 (456)
Q Consensus       168 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  247 (456)
                      |+.|+.|++||+.+++... .+.+|...|.+++|+|     ++.+|++++.|+.|++||++++++...+. +...+.+++
T Consensus       141 ~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~p-----~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~  213 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFP-----SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVA  213 (393)
T ss_dssp             EETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred             EcCCCeEEEEECCCCcEEE-EEccCCCCEEEEEEcC-----CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEE
Confidence            9999999999999887654 5788999999999999     88999999999999999999999887775 567799999


Q ss_pred             eCC-CC-eEEEEeCCCcEEEEECCCCeEEEEe-------ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799          248 WGG-DG-VIYTGSQDCTIKVWETTQGKLIREL-------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (456)
Q Consensus       248 ~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (456)
                      ++| ++ .+++|+.||.|++||+++++.+..+       .+|...|.+++|+|+                          
T Consensus       214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--------------------------  267 (393)
T 1erj_A          214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD--------------------------  267 (393)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT--------------------------
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC--------------------------
Confidence            999 66 8999999999999999999887776       568889999999998                          


Q ss_pred             hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC-----------CccccccccccEeEEEECCCCCEEEEEECCCcEEEE
Q 012799          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-----------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (456)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw  387 (456)
                                +.++++|+.|+.|++||++....           ....+.+|...|.+++|+|++++|++|+.||.|++|
T Consensus       268 ----------g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iw  337 (393)
T 1erj_A          268 ----------GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW  337 (393)
T ss_dssp             ----------SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred             ----------CCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence                      56799999999999999875321           233566899999999999999999999999999999


Q ss_pred             eCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          388 NGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       388 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      |..+++.+..+.+|.+.|.++.|...                     ..|+|++++|++|+.||+|+||
T Consensus       338 d~~~~~~~~~l~~h~~~v~~v~~~~~---------------------~~~~p~~~~l~sgs~Dg~i~iW  385 (393)
T 1erj_A          338 DKKSGNPLLMLQGHRNSVISVAVANG---------------------SSLGPEYNVFATGSGDCKARIW  385 (393)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSS---------------------CTTCTTCEEEEEEETTSEEEEE
T ss_pred             ECCCCeEEEEECCCCCCEEEEEecCC---------------------cCcCCCCCEEEEECCCCcEEEC
Confidence            99999999999999999999943100                     0234588999999999999999

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-46  Score=334.74  Aligned_cols=288  Identities=23%  Similarity=0.371  Sum_probs=235.7

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC--cceeEE-ec-CCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKC-TG-HKNWVLCIAWSADGKHLVSGSKAGELQ  175 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~  175 (456)
                      +.++|.+|.++|.+++|+|+  +||+|+.|++|++||+.++  +....+ .+ |...|.+++|+|++++|++|+.|++|+
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~   83 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS   83 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            45678899999999999987  9999999999999999875  334445 34 999999999999999999999999999


Q ss_pred             EEeCCCCC------CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC----CeEEEEecCcCccEEE
Q 012799          176 CWDPQTGK------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----RKCVICLSGHTLAVTC  245 (456)
Q Consensus       176 vwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~  245 (456)
                      +||++...      .....+.+|...|.+++|+|     ++++|++|+.|+.|++||++.    .+++..+.+|...|.+
T Consensus        84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~  158 (330)
T 2hes_X           84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-----DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH  158 (330)
T ss_dssp             EEEC-------CCCEEEEEEC----CEEEEEECT-----TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred             EEEcccCcCccccceeEEEEcCCCCcEEEEEECC-----CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence            99986432      11224678999999999999     899999999999999999943    3567788999999999


Q ss_pred             EEeCCCC-eEEEEeCCCcEEEEECCCC--eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhh
Q 012799          246 VKWGGDG-VIYTGSQDCTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (456)
Q Consensus       246 ~~~~~~~-~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (456)
                      ++|+|++ .|++++.|++|++||..++  +++..+.+|...|.+++|+|+.                             
T Consensus       159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------------------------  209 (330)
T 2hes_X          159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE-----------------------------  209 (330)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSS-----------------------------
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCC-----------------------------
Confidence            9999998 9999999999999999876  6788899999999999999872                             


Q ss_pred             hccCCCCCEEEEEeCCCcEEEEecCCCCC-------Cccccc-cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe-
Q 012799          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQ-------PKTRMT-GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK-  393 (456)
Q Consensus       323 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~-~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~-  393 (456)
                           .+.++++++.|++|++||+.....       ....+. .|...|.+++|++++ +|++++.||.|++||..+++ 
T Consensus       210 -----~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~  283 (330)
T 2hes_X          210 -----GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW  283 (330)
T ss_dssp             -----SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE
T ss_pred             -----CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce
Confidence                 134599999999999999765321       122233 388999999999765 79999999999999998874 


Q ss_pred             -EEEE-Eecccc-cEEEEEeeeeeeecCCCCceeeecccccccceeEec--CCCeEEEeeCCCceEEC
Q 012799          394 -FVAV-FRGHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA--DSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       394 -~~~~-~~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~s~s~Dg~v~iW  456 (456)
                       .+.. +.+|.. .|.++                           +|+|  ++++|++|+.||+|+||
T Consensus       284 ~~~~~~~~~h~~~~v~~v---------------------------~~~~~~~~~~las~s~Dg~v~~W  324 (330)
T 2hes_X          284 KVFAKRALCHGVYEINVV---------------------------KWLELNGKTILATGGDDGIVNFW  324 (330)
T ss_dssp             EEEEEESCTTTTSCEEEE---------------------------EEC-----CCEEEEETTSEEEEE
T ss_pred             EEEeccccccccceEEEE---------------------------EEecCCCceEEEEecCCCcEEEE
Confidence             3333 357877 89999                           8899  78999999999999999

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.6e-45  Score=355.21  Aligned_cols=350  Identities=22%  Similarity=0.261  Sum_probs=273.0

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEEEEEeCC----
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKA----  171 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----  171 (456)
                      +....+|.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++  ....+.+|.+.|.+++|+|++++|++++.+    
T Consensus        49 ~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~  128 (611)
T 1nr0_A           49 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF  128 (611)
T ss_dssp             SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred             cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence            45677889999999999999999999999999999999997543  345778999999999999999999998875    


Q ss_pred             CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCC-EEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799          172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (456)
Q Consensus       172 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  250 (456)
                      +.|++||.  ++... .+.+|...|.+++|+|     ++. .|++|+.|++|++||..++++...+.+|...|.+++|+|
T Consensus       129 ~~v~~wd~--~~~~~-~l~gh~~~v~~v~f~p-----~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp  200 (611)
T 1nr0_A          129 GHVFLFDT--GTSNG-NLTGQARAMNSVDFKP-----SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP  200 (611)
T ss_dssp             EEEEETTT--CCBCB-CCCCCSSCEEEEEECS-----SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT
T ss_pred             eEEEEeeC--CCCcc-eecCCCCCceEEEECC-----CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC
Confidence            47888874  44443 5789999999999999     665 699999999999999999999999999999999999999


Q ss_pred             CC-eEEEEeCCCcEEEEECCCCeEEEEee-------cCCcceEEEEecCcce-eeeccccCCCCccCChHHHHHHHH---
Q 012799          251 DG-VIYTGSQDCTIKVWETTQGKLIRELK-------GHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKAAL---  318 (456)
Q Consensus       251 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---  318 (456)
                      ++ .|++++.|++|++||+.+++.+..+.       +|...|.+++|+|++. +.+++.+...+.|...........   
T Consensus       201 dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~  280 (611)
T 1nr0_A          201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG  280 (611)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence            99 99999999999999999999988884       6999999999999864 445555665555543211000000   


Q ss_pred             ---hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799          319 ---ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       319 ---~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  395 (456)
                         .........++..+++++.|+.+++||..... ....+.+|...|++++|+|+|++|++++.||.|++||+.+++..
T Consensus       281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~-~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~  359 (611)
T 1nr0_A          281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGS-IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN  359 (611)
T ss_dssp             SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC-cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence               00000001145668888888888888865443 44566799999999999999999999999999999999999887


Q ss_pred             EEE-ecccccEEEEEeeeeee------------ecC-------------------------CCC-c--------------
Q 012799          396 AVF-RGHVGPVYQIRFELIYC------------FRY-------------------------PSN-F--------------  422 (456)
Q Consensus       396 ~~~-~~~~~~v~~i~~~~~~~------------~~~-------------------------~~~-~--------------  422 (456)
                      ..+ .+|...|.++.|.....            ...                         +.. .              
T Consensus       360 ~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~  439 (611)
T 1nr0_A          360 RVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH  439 (611)
T ss_dssp             ECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET
T ss_pred             eecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeC
Confidence            665 57888888887742100            000                         000 0              


Q ss_pred             --eeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          423 --YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       423 --~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                        .........+.+++|+|||++|++|+.||+|+||
T Consensus       440 ~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lw  475 (611)
T 1nr0_A          440 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY  475 (611)
T ss_dssp             TEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             CceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEE
Confidence              0000112345678999999999999999999998

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.4e-44  Score=348.73  Aligned_cols=304  Identities=34%  Similarity=0.596  Sum_probs=269.8

Q ss_pred             CcccEEEEEEeccc----------eEEEee-cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE
Q 012799           77 SVEKVLSIVYQPQA----------VFRIRP-VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK  145 (456)
Q Consensus        77 ~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~  145 (456)
                      +...+..+.|.|+.          .+++|. .++....+.+|...|.+++|+|++++|++++.|++|++||.. +..+..
T Consensus       261 ~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~  339 (577)
T 2ymu_A          261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQT  339 (577)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEE
Confidence            45567778887754          233443 345667889999999999999999999999999999999976 455677


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEE
Q 012799          146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW  225 (456)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  225 (456)
                      +.+|...|.+++|+|++++|++++.||.|++||.. ++... .+.+|...|.+++|+|     ++++|++++.|+.|++|
T Consensus       340 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~-~~~~~~~~v~~~~~s~-----dg~~l~~~~~d~~v~~~  412 (577)
T 2ymu_A          340 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ-TLTGHSSSVRGVAFSP-----DGQTIASASDDKTVKLW  412 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEE-EEECCSSCEEEEEECT-----TSSCEEEEETTSEEEEE
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEE-EecCCCCCeEEEEECC-----CCCEEEEEeCCCEEEEE
Confidence            88999999999999999999999999999999964 44433 5678999999999999     99999999999999999


Q ss_pred             ECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCC
Q 012799          226 DVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG  304 (456)
Q Consensus       226 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  304 (456)
                      |. +++.+..+.+|...|++++|+|++ .+++++.|+.|++||. +++.+..+.+|...|.+++|+|+            
T Consensus       413 ~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd------------  478 (577)
T 2ymu_A          413 NR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD------------  478 (577)
T ss_dssp             CT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTT------------
T ss_pred             eC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCC------------
Confidence            95 567788889999999999999999 9999999999999996 56788889999999999999998            


Q ss_pred             CccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcE
Q 012799          305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI  384 (456)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i  384 (456)
                                              +.++++++.|+.|++||. . ......+.+|...|++++|+|+|++|++++.||.|
T Consensus       479 ------------------------~~~las~~~d~~i~iw~~-~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v  532 (577)
T 2ymu_A          479 ------------------------GQTIASASDDKTVKLWNR-N-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV  532 (577)
T ss_dssp             ------------------------SCEEEEEETTSEEEEEET-T-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred             ------------------------CCEEEEEeCCCEEEEEcC-C-CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEE
Confidence                                    566999999999999994 3 34666788999999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          385 KLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       385 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ++||. +++++..+.+|.+.|+++                           +|+|||++|+|++.||+|++|
T Consensus       533 ~lwd~-~~~~~~~~~~h~~~v~~~---------------------------~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          533 KLWNR-NGQLLQTLTGHSSSVWGV---------------------------AFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             EEECT-TSCEEEEEECCSSCEEEE---------------------------EECTTSSCEEEEETTSCEEEE
T ss_pred             EEEeC-CCCEEEEEcCCCCCEEEE---------------------------EEcCCCCEEEEEeCCCEEEEe
Confidence            99995 789999999999999999                           899999999999999999999

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.4e-43  Score=318.43  Aligned_cols=285  Identities=27%  Similarity=0.480  Sum_probs=245.9

Q ss_pred             ccccccCCcccEEEEEECCC-CCeEEEEECCCcEEEEeCCCCc-----ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799          100 CSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  173 (456)
                      +..+|+||.+.|++++|+|+ +++||||+.|++|+|||+.+.+     +...+.+|...|.+++|+|++++|++++.|+.
T Consensus        30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~  109 (340)
T 4aow_A           30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT  109 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence            35679999999999999997 6899999999999999987654     45677899999999999999999999999999


Q ss_pred             EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEE-EEecCcCccEEEEEeCCCC
Q 012799          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-ICLSGHTLAVTCVKWGGDG  252 (456)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~  252 (456)
                      |++|+........ ....+...+....+.+     ++..+++++.|+.+++||....... ....+|...+.+++|++++
T Consensus       110 i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          110 LRLWDLTTGTTTR-RFVGHTKDVLSVAFSS-----DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             EEEEETTTTEEEE-EEECCSSCEEEEEECT-----TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred             ceEEeecccceee-eecCCCCceeEEEEee-----cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence            9999998876554 4556677788888888     8899999999999999999876544 3456789999999998865


Q ss_pred             ---eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799          253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (456)
Q Consensus       253 ---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (456)
                         .+++++.|+.|++||+++++.+..+.+|...|.+++|+|+                                    +
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~------------------------------------~  227 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD------------------------------------G  227 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT------------------------------------S
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCC------------------------------------C
Confidence               6789999999999999999999999999999999999998                                    5


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe---------c
Q 012799          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR---------G  400 (456)
Q Consensus       330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~  400 (456)
                      .+|++|+.|+.|++||++.... ...+. +...|.+++|+|++.++ +++.|+.|++||++++..+..+.         +
T Consensus       228 ~~l~s~s~Dg~i~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  304 (340)
T 4aow_A          228 SLCASGGKDGQAMLWDLNEGKH-LYTLD-GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKA  304 (340)
T ss_dssp             SEEEEEETTCEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------C
T ss_pred             CEEEEEeCCCeEEEEEeccCce-eeeec-CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccC
Confidence            6799999999999999876543 33333 45679999999988755 55579999999999988776654         5


Q ss_pred             ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       401 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      |...|+++                           +|+|||++|++|+.||.|+||
T Consensus       305 h~~~v~~l---------------------------~~s~dg~~l~sgs~Dg~v~iW  333 (340)
T 4aow_A          305 EPPQCTSL---------------------------AWSADGQTLFAGYTDNLVRVW  333 (340)
T ss_dssp             CCCCEEEE---------------------------EECTTSSEEEEEETTSCEEEE
T ss_pred             CCCCEEEE---------------------------EECCCCCEEEEEeCCCEEEEE
Confidence            77788888                           999999999999999999999

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-43  Score=321.53  Aligned_cols=284  Identities=17%  Similarity=0.306  Sum_probs=256.3

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  180 (456)
                      ...|.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC-----CcEEEEECCCCe-----------EEEEecCcCc--c
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLRK-----------CVICLSGHTL--A  242 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~--~  242 (456)
                      +++.... + .+...+.+++|+|     ++.++++++.+     |.|++||+....           ....+..|..  .
T Consensus       105 ~~~~~~~-~-~~~~~v~~~~~~~-----~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B          105 NGQCVAT-W-KSPVPVKRVEFSP-----CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             TCCEEEE-E-ECSSCEEEEEECT-----TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred             CCcEEEE-e-ecCCCeEEEEEcc-----CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence            9887653 2 2788999999999     89999999999     999999987543           2334445555  8


Q ss_pred             EEEEEeCCCC-eEEEEeCCCcEEEEECCC-CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799          243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (456)
Q Consensus       243 v~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (456)
                      +.+++|+|++ .+++++.||.|++||+++ ++.+..+..|...|.+++|+|+                            
T Consensus       178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------------  229 (369)
T 3zwl_B          178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPD----------------------------  229 (369)
T ss_dssp             EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTT----------------------------
T ss_pred             eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCC----------------------------
Confidence            9999999998 899999999999999999 7888999999999999999998                            


Q ss_pred             hhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCC--------------cEEE
Q 012799          321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--------------SIKL  386 (456)
Q Consensus       321 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg--------------~i~i  386 (456)
                              +.++++++.|+.|++||++.... ...+. +...+.+++|+|+++++++++.++              .+++
T Consensus       230 --------~~~l~~~~~d~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  299 (369)
T 3zwl_B          230 --------LTYFITSSRDTNSFLVDVSTLQV-LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARF  299 (369)
T ss_dssp             --------SSEEEEEETTSEEEEEETTTCCE-EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEE
T ss_pred             --------CCEEEEecCCceEEEEECCCCce-eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEE
Confidence                    56699999999999999876543 33333 678899999999999999999998              8999


Q ss_pred             EeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       387 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ||..+++.+..+.+|...|.++                           +|+|++++|++++.||.|+||
T Consensus       300 ~d~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~l~s~~~dg~v~iw  342 (369)
T 3zwl_B          300 YHKIFEEEIGRVQGHFGPLNTV---------------------------AISPQGTSYASGGEDGFIRLH  342 (369)
T ss_dssp             EETTTCCEEEEEECCSSCEEEE---------------------------EECTTSSEEEEEETTSEEEEE
T ss_pred             EecCCCcchhheecccCcEEEE---------------------------EECCCCCEEEEEcCCCeEEEE
Confidence            9999999999999999999999                           999999999999999999998

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.3e-43  Score=324.63  Aligned_cols=271  Identities=27%  Similarity=0.562  Sum_probs=246.6

Q ss_pred             CcccEEEEEEeccc----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee
Q 012799           77 SVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF  144 (456)
Q Consensus        77 ~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~  144 (456)
                      +..++..+.|.|+.          .+++|..  +.+.+++.+|.+.|.+++|+|++++|++|+.|++|++||+.+++.+.
T Consensus       107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~  186 (410)
T 1vyh_C          107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR  186 (410)
T ss_dssp             CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred             cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Confidence            56678889998864          3456653  45778899999999999999999999999999999999999999999


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (456)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i  224 (456)
                      .+.+|...|.+++|+|++++|++|+.|++|++||++++.... .+.+|...|.++.|+|     ++.++++|+.|+.|++
T Consensus       187 ~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~-----~g~~l~s~s~D~~v~v  260 (410)
T 1vyh_C          187 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQ-----DGTLIASCSNDQTVRV  260 (410)
T ss_dssp             CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECT-----TSSEEEEEETTSCEEE
T ss_pred             EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEeCCCccEEEEEECC-----CCCEEEEEcCCCeEEE
Confidence            999999999999999999999999999999999999988765 5778999999999998     8999999999999999


Q ss_pred             EECCCCeEEEEecCcCccEEEEEeCCC--------------------C-eEEEEeCCCcEEEEECCCCeEEEEeecCCcc
Q 012799          225 WDVSLRKCVICLSGHTLAVTCVKWGGD--------------------G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW  283 (456)
Q Consensus       225 wd~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  283 (456)
                      ||+.++++...+.+|...|.+++|+|+                    + .+++|+.||.|++||+++++++..+.+|...
T Consensus       261 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~  340 (410)
T 1vyh_C          261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW  340 (410)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             EECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCc
Confidence            999999999999999999999999985                    4 7999999999999999999999999999999


Q ss_pred             eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccE
Q 012799          284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV  363 (456)
Q Consensus       284 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  363 (456)
                      |.+++|+|+                                    +.++++|+.|+.|++||+... .....+.+|...|
T Consensus       341 v~~v~~~~~------------------------------------g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~~v  383 (410)
T 1vyh_C          341 VRGVLFHSG------------------------------------GKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFV  383 (410)
T ss_dssp             EEEEEECSS------------------------------------SSCEEEEETTTEEEEECCTTS-CCCEEEECCSSCE
T ss_pred             EEEEEEcCC------------------------------------CCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcE
Confidence            999999998                                    566999999999999997654 4556678999999


Q ss_pred             eEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          364 NHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       364 ~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                      ++++|+|++.+|++|+.||.|++|+++
T Consensus       384 ~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          384 TSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999999999999999999999999863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.6e-42  Score=335.51  Aligned_cols=304  Identities=34%  Similarity=0.583  Sum_probs=270.8

Q ss_pred             CcccEEEEEEeccc----------eEEEee-cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE
Q 012799           77 SVEKVLSIVYQPQA----------VFRIRP-VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK  145 (456)
Q Consensus        77 ~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~  145 (456)
                      +...+..+.|.|+.          .+++|. .+++...+.+|...|.+++|+|++++|++++.|+.|++|+.. ++....
T Consensus       220 ~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~  298 (577)
T 2ymu_A          220 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQT  298 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEE
Confidence            45566777777753          234443 345677889999999999999999999999999999999964 677788


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEE
Q 012799          146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW  225 (456)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  225 (456)
                      +.+|...|.+++|+|++++|++++.|+.|++||.......  .+.+|...+.+++|+|     ++.++++++.||.|++|
T Consensus       299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~--~~~~~~~~v~~~~~s~-----~g~~l~~~~~dg~v~~~  371 (577)
T 2ymu_A          299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ--TLTGHSSSVWGVAFSP-----DGQTIASASDDKTVKLW  371 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE--EECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEE
T ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE--EEeCCCCCEEEEEECC-----CCCEEEEEeCCCEEEEE
Confidence            8999999999999999999999999999999998755433  4678999999999999     99999999999999999


Q ss_pred             ECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCC
Q 012799          226 DVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG  304 (456)
Q Consensus       226 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  304 (456)
                      |. +++.+..+.+|...|++++|+|++ .|++++.|+.|++||. +++.+..+..|...|.+++|+|+            
T Consensus       372 ~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d------------  437 (577)
T 2ymu_A          372 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD------------  437 (577)
T ss_dssp             ET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT------------
T ss_pred             cC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCC------------
Confidence            95 567788889999999999999999 8999999999999995 57788899999999999999998            


Q ss_pred             CccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcE
Q 012799          305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI  384 (456)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i  384 (456)
                                              +.++++++.|+.|++||..  ......+.+|...|++++|+|++++|++++.|+.|
T Consensus       438 ------------------------~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i  491 (577)
T 2ymu_A          438 ------------------------DQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV  491 (577)
T ss_dssp             ------------------------SSEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             ------------------------CCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence                                    5669999999999999953  34566778999999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          385 KLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       385 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ++|| .+++++..+.+|...|+++                           +|+|||++|++++.||.|+||
T Consensus       492 ~iw~-~~~~~~~~~~~h~~~v~~l---------------------------~~s~dg~~l~s~~~dg~v~lw  535 (577)
T 2ymu_A          492 KLWN-RNGQLLQTLTGHSSSVRGV---------------------------AFSPDGQTIASASDDKTVKLW  535 (577)
T ss_dssp             EEEE-TTSCEEEEEECCSSCEEEE---------------------------EECTTSSCEEEEETTSEEEEE
T ss_pred             EEEc-CCCCEEEEEeCCCCCEEEE---------------------------EEcCCCCEEEEEECcCEEEEE
Confidence            9999 4789999999999999999                           899999999999999999999

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.3e-42  Score=312.47  Aligned_cols=280  Identities=22%  Similarity=0.394  Sum_probs=250.2

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce---eEEe--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM---FKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (456)
Q Consensus       104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  178 (456)
                      ..+|.+.|++++|+|++++|++++ ||.|++||+.+++..   ..+.  +|...|.+++|+|++++|++++.||.|++||
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  125 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence            347999999999999999999998 999999999876533   3333  7999999999999999999999999999999


Q ss_pred             CCCCCCc-cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEE
Q 012799          179 PQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT  256 (456)
Q Consensus       179 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~  256 (456)
                      +++++.. ...+..|...+.+++|+|     +++++++++.||.|++||+++++.+..+..|...+.+++|+|++ .+++
T Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  200 (337)
T 1gxr_A          126 LAAPTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCcceeeecccCCCceEEEEECC-----CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence            9987632 224667888999999999     88999999999999999999999999999999999999999999 9999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe
Q 012799          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (456)
Q Consensus       257 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (456)
                      ++.||.|++||+++++.+..+. +...+.+++++|+                                    +.++++++
T Consensus       201 ~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~------------------------------------~~~l~~~~  243 (337)
T 1gxr_A          201 GGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPT------------------------------------GEWLAVGM  243 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTT------------------------------------SSEEEEEE
T ss_pred             EecCCcEEEEECCCCceEeeec-CCCceEEEEECCC------------------------------------CCEEEEEc
Confidence            9999999999999999888775 6778999999998                                    56699999


Q ss_pred             CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeee
Q 012799          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF  416 (456)
Q Consensus       337 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  416 (456)
                      .++.|++||+....  ...+..|...|.+++|+|++++|++++.||.|++||+.+++.+... .|...+.++        
T Consensus       244 ~~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~--------  312 (337)
T 1gxr_A          244 ESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSC--------  312 (337)
T ss_dssp             TTSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEE--------
T ss_pred             CCCcEEEEECCCCC--eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEE--------
Confidence            99999999987654  3456789999999999999999999999999999999999888554 478899999        


Q ss_pred             cCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                         +|+|++++|++++.||.|++|
T Consensus       313 -------------------~~s~~~~~l~~~~~dg~i~iw  333 (337)
T 1gxr_A          313 -------------------DISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             -------------------EECTTSCEEEEEETTSCEEEE
T ss_pred             -------------------EECCCCCEEEEecCCCeEEEE
Confidence                               899999999999999999998

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.4e-43  Score=310.92  Aligned_cols=248  Identities=23%  Similarity=0.341  Sum_probs=227.6

Q ss_pred             cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC
Q 012799          141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (456)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg  220 (456)
                      +...++.+|.+.|.+++|+|++++|++++.||.|++||++++.... .+..|...|.+++|+|     +++++++|+.|+
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~s~s~d~   77 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR-SIQVTETPVRAGKFIA-----RKNWIIVGSDDF   77 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEEEG-----GGTEEEEEETTS
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE-EeeccCCcEEEEEEeC-----CCCEEEEECCCC
Confidence            4466788999999999999999999999999999999999887665 5678899999999999     889999999999


Q ss_pred             cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeec
Q 012799          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTG  298 (456)
Q Consensus       221 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~  298 (456)
                      .|++||+.+++++..+.+|...|.+++|+|++ .+++|+.||+|++||++++ .....+.+|...|.+++|+|.      
T Consensus        78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~------  151 (304)
T 2ynn_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK------  151 (304)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT------
T ss_pred             EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC------
Confidence            99999999999999999999999999999999 9999999999999999887 556778899999999999985      


Q ss_pred             cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC--CCCEEE
Q 012799          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVA  376 (456)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~  376 (456)
                                                   ++..+++|+.|+.|++||++..........+|...+..+.|+|  ++++|+
T Consensus       152 -----------------------------~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  202 (304)
T 2ynn_A          152 -----------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI  202 (304)
T ss_dssp             -----------------------------CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE
T ss_pred             -----------------------------CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE
Confidence                                         2567999999999999998777666555567778899999987  778999


Q ss_pred             EEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          377 SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       377 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +|+.||.|++||+++++++..+.+|...|.++                           +|+|++++|++|+.||+|+||
T Consensus       203 s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~---------------------------~~~p~~~~l~s~s~Dg~i~iW  255 (304)
T 2ynn_A          203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFA---------------------------VFHPTLPIIISGSEDGTLKIW  255 (304)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEE---------------------------EECSSSSEEEEEETTSCEEEE
T ss_pred             EEcCCCeEEEEeCCCCccceeeCCCCCCEEEE---------------------------EECCCCCEEEEEcCCCeEEEE
Confidence            99999999999999999999999999999999                           899999999999999999999

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.7e-43  Score=326.21  Aligned_cols=285  Identities=17%  Similarity=0.225  Sum_probs=254.1

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc------ceeEEecCCCCEEEEEEcCC----C---CEEE
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSAD----G---KHLV  166 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~l~  166 (456)
                      ..+.+.+|.+.|++++|+|  ++|++|+.||.|++||+.+++      ....+.+|...|.+++|+|+    +   ++|+
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            3467889999999999999  799999999999999999887      78888999999999999999    9   9999


Q ss_pred             EEeCCCeEEEEeCCCCCC-----ccccccCc-----ccceEEEEec----ccccCCCCCE-EEEEeCCCcEEEEECCC--
Q 012799          167 SGSKAGELQCWDPQTGKP-----SGNPLSGH-----KKWITGISWE----PVHLNAPCRR-FVSASKDGDARIWDVSL--  229 (456)
Q Consensus       167 s~~~dg~i~vwd~~~~~~-----~~~~~~~~-----~~~v~~~~~~----~~~~~~~~~~-l~~~~~dg~i~iwd~~~--  229 (456)
                      +++.||.|++||+.+++.     .. .+..|     ...|.+++|+    |     ++.. |++++.||.|++||+++  
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~  159 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFE-KLDLLDSDMKKHSFWALKWGASNDR-----LLSHRLVATDVKGTTYIWKFHPFA  159 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEE-EECCSCTTGGGSCEEEEEEECCC---------CEEEEEEETTSCEEEEEEESSS
T ss_pred             EEcCCCCEEEEEccCCcccccccce-eecccccccCCCcEEEEEEeeccCC-----CCceEEEEEeCCCcEEEEeCCccc
Confidence            999999999999998875     33 45667     5899999999    7     8899 99999999999999988  


Q ss_pred             ----CeEEE-----Ee-------cCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeec---C---CcceEEE
Q 012799          230 ----RKCVI-----CL-------SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG---H---GHWVNSL  287 (456)
Q Consensus       230 ----~~~~~-----~~-------~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~i~~~  287 (456)
                          ++.+.     .+       ..|...|.+++|+|++.+++++.||.|++||+++++.+..+..   |   ...+.++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i  239 (397)
T 1sq9_A          160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  239 (397)
T ss_dssp             SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             cccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence                55544     55       4588999999999988888899999999999999999999998   8   9999999


Q ss_pred             EecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC---CcEEEEecCCCCCCcccccc------
Q 012799          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD---FTMFLWEPAVSKQPKTRMTG------  358 (456)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~------  358 (456)
                      +|+|+                                    +.++++++.|   +.|++||++... ....+.+      
T Consensus       240 ~~~~~------------------------------------~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~  282 (397)
T 1sq9_A          240 KFSPQ------------------------------------GSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQ  282 (397)
T ss_dssp             EECSS------------------------------------TTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC-----
T ss_pred             EECCC------------------------------------CCEEEEEecCCCCceEEEEECCCCc-ccceeccCccccc
Confidence            99998                                    5669999999   999999987654 4555666      


Q ss_pred             -------ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe------cc---------------cccEEEEEe
Q 012799          359 -------HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR------GH---------------VGPVYQIRF  410 (456)
Q Consensus       359 -------~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~---------------~~~v~~i~~  410 (456)
                             |...|.+++|+|++++|++++.||.|++||+.+++.+..+.      +|               ..+|+++  
T Consensus       283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~--  360 (397)
T 1sq9_A          283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV--  360 (397)
T ss_dssp             ---CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE--
T ss_pred             ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE--
Confidence                   99999999999999999999999999999999999999999      88               8899999  


Q ss_pred             eeeeeecCCCCceeeecccccccceeEecCC----------CeEEEeeCCCceEEC
Q 012799          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADS----------RLLLSGSKDSTLKVT  456 (456)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg----------~~l~s~s~Dg~v~iW  456 (456)
                                               +|+|+|          ++|++|+.||.|+||
T Consensus       361 -------------------------~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw  391 (397)
T 1sq9_A          361 -------------------------KFLKKGWRSGMGADLNESLCCVCLDRSIRWF  391 (397)
T ss_dssp             -------------------------EEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred             -------------------------EeccccccccccccccceEEEecCCCcEEEE
Confidence                                     999998          799999999999999

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8e-43  Score=312.28  Aligned_cols=272  Identities=24%  Similarity=0.405  Sum_probs=243.5

Q ss_pred             cCcccEEEEEEecc--------------ceEEEeecc----cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeC
Q 012799           76 VSVEKVLSIVYQPQ--------------AVFRIRPVN----RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL  137 (456)
Q Consensus        76 ~~~~~~~~~~~~~~--------------~~~~~~~~~----~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~  137 (456)
                      .+.+.+..+.|.|.              ..+++|...    .+...+.+|...|.+++|++++.++++++.|++|++||+
T Consensus        30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~  109 (321)
T 3ow8_A           30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL  109 (321)
T ss_dssp             SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            45667777777552              234555432    234578999999999999999999999999999999999


Q ss_pred             CCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEe
Q 012799          138 NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS  217 (456)
Q Consensus       138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~  217 (456)
                      .+++.+..+..|...+.+++|+|++++|++++.||.|++|++++++... .+..|...+.+++|+|     ++++|++|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~-~~~~~~~~v~~~~~sp-----dg~~lasg~  183 (321)
T 3ow8_A          110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY-SLDTRGKFILSIAYSP-----DGKYLASGA  183 (321)
T ss_dssp             TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE-EEECSSSCEEEEEECT-----TSSEEEEEE
T ss_pred             CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE-EecCCCceEEEEEECC-----CCCEEEEEc
Confidence            9999999999999999999999999999999999999999999887654 4667888999999999     999999999


Q ss_pred             CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceee
Q 012799          218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (456)
Q Consensus       218 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  296 (456)
                      .||.|++||+++++.+..+.+|..+|.+++|+|++ .|++++.||.|++||+++++....+.+|...|.+++|+|+    
T Consensus       184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~----  259 (321)
T 3ow8_A          184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD----  259 (321)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT----
T ss_pred             CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCC----
Confidence            99999999999999999999999999999999999 8999999999999999999999999999999999999998    


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA  376 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  376 (456)
                                                      +.+|++++.|+.|++||+.+. .....+.+|...|.+++|+|++++|+
T Consensus       260 --------------------------------~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~h~~~v~~v~~s~~g~~l~  306 (321)
T 3ow8_A          260 --------------------------------DTHFVSSSSDKSVKVWDVGTR-TCVHTFFDHQDQVWGVKYNGNGSKIV  306 (321)
T ss_dssp             --------------------------------SSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             --------------------------------CCEEEEEeCCCcEEEEeCCCC-EEEEEEcCCCCcEEEEEECCCCCEEE
Confidence                                            566999999999999997654 45566788999999999999999999


Q ss_pred             EEECCCcEEEEeCC
Q 012799          377 SASFDKSIKLWNGT  390 (456)
Q Consensus       377 s~~~dg~i~iwd~~  390 (456)
                      +++.||.|++||..
T Consensus       307 s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          307 SVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEETTCCEEEEECC
T ss_pred             EEeCCCeEEEEeCC
Confidence            99999999999963

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.1e-42  Score=344.66  Aligned_cols=303  Identities=28%  Similarity=0.461  Sum_probs=246.6

Q ss_pred             cccccCCcccEEEEEECCCC-CeEEEEECCCcEEEEeCCCCc-----ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 012799          101 SATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQT-----PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  174 (456)
                      ...|++|.+.|++++|+|++ ++|++|+.|++|++|++.+..     ....+.+|...|.+++|+|++++|++|+.||.|
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            34688999999999999864 799999999999999997643     346788999999999999999999999999999


Q ss_pred             EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCccEEEEEeCCC
Q 012799          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCVKWGGD  251 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~  251 (456)
                      ++||+.++.... .+.+|...|.+++|+|     ++++|++++.|++|++||..........   .+|...|.+++|+|+
T Consensus       455 ~vwd~~~~~~~~-~~~~h~~~v~~~~~s~-----~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          455 RLWDLAAGVSTR-RFVGHTKDVLSVAFSL-----DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             EEEETTTTEEEE-EEECCSSCEEEEEECT-----TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred             EEEECCCCccee-EEeCCCCCEEEEEEeC-----CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence            999999887665 5778999999999999     8999999999999999998765544333   468889999999997


Q ss_pred             C---eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799          252 G---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (456)
Q Consensus       252 ~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (456)
                      +   .+++++.||.|++||+++++....+.+|...|.+++++|+                                    
T Consensus       529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd------------------------------------  572 (694)
T 3dm0_A          529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD------------------------------------  572 (694)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT------------------------------------
T ss_pred             CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCC------------------------------------
Confidence            6   6999999999999999999999999999999999999998                                    


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      +.++++++.||.|++||++..... ..+ .+...|.+++|+|++.+|++++ |+.|++||+++++.+..+..+.......
T Consensus       573 g~~l~sg~~Dg~i~iwd~~~~~~~-~~~-~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~  649 (694)
T 3dm0_A          573 GSLCASGGKDGVVLLWDLAEGKKL-YSL-EANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEK  649 (694)
T ss_dssp             SSEEEEEETTSBCEEEETTTTEEE-ECC-BCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-----
T ss_pred             CCEEEEEeCCCeEEEEECCCCceE-EEe-cCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccc
Confidence            567999999999999998766433 323 3456799999999999888776 5669999999999988876543221000


Q ss_pred             EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ...        ............+..++|+|||++|++|+.||+|+||
T Consensus       650 ~~~--------~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW  689 (694)
T 3dm0_A          650 ADN--------SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW  689 (694)
T ss_dssp             -------------------CCCCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccc--------cccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEE
Confidence            000        0000000011123445999999999999999999999

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-43  Score=328.40  Aligned_cols=323  Identities=14%  Similarity=0.162  Sum_probs=244.8

Q ss_pred             ecccccccc-cCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCC---Cc---ceeEEecCCCCEEEEEEcCCCCEEEE
Q 012799           96 PVNRCSATI-AGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT---QT---PMFKCTGHKNWVLCIAWSADGKHLVS  167 (456)
Q Consensus        96 ~~~~~~~~l-~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~s  167 (456)
                      +.++.+.++ .+|.+.|++++|+| ++++||+|+.||+|++||+.+   +.   ....+ +|...|.+++|+|++++|++
T Consensus        50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s  128 (437)
T 3gre_A           50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV  128 (437)
T ss_dssp             CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence            445566777 89999999999999 999999999999999999876   33   23333 59999999999999999999


Q ss_pred             EeCCCeEEEEeCC---CCCCccccccC------------cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE
Q 012799          168 GSKAGELQCWDPQ---TGKPSGNPLSG------------HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC  232 (456)
Q Consensus       168 ~~~dg~i~vwd~~---~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  232 (456)
                      ++.||.|++||++   +++... ....            +...+.++.+.   ..+++.++++++.||.|++||++++++
T Consensus       129 ~s~dg~i~vwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~d~~i~iwd~~~~~~  204 (437)
T 3gre_A          129 SSKDGQIIVLKVNHYQQESEVK-FLNCECIRKINLKNFGKNEYAVRMRAF---VNEEKSLLVALTNLSRVIIFDIRTLER  204 (437)
T ss_dssp             EETTSEEEEEEEEEEEETTEEE-EEEEEEEEEEEGGGGSSCCCEEEEEEE---ECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred             EeCCCEEEEEEeccccCCceee-ccccceeEEEEccCcccccCceEEEEE---EcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence            9999999999995   444322 1111            33344444422   122788999999999999999999999


Q ss_pred             EEEecC--cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCcceEEEEecCcceeeeccccCCCCccC
Q 012799          233 VICLSG--HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (456)
Q Consensus       233 ~~~~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  308 (456)
                      +..+..  |...|++++|+|++ .|++|+.||.|++||+++++.+..+. .+...|.+++++|..               
T Consensus       205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------  269 (437)
T 3gre_A          205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY---------------  269 (437)
T ss_dssp             EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT---------------
T ss_pred             eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecccc---------------
Confidence            999988  89999999999999 89999999999999999999999886 678899999877651               


Q ss_pred             ChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc-----------------------cccc--ccccE
Q 012799          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT-----------------------RMTG--HQQLV  363 (456)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------------------~~~~--~~~~v  363 (456)
                                       .+++.++++++.||.|++||++.......                       .+.+  |...|
T Consensus       270 -----------------s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v  332 (437)
T 3gre_A          270 -----------------GKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNAL  332 (437)
T ss_dssp             -----------------CTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGG
T ss_pred             -----------------CCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCce
Confidence                             12355799999999999999875542111                       1122  77889


Q ss_pred             eEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccE---EEEEeeeeeeecC-------CCCceeeeccccccc
Q 012799          364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV---YQIRFELIYCFRY-------PSNFYCVVDMSCCMS  433 (456)
Q Consensus       364 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v---~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~  433 (456)
                      ++++|+ ++++|++|+.||.|++||+.+++.+..+.+|....   ....+.....+..       .............|.
T Consensus       333 ~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~  411 (437)
T 3gre_A          333 STISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIIN  411 (437)
T ss_dssp             CCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEE
T ss_pred             EEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccccccee
Confidence            999999 78999999999999999999999988888754321   1111111000000       000000011344566


Q ss_pred             ceeEecC--CCeEEEeeCCCceEEC
Q 012799          434 LYSWSAD--SRLLLSGSKDSTLKVT  456 (456)
Q Consensus       434 ~~~~s~d--g~~l~s~s~Dg~v~iW  456 (456)
                      +++|+++  +.+|++|+.||.|+||
T Consensus       412 ~i~~~~~~~~~~l~s~~~dG~I~iw  436 (437)
T 3gre_A          412 SISTCEVDETPLLVACDNSGLIGIF  436 (437)
T ss_dssp             EEEEEESSSSEEEEEEETTSCEEEE
T ss_pred             eEeeeccCCceEEEEEcCCceEEEe
Confidence            6699988  7899999999999999

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.7e-42  Score=314.67  Aligned_cols=291  Identities=19%  Similarity=0.283  Sum_probs=244.5

Q ss_pred             ccccCCcccEEEEEECCCCCeE-EEEEC---CCcEEEEeCCCCcceeEE-ecCCCCEEEEEEcCC---CCEEEEEeCCCe
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQL-ASGSG---DTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSAD---GKHLVSGSKAGE  173 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l-~~~~~---d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~s~~~dg~  173 (456)
                      +.+.+|.+.|.+++|+|+++.+ ++|+.   ||.|++||+.+++..... .+|...|.+++|+|+   +++|++|+.||.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            4457899999999999999655 45555   899999999988765443 379999999999998   699999999999


Q ss_pred             EEEEeCCCCCCccccccCcccceEEEEeccc-ccCCCCCEEEEEeCCCcEEEEECCCCe-EEEEecCcCc----cEEEEE
Q 012799          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPV-HLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTL----AVTCVK  247 (456)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~~  247 (456)
                      |++||+.+++.....+.+|...|.++.|.+. .++++++.|++++.||.|++||+++++ .+..+..|..    .+.+++
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA  171 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence            9999999888334467889999999977652 344588999999999999999999886 6677765544    899998


Q ss_pred             ----eCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecC---cceeeeccccCCCCccCChHHHHHHHHh
Q 012799          248 ----WGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST---EYALRTGAFDHTGKQYSSPEEMKKAALE  319 (456)
Q Consensus       248 ----~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (456)
                          |++++ .+++++.||.|++||+++++.... ..+...+.+++|+|   +                           
T Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~---------------------------  223 (357)
T 3i2n_A          172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDIS---------------------------  223 (357)
T ss_dssp             EECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSS---------------------------
T ss_pred             EEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCC---------------------------
Confidence                67888 999999999999999999887554 55788999999998   5                           


Q ss_pred             hhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc----ccccccccEeEEEECCCCC-EEEEEECCCcEEEEeCCCC--
Q 012799          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT----RMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTG--  392 (456)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~--  392 (456)
                               +.++++++.||.|++||++.......    ...+|...|++++|+|+++ +|++|+.||.|++||+.++  
T Consensus       224 ---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  294 (357)
T 3i2n_A          224 ---------MNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ  294 (357)
T ss_dssp             ---------CCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred             ---------CCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence                     56799999999999999876543222    2238999999999999998 8999999999999998754  


Q ss_pred             -----------------eEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEE-EeeCCCceE
Q 012799          393 -----------------KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL-SGSKDSTLK  454 (456)
Q Consensus       393 -----------------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-s~s~Dg~v~  454 (456)
                                       +.+..+.+|..+|+++                           +|+|+|++|+ +++.||.|+
T Consensus       295 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~l~~s~~~d~~i~  347 (357)
T 3i2n_A          295 RSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL---------------------------DWSPDKRGLCVCSSFDQTVR  347 (357)
T ss_dssp             C--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE---------------------------EECSSSTTEEEEEETTSEEE
T ss_pred             cccccCCCCccccccccceeeccccCCCCeeEE---------------------------EEcCCCCeEEEEecCCCcEE
Confidence                             4677888999999999                           9999999998 899999999


Q ss_pred             EC
Q 012799          455 VT  456 (456)
Q Consensus       455 iW  456 (456)
                      ||
T Consensus       348 iw  349 (357)
T 3i2n_A          348 VL  349 (357)
T ss_dssp             EE
T ss_pred             EE
Confidence            99

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-41  Score=303.37  Aligned_cols=279  Identities=24%  Similarity=0.348  Sum_probs=250.0

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  178 (456)
                      +..+++.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++|+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            456788999999999999 9999999999999999999999988889999999999999999999999999999999999


Q ss_pred             CCCCCC--ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC-CC-eE
Q 012799          179 PQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DG-VI  254 (456)
Q Consensus       179 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l  254 (456)
                      +.....  ....+..|...|.++.|.       ++.+++++.||.|++||  .++....+..|...+.++++.+ ++ .+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSFQ-------DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEEE-------TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             eeecCCCCcccchhhcccCEEEEEec-------CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence            876542  223567899999999994       46999999999999999  7788888889999999999988 55 99


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeec-CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE
Q 012799          255 YTGSQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (456)
Q Consensus       255 ~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (456)
                      ++++.||.|++||  .++....+.. +...+.+++++|+                                    +. ++
T Consensus       159 ~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~~-~~  199 (313)
T 3odt_A          159 LTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDD------------------------------------GH-FI  199 (313)
T ss_dssp             EEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEET------------------------------------TE-EE
T ss_pred             EEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCC------------------------------------Ce-EE
Confidence            9999999999999  4567777776 8899999999987                                    33 89


Q ss_pred             EEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeee
Q 012799          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI  413 (456)
Q Consensus       334 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  413 (456)
                      +++.||.|++||++.. .....+.+|...|++++|+|++ .|++++.||.|++||+.+++.+..+..|..+|.++     
T Consensus       200 ~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~-----  272 (313)
T 3odt_A          200 SCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSV-----  272 (313)
T ss_dssp             EEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEE-----
T ss_pred             EccCCCeEEEEECCch-hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEE-----
Confidence            9999999999998765 4566678899999999999999 58899999999999999999999999999999999     


Q ss_pred             eeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                            +|+|+++ +++++.||.|++|
T Consensus       273 ----------------------~~~~~~~-~~~~~~dg~i~iw  292 (313)
T 3odt_A          273 ----------------------DCMSNGD-IIVGSSDNLVRIF  292 (313)
T ss_dssp             ----------------------EECTTSC-EEEEETTSCEEEE
T ss_pred             ----------------------EEccCCC-EEEEeCCCcEEEE
Confidence                                  8999998 6679999999998

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.5e-42  Score=314.88  Aligned_cols=282  Identities=17%  Similarity=0.224  Sum_probs=239.4

Q ss_pred             cccccCCcccEEEEEECCCC-CeEEEEECCCcEEEEeCCCCcceeEEe--cCCCCEEEEEEcC-CCCEEEEEeCCCeEEE
Q 012799          101 SATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSA-DGKHLVSGSKAGELQC  176 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~s~~~dg~i~v  176 (456)
                      .+.+.+|.+.|++++|+|++ ++||+|+.||.|++||+.+++....+.  +|...|.+++|+| ++++|++++.|+.|++
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i  145 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL  145 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence            45678999999999999999 999999999999999999888777765  6999999999999 7899999999999999


Q ss_pred             EeCCCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--e
Q 012799          177 WDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--V  253 (456)
Q Consensus       177 wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~  253 (456)
                      ||+++..... .....|...|.+++|+|     ++.++++++.||.|++||+ +++.+..+.+|...|.+++|+|++  .
T Consensus       146 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          146 RDFSGSVIQVFAKTDSWDYWYCCVDVSV-----SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EETTSCEEEEEECCCCSSCCEEEEEEET-----TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred             EECCCCceEEEeccCCCCCCeEEEEECC-----CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence            9998643221 01233457899999999     8999999999999999999 577888899999999999999988  7


Q ss_pred             EEEEeCCCcEEEEECCC----CeEEEEeecCCcceEEEEecC-cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799          254 IYTGSQDCTIKVWETTQ----GKLIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (456)
Q Consensus       254 l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (456)
                      +++++.|+.|++||+++    +..+..+ .|...+.+++|+| +                                    
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~------------------------------------  262 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTD------------------------------------  262 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTT------------------------------------
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCC------------------------------------
Confidence            99999999999999998    6667666 5899999999999 7                                    


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCccccccc-------c----------ccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-------Q----------QLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (456)
Q Consensus       329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~----------~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  391 (456)
                      +.++++++.|+.|++||++...... .+.+|       .          ..+..++|+|++++  +|+.||.|++||+.+
T Consensus       263 ~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~  339 (383)
T 3ei3_B          263 STKLLTTDQRNEIRVYSSYDWSKPD-QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS  339 (383)
T ss_dssp             SCEEEEEESSSEEEEEETTBTTSCS-EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT
T ss_pred             CCEEEEEcCCCcEEEEECCCCcccc-ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC
Confidence            5679999999999999987665432 22222       2          23445667777766  778999999999999


Q ss_pred             CeEEEEEec--ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          392 GKFVAVFRG--HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       392 ~~~~~~~~~--~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ++.+..+.+  |...+..+                           +|+|+|++|++|+ ||.|+||
T Consensus       340 ~~~~~~l~~~~~~~~~~~~---------------------------~~s~~g~~l~s~s-d~~i~iw  378 (383)
T 3ei3_B          340 GGLVHQLRDPNAAGIISLN---------------------------KFSPTGDVLASGM-GFNILIW  378 (383)
T ss_dssp             CCEEEEECBTTBCSCCCEE---------------------------EECTTSSEEEEEE-TTEEEEE
T ss_pred             CceeeeecCCCCCceEEEE---------------------------EEecCccEEEEec-CCcEEEE
Confidence            999999987  45677777                           8999999999997 9999999

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-42  Score=320.25  Aligned_cols=290  Identities=22%  Similarity=0.343  Sum_probs=250.8

Q ss_pred             eecccccccccC--CcccEEEEEECCCCC-eEEEEECCCcEEEEeC----CCCc------ceeEEec----------CCC
Q 012799           95 RPVNRCSATIAG--HTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL----NTQT------PMFKCTG----------HKN  151 (456)
Q Consensus        95 ~~~~~~~~~l~~--h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~----~~~~------~~~~~~~----------~~~  151 (456)
                      +......+.+..  |.+.|++++|+|+++ +||+|+.||.|++|++    .+++      ....+..          |..
T Consensus        30 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (425)
T 1r5m_A           30 DDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTN  109 (425)
T ss_dssp             ----CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CB
T ss_pred             ccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCC
Confidence            333344444544  559999999999999 9999999999999999    8877      4555544          677


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe
Q 012799          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK  231 (456)
Q Consensus       152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  231 (456)
                      .|++++|+|++++|++++.||.|++|| .+++... .+..|...|.+++|+|     ++++|++++.||.|++||+.+++
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~  182 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN-VLNFHRAPIVSVKWNK-----DGTHIISMDVENVTILWNVISGT  182 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE-EECCCCSCEEEEEECT-----TSSEEEEEETTCCEEEEETTTTE
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee-eccCCCccEEEEEECC-----CCCEEEEEecCCeEEEEECCCCc
Confidence            999999999999999999999999999 4454443 5778999999999999     88999999999999999999999


Q ss_pred             EEEEecCcCcc---------------EEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceee
Q 012799          232 CVICLSGHTLA---------------VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (456)
Q Consensus       232 ~~~~~~~~~~~---------------v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  296 (456)
                      .+..+..+...               +.+++|++++.+++++.+|.|++||+++++.+..+..|...+.+++|+|+    
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~----  258 (425)
T 1r5m_A          183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT----  258 (425)
T ss_dssp             EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT----
T ss_pred             EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC----
Confidence            99988877776               99999999999999999999999999999999899899999999999998    


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA  376 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  376 (456)
                                                      +.++++++.|+.|++||+.... ....+.+|...|.+++|+|++ +|+
T Consensus       259 --------------------------------~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~-~l~  304 (425)
T 1r5m_A          259 --------------------------------NKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD-KVI  304 (425)
T ss_dssp             --------------------------------TTEEEEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT-EEE
T ss_pred             --------------------------------CCEEEEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC-EEE
Confidence                                            5679999999999999977654 455567899999999999999 999


Q ss_pred             EEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          377 SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       377 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +++.||.|++||+.+++.+..+..|..+|.++                           +|+|++++|++++.||.|+||
T Consensus       305 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~---------------------------~~s~~~~~l~~~~~dg~i~i~  357 (425)
T 1r5m_A          305 SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAG---------------------------RISQDGQKYAVAFMDGQVNVY  357 (425)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECTTCCEEEE---------------------------EECTTSSEEEEEETTSCEEEE
T ss_pred             EEeCCCcEEEEECCCCcEeEecccCCccEEEE---------------------------EEcCCCCEEEEEECCCeEEEE
Confidence            99999999999999999999999999999999                           899999999999999999998

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.9e-42  Score=314.85  Aligned_cols=283  Identities=17%  Similarity=0.237  Sum_probs=246.2

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (456)
Q Consensus       104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  181 (456)
                      +..|.++|++++|+|++++||+|+.|+.|++||+.+++  .+..+.+|...|.+++|+|++++|++++.||.|++||+++
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            34699999999999999999999999999999999887  8888999999999999999999999999999999999988


Q ss_pred             CCCccc-cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe----EEEEecCcCccEEEEEeCCCC-eEE
Q 012799          182 GKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----CVICLSGHTLAVTCVKWGGDG-VIY  255 (456)
Q Consensus       182 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~l~  255 (456)
                      ++.... ....|...|.+++|+|     +++++++++.||.|++||++.++    .......|...|.+++|+|++ .++
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  158 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAP-----NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA  158 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECT-----TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             CeeeeeEEeecCCCceeEEEECC-----CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence            763321 3467889999999999     88999999999999999998776    233346789999999999998 899


Q ss_pred             EEeCCCcEEEEEC------------------CCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799          256 TGSQDCTIKVWET------------------TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (456)
Q Consensus       256 ~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (456)
                      +++.||.|++||+                  ..++.+..+..|...+.+++|+|+                         
T Consensus       159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------------  213 (372)
T 1k8k_C          159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN-------------------------  213 (372)
T ss_dssp             EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS-------------------------
T ss_pred             EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC-------------------------
Confidence            9999999999995                  467888999899999999999998                         


Q ss_pred             HhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC--CeE-
Q 012799          318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT--GKF-  394 (456)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~--~~~-  394 (456)
                                 +.++++++.|+.|++||++... ....+..|...|.+++|+|++++|++| .||.|++|++.+  ++. 
T Consensus       214 -----------~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~  280 (372)
T 1k8k_C          214 -----------GSRVAWVSHDSTVCLADADKKM-AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLS  280 (372)
T ss_dssp             -----------SSEEEEEETTTEEEEEEGGGTT-EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEE
T ss_pred             -----------CCEEEEEeCCCEEEEEECCCCc-eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEE
Confidence                       5679999999999999987654 556677899999999999999988887 899999999987  531 


Q ss_pred             -E------------------------------------EEE-ecccccEEEEEeeeeeeecCCCCceeeeccccccccee
Q 012799          395 -V------------------------------------AVF-RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS  436 (456)
Q Consensus       395 -~------------------------------------~~~-~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (456)
                       +                                    ..+ .+|..+|+++                           +
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~---------------------------~  333 (372)
T 1k8k_C          281 FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI---------------------------S  333 (372)
T ss_dssp             ECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEE---------------------------E
T ss_pred             EeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCccee---------------------------E
Confidence             1                                    222 3777788887                           7


Q ss_pred             Ee-cCC---CeEEEeeCCCceEEC
Q 012799          437 WS-ADS---RLLLSGSKDSTLKVT  456 (456)
Q Consensus       437 ~s-~dg---~~l~s~s~Dg~v~iW  456 (456)
                      |. ++|   ++|++|+.||.|+||
T Consensus       334 ~~~~~g~~~~~l~s~~~Dg~i~~W  357 (372)
T 1k8k_C          334 VLSGGKAKCSQFCTTGMDGGMSIW  357 (372)
T ss_dssp             EEESTTTSCSEEEEEETTSEEEEE
T ss_pred             EecCCCcceeeEEEecCCCceEEE
Confidence            55 676   999999999999999

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-41  Score=306.63  Aligned_cols=245  Identities=20%  Similarity=0.291  Sum_probs=211.4

Q ss_pred             CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE----EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK----CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  181 (456)
                      .|...|.+++|+|++ .|++|+.||+|+|||+.+++.+..    ..+|...|++++|+|++++|++|+.|++|++||+++
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            466789999999985 688999999999999998876544    348999999999999999999999999999999999


Q ss_pred             CCCccccccCcccceEEEEecccccCCCC-CEEEEEeCCCcEEEEECCCCeEEEEec--CcCccEEEEEeCCCC--eEEE
Q 012799          182 GKPSGNPLSGHKKWITGISWEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDG--VIYT  256 (456)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~--~l~~  256 (456)
                      ++.+. .+.+|...|.+++|+|     ++ ..|++++.|+.|++||++++++...+.  .+...+.+++|+|++  ++++
T Consensus       159 ~~~~~-~~~~h~~~V~~~~~~~-----~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s  232 (344)
T 4gqb_B          159 QVVLS-SYRAHAAQVTCVAASP-----HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVF  232 (344)
T ss_dssp             TEEEE-EECCCSSCEEEEEECS-----SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred             CcEEE-EEcCcCCceEEEEecC-----CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEE
Confidence            88765 6788999999999998     55 578999999999999999999888774  456679999999965  7889


Q ss_pred             EeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe
Q 012799          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (456)
Q Consensus       257 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (456)
                      |+.||.|++||+++++++..+.+|...|++++|+|++                                   ..+|++|+
T Consensus       233 g~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g-----------------------------------~~~lasgs  277 (344)
T 4gqb_B          233 GDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHS-----------------------------------VPFLASLS  277 (344)
T ss_dssp             EETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSS-----------------------------------SCCEEEEE
T ss_pred             eccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCC-----------------------------------CeEEEEEe
Confidence            9999999999999999999999999999999999983                                   34589999


Q ss_pred             CCCcEEEEecCCCCCCccccccccccEeEEEECCCCC-EEEEEECCCcEEEEeCCCCeE
Q 012799          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTGKF  394 (456)
Q Consensus       337 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~  394 (456)
                      .|++|++||+..++  ...+.+|.+.|++++|+|+++ +|++|+.||+|++|++.+...
T Consensus       278 ~D~~i~vwd~~~~~--~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          278 EDCSLAVLDSSLSE--LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             TTSCEEEECTTCCE--EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             CCCeEEEEECCCCc--EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            99999999976653  345689999999999999886 578999999999999987543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-42  Score=323.95  Aligned_cols=310  Identities=18%  Similarity=0.272  Sum_probs=247.3

Q ss_pred             cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC----CcceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeC
Q 012799          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----QTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~  179 (456)
                      ..|...|++++|+|++++|++|+.||.|++||+.+    .+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            36899999999999999999999999999999987    4577888899999999999998 899999999999999999


Q ss_pred             CCCC------Ccc--ccccCcccceEEEEecccccCCC-CCEEEEEeCCCcEEEEECCCCeEEEEecCc------CccEE
Q 012799          180 QTGK------PSG--NPLSGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSLRKCVICLSGH------TLAVT  244 (456)
Q Consensus       180 ~~~~------~~~--~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~  244 (456)
                      .+++      ...  .....|...|.+++|+|     + +.++++++.||.|++||+++++.+..+..+      ...|.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~  218 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ-----SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS  218 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECS-----SCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEE
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCC-----CCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceE
Confidence            9876      222  12467889999999999     6 689999999999999999999999888776      78999


Q ss_pred             EEEeCCCC--eEEEEeCCC---cEEEEECCCC-eEEEEee-cCCcceEEEEecC-cceeeeccccCCCCccCChHHHHHH
Q 012799          245 CVKWGGDG--VIYTGSQDC---TIKVWETTQG-KLIRELK-GHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKA  316 (456)
Q Consensus       245 ~~~~~~~~--~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  316 (456)
                      +++|+|++  .+++++.|+   .|++||++++ +.+..+. .|...|.+++|+| +                        
T Consensus       219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------------------  274 (416)
T 2pm9_A          219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD------------------------  274 (416)
T ss_dssp             EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSC------------------------
T ss_pred             EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCC------------------------
Confidence            99999986  889999998   9999999986 6677777 8999999999998 5                        


Q ss_pred             HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC-CEEEEEECCCcEEEEeCCCCeEE
Q 012799          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~  395 (456)
                                  +.++++++.|+.|++||+... .....+.+|...|.+++|+|++ .+|++++.||.|++||+.++...
T Consensus       275 ------------~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          275 ------------EHLLLSSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             ------------SSCEEEEESSSEEEEECSSSC-CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             ------------CCeEEEEeCCCCEEEeeCCCC-ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence                        566999999999999997765 4566678899999999999998 89999999999999999886643


Q ss_pred             EEEec--ccccEEEE-Eeeeee----eecCCCCc-eeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          396 AVFRG--HVGPVYQI-RFELIY----CFRYPSNF-YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       396 ~~~~~--~~~~v~~i-~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .....  ........ .|....    ........ ....-....+..++|+|||++|++++.||+|+||
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w  410 (416)
T 2pm9_A          342 LDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSIT  410 (416)
T ss_dssp             SCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCB
T ss_pred             cccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEE
Confidence            22211  00000000 000000    00000000 0000022334566999999999999999999999

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.8e-42  Score=314.78  Aligned_cols=284  Identities=19%  Similarity=0.290  Sum_probs=243.4

Q ss_pred             cccCCcccEEEEEECCC----CCeEEEEECCCcEEEEeCCCCcceeEEec-----CCCCEEEEEEcCC----CCEEEEEe
Q 012799          103 TIAGHTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFKCTG-----HKNWVLCIAWSAD----GKHLVSGS  169 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~~----~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~s~~  169 (456)
                      ...+|.++|++++|+|+    ...+++++.++.|++||+.+++.+..+..     |...|.+++|+|+    +++|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34589999999999984    44566666677999999998887766654     5578999999998    67999999


Q ss_pred             CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCccEEEE
Q 012799          170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCV  246 (456)
Q Consensus       170 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~  246 (456)
                      .||.|++||+.+++... .+.+|...|.+++|+|.    ++.+|++++.||.|++||+++++.+..+   ..|...|.++
T Consensus        93 ~dg~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  167 (366)
T 3k26_A           93 SRGIIRIINPITMQCIK-HYVGHGNAINELKFHPR----DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA  167 (366)
T ss_dssp             TTCEEEEECTTTCCEEE-EEESCCSCEEEEEECSS----CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred             CCCEEEEEEchhceEee-eecCCCCcEEEEEECCC----CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE
Confidence            99999999999988765 56789999999999983    5689999999999999999999999888   6899999999


Q ss_pred             EeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee----------------------------cCCcceEEEEecCcceeee
Q 012799          247 KWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK----------------------------GHGHWVNSLALSTEYALRT  297 (456)
Q Consensus       247 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~i~~~~~~~~~~~~~  297 (456)
                      +|+|++ .+++++.||.|++||+++++....+.                            .|...|.+++|+.      
T Consensus       168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------  241 (366)
T 3k26_A          168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG------  241 (366)
T ss_dssp             EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEET------
T ss_pred             EECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcC------
Confidence            999998 99999999999999999876543333                            2777788888762      


Q ss_pred             ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC-------------CccccccccccEe
Q 012799          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-------------PKTRMTGHQQLVN  364 (456)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~v~  364 (456)
                                                      +++++++.|+.|++||+.....             ....+..|...|+
T Consensus       242 --------------------------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  289 (366)
T 3k26_A          242 --------------------------------DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIW  289 (366)
T ss_dssp             --------------------------------TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSS
T ss_pred             --------------------------------CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEE
Confidence                                            3599999999999999876543             2344567888899


Q ss_pred             EEEECCC--CCEEEEEECCCcEEEEeCCCCe----EEEEEecc--cccEEEEEeeeeeeecCCCCceeeeccccccccee
Q 012799          365 HVYFSPD--GQWVASASFDKSIKLWNGTTGK----FVAVFRGH--VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS  436 (456)
Q Consensus       365 ~~~~sp~--~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~--~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (456)
                      +++|+|+  +++|++|+.||.|++||+.+++    ....+.+|  ...|+++                           +
T Consensus       290 ~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------~  342 (366)
T 3k26_A          290 YMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQT---------------------------S  342 (366)
T ss_dssp             CCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEE---------------------------E
T ss_pred             EEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEE---------------------------E
Confidence            9999999  9999999999999999999875    44577777  7899999                           9


Q ss_pred             EecCCCeEEEeeCCCceEEC
Q 012799          437 WSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       437 ~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      |+|++++|++|+.||.|+||
T Consensus       343 ~s~~~~~l~s~~~dg~i~iw  362 (366)
T 3k26_A          343 FSRDSSILIAVCDDASIWRW  362 (366)
T ss_dssp             ECTTSSEEEEEETTSEEEEE
T ss_pred             eCCCCCeEEEEeCCCEEEEE
Confidence            99999999999999999999

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-42  Score=323.45  Aligned_cols=282  Identities=17%  Similarity=0.327  Sum_probs=249.6

Q ss_pred             CcccEEEEEECCCCC-eEEEE----------ECCCcEEEEeCCCCc---ceeEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q 012799          107 HTEAVLSVAFSPDGR-QLASG----------SGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSADGKHLVSGSKAG  172 (456)
Q Consensus       107 h~~~V~~~~~s~~~~-~l~~~----------~~d~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  172 (456)
                      +...|.+++|+|+++ +||+|          +.|+.|++||+.++.   .+..+ .|...|.+++|+|++++|++++.||
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence            345788999999987 99999          889999999998875   33333 5899999999999999999999999


Q ss_pred             eEEEEeCCC---CCCccccccCcccceEEEEecccccCCC-CCEEEEEeCCCcEEEEECCCCe------EEEE---ecCc
Q 012799          173 ELQCWDPQT---GKPSGNPLSGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSLRK------CVIC---LSGH  239 (456)
Q Consensus       173 ~i~vwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~---~~~~  239 (456)
                      .|++||+.+   +......+.+|...|.+++|+|     + +.++++++.||.|++||+.+++      ....   ...|
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  164 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNA-----KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS  164 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS-----SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcC-----CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence            999999987   2323336778999999999999     6 7899999999999999998876      3322   3678


Q ss_pred             CccEEEEEeCCC-C-eEEEEeCCCcEEEEECCCCeEEEEeecC------CcceEEEEecCcceeeeccccCCCCccCChH
Q 012799          240 TLAVTCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIRELKGH------GHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (456)
Q Consensus       240 ~~~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (456)
                      ...|.+++|+|+ + .+++++.||.|++||+++++.+..+..+      ...+.+++|+|++                  
T Consensus       165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------  226 (416)
T 2pm9_A          165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN------------------  226 (416)
T ss_dssp             SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC------------------
T ss_pred             CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC------------------
Confidence            899999999998 4 8999999999999999999999988876      7889999999983                  


Q ss_pred             HHHHHHHhhhhhccCCCCCEEEEEeCCC---cEEEEecCCCCCCccccc-cccccEeEEEECC-CCCEEEEEECCCcEEE
Q 012799          312 EMKKAALERYNKIKGNAPERLVSGSDDF---TMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSP-DGQWVASASFDKSIKL  386 (456)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~s~~~dg~i~i  386 (456)
                                       ..++++++.|+   .|++||++....+...+. +|...|.+++|+| ++++|++++.||.|++
T Consensus       227 -----------------~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~  289 (416)
T 2pm9_A          227 -----------------STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL  289 (416)
T ss_dssp             -----------------TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEE
T ss_pred             -----------------CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEE
Confidence                             35699999998   999999988766777777 8999999999999 9999999999999999


Q ss_pred             EeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCC-CeEEEeeCCCceEEC
Q 012799          387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVT  456 (456)
Q Consensus       387 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~s~s~Dg~v~iW  456 (456)
                      ||+.+++.+..+.+|...|.++                           +|+|++ ++|++++.||.|+||
T Consensus       290 wd~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~~l~s~~~d~~i~iw  333 (416)
T 2pm9_A          290 WNPESAEQLSQFPARGNWCFKT---------------------------KFAPEAPDLFACASFDNKIEVQ  333 (416)
T ss_dssp             ECSSSCCEEEEEECSSSCCCCE---------------------------EECTTCTTEEEECCSSSEEEEE
T ss_pred             eeCCCCccceeecCCCCceEEE---------------------------EECCCCCCEEEEEecCCcEEEE
Confidence            9999999999999999999999                           999999 899999999999998

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-41  Score=316.17  Aligned_cols=278  Identities=18%  Similarity=0.306  Sum_probs=250.0

Q ss_pred             CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  185 (456)
                      +|.+.|++++|+|++++|++|+.||.|++|| .+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  184 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM  184 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence            3788999999999999999999999999999 667888889999999999999999999999999999999999988765


Q ss_pred             cccccCcccc---------------eEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799          186 GNPLSGHKKW---------------ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (456)
Q Consensus       186 ~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  250 (456)
                      . .+..+...               +.++.|+|     + ..+++++.+|.|++||+++++.+..+..|...|.+++|+|
T Consensus       185 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~  257 (425)
T 1r5m_A          185 Q-HFELKETGGSSINAENHSGDGSLGVDVEWVD-----D-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND  257 (425)
T ss_dssp             E-EECCC---------------CCCBSCCEEEE-----T-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET
T ss_pred             E-EeeccccCccceeeccccCCcceeeEEEEcC-----C-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC
Confidence            4 34444444               88888887     4 4689999999999999999999889999999999999999


Q ss_pred             CC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799          251 DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (456)
Q Consensus       251 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (456)
                      ++ .+++++.||.|++||+++++.+..+..|...+.+++|+|+                                    +
T Consensus       258 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~  301 (425)
T 1r5m_A          258 TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD------------------------------------D  301 (425)
T ss_dssp             TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETT------------------------------------T
T ss_pred             CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCC------------------------------------C
Confidence            98 9999999999999999999999999889999999999997                                    3


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe----------------
Q 012799          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK----------------  393 (456)
Q Consensus       330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~----------------  393 (456)
                       .+++++.|+.|++||+.... ....+..|...|.+++|+|++++|++++.||.|++||+.+++                
T Consensus       302 -~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  379 (425)
T 1r5m_A          302 -KVISCSMDGSVRLWSLKQNT-LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNP  379 (425)
T ss_dssp             -EEEEEETTSEEEEEETTTTE-EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------C
T ss_pred             -EEEEEeCCCcEEEEECCCCc-EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCc
Confidence             59999999999999976644 555677889999999999999999999999999999999888                


Q ss_pred             ----EEEEEecccc--cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          394 ----FVAVFRGHVG--PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       394 ----~~~~~~~~~~--~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                          .+..+.+|..  .|.++                           +|+|++++|++++.||.|++|
T Consensus       380 ~~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~l~~~~~dg~i~iw  421 (425)
T 1r5m_A          380 LPIPLYASYQSSQDNDYIFDL---------------------------SWNCAGNKISVAYSLQEGSVV  421 (425)
T ss_dssp             EECCEEEEECCTTCCCCEEEE---------------------------EECTTSSEEEEEESSSCCEEE
T ss_pred             ccchhhhhhcCcccCCceEEE---------------------------EccCCCceEEEEecCceEEEE
Confidence                8888988876  89999                           999999999999999999998

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.1e-40  Score=299.66  Aligned_cols=269  Identities=24%  Similarity=0.440  Sum_probs=237.2

Q ss_pred             cCcccEEEEEEeccc----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--
Q 012799           76 VSVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--  141 (456)
Q Consensus        76 ~~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--  141 (456)
                      .+...+..+.|.|+.          .+++|..  ......+..|...|.+++|+|++++|++|+.|+.|++|++.+..  
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~  132 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN  132 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence            366778888888754          4456643  45667888999999999999999999999999999999998753  


Q ss_pred             --ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC
Q 012799          142 --PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD  219 (456)
Q Consensus       142 --~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d  219 (456)
                        ....+.+|...|.++.|++++. +++++.|+.|++||+++++... .+.+|...|.+++|+|     ++.++++|+.|
T Consensus       133 ~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~sg~~d  205 (340)
T 1got_B          133 VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTT-TFTGHTGDVMSLSLAP-----DTRLFVSGACD  205 (340)
T ss_dssp             CEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECT-----TSSEEEEEETT
T ss_pred             ceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEE-EEcCCCCceEEEEECC-----CCCEEEEEeCC
Confidence              4456789999999999998775 8999999999999999987765 5778999999999999     88999999999


Q ss_pred             CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC--CcceEEEEecCcceee
Q 012799          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGH--GHWVNSLALSTEYALR  296 (456)
Q Consensus       220 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~  296 (456)
                      +.|++||++++++...+.+|...|.+++|+|++ .|++|+.||.|++||+++++.+..+..+  ...|.+++|+|+    
T Consensus       206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~----  281 (340)
T 1got_B          206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS----  281 (340)
T ss_dssp             SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT----
T ss_pred             CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC----
Confidence            999999999999999999999999999999999 9999999999999999999888776532  347999999998    


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA  376 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  376 (456)
                                                      +.++++|+.|+.|++||+... .....+.+|...|.+++|+|+|++|+
T Consensus       282 --------------------------------g~~l~~g~~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~  328 (340)
T 1got_B          282 --------------------------------GRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             --------------------------------SSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred             --------------------------------CCEEEEECCCCeEEEEEcccC-cEeeEeecCCCcEEEEEEcCCCCEEE
Confidence                                            667999999999999997654 45566789999999999999999999


Q ss_pred             EEECCCcEEEEe
Q 012799          377 SASFDKSIKLWN  388 (456)
Q Consensus       377 s~~~dg~i~iwd  388 (456)
                      +|+.||.|++||
T Consensus       329 s~s~D~~i~iWd  340 (340)
T 1got_B          329 TGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTSCEEEEC
T ss_pred             EEcCCccEEecC
Confidence            999999999997

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-42  Score=319.59  Aligned_cols=243  Identities=15%  Similarity=0.250  Sum_probs=204.5

Q ss_pred             cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC--cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  182 (456)
                      +.|.++|++++|+|++++||+|+.|+.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~   87 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD   87 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence            346789999999999999999999999999999988  778888999999999999999999999999999999999987


Q ss_pred             C--CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe---EEEEecC-cCccEEEEEeCCCC-eEE
Q 012799          183 K--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSG-HTLAVTCVKWGGDG-VIY  255 (456)
Q Consensus       183 ~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~~~~~~~~-~l~  255 (456)
                      +  .....+..|...|.+++|+|     ++++|++++.|+.|++||+++++   ....+.. |...|.+++|+|++ .|+
T Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  162 (377)
T 3dwl_C           88 GTWKQTLVLLRLNRAATFVRWSP-----NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA  162 (377)
T ss_dssp             -CCCCEEECCCCSSCEEEEECCT-----TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred             CceeeeeEecccCCceEEEEECC-----CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence            7  11224677999999999999     88999999999999999999887   3667777 99999999999998 999


Q ss_pred             EEeCCCcEEEEECC------------------CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799          256 TGSQDCTIKVWETT------------------QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (456)
Q Consensus       256 ~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (456)
                      +++.||.|++||++                  .++.+..+ .|...|.+++|+|+                         
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~-------------------------  216 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS-------------------------  216 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT-------------------------
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC-------------------------
Confidence            99999999999985                  35566677 89999999999998                         


Q ss_pred             HhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC---ccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                                 +.++++++.|+.|++||+.....+   ...+.+|...|.+++|+|++++|++|+.++.+ +|+..
T Consensus       217 -----------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          217 -----------GNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             -----------SSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             -----------CCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence                       556999999999999998876652   56678899999999999999999999866655 66654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.6e-40  Score=293.08  Aligned_cols=253  Identities=22%  Similarity=0.345  Sum_probs=218.0

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      +.+++.+|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus        57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~  136 (319)
T 3frx_A           57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI  136 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCcccceEEEEeccccc-CCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHL-NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~  257 (456)
                      +... .. .+.+|...|.++.|.|... ..++..+++++.|+.|++||+++.+....+.+|...|.+++|+|++ +|+++
T Consensus       137 ~~~~-~~-~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~  214 (319)
T 3frx_A          137 KGQC-LA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA  214 (319)
T ss_dssp             TSCE-EE-EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCe-EE-EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence            7443 32 5678999999999998432 1245589999999999999999999999999999999999999999 99999


Q ss_pred             eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (456)
                      +.||.|++||+++++.+..+.. ...+.+++|+|+                                    +.++++++.
T Consensus       215 ~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~------------------------------------~~~la~~~~  257 (319)
T 3frx_A          215 GKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPN------------------------------------RYWLAAATA  257 (319)
T ss_dssp             ETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSS------------------------------------SSEEEEEET
T ss_pred             eCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCC------------------------------------CCEEEEEcC
Confidence            9999999999999999988875 467999999998                                    445776665


Q ss_pred             CCcEEEEecCCCCCC-------ccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799          338 DFTMFLWEPAVSKQP-------KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       338 dg~i~iwd~~~~~~~-------~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  392 (456)
                       ..+++|++......       ......|...+.+++|+|+|++|++|+.||.|++||+.++
T Consensus       258 -~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          258 -TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             -TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             -CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence             45999997643211       1112345678999999999999999999999999998654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.5e-42  Score=319.38  Aligned_cols=298  Identities=17%  Similarity=0.197  Sum_probs=249.2

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      ..+++++|+|++++|++++.|+.|++||+.+++....+..| ..+....|++++++|++|+.||.|++||+.+++... .
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~  134 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE-I  134 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE-E
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee-e
Confidence            44568999999999999999999999999988777666656 455566789999999999999999999999877654 5


Q ss_pred             ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEE
Q 012799          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE  267 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd  267 (456)
                      +.+|...|.+++|+|     ++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++ .|++++.||.|++||
T Consensus       135 ~~~h~~~v~~~~~~~-----~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd  209 (420)
T 3vl1_A          135 DQAHVSEITKLKFFP-----SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE  209 (420)
T ss_dssp             TTSSSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             cccccCccEEEEECC-----CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence            678999999999999     88999999999999999999999999999999999999999998 899999999999999


Q ss_pred             CCCCeEEEEeec---CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEE
Q 012799          268 TTQGKLIRELKG---HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (456)
Q Consensus       268 ~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  344 (456)
                      +++++.+..+..   +...+.++++.+............               ......+.+++.++++++.||.|++|
T Consensus       210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------------~v~~~~~s~~~~~l~~~~~dg~i~i~  274 (420)
T 3vl1_A          210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS---------------KKNNLEFGTYGKYVIAGHVSGVITVH  274 (420)
T ss_dssp             TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC---------------CCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred             CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC---------------cccceEEcCCCCEEEEEcCCCeEEEE
Confidence            999999988874   566788888876532110000000               00112244568899999999999999


Q ss_pred             ecCCCCCCccccccccccEeEEEECCCCC-EEEEEECCCcEEEEeCCCCeE-EEEEec-ccccEEEEEeeeeeeecCCCC
Q 012799          345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTGKF-VAVFRG-HVGPVYQIRFELIYCFRYPSN  421 (456)
Q Consensus       345 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~i~~~~~~~~~~~~~  421 (456)
                      |++...........|...|++++|+|+++ +|++|+.||.|++||+++++. +..+.. |..+|.++             
T Consensus       275 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-------------  341 (420)
T 3vl1_A          275 NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-------------  341 (420)
T ss_dssp             ETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-------------
T ss_pred             ECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-------------
Confidence            99887766666667899999999999999 999999999999999998754 677776 66677777             


Q ss_pred             ceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       422 ~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                    . .+++++|++++.||.|++|
T Consensus       342 --------------~-~~~~~~l~s~~~d~~v~iw  361 (420)
T 3vl1_A          342 --------------Y-FAAGALFVSSGFDTSIKLD  361 (420)
T ss_dssp             --------------E-EETTEEEEEETTTEEEEEE
T ss_pred             --------------E-eCCCCEEEEecCCccEEEE
Confidence                          4 4578899999999999999

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-40  Score=294.17  Aligned_cols=253  Identities=23%  Similarity=0.409  Sum_probs=215.0

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC--CcceeEEecCCCCEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--QTPMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCW  177 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vw  177 (456)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+  .+.+..+.+|.+.|.+++|++  ++++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            35789999999999999999999999999999999974  367788999999999999986  48999999999999999


Q ss_pred             eCCCCCC-ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe--EEEEecCcCccEEEEEeCCC---
Q 012799          178 DPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGD---  251 (456)
Q Consensus       178 d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~---  251 (456)
                      |+++++. ....+..|...|.+++|+|..   .+.+|++++.|+.|++||++++.  ....+.+|...|.+++|+|+   
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~---~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  159 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHE---YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGG---GCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCC---CCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence            9988752 222456799999999999832   27899999999999999998753  23566789999999999996   


Q ss_pred             ----------C-eEEEEeCCCcEEEEECCCCe----EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799          252 ----------G-VIYTGSQDCTIKVWETTQGK----LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (456)
Q Consensus       252 ----------~-~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (456)
                                + .|++|+.|++|++||+++++    ....+.+|...|.+++|+|+..                      
T Consensus       160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~----------------------  217 (297)
T 2pm7_B          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL----------------------  217 (297)
T ss_dssp             ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----------------------
T ss_pred             ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC----------------------
Confidence                      3 89999999999999998765    5677889999999999999731                      


Q ss_pred             HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC--cccc--ccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP--KTRM--TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~--~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                                 .+.+|++++.|++|++||+......  ...+  ..|...|.+++|+|+|++|++++.||.|++|+..
T Consensus       218 -----------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          218 -----------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             -----------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             -----------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence                       1356999999999999998764321  1122  4678899999999999999999999999999976

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.6e-40  Score=297.29  Aligned_cols=254  Identities=25%  Similarity=0.400  Sum_probs=212.9

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (456)
Q Consensus       104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  181 (456)
                      ..+|.+.|.+++|+|++++||+|+.|++|++|++.++.  .+..+.+|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence            47899999999999999999999999999999988763  5678889999999999999999999999999999999987


Q ss_pred             CCCc--cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe--EEEEecCcCccEEEEEeCCCC-eEEE
Q 012799          182 GKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGDG-VIYT  256 (456)
Q Consensus       182 ~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~  256 (456)
                      +...  ...+.+|...|.+++|+|     ++.+|++++.|+.|++||.+.++  +...+.+|...|.+++|+|++ .|++
T Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~p-----~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s  211 (345)
T 3fm0_A          137 EDEYECVSVLNSHTQDVKHVVWHP-----SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS  211 (345)
T ss_dssp             TSCEEEEEEECCCCSCEEEEEECS-----SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CCCeEEEEEecCcCCCeEEEEECC-----CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEE
Confidence            6532  234678999999999999     88999999999999999998875  456788999999999999999 9999


Q ss_pred             EeCCCcEEEEECCCC---------------eEEEEeec-CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799          257 GSQDCTIKVWETTQG---------------KLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (456)
Q Consensus       257 ~~~dg~i~iwd~~~~---------------~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (456)
                      ++.||+|++||....               +++..+.+ |...|.+++|+++                            
T Consensus       212 ~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~----------------------------  263 (345)
T 3fm0_A          212 CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL----------------------------  263 (345)
T ss_dssp             EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT----------------------------
T ss_pred             EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC----------------------------
Confidence            999999999996321               23444444 7788999999987                            


Q ss_pred             hhhccCCCCCEEEEEeCCCcEEEEecCCCCCCc--------cccccccccEeEEEECCCC-CEEEEEECCCcEEEEeCCC
Q 012799          321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK--------TRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTT  391 (456)
Q Consensus       321 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~  391 (456)
                              +..+++++.|+.|++|+........        ....+|...|++++|+|++ .+||+|+.||.|++|++.+
T Consensus       264 --------~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          264 --------TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             --------TCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             --------CCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence                    4569999999999999976543211        1235899999999999987 5999999999999999998


Q ss_pred             CeEEEEE
Q 012799          392 GKFVAVF  398 (456)
Q Consensus       392 ~~~~~~~  398 (456)
                      ++.+..+
T Consensus       336 ~~~~~~~  342 (345)
T 3fm0_A          336 PEGLHHH  342 (345)
T ss_dssp             -------
T ss_pred             CCCcccc
Confidence            8766544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-40  Score=306.61  Aligned_cols=279  Identities=20%  Similarity=0.355  Sum_probs=241.6

Q ss_pred             ccCCcccE--EEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEec-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799          104 IAGHTEAV--LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       104 l~~h~~~V--~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  180 (456)
                      ..+|.+.+  .+++|++  ..+++++.|+.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|++||+.
T Consensus        87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence            44676654  4466654  5688888999999999999988877765 88999999999999999999999999999999


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC-CCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~  258 (456)
                      +++... .+.+|...|.+++|.+       ..+++++.||.|++||++ ....+..+.+|...|.+++|+|++ .+++++
T Consensus       165 ~~~~~~-~~~~~~~~v~~~~~~~-------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  236 (401)
T 4aez_A          165 SQTKLR-TMAGHQARVGCLSWNR-------HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG  236 (401)
T ss_dssp             TCCEEE-EECCCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCeEEE-EecCCCCceEEEEECC-------CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence            887665 5678999999999954       699999999999999998 567788888999999999999998 999999


Q ss_pred             CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe--
Q 012799          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS--  336 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--  336 (456)
                      .||.|++||+++++.+..+..|...|.+++|+|++                                   ...+++++  
T Consensus       237 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~-----------------------------------~~ll~~~~gs  281 (401)
T 4aez_A          237 NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ-----------------------------------SNLLATGGGT  281 (401)
T ss_dssp             TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTS-----------------------------------TTEEEEECCT
T ss_pred             CCCeEEEccCCCCCccEEecCCcceEEEEEECCCC-----------------------------------CCEEEEecCC
Confidence            99999999999999999999999999999999973                                   34566655  


Q ss_pred             CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE--ECCCcEEEEeCCCCeEEE--EEecccccEEEEEeee
Q 012799          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA--SFDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFEL  412 (456)
Q Consensus       337 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~--~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~  412 (456)
                      .|+.|++||+..... ...+ .+...|.+++|+|++++|+++  +.||.|++||+.+++...  .+.+|...|.++    
T Consensus       282 ~d~~i~i~d~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~----  355 (401)
T 4aez_A          282 MDKQIHFWNAATGAR-VNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYS----  355 (401)
T ss_dssp             TTCEEEEEETTTCCE-EEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEE----
T ss_pred             CCCEEEEEECCCCCE-EEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEE----
Confidence            799999999876543 3333 466789999999999999994  489999999999976554  467899999999    


Q ss_pred             eeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                             +|+|+|++|++++.||.|++|
T Consensus       356 -----------------------~~s~dg~~l~s~~~dg~i~iw  376 (401)
T 4aez_A          356 -----------------------ALSPDGRILSTAASDENLKFW  376 (401)
T ss_dssp             -----------------------EECTTSSEEEEECTTSEEEEE
T ss_pred             -----------------------EECCCCCEEEEEeCCCcEEEE
Confidence                                   999999999999999999999

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-40  Score=332.50  Aligned_cols=344  Identities=13%  Similarity=0.118  Sum_probs=260.1

Q ss_pred             cccEEEEEEeccc----------eEEEeeccccc-ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE
Q 012799           78 VEKVLSIVYQPQA----------VFRIRPVNRCS-ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC  146 (456)
Q Consensus        78 ~~~~~~~~~~~~~----------~~~~~~~~~~~-~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~  146 (456)
                      ...+..+.|+|+.          .+++|...... .....|..+|.+++|+| |++|++++.|++|++||+.+++.+..+
T Consensus        17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~   95 (902)
T 2oaj_A           17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV   95 (902)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred             CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE
Confidence            4567778888754          34455433221 12235889999999999 889999999999999999999988888


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc----------ccccCcccceEEEEecccccCCCCCEEEEE
Q 012799          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG----------NPLSGHKKWITGISWEPVHLNAPCRRFVSA  216 (456)
Q Consensus       147 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~  216 (456)
                      . |...|++++|+|++++|++|+.||.|++||+++++...          ....+|...|.+++|+|.    ++..+++|
T Consensus        96 ~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~----~~~~l~~g  170 (902)
T 2oaj_A           96 F-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR----DIGTVLIS  170 (902)
T ss_dssp             E-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT----EEEEEEEE
T ss_pred             c-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC----CCCEEEEE
Confidence            6 77899999999999999999999999999999876421          235678999999999992    24689999


Q ss_pred             eCCCcEEEEECCCCeEEEEecCc------------------CccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEE-
Q 012799          217 SKDGDARIWDVSLRKCVICLSGH------------------TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE-  276 (456)
Q Consensus       217 ~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~-  276 (456)
                      +.||.| +||+++++++..+..|                  ...|.+++|+|+| .|++++.||.|++||+++++++.. 
T Consensus       171 ~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r  249 (902)
T 2oaj_A          171 YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMAR  249 (902)
T ss_dssp             CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence            999999 9999999998888765                  4779999999999 999999999999999999987653 


Q ss_pred             -ee---c-------------CCcceEEEEec----Ccc--eeeeccccCC-----CCccC--------------------
Q 012799          277 -LK---G-------------HGHWVNSLALS----TEY--ALRTGAFDHT-----GKQYS--------------------  308 (456)
Q Consensus       277 -~~---~-------------~~~~i~~~~~~----~~~--~~~~~~~~~~-----~~~~~--------------------  308 (456)
                       +.   .             +...|.+++|+    |+.  .+.+++.+..     ...+.                    
T Consensus       250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~  329 (902)
T 2oaj_A          250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYA  329 (902)
T ss_dssp             CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHH
T ss_pred             eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhc
Confidence             21   1             24479999995    332  2233322110     00000                    


Q ss_pred             -------------------------ChHHHH-H---------------------H-HHhh-------------------h
Q 012799          309 -------------------------SPEEMK-K---------------------A-ALER-------------------Y  321 (456)
Q Consensus       309 -------------------------~~~~~~-~---------------------~-~~~~-------------------~  321 (456)
                                               .+.... .                     . ....                   +
T Consensus       330 ~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~  409 (902)
T 2oaj_A          330 NPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMA  409 (902)
T ss_dssp             SCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEE
T ss_pred             CccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEE
Confidence                                     000000 0                     0 0000                   0


Q ss_pred             ------------------------------hhccCCCCCEEEEEeCCCcEEEEecCCCCCCc-ccc---------ccccc
Q 012799          322 ------------------------------NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK-TRM---------TGHQQ  361 (456)
Q Consensus       322 ------------------------------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~---------~~~~~  361 (456)
                                                    ...+.++++++++|+.|++|++||+..+.... ..+         .+|..
T Consensus       410 s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~  489 (902)
T 2oaj_A          410 ASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKEL  489 (902)
T ss_dssp             EEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSC
T ss_pred             EEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCC
Confidence                                          00113567899999999999999987663211 011         27889


Q ss_pred             cEeEEEECCCCCEEEEEECCCcEEEEeCCCCe---------------------------------------------EEE
Q 012799          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGK---------------------------------------------FVA  396 (456)
Q Consensus       362 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~---------------------------------------------~~~  396 (456)
                      .|++++|+|||++||+|+.||+|++||+.+++                                             ++.
T Consensus       490 ~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  569 (902)
T 2oaj_A          490 AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPST  569 (902)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEE
T ss_pred             ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeE
Confidence            99999999999999999999999999987662                                             366


Q ss_pred             EEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          397 VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       397 ~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .+.+|.+.|+++                           +||||| +||+|+.|++|+||
T Consensus       570 ~l~~h~~~V~sv---------------------------afSpdG-~lAsgs~D~tv~lw  601 (902)
T 2oaj_A          570 AVHANKGKTSAI---------------------------NNSNIG-FVGIAYAAGSLMLI  601 (902)
T ss_dssp             EECCCSCSEEEE---------------------------EECBTS-EEEEEETTSEEEEE
T ss_pred             EEEcCCCcEEEE---------------------------EecCCc-EEEEEeCCCcEEEE
Confidence            778888889888                           899999 99999999999998

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.8e-40  Score=300.86  Aligned_cols=274  Identities=18%  Similarity=0.168  Sum_probs=241.6

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc---ceeEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeC
Q 012799          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDP  179 (456)
Q Consensus       104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~  179 (456)
                      ..+|.+.|++++|+|++++|++++.||.|++|++.+++   ....+.+|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            45899999999999999999999999999999998876   3455568999999999999999 9999999999999999


Q ss_pred             -CCCCCccccccC--cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC---------CeEEEEecCcCccEEEEE
Q 012799          180 -QTGKPSGNPLSG--HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---------RKCVICLSGHTLAVTCVK  247 (456)
Q Consensus       180 -~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~  247 (456)
                       .+++..  .+.+  |...|.+++|+|      +..+++++.|+.|++||+++         ++++..+. |...|.+++
T Consensus        87 ~~~~~~~--~~~~~~~~~~v~~l~~~~------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~  157 (342)
T 1yfq_A           87 IGSPSFQ--ALTNNEANLGICRICKYG------DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD  157 (342)
T ss_dssp             SSSSSEE--ECBSCCCCSCEEEEEEET------TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE
T ss_pred             ccCCceE--eccccCCCCceEEEEeCC------CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEE
Confidence             877653  4667  999999999987      36999999999999999987         66665555 889999999


Q ss_pred             eCCCCeEEEEeCCCcEEEEECCC-Ce--EEEEeecCCcceEEEEecC-cceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799          248 WGGDGVIYTGSQDCTIKVWETTQ-GK--LIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (456)
Q Consensus       248 ~~~~~~l~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (456)
                      |++++ +++++.|+.|++||+++ +.  .......+...+.+++++| +                               
T Consensus       158 ~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-------------------------------  205 (342)
T 1yfq_A          158 TNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE-------------------------------  205 (342)
T ss_dssp             ECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG-------------------------------
T ss_pred             ecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCC-------------------------------
Confidence            99987 99999999999999998 44  3344456788899999999 7                               


Q ss_pred             ccCCCCCEEEEEeCCCcEEEEecCCC-----CCCccccccccc---------cEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799          324 IKGNAPERLVSGSDDFTMFLWEPAVS-----KQPKTRMTGHQQ---------LVNHVYFSPDGQWVASASFDKSIKLWNG  389 (456)
Q Consensus       324 ~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~---------~v~~~~~sp~~~~l~s~~~dg~i~iwd~  389 (456)
                           +.++++++.||.+++|++...     ......+..|..         .|.+++|+|++++|++|+.||.|++||+
T Consensus       206 -----~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          206 -----QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             -----GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             -----CCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence                 456999999999999998776     355556666654         9999999999999999999999999999


Q ss_pred             CCCeEEEEEecc-cccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCc
Q 012799          390 TTGKFVAVFRGH-VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST  452 (456)
Q Consensus       390 ~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~  452 (456)
                      .+++.+..+.+| ..+|.++                           +  |++++|++|+.||+
T Consensus       281 ~~~~~~~~~~~~h~~~v~~~---------------------------~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          281 QTRKKIKNFAKFNEDSVVKI---------------------------A--CSDNILCLATSDDT  315 (342)
T ss_dssp             TTTEEEEECCCCSSSEEEEE---------------------------E--ECSSEEEEEEECTH
T ss_pred             ccHhHhhhhhcccCCCceEe---------------------------c--CCCCeEEEEecCCc
Confidence            999999999998 9999999                           7  99999999999998

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.2e-41  Score=314.78  Aligned_cols=286  Identities=16%  Similarity=0.218  Sum_probs=228.5

Q ss_pred             cccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCcce--eEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEE
Q 012799          101 SATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQC  176 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~v  176 (456)
                      .....+|...|+|++|+| ++++||+|+.||+|+|||+.+++..  ..+.+|.+.|++|+|+| ++++|++|+.||+|++
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            345567999999999999 5679999999999999999877644  34568999999999998 7899999999999999


Q ss_pred             EeCCCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--e
Q 012799          177 WDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--V  253 (456)
Q Consensus       177 wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~  253 (456)
                      ||++++.... .....+...+.+++|+|     ++.+|++|+.||.|++||++. +.+..+.+|...|.+++|+|++  .
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~  265 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSA-----SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWF  265 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEET-----TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSE
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECC-----CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceE
Confidence            9998654322 11223345678899998     899999999999999999864 5567788999999999999987  7


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEE---eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCC
Q 012799          254 IYTGSQDCTIKVWETTQGKLIRE---LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (456)
Q Consensus       254 l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (456)
                      +++++.|+.|++||+++.+....   ..+|...|.+++|+|+                                    +.
T Consensus       266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spd------------------------------------g~  309 (435)
T 4e54_B          266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD------------------------------------GA  309 (435)
T ss_dssp             EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTT------------------------------------SS
T ss_pred             EEEecCcceeeEEecccccccceEEEeeeccccccceeECCC------------------------------------CC
Confidence            88999999999999988764433   3568889999999998                                    66


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCccccccccc------cEeEEEECCCCCEEEEEE------------CCCcEEEEeCCCC
Q 012799          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ------LVNHVYFSPDGQWVASAS------------FDKSIKLWNGTTG  392 (456)
Q Consensus       331 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~v~~~~~sp~~~~l~s~~------------~dg~i~iwd~~~~  392 (456)
                      +|++++.||.|++||+........ +..|..      .+....|+|++.++++++            .++.|++||..++
T Consensus       310 ~l~s~~~D~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g  388 (435)
T 4e54_B          310 RLLTTDQKSEIRVYSASQWDCPLG-LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG  388 (435)
T ss_dssp             EEEEEESSSCEEEEESSSSSSEEE-ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC
T ss_pred             eeEEEcCCCEEEEEECCCCccceE-EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC
Confidence            799999999999999876554322 222221      233456777776666654            3457999999999


Q ss_pred             eEEEEEe-cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          393 KFVAVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       393 ~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +.+..+. +|...|.++.                          +|+|+|++|++|+ |++|+||
T Consensus       389 ~~~~~l~~~~~~~v~s~~--------------------------~fspdg~~lasg~-d~~i~iW  426 (435)
T 4e54_B          389 KMMCQLYDPESSGISSLN--------------------------EFNPMGDTLASAM-GYHILIW  426 (435)
T ss_dssp             CEEEEECCSSCCCCCCEE--------------------------EECTTSSCEEEEC-SSEEEEC
T ss_pred             cEEEEEeCCCCCcEEEEE--------------------------EECCCCCEEEEEc-CCcEEEE
Confidence            9988765 6777777661                          5899999999876 8899999

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.9e-40  Score=308.21  Aligned_cols=295  Identities=19%  Similarity=0.234  Sum_probs=246.9

Q ss_pred             eEEEeecc--cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE
Q 012799           91 VFRIRPVN--RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG  168 (456)
Q Consensus        91 ~~~~~~~~--~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  168 (456)
                      .+.+|...  .....+.+| ..+....|+|++++||+|+.||.|++||+.+++....+.+|...|.+++|+|++++|+++
T Consensus        79 ~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  157 (420)
T 3vl1_A           79 HDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISS  157 (420)
T ss_dssp             EEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEE
T ss_pred             cEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEE
Confidence            34445432  345556666 555666889999999999999999999999988888888999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC---cCccEEE
Q 012799          169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---HTLAVTC  245 (456)
Q Consensus       169 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~  245 (456)
                      +.|+.|++||+++++... .+.+|...|.+++|+|     ++.+|++++.||.|++||+++++.+..+..   +...+.+
T Consensus       158 s~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~  231 (420)
T 3vl1_A          158 SQDMQLKIWSVKDGSNPR-TLIGHRATVTDIAIID-----RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS  231 (420)
T ss_dssp             ETTSEEEEEETTTCCCCE-EEECCSSCEEEEEEET-----TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEE
T ss_pred             eCCCeEEEEeCCCCcCce-EEcCCCCcEEEEEEcC-----CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccE
Confidence            999999999999988765 5678999999999999     899999999999999999999999988864   3344444


Q ss_pred             ---------------------EEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCcceEEEEecCcceeeeccccC
Q 012799          246 ---------------------VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDH  302 (456)
Q Consensus       246 ---------------------~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~  302 (456)
                                           ++|+|++ .+++++.||.|++||+++++.+..+. .|...+.+++|+|+          
T Consensus       232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~----------  301 (420)
T 3vl1_A          232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGN----------  301 (420)
T ss_dssp             EEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSS----------
T ss_pred             EEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCC----------
Confidence                                 4557888 89999999999999999998877765 47889999999998          


Q ss_pred             CCCccCChHHHHHHHHhhhhhccCCCCC-EEEEEeCCCcEEEEecCCCCCCcccccc-ccccEeEEEECCCCCEEEEEEC
Q 012799          303 TGKQYSSPEEMKKAALERYNKIKGNAPE-RLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASF  380 (456)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~  380 (456)
                                                +. ++++|+.||.|++||++....+...+.. |...|.++.+ +++++|++++.
T Consensus       302 --------------------------~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~  354 (420)
T 3vl1_A          302 --------------------------NANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGF  354 (420)
T ss_dssp             --------------------------CTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETT
T ss_pred             --------------------------CCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecC
Confidence                                      34 7999999999999999887665665655 6778888865 57889999999


Q ss_pred             CCcEEEEeCCCCe---------EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC---eEEEee
Q 012799          381 DKSIKLWNGTTGK---------FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR---LLLSGS  448 (456)
Q Consensus       381 dg~i~iwd~~~~~---------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~s~s  448 (456)
                      ||.|++|++....         ....+..|.+.|.++                           +|+|+++   .|++++
T Consensus       355 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~~g~l~a~g  407 (420)
T 3vl1_A          355 DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQF---------------------------CYVSDDESNGEVLEVG  407 (420)
T ss_dssp             TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEE---------------------------EEECCSSSSCEEEEEE
T ss_pred             CccEEEEeccCCCCCccceeccCccEEccCCcceEEE---------------------------EEccCCCCcceEEEEc
Confidence            9999999987732         122345666777777                           8999999   788889


Q ss_pred             CCCceEEC
Q 012799          449 KDSTLKVT  456 (456)
Q Consensus       449 ~Dg~v~iW  456 (456)
                      .+|.+++|
T Consensus       408 ~~g~~~~~  415 (420)
T 3vl1_A          408 KNNFCALY  415 (420)
T ss_dssp             TTTEEEEE
T ss_pred             CCceEEEE
Confidence            99999998

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.3e-39  Score=294.06  Aligned_cols=273  Identities=21%  Similarity=0.377  Sum_probs=238.8

Q ss_pred             CcCcccEEEEEEeccc----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC--
Q 012799           75 KVSVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--  140 (456)
Q Consensus        75 ~~~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~--  140 (456)
                      ..+...+..+.|.|+.          .+++|..  ....+.+..|...|.+++|+|+|++||+|+.|+.+++|++...  
T Consensus        61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~  140 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN  140 (354)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred             cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence            3467788999998864          4566653  4456778889999999999999999999999999999998653  


Q ss_pred             ----cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEE
Q 012799          141 ----TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA  216 (456)
Q Consensus       141 ----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~  216 (456)
                          .....+.+|...|.+++|+|++..|++++.|++|++||+++++... .+.+|...|.+++|.|..   ++++|++|
T Consensus       141 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~-~~~~h~~~v~~~~~~~~~---~g~~l~sg  216 (354)
T 2pbi_B          141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ-SFHGHGADVLCLDLAPSE---TGNTFVSG  216 (354)
T ss_dssp             CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECCCS---SCCEEEEE
T ss_pred             ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEcCCCCCeEEEEEEeCC---CCCEEEEE
Confidence                3456677899999999999999999999999999999999988765 577899999999998732   56899999


Q ss_pred             eCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC--CcceEEEEecCcc
Q 012799          217 SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGH--GHWVNSLALSTEY  293 (456)
Q Consensus       217 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~  293 (456)
                      +.||.|++||+++++++..+.+|...|.+++|+|++ .|++++.|++|++||++.++.+..+..+  ...+.+++|+|+ 
T Consensus       217 s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~-  295 (354)
T 2pbi_B          217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS-  295 (354)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT-
T ss_pred             eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC-
Confidence            999999999999999999999999999999999998 9999999999999999998877766543  346889999987 


Q ss_pred             eeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCC
Q 012799          294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ  373 (456)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~  373 (456)
                                                         +.++++|+.|+.|++||+..+. ....+.+|...|++++|+|+|+
T Consensus       296 -----------------------------------g~~l~~g~~d~~i~vwd~~~~~-~~~~l~~h~~~v~~l~~spdg~  339 (354)
T 2pbi_B          296 -----------------------------------GRLLFAGYNDYTINVWDVLKGS-RVSILFGHENRVSTLRVSPDGT  339 (354)
T ss_dssp             -----------------------------------SSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSS
T ss_pred             -----------------------------------CCEEEEEECCCcEEEEECCCCc-eEEEEECCCCcEEEEEECCCCC
Confidence                                               5679999999999999986654 4556789999999999999999


Q ss_pred             EEEEEECCCcEEEEe
Q 012799          374 WVASASFDKSIKLWN  388 (456)
Q Consensus       374 ~l~s~~~dg~i~iwd  388 (456)
                      +|++|+.||.|++|+
T Consensus       340 ~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          340 AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CEEEEETTSEEEEEC
T ss_pred             EEEEEcCCCCEEecC
Confidence            999999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.5e-40  Score=302.06  Aligned_cols=247  Identities=19%  Similarity=0.270  Sum_probs=207.4

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee----EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  177 (456)
                      ....+|...|++++|+|+++ +++++.||+|+|||+.+++...    ...+|...|++++|+|++++|++|+.|+.|++|
T Consensus        88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw  166 (357)
T 4g56_B           88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW  166 (357)
T ss_dssp             SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            34457999999999999986 5567789999999998876442    345799999999999999999999999999999


Q ss_pred             eCCCCCCccccccCcccceEEEEecccccCCCC-CEEEEEeCCCcEEEEECCCCeEEEEe--cCcCccEEEEEeCCCC--
Q 012799          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG--  252 (456)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~--  252 (456)
                      |+++++... .+.+|...|.+++|+|     ++ ..+++++.||.|++||++++++...+  ..+...+.+++|+|++  
T Consensus       167 d~~~~~~~~-~~~~h~~~v~~v~~s~-----~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~  240 (357)
T 4g56_B          167 DLSQKAVLK-SYNAHSSEVNCVAACP-----GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD  240 (357)
T ss_dssp             ETTTTEEEE-EECCCSSCEEEEEECT-----TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT
T ss_pred             ECCCCcEEE-EEcCCCCCEEEEEEcc-----CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc
Confidence            999988765 5788999999999998     55 47899999999999999988876554  3567789999999975  


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (456)
                      .|++|+.|+.|++||+++++.+..+..|...|.+++|+|++                                   +.+|
T Consensus       241 ~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~-----------------------------------~~~l  285 (357)
T 4g56_B          241 TFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHS-----------------------------------SPFL  285 (357)
T ss_dssp             EEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSS-----------------------------------SCCE
T ss_pred             eEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCC-----------------------------------CCEE
Confidence            78899999999999999999999999999999999999873                                   3468


Q ss_pred             EEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC-CCCEEEEEECCCcEEEEeCCCC
Q 012799          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~  392 (456)
                      ++|+.|++|++||+..++ .. ...+|...|++++|+| ++++|++|+.||+|++|++.+.
T Consensus       286 asgs~D~~i~iwd~~~~~-~~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          286 ASISEDCTVAVLDADFSE-VF-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEETTSCEEEECTTSCE-EE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEEeCCCEEEEEECCCCc-Ee-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            999999999999987653 23 3458999999999999 8999999999999999999764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-40  Score=293.95  Aligned_cols=273  Identities=24%  Similarity=0.343  Sum_probs=213.5

Q ss_pred             CcccEEEEEEecc--------ceEEEeecc----cccccc-cC-CcccEEEEEECCCCCeEEEEECCCcEEEEeCCC---
Q 012799           77 SVEKVLSIVYQPQ--------AVFRIRPVN----RCSATI-AG-HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT---  139 (456)
Q Consensus        77 ~~~~~~~~~~~~~--------~~~~~~~~~----~~~~~l-~~-h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~---  139 (456)
                      +.+.+..+.+.|+        ..+++|...    .....+ .+ |.+.|.+++|+|++++||+|+.|++|++||+..   
T Consensus        13 h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~   92 (330)
T 2hes_X           13 YKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD   92 (330)
T ss_dssp             CSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-----
T ss_pred             CCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcC
Confidence            4455666666654        233444432    233445 44 999999999999999999999999999999853   


Q ss_pred             ----CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-C--ccccccCcccceEEEEecccccCCCCCE
Q 012799          140 ----QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-P--SGNPLSGHKKWITGISWEPVHLNAPCRR  212 (456)
Q Consensus       140 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~  212 (456)
                          .+.+..+.+|...|.+++|+|++++|++|+.|++|++||++... .  ....+.+|...|.+++|+|     ++.+
T Consensus        93 ~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-----~~~~  167 (330)
T 2hes_X           93 RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-----SEAL  167 (330)
T ss_dssp             --CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-----SSSE
T ss_pred             ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-----CCCE
Confidence                34566788999999999999999999999999999999995432 1  1224678999999999999     8899


Q ss_pred             EEEEeCCCcEEEEECCCC--eEEEEecCcCccEEEEEeCCC--C-eEEEEeCCCcEEEEECCCC--------eEEEEeec
Q 012799          213 FVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQG--------KLIRELKG  279 (456)
Q Consensus       213 l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~iwd~~~~--------~~~~~~~~  279 (456)
                      |++++.|+.|++||..++  +++..+.+|...|.+++|+|+  + .+++++.|++|++||++.+        .....+..
T Consensus       168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~  247 (330)
T 2hes_X          168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD  247 (330)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS
T ss_pred             EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc
Confidence            999999999999999776  678889999999999999998  5 7999999999999998754        34445554


Q ss_pred             -CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC--CCcccc
Q 012799          280 -HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK--QPKTRM  356 (456)
Q Consensus       280 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~  356 (456)
                       |...|.+++|+++                                     ..+++++.||.|++||...+.  ......
T Consensus       248 ~h~~~v~~v~~s~~-------------------------------------~~l~s~~~dg~v~iw~~~~~~~~~~~~~~  290 (330)
T 2hes_X          248 VHKRQVYNVAWGFN-------------------------------------GLIASVGADGVLAVYEEVDGEWKVFAKRA  290 (330)
T ss_dssp             CCSSCEEEEEECTT-------------------------------------SCEEEEETTSCEEEEEEETTEEEEEEEES
T ss_pred             ccccceEEEEEcCC-------------------------------------CEEEEEeCCCEEEEEEcCCCceEEEeccc
Confidence             8889999999864                                     259999999999999976542  122234


Q ss_pred             ccccc-cEeEEEECC--CCCEEEEEECCCcEEEEeCCC
Q 012799          357 TGHQQ-LVNHVYFSP--DGQWVASASFDKSIKLWNGTT  391 (456)
Q Consensus       357 ~~~~~-~v~~~~~sp--~~~~l~s~~~dg~i~iwd~~~  391 (456)
                      .+|.. .|.+++|+|  ++++|++|+.||.|++||+++
T Consensus       291 ~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          291 LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            57776 899999999  789999999999999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.1e-39  Score=301.12  Aligned_cols=291  Identities=19%  Similarity=0.317  Sum_probs=243.3

Q ss_pred             cccccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCcceeEEe-------------cCCCCEEEEEEcC-CCC
Q 012799           99 RCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCT-------------GHKNWVLCIAWSA-DGK  163 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~  163 (456)
                      .....+.+|.+.|++++|+| ++++||+|+.||.|++||+.+++....+.             +|...|.+++|+| +++
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            34556788999999999999 99999999999999999999877665543             5999999999999 788


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccE
Q 012799          164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV  243 (456)
Q Consensus       164 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  243 (456)
                      +|++++.||.|++||+.+++...  ...+...+.++.|.|..  .++.++++++.||.|++||+++++.+..+..|...|
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v  189 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTAD--VFNFEETVYSHHMSPVS--TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI  189 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEE--EEECSSCEEEEEECSSC--SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE
T ss_pred             EEEEEeCCCeEEEeeCCCCccce--eccCCCceeeeEeecCC--CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE
Confidence            99999999999999999887654  33467789999998842  355699999999999999999999999999999999


Q ss_pred             EEEEeCCCC--eEEEEeCCCcEEEEECCCCe-EEEEe---------------ecCCcceEEEEecCcceeeeccccCCCC
Q 012799          244 TCVKWGGDG--VIYTGSQDCTIKVWETTQGK-LIREL---------------KGHGHWVNSLALSTEYALRTGAFDHTGK  305 (456)
Q Consensus       244 ~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~  305 (456)
                      .+++|+|++  .+++++.||.|++||++++. .+..+               ..|...|.+++|+|+             
T Consensus       190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------  256 (408)
T 4a11_B          190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD-------------  256 (408)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT-------------
T ss_pred             EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC-------------
Confidence            999999998  58899999999999998765 33333               467888999999998             


Q ss_pred             ccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc----cccccEeEEEECCCCCEEEEEECC
Q 012799          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT----GHQQLVNHVYFSPDGQWVASASFD  381 (456)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~s~~~d  381 (456)
                                             +.++++++.||.|++||+...........    .....+........+..+++++.|
T Consensus       257 -----------------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
T 4a11_B          257 -----------------------GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG  313 (408)
T ss_dssp             -----------------------SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET
T ss_pred             -----------------------CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC
Confidence                                   66799999999999999877654322111    111122222233345567777889


Q ss_pred             CcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       382 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      |.|++||+.+++.+..+.+|...|.++                           +|+|++++|++|+.||.|++|
T Consensus       314 ~~i~v~d~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~l~s~~~dg~i~iw  361 (408)
T 4a11_B          314 STIAVYTVYSGEQITMLKGHYKTVDCC---------------------------VFQSNFQELYSGSRDCNILAW  361 (408)
T ss_dssp             TEEEEEETTTCCEEEEECCCSSCEEEE---------------------------EEETTTTEEEEEETTSCEEEE
T ss_pred             CEEEEEECcCCcceeeeccCCCeEEEE---------------------------EEcCCCCEEEEECCCCeEEEE
Confidence            999999999999999999999999999                           899999999999999999999

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.3e-40  Score=296.50  Aligned_cols=278  Identities=16%  Similarity=0.269  Sum_probs=244.1

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  186 (456)
                      |.++|.+++|+|||++++++..++.+.+|............+|...|.+++|+|++++|++++ ||.|++||+.+++...
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            567899999999999999988887777776665555555568999999999999999999999 9999999998876443


Q ss_pred             cccc----CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe--EEEEecCcCccEEEEEeCCCC-eEEEEeC
Q 012799          187 NPLS----GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGDG-VIYTGSQ  259 (456)
Q Consensus       187 ~~~~----~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~~~  259 (456)
                      ....    .|...|.+++|+|     +++++++++.||.|++||+++++  ....+..|...+.+++|+|++ .+++++.
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  161 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLP-----DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS  161 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECT-----TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             eeecccccCCCCcEEEEEEcC-----CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence            2222    7889999999999     88999999999999999999877  666778899999999999998 8999999


Q ss_pred             CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (456)
Q Consensus       260 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  339 (456)
                      ||.|++||+++++.+..+..|...+.+++++|+                                    +.++++++.|+
T Consensus       162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~~~l~~~~~dg  205 (337)
T 1gxr_A          162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISND------------------------------------GTKLWTGGLDN  205 (337)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTT------------------------------------SSEEEEEETTS
T ss_pred             CCcEEEEeCCCCceeeeeecccCceEEEEECCC------------------------------------CCEEEEEecCC
Confidence            999999999999999999999999999999998                                    56699999999


Q ss_pred             cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCC
Q 012799          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP  419 (456)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~  419 (456)
                      .|++||++......  ...+...+.+++|+|++++|++++.||.|++||+.+++.. .+..|...|.++           
T Consensus       206 ~i~~~d~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~-----------  271 (337)
T 1gxr_A          206 TVRSWDLREGRQLQ--QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSL-----------  271 (337)
T ss_dssp             EEEEEETTTTEEEE--EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEE-----------
T ss_pred             cEEEEECCCCceEe--eecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEE-----------
Confidence            99999987654322  2356788999999999999999999999999999988754 567899999999           


Q ss_pred             CCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                      +|+|++++|++++.||.|++|
T Consensus       272 ----------------~~~~~~~~l~~~~~dg~i~~~  292 (337)
T 1gxr_A          272 ----------------KFAYCGKWFVSTGKDNLLNAW  292 (337)
T ss_dssp             ----------------EECTTSSEEEEEETTSEEEEE
T ss_pred             ----------------EECCCCCEEEEecCCCcEEEE
Confidence                            899999999999999999998

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.7e-41  Score=299.96  Aligned_cols=254  Identities=22%  Similarity=0.373  Sum_probs=209.7

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCW  177 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vw  177 (456)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|++||+.++.  .+..+.+|...|.+++|++  ++++|++|+.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3567999999999999999999999999999999998764  4567889999999999986  48999999999999999


Q ss_pred             eCCCCCCc-cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE---EEEecCcCccEEEEEeCCC--
Q 012799          178 DPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHTLAVTCVKWGGD--  251 (456)
Q Consensus       178 d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~--  251 (456)
                      |+++++.. ...+.+|...|.+++|+|..   ++.+|++|+.|+.|++||++.+..   ...+.+|...+.+++|+|+  
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~---~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  163 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHD---YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV  163 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTT---TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCC---CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence            99887532 22467899999999999921   278999999999999999987632   3455788999999999987  


Q ss_pred             ---------------C-eEEEEeCCCcEEEEECCCC---eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHH
Q 012799          252 ---------------G-VIYTGSQDCTIKVWETTQG---KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (456)
Q Consensus       252 ---------------~-~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (456)
                                     + .|++|+.|+.|++||++.+   +.+..+.+|...|.+++|+|+...                 
T Consensus       164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~-----------------  226 (316)
T 3bg1_A          164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL-----------------  226 (316)
T ss_dssp             C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSC-----------------
T ss_pred             CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCC-----------------
Confidence                           3 7999999999999999765   467788899999999999997311                 


Q ss_pred             HHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC---CCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799          313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK---QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (456)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  389 (456)
                                     ++.+|++++.|++|++||+....   .....+..|...|.+++|+|++++|++++.||.|++|+.
T Consensus       227 ---------------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          227 ---------------PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             ---------------SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             ---------------CCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence                           13579999999999999976521   123345678899999999999999999999999999997


Q ss_pred             C
Q 012799          390 T  390 (456)
Q Consensus       390 ~  390 (456)
                      .
T Consensus       292 ~  292 (316)
T 3bg1_A          292 S  292 (316)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.2e-40  Score=303.62  Aligned_cols=277  Identities=15%  Similarity=0.122  Sum_probs=222.6

Q ss_pred             cccEEEEEECCCCCeEEEEECCC-------cEEEEeCCCCcce----------eEEecCCCCEEEEEEcCCCCEEEEEe-
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDT-------TVRLWDLNTQTPM----------FKCTGHKNWVLCIAWSADGKHLVSGS-  169 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~-------~v~vwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~s~~-  169 (456)
                      .-||++++|+||+++||+|+.+.       .|++|++......          ..+.+|...|.+++++  ++.+++|. 
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            45899999999999999998643       5999998765321          2456788889988874  55666654 


Q ss_pred             ----------CCCeEEEEeCCCCCCccc--------cccCcccceEEEEecccccCCCCCEEEEEe--CCCcEEEEECCC
Q 012799          170 ----------KAGELQCWDPQTGKPSGN--------PLSGHKKWITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSL  229 (456)
Q Consensus       170 ----------~dg~i~vwd~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~  229 (456)
                                .|+.+++|++........        ....+...+..++|+|     +|+++++++  .|++|++||+++
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-----Dg~~la~as~~~d~~i~iwd~~~  166 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-----EGTVAAIASSKVPAIMRIIDPSD  166 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-----TSSCEEEEESCSSCEEEEEETTT
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-----CCCEEEEEECCCCCEEEEeECCC
Confidence                      567899999876543211        1233455688999999     999887554  689999999999


Q ss_pred             CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEE--eecCCcceEEEEecCcceeeeccccCCCCc
Q 012799          230 RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE--LKGHGHWVNSLALSTEYALRTGAFDHTGKQ  306 (456)
Q Consensus       230 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  306 (456)
                      ++++..+. |...|.+++|+|+| ++++++ ++.+++|+..+++.+..  ...|...+.+++|+|+              
T Consensus       167 ~~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd--------------  230 (365)
T 4h5i_A          167 LTEKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIAD--------------  230 (365)
T ss_dssp             TEEEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEET--------------
T ss_pred             CcEEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCC--------------
Confidence            99998886 77889999999999 555555 56677888777766543  3568889999999998              


Q ss_pred             cCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC----cEEEEecCCCCCC---ccccccccccEeEEEECCCCCEEEEEE
Q 012799          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDF----TMFLWEPAVSKQP---KTRMTGHQQLVNHVYFSPDGQWVASAS  379 (456)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~s~~  379 (456)
                                            +..+++++.|+    .++.|++......   ...+.+|...|++++|+|||++||+|+
T Consensus       231 ----------------------g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          231 ----------------------DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             ----------------------TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred             ----------------------CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence                                  55588888877    5888886654322   234668899999999999999999999


Q ss_pred             CCCcEEEEeCCCCeEEEEE-ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          380 FDKSIKLWNGTTGKFVAVF-RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       380 ~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .||.|+|||+.+++++..+ .+|..+|+++                           +|+|||++|||||.|++||||
T Consensus       289 ~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v---------------------------~fSpdg~~laS~S~D~tvrvw  339 (365)
T 4h5i_A          289 NDNSIALVKLKDLSMSKIFKQAHSFAITEV---------------------------TISPDSTYVASVSAANTIHII  339 (365)
T ss_dssp             TTSCEEEEETTTTEEEEEETTSSSSCEEEE---------------------------EECTTSCEEEEEETTSEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEecCcccCCEEEE---------------------------EECCCCCEEEEEeCCCeEEEE
Confidence            9999999999999999875 7899999999                           999999999999999999998

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.2e-40  Score=332.90  Aligned_cols=270  Identities=21%  Similarity=0.306  Sum_probs=245.0

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      ..+.+.+|.+.|++++|+|++++||+|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~   84 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCC-CC-eEEE
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGG-DG-VIYT  256 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~-~l~~  256 (456)
                      .+++... .+.+|...|.+++|+|     ++.++++++.||.|++||+.++ .....+.+|...|.+++|+| ++ .+++
T Consensus        85 ~~~~~~~-~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  158 (814)
T 3mkq_A           85 NTGEKVV-DFEAHPDYIRSIAVHP-----TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS  158 (814)
T ss_dssp             TTCCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred             CCCcEEE-EEecCCCCEEEEEEeC-----CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence            9988765 5678999999999999     8999999999999999999987 77788889999999999999 66 8999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeecCC-cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799          257 GSQDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (456)
Q Consensus       257 ~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (456)
                      ++.||.|++||+.+++....+..+. ..+..++|+|.                                  +++.+++++
T Consensus       159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------------------~~~~~l~~~  204 (814)
T 3mkq_A          159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL----------------------------------PDKPYMITA  204 (814)
T ss_dssp             EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS----------------------------------TTCCEEEEE
T ss_pred             EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC----------------------------------CCCCEEEEE
Confidence            9999999999999888777776554 88999999982                                  126679999


Q ss_pred             eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       336 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      +.||.|++||+.... ....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+.++.|
T Consensus       205 ~~dg~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~  278 (814)
T 3mkq_A          205 SDDLTIKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT  278 (814)
T ss_dssp             CTTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEE
T ss_pred             eCCCEEEEEECCCCc-EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEE
Confidence            999999999976644 45667789999999999999999999999999999999999999999999999999943

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.8e-39  Score=315.62  Aligned_cols=343  Identities=17%  Similarity=0.269  Sum_probs=279.6

Q ss_pred             CcccEEEEEEeccc--------------eEEEeecccccccccCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCc
Q 012799           77 SVEKVLSIVYQPQA--------------VFRIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQT  141 (456)
Q Consensus        77 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~  141 (456)
                      +...+..+.|.|+.              .+.++..+.....+.+|.+.|.+++|+|+++ ++++++.|+.|++||+.+++
T Consensus       115 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~  194 (615)
T 1pgu_A          115 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK  194 (615)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred             ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc
Confidence            45667778888764              3445556677888999999999999999998 89999999999999999999


Q ss_pred             ceeEEecCCC---CEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCcccccc---CcccceEEEEecccccCCCCCEEE
Q 012799          142 PMFKCTGHKN---WVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSGNPLS---GHKKWITGISWEPVHLNAPCRRFV  214 (456)
Q Consensus       142 ~~~~~~~~~~---~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~  214 (456)
                      .+..+.+|..   .|.+++|+|+ +++|++++.||.|++||+++++.......   .|...|.+++|+      ++.+++
T Consensus       195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~l~  268 (615)
T 1pgu_A          195 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL------DSQKFA  268 (615)
T ss_dssp             EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES------SSSEEE
T ss_pred             eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc------CCCEEE
Confidence            9999999999   9999999999 99999999999999999999887764325   899999999996      457999


Q ss_pred             EEeCCCcEEEEECCCCeEEEEecCc----CccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEec
Q 012799          215 SASKDGDARIWDVSLRKCVICLSGH----TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS  290 (456)
Q Consensus       215 ~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  290 (456)
                      +++.||.|++||+++++.+..+..+    ...+.++.+.....+++++.||.|++||+.+++.+..+..|...|.++++ 
T Consensus       269 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-  347 (615)
T 1pgu_A          269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-  347 (615)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-
Confidence            9999999999999999999888766    46788888874449999999999999999999999999889888988888 


Q ss_pred             CcceeeeccccCCCCccCCh-----------------HHHH-----HHHH------------------------------
Q 012799          291 TEYALRTGAFDHTGKQYSSP-----------------EEMK-----KAAL------------------------------  318 (456)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~-----~~~~------------------------------  318 (456)
                      |+  +.++..+.....|...                 ....     ....                              
T Consensus       348 ~~--l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  425 (615)
T 1pgu_A          348 NP--LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN  425 (615)
T ss_dssp             TT--TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEET
T ss_pred             cC--cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeC
Confidence            66  4444444333332211                 0000     0000                              


Q ss_pred             ---------------------hhhhhccCCCCCEEEEEeC-CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE
Q 012799          319 ---------------------ERYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA  376 (456)
Q Consensus       319 ---------------------~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  376 (456)
                                           .....+... ++++++++. |+.|++||+.........+.+|...|++++|+|++++|+
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  504 (615)
T 1pgu_A          426 DDDLLILQSFTGDIIKSVRLNSPGSAVSLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA  504 (615)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCEEEEEEC-SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEE
T ss_pred             CCceEEEeccCCceeeecccCCCceEEEEc-CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEE
Confidence                                 000000000 667888888 899999997654322155678999999999999999999


Q ss_pred             EEECCCcEEEEeCCCCeEEEEEec-ccccEEEEEeeeeeeecCCCCceeeecccccccceeEec----------CCCeEE
Q 012799          377 SASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA----------DSRLLL  445 (456)
Q Consensus       377 s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----------dg~~l~  445 (456)
                      +++.||.|++||+.+++.+..+.+ |...|+++                           +|+|          ++++|+
T Consensus       505 ~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~---------------------------~~sp~~~~~~~~~~~~~~l~  557 (615)
T 1pgu_A          505 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAI---------------------------SWKPAEKGANEEEIEEDLVA  557 (615)
T ss_dssp             EEETTSCEEEEETTTTEEEECCSCCCSSCEEEE---------------------------EECCCC------CCSCCEEE
T ss_pred             EcCCCCeEEEeeCCCCcceeEeecCCCCceeEE---------------------------EEcCccccccccccCCCEEE
Confidence            999999999999999999999888 99999999                           8999          999999


Q ss_pred             EeeCCCceEEC
Q 012799          446 SGSKDSTLKVT  456 (456)
Q Consensus       446 s~s~Dg~v~iW  456 (456)
                      +|+.||.|+||
T Consensus       558 ~~~~dg~i~iw  568 (615)
T 1pgu_A          558 TGSLDTNIFIY  568 (615)
T ss_dssp             EEETTSCEEEE
T ss_pred             EEcCCCcEEEE
Confidence            99999999998

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.5e-40  Score=344.56  Aligned_cols=288  Identities=24%  Similarity=0.391  Sum_probs=260.4

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  180 (456)
                      ...+.+|.+.|++++|+|+|++||+|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~  687 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA  687 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ  259 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~  259 (456)
                      +++... .+.+|...|.+++|+|..   ++..+++|+.||.|++||+++++++..+.+|...|++++|+|++ .+++++.
T Consensus       688 ~~~~~~-~~~~~~~~v~~~~~~~~~---~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  763 (1249)
T 3sfz_A          688 TGKLVH-TYDEHSEQVNCCHFTNKS---NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA  763 (1249)
T ss_dssp             TCCEEE-EEECCSSCEEEEEECSSS---SCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred             CCceEE-EEcCCCCcEEEEEEecCC---CceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence            988765 577899999999999833   45689999999999999999999999999999999999999999 9999999


Q ss_pred             CCcEEEEECCCCeEEEEeecCC-------------cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799          260 DCTIKVWETTQGKLIRELKGHG-------------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (456)
Q Consensus       260 dg~i~iwd~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (456)
                      ||.|++||+++++....+....             ..+.+++|+|+                                  
T Consensus       764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----------------------------------  809 (1249)
T 3sfz_A          764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD----------------------------------  809 (1249)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT----------------------------------
T ss_pred             CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC----------------------------------
Confidence            9999999999988777664321             24555666665                                  


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEE
Q 012799          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (456)
Q Consensus       327 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  406 (456)
                        +..+++++ ++.+.+||+...........+|...|.+++|+|+++++++++.||.|++||+.++..+..+.+|.+.|.
T Consensus       810 --g~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~  886 (1249)
T 3sfz_A          810 --GDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH  886 (1249)
T ss_dssp             --SSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             --CCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceE
Confidence              56677766 789999998877766666668999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       407 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ++                           +|+|+|++|++++.||.|++|
T Consensus       887 ~v---------------------------~~spdg~~l~s~s~dg~v~vw  909 (1249)
T 3sfz_A          887 GV---------------------------MFSPDGSSFLTASDDQTIRVW  909 (1249)
T ss_dssp             EE---------------------------EECTTSSEEEEEETTSCEEEE
T ss_pred             EE---------------------------EECCCCCEEEEEeCCCeEEEE
Confidence            99                           899999999999999999998

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.8e-40  Score=299.57  Aligned_cols=288  Identities=16%  Similarity=0.236  Sum_probs=240.2

Q ss_pred             cccccccCCcccEEEEEECCC---CCeEEEEECCCcEEEEeCCC-Ccce-eEEecCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799           99 RCSATIAGHTEAVLSVAFSPD---GRQLASGSGDTTVRLWDLNT-QTPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~---~~~l~~~~~d~~v~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  173 (456)
                      +..+.+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|++++.||.
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence            455678999999999999999   69999999999999999987 4444 678899999999999999999999999999


Q ss_pred             EEEEeCCCCCCccccccCcccceEEEEe--cccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC
Q 012799          174 LQCWDPQTGKPSGNPLSGHKKWITGISW--EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD  251 (456)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  251 (456)
                      |++||+++++...  ...|...|.+++|  +|     ++.+|++++.||.|++||+++++.+..+..+. .+.++.+.++
T Consensus       110 v~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~-----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~  181 (368)
T 3mmy_A          110 AKMWDLSSNQAIQ--IAQHDAPVKTIHWIKAP-----NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYP  181 (368)
T ss_dssp             EEEEETTTTEEEE--EEECSSCEEEEEEEECS-----SCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETT
T ss_pred             EEEEEcCCCCcee--eccccCceEEEEEEeCC-----CCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCC
Confidence            9999999887654  6679999999999  66     88899999999999999999998888887654 6677777755


Q ss_pred             CeEEEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799          252 GVIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (456)
Q Consensus       252 ~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (456)
                       .+++++.++.+++|+++.........  ........+.+.+....                                ..
T Consensus       182 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~  228 (368)
T 3mmy_A          182 -MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN--------------------------------KP  228 (368)
T ss_dssp             -EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS--------------------------------CE
T ss_pred             -eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC--------------------------------CC
Confidence             78889999999999998765433321  23344455554443110                                12


Q ss_pred             CEEEEEeCCCcEEEEecCCCC--CCccccccccc------------cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799          330 ERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQ------------LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       330 ~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~------------~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  395 (456)
                      ..+++++.||.|++||++...  .....+.+|..            .|++++|+|++++|++|+.||.|++||+.+++++
T Consensus       229 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  308 (368)
T 3mmy_A          229 TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL  308 (368)
T ss_dssp             EEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             CeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEE
Confidence            339999999999999987654  23344556655            7999999999999999999999999999999999


Q ss_pred             EEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceE
Q 012799          396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLK  454 (456)
Q Consensus       396 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~  454 (456)
                      ..+.+|..+|.++                           +|+|+|++|++|+.|+..+
T Consensus       309 ~~~~~~~~~v~~~---------------------------~~s~~g~~l~~~s~d~~~~  340 (368)
T 3mmy_A          309 KTSEQLDQPISAC---------------------------CFNHNGNIFAYASSYDWSK  340 (368)
T ss_dssp             EECCCCSSCEEEE---------------------------EECTTSSCEEEEECCCSTT
T ss_pred             EEecCCCCCceEE---------------------------EECCCCCeEEEEecccccc
Confidence            9999999999999                           9999999999999998654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.1e-40  Score=309.75  Aligned_cols=306  Identities=12%  Similarity=0.214  Sum_probs=238.4

Q ss_pred             CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-----------ceeEEecCC------------CCEEEEEEcCCC
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHK------------NWVLCIAWSADG  162 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~  162 (456)
                      .|.+.|++++|+|+|++||+|+.||.|+|||+.+++           ....+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            478999999999999999999999999999998876           477888998            889999999998


Q ss_pred             --CEEEEEeCCCeEEEEeCCCCCCc---------------------------------------cccccCcccceEEEEe
Q 012799          163 --KHLVSGSKAGELQCWDPQTGKPS---------------------------------------GNPLSGHKKWITGISW  201 (456)
Q Consensus       163 --~~l~s~~~dg~i~vwd~~~~~~~---------------------------------------~~~~~~~~~~v~~~~~  201 (456)
                        .+|++++.|+.|++||+.++...                                       .....+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998764321                                       0124679999999999


Q ss_pred             cccccCCCCCEEEEEeCCCcEEEEECCC-CeEEE-------EecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCC
Q 012799          202 EPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVI-------CLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG  271 (456)
Q Consensus       202 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~  271 (456)
                      +|     ++++|++| .|+.|++||+++ ++.+.       .+.+|...|.+++|+|++  .+++|+.||.|++||++++
T Consensus       186 ~~-----~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  259 (447)
T 3dw8_B          186 NS-----DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS  259 (447)
T ss_dssp             CT-----TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred             cC-----CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence            99     88999998 799999999984 44444       256899999999999986  8999999999999999998


Q ss_pred             eE----EEEeecCCc------------ceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799          272 KL----IRELKGHGH------------WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (456)
Q Consensus       272 ~~----~~~~~~~~~------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (456)
                      +.    +..+..+..            .|.+++|+|+                                    +.+++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------------------------g~~l~~~  303 (447)
T 3dw8_B          260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS------------------------------------GRYMMTR  303 (447)
T ss_dssp             SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT------------------------------------SSEEEEE
T ss_pred             ccccceeeEeccCCCccccccccccCceEEEEEECCC------------------------------------CCEEEEe
Confidence            86    677877775            8999999998                                    5669999


Q ss_pred             eCCCcEEEEecCCCCCCcccccccccc---------------EeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          336 SDDFTMFLWEPAVSKQPKTRMTGHQQL---------------VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       336 ~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                      +. +.|++||++....+...+.+|...               +..++|+|++++|++|+.||.|++||+.+++.+ .+.+
T Consensus       304 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~  381 (447)
T 3dw8_B          304 DY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEA  381 (447)
T ss_dssp             ES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEEC
T ss_pred             eC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeee
Confidence            98 999999988756666667777542               234999999999999999999999999998876 4454


Q ss_pred             ccccEEEEEeee-e--eeec---CCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          401 HVGPVYQIRFEL-I--YCFR---YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       401 ~~~~v~~i~~~~-~--~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      |..+........ .  ....   .........+....+..++|+|++++||+++.++ +++|
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~  442 (447)
T 3dw8_B          382 SRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIF  442 (447)
T ss_dssp             CSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEE
T ss_pred             cccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeee
Confidence            543221100000 0  0000   0000111233455677789999999999998876 6665

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.4e-39  Score=300.56  Aligned_cols=273  Identities=24%  Similarity=0.415  Sum_probs=235.1

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  187 (456)
                      .++.|+||++ ++||+|. |++|+|||..+++....+.  +|...|++++|+|+|++|++|+.||.|++||+++++.+. 
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~-  183 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-  183 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE-
Confidence            4677999976 5787775 8999999999998776654  678889999999999999999999999999999988765 


Q ss_pred             cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEE
Q 012799          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKV  265 (456)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i  265 (456)
                      .+.+|...+.++.+++       ..+++|+.|+.+++||.... ..+..+.+|...+..+.+.+++ .+++++.||.+++
T Consensus       184 ~~~~h~~~v~~~s~~~-------~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i  256 (420)
T 4gga_A          184 NMTSHSARVGSLSWNS-------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV  256 (420)
T ss_dssp             EECCCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEeCCCCceEEEeeCC-------CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceE
Confidence            5788999999988854       79999999999999998764 5567788999999999999999 9999999999999


Q ss_pred             EECCCCe----EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE--EeCCC
Q 012799          266 WETTQGK----LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS--GSDDF  339 (456)
Q Consensus       266 wd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg  339 (456)
                      ||..+++    .+.....|...|.+++|+|..                                   ...+++  |+.|+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~-----------------------------------~~~la~~~gs~D~  301 (420)
T 4gga_A          257 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ-----------------------------------SNVLATGGGTSDR  301 (420)
T ss_dssp             EESSCCSSCSCCSEEECCCSSCEEEEEECTTC-----------------------------------TTEEEEEECTTTC
T ss_pred             EeeccccccceeeeeecccCCceeeeeeCCCc-----------------------------------ccEEEEEeecCCC
Confidence            9998765    345667788999999999873                                   344554  46799


Q ss_pred             cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEE--CCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeec
Q 012799          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (456)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  417 (456)
                      .|++||+.++.. ...+. +...+.++.|+|+++.+++++  .||.|+|||+.+++++..+.+|.+.|+++         
T Consensus       302 ~I~iwd~~t~~~-~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l---------  370 (420)
T 4gga_A          302 HIRIWNVCSGAC-LSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL---------  370 (420)
T ss_dssp             EEEEEETTTTEE-EEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEE---------
T ss_pred             EEEEEeCCcccc-ceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEE---------
Confidence            999999876543 33333 345688999999999988765  78999999999999999999999999999         


Q ss_pred             CCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                        +|+|||++|+|||.||+|+||
T Consensus       371 ------------------~~spdg~~l~S~s~D~tvriW  391 (420)
T 4gga_A          371 ------------------TMSPDGATVASAAADETLRLW  391 (420)
T ss_dssp             ------------------EECTTSSCEEEEETTTEEEEE
T ss_pred             ------------------EEcCCCCEEEEEecCCeEEEE
Confidence                              999999999999999999999

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1e-40  Score=306.31  Aligned_cols=257  Identities=25%  Similarity=0.411  Sum_probs=225.2

Q ss_pred             EEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCC
Q 012799          132 VRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR  211 (456)
Q Consensus       132 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  211 (456)
                      +..|+........++.+|.+.|++++|+|++++|++|+.||+|++||+.+++... .+..|...|.+++|+|     +++
T Consensus        48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~-~~~~h~~~v~~~~~s~-----~g~  121 (380)
T 3iz6_a           48 AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH-AIKLHCPWVMECAFAP-----NGQ  121 (380)
T ss_dssp             CCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE-EEECCCTTCCCCEECT-----TSS
T ss_pred             ccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce-EEecCCCCEEEEEECC-----CCC
Confidence            3345656666778899999999999999999999999999999999999887665 5778999999999999     999


Q ss_pred             EEEEEeCCCcEEEEECCCCe-------EEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEe-----
Q 012799          212 RFVSASKDGDARIWDVSLRK-------CVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIREL-----  277 (456)
Q Consensus       212 ~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~-----  277 (456)
                      ++++|+.|+.+++||+.+..       ....+.+|...+.++.|.|++  .|++|+.|++|++||+++++.+..+     
T Consensus       122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~  201 (380)
T 3iz6_a          122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP  201 (380)
T ss_dssp             EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred             EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC
Confidence            99999999999999986532       334567899999999999965  7999999999999999999988877     


Q ss_pred             ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc
Q 012799          278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT  357 (456)
Q Consensus       278 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  357 (456)
                      .+|...+.++++++.                                   +++++++|+.|+.|++||++........+.
T Consensus       202 ~~h~~~v~~~~~~~~-----------------------------------~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~  246 (380)
T 3iz6_a          202 SGHTADVLSLSINSL-----------------------------------NANMFISGSCDTTVRLWDLRITSRAVRTYH  246 (380)
T ss_dssp             SSCCSCEEEEEECSS-----------------------------------SCCEEEEEETTSCEEEEETTTTCCCCEEEC
T ss_pred             CCCccCeEEEEeecC-----------------------------------CCCEEEEEECCCeEEEEECCCCCcceEEEC
Confidence            568888999999763                                   256799999999999999987767777888


Q ss_pred             cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc-------cEEEEEeeeeeeecCCCCceeeecccc
Q 012799          358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-------PVYQIRFELIYCFRYPSNFYCVVDMSC  430 (456)
Q Consensus       358 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~i~~~~~~~~~~~~~~~~~~~~~~  430 (456)
                      +|...|++++|+|++++|++|+.||+|++||+++++.+..+..+..       .|.++                      
T Consensus       247 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~----------------------  304 (380)
T 3iz6_a          247 GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV----------------------  304 (380)
T ss_dssp             CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE----------------------
T ss_pred             CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE----------------------
Confidence            9999999999999999999999999999999999999888765432       24555                      


Q ss_pred             cccceeEecCCCeEEEeeCCCceEEC
Q 012799          431 CMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       431 ~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                           +|+|+|++|++|+.||.|+||
T Consensus       305 -----~~s~~g~~l~~g~~dg~i~vw  325 (380)
T 3iz6_a          305 -----AFSISGRLLFAGYSNGDCYVW  325 (380)
T ss_dssp             -----EECSSSSEEEEECTTSCEEEE
T ss_pred             -----EECCCCCEEEEEECCCCEEEE
Confidence                 999999999999999999998

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-38  Score=301.42  Aligned_cols=291  Identities=25%  Similarity=0.415  Sum_probs=250.9

Q ss_pred             cceEEEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEc--CCCCE
Q 012799           89 QAVFRIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS--ADGKH  164 (456)
Q Consensus        89 ~~~~~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~  164 (456)
                      +..+++|.  .+++..++.+|.+.|.+++|+|++ +|++|+.||+|++||+.+++.+..+.+|...|.+++|+  +++++
T Consensus       141 dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  219 (464)
T 3v7d_B          141 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY  219 (464)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEE
T ss_pred             CCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCE
Confidence            33455664  345678889999999999999988 89999999999999999999999999999999999999  57899


Q ss_pred             EEEEeCCCeEEEEeCCCCCCcc----------------------ccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799          165 LVSGSKAGELQCWDPQTGKPSG----------------------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (456)
Q Consensus       165 l~s~~~dg~i~vwd~~~~~~~~----------------------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i  222 (456)
                      +++|+.||.|++||+.++....                      ....+|...+.++.  +     +++++++++.||.|
T Consensus       220 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-----~~~~l~~~~~d~~i  292 (464)
T 3v7d_B          220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-----HGNIVVSGSYDNTL  292 (464)
T ss_dssp             EEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-----ETTEEEEEETTSCE
T ss_pred             EEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-----CCCEEEEEeCCCeE
Confidence            9999999999999998876431                      23566777787774  3     66899999999999


Q ss_pred             EEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecccc
Q 012799          223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (456)
Q Consensus       223 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  301 (456)
                      ++||+++++++..+.+|...|.+++|+|++ .+++|+.||.|++||+++++.+..+.+|...|.++.+++.         
T Consensus       293 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---------  363 (464)
T 3v7d_B          293 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK---------  363 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSS---------
T ss_pred             EEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCC---------
Confidence            999999999999999999999999999998 9999999999999999999999999999999999998743         


Q ss_pred             CCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC
Q 012799          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD  381 (456)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d  381 (456)
                                                   ++++++.||.|++||+........  ..|...+..++|+|++++|++|+ |
T Consensus       364 -----------------------------~l~s~s~dg~v~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~-d  411 (464)
T 3v7d_B          364 -----------------------------FLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNILVSGS-E  411 (464)
T ss_dssp             -----------------------------EEEEEETTSEEEEEETTTCCEEEE--EECTTCCCEEEEEECSSEEEEEE-T
T ss_pred             -----------------------------EEEEEeCCCcEEEEECCCCceeee--ecCCCCccEEEEEeCCCEEEEec-C
Confidence                                         599999999999999876543222  24566788899999999999998 9


Q ss_pred             CcEEEEeCCCCeEEEE-EecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          382 KSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       382 g~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      |.|++||+.+++++.. +..|...|.++                           +|+ ++.++++++.||.+.+|
T Consensus       412 g~i~iwd~~~g~~~~~~~~~~~~~v~~v---------------------------~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          412 NQFNIYNLRSGKLVHANILKDADQIWSV---------------------------NFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             TEEEEEETTTCCEEESCTTTTCSEEEEE---------------------------EEE-TTEEEEEEEETTEEEEE
T ss_pred             CeEEEEECCCCcEEehhhccCCCcEEEE---------------------------Eec-CCEEEEEEEeCCeEEEE
Confidence            9999999999999885 66889999999                           777 44566667778877765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-40  Score=315.11  Aligned_cols=281  Identities=11%  Similarity=0.064  Sum_probs=221.9

Q ss_pred             ccccCCcccEEEEEECCC------CCeEEEEECCCcEEEEeCCCCcc-----------eeEEecCCCCEEEEEEcCCCCE
Q 012799          102 ATIAGHTEAVLSVAFSPD------GRQLASGSGDTTVRLWDLNTQTP-----------MFKCTGHKNWVLCIAWSADGKH  164 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~------~~~l~~~~~d~~v~vwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~  164 (456)
                      .++.+|.+.|.+++|+|+      +.+||+++.||+|++||+.++..           ...+.+|...|++++|++++ .
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~  279 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T  279 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence            346788999999999997      57999999999999999986642           24678899999999999864 8


Q ss_pred             EEEEeCCCeEEEEeCCCCCCccccccCcccceEEE--EecccccCCCC-CEEEEEeCCCcEEEEECCCCeEEEEecCcCc
Q 012799          165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI--SWEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVICLSGHTL  241 (456)
Q Consensus       165 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  241 (456)
                      |++|+.||+|++||++++......+.+|...|.++  .|+|     ++ .+|++++.|++|++||++++++...+.+|..
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-----~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~  354 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-----FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR  354 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-----TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-----CCCeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence            99999999999999998755444578899999999  5666     76 7999999999999999998877666666643


Q ss_pred             --cEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799          242 --AVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (456)
Q Consensus       242 --~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (456)
                        .|.+++|+|++ .+++++.|++|++||++++..+..+.+|...|.+++|+|+                          
T Consensus       355 ~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~--------------------------  408 (524)
T 2j04_B          355 GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL--------------------------  408 (524)
T ss_dssp             CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS--------------------------
T ss_pred             cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC--------------------------
Confidence              57899999988 8899999999999999999888888899999999999998                          


Q ss_pred             hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc-----ccccEeEEEECCCCCEEEEEECCCcEEEEeCC-CC
Q 012799          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-----HQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TG  392 (456)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~-~~  392 (456)
                                +..|++|+.|++|++||+...  .......     +...+.+++|+|+++.+. .. | .+++|+.. ++
T Consensus       409 ----------g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~-~-~~~~~~~~~~g  473 (524)
T 2j04_B          409 ----------HPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-ID-S-SYEVYPLTVND  473 (524)
T ss_dssp             ----------CCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEE-EC-C-CCCCCC-----
T ss_pred             ----------CCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEE-cc-C-CceecccccCC
Confidence                      556999999999999997542  2221111     112578999999998553 22 2 34455443 57


Q ss_pred             eEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC---eEEEeeCCCceEEC
Q 012799          393 KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR---LLLSGSKDSTLKVT  456 (456)
Q Consensus       393 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~s~s~Dg~v~iW  456 (456)
                      ..+..+.+|...|+++                           +|+|+++   +||+|+.||.||||
T Consensus       474 ~~~~~l~gh~~~V~~V---------------------------afsp~~~~~~~lAsg~~~g~vrlw  513 (524)
T 2j04_B          474 VSKAKIDAHGINITCT---------------------------KWNETSAGGKCYAFSNSAGLLTLE  513 (524)
T ss_dssp             --------CCCSCCCE---------------------------EECCSTTTTTEEEEECTTSEEEEE
T ss_pred             cceeeecCCCceEEEE---------------------------ECCCCCCccHHHHhhccCceEEEE
Confidence            7888899999999999                           9999964   99999999999998

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9.8e-39  Score=289.13  Aligned_cols=254  Identities=20%  Similarity=0.354  Sum_probs=210.8

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      +...+.+|...|.+++|+|++.++++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus        68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred             ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcc-ccccCcccceEEEEeccccc-----CCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-
Q 012799          180 QTGKPSG-NPLSGHKKWITGISWEPVHL-----NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-  252 (456)
Q Consensus       180 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  252 (456)
                      ....... .....|...|.+++|+|...     .+.+.++++++.||.|++|| ...+....+.+|...|.+++|+|++ 
T Consensus       148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~  226 (343)
T 2xzm_R          148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGK  226 (343)
T ss_dssp             SSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             cCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCC
Confidence            7432211 12347888999999998321     11237899999999999999 4567777888999999999999999 


Q ss_pred             eEEEEeCCCcEEEEECCC-CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799          253 VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (456)
                      +|++|+.||.|++||+.. ......+. +...|.+++|+|+                                    +.+
T Consensus       227 ~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~------------------------------------~~~  269 (343)
T 2xzm_R          227 YIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPK------------------------------------LQW  269 (343)
T ss_dssp             EEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSS------------------------------------SCE
T ss_pred             EEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCC------------------------------------CCE
Confidence            999999999999999954 33334443 4567999999997                                    333


Q ss_pred             EEEEeCCCcEEEEecCCCCCCc-ccc-----------ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799          332 LVSGSDDFTMFLWEPAVSKQPK-TRM-----------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       332 l~~~~~dg~i~iwd~~~~~~~~-~~~-----------~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  392 (456)
                      ++ ++.|+.|++||+....... ..+           .+|...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus       270 la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          270 VA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             EE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             EE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            54 5568889999987654321 111           268888999999999999999999999999998654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-38  Score=301.00  Aligned_cols=281  Identities=25%  Similarity=0.427  Sum_probs=244.9

Q ss_pred             ccccccCCcccE-EEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799          100 CSATIAGHTEAV-LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (456)
Q Consensus       100 ~~~~l~~h~~~V-~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  178 (456)
                      ...++.+|.+.| .++.+  ++++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++ +|++|+.||+|++||
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd  189 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD  189 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence            345788999885 66666  57799999999999999999999999999999999999999988 999999999999999


Q ss_pred             CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe-----------------------EEEE
Q 012799          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-----------------------CVIC  235 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~  235 (456)
                      +++++... .+.+|...|.+++|.+..   ++.++++++.||.|++||++++.                       .+..
T Consensus       190 ~~~~~~~~-~~~~h~~~v~~l~~~~~~---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          190 IKKGCCTH-VFEGHNSTVRCLDIVEYK---NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             TTTTEEEE-EECCCSSCEEEEEEEESS---SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             CCCCcEEE-EECCCCCccEEEEEecCC---CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            99988665 577899999999998632   77899999999999999998765                       2556


Q ss_pred             ecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHH
Q 012799          236 LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (456)
Q Consensus       236 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (456)
                      +.+|...+.++...++ .+++++.||.|++||+++++.+..+.+|...|.+++++|+                       
T Consensus       266 ~~~~~~~v~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------  321 (464)
T 3v7d_B          266 LRGHMASVRTVSGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE-----------------------  321 (464)
T ss_dssp             ECCCSSCEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-----------------------
T ss_pred             ccCccceEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC-----------------------
Confidence            7788899988854422 9999999999999999999999999999999999999998                       


Q ss_pred             HHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  395 (456)
                                   +.++++|+.||.|++||++++ .....+.+|...|.+++|+  +++|++|+.||.|++||+.+++..
T Consensus       322 -------------~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~  385 (464)
T 3v7d_B          322 -------------RKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK  385 (464)
T ss_dssp             -------------TTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred             -------------CCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee
Confidence                         567999999999999998765 4566678999999999997  579999999999999999998876


Q ss_pred             EEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       396 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .... |...+..+                           +|++++++|++|+ ||.|+||
T Consensus       386 ~~~~-~~~~~~~~---------------------------~~~~~~~~l~~~~-dg~i~iw  417 (464)
T 3v7d_B          386 FSYH-HTNLSAIT---------------------------TFYVSDNILVSGS-ENQFNIY  417 (464)
T ss_dssp             EEEE-CTTCCCEE---------------------------EEEECSSEEEEEE-TTEEEEE
T ss_pred             eeec-CCCCccEE---------------------------EEEeCCCEEEEec-CCeEEEE
Confidence            6554 55566666                           8899999999999 9999998

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.6e-39  Score=295.24  Aligned_cols=239  Identities=28%  Similarity=0.466  Sum_probs=211.0

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  189 (456)
                      .|++++|+|+|++||+|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++...  .
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~--~  202 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL--T  202 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--E
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE--E
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999887653  2


Q ss_pred             cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------cCcCccEEEEEeCCCC-eEEEEeCCC
Q 012799          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-------SGHTLAVTCVKWGGDG-VIYTGSQDC  261 (456)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~-~l~~~~~dg  261 (456)
                      ..+...+.+++|+|.    ++.++++|+.||.|++||+++++.+..+       .+|...|.+++|+|++ .|++++.||
T Consensus       203 ~~~~~~v~~~~~~~~----~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~  278 (393)
T 1erj_A          203 LSIEDGVTTVAVSPG----DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR  278 (393)
T ss_dssp             EECSSCEEEEEECST----TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEcCCCcEEEEEECC----CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            335677999999873    6789999999999999999998887766       5789999999999999 899999999


Q ss_pred             cEEEEECCCC------------eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799          262 TIKVWETTQG------------KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (456)
Q Consensus       262 ~i~iwd~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (456)
                      .|++||+++.            .+...+.+|...|.+++++++                                    +
T Consensus       279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------------------------~  322 (393)
T 1erj_A          279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN------------------------------------D  322 (393)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGG------------------------------------G
T ss_pred             EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCC------------------------------------C
Confidence            9999999763            345567789999999999988                                    5


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC------CCCEEEEEECCCcEEEEeCCC
Q 012799          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------DGQWVASASFDKSIKLWNGTT  391 (456)
Q Consensus       330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp------~~~~l~s~~~dg~i~iwd~~~  391 (456)
                      .++++|+.|+.|++||+..+. ....+.+|...|.+++|++      ++++|++|+.||.|++|++..
T Consensus       323 ~~l~sgs~D~~v~iwd~~~~~-~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          323 EYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             CEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCe-EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            569999999999999976654 5566789999999999986      688999999999999999754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.8e-39  Score=301.68  Aligned_cols=269  Identities=29%  Similarity=0.534  Sum_probs=241.9

Q ss_pred             cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  184 (456)
                      .+|...|.++++  ++++|++|+.||.|++||+.+++....+.+|...|.+++|  ++++|++|+.||.|++||+.+++.
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence            467788999887  7899999999999999999999999999999999999999  788999999999999999999887


Q ss_pred             ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEE---EEecCcCccEEEEEeCCCCeEEEEeCCC
Q 012799          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV---ICLSGHTLAVTCVKWGGDGVIYTGSQDC  261 (456)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~l~~~~~dg  261 (456)
                      .. .+.+|...|.+++|++       ..+++|+.||.|++||+++++..   ..+.+|...|.++++. ...+++|+.||
T Consensus       206 ~~-~~~~h~~~v~~l~~~~-------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg  276 (435)
T 1p22_A          206 LN-TLIHHCEAVLHLRFNN-------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGDR  276 (435)
T ss_dssp             EE-EECCCCSCEEEEECCT-------TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE-TTEEEEEETTS
T ss_pred             EE-EEcCCCCcEEEEEEcC-------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC-CCEEEEEeCCC
Confidence            65 5678999999999965       59999999999999999887654   6678899999999993 23999999999


Q ss_pred             cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcE
Q 012799          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (456)
Q Consensus       262 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  341 (456)
                      .|++||+++++.+..+..|...+.++.++                                      +.++++|+.||.|
T Consensus       277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--------------------------------------~~~l~~g~~dg~i  318 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--------------------------------------DRLVVSGSSDNTI  318 (435)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEE--------------------------------------TTEEEEEETTSCE
T ss_pred             eEEEEECCcCcEEEEEcCCCCcEEEEEeC--------------------------------------CCEEEEEeCCCeE
Confidence            99999999999999999999999999885                                      3459999999999


Q ss_pred             EEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe---------EEEEEecccccEEEEEeee
Q 012799          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK---------FVAVFRGHVGPVYQIRFEL  412 (456)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~i~~~~  412 (456)
                      ++||++++ .....+.+|...|.+++|  ++++|++|+.||.|++||+.+++         .+..+.+|.+.|.++    
T Consensus       319 ~iwd~~~~-~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l----  391 (435)
T 1p22_A          319 RLWDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL----  391 (435)
T ss_dssp             EEEETTTC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE----
T ss_pred             EEEECCCC-CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE----
Confidence            99998765 456667889999999999  78899999999999999987766         788899999999988    


Q ss_pred             eeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                             +|  ++++|++|+.||+|+||
T Consensus       392 -----------------------~~--~~~~l~s~s~Dg~i~iw  410 (435)
T 1p22_A          392 -----------------------QF--DEFQIVSSSHDDTILIW  410 (435)
T ss_dssp             -----------------------EE--CSSCEEECCSSSEEEEE
T ss_pred             -----------------------Ee--CCCEEEEEeCCCEEEEE
Confidence                                   77  78999999999999998

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.9e-39  Score=285.53  Aligned_cols=260  Identities=19%  Similarity=0.310  Sum_probs=210.9

Q ss_pred             eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (456)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i  222 (456)
                      ..+.+|...|.+++|+|+|++|++|+.|++|++||+..+. .....+.+|...|.+++|++..   ++++|++|+.|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~---~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK---FGTILASCSYDGKV   79 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG---GCSEEEEEETTTEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC---cCCEEEEEcCCCEE
Confidence            4567899999999999999999999999999999997542 2233678999999999997621   37899999999999


Q ss_pred             EEEECCCCe--EEEEecCcCccEEEEEeCCC--C-eEEEEeCCCcEEEEECCCCe--EEEEeecCCcceEEEEecCccee
Q 012799          223 RIWDVSLRK--CVICLSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEYAL  295 (456)
Q Consensus       223 ~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~  295 (456)
                      ++||+++++  .+..+.+|...|.+++|+|+  + .|++++.||.|++||++++.  ....+.+|...|.+++|+|+...
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  159 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence            999998774  56677889999999999997  6 89999999999999998763  24566789999999999987421


Q ss_pred             eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC---CccccccccccEeEEEECCCC
Q 012799          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSPDG  372 (456)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~sp~~  372 (456)
                      ....                       ......+.+|++|+.|+.|++||++....   ....+.+|...|.+++|+|++
T Consensus       160 ~~~~-----------------------~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~  216 (297)
T 2pm7_B          160 EDGE-----------------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV  216 (297)
T ss_dssp             ---------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred             cccc-----------------------CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC
Confidence            1000                       00011356899999999999999876543   344678999999999999984


Q ss_pred             ---CEEEEEECCCcEEEEeCCCCe---EEEEE--ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeE
Q 012799          373 ---QWVASASFDKSIKLWNGTTGK---FVAVF--RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL  444 (456)
Q Consensus       373 ---~~l~s~~~dg~i~iwd~~~~~---~~~~~--~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  444 (456)
                         ++|++|+.||+|++||+.++.   ....+  ..|...|.++                           +|+|+|++|
T Consensus       217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~g~~l  269 (297)
T 2pm7_B          217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA---------------------------SWSLSGNVL  269 (297)
T ss_dssp             SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEE---------------------------EECSSSCCE
T ss_pred             CCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEE---------------------------EECCCCCEE
Confidence               899999999999999987743   12233  4677889998                           999999999


Q ss_pred             EEeeCCCceEEC
Q 012799          445 LSGSKDSTLKVT  456 (456)
Q Consensus       445 ~s~s~Dg~v~iW  456 (456)
                      ++++.||+|+||
T Consensus       270 as~~~D~~v~lw  281 (297)
T 2pm7_B          270 ALSGGDNKVTLW  281 (297)
T ss_dssp             EEEETTSCEEEE
T ss_pred             EEEcCCCcEEEE
Confidence            999999999999

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.4e-38  Score=285.38  Aligned_cols=274  Identities=23%  Similarity=0.387  Sum_probs=231.7

Q ss_pred             EEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      .++|+||+++ +||+| .|++|+|||+.+++.+..+.  +|...|++++|+|++++|++|+.||+|++||+++++.+. .
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~-~  104 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-N  104 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-E
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE-E
Confidence            5679999986 77776 48999999999999887664  678889999999999999999999999999999998765 5


Q ss_pred             ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEE
Q 012799          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW  266 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iw  266 (456)
                      ..+|...+.++.+.       +..+++++.++.+++|+.... ..+..+.+|...+.++.+.+++ .+++++.||.|++|
T Consensus       105 ~~~h~~~~~~~~~~-------~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  177 (318)
T 4ggc_A          105 MTSHSARVGSLSWN-------SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW  177 (318)
T ss_dssp             EECCSSCEEEEEEE-------TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ecCccceEEEeecC-------CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence            77888888877664       479999999999999998765 4566778999999999999998 99999999999999


Q ss_pred             ECCCCeE----EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEE
Q 012799          267 ETTQGKL----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (456)
Q Consensus       267 d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  342 (456)
                      |+++++.    ......+...+..+.+.+....                                 .-.+++++.++.|+
T Consensus       178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------------------------------~~~~~~~~~~~~i~  224 (318)
T 4ggc_A          178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN---------------------------------VLATGGGTSDRHIR  224 (318)
T ss_dssp             ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTT---------------------------------EEEEEECTTTCEEE
T ss_pred             ECCCCcccccceeeecccCCceEEEEecCCCCc---------------------------------EEEEEecCCCCEEE
Confidence            9987653    3444557778899988876311                                 01245677899999


Q ss_pred             EEecCCCCCCccccccccccEeEEEECCCCCEEEEEE--CCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCC
Q 012799          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS  420 (456)
Q Consensus       343 iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~  420 (456)
                      +||.......  ....+...+..+.|+|+++.+++++  .||.|++||+.+++++..+.+|.+.|+++            
T Consensus       225 lwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l------------  290 (318)
T 4ggc_A          225 IWNVCSGACL--SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL------------  290 (318)
T ss_dssp             EEETTTCCEE--EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEE------------
T ss_pred             EEeccccccc--ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEE------------
Confidence            9997655432  3345667799999999999877655  79999999999999999999999999999            


Q ss_pred             CceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       421 ~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                     +|+|||++|+|||.||+|+||
T Consensus       291 ---------------~~spdg~~l~S~s~D~~v~iW  311 (318)
T 4ggc_A          291 ---------------TMSPDGATVASAAADETLRLW  311 (318)
T ss_dssp             ---------------EECTTSSCEEEEETTTEEEEE
T ss_pred             ---------------EEcCCCCEEEEEecCCeEEEE
Confidence                           999999999999999999999

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=9e-39  Score=285.72  Aligned_cols=249  Identities=30%  Similarity=0.548  Sum_probs=223.5

Q ss_pred             cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC
Q 012799          141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (456)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg  220 (456)
                      .....+.+|...|++++|+|++++|++++.||.|++|++.+++... .+.+|...|.+++|+|     ++++|++++.|+
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~s~~~d~   87 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSS-----DSNLLVSASDDK   87 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTS
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch-hhccCCCceEEEEEcC-----CCCEEEEECCCC
Confidence            4456778999999999999999999999999999999999887654 5778999999999999     899999999999


Q ss_pred             cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecc
Q 012799          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (456)
Q Consensus       221 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  299 (456)
                      .|++||+++++++..+.+|...|.+++|+|++ .+++++.||.|++||+++++.+..+..|..++.+++++|+       
T Consensus        88 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-------  160 (312)
T 4ery_A           88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-------  160 (312)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-------
T ss_pred             EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC-------
Confidence            99999999999999999999999999999998 9999999999999999999999999999999999999998       


Q ss_pred             ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEE
Q 012799          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (456)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~  379 (456)
                                                   +.++++++.|+.|++||++...........+...+..++|+|++++|++++
T Consensus       161 -----------------------------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  211 (312)
T 4ery_A          161 -----------------------------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  211 (312)
T ss_dssp             -----------------------------SSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred             -----------------------------CCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence                                         566999999999999998876654444556778899999999999999999


Q ss_pred             CCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeE-ecCCCeEEEeeCCCceEEC
Q 012799          380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW-SADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       380 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .||.|++||+.+++.+..+.+|......+..                         .| .+++++|++|+.||.|++|
T Consensus       212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~l~sg~~dg~i~vw  264 (312)
T 4ery_A          212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA-------------------------NFSVTGGKWIVSGSEDNLVYIW  264 (312)
T ss_dssp             TTTEEEEEETTTTEEEEEECSSCCSSSCCCE-------------------------EEECSSSCEEEECCTTSCEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEEecCCceEEEEE-------------------------EEEeCCCcEEEEECCCCEEEEE
Confidence            9999999999999999999888765433311                         33 4678999999999999998

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.9e-39  Score=338.03  Aligned_cols=311  Identities=23%  Similarity=0.367  Sum_probs=271.5

Q ss_pred             CcccEEEEEEeccc----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee
Q 012799           77 SVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF  144 (456)
Q Consensus        77 ~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~  144 (456)
                      +...+..+.|+|+.          .+++|..  +.+..++.+|.+.|.+++|+|++++||+|+.||+|++||+.+++.+.
T Consensus       614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~  693 (1249)
T 3sfz_A          614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH  693 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            56778888888865          3445543  45678899999999999999999999999999999999999999999


Q ss_pred             EEecCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799          145 KCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (456)
Q Consensus       145 ~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i  222 (456)
                      .+.+|...|.+++|+|  ++.++++|+.||.|++||+.+++... .+.+|...|.+++|+|     +++.+++++.||.|
T Consensus       694 ~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~sp-----~~~~l~s~s~dg~v  767 (1249)
T 3sfz_A          694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN-TMFGHTNSVNHCRFSP-----DDELLASCSADGTL  767 (1249)
T ss_dssp             EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE-EECCCSSCEEEEEECS-----STTEEEEEESSSEE
T ss_pred             EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh-eecCCCCCEEEEEEec-----CCCEEEEEECCCeE
Confidence            9999999999999999  56689999999999999999988665 5778999999999999     89999999999999


Q ss_pred             EEEECCCCeEEEEe-------------------------------------------------------cCcCccEEEEE
Q 012799          223 RIWDVSLRKCVICL-------------------------------------------------------SGHTLAVTCVK  247 (456)
Q Consensus       223 ~iwd~~~~~~~~~~-------------------------------------------------------~~~~~~v~~~~  247 (456)
                      ++||+.+++....+                                                       .+|...|.+++
T Consensus       768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~  847 (1249)
T 3sfz_A          768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD  847 (1249)
T ss_dssp             EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred             EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence            99999876544332                                                       15678899999


Q ss_pred             eCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799          248 WGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (456)
Q Consensus       248 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (456)
                      |+|++ .+++++.||.|++||+.++..+..+.+|...|.+++|+|+                                  
T Consensus       848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd----------------------------------  893 (1249)
T 3sfz_A          848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD----------------------------------  893 (1249)
T ss_dssp             ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTT----------------------------------
T ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCC----------------------------------
Confidence            99999 9999999999999999999999999999999999999998                                  


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCC------------------------------------ccccccccccEeEEEECC
Q 012799          327 NAPERLVSGSDDFTMFLWEPAVSKQP------------------------------------KTRMTGHQQLVNHVYFSP  370 (456)
Q Consensus       327 ~~~~~l~~~~~dg~i~iwd~~~~~~~------------------------------------~~~~~~~~~~v~~~~~sp  370 (456)
                        +..+++++.|+.|++||+......                                    ......+...+.+++|+|
T Consensus       894 --g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp  971 (1249)
T 3sfz_A          894 --GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP  971 (1249)
T ss_dssp             --SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT
T ss_pred             --CCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC
Confidence              566999999999999996431100                                    000112345799999999


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCC
Q 012799          371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD  450 (456)
Q Consensus       371 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D  450 (456)
                      +++++++|+.||.|++||+.+++.+..+.+|...|.++                           +|+|+|++|++++.|
T Consensus       972 ~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l---------------------------~~s~dg~~l~s~~~d 1024 (1249)
T 3sfz_A          972 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI---------------------------QFTADGKTLISSSED 1024 (1249)
T ss_dssp             TSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCE---------------------------EECSSSSCEEEECSS
T ss_pred             CCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEE---------------------------EECCCCCEEEEEcCC
Confidence            99999999999999999999999999999999999999                           899999999999999


Q ss_pred             CceEEC
Q 012799          451 STLKVT  456 (456)
Q Consensus       451 g~v~iW  456 (456)
                      |.|++|
T Consensus      1025 g~i~vw 1030 (1249)
T 3sfz_A         1025 SVIQVW 1030 (1249)
T ss_dssp             SBEEEE
T ss_pred             CEEEEE
Confidence            999998

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.4e-38  Score=294.41  Aligned_cols=286  Identities=30%  Similarity=0.528  Sum_probs=252.4

Q ss_pred             ceEEEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEE
Q 012799           90 AVFRIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS  167 (456)
Q Consensus        90 ~~~~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  167 (456)
                      ..+++|.  .+++..++.+|.+.|.+++|+  ++++++|+.||+|++||+.+++.+..+.+|...|.+++|+  ++.+++
T Consensus       139 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s  214 (445)
T 2ovr_B          139 NTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVS  214 (445)
T ss_dssp             SCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEE
T ss_pred             CcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEE
Confidence            3445554  356778899999999999997  5699999999999999999999999999999999999995  568999


Q ss_pred             EeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEE
Q 012799          168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK  247 (456)
Q Consensus       168 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  247 (456)
                      |+.||.|++||+.+++... .+.+|...|.++.|       ++..+++|+.||.|++||+++++++..+.+|...|.+++
T Consensus       215 ~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  286 (445)
T 2ovr_B          215 GSRDATLRVWDIETGQCLH-VLMGHVAAVRCVQY-------DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ  286 (445)
T ss_dssp             EETTSEEEEEESSSCCEEE-EEECCSSCEEEEEE-------CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE
T ss_pred             EeCCCEEEEEECCCCcEEE-EEcCCcccEEEEEE-------CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEE
Confidence            9999999999999988765 56789999999998       457899999999999999999999999999999999999


Q ss_pred             eCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799          248 WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (456)
Q Consensus       248 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (456)
                      ++ ...+++++.||.|++||+++++.+..+..|...+.++.+++                                    
T Consensus       287 ~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~------------------------------------  329 (445)
T 2ovr_B          287 FD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD------------------------------------  329 (445)
T ss_dssp             EC-SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET------------------------------------
T ss_pred             EC-CCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC------------------------------------
Confidence            93 23999999999999999999999999999999888888753                                    


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCcccccc---ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE-----e
Q 012799          328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTG---HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-----R  399 (456)
Q Consensus       328 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~  399 (456)
                        +++++++.||.|++||++... ....+..   |...|++++|+  +++|++|+.||.|++||+.+++.+..+     .
T Consensus       330 --~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  404 (445)
T 2ovr_B          330 --NILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG  404 (445)
T ss_dssp             --TEEEEEETTSCEEEEETTTCC-EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTG
T ss_pred             --CEEEEEeCCCeEEEEECCCCc-EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccC
Confidence              459999999999999987654 3444443   88899999995  679999999999999999999999888     4


Q ss_pred             cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCc----eEEC
Q 012799          400 GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST----LKVT  456 (456)
Q Consensus       400 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~----v~iW  456 (456)
                      +|.+.|+++                           +|+|++.+|++|+.||+    |.||
T Consensus       405 ~~~~~v~~~---------------------------~~s~~~~~la~~~~dg~~~~~l~v~  438 (445)
T 2ovr_B          405 GSGGVVWRI---------------------------RASNTKLVCAVGSRNGTEETKLLVL  438 (445)
T ss_dssp             GGTCEEEEE---------------------------EECSSEEEEEEECSSSSSCCEEEEE
T ss_pred             CCCceEEEE---------------------------EecCCEEEEEEcccCCCCccEEEEE
Confidence            788899999                           89999999999999998    8876

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=7.4e-38  Score=294.01  Aligned_cols=275  Identities=27%  Similarity=0.525  Sum_probs=244.6

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      ..+.+.+|.+.|.. ++++++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+  ++++++|+.||.|++||+
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~  186 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA  186 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence            34678899987643 355578999999999999999999999999999999999999997  669999999999999999


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeC
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ  259 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~  259 (456)
                      .+++... .+.+|...|.++.|++       +.+++|+.||.|++||+++++.+..+.+|...|.++++. ...+++++.
T Consensus       187 ~~~~~~~-~~~~h~~~v~~~~~~~-------~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~  257 (445)
T 2ovr_B          187 ETGECIH-TLYGHTSTVRCMHLHE-------KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-GRRVVSGAY  257 (445)
T ss_dssp             TTTEEEE-EECCCSSCEEEEEEET-------TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC-SSCEEEEET
T ss_pred             CcCcEEE-EECCCCCcEEEEEecC-------CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC-CCEEEEEcC
Confidence            9987765 5778999999999954       689999999999999999999999999999999999993 238999999


Q ss_pred             CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (456)
Q Consensus       260 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  339 (456)
                      ||.|++||+++++.+..+..|...+.++.+.                                      +.++++++.|+
T Consensus       258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--------------------------------------~~~l~~~~~d~  299 (445)
T 2ovr_B          258 DFMVKVWDPETETCLHTLQGHTNRVYSLQFD--------------------------------------GIHVVSGSLDT  299 (445)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--------------------------------------SSEEEEEETTS
T ss_pred             CCEEEEEECCCCcEeEEecCCCCceEEEEEC--------------------------------------CCEEEEEeCCC
Confidence            9999999999999999999999999999983                                      45699999999


Q ss_pred             cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec---ccccEEEEEeeeeeee
Q 012799          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQIRFELIYCF  416 (456)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~  416 (456)
                      .|++||+++.. ....+.+|...+.++.+  ++++|++|+.||.|++||+.+++.+..+.+   |..+|.++        
T Consensus       300 ~i~i~d~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~--------  368 (445)
T 2ovr_B          300 SIRVWDVETGN-CIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL--------  368 (445)
T ss_dssp             CEEEEETTTCC-EEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE--------
T ss_pred             eEEEEECCCCC-EEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEE--------
Confidence            99999987654 55667789999998887  467999999999999999999999999986   88899998        


Q ss_pred             cCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                         +|+  +++|++|+.||.|+||
T Consensus       369 -------------------~~~--~~~l~s~~~dg~v~iw  387 (445)
T 2ovr_B          369 -------------------QFN--KNFVITSSDDGTVKLW  387 (445)
T ss_dssp             -------------------EEC--SSEEEEEETTSEEEEE
T ss_pred             -------------------EEC--CCEEEEEeCCCeEEEE
Confidence                               664  6899999999999998

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.1e-38  Score=289.65  Aligned_cols=291  Identities=18%  Similarity=0.290  Sum_probs=221.1

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC----cceeEEecCCCCEEEEEEcC--CCCEEEEEeCCCeE
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----TPMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGEL  174 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i  174 (456)
                      .+.+.+|.+.|++++|+|++++||+|+.||.|++||+.++    +....+.+|...|.+++|+|  ++++|++++.||.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            3456899999999999999999999999999999999876    35566789999999999999  69999999999999


Q ss_pred             EEEeCCCCCC--------ccccccCcccceEEEEecccccCCC--CCEEEEEeCCCcEEEEECCCCeEEEEe--------
Q 012799          175 QCWDPQTGKP--------SGNPLSGHKKWITGISWEPVHLNAP--CRRFVSASKDGDARIWDVSLRKCVICL--------  236 (456)
Q Consensus       175 ~vwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~--------  236 (456)
                      ++||+++++.        ....+..|...|.+++|+|     +  +.++++++.||.|++||+++++.+..+        
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  158 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-----AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV  158 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-----GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcC-----CCCCcEEEEecCCCcEEEecCCChHHhccccccccccc
Confidence            9999988742        1224668999999999999     6  899999999999999999876543222        


Q ss_pred             -----cCcCccEEEEEeCCC---C-eEEEEeCCCcEEEEECCCCeE--EEEeecCCcceEEEEecCcceeeeccccCCCC
Q 012799          237 -----SGHTLAVTCVKWGGD---G-VIYTGSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (456)
Q Consensus       237 -----~~~~~~v~~~~~~~~---~-~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  305 (456)
                           ..|...+.+++|+|+   + .+++++.++.+.+|+...++.  +..+.+|...|.+++|+|++.-          
T Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~----------  228 (351)
T 3f3f_A          159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR----------  228 (351)
T ss_dssp             CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC----------
T ss_pred             cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC----------
Confidence                 157788999999996   5 999999999999998887765  6777889999999999998300          


Q ss_pred             ccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE----ECC
Q 012799          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA----SFD  381 (456)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~----~~d  381 (456)
                                            ...++++++.||.|++||++....... ...+.........++....++.+    ...
T Consensus       229 ----------------------~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (351)
T 3f3f_A          229 ----------------------WYQLIATGCKDGRIRIFKITEKLSPLA-SEESLTNSNMFDNSADVDMDAQGRSDSNTE  285 (351)
T ss_dssp             ----------------------SSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred             ----------------------cceEEEEEcCCCeEEEEeCCCCcCccc-cCCcccceeccCCCcccccccccccccccc
Confidence                                  015699999999999999876543332 22223333344444444444433    344


Q ss_pred             CcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       382 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +.+.+|+....+.+..+.+|...|+++                           +|+|++++|++|+.||.|+||
T Consensus       286 ~~~~~~~~~~~~~~~~~~~h~~~v~~~---------------------------~~s~~~~~l~s~~~dg~v~iw  333 (351)
T 3f3f_A          286 EKAELQSNLQVELLSEHDDHNGEVWSV---------------------------SWNLTGTILSSAGDDGKVRLW  333 (351)
T ss_dssp             -----CCSEEEEEEEEECTTSSCEEEE---------------------------EECSSSCCEEEEETTSCEEEE
T ss_pred             eeeeecccccccEEEEEecccccEEEE---------------------------EEcCCCCEEEEecCCCcEEEE
Confidence            567777777788899999999999999                           999999999999999999999

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6e-37  Score=277.35  Aligned_cols=277  Identities=25%  Similarity=0.393  Sum_probs=235.9

Q ss_pred             cCcccEEEEEEeccc-----------eEEEeecc-------cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeC
Q 012799           76 VSVEKVLSIVYQPQA-----------VFRIRPVN-------RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL  137 (456)
Q Consensus        76 ~~~~~~~~~~~~~~~-----------~~~~~~~~-------~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~  137 (456)
                      .|...+..+.|.|+.           .+++|...       .+.+++.+|...|.+++|+|++++|++|+.|+.|++|+.
T Consensus        36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~  115 (340)
T 4aow_A           36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL  115 (340)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEee
Confidence            366778888888752           24555432       245778999999999999999999999999999999999


Q ss_pred             CCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEe
Q 012799          138 NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS  217 (456)
Q Consensus       138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~  217 (456)
                      ...........+...+..+.+++++++|++++.|+.+++||............+|...+..++|.+..   ....+++++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~s~~  192 (340)
T 4aow_A          116 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS---SNPIIVSCG  192 (340)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS---SSCEEEEEE
T ss_pred             cccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC---CCcEEEEEc
Confidence            99988888888999999999999999999999999999999987766555677899999999998733   456889999


Q ss_pred             CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceee
Q 012799          218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (456)
Q Consensus       218 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  296 (456)
                      .|+.|++||+++++.+..+.+|...|++++|+|++ .|++|+.||.|++||+++.+.+..+.. ...+.++.++|+.   
T Consensus       193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~---  268 (340)
T 4aow_A          193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNR---  268 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS---
T ss_pred             CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCC---
Confidence            99999999999999999999999999999999999 999999999999999999999988874 4678999998862   


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC--------CccccccccccEeEEEE
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--------PKTRMTGHQQLVNHVYF  368 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~v~~~~~  368 (456)
                                                        .+++++.|+.|++||++....        ......+|...|++++|
T Consensus       269 ----------------------------------~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  314 (340)
T 4aow_A          269 ----------------------------------YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW  314 (340)
T ss_dssp             ----------------------------------SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEE
T ss_pred             ----------------------------------ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEE
Confidence                                              367788899999999765421        12234578899999999


Q ss_pred             CCCCCEEEEEECCCcEEEEeCCCCe
Q 012799          369 SPDGQWVASASFDKSIKLWNGTTGK  393 (456)
Q Consensus       369 sp~~~~l~s~~~dg~i~iwd~~~~~  393 (456)
                      +|+|++|++|+.||.|+|||+.+|+
T Consensus       315 s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          315 SADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            9999999999999999999999885

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3e-39  Score=288.79  Aligned_cols=263  Identities=20%  Similarity=0.271  Sum_probs=207.7

Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC-ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEE
Q 012799          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (456)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~  223 (456)
                      .+.+|.+.|++++|+|+|++|++|+.|++|++||++++.. ....+.+|...|.+++|++..   ++++|++|+.|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~---~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM---YGNILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG---GSSCEEEEETTSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC---CCCEEEEEECCCEEE
Confidence            3568999999999999999999999999999999987753 223577999999999997621   378999999999999


Q ss_pred             EEECCCC--eEEEEecCcCccEEEEEeCCC--C-eEEEEeCCCcEEEEECCCCeE---EEEeecCCcceEEEEecCccee
Q 012799          224 IWDVSLR--KCVICLSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQGKL---IRELKGHGHWVNSLALSTEYAL  295 (456)
Q Consensus       224 iwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~  295 (456)
                      +||++++  +....+.+|...|.+++|+|+  + .|++|+.||.|++||++.+..   ...+..|...+.+++|+|+...
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            9999887  466778899999999999997  5 899999999999999987632   3445678888999999987321


Q ss_pred             eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC--CCccccccccccEeEEEECCCC-
Q 012799          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQLVNHVYFSPDG-  372 (456)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~sp~~-  372 (456)
                      .... +                  .........+.+|++|+.|+.|++||++...  .....+.+|...|.+++|+|++ 
T Consensus       165 ~~~~-~------------------~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~  225 (316)
T 3bg1_A          165 GSLI-D------------------HPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG  225 (316)
T ss_dssp             -------------------------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred             cccc-c------------------cccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence            0000 0                  0000011124679999999999999986543  2455678999999999999986 


Q ss_pred             ---CEEEEEECCCcEEEEeCCCC---e-EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEE
Q 012799          373 ---QWVASASFDKSIKLWNGTTG---K-FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL  445 (456)
Q Consensus       373 ---~~l~s~~~dg~i~iwd~~~~---~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  445 (456)
                         ++|++|+.||+|++|++.+.   + ....+..|...|+++                           +|+|+|++|+
T Consensus       226 ~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v---------------------------~~sp~g~~la  278 (316)
T 3bg1_A          226 LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHV---------------------------SWSITANILA  278 (316)
T ss_dssp             CSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEE---------------------------EECTTTCCEE
T ss_pred             CCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEE---------------------------EEcCCCCEEE
Confidence               88999999999999998762   1 233456788999999                           9999999999


Q ss_pred             EeeCCCceEEC
Q 012799          446 SGSKDSTLKVT  456 (456)
Q Consensus       446 s~s~Dg~v~iW  456 (456)
                      +|+.||+|+||
T Consensus       279 s~~~D~~v~lw  289 (316)
T 3bg1_A          279 VSGGDNKVTLW  289 (316)
T ss_dssp             EEESSSCEEEE
T ss_pred             EEcCCCeEEEE
Confidence            99999999999

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-38  Score=290.20  Aligned_cols=257  Identities=23%  Similarity=0.405  Sum_probs=218.8

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCC--CCcceeEEecCCCCEEEEEEcCC--CCEEEEEeCCCeE
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGEL  174 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i  174 (456)
                      ++...+.+|.+.|++++|+|++++||+|+.||.|++||+.  +++.+..+.+|...|++++|+++  +++|++++.||.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            3567789999999999999999999999999999999998  55677788899999999999987  9999999999999


Q ss_pred             EEEeCCCCCC-ccccccCcccceEEEEecccccCCC--CCEEEEEeCCCcEEEEECCCC--eEEEEecCcCccEEEEEeC
Q 012799          175 QCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAP--CRRFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWG  249 (456)
Q Consensus       175 ~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~  249 (456)
                      ++||+.+++. .......|...|.+++|+|     +  +.++++++.||.|++||++..  .....+..|...|.+++|+
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~  156 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAP-----HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA  156 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECC-----GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEEC
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCC-----CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEc
Confidence            9999998862 2225667899999999999     6  889999999999999999877  3455667899999999999


Q ss_pred             C-------------CC-eEEEEeCCCcEEEEECCCCe----EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChH
Q 012799          250 G-------------DG-VIYTGSQDCTIKVWETTQGK----LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (456)
Q Consensus       250 ~-------------~~-~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (456)
                      |             ++ .+++++.||.|++||++++.    ....+..|...|.+++|+|+..                 
T Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-----------------  219 (379)
T 3jrp_A          157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-----------------  219 (379)
T ss_dssp             CCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-----------------
T ss_pred             CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC-----------------
Confidence            9             46 99999999999999998764    4567778999999999999710                 


Q ss_pred             HHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC----ccccccccccEeEEEECCCCCEEEEEECCCcEEEE
Q 012799          312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP----KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (456)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw  387 (456)
                                      .+.++++++.||.|++||+......    ......|...|++++|+|++++|++++.||.|++|
T Consensus       220 ----------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw  283 (379)
T 3jrp_A          220 ----------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW  283 (379)
T ss_dssp             ----------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred             ----------------CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence                            0345999999999999998876422    22334588899999999999999999999999999


Q ss_pred             eCCCCe
Q 012799          388 NGTTGK  393 (456)
Q Consensus       388 d~~~~~  393 (456)
                      ++..+.
T Consensus       284 ~~~~~~  289 (379)
T 3jrp_A          284 KENLEG  289 (379)
T ss_dssp             EEEETT
T ss_pred             eCCCCC
Confidence            988543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-38  Score=317.12  Aligned_cols=195  Identities=11%  Similarity=0.100  Sum_probs=167.2

Q ss_pred             cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  184 (456)
                      .||.+.|++++|+|++++||+|+.||+|+||+..+.+....+ .|...|.+++|+| +++|++++.|++|++||+++++.
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~   91 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV   91 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence            489999999999999999999999999999999877665554 4888999999999 88999999999999999999887


Q ss_pred             ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEE-----------EEecCcCccEEEEEeCCCC-
Q 012799          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-----------ICLSGHTLAVTCVKWGGDG-  252 (456)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~~-  252 (456)
                      +.. + .|...|.+++|+|     +++++++|+.||.|++||+++++..           ..+.+|...|.+++|+|++ 
T Consensus        92 ~~~-~-~~~~~V~~v~~sp-----~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~  164 (902)
T 2oaj_A           92 LTT-V-FVPGKITSIDTDA-----SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI  164 (902)
T ss_dssp             EEE-E-ECSSCEEEEECCT-----TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred             EEE-E-cCCCCEEEEEECC-----CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence            653 2 3668899999999     9999999999999999999988764           2336788999999999964 


Q ss_pred             -eEEEEeCCCcEEEEECCCCeEEEEeecC------------------CcceEEEEecCcce-eeeccccCCCCccCC
Q 012799          253 -VIYTGSQDCTIKVWETTQGKLIRELKGH------------------GHWVNSLALSTEYA-LRTGAFDHTGKQYSS  309 (456)
Q Consensus       253 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~  309 (456)
                       .+++|+.||.| +||+++++.+..+..|                  ...|.+++|+|++. +.++..+...+.|..
T Consensus       165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence             89999999999 9999999998888755                  46799999999975 455566666666554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3e-37  Score=302.15  Aligned_cols=309  Identities=19%  Similarity=0.249  Sum_probs=261.5

Q ss_pred             cccccccCCccc-EEEEEECC--CCCeEEEEECCCcEEEEeCCCC--------cceeEEecCCCCEEEEEEcCCCCEEEE
Q 012799           99 RCSATIAGHTEA-VLSVAFSP--DGRQLASGSGDTTVRLWDLNTQ--------TPMFKCTGHKNWVLCIAWSADGKHLVS  167 (456)
Q Consensus        99 ~~~~~l~~h~~~-V~~~~~s~--~~~~l~~~~~d~~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s  167 (456)
                      .....+.+|.+. |++++|+|  ++++||+|+.||.|++||+.++        +....+..|...|.+++|+|++++|++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            567789999999 99999999  9999999999999999999754        666778889999999999999999999


Q ss_pred             EeCC----CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCC-EEEEEeCCCcEEEEECCCCeEEEEecCcCc-
Q 012799          168 GSKA----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICLSGHTL-  241 (456)
Q Consensus       168 ~~~d----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-  241 (456)
                      ++.+    +.|.+||  .++... .+.+|...|.+++|+|     ++. .+++++.|+.|++||+.+++.+..+.+|.. 
T Consensus       134 ~~~~~~~~~~v~~~d--~~~~~~-~~~~~~~~v~~~~~~~-----~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  205 (615)
T 1pgu_A          134 VGEGRDNFGVFISWD--SGNSLG-EVSGHSQRINACHLKQ-----SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ  205 (615)
T ss_dssp             EECCSSCSEEEEETT--TCCEEE-ECCSCSSCEEEEEECS-----SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT
T ss_pred             eccCCCCccEEEEEE--CCCcce-eeecCCccEEEEEECC-----CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC
Confidence            9988    6899998  444443 5778999999999999     776 899999999999999999999999999999 


Q ss_pred             --cEEEEEeCCC-C-eEEEEeCCCcEEEEECCCCeEEEEe-e---cCCcceEEEEecCcceeeeccccCCCCccCChHHH
Q 012799          242 --AVTCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIREL-K---GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (456)
Q Consensus       242 --~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (456)
                        .|.+++|+|+ + .+++++.||.|++||+++++.+..+ .   .|...|.+++|+ +                     
T Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~---------------------  263 (615)
T 1pgu_A          206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-D---------------------  263 (615)
T ss_dssp             TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-S---------------------
T ss_pred             CceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-C---------------------
Confidence              9999999999 7 8999999999999999999999998 6   799999999998 6                     


Q ss_pred             HHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc----cccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799          314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH----QQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (456)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  389 (456)
                                     +.++++++.|+.|++||+..... ...+..+    ...+.++.|+ +++++++++.||.|++||+
T Consensus       264 ---------------~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~  326 (615)
T 1pgu_A          264 ---------------SQKFATVGADATIRVWDVTTSKC-VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL  326 (615)
T ss_dssp             ---------------SSEEEEEETTSEEEEEETTTTEE-EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred             ---------------CCEEEEEcCCCcEEEEECCCCcE-EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence                           56699999999999999876543 3334333    4678888886 8999999999999999999


Q ss_pred             CCCeEEEEEecccccEEEEEeeeeeeecCCCCceee-------ecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV-------VDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       390 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .+++.+..+.+|.+.|.++.| +.............       ......+..++| ++++.|++++.||.|++|
T Consensus       327 ~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~  398 (615)
T 1pgu_A          327 GHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVN  398 (615)
T ss_dssp             TEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEET
T ss_pred             CCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEE
Confidence            999999999999999999977 32000001111111       223455777788 667899999999999998

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.2e-37  Score=288.55  Aligned_cols=277  Identities=22%  Similarity=0.321  Sum_probs=232.2

Q ss_pred             cEEEEEECCCCCeE-EEEECCCcEEEEeCCCC----cceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCC
Q 012799          110 AVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQ----TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGK  183 (456)
Q Consensus       110 ~V~~~~~s~~~~~l-~~~~~d~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~  183 (456)
                      ....++++|+...+ ++++.||.|+||++.+.    .....+.+|...|++++|+| ++++|++|+.||.|++||+.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            34468899887544 45788999999999654    34556778999999999999 99999999999999999999874


Q ss_pred             C------ccccccCcccceEEEEecccccCCCC-CEEEEEeCCCcEEEEECCCCeEEEEe--cCcCccEEEEEeCCCC-e
Q 012799          184 P------SGNPLSGHKKWITGISWEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-V  253 (456)
Q Consensus       184 ~------~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~  253 (456)
                      .      ....+.+|...|.+++|+|     ++ .+|++++.||.|++||+++++.+..+  ..|...|.+++|+|++ .
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  190 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHP-----TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL  190 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECS-----SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred             CccccCCceEEecCCCCeEEEEEECc-----CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence            2      2235678999999999999     76 69999999999999999999999999  8899999999999999 9


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEe-ecCCcc-eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799          254 IYTGSQDCTIKVWETTQGKLIREL-KGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (456)
Q Consensus       254 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (456)
                      |++++.||.|++||+++++.+..+ ..|... +..+.|+|+                                    +.+
T Consensus       191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~  234 (402)
T 2aq5_A          191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE------------------------------------GKI  234 (402)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST------------------------------------TEE
T ss_pred             EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC------------------------------------CcE
Confidence            999999999999999999999888 667665 899999988                                    455


Q ss_pred             EEEE---eCCCcEEEEecCCCCCCcccc-ccccccEeEEEECCCCCEEEE-EECCCcEEEEeCCCCeE-EEEEec--ccc
Q 012799          332 LVSG---SDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKF-VAVFRG--HVG  403 (456)
Q Consensus       332 l~~~---~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s-~~~dg~i~iwd~~~~~~-~~~~~~--~~~  403 (456)
                      +++|   +.|+.|++||++....+.... ..|...+.+++|+|++++|++ |+.||.|++||+.+++. +..+..  |..
T Consensus       235 l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~  314 (402)
T 2aq5_A          235 LTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKE  314 (402)
T ss_dssp             EEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSS
T ss_pred             EEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCC
Confidence            8888   799999999988766543333 357788999999999999865 55799999999998874 444444  458


Q ss_pred             cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       404 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +|.++                           +|+|++.++++  .|+.+++|
T Consensus       315 ~v~~~---------------------------~~sp~~~~~~s--~~~~~~~~  338 (402)
T 2aq5_A          315 SQRGM---------------------------GYMPKRGLEVN--KCEIARFY  338 (402)
T ss_dssp             CCSEE---------------------------EECCGGGSCGG--GTEEEEEE
T ss_pred             cccce---------------------------EEeccccccee--cceeEEEE
Confidence            88888                           89999998875  45688887

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.6e-36  Score=300.59  Aligned_cols=273  Identities=24%  Similarity=0.406  Sum_probs=225.3

Q ss_pred             cCcccEEEEEEecc-----------ceEEEeecc-------cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeC
Q 012799           76 VSVEKVLSIVYQPQ-----------AVFRIRPVN-------RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL  137 (456)
Q Consensus        76 ~~~~~~~~~~~~~~-----------~~~~~~~~~-------~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~  137 (456)
                      .|...+..+.+.|.           ..+++|...       .+.+.+.+|...|.+++|+|++++|++|+.||+|++||+
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~  459 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL  459 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            36667777777653           245566542       235678999999999999999999999999999999999


Q ss_pred             CCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc--ccccCcccceEEEEecccccCCCCCEEEE
Q 012799          138 NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVS  215 (456)
Q Consensus       138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~l~~  215 (456)
                      .+++....+.+|...|.+++|+|++++|++|+.|++|++||........  ....+|...|.+++|+|..   ....+++
T Consensus       460 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~~l~s  536 (694)
T 3dm0_A          460 AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT---LQPTIVS  536 (694)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS---SSCEEEE
T ss_pred             CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC---CcceEEE
Confidence            9999999999999999999999999999999999999999986543221  1235788999999999822   2358999


Q ss_pred             EeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcce
Q 012799          216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA  294 (456)
Q Consensus       216 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  294 (456)
                      ++.|+.|++||+++++....+.+|...|++++|+|++ .|++++.||.|++||+++++.+..+.. ...+.+++|+|+  
T Consensus       537 ~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~--  613 (694)
T 3dm0_A          537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPN--  613 (694)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSS--
T ss_pred             EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCC--
Confidence            9999999999999999999999999999999999999 999999999999999999999888764 567999999997  


Q ss_pred             eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc-----------------
Q 012799          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT-----------------  357 (456)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------------  357 (456)
                                                        +.++++ +.++.|++||+...... ..+.                 
T Consensus       614 ----------------------------------~~~l~~-~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  657 (694)
T 3dm0_A          614 ----------------------------------RYWLCA-ATEHGIKIWDLESKSIV-EDLKVDLKAEAEKADNSGPAA  657 (694)
T ss_dssp             ----------------------------------SSEEEE-EETTEEEEEETTTTEEE-EEECCCCC-------------
T ss_pred             ----------------------------------CcEEEE-EcCCCEEEEECCCCCCh-hhhcccccccccccccccccc
Confidence                                              333554 45667999998765321 1111                 


Q ss_pred             --cccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          358 --GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       358 --~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                        .+...+++++|+|+|++|++|+.||.|++|++.
T Consensus       658 ~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          658 TKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ---CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence              112247899999999999999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.6e-36  Score=279.36  Aligned_cols=267  Identities=26%  Similarity=0.435  Sum_probs=224.7

Q ss_pred             cceEEEeec--ccccccccC-CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE
Q 012799           89 QAVFRIRPV--NRCSATIAG-HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL  165 (456)
Q Consensus        89 ~~~~~~~~~--~~~~~~l~~-h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  165 (456)
                      +..+.+|..  +.....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|  ++++|
T Consensus       112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l  189 (401)
T 4aez_A          112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVL  189 (401)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEE
T ss_pred             CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEE
Confidence            344555543  334444444 8999999999999999999999999999999999999999999999999999  56799


Q ss_pred             EEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEE
Q 012799          166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTC  245 (456)
Q Consensus       166 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  245 (456)
                      ++++.||.|++||++........+.+|...|.+++|+|     ++.+|++++.||.|++||+++++.+..+..|...|.+
T Consensus       190 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  264 (401)
T 4aez_A          190 SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-----DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA  264 (401)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred             EEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-----CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence            99999999999999965555556788999999999999     8899999999999999999999999999999999999


Q ss_pred             EEeCCCC--eEEEEe--CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799          246 VKWGGDG--VIYTGS--QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (456)
Q Consensus       246 ~~~~~~~--~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (456)
                      ++|+|++  .+++++  .|+.|++||+++++.+..+. +...+.+++|+|+                             
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~-----------------------------  314 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPH-----------------------------  314 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSS-----------------------------
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCC-----------------------------
Confidence            9999977  556654  79999999999999998886 6678999999998                             


Q ss_pred             hhccCCCCCEEEE--EeCCCcEEEEecCCCCC-CccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 012799          322 NKIKGNAPERLVS--GSDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (456)
Q Consensus       322 ~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  398 (456)
                             +..+++  |+.||.|++||+..... ....+.+|...|.+++|+|++++|++++.||.|++|++.+++.+...
T Consensus       315 -------~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          315 -------SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             -------SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             -------CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence                   455777  55899999999876432 22345689999999999999999999999999999999998877654


Q ss_pred             e
Q 012799          399 R  399 (456)
Q Consensus       399 ~  399 (456)
                      .
T Consensus       388 ~  388 (401)
T 4aez_A          388 I  388 (401)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.9e-36  Score=306.10  Aligned_cols=276  Identities=19%  Similarity=0.309  Sum_probs=236.0

Q ss_pred             CcccEEEEEEeccc----------eEEEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee
Q 012799           77 SVEKVLSIVYQPQA----------VFRIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF  144 (456)
Q Consensus        77 ~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~  144 (456)
                      +...+..+.|+|+.          .+.+|.  .+....++.+|.++|++++|+|++++|++|+.||.|++||+.+++.+.
T Consensus        12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~   91 (814)
T 3mkq_A           12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV   91 (814)
T ss_dssp             ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            34456666666644          344554  345678889999999999999999999999999999999999999999


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (456)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i  224 (456)
                      .+.+|...|.+++|+|++++|++++.||.|++||++++......+.+|...|.+++|+|.    ++..+++++.||.|++
T Consensus        92 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~~~~~dg~v~v  167 (814)
T 3mkq_A           92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK----DPSTFASGCLDRTVKV  167 (814)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT----EEEEEEEEETTSEEEE
T ss_pred             EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC----CCCEEEEEeCCCeEEE
Confidence            999999999999999999999999999999999999875555567889999999999982    4578999999999999


Q ss_pred             EECCCCeEEEEecCcC-ccEEEEEeCC--CC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccc
Q 012799          225 WDVSLRKCVICLSGHT-LAVTCVKWGG--DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (456)
Q Consensus       225 wd~~~~~~~~~~~~~~-~~v~~~~~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  300 (456)
                      ||+.++.....+..+. ..+.+++|+|  ++ .+++++.||.|++||+++++.+..+..|...+.+++|+|+        
T Consensus       168 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~--------  239 (814)
T 3mkq_A          168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT--------  239 (814)
T ss_dssp             EETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS--------
T ss_pred             EECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC--------
Confidence            9998887776665554 8899999998  77 9999999999999999999999999999999999999998        


Q ss_pred             cCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCC--EEEEE
Q 012799          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ--WVASA  378 (456)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~  378 (456)
                                                  +.++++++.||.|++||+... .....+..|...+.+++|+|++.  +++++
T Consensus       240 ----------------------------~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  290 (814)
T 3mkq_A          240 ----------------------------LPIIISGSEDGTLKIWNSSTY-KVEKTLNVGLERSWCIATHPTGRKNYIASG  290 (814)
T ss_dssp             ----------------------------SSEEEEEETTSCEEEEETTTC-SEEEEECCSSSSEEEEEECTTCGGGEEEEE
T ss_pred             ----------------------------CCEEEEEeCCCeEEEEECCCC-cEEEEeecCCCcEEEEEEccCCCceEEEEE
Confidence                                        566999999999999997654 45556778888999999999987  45555


Q ss_pred             ECCCcEEEEeCCCCeE
Q 012799          379 SFDKSIKLWNGTTGKF  394 (456)
Q Consensus       379 ~~dg~i~iwd~~~~~~  394 (456)
                      + ++.+.+|++..+..
T Consensus       291 ~-~~~~~~~~~~~~~~  305 (814)
T 3mkq_A          291 F-DNGFTVLSLGNDEP  305 (814)
T ss_dssp             E-TTEEEEEECSCCSC
T ss_pred             e-CCCEEEEEcCCCCc
Confidence            4 66789998776543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9e-37  Score=279.80  Aligned_cols=252  Identities=15%  Similarity=0.210  Sum_probs=219.3

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE--EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  177 (456)
                      ....+.+|...|.+++|+|++++|++++.||.|++||+.+++....  +..|...|.+++|+|++++|++++.||.|++|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence            6678889999999999999999999999999999999988764443  36799999999999999999999999999999


Q ss_pred             eCCCCCC---ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC------------------CCCeEEEEe
Q 012799          178 DPQTGKP---SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV------------------SLRKCVICL  236 (456)
Q Consensus       178 d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~------------------~~~~~~~~~  236 (456)
                      |++.+..   .......|...|.+++|+|     ++.++++++.||.|++||+                  ..++.+..+
T Consensus       124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
T 1k8k_C          124 YFEQENDWWVCKHIKKPIRSTVLSLDWHP-----NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES  198 (372)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECT-----TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred             EecCCCcceeeeeeecccCCCeeEEEEcC-----CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence            9988763   2334567889999999999     8899999999999999995                  467888899


Q ss_pred             cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHH
Q 012799          237 SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (456)
Q Consensus       237 ~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (456)
                      ..|...|.+++|+|++ .+++++.||.|++||+++++.+..+..|...+.+++|+|+                       
T Consensus       199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------  255 (372)
T 1k8k_C          199 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE-----------------------  255 (372)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEET-----------------------
T ss_pred             CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecC-----------------------
Confidence            9999999999999999 9999999999999999999999999999999999999987                       


Q ss_pred             HHHhhhhhccCCCCCEEEEEeCCCcEEEEecCC--CC-------------------------------CC-------ccc
Q 012799          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAV--SK-------------------------------QP-------KTR  355 (456)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~-------------------------------~~-------~~~  355 (456)
                                   +.+++++ .|+.|++|++..  +.                               ..       ...
T Consensus       256 -------------~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (372)
T 1k8k_C          256 -------------SSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  321 (372)
T ss_dssp             -------------TEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             -------------CCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence                         3446666 999999999876  21                               00       122


Q ss_pred             cccccccEeEEEEC-CCC---CEEEEEECCCcEEEEeCCCCe
Q 012799          356 MTGHQQLVNHVYFS-PDG---QWVASASFDKSIKLWNGTTGK  393 (456)
Q Consensus       356 ~~~~~~~v~~~~~s-p~~---~~l~s~~~dg~i~iwd~~~~~  393 (456)
                      ..+|...|++++|+ ++|   ++|++|+.||.|++||+.+++
T Consensus       322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            24899999999966 677   999999999999999987654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.1e-35  Score=276.90  Aligned_cols=280  Identities=25%  Similarity=0.425  Sum_probs=228.6

Q ss_pred             ccEEEEEEeccceEEEeecc--ccccc--ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEE
Q 012799           79 EKVLSIVYQPQAVFRIRPVN--RCSAT--IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL  154 (456)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~--~~~~~--l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~  154 (456)
                      ..++.+..  +..+++|...  ++.+.  +.+|.+.|++++|+|+|++||+|+.||+|++||+.+++.+..+.+|...+.
T Consensus       116 ~n~lAvgl--d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~  193 (420)
T 4gga_A          116 GNVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG  193 (420)
T ss_dssp             TSEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceE
Confidence            44555544  4567777653  44444  457889999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe---
Q 012799          155 CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---  231 (456)
Q Consensus       155 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---  231 (456)
                      ++++  ++.+|++|+.|+.+++||..........+.+|...+..+.|.|     ++.++++++.|+.+++|+..+++   
T Consensus       194 ~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-----~g~~l~s~~~D~~v~i~~~~~~~~~~  266 (420)
T 4gga_A          194 SLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSAPGEGGW  266 (420)
T ss_dssp             EEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESSCCSSCS
T ss_pred             EEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-----CCCeeeeeeccccceEEeeccccccc
Confidence            9988  4679999999999999999887766557789999999999999     89999999999999999998764   


Q ss_pred             -EEEEecCcCccEEEEEeCCCC--eEEE--EeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCc
Q 012799          232 -CVICLSGHTLAVTCVKWGGDG--VIYT--GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ  306 (456)
Q Consensus       232 -~~~~~~~~~~~v~~~~~~~~~--~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  306 (456)
                       .+.....|...|.+++|+|.+  .+++  |+.|++|++||+.+++....+..+ ..+.++.++++              
T Consensus       267 ~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~--------------  331 (420)
T 4gga_A          267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPH--------------  331 (420)
T ss_dssp             CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETT--------------
T ss_pred             eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCC--------------
Confidence             345667899999999999976  5554  457999999999999999888754 56888888887              


Q ss_pred             cCChHHHHHHHHhhhhhccCCCCCEEEEEe--CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcE
Q 012799          307 YSSPEEMKKAALERYNKIKGNAPERLVSGS--DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI  384 (456)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i  384 (456)
                                            +..+++++  .|+.|++||+.+. ..+..+.+|.+.|++++|+|+|++|++|+.||+|
T Consensus       332 ----------------------~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tv  388 (420)
T 4gga_A          332 ----------------------YKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETL  388 (420)
T ss_dssp             ----------------------TTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred             ----------------------CCeEEEEEecCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeE
Confidence                                  34455544  7999999997665 4566788999999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEecccccE
Q 012799          385 KLWNGTTGKFVAVFRGHVGPV  405 (456)
Q Consensus       385 ~iwd~~~~~~~~~~~~~~~~v  405 (456)
                      +|||+.+.......+.+...+
T Consensus       389 riWdv~~~~~~~~~~~~~~~~  409 (420)
T 4gga_A          389 RLWRCFELDPARRREREKASA  409 (420)
T ss_dssp             EEECCSCSSCC----------
T ss_pred             EEEECCCCCccchhhhccCCc
Confidence            999998876665555554433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.1e-36  Score=279.97  Aligned_cols=274  Identities=17%  Similarity=0.224  Sum_probs=232.7

Q ss_pred             CcccEEEEEEeccc--------eEEEeecc--c------ccccccCCcccEEEEEECCC----C---CeEEEEECCCcEE
Q 012799           77 SVEKVLSIVYQPQA--------VFRIRPVN--R------CSATIAGHTEAVLSVAFSPD----G---RQLASGSGDTTVR  133 (456)
Q Consensus        77 ~~~~~~~~~~~~~~--------~~~~~~~~--~------~~~~l~~h~~~V~~~~~s~~----~---~~l~~~~~d~~v~  133 (456)
                      +...+..+.|.|..        .+++|...  .      +...+.+|...|++++|+|+    +   ++|++++.||.|+
T Consensus        15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~   94 (397)
T 1sq9_A           15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL   94 (397)
T ss_dssp             SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE
T ss_pred             hhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEE
Confidence            45566667776632        33444332  2      56788899999999999999    9   9999999999999


Q ss_pred             EEeCCCCcc-----eeEEecC-----CCCEEEEEEc----CCCCE-EEEEeCCCeEEEEeCCC------CCCcc-----c
Q 012799          134 LWDLNTQTP-----MFKCTGH-----KNWVLCIAWS----ADGKH-LVSGSKAGELQCWDPQT------GKPSG-----N  187 (456)
Q Consensus       134 vwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~s~~~dg~i~vwd~~~------~~~~~-----~  187 (456)
                      +||+.+++.     ...+..|     ...|.+++|+    |++++ |++++.||.|++||+.+      ++...     .
T Consensus        95 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  174 (397)
T 1sq9_A           95 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE  174 (397)
T ss_dssp             EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEE
T ss_pred             EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcce
Confidence            999998887     8888888     5999999999    99999 99999999999999988      55443     2


Q ss_pred             cc------cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC---c---CccEEEEEeCCCC-eE
Q 012799          188 PL------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---H---TLAVTCVKWGGDG-VI  254 (456)
Q Consensus       188 ~~------~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~v~~~~~~~~~-~l  254 (456)
                      ..      ..|...|.+++|+|     ++ .+++++.||.|++||+++++.+..+..   |   ...|.+++|+|++ .|
T Consensus       175 ~~~~~~~~~~~~~~i~~~~~~~-----~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l  248 (397)
T 1sq9_A          175 LQGTVESPMTPSQFATSVDISE-----RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL  248 (397)
T ss_dssp             EEEEECCSSSSCCCCCEEEECT-----TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred             eeeeeccccCCCCCceEEEECC-----Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEE
Confidence            11      45788999999999     88 999999999999999999999999988   8   9999999999998 89


Q ss_pred             EEEeCC---CcEEEEECCCCeEEEEeec-------------CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799          255 YTGSQD---CTIKVWETTQGKLIRELKG-------------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (456)
Q Consensus       255 ~~~~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (456)
                      ++++.|   |.|++||+++++.+..+..             |...|.+++|+|+                          
T Consensus       249 ~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------------  302 (397)
T 1sq9_A          249 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS--------------------------  302 (397)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS--------------------------
T ss_pred             EEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCC--------------------------
Confidence            999999   9999999999999999988             8999999999998                          


Q ss_pred             hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc------cc---------------cccEeEEEECCCC-----
Q 012799          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT------GH---------------QQLVNHVYFSPDG-----  372 (456)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~---------------~~~v~~~~~sp~~-----  372 (456)
                                +.+|++++.||.|++||+.... ....+.      +|               ...|++++|+|++     
T Consensus       303 ----------~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~  371 (397)
T 1sq9_A          303 ----------GETLCSAGWDGKLRFWDVKTKE-RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM  371 (397)
T ss_dssp             ----------SSEEEEEETTSEEEEEETTTTE-EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred             ----------CCEEEEEeCCCeEEEEEcCCCc-eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence                      5679999999999999987654 444455      66               8999999999998     


Q ss_pred             -----CEEEEEECCCcEEEEeCCCCe
Q 012799          373 -----QWVASASFDKSIKLWNGTTGK  393 (456)
Q Consensus       373 -----~~l~s~~~dg~i~iwd~~~~~  393 (456)
                           ++|++|+.||.|++|++.+|+
T Consensus       372 ~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          372 GADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccceEEEecCCCcEEEEEcCCCC
Confidence                 799999999999999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-37  Score=280.46  Aligned_cols=262  Identities=19%  Similarity=0.321  Sum_probs=214.6

Q ss_pred             cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--CCccccccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799          141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG--KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (456)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~  218 (456)
                      +.+..+.+|...|++++|+|++++|++|+.||.|++||+..+  +.. ..+.+|...|.+++|++..   ++.+|++++.
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~---~~~~l~s~~~   77 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI-DTLTGHEGPVWRVDWAHPK---FGTILASCSY   77 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE-EEECCCSSCEEEEEECCGG---GCSEEEEEET
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee-eEecCCCCcEEEEEeCCCC---CCCEEEEecc
Confidence            456678899999999999999999999999999999999743  333 2567899999999998721   3899999999


Q ss_pred             CCcEEEEECCCCe--EEEEecCcCccEEEEEeCCC--C-eEEEEeCCCcEEEEECCCCe--EEEEeecCCcceEEEEecC
Q 012799          219 DGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALST  291 (456)
Q Consensus       219 dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~  291 (456)
                      ||.|++||+.+++  .+..+..|...|.+++|+|+  + .+++++.||.|++||++++.  ....+..|...|.+++|+|
T Consensus        78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~  157 (379)
T 3jrp_A           78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  157 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred             CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence            9999999999987  77788889999999999998  7 99999999999999999873  4456677899999999998


Q ss_pred             cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC---CccccccccccEeEEEE
Q 012799          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYF  368 (456)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~  368 (456)
                      ........                       ....+++.++++++.|+.|++||++....   ....+.+|...|.+++|
T Consensus       158 ~~~~~~~~-----------------------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~  214 (379)
T 3jrp_A          158 ATIEEDGE-----------------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  214 (379)
T ss_dssp             CC---------------------------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             cccccccc-----------------------ccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE
Confidence            52110000                       00112367799999999999999876553   33456789999999999


Q ss_pred             CCC---CCEEEEEECCCcEEEEeCCCCe---EEEEE--ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecC
Q 012799          369 SPD---GQWVASASFDKSIKLWNGTTGK---FVAVF--RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD  440 (456)
Q Consensus       369 sp~---~~~l~s~~~dg~i~iwd~~~~~---~~~~~--~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  440 (456)
                      +|+   +++|++++.||.|++||+.++.   ....+  ..|...|.++                           +|+|+
T Consensus       215 sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~  267 (379)
T 3jrp_A          215 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA---------------------------SWSLS  267 (379)
T ss_dssp             CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEE---------------------------EECSS
T ss_pred             CCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEE---------------------------EEcCC
Confidence            999   8999999999999999998864   22222  3478889999                           99999


Q ss_pred             CCeEEEeeCCCceEEC
Q 012799          441 SRLLLSGSKDSTLKVT  456 (456)
Q Consensus       441 g~~l~s~s~Dg~v~iW  456 (456)
                      |++|++++.||.|+||
T Consensus       268 g~~l~~~~~dg~i~iw  283 (379)
T 3jrp_A          268 GNVLALSGGDNKVTLW  283 (379)
T ss_dssp             SCCEEEEESSSSEEEE
T ss_pred             CCEEEEecCCCcEEEE
Confidence            9999999999999998

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-37  Score=283.94  Aligned_cols=260  Identities=12%  Similarity=0.139  Sum_probs=215.3

Q ss_pred             cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  184 (456)
                      +.-...|.+++|+|||+++|+++.|++|+  |...++   .+.+|...|.+++|+|+|       .++.+.+|+.   +.
T Consensus        12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~---~~   76 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELA---QQ   76 (588)
T ss_dssp             CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCC---CS
T ss_pred             hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeC---CC
Confidence            34568999999999999999999999999  755554   447899999999999998       4555555554   32


Q ss_pred             ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc-----cEEEEEeCCCC-eEEEEe
Q 012799          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-----AVTCVKWGGDG-VIYTGS  258 (456)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~-~l~~~~  258 (456)
                      .......|...|.+++|+|     +|..+++++.||.|++||...  ++..+. |..     .+.+++|+|+| .|++|+
T Consensus        77 ~~~~~~~~~~~V~~vawSP-----dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs  148 (588)
T 2j04_A           77 NGLLNSQPVCYPRVCKPSP-----IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN  148 (588)
T ss_dssp             SCSSTTSCSCCEEEEEECS-----SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred             ceEeecCCCCcEEEEEECC-----CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence            2222335688999999999     999999999999999999544  666666 665     49999999999 999999


Q ss_pred             CCCcEEEEECCCCe-------EEEEe----ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799          259 QDCTIKVWETTQGK-------LIREL----KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (456)
Q Consensus       259 ~dg~i~iwd~~~~~-------~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (456)
                      .||+|++||+.++.       .+.++    .+|...|.+++|+|+                                   
T Consensus       149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd-----------------------------------  193 (588)
T 2j04_A          149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED-----------------------------------  193 (588)
T ss_dssp             TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT-----------------------------------
T ss_pred             CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC-----------------------------------
Confidence            99999999999875       35666    567789999999998                                   


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCC--cccc-ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccccc
Q 012799          328 APERLVSGSDDFTMFLWEPAVSKQP--KTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP  404 (456)
Q Consensus       328 ~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  404 (456)
                       +  +++++.|+.+++||+......  ...+ .+|...|.+++|+  |+.||+++ +|.|++||+.+++......+|.+.
T Consensus       194 -g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~  267 (588)
T 2j04_A          194 -V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLEN  267 (588)
T ss_dssp             -E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred             -c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence             4  788999999999998765532  2334 4788999999999  68899887 699999999988875444489999


Q ss_pred             EEEEEeeeeeeecCCCCceeeecccccccceeE--ecCCCeEEEeeCCCceEEC
Q 012799          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW--SADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       405 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~l~s~s~Dg~v~iW  456 (456)
                      |+++                           +|  +||+..|+++++||+ ++|
T Consensus       268 V~~v---------------------------a~~~s~d~~~La~a~edG~-klw  293 (588)
T 2j04_A          268 FHII---------------------------PLNHEKESTILLMSNKTSY-KVL  293 (588)
T ss_dssp             CCEE---------------------------EETTCSSCEEEEECSSCEE-EEE
T ss_pred             EEEE---------------------------EeeeCCCCCEEEEEcCCCC-EEE
Confidence            9999                           99  999999999999999 887

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.4e-37  Score=280.05  Aligned_cols=244  Identities=20%  Similarity=0.311  Sum_probs=211.2

Q ss_pred             CcccEEEEEECCC----CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 012799          107 HTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT  181 (456)
Q Consensus       107 h~~~V~~~~~s~~----~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~  181 (456)
                      |...|++++|+|+    +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            6688999999999    67999999999999999999999999999999999999999 999999999999999999998


Q ss_pred             CCCcccc--ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE------------------------
Q 012799          182 GKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC------------------------  235 (456)
Q Consensus       182 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------------------  235 (456)
                      ++.....  ...|...|.+++|+|     ++.+|++++.||.|++||+++++....                        
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDL-----LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP  222 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred             CeEEEEecccccccCceeEEEECC-----CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence            8765522  268999999999999     889999999999999999987654332                        


Q ss_pred             ----ecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCe--------------EEEEeecCCcceEEEEecCcceeee
Q 012799          236 ----LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK--------------LIRELKGHGHWVNSLALSTEYALRT  297 (456)
Q Consensus       236 ----~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~~~  297 (456)
                          ...|...|.+++|+ ...+++++.||.|++||+++++              .+..+..|...|.+++++|+.    
T Consensus       223 ~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----  297 (366)
T 3k26_A          223 DFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF----  297 (366)
T ss_dssp             SEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT----
T ss_pred             ccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC----
Confidence                23489999999999 3499999999999999998764              377778888889999988861    


Q ss_pred             ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC---ccccccc--cccEeEEEECCCC
Q 012799          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---KTRMTGH--QQLVNHVYFSPDG  372 (456)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~--~~~v~~~~~sp~~  372 (456)
                                                    .+.++++++.||.|++||+......   ...+.+|  ...|++++|+|++
T Consensus       298 ------------------------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  347 (366)
T 3k26_A          298 ------------------------------WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS  347 (366)
T ss_dssp             ------------------------------TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred             ------------------------------CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence                                          1456999999999999998775432   2245666  7899999999999


Q ss_pred             CEEEEEECCCcEEEEeCC
Q 012799          373 QWVASASFDKSIKLWNGT  390 (456)
Q Consensus       373 ~~l~s~~~dg~i~iwd~~  390 (456)
                      ++|++++.||.|++||+.
T Consensus       348 ~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          348 SILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SEEEEEETTSEEEEEEC-
T ss_pred             CeEEEEeCCCEEEEEEec
Confidence            999999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.5e-36  Score=275.16  Aligned_cols=253  Identities=17%  Similarity=0.273  Sum_probs=210.6

Q ss_pred             cCCcccEEEEEECCC---CCeEEEEECCCcEEEEeCCCCc-ceeEEecCCCCEEEEEE------cCCCCEEEEEeCCCeE
Q 012799          105 AGHTEAVLSVAFSPD---GRQLASGSGDTTVRLWDLNTQT-PMFKCTGHKNWVLCIAW------SADGKHLVSGSKAGEL  174 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~---~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~s~~~dg~i  174 (456)
                      .+|...|.+++|+|+   +++|++|+.||.|++||+.+++ .+..+.+|...|.++.|      +|++++|++++.||.|
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i  141 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV  141 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence            379999999999998   6999999999999999999888 88899999999999955      6799999999999999


Q ss_pred             EEEeCCCCCCccccccCccc----ceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799          175 QCWDPQTGKPSGNPLSGHKK----WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  250 (456)
                      ++||+++++.....+..|..    .+.++.|.+ .+++++.++++++.||.|++||+++++.... ..|...|.+++|+|
T Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~  219 (357)
T 3i2n_A          142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN-AYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDR  219 (357)
T ss_dssp             EEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC-CCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred             EEEeCCCCCCcceeccccCCCCCCceEEEEEEe-ccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCC
Confidence            99999988743334444433    788888432 1122889999999999999999999987554 56889999999999


Q ss_pred             ---CC-eEEEEeCCCcEEEEECCCCeEEEEe-----ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799          251 ---DG-VIYTGSQDCTIKVWETTQGKLIREL-----KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (456)
Q Consensus       251 ---~~-~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (456)
                         ++ .+++++.||.|++||+++++....+     ..|...|.+++|+|++.                           
T Consensus       220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------------  272 (357)
T 3i2n_A          220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR---------------------------  272 (357)
T ss_dssp             SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE---------------------------
T ss_pred             CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC---------------------------
Confidence               77 9999999999999999876654444     38999999999999842                           


Q ss_pred             hhccCCCCCEEEEEeCCCcEEEEecCCCCC------------------CccccccccccEeEEEECCCCCEEE-EEECCC
Q 012799          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQ------------------PKTRMTGHQQLVNHVYFSPDGQWVA-SASFDK  382 (456)
Q Consensus       322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------------~~~~~~~~~~~v~~~~~sp~~~~l~-s~~~dg  382 (456)
                              .++++++.||.|++||++....                  ....+.+|...|++++|+|++++|+ +++.||
T Consensus       273 --------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~  344 (357)
T 3i2n_A          273 --------ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ  344 (357)
T ss_dssp             --------EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             --------cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence                    2599999999999999875442                  2445678999999999999999988 899999


Q ss_pred             cEEEEeCCCCeE
Q 012799          383 SIKLWNGTTGKF  394 (456)
Q Consensus       383 ~i~iwd~~~~~~  394 (456)
                      .|++||+.+.+.
T Consensus       345 ~i~iw~~~~~~~  356 (357)
T 3i2n_A          345 TVRVLIVTKLNK  356 (357)
T ss_dssp             EEEEEEECC---
T ss_pred             cEEEEECCCccc
Confidence            999999987654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-38  Score=296.78  Aligned_cols=269  Identities=12%  Similarity=0.052  Sum_probs=206.0

Q ss_pred             ccccccCCcccEEEEEECCCC---------CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSPDG---------RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK  170 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~---------~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  170 (456)
                      +..++. +.+.|.+++|+|++         ++||+|+.++..                       -..+|+++.+++++.
T Consensus       126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS~s~  181 (524)
T 2j04_B          126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDKEKH  181 (524)
T ss_dssp             CEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------
T ss_pred             ceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------CccchhhhhhccCCC
Confidence            333443 68899999999987         799999866420                       013689999999999


Q ss_pred             CCeEEEEeCCCCCCcc---ccccCcccceEEEEecccc-cCCCCCEEEEEeCCCcEEEEECCCCeE-----------EEE
Q 012799          171 AGELQCWDPQTGKPSG---NPLSGHKKWITGISWEPVH-LNAPCRRFVSASKDGDARIWDVSLRKC-----------VIC  235 (456)
Q Consensus       171 dg~i~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~  235 (456)
                      |++|+|||+.+++...   ..+..|.+.|.+++|+|.. .+.++.+|++++.||+|++||+..+..           ...
T Consensus       182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~  261 (524)
T 2j04_B          182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLT  261 (524)
T ss_dssp             CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEE
T ss_pred             CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEE
Confidence            9999999998776431   1245677889999999941 112467999999999999999976532           246


Q ss_pred             ecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEE--EecCcceeeeccccCCCCccCChHH
Q 012799          236 LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSL--ALSTEYALRTGAFDHTGKQYSSPEE  312 (456)
Q Consensus       236 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  312 (456)
                      +.+|...|++++|++++.|++|+.||+|++||++++ .+...+.+|...|.++  .++++                    
T Consensus       262 l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~--------------------  321 (524)
T 2j04_B          262 LSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDF--------------------  321 (524)
T ss_dssp             ECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTT--------------------
T ss_pred             EEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCC--------------------
Confidence            778999999999998789999999999999999976 3456678899999999  45665                    


Q ss_pred             HHHHHHhhhhhccCCCC-CEEEEEeCCCcEEEEecCCCCCCccccccccc--cEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799          313 MKKAALERYNKIKGNAP-ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNG  389 (456)
Q Consensus       313 ~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~s~~~dg~i~iwd~  389 (456)
                                      + .+|++++.|++|++||++.... ...+.+|..  .|.+++|+|+++.+++++.|++|++||+
T Consensus       322 ----------------g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~  384 (524)
T 2j04_B          322 ----------------EDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPS  384 (524)
T ss_dssp             ----------------SCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEET
T ss_pred             ----------------CCeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEEC
Confidence                            4 5699999999999999876432 223445543  4789999999999999999999999999


Q ss_pred             CCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       390 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +++.++..+.+|.+.|+++                           +|+|+|++|++|+.||+|+||
T Consensus       385 ~~~~~~~~l~gH~~~V~sv---------------------------a~Sp~g~~l~Sgs~Dgtv~lw  424 (524)
T 2j04_B          385 RAAFAVHPLVSRETTITAI---------------------------GVSRLHPMVLAGSADGSLIIT  424 (524)
T ss_dssp             TCTTCCEEEEECSSCEEEE---------------------------ECCSSCCBCEEEETTTEEECC
T ss_pred             cccccceeeecCCCceEEE---------------------------EeCCCCCeEEEEECCCEEEEE
Confidence            9999888899999999999                           899999999999999999998

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-35  Score=267.35  Aligned_cols=276  Identities=17%  Similarity=0.236  Sum_probs=237.0

Q ss_pred             CcccEEEEEEeccc----------eEEEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee
Q 012799           77 SVEKVLSIVYQPQA----------VFRIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF  144 (456)
Q Consensus        77 ~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~  144 (456)
                      +...+..+.|.|+.          .+.+|.  .++....+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus        31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  110 (369)
T 3zwl_B           31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVA  110 (369)
T ss_dssp             CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            44556666666643          334453  345678899999999999999999999999999999999999999888


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCCCcc----------ccccCccc--ceEEEEecccccC
Q 012799          145 KCTGHKNWVLCIAWSADGKHLVSGSKA-----GELQCWDPQTGKPSG----------NPLSGHKK--WITGISWEPVHLN  207 (456)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~----------~~~~~~~~--~v~~~~~~~~~~~  207 (456)
                      .+. +...|.+++|+|+++++++++.+     |.|.+||+..+....          .....|..  .+.+++|+|    
T Consensus       111 ~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  185 (369)
T 3zwl_B          111 TWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST----  185 (369)
T ss_dssp             EEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG----
T ss_pred             Eee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC----
Confidence            887 88999999999999999999999     999999998765322          12334444  899999999    


Q ss_pred             CCCCEEEEEeCCCcEEEEECCC-CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceE
Q 012799          208 APCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVN  285 (456)
Q Consensus       208 ~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~  285 (456)
                       +++.+++++.||.|++||+++ .+.+..+..|...|.+++|+|++ .|++++.||.|++||+++++.+..+. +...+.
T Consensus       186 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~  263 (369)
T 3zwl_B          186 -KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLN  263 (369)
T ss_dssp             -GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEE
T ss_pred             -CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCce
Confidence             889999999999999999998 78888999999999999999999 89999999999999999999988887 778899


Q ss_pred             EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC--------------cEEEEecCCCCC
Q 012799          286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF--------------TMFLWEPAVSKQ  351 (456)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~  351 (456)
                      .++++|+                                    +.++++++.++              .+++||.... .
T Consensus       264 ~~~~~~~------------------------------------~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~  306 (369)
T 3zwl_B          264 TAVITPL------------------------------------KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-E  306 (369)
T ss_dssp             EEEECSS------------------------------------SSEEEEEECCC-------------CEEEEEETTTC-C
T ss_pred             eEEecCC------------------------------------CceEEEeecCCCceEEEEecCCCcceeEEEecCCC-c
Confidence            9999998                                    55588887777              8999997655 4


Q ss_pred             CccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEE
Q 012799          352 PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA  396 (456)
Q Consensus       352 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~  396 (456)
                      ....+.+|...|++++|+|++++|++++.||.|++|++.++....
T Consensus       307 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  351 (369)
T 3zwl_B          307 EIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF  351 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred             chhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence            556678899999999999999999999999999999998765433

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-37  Score=304.84  Aligned_cols=254  Identities=22%  Similarity=0.397  Sum_probs=215.7

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCC--CCcceeEEecCCCCEEEEEEcCC--CCEEEEEeCCCeEEE
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQC  176 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~v  176 (456)
                      +..+.+|.+.|++++|+|++++|++|+.||.|++||+.  +++....+.+|.+.|++++|+|+  +++|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            35678999999999999999999999999999999997  45677788899999999999987  999999999999999


Q ss_pred             EeCCCCCC-ccccccCcccceEEEEecccccCCC--CCEEEEEeCCCcEEEEECCCC--eEEEEecCcCccEEEEEeCCC
Q 012799          177 WDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAP--CRRFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGD  251 (456)
Q Consensus       177 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~  251 (456)
                      ||+.+++. .......|...|.+++|+|     +  +..+++|+.||.|++||++++  .....+.+|...|.+++|+|.
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp-----~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAP-----HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECC-----GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred             EECCCCcccccccccCCCCCeEEEEECC-----CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence            99998752 2225677999999999999     6  899999999999999999877  344556789999999999993


Q ss_pred             -------------C-eEEEEeCCCcEEEEECCCC----eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHH
Q 012799          252 -------------G-VIYTGSQDCTIKVWETTQG----KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (456)
Q Consensus       252 -------------~-~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (456)
                                   + .+++|+.||.|++||++++    .....+.+|...|.+++|+|+..                   
T Consensus       157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-------------------  217 (753)
T 3jro_A          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-------------------  217 (753)
T ss_dssp             C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-------------------
T ss_pred             ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC-------------------
Confidence                         5 9999999999999999887    56677888999999999999710                   


Q ss_pred             HHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC----CccccccccccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799          314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (456)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  389 (456)
                                    .+.++++++.||.|++||+.....    .......|...|++++|+|+|++|++|+.||.|++|++
T Consensus       218 --------------~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          218 --------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             --------------SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             --------------CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence                          034599999999999999877532    23334568889999999999999999999999999999


Q ss_pred             CCC
Q 012799          390 TTG  392 (456)
Q Consensus       390 ~~~  392 (456)
                      ..+
T Consensus       284 ~~~  286 (753)
T 3jro_A          284 NLE  286 (753)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            853

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-37  Score=284.28  Aligned_cols=242  Identities=19%  Similarity=0.258  Sum_probs=204.0

Q ss_pred             EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799          146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (456)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i  224 (456)
                      +..+..+|++++|+|++++|++|+.|+.|++||+.++. .....+.+|...|.+++|+|     ++++|++++.|+.|++
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-----~~~~l~s~s~d~~v~v   81 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-----KSNRIVTCSQDRNAYV   81 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-----TTCCEEEEETTSSEEE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-----CCCEEEEEeCCCeEEE
Confidence            34467899999999999999999999999999999873 23336788999999999999     8899999999999999


Q ss_pred             EECCCCe---EEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCe---EEEEeec-CCcceEEEEecCcceee
Q 012799          225 WDVSLRK---CVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK---LIRELKG-HGHWVNSLALSTEYALR  296 (456)
Q Consensus       225 wd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~~  296 (456)
                      ||+.+++   ....+..|...|.+++|+|++ .|++++.|+.|++||+++++   ....+.. |...|.+++|+|+    
T Consensus        82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----  157 (377)
T 3dwl_C           82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN----  157 (377)
T ss_dssp             C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT----
T ss_pred             EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC----
Confidence            9999877   677788899999999999998 89999999999999999887   3677777 8999999999998    


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-----------------CCccccccc
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-----------------QPKTRMTGH  359 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~~  359 (456)
                                                      +.++++++.|+.|++||+....                 .....+ +|
T Consensus       158 --------------------------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  204 (377)
T 3dwl_C          158 --------------------------------NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS  204 (377)
T ss_dssp             --------------------------------SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC
T ss_pred             --------------------------------CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC
Confidence                                            5669999999999999985321                 123334 89


Q ss_pred             cccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE----EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccce
Q 012799          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLY  435 (456)
Q Consensus       360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (456)
                      ...|++++|+|++++|++++.||.|++||+.+++.    +..+.+|..+|.++                           
T Consensus       205 ~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~---------------------------  257 (377)
T 3dwl_C          205 GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSL---------------------------  257 (377)
T ss_dssp             SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEE---------------------------
T ss_pred             CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEE---------------------------
Confidence            99999999999999999999999999999999887    78889999999999                           


Q ss_pred             eEecCCCeEEEeeCCCceEEC
Q 012799          436 SWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       436 ~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +|+|+|++|++|+.|+.+.+|
T Consensus       258 ~~s~~~~~l~~~~~~~~~~~~  278 (377)
T 3dwl_C          258 LWANESAIVAAGYNYSPILLQ  278 (377)
T ss_dssp             EEEETTEEEEEESSSSEEEEC
T ss_pred             EEcCCCCEEEEEcCCcEEEEE
Confidence            899999999999988877554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=8.4e-36  Score=278.29  Aligned_cols=245  Identities=23%  Similarity=0.371  Sum_probs=213.8

Q ss_pred             eEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC----------CCCccccccCcccceEEEEecccccCCCCC-
Q 012799          144 FKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQT----------GKPSGNPLSGHKKWITGISWEPVHLNAPCR-  211 (456)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-  211 (456)
                      .....|.+.|++++|+|+ +++|++++.||.|++|++.+          .... ..+.+|...|.+++|+|     ++. 
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~-----~~~~  195 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPD-LRLRGHQKEGYGLSWNP-----NLNG  195 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCS-EEEECCSSCCCCEEECT-----TSTT
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCc-EEecCCCCCeEEEEeCC-----CCCC
Confidence            345579999999999997 78999999999999999976          2333 25678999999999999     666 


Q ss_pred             EEEEEeCCCcEEEEECCCCeE-------EEEecCcCccEEEEEeCCC-C-eEEEEeCCCcEEEEECCCC---eEEEEeec
Q 012799          212 RFVSASKDGDARIWDVSLRKC-------VICLSGHTLAVTCVKWGGD-G-VIYTGSQDCTIKVWETTQG---KLIRELKG  279 (456)
Q Consensus       212 ~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~---~~~~~~~~  279 (456)
                      +|++|+.||.|++||+..+..       ...+.+|...|.+++|+|+ + .|++++.||.|++||++++   +.+..+..
T Consensus       196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            999999999999999987321       4566789999999999994 4 8889999999999999987   56777888


Q ss_pred             CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc
Q 012799          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (456)
Q Consensus       280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  359 (456)
                      |...|++++|+|++                                   ...+++|+.||.|++||++....+...+..|
T Consensus       276 ~~~~v~~i~~~p~~-----------------------------------~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h  320 (430)
T 2xyi_A          276 HTAEVNCLSFNPYS-----------------------------------EFILATGSADKTVALWDLRNLKLKLHSFESH  320 (430)
T ss_dssp             CSSCEEEEEECSSC-----------------------------------TTEEEEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred             CCCCeEEEEeCCCC-----------------------------------CCEEEEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence            99999999999973                                   3358999999999999998877777788899


Q ss_pred             cccEeEEEECCCCC-EEEEEECCCcEEEEeCCC--------------CeEEEEEecccccEEEEEeeeeeeecCCCCcee
Q 012799          360 QQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTT--------------GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYC  424 (456)
Q Consensus       360 ~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~  424 (456)
                      ...|++++|+|+++ +|++++.||.|++||+..              .+++..+.+|...|.++                
T Consensus       321 ~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~----------------  384 (430)
T 2xyi_A          321 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF----------------  384 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEE----------------
T ss_pred             CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEE----------------
Confidence            99999999999985 699999999999999987              36778888999999999                


Q ss_pred             eecccccccceeEecCCC-eEEEeeCCCceEEC
Q 012799          425 VVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVT  456 (456)
Q Consensus       425 ~~~~~~~~~~~~~s~dg~-~l~s~s~Dg~v~iW  456 (456)
                                 +|+|+++ +|++++.||.|+||
T Consensus       385 -----------~~~p~~~~~l~s~s~dg~i~iw  406 (430)
T 2xyi_A          385 -----------SWNPNEPWIICSVSEDNIMQVW  406 (430)
T ss_dssp             -----------EECSSSTTEEEEEETTSEEEEE
T ss_pred             -----------EECCCCCCEEEEEECCCCEEEe
Confidence                       9999999 89999999999998

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-37  Score=287.43  Aligned_cols=291  Identities=16%  Similarity=0.181  Sum_probs=229.7

Q ss_pred             EECCCCCeEEEEECCCcEEEEeCCCCcceeEE-ecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC---CCCcc-cc
Q 012799          115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT---GKPSG-NP  188 (456)
Q Consensus       115 ~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~---~~~~~-~~  188 (456)
                      .|+|+++.+++++      .|+ .+++.+..+ .+|.+.|++++|+| ++++|++|+.||.|++||+.+   +.... ..
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  106 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL  106 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence            3678888777664      488 457788888 88999999999999 999999999999999999876   44222 12


Q ss_pred             ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC---CCeEEEEecC------------cCccEEEEE--eCCC
Q 012799          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS---LRKCVICLSG------------HTLAVTCVK--WGGD  251 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~  251 (456)
                      ...|...|.+++|+|     ++.+|++++.||.|++||++   +++.......            +...+.++.  ++++
T Consensus       107 ~~~h~~~v~~~~~~~-----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  181 (437)
T 3gre_A          107 TYDCSSTVTQITMIP-----NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE  181 (437)
T ss_dssp             EEECSSCEEEEEECT-----TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred             eccCCCCEEEEEEeC-----CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence            336899999999999     88999999999999999995   4444333221            445666666  5567


Q ss_pred             C-eEEEEeCCCcEEEEECCCCeEEEEeec--CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799          252 G-VIYTGSQDCTIKVWETTQGKLIRELKG--HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (456)
Q Consensus       252 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (456)
                      + .+++++.||.|++||+++++.+..+..  |...|.+++|+|+                                    
T Consensus       182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~------------------------------------  225 (437)
T 3gre_A          182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE------------------------------------  225 (437)
T ss_dssp             CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT------------------------------------
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC------------------------------------
Confidence            7 999999999999999999999999988  7899999999998                                    


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCcccc-ccccccEeEEEEC----CCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc
Q 012799          329 PERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFS----PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG  403 (456)
Q Consensus       329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~s----p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  403 (456)
                      +.++++|+.||.|++||++... ....+ ..|...|++++|+    |++.+|++|+.||.|++||+.+++.+..+.+|..
T Consensus       226 ~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  304 (437)
T 3gre_A          226 CCVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE  304 (437)
T ss_dssp             SCEEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred             CCEEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence            5669999999999999987744 33333 3778899999655    4688999999999999999999999999999987


Q ss_pred             cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       404 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .+..+.|.+....... ...+.......+..++|+ ++++|++|+.||.|++|
T Consensus       305 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~w  355 (437)
T 3gre_A          305 QPSMEHFLPIEKGLEE-LNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMF  355 (437)
T ss_dssp             CCCGGGGSCBCSSGGG-CCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEE
T ss_pred             CCccceeccccccccc-ceecccccCCceEEEEEC-CceEEEecCCCCeEEEE
Confidence            7766644322111000 000111244557788999 88999999999999999

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-35  Score=276.66  Aligned_cols=255  Identities=18%  Similarity=0.140  Sum_probs=214.3

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc---ceeEEec------------------------------------
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTG------------------------------------  148 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~---~~~~~~~------------------------------------  148 (456)
                      ..++.+++|+|+|++|+++ .++.|++||+.+++   .+..+..                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999977666 57799999999888   5555442                                    


Q ss_pred             ------------------CCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCC--CCCCcccccc--CcccceEEEEecccc
Q 012799          149 ------------------HKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQ--TGKPSGNPLS--GHKKWITGISWEPVH  205 (456)
Q Consensus       149 ------------------~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~~--~~~~~v~~~~~~~~~  205 (456)
                                        |...|.+++|+|++++| ++++.||.|++||+.  +++... .+.  .|...|.+++|+|  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~v~~~~~sp--  159 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLK-LRKRFCFSKRPNAISIAE--  159 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEE-EEEEEECSSCEEEEEECT--
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceee-eeecccCCCCceEEEEcC--
Confidence                              33479999999999996 889999999999998  776554 333  5678899999999  


Q ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCeEEE----EecCcCccEEEEEeCCC---C-eEEEEeCCCcEEEEECCCCeEEEE-
Q 012799          206 LNAPCRRFVSASKDGDARIWDVSLRKCVI----CLSGHTLAVTCVKWGGD---G-VIYTGSQDCTIKVWETTQGKLIRE-  276 (456)
Q Consensus       206 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~-~l~~~~~dg~i~iwd~~~~~~~~~-  276 (456)
                         ++.+|++++.+|.|++|++.+++...    .+.+|...|.+++|+|+   + .|++++.|+.|++||+++++.+.. 
T Consensus       160 ---~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  236 (450)
T 2vdu_B          160 ---DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW  236 (450)
T ss_dssp             ---TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE
T ss_pred             ---CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee
Confidence               89999999999999999998776543    66789999999999999   8 999999999999999999988877 


Q ss_pred             eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc
Q 012799          277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM  356 (456)
Q Consensus       277 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  356 (456)
                      +.+|...|.+++|+ +                                    +.+|++++.|+.|++||+.++... ..+
T Consensus       237 ~~~h~~~v~~~~~s-d------------------------------------~~~l~s~~~d~~v~vwd~~~~~~~-~~~  278 (450)
T 2vdu_B          237 LFGHKHFVSSICCG-K------------------------------------DYLLLSAGGDDKIFAWDWKTGKNL-STF  278 (450)
T ss_dssp             CCCCSSCEEEEEEC-S------------------------------------TTEEEEEESSSEEEEEETTTCCEE-EEE
T ss_pred             ecCCCCceEEEEEC-C------------------------------------CCEEEEEeCCCeEEEEECCCCcEe-eee
Confidence            55899999999999 7                                    667999999999999998776532 222


Q ss_pred             c-------------------------cccccEeEEEECCCCCEEEEEE-CCCcEEEEeC--CCC---eEEEEEecccccE
Q 012799          357 T-------------------------GHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNG--TTG---KFVAVFRGHVGPV  405 (456)
Q Consensus       357 ~-------------------------~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v  405 (456)
                      .                         .....|.+++|+|++++|++++ .|+.|++|++  .++   +.+..+..| +.|
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v  357 (450)
T 2vdu_B          279 DYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNV  357 (450)
T ss_dssp             ECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCE
T ss_pred             cchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cce
Confidence            2                         2345689999999999999999 8999999999  566   777888888 889


Q ss_pred             EEE
Q 012799          406 YQI  408 (456)
Q Consensus       406 ~~i  408 (456)
                      .++
T Consensus       358 ~~~  360 (450)
T 2vdu_B          358 ISL  360 (450)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            999

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.3e-36  Score=279.67  Aligned_cols=286  Identities=19%  Similarity=0.224  Sum_probs=212.7

Q ss_pred             cccEEEEEEeccc-----------eEEEeecc----cccccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCc
Q 012799           78 VEKVLSIVYQPQA-----------VFRIRPVN----RCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQT  141 (456)
Q Consensus        78 ~~~~~~~~~~~~~-----------~~~~~~~~----~~~~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~  141 (456)
                      ...+..+.|+|..           .+++|...    .....+.+|.+.|++++|+| ++++|++|+.||+|++||++++.
T Consensus       119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~  198 (435)
T 4e54_B          119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI  198 (435)
T ss_dssp             SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred             CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence            3457889998732           34566432    23456779999999999998 68999999999999999998765


Q ss_pred             ceeEEe--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCC-EEEEEeC
Q 012799          142 PMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASK  218 (456)
Q Consensus       142 ~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~  218 (456)
                      ......  .+...+.+++|+|++++|++|+.||.|++||++... +. .+.+|...|.+++|+|     ++. ++++++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~-~~~~h~~~v~~v~~~p-----~~~~~~~s~s~  271 (435)
T 4e54_B          199 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LW-NLRMHKKKVTHVALNP-----CCDWFLATASV  271 (435)
T ss_dssp             EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CC-CSBCCSSCEEEEEECT-----TCSSEEEEEET
T ss_pred             eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eE-EEecccceEEeeeecC-----CCceEEEEecC
Confidence            433333  334567899999999999999999999999997543 33 5788999999999998     554 7889999


Q ss_pred             CCcEEEEECCCCeEEEE---ecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcc------eEEEE
Q 012799          219 DGDARIWDVSLRKCVIC---LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW------VNSLA  288 (456)
Q Consensus       219 dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------i~~~~  288 (456)
                      |+.|++||+++.+....   ..+|...|++++|+|++ +|++++.||.|++||+++++....+..|...      +....
T Consensus       272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (435)
T 4e54_B          272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA  351 (435)
T ss_dssp             TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred             cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence            99999999987654333   35789999999999999 9999999999999999998877776554321      23345


Q ss_pred             ecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEE-E
Q 012799          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV-Y  367 (456)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~  367 (456)
                      +++...+.........                        ...++++..++.|++||..++........+|...|.++ +
T Consensus       352 ~~~~~~~~~~~~~~d~------------------------~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~  407 (435)
T 4e54_B          352 WHPRYNLIVVGRYPDP------------------------NFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNE  407 (435)
T ss_dssp             ECSSSSCEEEECCCCT------------------------TSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEE
T ss_pred             EcCCCCEEEEEEcCCC------------------------CeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEE
Confidence            5555433222211111                        11133344567899999877665555556788888887 6


Q ss_pred             ECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799          368 FSPDGQWVASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       368 ~sp~~~~l~s~~~dg~i~iwd~~~~~~~  395 (456)
                      |+|+|++|++|+ |+.|+||++++++..
T Consensus       408 fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          408 FNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             ECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             ECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            999999999876 889999999988753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.3e-35  Score=267.94  Aligned_cols=294  Identities=10%  Similarity=0.091  Sum_probs=210.4

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEe
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWD  178 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd  178 (456)
                      ...++.+|.+.|++++|+|||++||+|+.++ +++|++.+++.......  ..+..+++.++++.+ ++++.|++|++||
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWD   87 (355)
T ss_dssp             --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred             CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence            3446688999999999999999999998775 88999987766554432  357888999988877 4677889999999


Q ss_pred             CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCCCCeEEE-
Q 012799          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYT-  256 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~-  256 (456)
                      ..+++.+.. + .+...|.++.|++       +.++++ .|+.|++||+.++ +.+..+..   +...+++++ ..+++ 
T Consensus        88 ~~~~~~~~~-~-~~~~~v~~v~~~~-------~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~~la~~  153 (355)
T 3vu4_A           88 DVKKQDVSR-I-KVDAPVKDLFLSR-------EFIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-GLLVYS  153 (355)
T ss_dssp             TTTTEEEEE-E-ECSSCEEEEEECS-------SEEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-TEEEEE
T ss_pred             CCCCcEEEE-E-ECCCceEEEEEcC-------CEEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc-cEEEEe
Confidence            999887652 2 3667899999977       345544 4789999999987 55554443   344455666 54444 


Q ss_pred             -EeCCCcEEEEECCCCe---------------E-EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHh
Q 012799          257 -GSQDCTIKVWETTQGK---------------L-IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (456)
Q Consensus       257 -~~~dg~i~iwd~~~~~---------------~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (456)
                       |+.||.|++||+++++               + +..+.+|...|.+++|+|+                           
T Consensus       154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~---------------------------  206 (355)
T 3vu4_A          154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK---------------------------  206 (355)
T ss_dssp             ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT---------------------------
T ss_pred             CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC---------------------------
Confidence             6889999999999865               2 6778899999999999998                           


Q ss_pred             hhhhccCCCCCEEEEEeCCCc-EEEEecCCCCCCccccc-c-ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE-
Q 012799          320 RYNKIKGNAPERLVSGSDDFT-MFLWEPAVSKQPKTRMT-G-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV-  395 (456)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~-~-~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~-  395 (456)
                               +.+|++|+.|++ |++||++++... ..+. + |...|++++|+|+|++|++++.||.|++||+..+... 
T Consensus       207 ---------g~~l~s~s~d~~~v~iwd~~~~~~~-~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~  276 (355)
T 3vu4_A          207 ---------SDMVATCSQDGTIIRVFKTEDGVLV-REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK  276 (355)
T ss_dssp             ---------SSEEEEEETTCSEEEEEETTTCCEE-EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC
T ss_pred             ---------CCEEEEEeCCCCEEEEEECCCCcEE-EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc
Confidence                     667999999998 999998776544 4454 5 9999999999999999999999999999999875321 


Q ss_pred             -EEEecccccEEEEEeeeee---eecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          396 -AVFRGHVGPVYQIRFELIY---CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       396 -~~~~~~~~~v~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                       ..+..+   +....|...+   .+..+.      ........++|++||++|++++.||.+++|
T Consensus       277 ~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~  332 (355)
T 3vu4_A          277 RHALKGW---INMKYFQSEWSLCNFKLSV------DKHVRGCKIAWISESSLVVVWPHTRMIETF  332 (355)
T ss_dssp             SEETTTT---EECCCCCCSSCSEEEECCC------CTTCCCCEEEESSSSEEEEEETTTTEEEEE
T ss_pred             cccccce---eeccccccccceeEEEecc------CCCCCceEEEEeCCCCEEEEEeCCCeEEEE
Confidence             111111   0000000000   000000      011112446999999999999999999886

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-35  Score=268.64  Aligned_cols=269  Identities=11%  Similarity=-0.005  Sum_probs=211.6

Q ss_pred             EEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC---------CC
Q 012799          112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ---------TG  182 (456)
Q Consensus       112 ~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~---------~~  182 (456)
                      ....+.+++.+|++|+.||+|++||+.+++.+..+.  ...|.++.|+|+   +++++.|++|++|+..         ++
T Consensus        40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           40 LNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             ECSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             hhhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence            334455688899999999999999999999888776  466888889888   9999999999999765         34


Q ss_pred             CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CcCccEEEEEeCCCC-eEEEEeCC
Q 012799          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQD  260 (456)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d  260 (456)
                      +.......+|...|.+++|+|..   +++++++++.||.|++||+++++...... .+...+.+++|+|++ .+++|+.|
T Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d  191 (343)
T 3lrv_A          115 KVLREIEVDSANEIIYMYGHNEV---NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD  191 (343)
T ss_dssp             CEEEEEECCCSSCEEEEECCC------CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred             ceeEEeecCCCCCEEEEEcCCCC---CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence            33333344666889999998832   56899999999999999999999877663 455689999999999 88899999


Q ss_pred             CcEEEEECCCCeEE-EEeec-CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799          261 CTIKVWETTQGKLI-RELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (456)
Q Consensus       261 g~i~iwd~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (456)
                      |.|++||+++++.+ ..+.. |..+|.+++|+|+                                    +.++++++. 
T Consensus       192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~------------------------------------g~~l~s~~~-  234 (343)
T 3lrv_A          192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADN------------------------------------GYWMVVECD-  234 (343)
T ss_dssp             SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTT------------------------------------SSEEEEEES-
T ss_pred             CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCC------------------------------------CCEEEEEeC-
Confidence            99999999999887 77887 9999999999998                                    566999994 


Q ss_pred             CcEEEEecCCCCCCcc--ccccccccEe--EEEECCCCCEEEEEEC-CCcEEEEeCCCCeEEEEEecccccEEEEEeeee
Q 012799          339 FTMFLWEPAVSKQPKT--RMTGHQQLVN--HVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI  413 (456)
Q Consensus       339 g~i~iwd~~~~~~~~~--~~~~~~~~v~--~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  413 (456)
                      +.|++||++.......  .+..|...+.  +++|+|+|++|++++. |+.+++|++..+......    .++..+     
T Consensus       235 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~-----  305 (343)
T 3lrv_A          235 QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESAL-----  305 (343)
T ss_dssp             SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEEC-----
T ss_pred             CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeE-----
Confidence            5999999887654322  2222444444  6999999999999998 999999998765443332    455556     


Q ss_pred             eeecCCCCceeeecccccccceeEec---CCCeEEEeeCCCceEEC
Q 012799          414 YCFRYPSNFYCVVDMSCCMSLYSWSA---DSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~s~s~Dg~v~iW  456 (456)
                                            +|++   +++.|++++.||.++++
T Consensus       306 ----------------------~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          306 ----------------------CLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             ----------------------CC----CCCCEEEEEEETTEEEEE
T ss_pred             ----------------------ecCccccccceeEEEecCCceEEE
Confidence                                  7787   88899999999988764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.6e-35  Score=274.04  Aligned_cols=252  Identities=19%  Similarity=0.356  Sum_probs=219.3

Q ss_pred             ccccCCcccEEEEEECCC-CCeEEEEECCCcEEEEeCCC----------CcceeEEecCCCCEEEEEEcCCCC-EEEEEe
Q 012799          102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNT----------QTPMFKCTGHKNWVLCIAWSADGK-HLVSGS  169 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~  169 (456)
                      ..+.+|.+.|++++|+|+ +.+||+++.||.|++|++.+          ......+.+|...|.+++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            345689999999999997 78999999999999999986          577888899999999999999988 999999


Q ss_pred             CCCeEEEEeCCCCCCc------cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC---eEEEEecCcC
Q 012799          170 KAGELQCWDPQTGKPS------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHT  240 (456)
Q Consensus       170 ~dg~i~vwd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~  240 (456)
                      .||.|++|++.++...      ...+.+|...|.+++|+|.    ++..|++++.||.|++||++++   +.+..+..|.
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~----~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  277 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL----HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT  277 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS----CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC----CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence            9999999999875431      2245689999999999983    4578999999999999999977   5677778899


Q ss_pred             ccEEEEEeCCCC--eEEEEeCCCcEEEEECCC-CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799          241 LAVTCVKWGGDG--VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (456)
Q Consensus       241 ~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (456)
                      ..|++++|+|++  .+++|+.||.|++||+++ +..+..+..|...|.+++|+|++                        
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~------------------------  333 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN------------------------  333 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSC------------------------
T ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCC------------------------
Confidence            999999999987  688999999999999998 56788888899999999999983                        


Q ss_pred             HhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-------------CCccccccccccEeEEEECCCCC-EEEEEECCCc
Q 012799          318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-------------QPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKS  383 (456)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~  383 (456)
                                 ...+++++.|+.|++||+....             .......+|...|++++|+|+++ +|++++.||.
T Consensus       334 -----------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~  402 (430)
T 2xyi_A          334 -----------ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI  402 (430)
T ss_dssp             -----------TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             -----------CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence                       3459999999999999987632             34455678899999999999999 8999999999


Q ss_pred             EEEEeCCCC
Q 012799          384 IKLWNGTTG  392 (456)
Q Consensus       384 i~iwd~~~~  392 (456)
                      |++|++...
T Consensus       403 i~iw~~~~~  411 (430)
T 2xyi_A          403 MQVWQMAEN  411 (430)
T ss_dssp             EEEEEECHH
T ss_pred             EEEeEcccc
Confidence            999998753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=251.47  Aligned_cols=258  Identities=20%  Similarity=0.305  Sum_probs=220.5

Q ss_pred             eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC---cceeEEecCCCCEEEEEEcCCCCEE
Q 012799           91 VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSADGKHL  165 (456)
Q Consensus        91 ~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l  165 (456)
                      .+++|..  ......+.+|...|.+++|+|++++|++++.||.|++|++...   +....+.+|...|.+++|  +++++
T Consensus        40 ~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l  117 (313)
T 3odt_A           40 TVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVV  117 (313)
T ss_dssp             EEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEE
T ss_pred             cEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEE
Confidence            3444543  3456778899999999999999999999999999999998654   567778899999999999  67799


Q ss_pred             EEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-cCccEE
Q 012799          166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-HTLAVT  244 (456)
Q Consensus       166 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~  244 (456)
                      ++++.||.|++||  .++... .+..|...+.++.|.|.    +++.+++++.||.|++||  ..+....+.. |...+.
T Consensus       118 ~~~~~d~~i~~~d--~~~~~~-~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~  188 (313)
T 3odt_A          118 ISGSWDKTAKVWK--EGSLVY-NLQAHNASVWDAKVVSF----SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVR  188 (313)
T ss_dssp             EEEETTSEEEEEE--TTEEEE-EEECCSSCEEEEEEEET----TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEE
T ss_pred             EEEeCCCCEEEEc--CCcEEE-ecccCCCceeEEEEccC----CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEE
Confidence            9999999999999  333333 56779999999999873    678999999999999999  5566667766 899999


Q ss_pred             EEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799          245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (456)
Q Consensus       245 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (456)
                      +++|+|++.+++++.||.|++||+++++.+..+..|...+.+++++|+                                
T Consensus       189 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--------------------------------  236 (313)
T 3odt_A          189 HLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN--------------------------------  236 (313)
T ss_dssp             EEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT--------------------------------
T ss_pred             EEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC--------------------------------
Confidence            999999999999999999999999999999999999999999999997                                


Q ss_pred             cCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 012799          325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (456)
Q Consensus       325 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  398 (456)
                          + .+++++.||.|++||+.... ....+..|...|.+++|+|+++ +++++.||.|++||+++++.+...
T Consensus       237 ----~-~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          237 ----G-DIVSCGEDRTVRIWSKENGS-LKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             ----S-CEEEEETTSEEEEECTTTCC-EEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred             ----C-CEEEEecCCEEEEEECCCCc-eeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence                3 48999999999999977654 5566778889999999999998 567899999999999988765543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.2e-33  Score=250.43  Aligned_cols=266  Identities=26%  Similarity=0.436  Sum_probs=220.9

Q ss_pred             EEEEEEeccceEEEeec--ccccccc--cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEE
Q 012799           81 VLSIVYQPQAVFRIRPV--NRCSATI--AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCI  156 (456)
Q Consensus        81 ~~~~~~~~~~~~~~~~~--~~~~~~l--~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~  156 (456)
                      ++.+..  +..+++|..  +++.+.+  .+|...|++++|+|++++||+|+.||+|++||+.+++.+..+.+|...+.++
T Consensus        38 ~lAvg~--D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~  115 (318)
T 4ggc_A           38 VLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL  115 (318)
T ss_dssp             EEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             EEEEEe--CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEe
Confidence            444433  455677764  3455544  5788999999999999999999999999999999999999999999998877


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE----
Q 012799          157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC----  232 (456)
Q Consensus       157 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----  232 (456)
                      .+  ++..+++++.++.+++|+...+......+.+|...+..+.+.+     ++.++++++.||.|++||+++++.    
T Consensus       116 ~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~  188 (318)
T 4ggc_A          116 SW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSAPGEGGWVP  188 (318)
T ss_dssp             EE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESSCBTTBSCC
T ss_pred             ec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-----CCCEEEEEecCcceeEEECCCCcccccc
Confidence            66  5679999999999999999888766667788999999999998     889999999999999999987643    


Q ss_pred             EEEecCcCccEEEEEeCCCC--e--EEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccC
Q 012799          233 VICLSGHTLAVTCVKWGGDG--V--IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (456)
Q Consensus       233 ~~~~~~~~~~v~~~~~~~~~--~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  308 (456)
                      ......+...|.++.+.+.+  .  +++++.++.|++||.+......... +...+..+.+++.                
T Consensus       189 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~----------------  251 (318)
T 4ggc_A          189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPH----------------  251 (318)
T ss_dssp             SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETT----------------
T ss_pred             eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeeccc----------------
Confidence            34556688899999999876  3  3456778999999999887766655 6667888888887                


Q ss_pred             ChHHHHHHHHhhhhhccCCCCCEEEE--EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEE
Q 012799          309 SPEEMKKAALERYNKIKGNAPERLVS--GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL  386 (456)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i  386 (456)
                                          +..+++  |+.|+.|++||+++. ..+..+.+|.+.|++++|+|+|++|++|+.||+|+|
T Consensus       252 --------------------~~~~~~~sg~~d~~i~iwd~~~~-~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~i  310 (318)
T 4ggc_A          252 --------------------YKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL  310 (318)
T ss_dssp             --------------------TTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred             --------------------ccceEEEEEcCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence                                333444  447999999997765 456678899999999999999999999999999999


Q ss_pred             EeCCCCe
Q 012799          387 WNGTTGK  393 (456)
Q Consensus       387 wd~~~~~  393 (456)
                      ||+.+..
T Consensus       311 Wd~~~~d  317 (318)
T 4ggc_A          311 WRCFELD  317 (318)
T ss_dssp             ECCSCCC
T ss_pred             EECCCCC
Confidence            9997653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=9.6e-35  Score=269.09  Aligned_cols=252  Identities=18%  Similarity=0.273  Sum_probs=214.3

Q ss_pred             ccccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCC-------cceeEEecCCCCEEEEEEcCCC-CEEEEEeC
Q 012799          100 CSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADG-KHLVSGSK  170 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~  170 (456)
                      ....+.+|.+.|++++|+| ++++||+|+.||+|++||+.++       +++..+.+|...|.+++|+|++ ++|++++.
T Consensus        73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~  152 (402)
T 2aq5_A           73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC  152 (402)
T ss_dssp             TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred             CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence            4567889999999999999 9999999999999999999987       6678889999999999999998 69999999


Q ss_pred             CCeEEEEeCCCCCCccccc-cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCcCcc-EEEEE
Q 012799          171 AGELQCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLA-VTCVK  247 (456)
Q Consensus       171 dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~~~  247 (456)
                      ||.|++||+++++...... ..|...|.+++|+|     ++.+|++++.||.|++||+++++.+..+ ..|... +.++.
T Consensus       153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  227 (402)
T 2aq5_A          153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-----DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV  227 (402)
T ss_dssp             TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-----TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEE
T ss_pred             CCEEEEEECCCCCccEEEecCCCCCceEEEEECC-----CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEE
Confidence            9999999999988765322 77999999999999     8999999999999999999999999888 778765 89999


Q ss_pred             eCCCC-eEEEE---eCCCcEEEEECCCCeE-EEEee-cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799          248 WGGDG-VIYTG---SQDCTIKVWETTQGKL-IRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (456)
Q Consensus       248 ~~~~~-~l~~~---~~dg~i~iwd~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (456)
                      |+|++ .+++|   +.|+.|++||+++++. +.... .+...+.+++|+|+                             
T Consensus       228 ~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-----------------------------  278 (402)
T 2aq5_A          228 FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD-----------------------------  278 (402)
T ss_dssp             ECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT-----------------------------
T ss_pred             EcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC-----------------------------
Confidence            99999 66666   6899999999998654 22222 46677999999998                             


Q ss_pred             hhccCCCCCEEE-EEeCCCcEEEEecCCCCCCcccccc--ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799          322 NKIKGNAPERLV-SGSDDFTMFLWEPAVSKQPKTRMTG--HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF  394 (456)
Q Consensus       322 ~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~  394 (456)
                             +.+++ +|+.|+.|++||+.........+..  |...|.+++|+|++.++++  .++.+++|++.+++.
T Consensus       279 -------~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          279 -------TNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             -------TTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             -------CCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence                   44465 5668999999998877653444443  4589999999999998775  467999999988754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-36  Score=276.04  Aligned_cols=278  Identities=15%  Similarity=0.131  Sum_probs=224.5

Q ss_pred             CcCcccEEEEEEeccceEEEeecc--ccccccc-CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCC
Q 012799           75 KVSVEKVLSIVYQPQAVFRIRPVN--RCSATIA-GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN  151 (456)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~-~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~  151 (456)
                      +.+...+..+.|.|+...+.+...  +....+. +|.+.|.+++|||+|++||+++.||.|++||.++  .+..+. |..
T Consensus        49 ~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~  125 (588)
T 2j04_A           49 NCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG  125 (588)
T ss_dssp             SSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS
T ss_pred             cCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC
Confidence            357778899999998855443332  2223343 6689999999999999999999999999999654  555556 665


Q ss_pred             -----CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC------cccc----ccCcccceEEEEecccccCCCCCEEEEE
Q 012799          152 -----WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP------SGNP----LSGHKKWITGISWEPVHLNAPCRRFVSA  216 (456)
Q Consensus       152 -----~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------~~~~----~~~~~~~v~~~~~~~~~~~~~~~~l~~~  216 (456)
                           .|.+++|+|||++||+|+.||+|++||+.++..      ....    ..+|...|.+++|+|     +|  ++++
T Consensus       126 ~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-----dg--Laas  198 (588)
T 2j04_A          126 NLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-----DV--LVAA  198 (588)
T ss_dssp             CSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-----TE--EEEE
T ss_pred             ccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-----Cc--EEEE
Confidence                 599999999999999999999999999998753      1112    267889999999999     77  8899


Q ss_pred             eCCCcEEEEECCCCeE---EEEe-cCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEe--c
Q 012799          217 SKDGDARIWDVSLRKC---VICL-SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLAL--S  290 (456)
Q Consensus       217 ~~dg~i~iwd~~~~~~---~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~--~  290 (456)
                      +.|+.|++||+..+..   ...+ .+|...|.+++|+ +..+++++ +++|++||+.+++......+|...+..+++  +
T Consensus       199 s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s  276 (588)
T 2j04_A          199 LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHE  276 (588)
T ss_dssp             ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTC
T ss_pred             eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeC
Confidence            9999999999988773   3456 4788999999999 45788776 699999999988774444479999999999  8


Q ss_pred             CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC
Q 012799          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (456)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp  370 (456)
                      |+                                    +..+++++.||+ ++|...                 .++++|
T Consensus       277 ~d------------------------------------~~~La~a~edG~-klw~~d-----------------~~~~sp  302 (588)
T 2j04_A          277 KE------------------------------------STILLMSNKTSY-KVLLED-----------------ELHVTA  302 (588)
T ss_dssp             SS------------------------------------CEEEEECSSCEE-EEEESS-----------------SEEEEC
T ss_pred             CC------------------------------------CCEEEEEcCCCC-EEEeec-----------------cEEECC
Confidence            87                                    455999999999 999965                 266999


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799          371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (456)
Q Consensus       371 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~  449 (456)
                      |+..+++.  |+++++|+...+. +..+++ ...|+++                           +|||||+.+|+++.
T Consensus       303 d~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~v---------------------------a~SPdG~~lA~~~~  350 (588)
T 2j04_A          303 DNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGI---------------------------SLSPDGYSIAIVYD  350 (588)
T ss_dssp             CCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEE---------------------------EECTTSSEEEEEEE
T ss_pred             CceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEE---------------------------EECCCCCEEEEEEe
Confidence            99888775  9999999975444 444544 6678888                           89999999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=262.34  Aligned_cols=281  Identities=22%  Similarity=0.270  Sum_probs=202.4

Q ss_pred             cCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC---CCEEEEEeCCCeEEEEeCC
Q 012799          105 AGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD---GKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       105 ~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~  180 (456)
                      .+|...|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|++.   +.++++++.||.|++||++
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            36999999999999 77899999999999999999988887776 7888999999984   4599999999999999999


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCC-EEEEEeCCCcEEEEECCCCe-EEEEe---------------cCcCccE
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLRK-CVICL---------------SGHTLAV  243 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~v  243 (456)
                      +++... .+..|...|.+++|+|     ++. .+++++.||.|++||++++. ++..+               ..|...|
T Consensus       175 ~~~~~~-~~~~~~~~v~~~~~~~-----~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  248 (408)
T 4a11_B          175 SGSCSH-ILQGHRQEILAVSWSP-----RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV  248 (408)
T ss_dssp             SSCCCE-EECCCCSCEEEEEECS-----SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred             Ccceee-eecCCCCcEEEEEECC-----CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence            887765 5778999999999999     777 58999999999999998765 33333               4688999


Q ss_pred             EEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcc--eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799          244 TCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW--VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (456)
Q Consensus       244 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (456)
                      .+++|+|++ .+++++.||.|++||+++++....+..+...  ...+.+.                              
T Consensus       249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------  298 (408)
T 4a11_B          249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT------------------------------  298 (408)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCE------------------------------
T ss_pred             eEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeE------------------------------
Confidence            999999999 8999999999999999988765443322110  0000000                              


Q ss_pred             hhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       321 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                         ........+++++.++.|++||+... .....+.+|...|++++|+|++++|++|+.||.|++||+.+++.+.....
T Consensus       299 ---~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  374 (408)
T 4a11_B          299 ---VSCGCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE  374 (408)
T ss_dssp             ---ECCSSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------
T ss_pred             ---EecCCCceEEEEecCCEEEEEECcCC-cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence               00012345788889999999997664 45667789999999999999999999999999999999999887765543


Q ss_pred             ccccEEEEEeeeeeeecCCCCceeeecccccccceeEec-CCCeEEEeeCCCceEEC
Q 012799          401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       401 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~s~s~Dg~v~iW  456 (456)
                      +....                              .+.+ +...+.+++.|+.+++|
T Consensus       375 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~W  401 (408)
T 4a11_B          375 TTTKS------------------------------QLNPAFEDAWSSSDEEGGTSAW  401 (408)
T ss_dssp             ---------------------------------------------------------
T ss_pred             eEecc------------------------------ccccccceeecccCccCceeec
Confidence            32221                              2222 33456677889999999

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.6e-34  Score=265.92  Aligned_cols=268  Identities=17%  Similarity=0.202  Sum_probs=211.1

Q ss_pred             EeCCCCcceeEEecCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCccccc-cCcccceEEEEecccccCCCCCE
Q 012799          135 WDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRR  212 (456)
Q Consensus       135 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~  212 (456)
                      |++.+.+....+.+|...|.+++|+|++ ++|++|+.||.|++||+.+++...... .+|...|.+++|+|.    ++.+
T Consensus        58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~  133 (383)
T 3ei3_B           58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF----NTNQ  133 (383)
T ss_dssp             HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT----EEEE
T ss_pred             ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC----CCCE
Confidence            3344555666788999999999999998 999999999999999999887654322 479999999999982    3579


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEecC---cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEE
Q 012799          213 FVSASKDGDARIWDVSLRKCVICLSG---HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA  288 (456)
Q Consensus       213 l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  288 (456)
                      +++++.|+.|++||++. ..+..+..   +...|.+++|+|++ .+++++.||.|++||+ +++.+..+..|...|.+++
T Consensus       134 l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~  211 (383)
T 3ei3_B          134 LFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAE  211 (383)
T ss_dssp             EEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred             EEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence            99999999999999986 44444433   44889999999999 9999999999999999 5778889999999999999


Q ss_pred             ecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCC-EEEEEeCCCcEEEEecCCCCC--CccccccccccEeE
Q 012799          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-RLVSGSDDFTMFLWEPAVSKQ--PKTRMTGHQQLVNH  365 (456)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~  365 (456)
                      |+|+                                    +. ++++++.|+.|++||++....  ......+|...|.+
T Consensus       212 ~~~~------------------------------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  255 (383)
T 3ei3_B          212 FNPR------------------------------------CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNA  255 (383)
T ss_dssp             ECSS------------------------------------CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEE
T ss_pred             ECCC------------------------------------CCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEE
Confidence            9998                                    34 699999999999999876432  12222379999999


Q ss_pred             EEECC-CCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeE
Q 012799          366 VYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL  444 (456)
Q Consensus       366 ~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  444 (456)
                      ++|+| ++++|++++.||.|++||+.+++.+..+.+|......-          .............+..++|+|||++ 
T Consensus       256 ~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~p~~~~~~~~~s~dg~~-  324 (383)
T 3ei3_B          256 AYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH----------LTPIKATWHPMYDLIVAGRYPDDQL-  324 (383)
T ss_dssp             EEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT----------SCCCCCEECSSSSEEEEECBCCTTT-
T ss_pred             EEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc----------ccceEEeccCCCCceEEEecCCccc-
Confidence            99999 99999999999999999999988877777654321100          0000000011112223478899888 


Q ss_pred             EEeeCCCceEEC
Q 012799          445 LSGSKDSTLKVT  456 (456)
Q Consensus       445 ~s~s~Dg~v~iW  456 (456)
                       +|+.||.|+||
T Consensus       325 -s~s~d~~i~iw  335 (383)
T 3ei3_B          325 -LLNDKRTIDIY  335 (383)
T ss_dssp             -CTTCCCCEEEE
T ss_pred             -ccCCCCeEEEE
Confidence             89999999998

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.8e-34  Score=268.69  Aligned_cols=255  Identities=27%  Similarity=0.488  Sum_probs=218.1

Q ss_pred             eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE
Q 012799           91 VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG  168 (456)
Q Consensus        91 ~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  168 (456)
                      .+++|..  +++...+.+|.+.|.+++|  ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+  +.++++|
T Consensus       154 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~  229 (435)
T 1p22_A          154 TIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTC  229 (435)
T ss_dssp             CEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEE
T ss_pred             eEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEe
Confidence            4455543  4567789999999999999  78899999999999999999999999999999999999996  4599999


Q ss_pred             eCCCeEEEEeCCCCCCcc--ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEE
Q 012799          169 SKAGELQCWDPQTGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV  246 (456)
Q Consensus       169 ~~dg~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  246 (456)
                      +.||.|++||+.++....  ....+|...|.+++|       +++++++|+.||.|++||+++++.+..+.+|...|.++
T Consensus       230 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  302 (435)
T 1p22_A          230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-------DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL  302 (435)
T ss_dssp             ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-------ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             eCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-------CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEE
Confidence            999999999999877542  357789999999998       45799999999999999999999999999999999999


Q ss_pred             EeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799          247 KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (456)
Q Consensus       247 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (456)
                      .+++ ..+++|+.||.|++||+++++.+..+.+|...|.++++.                                    
T Consensus       303 ~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~------------------------------------  345 (435)
T 1p22_A          303 QYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD------------------------------------  345 (435)
T ss_dssp             EEET-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECC------------------------------------
T ss_pred             EeCC-CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEec------------------------------------
Confidence            9953 399999999999999999999999999999999999983                                    


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCC--------CccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE
Q 012799          327 NAPERLVSGSDDFTMFLWEPAVSKQ--------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV  397 (456)
Q Consensus       327 ~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  397 (456)
                        +.++++|+.||.|++||+.....        ....+.+|...|.+++|  ++++|++|+.||.|++||+.+......
T Consensus       346 --~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~  420 (435)
T 1p22_A          346 --NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQA  420 (435)
T ss_dssp             --SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---------
T ss_pred             --CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCccc
Confidence              44699999999999999765431        45567789999999999  788999999999999999988765443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.9e-34  Score=262.58  Aligned_cols=243  Identities=13%  Similarity=0.164  Sum_probs=196.0

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEE-----------CCCcEEEEeCCCCcceeEE---------ecCCCCEEEEEEcCCC
Q 012799          103 TIAGHTEAVLSVAFSPDGRQLASGS-----------GDTTVRLWDLNTQTPMFKC---------TGHKNWVLCIAWSADG  162 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~~~~~l~~~~-----------~d~~v~vwd~~~~~~~~~~---------~~~~~~v~~~~~~~~~  162 (456)
                      .|.+|.+.|.+++++  ++.+++|+           .|+++++|++.+.......         ..+...+.+++|+|||
T Consensus        68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg  145 (365)
T 4h5i_A           68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG  145 (365)
T ss_dssp             ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred             EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence            577899999888775  45666653           5778999998765432221         2345668999999999


Q ss_pred             CEEEEEe--CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE--ecC
Q 012799          163 KHLVSGS--KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC--LSG  238 (456)
Q Consensus       163 ~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~  238 (456)
                      +++++++  .|++|++||+++++....  ..|...|.+++|+|     +|+++++++.+ .+.+|+..+++.+..  ...
T Consensus       146 ~~la~as~~~d~~i~iwd~~~~~~~~~--~~~~~~V~~v~fsp-----dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~  217 (365)
T 4h5i_A          146 TVAAIASSKVPAIMRIIDPSDLTEKFE--IETRGEVKDLHFST-----DGKVVAYITGS-SLEVISTVTGSCIARKTDFD  217 (365)
T ss_dssp             SCEEEEESCSSCEEEEEETTTTEEEEE--EECSSCCCEEEECT-----TSSEEEEECSS-CEEEEETTTCCEEEEECCCC
T ss_pred             CEEEEEECCCCCEEEEeECCCCcEEEE--eCCCCceEEEEEcc-----CCceEEeccce-eEEEEEeccCcceeeeecCC
Confidence            9987554  689999999999887653  34778899999999     99999999865 566777666665543  356


Q ss_pred             cCccEEEEEeCCCC-eEEEEeCCC----cEEEEECCCCeE----EEEeecCCcceEEEEecCcceeeeccccCCCCccCC
Q 012799          239 HTLAVTCVKWGGDG-VIYTGSQDC----TIKVWETTQGKL----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS  309 (456)
Q Consensus       239 ~~~~v~~~~~~~~~-~l~~~~~dg----~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  309 (456)
                      |...|.+++|+|++ .+++++.|+    .++.||+.....    ...+..|...|++++|+|+                 
T Consensus       218 ~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd-----------------  280 (365)
T 4h5i_A          218 KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK-----------------  280 (365)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT-----------------
T ss_pred             CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCC-----------------
Confidence            88899999999999 888888877    688899877653    3456778899999999998                 


Q ss_pred             hHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799          310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (456)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  389 (456)
                                         +++|++|+.|+.|++||+.+.+.....+.+|...|++++|+|||++||+|+.|++|+|||+
T Consensus       281 -------------------g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          281 -------------------GELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             -------------------SCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             -------------------CCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence                               6679999999999999987766554556899999999999999999999999999999998


Q ss_pred             CC
Q 012799          390 TT  391 (456)
Q Consensus       390 ~~  391 (456)
                      ..
T Consensus       342 p~  343 (365)
T 4h5i_A          342 PL  343 (365)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-35  Score=291.15  Aligned_cols=259  Identities=20%  Similarity=0.316  Sum_probs=210.4

Q ss_pred             eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG--KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (456)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~  221 (456)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++||+.++  +.. ..+.+|...|.+++|+|..   +++++++|+.||.
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~-~~l~~h~~~V~~l~~s~~~---~~~~l~s~s~Dg~   78 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI-DTLTGHEGPVWRVDWAHPK---FGTILASCSYDGK   78 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE-EEECCCSSCEEEEEECCTT---SCSEEEEEETTSC
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc-eeccCCcCceEEEEecCCC---CCCEEEEEeCCCe
Confidence            456789999999999999999999999999999999743  333 3577899999999998821   2899999999999


Q ss_pred             EEEEECCCCe--EEEEecCcCccEEEEEeCCC--C-eEEEEeCCCcEEEEECCCCe--EEEEeecCCcceEEEEecCcce
Q 012799          222 ARIWDVSLRK--CVICLSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEYA  294 (456)
Q Consensus       222 i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~  294 (456)
                      |++||+.+++  .+..+.+|...|.+++|+|+  + .+++|+.||.|++||++++.  ....+..|...|.++.|+|...
T Consensus        79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~  158 (753)
T 3jro_A           79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (753)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred             EEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence            9999999987  77788899999999999998  7 99999999999999998873  3455677899999999998521


Q ss_pred             eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC---CccccccccccEeEEEECCC
Q 012799          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSPD  371 (456)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~sp~  371 (456)
                      ...+.                       ....+++..+++|+.||.|++||++....   ....+.+|...|++++|+|+
T Consensus       159 ~~~~~-----------------------~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  215 (753)
T 3jro_A          159 EEDGE-----------------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  215 (753)
T ss_dssp             -------------------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             ccccc-----------------------cccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence            10000                       00011256799999999999999877643   34456789999999999999


Q ss_pred             ---CCEEEEEECCCcEEEEeCCCCe-----EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCe
Q 012799          372 ---GQWVASASFDKSIKLWNGTTGK-----FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL  443 (456)
Q Consensus       372 ---~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  443 (456)
                         +++|++|+.||.|++||+.+++     .+.....|...|+++                           +|+|+|++
T Consensus       216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l---------------------------~~spdg~~  268 (753)
T 3jro_A          216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA---------------------------SWSLSGNV  268 (753)
T ss_dssp             CSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCE---------------------------EECTTTCC
T ss_pred             CCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEE---------------------------EEcCCCCE
Confidence               8999999999999999998864     233334577788888                           99999999


Q ss_pred             EEEeeCCCceEEC
Q 012799          444 LLSGSKDSTLKVT  456 (456)
Q Consensus       444 l~s~s~Dg~v~iW  456 (456)
                      |++|+.||.|+||
T Consensus       269 l~s~s~Dg~I~vw  281 (753)
T 3jro_A          269 LALSGGDNKVTLW  281 (753)
T ss_dssp             EEEECSSSCEECC
T ss_pred             EEEEcCCCEEEEE
Confidence            9999999999999

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=271.44  Aligned_cols=255  Identities=15%  Similarity=0.289  Sum_probs=199.1

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC----------ccccccCcc------------cceEEEEecccc
Q 012799          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----------SGNPLSGHK------------KWITGISWEPVH  205 (456)
Q Consensus       148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----------~~~~~~~~~------------~~v~~~~~~~~~  205 (456)
                      .+.+.|++++|+|++++|++|+.||.|++||+.+++.          ....+.+|.            ..|.+++|+|  
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~--  103 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP--  103 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC--
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC--
Confidence            3678999999999999999999999999999988762          223566787            8899999999  


Q ss_pred             cCCCC--CEEEEEeCCCcEEEEECCCCeEE---------------------------------------EE-ecCcCccE
Q 012799          206 LNAPC--RRFVSASKDGDARIWDVSLRKCV---------------------------------------IC-LSGHTLAV  243 (456)
Q Consensus       206 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v  243 (456)
                         ++  ..|++++.|+.|++||+.++...                                       .. ..+|...|
T Consensus       104 ---~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          104 ---QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             ---CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             ---CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence               66  79999999999999999765432                                       12 36799999


Q ss_pred             EEEEeCCCC-eEEEEeCCCcEEEEECCC-CeEEE-------EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799          244 TCVKWGGDG-VIYTGSQDCTIKVWETTQ-GKLIR-------ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (456)
Q Consensus       244 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (456)
                      .+++|+|++ .|++| .||.|++||+++ ++.+.       .+..|...|.+++|+|++                     
T Consensus       181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---------------------  238 (447)
T 3dw8_B          181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS---------------------  238 (447)
T ss_dssp             CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSC---------------------
T ss_pred             EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCC---------------------
Confidence            999999999 77777 899999999994 44444       255788999999999982                     


Q ss_pred             HHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC---ccccccccc------------cEeEEEECCCCCEEEEEE
Q 012799          315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---KTRMTGHQQ------------LVNHVYFSPDGQWVASAS  379 (456)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~------------~v~~~~~sp~~~~l~s~~  379 (456)
                                    ..++++|+.||.|++||++.....   ...+..|..            .|.+++|+|+|++|++++
T Consensus       239 --------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  304 (447)
T 3dw8_B          239 --------------CNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD  304 (447)
T ss_dssp             --------------TTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred             --------------CcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence                          267999999999999998876542   455666665            899999999999999999


Q ss_pred             CCCcEEEEeCCC-CeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          380 FDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       380 ~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      . |.|++||+++ ++++..+.+|...+..+..            ....+.-..+..++|+|++++|++|+.||.|+||
T Consensus       305 ~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iw  369 (447)
T 3dw8_B          305 Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCS------------LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF  369 (447)
T ss_dssp             S-SEEEEEETTCCSSCSCCEESCGGGTTTHHH------------HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEE
T ss_pred             C-CeEEEEeCCCCccccceeeccccccccccc------------cccccccccceEEEECCCCCEEEEeccCCEEEEE
Confidence            8 9999999997 8888888888643221000            0000000001113899999999999999999998

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=9.2e-33  Score=258.53  Aligned_cols=281  Identities=15%  Similarity=0.129  Sum_probs=231.8

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee-----EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  176 (456)
                      ..+..+. .+.+++|+|++.++++++.++.|++||+.+++...     .+.+|...|.+++|+++++++++++.|+.|++
T Consensus       117 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~  195 (433)
T 3bws_A          117 SRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHV  195 (433)
T ss_dssp             EEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEE
T ss_pred             EEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEE
Confidence            3444443 45699999988888888889999999999988776     34578899999999999999999999999999


Q ss_pred             EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (456)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l  254 (456)
                      ||+++++... .+..|...+.+++|+|     +++.++++ +.|+.|++||+++++.+..+..+ ..+.+++|+|++ .+
T Consensus       196 ~d~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l  268 (433)
T 3bws_A          196 FDLKTLAYKA-TVDLTGKWSKILLYDP-----IRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKEL  268 (433)
T ss_dssp             EETTTCCEEE-EEECSSSSEEEEEEET-----TTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEE
T ss_pred             EECCCceEEE-EEcCCCCCeeEEEEcC-----CCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEE
Confidence            9999887665 4557888999999999     88877554 47999999999999988887654 458999999999 77


Q ss_pred             EEEe--------CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799          255 YTGS--------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (456)
Q Consensus       255 ~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (456)
                      ++++        .||.|++||+++++.+..+. +...+..++++|++                                 
T Consensus       269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g---------------------------------  314 (433)
T 3bws_A          269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTE---------------------------------  314 (433)
T ss_dssp             EEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSST---------------------------------
T ss_pred             EEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCC---------------------------------
Confidence            7777        48899999999998877664 45578889999873                                 


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEEC---------------CCcEEEEeCCC
Q 012799          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---------------DKSIKLWNGTT  391 (456)
Q Consensus       327 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~---------------dg~i~iwd~~~  391 (456)
                        ...+++++.++.|++||+.... ....+ .+...+.+++|+|+|++|++++.               ||.|++||+.+
T Consensus       315 --~~l~~~~~~~~~v~v~d~~~~~-~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~  390 (433)
T 3bws_A          315 --NKIYVSDMCCSKIEVYDLKEKK-VQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT  390 (433)
T ss_dssp             --TEEEEEETTTTEEEEEETTTTE-EEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred             --CEEEEEecCCCEEEEEECCCCc-EEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence              1246777899999999987543 33333 36677999999999999888876               57999999999


Q ss_pred             CeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC-CCceEEC
Q 012799          392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVT  456 (456)
Q Consensus       392 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~-Dg~v~iW  456 (456)
                      ++.+..+..+ ..+.++                           +|+|+|++|++++. |+.|++|
T Consensus       391 ~~~~~~~~~~-~~~~~~---------------------------~~s~dg~~l~~~~~~d~~i~v~  428 (433)
T 3bws_A          391 DTVKEFWEAG-NQPTGL---------------------------DVSPDNRYLVISDFLDHQIRVY  428 (433)
T ss_dssp             TEEEEEEECS-SSEEEE---------------------------EECTTSCEEEEEETTTTEEEEE
T ss_pred             CcEEEEecCC-CCCceE---------------------------EEcCCCCEEEEEECCCCeEEEE
Confidence            9999888864 467888                           89999999998875 9999998

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.9e-34  Score=257.92  Aligned_cols=239  Identities=15%  Similarity=0.124  Sum_probs=208.5

Q ss_pred             EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--ccccccCcccceEEEEecccccCCCCC-EEEEEeCCCcE
Q 012799          146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDA  222 (456)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i  222 (456)
                      ..+|.+.|.+++|+|++++|++++.||.|++|++.+++.  .......|...|.+++|+|     +++ ++++++.||.|
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i   81 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-----NTDLQIYVGTVQGEI   81 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-----SSSEEEEEEETTSCE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-----CCCcEEEEEcCCCeE
Confidence            347999999999999999999999999999999988771  1123558899999999999     889 99999999999


Q ss_pred             EEEEC-CCCeEEEEecC--cCccEEEEEeCCCCeEEEEeCCCcEEEEECCC---------CeEEEEeecCCcceEEEEec
Q 012799          223 RIWDV-SLRKCVICLSG--HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ---------GKLIRELKGHGHWVNSLALS  290 (456)
Q Consensus       223 ~iwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~~  290 (456)
                      ++||+ .+++. ..+.+  |...|.+++|+|...+++++.||.|++||+++         ++++..+. +...+.+++++
T Consensus        82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~  159 (342)
T 1yfq_A           82 LKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTN  159 (342)
T ss_dssp             EEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEEC
T ss_pred             EEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEec
Confidence            99999 77754 67778  99999999999933999999999999999987         66666666 78889999998


Q ss_pred             CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCC-CCC-CccccccccccEeEEEE
Q 012799          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV-SKQ-PKTRMTGHQQLVNHVYF  368 (456)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~v~~~~~  368 (456)
                      ++.                                      +++++.|+.|++||++. ... .......|...+.+++|
T Consensus       160 ~~~--------------------------------------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~  201 (342)
T 1yfq_A          160 SSR--------------------------------------LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL  201 (342)
T ss_dssp             SSE--------------------------------------EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred             CCc--------------------------------------EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence            762                                      89999999999999887 443 33345578889999999


Q ss_pred             CC-CCCEEEEEECCCcEEEEeCCCC------eEEEEEecccc---------cEEEEEeeeeeeecCCCCceeeecccccc
Q 012799          369 SP-DGQWVASASFDKSIKLWNGTTG------KFVAVFRGHVG---------PVYQIRFELIYCFRYPSNFYCVVDMSCCM  432 (456)
Q Consensus       369 sp-~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~---------~v~~i~~~~~~~~~~~~~~~~~~~~~~~~  432 (456)
                      +| +++++++++.||.|++|++...      +....+..|..         .|.++                        
T Consensus       202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------------------  257 (342)
T 1yfq_A          202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI------------------------  257 (342)
T ss_dssp             CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE------------------------
T ss_pred             CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEE------------------------
Confidence            99 9999999999999999999887      77888888865         89998                        


Q ss_pred             cceeEecCCCeEEEeeCCCceEEC
Q 012799          433 SLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       433 ~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                         +|+|++++|++|+.||.|++|
T Consensus       258 ---~~s~~~~~l~~~~~dg~i~vw  278 (342)
T 1yfq_A          258 ---EFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             ---EECTTTCCEEEEETTSCEEEE
T ss_pred             ---EEcCCCCEEEEecCCceEEEE
Confidence               899999999999999999998

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=6.4e-34  Score=262.09  Aligned_cols=254  Identities=12%  Similarity=0.103  Sum_probs=171.9

Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCCCc----cccccCcccceEEEEeccccc---CCCCCEEEEEeCCCcEEEEECCCCe
Q 012799          159 SADGKHLVSGSKAGELQCWDPQTGKPS----GNPLSGHKKWITGISWEPVHL---NAPCRRFVSASKDGDARIWDVSLRK  231 (456)
Q Consensus       159 ~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~  231 (456)
                      .+++.+|++++.|++|++||.++++..    ...+.+|...|.+++|+|...   ..++++|++++.|++|++||++++.
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~  177 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG  177 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence            345668999999999999999887542    235789999999999998432   1267899999999999999999998


Q ss_pred             EEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCc----ceEEEEecCcceeeeccccCCCC
Q 012799          232 CVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGH----WVNSLALSTEYALRTGAFDHTGK  305 (456)
Q Consensus       232 ~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~  305 (456)
                      ++..+..|..++.+++|+|++  +|++++.||+|++||+++++.......+..    .+......+....... ......
T Consensus       178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~  256 (393)
T 4gq1_A          178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS-SGIASS  256 (393)
T ss_dssp             EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-------CCSSS
T ss_pred             eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec-cccccc
Confidence            888888899999999999987  799999999999999998876554432221    1111111111000000 000000


Q ss_pred             ccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeE------------------EE
Q 012799          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH------------------VY  367 (456)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~------------------~~  367 (456)
                      .             .......+++..+++++.|+.+++||+..... ...+..|...+..                  ..
T Consensus       257 v-------------~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (393)
T 4gq1_A          257 L-------------ANVRWIGSDGSGILAMCKSGAWLRWNLFANND-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC  322 (393)
T ss_dssp             C-------------SEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCE
T ss_pred             c-------------eeeeeecCCCCEEEEEeCCCCEEEEECccCCC-CceEeeecCccccEEEccccccccccCcceeEE
Confidence            0             00001234578899999999999999865432 2222233332222                  23


Q ss_pred             ECC--CCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEE
Q 012799          368 FSP--DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL  445 (456)
Q Consensus       368 ~sp--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  445 (456)
                      ++|  ++.++++|+.||.|++||+.+++.+..+.+|..+|.++                           +|+|||++||
T Consensus       323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sv---------------------------afspdG~~LA  375 (393)
T 4gq1_A          323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDF---------------------------CWHQDGSHLA  375 (393)
T ss_dssp             ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEE---------------------------EECTTSSEEE
T ss_pred             EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEE---------------------------EEcCCCCEEE
Confidence            333  44467888899999999999999988888999999999                           9999999999


Q ss_pred             EeeCCCceE
Q 012799          446 SGSKDSTLK  454 (456)
Q Consensus       446 s~s~Dg~v~  454 (456)
                      +++.||.+.
T Consensus       376 ~as~~Gv~l  384 (393)
T 4gq1_A          376 IATEGSVLL  384 (393)
T ss_dssp             EEESSEEEE
T ss_pred             EEeCCCeEE
Confidence            999988743

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=4.5e-33  Score=252.84  Aligned_cols=243  Identities=17%  Similarity=0.163  Sum_probs=183.1

Q ss_pred             EEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEE
Q 012799          134 LWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF  213 (456)
Q Consensus       134 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l  213 (456)
                      +|++.+.+++.....|...|.+++|+|||++|++|+.++ +++|++++++...   ..+...+..+.+.+     +++.+
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~   73 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---SQEMRHLSKVRMLH-----RTNYV   73 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---EEECSCCCEEEECT-----TSSEE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---eeecCCeEEEEEcC-----CCCEE
Confidence            566777777777889999999999999999999998775 7899988765443   12222466777776     55666


Q ss_pred             -EEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecC
Q 012799          214 -VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALST  291 (456)
Q Consensus       214 -~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~  291 (456)
                       ++++.|+.|++||..+++++..+. +...|.+++++++..++ + .++.|++||+.++ +.+..+..   +...+++++
T Consensus        74 ~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~-~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~  147 (355)
T 3vu4_A           74 AFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVV-S-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN  147 (355)
T ss_dssp             EEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEE-E-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET
T ss_pred             EEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEE-E-EcCEEEEEECCCCceeeEEecc---CCceEEEEc
Confidence             567888999999999999998886 66799999999875333 3 4789999999987 66555543   233334443


Q ss_pred             cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE--EeCCCcEEEEecCCCC--------------CC-cc
Q 012799          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS--GSDDFTMFLWEPAVSK--------------QP-KT  354 (456)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~--------------~~-~~  354 (456)
                      .                                      ++++  |+.||.|++||+....              .+ ..
T Consensus       148 ~--------------------------------------~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~  189 (355)
T 3vu4_A          148 G--------------------------------------LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV  189 (355)
T ss_dssp             T--------------------------------------EEEEEESSCTTCEEEEECCC------------------CCE
T ss_pred             c--------------------------------------EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccE
Confidence            2                                      2444  6899999999987654              12 56


Q ss_pred             ccccccccEeEEEECCCCCEEEEEECCCc-EEEEeCCCCeEEEEEe-c-ccccEEEEEeeeeeeecCCCCceeeeccccc
Q 012799          355 RMTGHQQLVNHVYFSPDGQWVASASFDKS-IKLWNGTTGKFVAVFR-G-HVGPVYQIRFELIYCFRYPSNFYCVVDMSCC  431 (456)
Q Consensus       355 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~-~-~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~  431 (456)
                      .+.+|...|++++|+|+|++|++|+.||+ |++||+++++++..+. + |...|+++                       
T Consensus       190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~-----------------------  246 (355)
T 3vu4_A          190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDM-----------------------  246 (355)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEE-----------------------
T ss_pred             EEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEE-----------------------
Confidence            67899999999999999999999999998 9999999999999998 5 99999999                       


Q ss_pred             ccceeEecCCCeEEEeeCCCceEEC
Q 012799          432 MSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       432 ~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                          +|+|||++|++++.|++|+||
T Consensus       247 ----~~s~~~~~l~s~s~d~~v~iw  267 (355)
T 3vu4_A          247 ----KWSTDGSKLAVVSDKWTLHVF  267 (355)
T ss_dssp             ----EECTTSCEEEEEETTCEEEEE
T ss_pred             ----EECCCCCEEEEEECCCEEEEE
Confidence                999999999999999999999

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-32  Score=249.58  Aligned_cols=264  Identities=17%  Similarity=0.227  Sum_probs=192.1

Q ss_pred             ccccccCCcccEEEEEECC--CCCeEEEEECCCcEEEEeCCCC---------cceeEEecCCCCEEEEEEcCC--CCEEE
Q 012799          100 CSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQ---------TPMFKCTGHKNWVLCIAWSAD--GKHLV  166 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~--~~~~l~~~~~d~~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~  166 (456)
                      ....+.+|...|++++|+|  ++++|++|+.||.|++||+.++         +.+..+.+|...|.+++|+|+  +++|+
T Consensus        49 ~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  128 (351)
T 3f3f_A           49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA  128 (351)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             ecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE
Confidence            5667789999999999999  6999999999999999999886         457778899999999999999  99999


Q ss_pred             EEeCCCeEEEEeCCCCCCcccc------------ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE--
Q 012799          167 SGSKAGELQCWDPQTGKPSGNP------------LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC--  232 (456)
Q Consensus       167 s~~~dg~i~vwd~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--  232 (456)
                      +++.||.|++||+++++.....            ...|...+.++.|+|..+  ++..+++++.++.+.+|+...++.  
T Consensus       129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~  206 (351)
T 3f3f_A          129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRF--SPEKLAVSALEQAIIYQRGKDGKLHV  206 (351)
T ss_dssp             EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSS--SCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred             EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCC--CCcEEEEecCCCcEEEEccCCCceee
Confidence            9999999999999988754422            126788899999999322  378999999999998888877765  


Q ss_pred             EEEecCcCccEEEEEeCCCC-----eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCcc
Q 012799          233 VICLSGHTLAVTCVKWGGDG-----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY  307 (456)
Q Consensus       233 ~~~~~~~~~~v~~~~~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  307 (456)
                      +..+.+|...|++++|+|++     .|++++.||.|++||++++...................+.....           
T Consensus       207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  275 (351)
T 3f3f_A          207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMD-----------  275 (351)
T ss_dssp             EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred             eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccc-----------
Confidence            67788899999999999995     79999999999999998765444333222222222222211000           


Q ss_pred             CChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEE
Q 012799          308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (456)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw  387 (456)
                                           ......+.....+.+|+.. .......+.+|...|++++|+|++++|++|+.||.|++|
T Consensus       276 ---------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw  333 (351)
T 3f3f_A          276 ---------------------AQGRSDSNTEEKAELQSNL-QVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW  333 (351)
T ss_dssp             ------------------------------------CCSE-EEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred             ---------------------cccccccccceeeeecccc-cccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence                                 0011222333444555422 223455677899999999999999999999999999999


Q ss_pred             eCCCCeEEEEE
Q 012799          388 NGTTGKFVAVF  398 (456)
Q Consensus       388 d~~~~~~~~~~  398 (456)
                      |+.+++.+..+
T Consensus       334 ~~~~~~~~~~~  344 (351)
T 3f3f_A          334 KATYSNEFKCM  344 (351)
T ss_dssp             EECTTSCEEEE
T ss_pred             ecCcCcchhhe
Confidence            99987655444

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=5.3e-32  Score=234.34  Aligned_cols=284  Identities=17%  Similarity=0.134  Sum_probs=192.1

Q ss_pred             cEEEEEECCCCC---eEEEEECCCcEEEEeCCCC---cceeEEecCCCCEEEEEEcCCCCEEEEEeC-C---CeEEEEeC
Q 012799          110 AVLSVAFSPDGR---QLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSADGKHLVSGSK-A---GELQCWDP  179 (456)
Q Consensus       110 ~V~~~~~s~~~~---~l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d---g~i~vwd~  179 (456)
                      .+.++.|-.-|.   .+++++. ..|++|+..++   +.++++.+|+.+|..+.+.||..-|+.... +   +.|+..-+
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            455666655443   5677765 48999999998   788999999999999999886443322211 1   11211111


Q ss_pred             CCC----CCccccccCcccceEEEEecccccCCCCCEEEEEe--CCCcEEEEEC-CCCeEEEEecCcCccEEEEEeCC--
Q 012799          180 QTG----KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS--KDGDARIWDV-SLRKCVICLSGHTLAVTCVKWGG--  250 (456)
Q Consensus       180 ~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~--  250 (456)
                      ...    .... ...+|...|.++   +     +++.+.+++  .|+.|++|++ ..++.+..+..|...++.++|++  
T Consensus       120 spd~~~~~~~l-~s~g~~~~v~~l---~-----~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~  190 (356)
T 2w18_A          120 SSDDESEKQVL-LKSGNIKAVLGL---T-----KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ  190 (356)
T ss_dssp             ------CCEEE-EEEEEEEEEEEE---T-----TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred             CCCccccccEE-EeCCCeEEEEec---C-----CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence            111    0000 112333334333   2     455555533  5999999999 45888888888998898889888  


Q ss_pred             -CC-eEEEEeCCCcEEEEECCCCeEEEEeecCCc---ceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhcc
Q 012799          251 -DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGH---WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (456)
Q Consensus       251 -~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (456)
                       ++ .|++++.|++|++||+.+++.++++.+|..   .+.+++|+|++.+.........                     
T Consensus       191 g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~---------------------  249 (356)
T 2w18_A          191 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA---------------------  249 (356)
T ss_dssp             TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------------------------
T ss_pred             CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC---------------------
Confidence             55 899999999999999999999999986543   5777789998765433221110                     


Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCCCCCccc----cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecc
Q 012799          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTR----MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (456)
Q Consensus       326 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  401 (456)
                         ...+++|+.|++|++||..++......    ..+|...+.+..++  +.++++|+.||+|+|||+.+++++.++.+|
T Consensus       250 ---~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH  324 (356)
T 2w18_A          250 ---KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPV  324 (356)
T ss_dssp             -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred             ---cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCC
Confidence               113789999999999997765432211    13666555544443  789999999999999999999999999999


Q ss_pred             cccEE-EEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          402 VGPVY-QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       402 ~~~v~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ...+. .+                           +|+|||++|++|+.|++||||
T Consensus       325 ~~~vvs~v---------------------------afSPDG~~LaSGS~D~TIklW  353 (356)
T 2w18_A          325 SDQHWSFV---------------------------KWSGTDSHLLAGQKDGNIFVY  353 (356)
T ss_dssp             --CCCCEE---------------------------EECSSSSEEEEECTTSCEEEE
T ss_pred             CCCeEEEE---------------------------EECCCCCEEEEEECCCcEEEe
Confidence            87655 47                           899999999999999999999

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5e-32  Score=247.70  Aligned_cols=250  Identities=19%  Similarity=0.288  Sum_probs=207.3

Q ss_pred             EeCCCCcceeEEecCCCCEEEEEEcCC---CCEEEEEeCCCeEEEEeCCC-CCCccccccCcccceEEEEecccccCCCC
Q 012799          135 WDLNTQTPMFKCTGHKNWVLCIAWSAD---GKHLVSGSKAGELQCWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPC  210 (456)
Q Consensus       135 wd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  210 (456)
                      |+....+.+..+.+|...|++++|+|+   |++|++|+.||.|++||+.+ +......+.+|...|.+++|+|     ++
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~   98 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-----DG   98 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-----TS
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-----CC
Confidence            455566777788899999999999998   69999999999999999998 5554356788999999999999     89


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEe--CCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEE
Q 012799          211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSL  287 (456)
Q Consensus       211 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  287 (456)
                      ++|++++.||.|++||+++++.+. +..|...|.+++|  ++++ .+++++.||.|++||+++++.+..+..+. .+.++
T Consensus        99 ~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~  176 (368)
T 3mmy_A           99 SKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCA  176 (368)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEE
T ss_pred             CEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEE
Confidence            999999999999999999998776 4569999999999  8888 89999999999999999999888887654 45555


Q ss_pred             EecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc-ccccccEeEE
Q 012799          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHV  366 (456)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~  366 (456)
                      .+.+.                                      .+++++.++.+.+|+++......... ..+...+.++
T Consensus       177 ~~~~~--------------------------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (368)
T 3mmy_A          177 DVIYP--------------------------------------MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCV  218 (368)
T ss_dssp             EEETT--------------------------------------EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEE
T ss_pred             EecCC--------------------------------------eeEEEeCCCcEEEEEeccccchhhhccccccCCCceE
Confidence            55433                                      48889999999999987654333222 2233445566


Q ss_pred             EECCCCCE----EEEEECCCcEEEEeCCCC---eEEEEEecccc------------cEEEEEeeeeeeecCCCCceeeec
Q 012799          367 YFSPDGQW----VASASFDKSIKLWNGTTG---KFVAVFRGHVG------------PVYQIRFELIYCFRYPSNFYCVVD  427 (456)
Q Consensus       367 ~~sp~~~~----l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~------------~v~~i~~~~~~~~~~~~~~~~~~~  427 (456)
                      ++.++...    +++++.||.|++||+...   +.+..+.+|..            +|.++                   
T Consensus       219 ~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------------------  279 (368)
T 3mmy_A          219 AIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI-------------------  279 (368)
T ss_dssp             EEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE-------------------
T ss_pred             EEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEE-------------------
Confidence            66554443    999999999999999987   66778888877            68888                   


Q ss_pred             ccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          428 MSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       428 ~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                              +|+|++++|++|+.||.|+||
T Consensus       280 --------~~sp~~~~l~s~~~dg~i~iw  300 (368)
T 3mmy_A          280 --------AFHPVHGTLATVGSDGRFSFW  300 (368)
T ss_dssp             --------EECTTTCCEEEEETTSCEEEE
T ss_pred             --------EEecCCCEEEEEccCCeEEEE
Confidence                    999999999999999999998

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=8.1e-31  Score=241.91  Aligned_cols=260  Identities=12%  Similarity=0.141  Sum_probs=214.4

Q ss_pred             CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI  199 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  199 (456)
                      .++++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.... +.. ...+.++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~-~~~-~~~v~~~   79 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-VPA-GSSPQGV   79 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-EEC-SSSEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE-EEC-CCCccce
Confidence            467888899999999999999888888665 58999999999977 5677899999999998887653 332 3389999


Q ss_pred             EecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE-EEEeCCCcEEEEECCCCeEEEE
Q 012799          200 SWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI-YTGSQDCTIKVWETTQGKLIRE  276 (456)
Q Consensus       200 ~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~i~iwd~~~~~~~~~  276 (456)
                      +|+|     ++++++++ +.++.|++||+.+++.+..+..+ ..+.+++|+|++ .+ ++++.++.|++||+.+++.+..
T Consensus        80 ~~sp-----dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A           80 AVSP-----DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (391)
T ss_dssp             EECT-----TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EECC-----CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            9999     88877655 46799999999999988887654 568999999998 55 6778899999999999999888


Q ss_pred             eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE-EEEeCCCcEEEEecCCCCCCccc
Q 012799          277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTR  355 (456)
Q Consensus       277 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~  355 (456)
                      +..+ ..+..++++|+                                    ++.+ ++++.++.|++||++... ....
T Consensus       154 ~~~~-~~~~~~~~~~d------------------------------------g~~l~~~~~~~~~v~~~d~~~~~-~~~~  195 (391)
T 1l0q_A          154 VSVG-RSPKGIAVTPD------------------------------------GTKVYVANFDSMSISVIDTVTNS-VIDT  195 (391)
T ss_dssp             EECC-SSEEEEEECTT------------------------------------SSEEEEEETTTTEEEEEETTTTE-EEEE
T ss_pred             EecC-CCcceEEECCC------------------------------------CCEEEEEeCCCCEEEEEECCCCe-EEEE
Confidence            8755 45689999988                                    4445 677889999999987653 2222


Q ss_pred             cccccccEeEEEECCCCCEEEEEE---CCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccc
Q 012799          356 MTGHQQLVNHVYFSPDGQWVASAS---FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM  432 (456)
Q Consensus       356 ~~~~~~~v~~~~~sp~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~  432 (456)
                       ..+...+.+++|+|++++|++++   .++.|++||+.+++.+..+..|.. +.++                        
T Consensus       196 -~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~------------------------  249 (391)
T 1l0q_A          196 -VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGI------------------------  249 (391)
T ss_dssp             -EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEE------------------------
T ss_pred             -EecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEE------------------------
Confidence             23556789999999999998887   689999999999999988887654 5777                        


Q ss_pred             cceeEecCCCeE-EEeeCCCceEEC
Q 012799          433 SLYSWSADSRLL-LSGSKDSTLKVT  456 (456)
Q Consensus       433 ~~~~~s~dg~~l-~s~s~Dg~v~iW  456 (456)
                         +|+|+|++| ++++.|+.|++|
T Consensus       250 ---~~s~dg~~l~~s~~~d~~v~v~  271 (391)
T 1l0q_A          250 ---AVTPDGKKVYVALSFXNTVSVI  271 (391)
T ss_dssp             ---EECTTSSEEEEEETTTTEEEEE
T ss_pred             ---EEccCCCEEEEEcCCCCEEEEE
Confidence               899999977 677889999998

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.8e-32  Score=252.48  Aligned_cols=264  Identities=16%  Similarity=0.069  Sum_probs=180.4

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce-----eEEecCCCCEEEEEEcC--------CCCEEEEE
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-----FKCTGHKNWVLCIAWSA--------DGKHLVSG  168 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~s~  168 (456)
                      .....|...+....+++++.+||+|+.|++|+|||..+++..     ..+.+|.+.|.+++|+|        |+++||+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~  162 (393)
T 4gq1_A           83 YSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV  162 (393)
T ss_dssp             EECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred             ccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE
Confidence            344567777777777888899999999999999999887543     33568999999999998        78999999


Q ss_pred             eCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCC-CEEEEEeCCCcEEEEECCCCeEEEE------------
Q 012799          169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVIC------------  235 (456)
Q Consensus       169 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~------------  235 (456)
                      +.|++|+|||+.++.... ....|...+.+++|+|     ++ .+|++++.||.|++||+++++....            
T Consensus       163 s~D~tv~~Wd~~~~~~~~-~~~~~~~~v~~v~~~p-----~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~  236 (393)
T 4gq1_A          163 GDDCTLIIWRLTDEGPIL-AGYPLSSPGISVQFRP-----SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL  236 (393)
T ss_dssp             ETTSEEEEEEEETTEEEE-EEEECSSCEEEEEEET-----TEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred             ECCCeEEEEECCCCceee-eecCCCCCcEEEEECC-----CCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence            999999999998876654 4667888999999999     55 4799999999999999987754332            


Q ss_pred             -------------ecCcCccEEEEEeC-CCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccc
Q 012799          236 -------------LSGHTLAVTCVKWG-GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (456)
Q Consensus       236 -------------~~~~~~~v~~~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  300 (456)
                                   ..+|...+.++.|. +++ .+++++.|+++++||+..++....+..+...+..+.+.++........
T Consensus       237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  316 (393)
T 4gq1_A          237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP  316 (393)
T ss_dssp             EEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC
T ss_pred             EecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC
Confidence                         23566778889886 677 899999999999999999988888888888888888887654322111


Q ss_pred             cCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEEC
Q 012799          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF  380 (456)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~  380 (456)
                      ......+                ....++.++++|+.||.|++||+..+.. .....+|..+|++++|+|||++||+++.
T Consensus       317 ~~~~~~~----------------~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-~~~~~~~~~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          317 SLLGACP----------------HPRYMDYFATAHSQHGLIQLINTYEKDS-NSIPIQLGMPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             CSSCCEE----------------CSSCTTEEEEEETTTTEEEEEETTCTTC-CEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred             cceeEEE----------------ccCCCCEEEEEECCCCEEEEEECCCCcE-EEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            1100000                0112344677888999999999876654 4445678889999999999999999997


Q ss_pred             CCcEEEEeC
Q 012799          381 DKSIKLWNG  389 (456)
Q Consensus       381 dg~i~iwd~  389 (456)
                      +| +.+|.+
T Consensus       380 ~G-v~lvrL  387 (393)
T 4gq1_A          380 GS-VLLTRL  387 (393)
T ss_dssp             SE-EEEEEE
T ss_pred             CC-eEEEEE
Confidence            76 666654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-31  Score=248.99  Aligned_cols=245  Identities=15%  Similarity=0.128  Sum_probs=201.7

Q ss_pred             cccCCcccEEEEEECCCCCeE-EEEECCCcEEEEeCC--CCcceeEEe--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799          103 TIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLN--TQTPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~~~~~l-~~~~~d~~v~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  177 (456)
                      ...+|.+.|++++|+|++++| ++|+.||.|++||+.  +++.+..+.  .|...|.+++|+|++++|++|+.+|.|++|
T Consensus        97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI  176 (450)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence            456899999999999999996 889899999999999  888887776  577899999999999999999999999999


Q ss_pred             eCCCCCCcc---ccccCcccceEEEEecccccCCC---CCEEEEEeCCCcEEEEECCCCeEEEE-ecCcCccEEEEEeCC
Q 012799          178 DPQTGKPSG---NPLSGHKKWITGISWEPVHLNAP---CRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGG  250 (456)
Q Consensus       178 d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~  250 (456)
                      ++.+++...   ..+.+|...|.+++|+|     +   +.+|++++.|+.|++||+++++.+.. +.+|...|.+++|+ 
T Consensus       177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-----~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-  250 (450)
T 2vdu_B          177 DINSIPEEKFTQEPILGHVSMLTDVHLIK-----DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-  250 (450)
T ss_dssp             ETTSCCCSSCCCCCSEECSSCEEEEEEEE-----CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-
T ss_pred             ecCCcccccccceeeecccCceEEEEEcC-----CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-
Confidence            998876532   24678999999999999     7   88999999999999999999988877 56899999999999 


Q ss_pred             CC-eEEEEeCCCcEEEEECCCCeEEEEeecC-------------------------CcceEEEEecCcceeeeccccCCC
Q 012799          251 DG-VIYTGSQDCTIKVWETTQGKLIRELKGH-------------------------GHWVNSLALSTEYALRTGAFDHTG  304 (456)
Q Consensus       251 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~i~~~~~~~~~~~~~~~~~~~~  304 (456)
                      ++ .|++++.|+.|++||+++++.+..+..+                         ...+..++++|+            
T Consensus       251 d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~------------  318 (450)
T 2vdu_B          251 KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN------------  318 (450)
T ss_dssp             STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS------------
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC------------
Confidence            88 9999999999999999999988887632                         235667777776            


Q ss_pred             CccCChHHHHHHHHhhhhhccCCCCCEEEEEe-CCCcEEEEec--CCCC--CCccccccccccEeEEEECCCCCEEEEEE
Q 012799          305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEP--AVSK--QPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (456)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~s~~  379 (456)
                                              +.++++++ .++.|++|++  ....  .....+..| ..|.+++|+|++.++++++
T Consensus       319 ------------------------~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~  373 (450)
T 2vdu_B          319 ------------------------LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDN  373 (450)
T ss_dssp             ------------------------SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred             ------------------------CCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence                                    56688888 8999999998  3322  334445566 7899999999654444444


Q ss_pred             C------CCcEEEEeCC
Q 012799          380 F------DKSIKLWNGT  390 (456)
Q Consensus       380 ~------dg~i~iwd~~  390 (456)
                      .      +..|.+|.+.
T Consensus       374 ~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          374 KESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             TTCCSSCCCSEEEEEEE
T ss_pred             ccCCCCCCcceEEEEEE
Confidence            3      4557888654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.6e-29  Score=231.83  Aligned_cols=258  Identities=17%  Similarity=0.225  Sum_probs=209.8

Q ss_pred             cccccccCCcccEEEEEECCCCCeE-EEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEE
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQC  176 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l-~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~v  176 (456)
                      ++.+.+.+|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|++++ .++.|++
T Consensus        23 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v  100 (391)
T 1l0q_A           23 KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSV  100 (391)
T ss_dssp             EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEE
Confidence            4455666665 48999999999977 566689999999999999888887555 899999999999886554 6799999


Q ss_pred             EeCCCCCCccccccCcccceEEEEecccccCCCCCEE-EEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (456)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l  254 (456)
                      ||+.+++... .+. +...+.+++|+|     +++.+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|++ .+
T Consensus       101 ~d~~~~~~~~-~~~-~~~~~~~~~~s~-----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l  172 (391)
T 1l0q_A          101 IDTTSNTVAG-TVK-TGKSPLGLALSP-----DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKV  172 (391)
T ss_dssp             EETTTTEEEE-EEE-CSSSEEEEEECT-----TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEE
T ss_pred             EECCCCeEEE-EEe-CCCCcceEEECC-----CCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEE
Confidence            9999887654 222 445689999999     88877 67888999999999999988888765 456999999999 55


Q ss_pred             -EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE
Q 012799          255 -YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (456)
Q Consensus       255 -~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (456)
                       ++++.++.|++||+++++....+. +...+.+++++|+                                    +.+++
T Consensus       173 ~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~------------------------------------g~~l~  215 (391)
T 1l0q_A          173 YVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPE------------------------------------GTKAY  215 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTT------------------------------------SSEEE
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCC------------------------------------CCEEE
Confidence             567788999999999998887776 4567889999988                                    55577


Q ss_pred             EEe---CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEE-EEEECCCcEEEEeCCCCeEEEEEecccccE
Q 012799          334 SGS---DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGKFVAVFRGHVGPV  405 (456)
Q Consensus       334 ~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  405 (456)
                      +++   .++.|++||+.... ....+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+.
T Consensus       216 ~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~  289 (391)
T 1l0q_A          216 VTNVDKYFNTVSMIDTGTNK-ITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPY  289 (391)
T ss_dssp             EEEECSSCCEEEEEETTTTE-EEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE
T ss_pred             EEecCcCCCcEEEEECCCCe-EEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCC
Confidence            776   68999999987654 334444443 47899999999987 677889999999999999999998877654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-32  Score=243.88  Aligned_cols=224  Identities=10%  Similarity=0.023  Sum_probs=180.6

Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC---------
Q 012799          158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS---------  228 (456)
Q Consensus       158 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---------  228 (456)
                      +.++++++++|+.||.|++||+.+++......   ...|.++.|+|     +   +++++.|+.|++|+..         
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~-----~---~~s~s~D~~i~~w~~~~~~~~~~~~  112 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHP-----A---IISRGPCNRLLLLYPGNQITILDSK  112 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCC-----S---EEEECSTTEEEEEETTTEEEEEETT
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCC-----c---eEEecCCCeEEEEEccCceEEeecC
Confidence            34578899999999999999999988765322   45677777777     3   9999999999999765         


Q ss_pred             CCeEEEEec-CcCccEEEEEeCC--CC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCcceEEEEecCcceeeeccccCC
Q 012799          229 LRKCVICLS-GHTLAVTCVKWGG--DG-VIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHT  303 (456)
Q Consensus       229 ~~~~~~~~~-~~~~~v~~~~~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~  303 (456)
                      +++.+.... +|...|.+++|+|  ++ .+++++.||.|++||+++++...... .+...+.+++|+|+           
T Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd-----------  181 (343)
T 3lrv_A          113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD-----------  181 (343)
T ss_dssp             TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTT-----------
T ss_pred             CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCC-----------
Confidence            444444443 6778899999999  88 89999999999999999999877664 35557999999998           


Q ss_pred             CCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc-ccccEeEEEECCCCCEEEEEECCC
Q 012799          304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDK  382 (456)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~dg  382 (456)
                                               +.++++|+.||.|++||++........+.. |..+|++++|+|+|.+|++++ |+
T Consensus       182 -------------------------g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~  235 (343)
T 3lrv_A          182 -------------------------SLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ  235 (343)
T ss_dssp             -------------------------SCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS
T ss_pred             -------------------------CCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC
Confidence                                     566999999999999999887765355666 999999999999999999999 55


Q ss_pred             cEEEEeCCCCeEEEEEec---ccccEE--EEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC-CCceEEC
Q 012799          383 SIKLWNGTTGKFVAVFRG---HVGPVY--QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVT  456 (456)
Q Consensus       383 ~i~iwd~~~~~~~~~~~~---~~~~v~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~-Dg~v~iW  456 (456)
                      .|++||+++++.+..+..   |...+.  ++                           +|+|+|++|++++. |+.|+||
T Consensus       236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~g~~l~~~s~~d~~i~v~  288 (343)
T 3lrv_A          236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTY---------------------------DIDDSGKNMIAYSNESNSLTIY  288 (343)
T ss_dssp             BEEEEETTSSTTCBSSCCCBC-----CCEEE---------------------------EECTTSSEEEEEETTTTEEEEE
T ss_pred             eEEEEEcCCCCcceeecccccccccccceEE---------------------------EECCCCCEEEEecCCCCcEEEE
Confidence            999999999876554443   333333  34                           89999999999998 9999998

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=2.8e-28  Score=228.07  Aligned_cols=276  Identities=11%  Similarity=0.044  Sum_probs=216.8

Q ss_pred             cccEEEEE---ECCCCCeEEEEE--------------CCC--cEEEEeCCCC--cceeEEecCCCCEEEEEEcCCCCEEE
Q 012799          108 TEAVLSVA---FSPDGRQLASGS--------------GDT--TVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSADGKHLV  166 (456)
Q Consensus       108 ~~~V~~~~---~s~~~~~l~~~~--------------~d~--~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~  166 (456)
                      ...+..++   |+|+++.++..+              .++  .|..||..++  +.+..+..+ ..+.+++|+|++.+++
T Consensus        60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~  138 (433)
T 3bws_A           60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAI  138 (433)
T ss_dssp             TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEE
T ss_pred             CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEE
Confidence            44566777   777766555432              233  4444444334  445555544 4566999999777888


Q ss_pred             EEeCCCeEEEEeCCCCCCccc----cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc
Q 012799          167 SGSKAGELQCWDPQTGKPSGN----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA  242 (456)
Q Consensus       167 s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  242 (456)
                      +++.++.|++||+.+++....    ...+|...|.+++|++     ++..+++++.|+.|++||+++++.+..+..|...
T Consensus       139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~  213 (433)
T 3bws_A          139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-----HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW  213 (433)
T ss_dssp             EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-----GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS
T ss_pred             EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-----CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC
Confidence            888899999999998876532    2347888999999988     8899999999999999999999999999889999


Q ss_pred             EEEEEeCCCC-eE-EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799          243 VTCVKWGGDG-VI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (456)
Q Consensus       243 v~~~~~~~~~-~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (456)
                      +.+++|+|++ .+ ++++.++.|++||+++++.+..+..+ ..+.+++++|+                            
T Consensus       214 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~----------------------------  264 (433)
T 3bws_A          214 SKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKD----------------------------  264 (433)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTT----------------------------
T ss_pred             eeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCC----------------------------
Confidence            9999999998 55 45557999999999999988888754 45899999988                            


Q ss_pred             hhhccCCCCCEEEEEe--------CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCE-EEEEECCCcEEEEeCCC
Q 012799          321 YNKIKGNAPERLVSGS--------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW-VASASFDKSIKLWNGTT  391 (456)
Q Consensus       321 ~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~  391 (456)
                              +.++++++        .|+.|++||+..... .. ...|...+.+++|+|+++. +++++.|+.|++||+.+
T Consensus       265 --------g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~-~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~  334 (433)
T 3bws_A          265 --------GKELYIAQFSASNQESGGGRLGIYSMDKEKL-ID-TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE  334 (433)
T ss_dssp             --------SSEEEEEEEESCTTCSCCEEEEEEETTTTEE-EE-EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred             --------CCEEEEEECCCCccccCCCeEEEEECCCCcE-Ee-eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence                    45577776        588999999876532 22 3356668999999999975 56678999999999999


Q ss_pred             CeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC---------------CCceEEC
Q 012799          392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK---------------DSTLKVT  456 (456)
Q Consensus       392 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~---------------Dg~v~iW  456 (456)
                      ++.+..+. +...+.++                           +|+|+|++|++++.               ||.|++|
T Consensus       335 ~~~~~~~~-~~~~~~~~---------------------------~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~  386 (433)
T 3bws_A          335 KKVQKSIP-VFDKPNTI---------------------------ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVI  386 (433)
T ss_dssp             TEEEEEEE-CSSSEEEE---------------------------EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred             CcEEEEec-CCCCCCeE---------------------------EEcCCCCEEEEEecCCCccccccccccccceEEEEE
Confidence            99888876 66778888                           89999999888876               5799987

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=8.1e-29  Score=214.50  Aligned_cols=246  Identities=11%  Similarity=0.065  Sum_probs=163.5

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEE-CC---CcEEEEeCCCC----cceeEEecCCCCEEEEEEcCCCCEEEEEe-
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGS-GD---TTVRLWDLNTQ----TPMFKCTGHKNWVLCIAWSADGKHLVSGS-  169 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~-~d---~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-  169 (456)
                      ++.+++++|..+|..+.+.||-.-|++.. .+   +.|+..-+...    .......+|...|..+   ++++++.+++ 
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~  153 (356)
T 2w18_A           77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGT  153 (356)
T ss_dssp             EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESS
T ss_pred             eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEeccc
Confidence            45677778888777777777543322221 11   11111111111    1111112344334433   4565555543 


Q ss_pred             -CCCeEEEEeCCC-CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC---ccEE
Q 012799          170 -KAGELQCWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT---LAVT  244 (456)
Q Consensus       170 -~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~  244 (456)
                       .|+.|++|++.. |+... .+..|...+..++|++..  .++..|++++.|++|++||+.+++++.++.+|.   ..+.
T Consensus       154 g~d~~V~~~~~s~dG~~~~-s~~~~~~~v~~l~fs~~~--g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~  230 (356)
T 2w18_A          154 LSDQQVEVMTFAEDGGGKE-NQFLMPPEETILTFAEVQ--GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVC  230 (356)
T ss_dssp             STTCEEEEEEECTTSCEEE-EEEECCCSSCEEEEEEEE--TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCE
T ss_pred             CCCCcEEEEEECCCCceee-eeccCCCceeeEEeeccC--CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeE
Confidence             588888888844 44333 466788888888888732  267899999999999999999999999997654   4677


Q ss_pred             EEEeCCCC-eE------------EEEeCCCcEEEEECCCCeEEEEee-----cCCcceEEEEecCcceeeeccccCCCCc
Q 012799          245 CVKWGGDG-VI------------YTGSQDCTIKVWETTQGKLIRELK-----GHGHWVNSLALSTEYALRTGAFDHTGKQ  306 (456)
Q Consensus       245 ~~~~~~~~-~l------------~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~  306 (456)
                      +++|+|+| .+            ++|+.|++|++||..+++.+..+.     +|...+.+..++                
T Consensus       231 ~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s----------------  294 (356)
T 2w18_A          231 HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK----------------  294 (356)
T ss_dssp             EEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE----------------
T ss_pred             EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC----------------
Confidence            88999999 44            567889999999999998876542     333322222211                


Q ss_pred             cCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEe-EEEECCCCCEEEEEECCCcEE
Q 012799          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN-HVYFSPDGQWVASASFDKSIK  385 (456)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~s~~~dg~i~  385 (456)
                                            +..+++++.|++|++||+.+++ ....+.+|...+. +++|+|||++|++|+.|++|+
T Consensus       295 ----------------------g~~lASgS~DgTIkIWDl~tGk-~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIk  351 (356)
T 2w18_A          295 ----------------------DHCAAAILTSGTIAIWDLLLGQ-CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIF  351 (356)
T ss_dssp             ----------------------TTEEEEEETTSCEEEEETTTCS-EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEE
T ss_pred             ----------------------CCEEEEEcCCCcEEEEECCCCc-EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEE
Confidence                                  3458999999999999987654 5566778877654 689999999999999999999


Q ss_pred             EEeC
Q 012799          386 LWNG  389 (456)
Q Consensus       386 iwd~  389 (456)
                      |||+
T Consensus       352 lWd~  355 (356)
T 2w18_A          352 VYHY  355 (356)
T ss_dssp             EEEE
T ss_pred             EecC
Confidence            9985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=8.4e-28  Score=222.50  Aligned_cols=268  Identities=14%  Similarity=0.128  Sum_probs=212.1

Q ss_pred             eEEEeec--c--ccc--ccccCCcccEEEEEECC--------------CCCeEEEEECC------CcEEEEeCCCCccee
Q 012799           91 VFRIRPV--N--RCS--ATIAGHTEAVLSVAFSP--------------DGRQLASGSGD------TTVRLWDLNTQTPMF  144 (456)
Q Consensus        91 ~~~~~~~--~--~~~--~~l~~h~~~V~~~~~s~--------------~~~~l~~~~~d------~~v~vwd~~~~~~~~  144 (456)
                      .+++|..  .  ++.  .++.+|...+..+++++              .+..++.++.+      +.|++||++. ....
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~  172 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQF  172 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCE
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCE
Confidence            5667765  2  333  45889999888888775              15566666554      7999999974 5567


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEE-EEeCCC
Q 012799          145 KCTGHKNWVLCIAWSADGKHLVSGSKAG---ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV-SASKDG  220 (456)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~-~~~~dg  220 (456)
                      .+.+|...+.+++|+|+|++|++++.++   .|++||+.+++..  .+..|...+.+++|+|     +|+.|+ +++.++
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~--~l~~~~~~~~~~~~sp-----dg~~la~~~~~~g  245 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--QVASFPRHNGAPAFSP-----DGSKLAFALSKTG  245 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--EEECCSSCEEEEEECT-----TSSEEEEEECTTS
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE--EeecCCCcccCEEEcC-----CCCEEEEEEecCC
Confidence            7788999999999999999999999885   9999999988764  3566788899999999     999888 566655


Q ss_pred             c--EEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC-CC--cEEEEECCCCeEEEEeecCCcceEEEEecCcce
Q 012799          221 D--ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ-DC--TIKVWETTQGKLIRELKGHGHWVNSLALSTEYA  294 (456)
Q Consensus       221 ~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  294 (456)
                      .  |++||+.+++. ..+..|...+.+++|+|+| .|++++. ++  .|++||+.+++. ..+..+...+.+++|+|+  
T Consensus       246 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd--  321 (415)
T 2hqs_A          246 SLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSD--  321 (415)
T ss_dssp             SCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTT--
T ss_pred             CceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCC--
Confidence            4  99999988875 5677788899999999999 6777665 44  688889988764 345556678889999998  


Q ss_pred             eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC---CcEEEEecCCCCCCccccccccccEeEEEECCC
Q 012799          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD---FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD  371 (456)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~  371 (456)
                                                        +++|++++.+   ..|++||+..+..  ..+..+. .+.+++|+|+
T Consensus       322 ----------------------------------G~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spd  364 (415)
T 2hqs_A          322 ----------------------------------GKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPN  364 (415)
T ss_dssp             ----------------------------------SSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTT
T ss_pred             ----------------------------------CCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCC
Confidence                                              5557777654   5899999876543  3344444 7899999999


Q ss_pred             CCEEEEEECCC---cEEEEeCCCCeEEEEEecccccEEEE
Q 012799          372 GQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       372 ~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      |++|++++.++   .|++||+. +.....+..|.+.|.++
T Consensus       365 g~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~  403 (415)
T 2hqs_A          365 GTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFP  403 (415)
T ss_dssp             SSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEE
T ss_pred             CCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCC
Confidence            99999988777   79999986 66677888999999999

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=2.8e-28  Score=225.74  Aligned_cols=274  Identities=15%  Similarity=0.137  Sum_probs=214.1

Q ss_pred             CcccEEEEEECCCCC-eEEEEE----CCC----cEEEEeC--CCCcce--eEEecCCCCEEEEEEcC-------------
Q 012799          107 HTEAVLSVAFSPDGR-QLASGS----GDT----TVRLWDL--NTQTPM--FKCTGHKNWVLCIAWSA-------------  160 (456)
Q Consensus       107 h~~~V~~~~~s~~~~-~l~~~~----~d~----~v~vwd~--~~~~~~--~~~~~~~~~v~~~~~~~-------------  160 (456)
                      +...|...+|.+.|. ++++|+    .||    .+++||+  .+++.+  ..+.+|...+..+++++             
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            345677788888775 566776    467    8999999  888877  45788888888877764             


Q ss_pred             -CCCEEEEEeCC------CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC---cEEEEECCCC
Q 012799          161 -DGKHLVSGSKA------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG---DARIWDVSLR  230 (456)
Q Consensus       161 -~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~  230 (456)
                       .+..++.++.+      +.|++||+..+..  ..+..|...+.+++|+|     +|+.+++++.++   .|++||+.++
T Consensus       141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--~~l~~~~~~v~~~~~Sp-----dg~~la~~s~~~~~~~i~~~d~~tg  213 (415)
T 2hqs_A          141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ--FVVHRSPQPLMSPAWSP-----DGSKLAYVTFESGRSALVIQTLANG  213 (415)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEEEEETTSCSC--EEEEEESSCEEEEEECT-----TSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             cCCCEEEEEEecCCCCccceEEEEcCCCCCC--EEEeCCCCcceeeEEcC-----CCCEEEEEEecCCCcEEEEEECCCC
Confidence             25667666654      7999999975443  25677889999999999     999999999875   9999999988


Q ss_pred             eEEEEecCcCccEEEEEeCCCC-eEE-EEeCCCc--EEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCc
Q 012799          231 KCVICLSGHTLAVTCVKWGGDG-VIY-TGSQDCT--IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ  306 (456)
Q Consensus       231 ~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  306 (456)
                      +.. .+..+...+.+++|+|+| .|+ +++.++.  |++||+.+++. ..+..+...+.+++|+|+              
T Consensus       214 ~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd--------------  277 (415)
T 2hqs_A          214 AVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPD--------------  277 (415)
T ss_dssp             CEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTT--------------
T ss_pred             cEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCC--------------
Confidence            775 466678899999999999 565 6666654  99999998876 566667888999999998              


Q ss_pred             cCChHHHHHHHHhhhhhccCCCCCEEEEEeC-CC--cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC--
Q 012799          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSD-DF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD--  381 (456)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d--  381 (456)
                                            +++|++++. ++  .|++||+..+.  ...+..+...+.+++|+|+|++|++++.+  
T Consensus       278 ----------------------g~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g  333 (415)
T 2hqs_A          278 ----------------------SQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGG  333 (415)
T ss_dssp             ----------------------SSEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             ----------------------CCEEEEEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCCEEEEEECcCC
Confidence                                  555777765 45  67777876554  23345566789999999999999988764  


Q ss_pred             -CcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC---ceEEC
Q 012799          382 -KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS---TLKVT  456 (456)
Q Consensus       382 -g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg---~v~iW  456 (456)
                       +.|++||+.+++.. .+..+. .+.++                           +|+|||++|++++.|+   .|++|
T Consensus       334 ~~~i~~~d~~~~~~~-~l~~~~-~~~~~---------------------------~~spdg~~l~~~s~~~~~~~l~~~  383 (415)
T 2hqs_A          334 QQHIAKQDLATGGVQ-VLSSTF-LDETP---------------------------SLAPNGTMVIYSSSQGMGSVLNLV  383 (415)
T ss_dssp             CEEEEEEETTTCCEE-ECCCSS-SCEEE---------------------------EECTTSSEEEEEEEETTEEEEEEE
T ss_pred             ceEEEEEECCCCCEE-EecCCC-CcCCe---------------------------EEcCCCCEEEEEEcCCCccEEEEE
Confidence             58999999988764 455554 77777                           8999999999998877   67765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=3.2e-26  Score=218.26  Aligned_cols=295  Identities=13%  Similarity=0.109  Sum_probs=222.5

Q ss_pred             eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeC--CCCcceeEEecCCCCEEEEEEcC----CC
Q 012799           91 VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL--NTQTPMFKCTGHKNWVLCIAWSA----DG  162 (456)
Q Consensus        91 ~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~--~~~~~~~~~~~~~~~v~~~~~~~----~~  162 (456)
                      .+.++..  +++..++..+.. +.+++|+|||++|++++.|++|++||+  .+++.+.++. +...+..++|+|    +|
T Consensus       160 ~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg  237 (543)
T 1nir_A          160 QIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYED  237 (543)
T ss_dssp             EEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTT
T ss_pred             eEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCC
Confidence            3444433  456677773333 899999999999999999999999999  7888888887 456789999999    99


Q ss_pred             CEEEEEeC-CCeEEEEeCCCCCCcccccc-C--------cc-cceEEEEecccccCCCCC-EEEEEeCCCcEEEEECCCC
Q 012799          163 KHLVSGSK-AGELQCWDPQTGKPSGNPLS-G--------HK-KWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLR  230 (456)
Q Consensus       163 ~~l~s~~~-dg~i~vwd~~~~~~~~~~~~-~--------~~-~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~  230 (456)
                      +++++++. +++|.+||..+++.+..... +        |. ..+.++.++|     ++. .+++...++.|.+||..+.
T Consensus       238 ~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~-----~~~~~~vs~~~~g~i~vvd~~~~  312 (543)
T 1nir_A          238 RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-----EHPEFIVNVKETGKVLLVNYKDI  312 (543)
T ss_dssp             TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS-----SSSEEEEEETTTTEEEEEECTTS
T ss_pred             CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC-----CCCEEEEEECCCCeEEEEEecCC
Confidence            99999885 89999999998876653221 1        22 3688899988     544 5566677899999999876


Q ss_pred             eEEE--EecCcCccEEEEEeCCCC-eEEEE-eCCCcEEEEECCCCeEEEEeec----CCcceEEEEecCcceeeeccccC
Q 012799          231 KCVI--CLSGHTLAVTCVKWGGDG-VIYTG-SQDCTIKVWETTQGKLIRELKG----HGHWVNSLALSTEYALRTGAFDH  302 (456)
Q Consensus       231 ~~~~--~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~  302 (456)
                      +.+.  .+ .+...+.++.|+|++ +++++ ..+++|.+||..+++++..+..    |......+ ++|++         
T Consensus       313 ~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~---------  381 (543)
T 1nir_A          313 DNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKY---------  381 (543)
T ss_dssp             SSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTT---------
T ss_pred             CcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCC---------
Confidence            5433  33 245667889999999 56555 4589999999999999888764    33222222 34441         


Q ss_pred             CCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe-CCCcEEEEecCCC------CCCccccccccccEeEEEECCCCCEE
Q 012799          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVS------KQPKTRMTGHQQLVNHVYFSPDGQWV  375 (456)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~sp~~~~l  375 (456)
                                                +..++++. .|++|.+||+...      .+.+..+..|...+..++++|+|++|
T Consensus       382 --------------------------g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l  435 (543)
T 1nir_A          382 --------------------------GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL  435 (543)
T ss_dssp             --------------------------EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEE
T ss_pred             --------------------------ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcE
Confidence                                      33466665 6899999998762      34566677888888899999999999


Q ss_pred             EEEE-------CCCcEEEEeCCCCeEE-EEE--------ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEec
Q 012799          376 ASAS-------FDKSIKLWNGTTGKFV-AVF--------RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA  439 (456)
Q Consensus       376 ~s~~-------~dg~i~iwd~~~~~~~-~~~--------~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  439 (456)
                      ++++       .+++|.+||+.+++.. ..+        ..+...+..+                           .|+|
T Consensus       436 ~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------------------------~~~~  488 (543)
T 1nir_A          436 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP---------------------------EYNK  488 (543)
T ss_dssp             EECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEE---------------------------EECS
T ss_pred             EEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEec---------------------------cCCC
Confidence            9987       2779999999998876 443        3456677777                           8999


Q ss_pred             CCCeEEEee-----CCCceEEC
Q 012799          440 DSRLLLSGS-----KDSTLKVT  456 (456)
Q Consensus       440 dg~~l~s~s-----~Dg~v~iW  456 (456)
                      ||+.|+.+.     .|+.|.||
T Consensus       489 ~g~~~~~s~~~~~~~~~~i~v~  510 (543)
T 1nir_A          489 RGDEVWFSVWNGKNDSSALVVV  510 (543)
T ss_dssp             SSSEEEEEEECCTTSCCEEEEE
T ss_pred             CCCEEEEEeecCCCCCCeEEEE
Confidence            999888662     47999987

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=1.1e-26  Score=232.30  Aligned_cols=275  Identities=15%  Similarity=0.160  Sum_probs=211.9

Q ss_pred             cccEEEEEECCCCCeEEEEEC-CC-----cEEEEeCCCCcceeEEecCCC------------------------CEEEEE
Q 012799          108 TEAVLSVAFSPDGRQLASGSG-DT-----TVRLWDLNTQTPMFKCTGHKN------------------------WVLCIA  157 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~-d~-----~v~vwd~~~~~~~~~~~~~~~------------------------~v~~~~  157 (456)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+..+..                        .+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            557999999999999999998 88     899999999887766655433                        378999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCC---CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 012799          158 WSADGKHLVSGSKAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI  234 (456)
Q Consensus       158 ~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  234 (456)
                      |+|||++|++++. +.|.+||+.++   ...  .+..+...+..++|+|     +|+++++++. +.|++||+.+++...
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~--~l~~~~~~~~~~~~SP-----DG~~la~~~~-~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVR--QLTHGEGFATDAKLSP-----KGGFVSFIRG-RNLWVIDLASGRQMQ  186 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCC--BCCCSSSCEEEEEECT-----TSSEEEEEET-TEEEEEETTTTEEEE
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEE--EcccCCcccccccCCC-----CCCEEEEEeC-CcEEEEecCCCCEEE
Confidence            9999999999887 89999999988   433  4666778899999999     9999998875 689999999988766


Q ss_pred             EecCcCcc----------------EEEEEeCCCC-eEEEEeCCC---------------------------------cEE
Q 012799          235 CLSGHTLA----------------VTCVKWGGDG-VIYTGSQDC---------------------------------TIK  264 (456)
Q Consensus       235 ~~~~~~~~----------------v~~~~~~~~~-~l~~~~~dg---------------------------------~i~  264 (456)
                      ....+...                +..++|+|+| .|++++.|+                                 .|+
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            55444332                4779999999 788777665                                 789


Q ss_pred             EEECCC-CeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC----
Q 012799          265 VWETTQ-GKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD----  337 (456)
Q Consensus       265 iwd~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----  337 (456)
                      +||+.+ ++......  .+...+..++| |+                                    +++|++++.    
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pD------------------------------------g~~l~~~~~~~~~  309 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RD------------------------------------PQHLSFQRQSRDQ  309 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EE------------------------------------TTEEEEEEEETTS
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CC------------------------------------CCEEEEEEecccC
Confidence            999988 77655443  36778899999 98                                    455665543    


Q ss_pred             -CCcEEEEecCCCCCCccccccccc----cEeEEEECCCCCEEEEEECCCcEEEEeCC-CCeEEEEEecccccEEEEEee
Q 012799          338 -DFTMFLWEPAVSKQPKTRMTGHQQ----LVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQIRFE  411 (456)
Q Consensus       338 -dg~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~  411 (456)
                       +..|++||+.++.. ...+..+..    .+..++|+|||+++++++.||.++||.+. +++ ...+..|...+..+.  
T Consensus       310 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~--  385 (741)
T 2ecf_A          310 KKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELL--  385 (741)
T ss_dssp             SEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEE--
T ss_pred             CeEEEEEEECCCCce-EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEe--
Confidence             56899999776543 333333332    45688999999999999999988888765 355 677777777777651  


Q ss_pred             eeeeecCCCCceeeecccccccceeEecCCCeEEE-eeCCC--ceEEC
Q 012799          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS-GSKDS--TLKVT  456 (456)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s-~s~Dg--~v~iW  456 (456)
                                              .|+|||+.|+. ++.|+  .++||
T Consensus       386 ------------------------~~s~dg~~l~~~~~~~~~~~~~l~  409 (741)
T 2ecf_A          386 ------------------------AVDEKAGLAYFRAGIESARESQIY  409 (741)
T ss_dssp             ------------------------EEETTTTEEEEEECSSCTTCBEEE
T ss_pred             ------------------------EEeCCCCEEEEEEeCCCCceEEEE
Confidence                                    48999987754 45555  78887

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=2.7e-26  Score=202.93  Aligned_cols=253  Identities=17%  Similarity=0.189  Sum_probs=192.8

Q ss_pred             EECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CCCccccccCc-ccceEEEEecc
Q 012799          126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT-GKPSGNPLSGH-KKWITGISWEP  203 (456)
Q Consensus       126 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~-~~~v~~~~~~~  203 (456)
                      ++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++... ....+ ...+.+++|+|
T Consensus        18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK-VDTGFATICNNDHGISP   94 (297)
T ss_dssp             CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-CCCTTCCCBCSCCEECT
T ss_pred             CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-eccccccccccceEECC
Confidence            457889999999987765 4556899999999999999999987 78999999998 76654 33334 46788999999


Q ss_pred             cccCCCCCEEEEEe--CCCcEEEE--ECCCCeEEEEecCcCccEEEEEeCCCC-eEE-EEeCCCcEEEEECCC-CeEEEE
Q 012799          204 VHLNAPCRRFVSAS--KDGDARIW--DVSLRKCVICLSGHTLAVTCVKWGGDG-VIY-TGSQDCTIKVWETTQ-GKLIRE  276 (456)
Q Consensus       204 ~~~~~~~~~l~~~~--~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~i~iwd~~~-~~~~~~  276 (456)
                           +++.+++++  .++...+|  +..+++ ...+..+ ..+..++|+|++ .++ ++..++.+++|++.. +.....
T Consensus        95 -----dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~  167 (297)
T 2ojh_A           95 -----DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR  167 (297)
T ss_dssp             -----TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             -----CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence                 999999998  33445554  555544 3344433 348899999999 555 788899999998532 233455


Q ss_pred             eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe-CCCcEEEEecCCCCCCccc
Q 012799          277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTR  355 (456)
Q Consensus       277 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~  355 (456)
                      +..+...+.++.|+|+                                    ++.++.++ .++.+.+|++.........
T Consensus       168 ~~~~~~~~~~~~~s~d------------------------------------g~~l~~~~~~~~~~~i~~~~~~~~~~~~  211 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPD------------------------------------GRWIYFNSSRTGQMQIWRVRVDGSSVER  211 (297)
T ss_dssp             CCCSSSCEEEEEECTT------------------------------------SSEEEEEECTTSSCEEEEEETTSSCEEE
T ss_pred             cccCCCccccceECCC------------------------------------CCEEEEEecCCCCccEEEECCCCCCcEE
Confidence            6667788999999998                                    44466555 5899999997654555566


Q ss_pred             cccccccEeEEEECCCCCEEEEEECC-----------CcEEEEeCCCCeE--EEEEecccccEEEEEeeeeeeecCCCCc
Q 012799          356 MTGHQQLVNHVYFSPDGQWVASASFD-----------KSIKLWNGTTGKF--VAVFRGHVGPVYQIRFELIYCFRYPSNF  422 (456)
Q Consensus       356 ~~~~~~~v~~~~~sp~~~~l~s~~~d-----------g~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~  422 (456)
                      +..|...+..++|+|+|++|++++.+           +.|++||+.+++.  +..+.+|...+..+              
T Consensus       212 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--------------  277 (297)
T 2ojh_A          212 ITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSP--------------  277 (297)
T ss_dssp             CCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSC--------------
T ss_pred             EecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccc--------------
Confidence            77788889999999999999888766           5699999988765  44444677777777              


Q ss_pred             eeeecccccccceeEecCCCeEEEeeCCC
Q 012799          423 YCVVDMSCCMSLYSWSADSRLLLSGSKDS  451 (456)
Q Consensus       423 ~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg  451 (456)
                                   +|+|||++|++++.|.
T Consensus       278 -------------~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          278 -------------NWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             -------------CBCTTSSEEEEEEECC
T ss_pred             -------------eECCCCCEEEEEEecc
Confidence                         8999999999888764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=8.2e-25  Score=198.68  Aligned_cols=271  Identities=14%  Similarity=0.136  Sum_probs=209.3

Q ss_pred             CcccEEEEEECCCCCeEEEEEC-------CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEe
Q 012799          107 HTEAVLSVAFSPDGRQLASGSG-------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWD  178 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~-------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd  178 (456)
                      ....+..++|+|+++++++++.       ++.|.+||..+++.+..+.. ...+..++|+|++++++++ ..++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            3456789999999998888874       56899999999988887764 3457889999999966554 5579999999


Q ss_pred             CCCCCCccccccCccc--------ceEEEEecccccCCCCCEEEEEe--CCCcEEEEECCCCeEEEEecCcCccEEEEEe
Q 012799          179 PQTGKPSGNPLSGHKK--------WITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKW  248 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  248 (456)
                      ..+++...........        .+.++.|+|     +++.+++++  .++.|.+||..+++.+..+..+...+.+++|
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-----ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL  192 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-----TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECC-----CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence            9998865432222111        268899998     888777776  4789999999999998888756666889999


Q ss_pred             CCCC-eEEEEeCCCcEEEEECCCCeEEEEeec----CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799          249 GGDG-VIYTGSQDCTIKVWETTQGKLIRELKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (456)
Q Consensus       249 ~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (456)
                      +|++ .+++++.++.|.+||+.+++....+..    +...+..++++|+                               
T Consensus       193 s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-------------------------------  241 (353)
T 3vgz_A          193 DSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA-------------------------------  241 (353)
T ss_dssp             ETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT-------------------------------
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC-------------------------------
Confidence            9998 888889999999999999998887764    4456778999988                               


Q ss_pred             ccCCCCCEEEEEe-CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEE-CCCcEEEEeCCCCeEEEEEecc
Q 012799          324 IKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGH  401 (456)
Q Consensus       324 ~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~  401 (456)
                           ++++++++ .++.|.+||+.+... ...+....  ...++|+|+|+++++++ .++.|.+||..+++.+..+..+
T Consensus       242 -----g~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~  313 (353)
T 3vgz_A          242 -----RQRAFITDSKAAEVLVVDTRNGNI-LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP  313 (353)
T ss_dssp             -----TTEEEEEESSSSEEEEEETTTCCE-EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             -----CCEEEEEeCCCCEEEEEECCCCcE-EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC
Confidence                 44455544 559999999866543 22232222  25699999999766555 6899999999999998888754


Q ss_pred             cccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCC
Q 012799          402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD  450 (456)
Q Consensus       402 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D  450 (456)
                      . .+.++                           +|+|||++|+.+..+
T Consensus       314 ~-~~~~~---------------------------~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          314 T-HPNSL---------------------------ALSADGKTLYVSVKQ  334 (353)
T ss_dssp             S-EEEEE---------------------------EECTTSCEEEEEEEC
T ss_pred             C-CCCeE---------------------------EEcCCCCEEEEEEcc
Confidence            3 56777                           899999977776655

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.1e-25  Score=214.50  Aligned_cols=272  Identities=11%  Similarity=0.033  Sum_probs=210.6

Q ss_pred             EECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCCCccccccCc
Q 012799          115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP--QTGKPSGNPLSGH  192 (456)
Q Consensus       115 ~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~~~  192 (456)
                      +|+|++.++++++.|++|.+||..+++.+.++..+.. +..++|+|+|++|++++.|+.|.+||+  .+++.+.. +. +
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~-i~-~  220 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE-IK-I  220 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE-EE-C
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE-Ee-c
Confidence            3889999999999999999999999999988884433 899999999999999999999999999  77765542 22 3


Q ss_pred             ccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCeEEEEecCc-----------CccEEEEEeCCCC--eEEEEe
Q 012799          193 KKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGH-----------TLAVTCVKWGGDG--VIYTGS  258 (456)
Q Consensus       193 ~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~--~l~~~~  258 (456)
                      ...+..++|+|.. ..+|+++++++ .+++|.+||..+++++..+..+           ...+..+.+++++  .+++..
T Consensus       221 g~~p~~va~sp~~-~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          221 GIEARSVESSKFK-GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             CSEEEEEEECCST-TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCcceEEeCCCc-CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence            4557888887611 01567888887 4899999999999988887542           2368899999977  667777


Q ss_pred             CCCcEEEEECCCCeEEE--EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE-EE
Q 012799          259 QDCTIKVWETTQGKLIR--ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SG  335 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~  335 (456)
                      .++.|.+||..+.+.+.  .+. +...+..+.|+|+                                    +++++ ++
T Consensus       300 ~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spd------------------------------------g~~l~va~  342 (543)
T 1nir_A          300 ETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSS------------------------------------HRYFMTAA  342 (543)
T ss_dssp             TTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTT------------------------------------SCEEEEEE
T ss_pred             CCCeEEEEEecCCCcceeEEec-cCcCccCceECCC------------------------------------CCEEEEEe
Confidence            89999999998865433  343 4556778888887                                    45455 45


Q ss_pred             eCCCcEEEEecCCCCCCccccc----cccccEeEEEECCC-CCEEEEEE-CCCcEEEEeCCC-------CeEEEEEeccc
Q 012799          336 SDDFTMFLWEPAVSKQPKTRMT----GHQQLVNHVYFSPD-GQWVASAS-FDKSIKLWNGTT-------GKFVAVFRGHV  402 (456)
Q Consensus       336 ~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~sp~-~~~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~  402 (456)
                      ..+++|.+||..+++ ....+.    .|......+ ++|+ +.+++++. .|++|.+||+.+       ++.++++.+|.
T Consensus       343 ~~~~~v~v~D~~tg~-l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g  420 (543)
T 1nir_A          343 NNSNKVAVIDSKDRR-LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG  420 (543)
T ss_dssp             GGGTEEEEEETTTTE-EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred             cCCCeEEEEECCCCe-EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC
Confidence            568999999987654 333332    254433333 4676 66677765 689999999998       89999999998


Q ss_pred             ccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEee-------CCCceEEC
Q 012799          403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-------KDSTLKVT  456 (456)
Q Consensus       403 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s-------~Dg~v~iW  456 (456)
                      +.+..+                           +++|||++|++++       .+++|.||
T Consensus       421 ~~~~~v---------------------------~~~pdg~~l~v~~~~~~~~~~~~~v~v~  454 (543)
T 1nir_A          421 GGSLFI---------------------------KTHPKSSHLYVDTTFNPDARISQSVAVF  454 (543)
T ss_dssp             SCCCCE---------------------------ECCTTCCEEEECCTTCSSHHHHTCEEEE
T ss_pred             CCceEE---------------------------EcCCCCCcEEEecCCCCCcccCceEEEE
Confidence            887777                           8899999999987       37789887

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=1.1e-24  Score=195.98  Aligned_cols=275  Identities=12%  Similarity=0.119  Sum_probs=193.9

Q ss_pred             EEECCCCCe-EEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCCccccccC
Q 012799          114 VAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGKPSGNPLSG  191 (456)
Q Consensus       114 ~~~s~~~~~-l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~  191 (456)
                      ..|.+++++ +++++.++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++........
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            345665554 6677789999999999999888887777777 9999999997776665 889999999988762223444


Q ss_pred             cccceEEEEecccccCCCCCEEEEEeCCC---cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE-eCCCc-EEE
Q 012799          192 HKKWITGISWEPVHLNAPCRRFVSASKDG---DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG-SQDCT-IKV  265 (456)
Q Consensus       192 ~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~-i~i  265 (456)
                      +.....+++|+|     ++++++++..++   .|.+||+.+++.+..+.. .....+++|+|+| .++++ ..++. |.+
T Consensus        82 ~~~~~~~~~~s~-----dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~  155 (331)
T 3u4y_A           82 GQSSMADVDITP-----DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRR  155 (331)
T ss_dssp             CSSCCCCEEECT-----TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEE
T ss_pred             CCCCccceEECC-----CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEE
Confidence            455554589998     899998665553   899999999998887764 3456899999999 45544 55688 999


Q ss_pred             EECCCCeEE----EEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE-EEEEeCCCc
Q 012799          266 WETTQGKLI----RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDDFT  340 (456)
Q Consensus       266 wd~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~  340 (456)
                      |++.....+    ............++++|+                                    +++ ++++..++.
T Consensus       156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~spd------------------------------------g~~l~v~~~~~~~  199 (331)
T 3u4y_A          156 FKIDADGVLFDTGQEFISGGTRPFNITFTPD------------------------------------GNFAFVANLIGNS  199 (331)
T ss_dssp             EEECTTCCEEEEEEEEECSSSSEEEEEECTT------------------------------------SSEEEEEETTTTE
T ss_pred             EEECCCCcEeecCCccccCCCCccceEECCC------------------------------------CCEEEEEeCCCCe
Confidence            998764332    112233455788889887                                    443 455557899


Q ss_pred             EEEEecCCCCCC--ccccccccccEeEEEECCCCCEEEEEE-CCCcEEEEeCCCCeE--EEEEecc----cccEEEEEee
Q 012799          341 MFLWEPAVSKQP--KTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKF--VAVFRGH----VGPVYQIRFE  411 (456)
Q Consensus       341 i~iwd~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~----~~~v~~i~~~  411 (456)
                      |.+||+......  ...+. ....+..++|+|+|++|++++ .++.|.+||..+++.  +..+..+    ..+.      
T Consensus       200 v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~------  272 (331)
T 3u4y_A          200 IGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL------  272 (331)
T ss_dssp             EEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGG------
T ss_pred             EEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCc------
Confidence            999998765431  33333 335678899999999766554 578899999999877  3333321    1110      


Q ss_pred             eeeeecCCCCceeeecccccccceeEecCCCeEEEee-CCCceEEC
Q 012799          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVT  456 (456)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s-~Dg~v~iW  456 (456)
                                        .....++|+|||++|+.++ .++.|+||
T Consensus       273 ------------------~~~~~~~~spdg~~l~v~~~~~~~v~v~  300 (331)
T 3u4y_A          273 ------------------FGANQMALNKTETKLFISANISRELKVF  300 (331)
T ss_dssp             ------------------TTCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ------------------ccccceEECCCCCEEEEecCCCCcEEEE
Confidence                              0112348999999886655 46689987

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=3e-26  Score=228.47  Aligned_cols=277  Identities=13%  Similarity=0.120  Sum_probs=200.5

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCC---CEEEEEEcCCCCEEEEEeCC---------CeEEEE
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSADGKHLVSGSKA---------GELQCW  177 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~d---------g~i~vw  177 (456)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+..|..   .|.+++|+|||++|++++.+         +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678999999998776 6899999999999988877777665   49999999999999999874         788899


Q ss_pred             eCCCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccE-------------
Q 012799          178 DPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-------------  243 (456)
Q Consensus       178 d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-------------  243 (456)
                      |+.+++... .....|...+..++|+|     +|+.+++++. +.|++||+.+++.......+...+             
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SP-----dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee  170 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGP-----KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE  170 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCS-----STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred             ECCCCceEeccCCccccccccccEECC-----CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence            999887521 12234445588899999     9999999887 799999999888776655444333             


Q ss_pred             -----EEEEeCCCC-eEEEEeCCC----------------------------------cEEEEECCCCeEEEEeecC---
Q 012799          244 -----TCVKWGGDG-VIYTGSQDC----------------------------------TIKVWETTQGKLIRELKGH---  280 (456)
Q Consensus       244 -----~~~~~~~~~-~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~---  280 (456)
                           .+++|+|+| .|++++.++                                  .|++||+.+++....+..+   
T Consensus       171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~  250 (723)
T 1xfd_A          171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP  250 (723)
T ss_dssp             TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred             eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence                 789999999 777776543                                  7999999888765555543   


Q ss_pred             ---CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC----CCcEEEEecCCCCCCc
Q 012799          281 ---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD----DFTMFLWEPAVSKQPK  353 (456)
Q Consensus       281 ---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~  353 (456)
                         ...+..++|+|++                                    +++++...    +..|++||+.++....
T Consensus       251 ~~~~~~~~~~~~SpDg------------------------------------~~l~~~~~~~~~~~~i~~~d~~~g~~~~  294 (723)
T 1xfd_A          251 RMREYYITMVKWATST------------------------------------KVAVTWLNRAQNVSILTLCDATTGVCTK  294 (723)
T ss_dssp             GGSSEEEEEEEESSSS------------------------------------EEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             CCccceeEEEEEeCCC------------------------------------eEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence               5678899999984                                    34655433    3579999977654322


Q ss_pred             cccccccccE----eEEEECCCCCEEEE--EECCC------cEEEEe-CCCCe--EEEEEecccccEEE-EEeeeeeeec
Q 012799          354 TRMTGHQQLV----NHVYFSPDGQWVAS--ASFDK------SIKLWN-GTTGK--FVAVFRGHVGPVYQ-IRFELIYCFR  417 (456)
Q Consensus       354 ~~~~~~~~~v----~~~~~sp~~~~l~s--~~~dg------~i~iwd-~~~~~--~~~~~~~~~~~v~~-i~~~~~~~~~  417 (456)
                      .....+...+    ..++|+|||+.|+.  +..+|      .|.+|| ...++  ....+..+...+.. +         
T Consensus       295 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~---------  365 (723)
T 1xfd_A          295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKIL---------  365 (723)
T ss_dssp             EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEE---------
T ss_pred             EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeee---------
Confidence            2112233433    37899999997765  45677      577777 34444  13344433333333 4         


Q ss_pred             CCCCceeeecccccccceeEecCCCeEEEeeCC---CceEEC
Q 012799          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD---STLKVT  456 (456)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D---g~v~iW  456 (456)
                                        +|+|||+.|+..+.+   +.++||
T Consensus       366 ------------------~~spdg~~l~~~~~~~~~~~~~l~  389 (723)
T 1xfd_A          366 ------------------AYDEKGNKIYFLSTEDLPRRRQLY  389 (723)
T ss_dssp             ------------------EEETTTTEEEEEESSSCTTCCEEE
T ss_pred             ------------------EEcCCCCEEEEEEcCCCCcceEEE
Confidence                              899999999876655   778876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=6.7e-25  Score=198.35  Aligned_cols=264  Identities=12%  Similarity=0.143  Sum_probs=184.7

Q ss_pred             eEEEEECCCcEEEEeCCC-Cc-ceeEEecCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEeCC--CCCCccc-cccCcccc
Q 012799          122 QLASGSGDTTVRLWDLNT-QT-PMFKCTGHKNWVLCIAWSADGKHLVSGSKA-GELQCWDPQ--TGKPSGN-PLSGHKKW  195 (456)
Q Consensus       122 ~l~~~~~d~~v~vwd~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~vwd~~--~~~~~~~-~~~~~~~~  195 (456)
                      ++++++.|+.|++|++.. ++ .......+...+.+++|+|++++|++++.+ +.|.+|++.  +++.... .... ...
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-PGS   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-SSC
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-CCC
Confidence            344447799999999963 32 122223577889999999999999988886 999999997  5543211 1222 237


Q ss_pred             eEEEEecccccCCCCCEEEEEeC-CCcEEEEEC---CCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CCCcEEEEECC
Q 012799          196 ITGISWEPVHLNAPCRRFVSASK-DGDARIWDV---SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDCTIKVWETT  269 (456)
Q Consensus       196 v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~---~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg~i~iwd~~  269 (456)
                      +..++|+|     +++++++++. ++.|.+||+   ...+....+.. ...+.+++|+|++ .+++++ .++.|.+||+.
T Consensus        86 ~~~~~~s~-----dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A           86 LTHISTDH-----QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             CSEEEECT-----TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CcEEEEcC-----CCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence            78999999     8888877665 888999999   44445555543 3458899999999 677776 89999999998


Q ss_pred             C-CeEEE----Eeec-CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE-EEeCCCcEE
Q 012799          270 Q-GKLIR----ELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDFTMF  342 (456)
Q Consensus       270 ~-~~~~~----~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~  342 (456)
                      + ++...    .+.. ....+..++|+|+                                    +++++ ++..++.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pd------------------------------------g~~l~~~~~~~~~i~  203 (343)
T 1ri6_A          160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPN------------------------------------EQYAYCVNELNSSVD  203 (343)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTT------------------------------------SSEEEEEETTTTEEE
T ss_pred             CCCceeeecccccccCCCCCcceEEECCC------------------------------------CCEEEEEeCCCCEEE
Confidence            7 65432    2222 3446778999987                                    44454 455889999


Q ss_pred             EEecCCCC-CC--cccc---c-c--ccccEeEEEECCCCCEEEE-EECCCcEEEEeCC--C--CeEEEEEecccccEEEE
Q 012799          343 LWEPAVSK-QP--KTRM---T-G--HQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGT--T--GKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       343 iwd~~~~~-~~--~~~~---~-~--~~~~v~~~~~sp~~~~l~s-~~~dg~i~iwd~~--~--~~~~~~~~~~~~~v~~i  408 (456)
                      +||+.... ..  ....   . +  ....+..++|+|+|++|++ +..++.|.+||+.  +  .+.+..+..+.. +.++
T Consensus       204 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~  282 (343)
T 1ri6_A          204 VWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGF  282 (343)
T ss_dssp             EEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCE
T ss_pred             EEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceE
Confidence            99985422 11  1111   1 1  1235678999999998775 4478999999998  2  344444544433 5555


Q ss_pred             EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEee-CCCceEEC
Q 012799          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVT  456 (456)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s-~Dg~v~iW  456 (456)
                                                 +|+|+|++|++++ .|+.|++|
T Consensus       283 ---------------------------~~s~dg~~l~~~~~~~~~v~v~  304 (343)
T 1ri6_A          283 ---------------------------NVDHSGKYLIAAGQKSHHISVY  304 (343)
T ss_dssp             ---------------------------EECTTSSEEEEECTTTCEEEEE
T ss_pred             ---------------------------EECCCCCEEEEecCCCCeEEEE
Confidence                                       8999999888887 68999987

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=5.8e-26  Score=234.51  Aligned_cols=319  Identities=13%  Similarity=0.088  Sum_probs=226.1

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECC------CcEEEEeCCCCcceeEEecCCCCE-------EEEEEcCCCCE
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGD------TTVRLWDLNTQTPMFKCTGHKNWV-------LCIAWSADGKH  164 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d------~~v~vwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~  164 (456)
                      +...+.|.+|...|.+++|||||++||+++.+      ..|++|++.+++ ...+..|...+       ..++|+|||++
T Consensus        42 gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~l  120 (1045)
T 1k32_A           42 SGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNL  120 (1045)
T ss_dssp             TCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCE
T ss_pred             CCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEE
Confidence            44567788999999999999999999988643      379999998766 56778888888       99999999997


Q ss_pred             EEEEeCC------CeEEEEeCCCCCCccc------------------------------------------------ccc
Q 012799          165 LVSGSKA------GELQCWDPQTGKPSGN------------------------------------------------PLS  190 (456)
Q Consensus       165 l~s~~~d------g~i~vwd~~~~~~~~~------------------------------------------------~~~  190 (456)
                      +++++.+      ..|.+|++.+++....                                                .+.
T Consensus       121 l~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~  200 (1045)
T 1k32_A          121 IISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV  200 (1045)
T ss_dssp             EEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE
T ss_pred             EEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECc
Confidence            7777754      3588888766542210                                                012


Q ss_pred             CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEEC
Q 012799          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWET  268 (456)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~  268 (456)
                      +|...+.++.|++     + ..+++++.++.+.+|.+.. +.....+..|. .+...+|+|+| .++.+ .++.|++||+
T Consensus       201 ~~~~~v~~~~~s~-----d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~  272 (1045)
T 1k32_A          201 DMSTHVSSPVIVG-----H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP  272 (1045)
T ss_dssp             CCSSCCEEEEEET-----T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred             CCCCcccceEEeC-----C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence            3445566667765     4 5666777889999998653 33444555554 35667999999 56655 5899999999


Q ss_pred             CCCeEEEEeec-----------CCcceEEEEec-CcceeeeccccCCCCccCChHHHHH----HHH-hhhhhccCCCCCE
Q 012799          269 TQGKLIRELKG-----------HGHWVNSLALS-TEYALRTGAFDHTGKQYSSPEEMKK----AAL-ERYNKIKGNAPER  331 (456)
Q Consensus       269 ~~~~~~~~~~~-----------~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~  331 (456)
                      ...+ +..+..           +...+.+++|+ |++.......+.....+........    ... ......+. +++.
T Consensus       273 ~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~  350 (1045)
T 1k32_A          273 DTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVA  350 (1045)
T ss_dssp             TTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEE
T ss_pred             CceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCe
Confidence            5443 335544           23468999999 9986443332221111111000000    000 01112244 6778


Q ss_pred             EEEEeCCCcEE-EEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799          332 LVSGSDDFTMF-LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       332 l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      +++++.++.+. +||+.... .. .+.+|...+..++|+|||++|++++.++.|++||+.+++....+.+|.+.+.++  
T Consensus       351 l~~~s~~~~l~~~~d~~~~~-~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~--  426 (1045)
T 1k32_A          351 FIHGTREGDFLGIYDYRTGK-AE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF--  426 (1045)
T ss_dssp             EEEEETTEEEEEEEETTTCC-EE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE--
T ss_pred             EEEEECCCceEEEEECCCCC-ce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce--
Confidence            88888888888 89976543 22 333777889999999999999999999999999999999888887898888888  


Q ss_pred             eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC----------ceEEC
Q 012799          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS----------TLKVT  456 (456)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg----------~v~iW  456 (456)
                                               +|||||++|++++.++          .|++|
T Consensus       427 -------------------------~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~  457 (1045)
T 1k32_A          427 -------------------------TISDNSRFIAYGFPLKHGETDGYVMQAIHVY  457 (1045)
T ss_dssp             -------------------------EECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             -------------------------EECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence                                     9999999999988754          88887

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=8.9e-25  Score=197.04  Aligned_cols=271  Identities=11%  Similarity=0.080  Sum_probs=197.7

Q ss_pred             CeEEEEECCCcEEEEeCCCCcceeEEecCCC--CEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCccccccCc----c
Q 012799          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKN--WVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSGH----K  193 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~----~  193 (456)
                      ++|++++.++.|++||..+++.+..+.....  .+..++|+|++++++ ++..++.|.+||+.+++........+    .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4789999999999999999988877763322  588999999998765 55567899999999887654322222    2


Q ss_pred             cceEEEEecccccCCCCCEEEEEe------------CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCC
Q 012799          194 KWITGISWEPVHLNAPCRRFVSAS------------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD  260 (456)
Q Consensus       194 ~~v~~~~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d  260 (456)
                      ..+..++|+|     +++++++++            .++.|.+||+.+++.+..+.. ...+.+++|+|++ .++++  +
T Consensus        82 ~~~~~~~~s~-----dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~  153 (337)
T 1pby_B           82 KSLFGAALSP-----DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--G  153 (337)
T ss_dssp             ECTTCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--S
T ss_pred             ccccceEECC-----CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--C
Confidence            3567888988     888888886            579999999999988877754 4557889999999 56666  6


Q ss_pred             CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE----EEEEe
Q 012799          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER----LVSGS  336 (456)
Q Consensus       261 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~  336 (456)
                      +.|.+||+.+++....+..+.. ...+.++|++.........                          +..    ...+.
T Consensus       154 ~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~--------------------------~~~~~~~~~~~~  206 (337)
T 1pby_B          154 RDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHES--------------------------SGVMATPFYTAR  206 (337)
T ss_dssp             SSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTT--------------------------TTEEEEEEEEEB
T ss_pred             CeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccC--------------------------CCceeeeeeccc
Confidence            8999999999988877764331 1122556664321111000                          000    11111


Q ss_pred             CCC----------cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEE
Q 012799          337 DDF----------TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (456)
Q Consensus       337 ~dg----------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  406 (456)
                      .++          .|.+||+............+...+.+++|+|+|++|+++  ++.|.+||+.+++.+..+..+ ..+.
T Consensus       207 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~  283 (337)
T 1pby_B          207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYY  283 (337)
T ss_dssp             TTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCC
T ss_pred             cccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-Ccee
Confidence            122          589999876654333344556678899999999999888  799999999999988877643 3456


Q ss_pred             EEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       407 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ++                           +|+|||++|++++.|+.|++|
T Consensus       284 ~~---------------------------~~s~dg~~l~~~~~~~~i~v~  306 (337)
T 1pby_B          284 SV---------------------------NVSTDGSTVWLGGALGDLAAY  306 (337)
T ss_dssp             EE---------------------------EECTTSCEEEEESBSSEEEEE
T ss_pred             eE---------------------------EECCCCCEEEEEcCCCcEEEE
Confidence            66                           899999999999999999987

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=3.2e-25  Score=221.63  Aligned_cols=266  Identities=13%  Similarity=0.105  Sum_probs=203.4

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  187 (456)
                      .|.+++|||||++|++++. +.|++||+.++.  ....+..|...+.+++|+|||++|++++ ++.|.+||+.+++... 
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~-  186 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ-  186 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE-
Confidence            4889999999999999986 899999998873  4556677888999999999999999987 4699999999876543 


Q ss_pred             cccCcccc----------------eEEEEecccccCCCCCEEEEEeCCC-------------------------------
Q 012799          188 PLSGHKKW----------------ITGISWEPVHLNAPCRRFVSASKDG-------------------------------  220 (456)
Q Consensus       188 ~~~~~~~~----------------v~~~~~~~~~~~~~~~~l~~~~~dg-------------------------------  220 (456)
                      ....+...                +..+.|+|     +|+.|++++.|+                               
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-----Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-----DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-----TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             eccCCccceeccccceeeeeccccccceEECC-----CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            22222221                46789999     999999988765                               


Q ss_pred             --cEEEEECCC-CeEEEEec--CcCccEEEEEeCCCC-eEEEEeC-----CCcEEEEECCCCeEEEEeecCCc----ceE
Q 012799          221 --DARIWDVSL-RKCVICLS--GHTLAVTCVKWGGDG-VIYTGSQ-----DCTIKVWETTQGKLIRELKGHGH----WVN  285 (456)
Q Consensus       221 --~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~----~i~  285 (456)
                        .|++||+.+ ++......  .|...+..++| |+| .|++++.     +..|++||+.+++....+..+..    .+.
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence              789999988 77655443  47788999999 999 6665543     56799999999987776655432    345


Q ss_pred             EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeE
Q 012799          286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH  365 (456)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  365 (456)
                      .++|+|+                                    ++++++++.||.+.+|.+..... ...+..|...+..
T Consensus       341 ~~~~spd------------------------------------g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~  383 (741)
T 2ecf_A          341 SLRFLDD------------------------------------GSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDE  383 (741)
T ss_dssp             CCEECTT------------------------------------SCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEE
T ss_pred             ceEECCC------------------------------------CeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEe
Confidence            7788887                                    45688889999888887654334 5666777788888


Q ss_pred             E-EECCCCCEEEE-EECCC--cEEEEeCCC-CeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecC
Q 012799          366 V-YFSPDGQWVAS-ASFDK--SIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD  440 (456)
Q Consensus       366 ~-~~sp~~~~l~s-~~~dg--~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  440 (456)
                      + .|+|+|+.|+. ++.++  .+++|++.. +.....+.. ...+.++                           +|+||
T Consensus       384 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~---------------------------~~spd  435 (741)
T 2ecf_A          384 LLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSA---------------------------SFARN  435 (741)
T ss_dssp             EEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEE---------------------------EECTT
T ss_pred             EeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEE---------------------------EECCC
Confidence            7 59999998755 44455  899999864 555566654 5566777                           89999


Q ss_pred             CCeEEEeeC
Q 012799          441 SRLLLSGSK  449 (456)
Q Consensus       441 g~~l~s~s~  449 (456)
                      |++|+....
T Consensus       436 g~~l~~~~~  444 (741)
T 2ecf_A          436 ASVYVDSWS  444 (741)
T ss_dssp             SSEEEEEEE
T ss_pred             CCEEEEEec
Confidence            998887644

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=1.8e-24  Score=214.99  Aligned_cols=273  Identities=12%  Similarity=0.114  Sum_probs=202.5

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----CC
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT-----GK  183 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~  183 (456)
                      ..|.+++|+|| +.++.+. ++.|++||+.+++.. .+..+...+.+++|+|||++|+++ .++.|.+|++.+     ++
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            57999999999 6666554 589999999887654 445577789999999999999985 679999999998     76


Q ss_pred             CccccccCcccc--------------eEEEEecccccCCCCCEEEEEe--------------------------------
Q 012799          184 PSGNPLSGHKKW--------------ITGISWEPVHLNAPCRRFVSAS--------------------------------  217 (456)
Q Consensus       184 ~~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~~l~~~~--------------------------------  217 (456)
                      ... ....+...              +.++.|+|     +|++|++++                                
T Consensus       158 ~~~-~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-----Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~  231 (706)
T 2z3z_A          158 AIA-VTIDGTETLVYGQAVHQREFGIEKGTFWSP-----KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP  231 (706)
T ss_dssp             CEE-SCSCCBTTEEESSCCGGGCTTCCCSEEECT-----TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred             cEE-eccCCCCCeEcccchhhhhcCCCceEEECC-----CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence            543 22222222              47899999     999999987                                


Q ss_pred             -CCCcEEEEECCCCeEEEEec--CcCccEEEEEeCCCC-eEEEEeCCC-----cEEEEECCCCeEEEEee-c-CCc---c
Q 012799          218 -KDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDG-VIYTGSQDC-----TIKVWETTQGKLIRELK-G-HGH---W  283 (456)
Q Consensus       218 -~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~-~~~---~  283 (456)
                       .+..|++||+.+++......  .+...+.+++|+|+| .+++++.++     .|++||+.+++....+. . +..   .
T Consensus       232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~  311 (706)
T 2z3z_A          232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP  311 (706)
T ss_dssp             CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred             CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence             44679999999988655442  466789999999999 687777665     89999999984333332 1 221   2


Q ss_pred             eEEEEecC--cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccc
Q 012799          284 VNSLALST--EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ  361 (456)
Q Consensus       284 i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  361 (456)
                      +..+.|+|  +                                    +.+++++..|+.+++|++.........+..+..
T Consensus       312 ~~~~~~sp~~d------------------------------------g~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~  355 (706)
T 2z3z_A          312 LHPLTFLPGSN------------------------------------NQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEW  355 (706)
T ss_dssp             CSCCEECTTCS------------------------------------SEEEEEECTTSSCEEEEEETTSCEEEECCCSSS
T ss_pred             cCCceeecCCC------------------------------------CEEEEEEccCCccEEEEEECCCCEEEecCCCCe
Confidence            35677877  6                                    456888889999999987644445555667777


Q ss_pred             cEeE-EEECCCCCEEEEEECC-C----cEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccce
Q 012799          362 LVNH-VYFSPDGQWVASASFD-K----SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLY  435 (456)
Q Consensus       362 ~v~~-~~~sp~~~~l~s~~~d-g----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (456)
                      .+.. ++|+|+|+.|+.++.+ +    .|..||..+++ ...+. |...+.++                           
T Consensus       356 ~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~---------------------------  406 (706)
T 2z3z_A          356 EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRT---------------------------  406 (706)
T ss_dssp             CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEE---------------------------
T ss_pred             EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEE---------------------------
Confidence            7876 7999999987665544 4    67777877765 33333 56677777                           


Q ss_pred             eEecCCCeEEEeeCC----CceEEC
Q 012799          436 SWSADSRLLLSGSKD----STLKVT  456 (456)
Q Consensus       436 ~~s~dg~~l~s~s~D----g~v~iW  456 (456)
                      +|+|||++|+.+..+    +.|++|
T Consensus       407 ~~spdg~~l~~~~~~~~~p~~i~l~  431 (706)
T 2z3z_A          407 QLSPDGSAIIDIFQSPTVPRKVTVT  431 (706)
T ss_dssp             EECTTSSEEEEEEECSSCSCEEEEE
T ss_pred             EECCCCCEEEEEecCCCCCcEEEEE
Confidence            899999988876544    457776

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=3e-24  Score=221.73  Aligned_cols=277  Identities=15%  Similarity=0.103  Sum_probs=221.0

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC-CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      ...+.+|...+.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+..++|+|+|+.|+++ .++.|.+|++
T Consensus       196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~  272 (1045)
T 1k32_A          196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP  272 (1045)
T ss_dssp             EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred             eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence            4456899999999999998 6677778889999998753 44455555555 46778999999999887 4889999998


Q ss_pred             CCCCCccccccC-----------cccceEEEEec-ccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc-cEEEE
Q 012799          180 QTGKPSGNPLSG-----------HKKWITGISWE-PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-AVTCV  246 (456)
Q Consensus       180 ~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~  246 (456)
                      ......  .+..           |...+.+++|+ |     +|+.+++++ ++.+++|++..++... +..|.. .+..+
T Consensus       273 ~~~~l~--~l~~~~~~~~~~~~~~~~~v~~~~~S~p-----dG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~  343 (1045)
T 1k32_A          273 DTEKIE--KIEIGDLESPEDRIISIPSKFAEDFSPL-----DGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRR  343 (1045)
T ss_dssp             TTCCEE--ECCCCCCCBCCSEEEECGGGGEEEEEEC-----GGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEE
T ss_pred             CceEee--eeccCcccccccccccccccceeeecCC-----CCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEee
Confidence            443322  2222           34468899999 8     889898888 7899999998876543 566777 89999


Q ss_pred             EeCCCC-eEEEEeCCCcEE-EEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799          247 KWGGDG-VIYTGSQDCTIK-VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (456)
Q Consensus       247 ~~~~~~-~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (456)
                      +|+ +| .++.++.++.+. +||+.+++.... ..+...+..++|+|+                                
T Consensus       344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpD--------------------------------  389 (1045)
T 1k32_A          344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRN--------------------------------  389 (1045)
T ss_dssp             CSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTT--------------------------------
T ss_pred             eEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCC--------------------------------
Confidence            999 88 788888888888 999988765443 367788999999998                                


Q ss_pred             cCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCC----------cEEEEeCCCCeE
Q 012799          325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK----------SIKLWNGTTGKF  394 (456)
Q Consensus       325 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg----------~i~iwd~~~~~~  394 (456)
                          ++++++++.++.|++||+.++. ......+|...+.+++|||||++|++++.++          .|++||+.+++ 
T Consensus       390 ----G~~la~~~~~~~v~~~d~~tg~-~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-  463 (1045)
T 1k32_A          390 ----GKFAVVANDRFEIMTVDLETGK-PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-  463 (1045)
T ss_dssp             ----SSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-
T ss_pred             ----CCEEEEECCCCeEEEEECCCCc-eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-
Confidence                6679999999999999986554 3444557888899999999999998887654          89999999887 


Q ss_pred             EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       395 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +..+..|...+..+                           +|+|||++|+.++.++..++|
T Consensus       464 ~~~l~~~~~~~~~~---------------------------~~spdG~~l~~~s~~~~~~~~  498 (1045)
T 1k32_A          464 IFAATTENSHDYAP---------------------------AFDADSKNLYYLSYRSLDPSP  498 (1045)
T ss_dssp             EEECSCSSSBEEEE---------------------------EECTTSCEEEEEESCCCCCEE
T ss_pred             EEEeeCCCcccCCc---------------------------eEcCCCCEEEEEecccCCcCc
Confidence            66777788888888                           899999999999987766554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.93  E-value=2.1e-24  Score=209.47  Aligned_cols=261  Identities=11%  Similarity=0.009  Sum_probs=191.8

Q ss_pred             cccEEEEEECCCCCeEEEEEC-CCcEEEEeCCCCcceeEEecCC-CCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCC-
Q 012799          108 TEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSGSK---AGELQCWDPQT-  181 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~-d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~-  181 (456)
                      ..+|.+++|+|||+.||+++. ||+++||++++++. ..+..|. ..+..++|+|| +.+++++.   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            567999999999999999886 99999999966554 4455555 68999999999 77777765   45556655433 


Q ss_pred             -CCCccccccCcccceEEEEecccccCCCCCE-EEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799          182 -GKPSGNPLSGHKKWITGISWEPVHLNAPCRR-FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (456)
Q Consensus       182 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~  258 (456)
                       ...........  .+...+|+|     +++. +++.+.++.+.+||+.+++.......+.   .+++|+|+| .+++++
T Consensus        99 ~~g~~~~l~~~~--~~~~~~~s~-----dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~  168 (582)
T 3o4h_A           99 RPGEEQRLEAVK--PMRILSGVD-----TGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLG  168 (582)
T ss_dssp             STTCCEECTTSC--SBEEEEEEE-----CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEE
T ss_pred             CCCccccccCCC--CceeeeeCC-----CCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEE
Confidence             21111122221  233557777     5543 3334444556699999887665544333   789999999 777677


Q ss_pred             CC----CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          259 QD----CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       259 ~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      .+    +.|++||+.+++.. .+..+...+..++|+|+                                    ++.|++
T Consensus       169 ~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpD------------------------------------G~~l~~  211 (582)
T 3o4h_A          169 FFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPG------------------------------------MKVTAG  211 (582)
T ss_dssp             EEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTT------------------------------------SCEEEE
T ss_pred             EcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCC------------------------------------CCEEEE
Confidence            66    78999999988764 56677888999999998                                    566888


Q ss_pred             EeCCC--cEEEEecCCCCCCccccccccccEeEEE--------ECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccccc
Q 012799          335 GSDDF--TMFLWEPAVSKQPKTRMTGHQQLVNHVY--------FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP  404 (456)
Q Consensus       335 ~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~--------~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  404 (456)
                      +..++  .|++||+..+...  .+.+|...+..++        |+|||.++++++.||.+++|++  |+.+.   .+.+.
T Consensus       212 ~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~  284 (582)
T 3o4h_A          212 LETAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGN  284 (582)
T ss_dssp             EECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSE
T ss_pred             ccCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCc
Confidence            88888  8999998765433  5667777676677        9999998999999999999999  76554   34466


Q ss_pred             EEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCc
Q 012799          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST  452 (456)
Q Consensus       405 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~  452 (456)
                      +.++                           +|+ ||+++++++.+.+
T Consensus       285 v~~~---------------------------~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          285 HGRV---------------------------VLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             EEEE---------------------------EEE-TTEEEEEEEETTE
T ss_pred             eEEE---------------------------Eec-CCEEEEEEcCCCC
Confidence            7777                           889 9999998887754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=6e-24  Score=211.87  Aligned_cols=278  Identities=13%  Similarity=0.126  Sum_probs=194.3

Q ss_pred             cccccccCCcc---cEEEEEECCCCCeEEEEECC---------CcEEEEeCCCCcceeEEe---cCCCCEEEEEEcCCCC
Q 012799           99 RCSATIAGHTE---AVLSVAFSPDGRQLASGSGD---------TTVRLWDLNTQTPMFKCT---GHKNWVLCIAWSADGK  163 (456)
Q Consensus        99 ~~~~~l~~h~~---~V~~~~~s~~~~~l~~~~~d---------~~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~  163 (456)
                      ++...+.+|..   .|.+++|||||++||+++.+         +.+++||+.+++. ..+.   +|...+..++|+|||+
T Consensus        48 ~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~  126 (723)
T 1xfd_A           48 TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ  126 (723)
T ss_dssp             CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT
T ss_pred             cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC
Confidence            34455566665   49999999999999999864         7788999998875 3333   4455689999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCccccccCcccc------------------eEEEEecccccCCCCCEEEEEeCCC-----
Q 012799          164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKW------------------ITGISWEPVHLNAPCRRFVSASKDG-----  220 (456)
Q Consensus       164 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~~~~~~l~~~~~dg-----  220 (456)
                      .|++++. +.|++||+.+++... ....+...                  +.++.|+|     +|+.|++++.|+     
T Consensus       127 ~la~~~~-~~i~~~~~~~g~~~~-~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-----Dg~~la~~~~~~~~~~~  199 (723)
T 1xfd_A          127 QLIFIFE-NNIYYCAHVGKQAIR-VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-----DGTRLAYAAINDSRVPI  199 (723)
T ss_dssp             CEEEEET-TEEEEESSSSSCCEE-EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-----TSSEEEEEEEECTTSCE
T ss_pred             EEEEEEC-CeEEEEECCCCceEE-EecCCCCCceECcccceeEEEEeccCcceEEECC-----CCCEEEEEEECCCccce
Confidence            9999886 799999999887653 22322222                  37899999     999999987653     


Q ss_pred             -----------------------------cEEEEECCCCeEEEEecCc------CccEEEEEeCCCC-eEEEEeC----C
Q 012799          221 -----------------------------DARIWDVSLRKCVICLSGH------TLAVTCVKWGGDG-VIYTGSQ----D  260 (456)
Q Consensus       221 -----------------------------~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-~l~~~~~----d  260 (456)
                                                   .|++||+.+++....+..+      ...+..++|+|+| .+++...    +
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~  279 (723)
T 1xfd_A          200 MELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV  279 (723)
T ss_dssp             EEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred             EEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence                                         7999999988765566544      5679999999999 5545433    3


Q ss_pred             CcEEEEECCCCeEEEEeec-CCcce----EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE-
Q 012799          261 CTIKVWETTQGKLIRELKG-HGHWV----NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-  334 (456)
Q Consensus       261 g~i~iwd~~~~~~~~~~~~-~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  334 (456)
                      ..|++||+.+++....+.. +...+    ..++|+|+                                    ++.|+. 
T Consensus       280 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spd------------------------------------g~~l~~~  323 (723)
T 1xfd_A          280 SILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD------------------------------------GRKFFFI  323 (723)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT------------------------------------SCSEEEE
T ss_pred             EEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCC------------------------------------CCeEEEE
Confidence            5799999999887666543 23333    26788887                                    343443 


Q ss_pred             -EeCCC------cEEEEecCCCCC--CccccccccccEeE-EEECCCCCEEEEEECC---CcEEEEeCCCC--eEEEEEe
Q 012799          335 -GSDDF------TMFLWEPAVSKQ--PKTRMTGHQQLVNH-VYFSPDGQWVASASFD---KSIKLWNGTTG--KFVAVFR  399 (456)
Q Consensus       335 -~~~dg------~i~iwd~~~~~~--~~~~~~~~~~~v~~-~~~sp~~~~l~s~~~d---g~i~iwd~~~~--~~~~~~~  399 (456)
                       +..++      .|++||+.....  ....+..+...+.. ++|+|||+.|+..+.+   +.+++|++...  .....+.
T Consensus       324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~  403 (723)
T 1xfd_A          324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS  403 (723)
T ss_dssp             EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS
T ss_pred             EecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceec
Confidence             45666      577777323333  12333333334444 6999999998876655   78999987642  1233333


Q ss_pred             c---ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEe
Q 012799          400 G---HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG  447 (456)
Q Consensus       400 ~---~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~  447 (456)
                      .   |...+..+                           +|+|||++|+..
T Consensus       404 ~~~~~~~~~~~~---------------------------~~spdg~~l~~~  427 (723)
T 1xfd_A          404 CDLVENCTYFSA---------------------------SFSHSMDFFLLK  427 (723)
T ss_dssp             TTSSSSCCCCEE---------------------------EECTTSSEEEEE
T ss_pred             ccccCCCCeEEE---------------------------EECCCCCEEEEE
Confidence            2   45556666                           899999987764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=8.4e-24  Score=186.81  Aligned_cols=237  Identities=19%  Similarity=0.184  Sum_probs=180.1

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC-CcceeEEecC-CCCEEEEEEcCCCCEEEEEeC--CC--eE
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGH-KNWVLCIAWSADGKHLVSGSK--AG--EL  174 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~--dg--~i  174 (456)
                      ...+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|++++.  ++  .|
T Consensus        34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l  112 (297)
T 2ojh_A           34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAI  112 (297)
T ss_dssp             EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEE
T ss_pred             eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceE
Confidence            345567899999999999999999987 78999999998 7776666555 477899999999999999983  34  45


Q ss_pred             EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEE-EEeCCCcEEEEECCC-CeEEEEecCcCccEEEEEeCCCC
Q 012799          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV-SASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG  252 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~  252 (456)
                      ..|+..++...  .+..+ ..+..++|+|     +++.++ +++.++.+++|+++. ......+..+...+.+++|+|++
T Consensus       113 ~~~~~~~~~~~--~~~~~-~~~~~~~~sp-----dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  184 (297)
T 2ojh_A          113 YLLPSTGGTPR--LMTKN-LPSYWHGWSP-----DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG  184 (297)
T ss_dssp             EEEETTCCCCE--ECCSS-SSEEEEEECT-----TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTS
T ss_pred             EEEECCCCceE--EeecC-CCccceEECC-----CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCC
Confidence            55555555432  23333 3488899999     888877 778899999998642 33445666788899999999999


Q ss_pred             -eEEEEe-CCCcEEEEECC-CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799          253 -VIYTGS-QDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (456)
Q Consensus       253 -~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (456)
                       .+++++ .++.+++|++. .+.....+..+...+..+.|+|+                                    +
T Consensus       185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~d------------------------------------g  228 (297)
T 2ojh_A          185 RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPS------------------------------------G  228 (297)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTT------------------------------------S
T ss_pred             CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCC------------------------------------C
Confidence             566555 58999999886 45666777777888999999998                                    5


Q ss_pred             CEEEEEeCC-----------CcEEEEecCCCCCC-ccccccccccEeEEEECCCCCEEEEEECCC
Q 012799          330 ERLVSGSDD-----------FTMFLWEPAVSKQP-KTRMTGHQQLVNHVYFSPDGQWVASASFDK  382 (456)
Q Consensus       330 ~~l~~~~~d-----------g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg  382 (456)
                      +++++++.+           +.|++||+...... +....+|...+.+++|+|+|++|++++.+.
T Consensus       229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            557776655           56999997765432 223346788899999999999988887653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=2.8e-22  Score=181.06  Aligned_cols=244  Identities=14%  Similarity=0.194  Sum_probs=172.8

Q ss_pred             CCcccEEEEEECCCCCeEEEEECC-CcEEEEeCC--CCc--ceeEEecCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeC
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGD-TTVRLWDLN--TQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDP  179 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d-~~v~vwd~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~  179 (456)
                      .|...+.+++|+|+|++|++++.+ +.|.+|++.  +++  .+..+..+. .+..++|+|++++|++++. ++.|.+||+
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            467789999999999999988876 899999997  444  333444333 7899999999998877665 889999999


Q ss_pred             CCC---CCccccccCcccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCC-CeEEE----Eec-CcCccEEEEEeC
Q 012799          180 QTG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSL-RKCVI----CLS-GHTLAVTCVKWG  249 (456)
Q Consensus       180 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~----~~~-~~~~~v~~~~~~  249 (456)
                      ..+   +... .. .....+.+++|+|     +++.+++++ .++.|++||+.+ ++...    .+. .....+.+++|+
T Consensus       114 ~~~~~~~~~~-~~-~~~~~~~~~~~s~-----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (343)
T 1ri6_A          114 EDGLPVGVVD-VV-EGLDGCHSANISP-----DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH  186 (343)
T ss_dssp             ETTEEEEEEE-EE-CCCTTBCCCEECT-----TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC
T ss_pred             CCCccccccc-cc-cCCCCceEEEECC-----CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC
Confidence            533   2221 12 2334578889998     888888877 899999999987 54432    222 234578899999


Q ss_pred             CCC-eEEEEe-CCCcEEEEECCC--CeE--EEEeec---C---CcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799          250 GDG-VIYTGS-QDCTIKVWETTQ--GKL--IRELKG---H---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (456)
Q Consensus       250 ~~~-~l~~~~-~dg~i~iwd~~~--~~~--~~~~~~---~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (456)
                      |++ .+++++ .++.|.+||+..  ++.  ...+..   .   ...+..++|+|+                         
T Consensus       187 pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d-------------------------  241 (343)
T 1ri6_A          187 PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD-------------------------  241 (343)
T ss_dssp             TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT-------------------------
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC-------------------------
Confidence            999 565554 789999999953  432  222221   1   234567888887                         


Q ss_pred             HhhhhhccCCCCCEEE-EEeCCCcEEEEecCCCC---CCccccccccccEeEEEECCCCCEEEEEE-CCCcEEEE--eCC
Q 012799          318 LERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSK---QPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLW--NGT  390 (456)
Q Consensus       318 ~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iw--d~~  390 (456)
                                 +++++ ++..++.|.+||+....   .....+..+.. +..++|+|+|++|++++ .++.|.+|  |..
T Consensus       242 -----------g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~  309 (343)
T 1ri6_A          242 -----------GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGE  309 (343)
T ss_dssp             -----------SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred             -----------CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence                       44455 55579999999987322   12222333333 88999999999888877 68999999  555


Q ss_pred             CCeE
Q 012799          391 TGKF  394 (456)
Q Consensus       391 ~~~~  394 (456)
                      +++.
T Consensus       310 ~g~~  313 (343)
T 1ri6_A          310 QGLL  313 (343)
T ss_dssp             TTEE
T ss_pred             Ccee
Confidence            6654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=6.2e-24  Score=211.11  Aligned_cols=263  Identities=13%  Similarity=0.132  Sum_probs=191.7

Q ss_pred             EEEEEECCCCCeEEEEECCCcEEEEeCCCCcce-eEEecCC-----------------CCEEEEEEcCCCCEEEEEeCCC
Q 012799          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHK-----------------NWVLCIAWSADGKHLVSGSKAG  172 (456)
Q Consensus       111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~s~~~dg  172 (456)
                      +..+.|.  |+.+++++.|+ | +||+.+++.+ ..+..+.                 ..|.+++|+|| +.++.+. ++
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence            4457787  66777777888 8 9999998873 3333332                 56999999999 6666654 59


Q ss_pred             eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-----CeEEEEecCcCcc-----
Q 012799          173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----RKCVICLSGHTLA-----  242 (456)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~-----  242 (456)
                      .|++||+.+++...  +..+...+.+++|+|     +|+.++++ .++.|++||+.+     ++.......+...     
T Consensus       102 ~i~~~d~~~~~~~~--l~~~~~~~~~~~~Sp-----dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~  173 (706)
T 2z3z_A          102 GLVGFDMLARKVTY--LFDTNEETASLDFSP-----VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ  173 (706)
T ss_dssp             EEEEEETTTTEEEE--EECCTTCCTTCEECT-----TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred             EEEEEECCCCceEE--ccCCcccccCCcCCC-----CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence            99999998876542  445566788899999     99999985 679999999998     7766544443333     


Q ss_pred             ---------EEEEEeCCCC-eEEEEe---------------------------------CCCcEEEEECCCCeEEEEee-
Q 012799          243 ---------VTCVKWGGDG-VIYTGS---------------------------------QDCTIKVWETTQGKLIRELK-  278 (456)
Q Consensus       243 ---------v~~~~~~~~~-~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~-  278 (456)
                               +.++.|+|+| .|++++                                 .+..|++||+.+++...... 
T Consensus       174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~  253 (706)
T 2z3z_A          174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG  253 (706)
T ss_dssp             CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred             chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence                     4789999999 777776                                 44679999999988655443 


Q ss_pred             -cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC-----cEEEEecCCCCCC
Q 012799          279 -GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF-----TMFLWEPAVSKQP  352 (456)
Q Consensus       279 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~  352 (456)
                       .+...+..++|+|+                                    ++++++++.++     .|++||+.++...
T Consensus       254 ~~~~~~~~~~~~spd------------------------------------g~~l~~~~~~~~~~~~~v~~~d~~~g~~~  297 (706)
T 2z3z_A          254 EPKEKFLTNLSWSPD------------------------------------ENILYVAEVNRAQNECKVNAYDAETGRFV  297 (706)
T ss_dssp             SCTTCEEEEEEECTT------------------------------------SSEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred             CCCceeEeeEEEECC------------------------------------CCEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence             35667899999998                                    55677777665     8999998765332


Q ss_pred             ccccc-cccc---cEeEEEECC--CCCEEEEEECCCcEEEEeCC-CCeEEEEEecccccEEE-EEeeeeeeecCCCCcee
Q 012799          353 KTRMT-GHQQ---LVNHVYFSP--DGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQ-IRFELIYCFRYPSNFYC  424 (456)
Q Consensus       353 ~~~~~-~~~~---~v~~~~~sp--~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~-i~~~~~~~~~~~~~~~~  424 (456)
                      ..... .+..   .+..++|+|  ||++|++++.||.+++|++. +++.+..+..|...+.+ +                
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~----------------  361 (706)
T 2z3z_A          298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFA----------------  361 (706)
T ss_dssp             EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEE----------------
T ss_pred             eEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeee----------------
Confidence            22221 2222   246789999  99999999999999999876 67777778777777776 5                


Q ss_pred             eecccccccceeEecCCCeEEEeeCC
Q 012799          425 VVDMSCCMSLYSWSADSRLLLSGSKD  450 (456)
Q Consensus       425 ~~~~~~~~~~~~~s~dg~~l~s~s~D  450 (456)
                                 +|+|||+.|+.++.+
T Consensus       362 -----------~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          362 -----------GFDPKGTRLYFESTE  376 (706)
T ss_dssp             -----------EECTTSSEEEEEESS
T ss_pred             -----------EEcCCCCEEEEEecC
Confidence                       899999987766554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=4.8e-23  Score=186.66  Aligned_cols=271  Identities=12%  Similarity=0.055  Sum_probs=189.4

Q ss_pred             EEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCC-CCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCcccccc
Q 012799          113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLS  190 (456)
Q Consensus       113 ~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~  190 (456)
                      .++++++++++++++.++.|++||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++.......
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45788899999999999999999999998887776443 2578999999998665 455689999999998876543222


Q ss_pred             Cc-----ccceEEEEecccccCCCCCEEEEEeCC------------CcEEEEECCCCe---EEEEecCcCccEEEEEeCC
Q 012799          191 GH-----KKWITGISWEPVHLNAPCRRFVSASKD------------GDARIWDVSLRK---CVICLSGHTLAVTCVKWGG  250 (456)
Q Consensus       191 ~~-----~~~v~~~~~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~  250 (456)
                      .+     ...+..++|+|     +++++++++.+            +.|.+||+.+++   .+..+. +...+.+++|+|
T Consensus        84 ~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~  157 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISP-----DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD  157 (349)
T ss_dssp             CCSTTEEEECSSCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT
T ss_pred             ccccccccccccceEECC-----CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECC
Confidence            22     23467888988     99999998865            899999998743   233333 334688899999


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeEEEEeecCCc------------------------ceEEEEecCcceeeeccccCCCCc
Q 012799          251 DGVIYTGSQDCTIKVWETTQGKLIRELKGHGH------------------------WVNSLALSTEYALRTGAFDHTGKQ  306 (456)
Q Consensus       251 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------~i~~~~~~~~~~~~~~~~~~~~~~  306 (456)
                      ++.+++++  +.|.+||+.+++.+..+.....                        ....++++++.......       
T Consensus       158 dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------  228 (349)
T 1jmx_B          158 DGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT-------  228 (349)
T ss_dssp             TSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC-------
T ss_pred             CCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc-------
Confidence            99655543  3499999999988777653320                        11122222211000000       


Q ss_pred             cCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC-CCCEEEEEECCCcEE
Q 012799          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIK  385 (456)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~  385 (456)
                                        ......++.....++.+.+|++          ..+...+..++|+| +|++++++  ++.|.
T Consensus       229 ------------------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~  278 (349)
T 1jmx_B          229 ------------------ADLLYGYLSVDLKTGKTHTQEF----------ADLTELYFTGLRSPKDPNQIYGV--LNRLA  278 (349)
T ss_dssp             ------------------CEEEEEEEEEETTTCCEEEEEE----------EECSSCEEEEEECSSCTTEEEEE--ESEEE
T ss_pred             ------------------cccceeEEEEeccCCcEEeccc----------ccCCCcceeeEecCCCCCEEEEE--cCeEE
Confidence                              0000011223344555666653          22455688999999 99999888  88999


Q ss_pred             EEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       386 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +||+.+++.+..+... ..+.++                           +|+|||++|++++.++.|++|
T Consensus       279 ~~d~~~~~~~~~~~~~-~~~~~~---------------------------~~s~dg~~l~~~~~~~~v~v~  321 (349)
T 1jmx_B          279 KYDLKQRKLIKAANLD-HTYYCV---------------------------AFDKKGDKLYLGGTFNDLAVF  321 (349)
T ss_dssp             EEETTTTEEEEEEECS-SCCCEE---------------------------EECSSSSCEEEESBSSEEEEE
T ss_pred             EEECccCeEEEEEcCC-CCccce---------------------------EECCCCCEEEEecCCCeEEEE
Confidence            9999999988877643 335566                           899999999998899999987

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=3.6e-22  Score=185.26  Aligned_cols=181  Identities=18%  Similarity=0.167  Sum_probs=145.2

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC----------ccee-----EEecCCCCEEEEEEcCCCCEEE----E
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----------TPMF-----KCTGHKNWVLCIAWSADGKHLV----S  167 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~----------~~~~-----~~~~~~~~v~~~~~~~~~~~l~----s  167 (456)
                      +...++.+++++++.++++++.|+ +++|+....          ....     ....+...|.+++|+|++++|+    +
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            345689999999999999999887 899875311          0111     1123567899999999999999    7


Q ss_pred             EeCCCeEEEEeCCCC-----CCc-----cccccCcccceEEEEecccccCCC-CCEEEEEeCCCcEEEEECCCCeEEEEe
Q 012799          168 GSKAGELQCWDPQTG-----KPS-----GNPLSGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSLRKCVICL  236 (456)
Q Consensus       168 ~~~dg~i~vwd~~~~-----~~~-----~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~  236 (456)
                      |+.|+.|++||++++     +..     ...+.+|...|.+++|+|     + +.+|++++.||.|++||++++......
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p-----~~~~~las~s~Dg~v~iwD~~~~~~~~~~  188 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNP-----TVPSMVAVCLADGSIAVLQVTETVKVCAT  188 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECS-----SCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECC-----CCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence            888999999998764     111     234567999999999999     5 789999999999999999999877777


Q ss_pred             cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC-------CcceEEEEecCcce
Q 012799          237 SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGH-------GHWVNSLALSTEYA  294 (456)
Q Consensus       237 ~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~  294 (456)
                      .+|...|.+++|+|+| +|++|+.||.|++||.+ ++....+..+       ...+.++.|+++..
T Consensus       189 ~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~  253 (434)
T 2oit_A          189 LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV  253 (434)
T ss_dssp             ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred             cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence            7889999999999999 99999999999999998 5555555433       23788999988743

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=1e-21  Score=177.86  Aligned_cols=259  Identities=11%  Similarity=0.085  Sum_probs=176.2

Q ss_pred             CCcEEEEeCC--CCccee-EEecCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCCcc-ccccCcccceEEEEe
Q 012799          129 DTTVRLWDLN--TQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSG-NPLSGHKKWITGISW  201 (456)
Q Consensus       129 d~~v~vwd~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~  201 (456)
                      ++.|.+|+++  +++... ....+...+..++|+|+|+ |++++.   ++.|.+|++.+++... .....+...+..++|
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~   93 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV   93 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence            4567777664  444332 2334567788899999999 555544   6899999997765321 122345667889999


Q ss_pred             cccccCCCCCEEEEEe-CCCcEEEEECCC-C--eEEEEecC---------cCccEEEEEeCCCC-eEEEEeCCCcEEEEE
Q 012799          202 EPVHLNAPCRRFVSAS-KDGDARIWDVSL-R--KCVICLSG---------HTLAVTCVKWGGDG-VIYTGSQDCTIKVWE  267 (456)
Q Consensus       202 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~--~~~~~~~~---------~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd  267 (456)
                      +|     +++++++++ .++.|.+|++.. +  +.+..+..         ....+.+++|+|+| .+++...++.|.+||
T Consensus        94 sp-----dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~  168 (347)
T 3hfq_A           94 DE-----ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN  168 (347)
T ss_dssp             ET-----TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred             CC-----CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence            99     999888887 679999999962 2  33333321         12348899999999 555556688999999


Q ss_pred             CC-CCeEEE--Eeec-CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE-EEEEeCCCcEE
Q 012799          268 TT-QGKLIR--ELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDDFTMF  342 (456)
Q Consensus       268 ~~-~~~~~~--~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~  342 (456)
                      +. +++...  .+.. .......++|+|+                                    +++ ++++..++.+.
T Consensus       169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spd------------------------------------g~~l~v~~~~~~~v~  212 (347)
T 3hfq_A          169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPD------------------------------------GQYAFLAGELSSQIA  212 (347)
T ss_dssp             ECTTSCEEEEEEEECCTTCCEEEEEECTT------------------------------------SSEEEEEETTTTEEE
T ss_pred             ECCCCcEEEeeeEEcCCCCCCceEEECCC------------------------------------CCEEEEEeCCCCEEE
Confidence            98 554332  2222 2335677899988                                    443 44466788999


Q ss_pred             EEecCCCCCC---ccccccc------cccEeEEEECCCCCEE-EEEECCCcEEEEeCCC---CeEEEEEecccccEEEEE
Q 012799          343 LWEPAVSKQP---KTRMTGH------QQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTT---GKFVAVFRGHVGPVYQIR  409 (456)
Q Consensus       343 iwd~~~~~~~---~~~~~~~------~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~i~  409 (456)
                      +|++......   .......      ...+..++|+|||++| ++...++.|.+|++..   .+.+..+..+...+..+ 
T Consensus       213 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~-  291 (347)
T 3hfq_A          213 SLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDF-  291 (347)
T ss_dssp             EEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEE-
T ss_pred             EEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeE-
Confidence            9997642211   1111111      1458899999999987 5566789999999873   24555566555556677 


Q ss_pred             eeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCC-CceEEC
Q 012799          410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-STLKVT  456 (456)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D-g~v~iW  456 (456)
                                                +|+|||++|++++.+ +.|.+|
T Consensus       292 --------------------------~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          292 --------------------------DLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             --------------------------EECTTSSEEEEEETTTTEEEEE
T ss_pred             --------------------------EECCCCCEEEEEEcCCCcEEEE
Confidence                                      899999998888764 888887

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=8.9e-22  Score=176.97  Aligned_cols=250  Identities=10%  Similarity=0.089  Sum_probs=177.6

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEEC-CCcEEEEeCCCCcc-eeEEecCCCCEEEEEEcCCCCEEEEEeCCC---eE
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTP-MFKCTGHKNWVLCIAWSADGKHLVSGSKAG---EL  174 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~-d~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i  174 (456)
                      ....+..+...+ +++|+|+|+++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++   .|
T Consensus        32 ~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i  110 (331)
T 3u4y_A           32 ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNM  110 (331)
T ss_dssp             EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEE
T ss_pred             eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccE
Confidence            334445556667 9999999997776665 88999999999887 777776766666699999999999655553   89


Q ss_pred             EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEE-eCCCc-EEEEECCCCeEE----EEecCcCccEEEEEe
Q 012799          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-SKDGD-ARIWDVSLRKCV----ICLSGHTLAVTCVKW  248 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~-i~iwd~~~~~~~----~~~~~~~~~v~~~~~  248 (456)
                      .+||+.+++.... + .......+++|+|     +|++++++ ..++. |.+|++.....+    ............++|
T Consensus       111 ~v~d~~~~~~~~~-~-~~~~~~~~~~~sp-----dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  183 (331)
T 3u4y_A          111 QSYSFLKNKFIST-I-PIPYDAVGIAISP-----NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITF  183 (331)
T ss_dssp             EEEETTTTEEEEE-E-ECCTTEEEEEECT-----TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEE
T ss_pred             EEEECCCCCeEEE-E-ECCCCccceEECC-----CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEE
Confidence            9999998876542 2 2334568999999     88755554 55688 999998754332    112233456899999


Q ss_pred             CCCC-eEEEE-eCCCcEEEEECCCCeE---EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799          249 GGDG-VIYTG-SQDCTIKVWETTQGKL---IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (456)
Q Consensus       249 ~~~~-~l~~~-~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (456)
                      +|+| .++++ ..++.|.+||+.+++.   +..+.. ...+..++++|+                               
T Consensus       184 spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spd-------------------------------  231 (331)
T 3u4y_A          184 TPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRD-------------------------------  231 (331)
T ss_dssp             CTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTT-------------------------------
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCC-------------------------------
Confidence            9999 45554 4688999999998887   777764 456778899988                               


Q ss_pred             ccCCCCCEEEE-EeCCCcEEEEecCCCCCC-ccccc-------cccccEeEEEECCCCCEEEEEEC-CCcEEEEeCCCCe
Q 012799          324 IKGNAPERLVS-GSDDFTMFLWEPAVSKQP-KTRMT-------GHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGK  393 (456)
Q Consensus       324 ~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~-~~~~~-------~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~  393 (456)
                           ++++++ ...++.|.+||+.+.... ...+.       ........++|+|+|++|++++. ++.|.+||+....
T Consensus       232 -----g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          232 -----GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             -----SSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             -----CCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence                 444544 445788999997664420 11111       11122356899999998866554 5699999997654


Q ss_pred             E
Q 012799          394 F  394 (456)
Q Consensus       394 ~  394 (456)
                      .
T Consensus       307 ~  307 (331)
T 3u4y_A          307 V  307 (331)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=1.3e-22  Score=202.05  Aligned_cols=268  Identities=12%  Similarity=0.082  Sum_probs=190.9

Q ss_pred             EEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCC---CEEEEEEcCCCCEEEEEeC---------CCeEEEEeCC
Q 012799          113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSADGKHLVSGSK---------AGELQCWDPQ  180 (456)
Q Consensus       113 ~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~---------dg~i~vwd~~  180 (456)
                      +++|+|||+++++ +.|++|++||+.+++....+.+|..   .+.+++|+|||++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6899999975555 4699999999999987776665543   4899999999999998876         7899999999


Q ss_pred             CCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCcCccE---------------
Q 012799          181 TGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAV---------------  243 (456)
Q Consensus       181 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v---------------  243 (456)
                      +++... ..+   ...+..++|+|     +|+.|+++. ++.|++||+.+++..... .++...+               
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SP-----DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~  169 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSP-----VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLA  169 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECS-----STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTC
T ss_pred             CCccccceec---CcccccceECC-----CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeeccc
Confidence            887621 012   24588899999     999999886 689999999888765433 2232222               


Q ss_pred             --EEEEeCCCC-eEEEEeCCC----------------------------------cEEEEECCCCeEE---E-----Eee
Q 012799          244 --TCVKWGGDG-VIYTGSQDC----------------------------------TIKVWETTQGKLI---R-----ELK  278 (456)
Q Consensus       244 --~~~~~~~~~-~l~~~~~dg----------------------------------~i~iwd~~~~~~~---~-----~~~  278 (456)
                        .+++|+||| .|++++.|.                                  .|++||+.+++..   .     .+.
T Consensus       170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~  249 (719)
T 1z68_A          170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA  249 (719)
T ss_dssp             SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred             CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC
Confidence              489999999 777776542                                  7889999887642   1     123


Q ss_pred             cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC----CcEEEEe----cCCCC
Q 012799          279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD----FTMFLWE----PAVSK  350 (456)
Q Consensus       279 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~  350 (456)
                      .+...+..++|+|++                                    ..+++....    ..|.+||    +.++.
T Consensus       250 ~~~~~~~~~~~SpD~------------------------------------~~~~~~~~~~~~~~~l~~~d~~~~~~~g~  293 (719)
T 1z68_A          250 SSDYYFSWLTWVTDE------------------------------------RVCLQWLKRVQNVSVLSICDFREDWQTWD  293 (719)
T ss_dssp             TSCEEEEEEEESSSS------------------------------------EEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred             CCcceEEEeEEeCCC------------------------------------eEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence            577788999999984                                    335553332    2488888    65544


Q ss_pred             CCcccc----ccccccEe-----EEEECCCCCEEEE--EECCC--cEEEEeCCCCeEEEEEecccccEEEEEeeeeeeec
Q 012799          351 QPKTRM----TGHQQLVN-----HVYFSPDGQWVAS--ASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (456)
Q Consensus       351 ~~~~~~----~~~~~~v~-----~~~~sp~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  417 (456)
                      . ....    .+|...+.     .++|+|||+.|+.  +..+|  .|.+||+.+++ ...+..+...+..+         
T Consensus       294 ~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~---------  362 (719)
T 1z68_A          294 C-PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINI---------  362 (719)
T ss_dssp             C-CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEE---------
T ss_pred             e-EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEE---------
Confidence            3 2333    46666666     8899999996554  44555  57777887766 44555555567666         


Q ss_pred             CCCCceeeecccccccceeEecCCCeEEEeeCC-----CceEEC
Q 012799          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-----STLKVT  456 (456)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D-----g~v~iW  456 (456)
                                        .++ +++.|+..+.+     +..++|
T Consensus       363 ------------------~~~-d~~~i~~~~~~~~~~~~~~~l~  387 (719)
T 1z68_A          363 ------------------FRV-TQDSLFYSSNEFEEYPGRRNIY  387 (719)
T ss_dssp             ------------------EEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred             ------------------EEE-eCCEEEEEEecCCCCCceEEEE
Confidence                              556 77777666654     677766

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.89  E-value=5.7e-22  Score=182.42  Aligned_cols=288  Identities=15%  Similarity=0.097  Sum_probs=192.6

Q ss_pred             ccccccccCCcccEEE-----EEECCCCCeEEEEEC-CC--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe
Q 012799           98 NRCSATIAGHTEAVLS-----VAFSPDGRQLASGSG-DT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS  169 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~-----~~~s~~~~~l~~~~~-d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  169 (456)
                      +.....|..|......     .+|+|||++|+.++. ++  .|.+||+.+++......++...+..+.|+|||+.|+.++
T Consensus        20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~   99 (388)
T 3pe7_A           20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK   99 (388)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred             CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence            3445667777766666     899999999999887 66  488889988887666666666666788999999999999


Q ss_pred             CCCeEEEEeCCCCCCccccccCcccceEEEEe--cccccCCCCCEEEEE----------------------eCCCcEEEE
Q 012799          170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISW--EPVHLNAPCRRFVSA----------------------SKDGDARIW  225 (456)
Q Consensus       170 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~l~~~----------------------~~dg~i~iw  225 (456)
                      .++.|.+||+.+++... ....+...+....|  +|     ++..++..                      ..++.|++|
T Consensus       100 ~~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~~~~~-----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (388)
T 3pe7_A          100 DGRNLMRVDLATLEENV-VYQVPAEWVGYGTWVANS-----DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV  173 (388)
T ss_dssp             TTTEEEEEETTTCCEEE-EEECCTTEEEEEEEEECT-----TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred             CCCeEEEEECCCCccee-eeechhhcccccceeECC-----CCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence            99999999999887543 33334444433433  45     77777642                      244789999


Q ss_pred             ECCCCeEEEEecCcCccEEEEEeCC-CC-eEEEEeCC------CcEEEEECCCCeEEEEeecCC-cceEEEEecCcceee
Q 012799          226 DVSLRKCVICLSGHTLAVTCVKWGG-DG-VIYTGSQD------CTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALR  296 (456)
Q Consensus       226 d~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~  296 (456)
                      |+.+++... +..+...+..++|+| +| .++.+..+      ..|.++|...++......... ..+..+.|+|++   
T Consensus       174 d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg---  249 (388)
T 3pe7_A          174 DLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDG---  249 (388)
T ss_dssp             ETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTS---
T ss_pred             ECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCC---
Confidence            999886544 334667789999999 88 66655543      378888887655433333222 357788899984   


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe-CCC----cEEEEecCCCCCC-cccccccccc---EeEEE
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDF----TMFLWEPAVSKQP-KTRMTGHQQL---VNHVY  367 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg----~i~iwd~~~~~~~-~~~~~~~~~~---v~~~~  367 (456)
                                                       +.|+..+ .++    .|++||+..+... +....++...   ...++
T Consensus       250 ---------------------------------~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~  296 (388)
T 3pe7_A          250 ---------------------------------SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL  296 (388)
T ss_dssp             ---------------------------------SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred             ---------------------------------CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence                                             4354333 222    3999998765432 1122221110   11237


Q ss_pred             ECCCCCEEEEE---------ECCCcEEEEeCCCCeEEEEEecccc-----------cEEEEEeeeeeeecCCCCceeeec
Q 012799          368 FSPDGQWVASA---------SFDKSIKLWNGTTGKFVAVFRGHVG-----------PVYQIRFELIYCFRYPSNFYCVVD  427 (456)
Q Consensus       368 ~sp~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~i~~~~~~~~~~~~~~~~~~~  427 (456)
                      |+|||+.|+..         ..+..|++||+.+++.. .+..+..           .+..+                   
T Consensus       297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~-------------------  356 (388)
T 3pe7_A          297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHP-------------------  356 (388)
T ss_dssp             EEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCC-------------------
T ss_pred             EccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCc-------------------
Confidence            99999987754         45668999999887753 3443433           23333                   


Q ss_pred             ccccccceeEecCCCeEEEee-CCCceEEC
Q 012799          428 MSCCMSLYSWSADSRLLLSGS-KDSTLKVT  456 (456)
Q Consensus       428 ~~~~~~~~~~s~dg~~l~s~s-~Dg~v~iW  456 (456)
                              +|+|||+.|+.++ .+|...||
T Consensus       357 --------~~spDg~~l~~~s~~~g~~~l~  378 (388)
T 3pe7_A          357 --------SFTPDDKQILFTSDVHGKPALY  378 (388)
T ss_dssp             --------EECTTSSEEEEEECTTSSCEEE
T ss_pred             --------cCCCCCCEEEEEecCCCceeEE
Confidence                    8999999888665 47776665

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=3.5e-21  Score=174.31  Aligned_cols=249  Identities=15%  Similarity=0.165  Sum_probs=173.8

Q ss_pred             CCcccEEEEEECCCCCeEEEEEC---CCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeC
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDP  179 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~---d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~  179 (456)
                      .+...+..++|+|||+ |++++.   ++.|++|++.+++  .+..+..+...+..++|+|+|++|++++ .++.|.+|++
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            4556778899999999 555543   6899999997665  3444455778899999999999998888 6799999999


Q ss_pred             CC-CCCc--ccccc--------CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC-CCeEEE--EecC-cCccEE
Q 012799          180 QT-GKPS--GNPLS--------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVI--CLSG-HTLAVT  244 (456)
Q Consensus       180 ~~-~~~~--~~~~~--------~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~--~~~~-~~~~v~  244 (456)
                      .. +...  .....        .+...+.+++|+|     +++.+++...++.|++|++. +++...  .+.. ....+.
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-----dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~  190 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-----DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR  190 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-----TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECC-----CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence            63 2211  10000        0123478899999     88866666678899999998 454322  2222 234678


Q ss_pred             EEEeCCCC-eEEE-EeCCCcEEEEECCC--CeE--EEEeecCC------cceEEEEecCcceeeeccccCCCCccCChHH
Q 012799          245 CVKWGGDG-VIYT-GSQDCTIKVWETTQ--GKL--IRELKGHG------HWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (456)
Q Consensus       245 ~~~~~~~~-~l~~-~~~dg~i~iwd~~~--~~~--~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (456)
                      .++|+|+| .+++ +..++.|.+|++..  ++.  +..+....      ..+..++|+|+                    
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd--------------------  250 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD--------------------  250 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT--------------------
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC--------------------
Confidence            89999999 4555 45688999999874  543  22332222      34778999988                    


Q ss_pred             HHHHHHhhhhhccCCCCCEE-EEEeCCCcEEEEecCCCC--CCccccccccccEeEEEECCCCCEEEEEECC-CcEEEE-
Q 012799          313 MKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAVSK--QPKTRMTGHQQLVNHVYFSPDGQWVASASFD-KSIKLW-  387 (456)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-g~i~iw-  387 (456)
                                      ++++ ++...++.|.+|++....  .....+..+...+..++|+|||++|++++.+ +.|.+| 
T Consensus       251 ----------------G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~  314 (347)
T 3hfq_A          251 ----------------GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA  314 (347)
T ss_dssp             ----------------SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ----------------CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence                            4445 566678999999986332  2223334455568899999999998888765 899999 


Q ss_pred             -eCCCCeEEE
Q 012799          388 -NGTTGKFVA  396 (456)
Q Consensus       388 -d~~~~~~~~  396 (456)
                       |..+|++..
T Consensus       315 ~d~~tg~l~~  324 (347)
T 3hfq_A          315 RDLTSGKLSL  324 (347)
T ss_dssp             ECTTTCCEEE
T ss_pred             EeCCCCeEEe
Confidence             666777653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=2.1e-21  Score=174.83  Aligned_cols=242  Identities=14%  Similarity=0.091  Sum_probs=181.1

Q ss_pred             cEEEEEECCCCCeEE-EEECCCcEEEEeCCCCcceeEEec-C----CCCEEEEEEcCCCCEEEEEe------------CC
Q 012799          110 AVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTG-H----KNWVLCIAWSADGKHLVSGS------------KA  171 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~-~----~~~v~~~~~~~~~~~l~s~~------------~d  171 (456)
                      .+.+++|+|+|++++ ++..++.|.+||+.+++.+..+.. +    ...+..++|+|+|+++++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            478899999998765 455678999999999888776653 2    22577899999999999886            57


Q ss_pred             CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC--ccEEEEEeC
Q 012799          172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT--LAVTCVKWG  249 (456)
Q Consensus       172 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~  249 (456)
                      +.|.+||+.+++.... +. ....+.+++|+|     ++++++++  ++.|++||+.+++....+..+.  .+   +.|+
T Consensus       115 ~~i~v~d~~~~~~~~~-~~-~~~~~~~~~~s~-----dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~s  182 (337)
T 1pby_B          115 TRVALYDAETLSRRKA-FE-APRQITMLAWAR-----DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE---TYAQ  182 (337)
T ss_dssp             CEEEEEETTTTEEEEE-EE-CCSSCCCEEECT-----TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT---TBCC
T ss_pred             ceEEEEECCCCcEEEE-Ee-CCCCcceeEECC-----CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC---ceeC
Confidence            9999999988775542 22 234577888988     88888887  6899999999999887775443  32   3678


Q ss_pred             CCC-eEEEEeC-CC-----------------------cEEEEECCCCeEE-EEeecCCcceEEEEecCcceeeeccccCC
Q 012799          250 GDG-VIYTGSQ-DC-----------------------TIKVWETTQGKLI-RELKGHGHWVNSLALSTEYALRTGAFDHT  303 (456)
Q Consensus       250 ~~~-~l~~~~~-dg-----------------------~i~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  303 (456)
                      |++ .++..+. ++                       .|.+||+.+++.. ..+..+...+..++++|+           
T Consensus       183 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d-----------  251 (337)
T 1pby_B          183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA-----------  251 (337)
T ss_dssp             CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTT-----------
T ss_pred             CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCC-----------
Confidence            887 4443332 22                       4689999998764 223345556778999988           


Q ss_pred             CCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCc
Q 012799          304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS  383 (456)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~  383 (456)
                                               +.+++++  ++.|.+||+.+.+. ...+. ....+.+++|+|+|++|++++.++.
T Consensus       252 -------------------------g~~l~~~--~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~  302 (337)
T 1pby_B          252 -------------------------KTRAFGA--YNVLESFDLEKNAS-IKRVP-LPHSYYSVNVSTDGSTVWLGGALGD  302 (337)
T ss_dssp             -------------------------SSEEEEE--ESEEEEEETTTTEE-EEEEE-CSSCCCEEEECTTSCEEEEESBSSE
T ss_pred             -------------------------CCEEEEe--CCeEEEEECCCCcC-cceec-CCCceeeEEECCCCCEEEEEcCCCc
Confidence                                     5557776  79999999765432 22222 2345789999999999999889999


Q ss_pred             EEEEeCCCCeEEEEEecccc
Q 012799          384 IKLWNGTTGKFVAVFRGHVG  403 (456)
Q Consensus       384 i~iwd~~~~~~~~~~~~~~~  403 (456)
                      |++||+.+++.+..+..+..
T Consensus       303 i~v~d~~~~~~~~~~~~~~~  322 (337)
T 1pby_B          303 LAAYDAETLEKKGQVDLPGN  322 (337)
T ss_dssp             EEEEETTTCCEEEEEECGGG
T ss_pred             EEEEECcCCcEEEEEEcCCC
Confidence            99999999999888876544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=5.8e-20  Score=167.21  Aligned_cols=258  Identities=11%  Similarity=0.112  Sum_probs=176.9

Q ss_pred             CcccEEEEEECCCCCeEEEEECC----CcEEEEeCCC--Cc--ceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEE
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGD----TTVRLWDLNT--QT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCW  177 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d----~~v~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vw  177 (456)
                      |...+..++|+|||++|++++.+    +.|.+|+++.  ++  .+.....+......+++  ++++|++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            66777889999999999999876    7999998865  33  23334445667788888  888777776 57899999


Q ss_pred             eCCCCCCccccc-------------cCcccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCe-------E----
Q 012799          178 DPQTGKPSGNPL-------------SGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRK-------C----  232 (456)
Q Consensus       178 d~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~-------~----  232 (456)
                      ++..........             ..+...+.+++|+|     +++++++++ .++.|++|++....       .    
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~  200 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-----DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG  200 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-----CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence            997654332111             11223457899999     898776655 47899999887543       1    


Q ss_pred             --EEEecCcCccEEEEEeCCCC-eEEEEe-CCCcEEEEECCCCeE--EEEee---cCCcceEEEEecCcceeeeccccCC
Q 012799          233 --VICLSGHTLAVTCVKWGGDG-VIYTGS-QDCTIKVWETTQGKL--IRELK---GHGHWVNSLALSTEYALRTGAFDHT  303 (456)
Q Consensus       233 --~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~--~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~  303 (456)
                        .............++|+|+| .+++++ .++.|.+||+.+++.  +..+.   .+......++|+|+           
T Consensus       201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spd-----------  269 (361)
T 3scy_A          201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPD-----------  269 (361)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTT-----------
T ss_pred             cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCC-----------
Confidence              12223345567899999999 666666 689999999987754  22232   22344678899988           


Q ss_pred             CCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC--CCcEEEEecCCC-CC--CccccccccccEeEEEECCCCCEEEEE
Q 012799          304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--DFTMFLWEPAVS-KQ--PKTRMTGHQQLVNHVYFSPDGQWVASA  378 (456)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~-~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~  378 (456)
                                               +++++++..  ++.|.+|++... ..  ....+.. ...+..++|+|+|++|+++
T Consensus       270 -------------------------g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~  323 (361)
T 3scy_A          270 -------------------------GKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVA  323 (361)
T ss_dssp             -------------------------SSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEE
T ss_pred             -------------------------CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEE
Confidence                                     555766554  589999998632 22  1222222 4567899999999998888


Q ss_pred             E-CCCcEEEE--eCCCCeEEEEE-ecccccEEEE
Q 012799          379 S-FDKSIKLW--NGTTGKFVAVF-RGHVGPVYQI  408 (456)
Q Consensus       379 ~-~dg~i~iw--d~~~~~~~~~~-~~~~~~v~~i  408 (456)
                      + .++.|.+|  |..+|++.... ..+...+.++
T Consensus       324 ~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v  357 (361)
T 3scy_A          324 CRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCL  357 (361)
T ss_dssp             ETTTTEEEEEEECTTTCCEEECSCCEECSSEEEE
T ss_pred             ECCCCCEEEEEEECCCCcEeecceeeeCCCCeEE
Confidence            7 67899995  55677765443 2244466777

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=8.7e-21  Score=172.06  Aligned_cols=236  Identities=13%  Similarity=0.093  Sum_probs=180.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEE-EeCCC
Q 012799          149 HKNWVLCIAWSADGKHLVSGSK-------AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS-ASKDG  220 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~-~~~dg  220 (456)
                      ....+..++|+|+++++++++.       ++.|.+||..+++......  ....+..++|+|     +++.+++ ...++
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~-----dg~~l~v~~~~~~  111 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINN-----TTQTLWFGNTVNS  111 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEET-----TTTEEEEEETTTT
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECC-----CCCEEEEEecCCC
Confidence            4456889999999999888774       5689999999887654322  234467888888     8885554 45579


Q ss_pred             cEEEEECCCCeEEEEecCcCc---------cEEEEEeCCCC-eEEEEe--CCCcEEEEECCCCeEEEEeecCCcceEEEE
Q 012799          221 DARIWDVSLRKCVICLSGHTL---------AVTCVKWGGDG-VIYTGS--QDCTIKVWETTQGKLIRELKGHGHWVNSLA  288 (456)
Q Consensus       221 ~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  288 (456)
                      .|.+||..+++.+..+..+..         .+.+++|+|++ .+++++  .++.|.+||..+++.+..+..+...+..++
T Consensus       112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  191 (353)
T 3vgz_A          112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA  191 (353)
T ss_dssp             EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred             EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence            999999999998877765432         27889999998 566655  478899999999999888875666678888


Q ss_pred             ecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc---cccccEeE
Q 012799          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT---GHQQLVNH  365 (456)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~  365 (456)
                      ++|+                                    ++++++++.++.|.+||+.+.........   ++...+..
T Consensus       192 ~s~d------------------------------------g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  235 (353)
T 3vgz_A          192 LDSE------------------------------------GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFIN  235 (353)
T ss_dssp             EETT------------------------------------TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEE
T ss_pred             ECCC------------------------------------CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccce
Confidence            8887                                    56688888999999999776543222111   34556888


Q ss_pred             EEECCCCCEEEEEEC-CCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeE
Q 012799          366 VYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL  444 (456)
Q Consensus       366 ~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  444 (456)
                      ++|+|+|+++++++. ++.|.+||..+++.+..+.....  ..+                           +|+|+|+++
T Consensus       236 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~---------------------------~~s~dg~~l  286 (353)
T 3vgz_A          236 ISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAV---------------------------LFNPARNEA  286 (353)
T ss_dssp             EEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCE---------------------------EEETTTTEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceE---------------------------EECCCCCEE
Confidence            999999998776665 48999999999998877764332  334                           889999966


Q ss_pred             EEee-CCCceEEC
Q 012799          445 LSGS-KDSTLKVT  456 (456)
Q Consensus       445 ~s~s-~Dg~v~iW  456 (456)
                      +.++ .++.|.+|
T Consensus       287 ~v~~~~~~~v~~~  299 (353)
T 3vgz_A          287 YVTHRQAGKVSVI  299 (353)
T ss_dssp             EEEETTTTEEEEE
T ss_pred             EEEECCCCeEEEE
Confidence            5555 68999886

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=1.1e-21  Score=190.25  Aligned_cols=236  Identities=11%  Similarity=0.103  Sum_probs=170.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCCccccccCcc-cceEEEEecccccCCCCCEEEEEeC---CCcEEE
Q 012799          150 KNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASK---DGDARI  224 (456)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~l~~~~~---dg~i~i  224 (456)
                      ..+|.+++|+|||+.||+++. ||+++||++.+++...  +..+. ..+..+.|+|     + +.+++++.   +....+
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~--lt~~~~~~~~~~~~sp-----d-~~l~~~~~~~g~~~~~l   92 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK--LNREPINSVLDPHYGV-----G-RVILVRDVSKGAEQHAL   92 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE--CCSSCCSEECEECTTC-----S-EEEEEEECSTTSCCEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe--eecccccccccccCCC-----C-eEEEEeccCCCCcceEE
Confidence            567999999999999999887 9999999986665432  33444 6899999998     6 66776664   455566


Q ss_pred             EECCC---CeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecc
Q 012799          225 WDVSL---RKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (456)
Q Consensus       225 wd~~~---~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  299 (456)
                      |.+..   +... .+.... .+...+|+|++  .+++.+.++.+.+||+.+++.......+.   .+++++|+       
T Consensus        93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spD-------  160 (582)
T 3o4h_A           93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIR-------  160 (582)
T ss_dssp             EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEE-------
T ss_pred             EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCC-------
Confidence            55432   2222 333222 23345666655  55555566666699999987665554333   78889998       


Q ss_pred             ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC----CcEEEEecCCCCCCccccccccccEeEEEECCCCCEE
Q 012799          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD----FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV  375 (456)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  375 (456)
                                                   ++++++++.+    +.|++||+..+..  ..+..|...+..++|||||++|
T Consensus       161 -----------------------------G~~la~~~~~~~~~~~i~~~d~~~g~~--~~l~~~~~~~~~~~~SpDG~~l  209 (582)
T 3o4h_A          161 -----------------------------GDLIAGLGFFGGGRVSLFTSNLSSGGL--RVFDSGEGSFSSASISPGMKVT  209 (582)
T ss_dssp             -----------------------------TTEEEEEEEEETTEEEEEEEETTTCCC--EEECCSSCEEEEEEECTTSCEE
T ss_pred             -----------------------------CCEEEEEEEcCCCCeEEEEEcCCCCCc--eEeecCCCccccceECCCCCEE
Confidence                                         6668877776    7899999776543  3567788889999999999999


Q ss_pred             EEEECCC--cEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799          376 ASASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL  453 (456)
Q Consensus       376 ~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v  453 (456)
                      +++..+|  .|++||+.+++.. .+.+|...+..+.                   .......+|+|||.++++++.||++
T Consensus       210 ~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~-------------------~~~~~~~~~spdg~~~~~~~~~g~~  269 (582)
T 3o4h_A          210 AGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR-------------------PTAITWLGYLPDGRLAVVARREGRS  269 (582)
T ss_dssp             EEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC-------------------CSEEEEEEECTTSCEEEEEEETTEE
T ss_pred             EEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh-------------------hccccceeEcCCCcEEEEEEcCCcE
Confidence            9888898  8999999998887 7777766555540                   0000000399999999999999999


Q ss_pred             EEC
Q 012799          454 KVT  456 (456)
Q Consensus       454 ~iW  456 (456)
                      +||
T Consensus       270 ~l~  272 (582)
T 3o4h_A          270 AVF  272 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=1.3e-20  Score=174.75  Aligned_cols=212  Identities=17%  Similarity=0.110  Sum_probs=160.9

Q ss_pred             CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--------cc------ccccCcccc
Q 012799          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--------SG------NPLSGHKKW  195 (456)
Q Consensus       130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------~~------~~~~~~~~~  195 (456)
                      +.+++|+....       .....+..+++++++.++++++.++ +++|+......        ..      .....+...
T Consensus        23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            46888864311       1234678999999999999999887 88886432100        00      011234567


Q ss_pred             eEEEEecccccCCCCCEEE----EEeCCCcEEEEECCCC--------e---EEEEecCcCccEEEEEeCCC-C-eEEEEe
Q 012799          196 ITGISWEPVHLNAPCRRFV----SASKDGDARIWDVSLR--------K---CVICLSGHTLAVTCVKWGGD-G-VIYTGS  258 (456)
Q Consensus       196 v~~~~~~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~-~l~~~~  258 (456)
                      |.+++|+|     ++++|+    +++.|+.|++||+.++        +   .+..+.+|...|.+++|+|+ + .|++++
T Consensus        95 v~~l~~sp-----dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           95 IHHLALSC-----DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             EEEEEECT-----TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             ccEEEEcC-----CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            99999999     889999    7888999999998654        1   24556779999999999997 5 899999


Q ss_pred             CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (456)
                      .||+|++||++++........|...+.+++|+|+                                    +.+|++|+.|
T Consensus       170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspd------------------------------------g~~lasgs~d  213 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPK------------------------------------GKQLAVGKQN  213 (434)
T ss_dssp             TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTT------------------------------------SSCEEEEETT
T ss_pred             CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCC------------------------------------CCEEEEEcCC
Confidence            9999999999999777777778899999999998                                    5669999999


Q ss_pred             CcEEEEecCCCCCCccccc-------cccccEeEEEECCCCCEEEE-EECCCc------EEEEeCCCC
Q 012799          339 FTMFLWEPAVSKQPKTRMT-------GHQQLVNHVYFSPDGQWVAS-ASFDKS------IKLWNGTTG  392 (456)
Q Consensus       339 g~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~s-~~~dg~------i~iwd~~~~  392 (456)
                      |.|++||++ .. ....+.       .|...|.+++|++++.++++ ++.||.      +++|++...
T Consensus       214 g~v~iwd~~-~~-~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          214 GTVVQYLPT-LQ-EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             SCEEEECTT-CC-EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CcEEEEccC-Cc-ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            999999977 22 222222       23448999999999888754 445543      899998764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=7.4e-20  Score=166.59  Aligned_cols=264  Identities=9%  Similarity=0.071  Sum_probs=173.2

Q ss_pred             eEEEEECC--CcEEEEeC--CCCcceeE--Ee-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCCCccccccCcc
Q 012799          122 QLASGSGD--TTVRLWDL--NTQTPMFK--CT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ-TGKPSGNPLSGHK  193 (456)
Q Consensus       122 ~l~~~~~d--~~v~vwd~--~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~  193 (456)
                      .++.|+..  +.|.+|++  .+++....  .. .....+..++|+|++++|++++.+ .|.+|++. +++...  ...+.
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~--~~~~~   80 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH--EASHP   80 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE--EEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE--eeEee
Confidence            35556543  46877765  34443211  11 234568899999999999999888 99999997 665432  11111


Q ss_pred             --cceEEEEecccccCCCCCE--EEEEe-------------CCCcEEEEECC-CCeEEEEec----CcCccEEEEEeCCC
Q 012799          194 --KWITGISWEPVHLNAPCRR--FVSAS-------------KDGDARIWDVS-LRKCVICLS----GHTLAVTCVKWGGD  251 (456)
Q Consensus       194 --~~v~~~~~~~~~~~~~~~~--l~~~~-------------~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~  251 (456)
                        +....++|+|     +|+.  ++++.             .+|.+.+|++. .++....+.    .+...+.+++|+|+
T Consensus        81 ~~g~~~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd  155 (365)
T 1jof_A           81 IGGHPRANDADT-----NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT  155 (365)
T ss_dssp             CCSSGGGGCTTS-----CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT
T ss_pred             cCCCCccEEECC-----CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC
Confidence              2234466666     8884  44553             68999999997 455443332    24567899999999


Q ss_pred             C-eEEEEeC-CCcEEEEECC-CCeEE--EEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799          252 G-VIYTGSQ-DCTIKVWETT-QGKLI--RELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (456)
Q Consensus       252 ~-~l~~~~~-dg~i~iwd~~-~~~~~--~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (456)
                      | .++++.. ++.|++||+. +++..  ..+.  .+...+..++|+|+                                
T Consensus       156 G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd--------------------------------  203 (365)
T 1jof_A          156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT--------------------------------  203 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT--------------------------------
T ss_pred             CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC--------------------------------
Confidence            9 6666654 6799999998 67643  3333  23566888999998                                


Q ss_pred             cCCCCCEEEEEeC-CCcEEEEecCCC-CCC------ccccc----cccc------cEeEEE-ECCCCCEEEEEECCC---
Q 012799          325 KGNAPERLVSGSD-DFTMFLWEPAVS-KQP------KTRMT----GHQQ------LVNHVY-FSPDGQWVASASFDK---  382 (456)
Q Consensus       325 ~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~------~~~~~----~~~~------~v~~~~-~sp~~~~l~s~~~dg---  382 (456)
                          ++++++++. ++.+.+|++... ...      ...+.    +|..      .+..++ |+|||++|++++.+.   
T Consensus       204 ----g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~  279 (365)
T 1jof_A          204 ----GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE  279 (365)
T ss_dssp             ----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT
T ss_pred             ----CCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCC
Confidence                555766664 789999986532 111      11111    2222      588999 999999987765432   


Q ss_pred             ---cEEEEeCC-CCeEEEE---EecccccEEEEEeeeeeeecCCCCceeeecccccccceeEec---CCCeEEEeeCC-C
Q 012799          383 ---SIKLWNGT-TGKFVAV---FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA---DSRLLLSGSKD-S  451 (456)
Q Consensus       383 ---~i~iwd~~-~~~~~~~---~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~s~s~D-g  451 (456)
                         .|.+|++. ++++...   ...+......+                           +|+|   ||++|++++.+ +
T Consensus       280 ~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~---------------------------a~sp~~~dg~~l~v~~~~~~  332 (365)
T 1jof_A          280 LQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN---------------------------AVSPCPWSDEWMAITDDQEG  332 (365)
T ss_dssp             SCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC---------------------------CEEECTTCTTEEEEECSSSC
T ss_pred             CCCeEEEEEECCCCCEEEeeeeeecCCCCcccc---------------------------eecCCCcCCCEEEEEEcCCC
Confidence               89999986 5665432   22232223334                           8899   89999998864 8


Q ss_pred             ceEEC
Q 012799          452 TLKVT  456 (456)
Q Consensus       452 ~v~iW  456 (456)
                      .|+||
T Consensus       333 ~v~v~  337 (365)
T 1jof_A          333 WLEIY  337 (365)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99887

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=6.2e-21  Score=189.86  Aligned_cols=234  Identities=12%  Similarity=0.147  Sum_probs=166.0

Q ss_pred             cEEEEEECCCCCeEEEEEC---------CCcEEEEeCCCCcce--eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799          110 AVLSVAFSPDGRQLASGSG---------DTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~---------d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  178 (456)
                      .|.+++|||||++||+++.         ++.|++||+.+++.+  ..+   ...+..++|+|||+.|+.+. ++.|++|+
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~  136 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ  136 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence            4899999999999998876         689999999988752  222   35688999999999999986 78999999


Q ss_pred             CCCCCCccccccCcccce-----------------EEEEecccccCCCCCEEEEEeCCC---------------------
Q 012799          179 PQTGKPSGNPLSGHKKWI-----------------TGISWEPVHLNAPCRRFVSASKDG---------------------  220 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~~~~~~l~~~~~dg---------------------  220 (456)
                      +.+++.......++...+                 .+++|+|     ||+.|++++.|.                     
T Consensus       137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-----DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  211 (719)
T 1z68_A          137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-----NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN  211 (719)
T ss_dssp             STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-----TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred             CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-----CCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence            988876542223333322                 4799999     999999988652                     


Q ss_pred             -------------cEEEEECCCCeEE---E-----EecCcCccEEEEEeCCCC-eEEEEeCC----CcEEEEE----CCC
Q 012799          221 -------------DARIWDVSLRKCV---I-----CLSGHTLAVTCVKWGGDG-VIYTGSQD----CTIKVWE----TTQ  270 (456)
Q Consensus       221 -------------~i~iwd~~~~~~~---~-----~~~~~~~~v~~~~~~~~~-~l~~~~~d----g~i~iwd----~~~  270 (456)
                                   .|++||+.+++..   .     .+.+|...+..++|+|++ .+++....    ..|.+||    +.+
T Consensus       212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~  291 (719)
T 1z68_A          212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT  291 (719)
T ss_dssp             EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS
T ss_pred             ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC
Confidence                         7889999887642   1     123577889999999999 44443322    2488899    877


Q ss_pred             CeEEEEe----ecCCcceE-----EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE--EEeCCC
Q 012799          271 GKLIREL----KGHGHWVN-----SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV--SGSDDF  339 (456)
Q Consensus       271 ~~~~~~~----~~~~~~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~dg  339 (456)
                      ++....+    ..+...+.     .+.|+|+                                    ++.++  ++..+|
T Consensus       292 g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd------------------------------------g~~l~~~~~~~~g  335 (719)
T 1z68_A          292 WDCPKTQEHIEESRTGWAGGFFVSTPVFSYD------------------------------------AISYYKIFSDKDG  335 (719)
T ss_dssp             EECCGGGEEEEECSSSCSSSSSCCCCEECTT------------------------------------SSCEEEEEECTTS
T ss_pred             CceEEEEecccccCCceEccccCCccEECCC------------------------------------CCeEEEEEEccCC
Confidence            7665444    35555565     6778887                                    33233  344555


Q ss_pred             --cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC-----CcEEEEeCCC
Q 012799          340 --TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-----KSIKLWNGTT  391 (456)
Q Consensus       340 --~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-----g~i~iwd~~~  391 (456)
                        .|.+||+..+.  ...+..+...+..+.++ +++.|+..+.+     +..++|.+..
T Consensus       336 ~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          336 YKHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             CEEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             ceEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence              56677765443  33455556667777777 88877766655     7888887653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=1.2e-19  Score=165.04  Aligned_cols=266  Identities=13%  Similarity=0.110  Sum_probs=173.4

Q ss_pred             CCeEEEEE----CCCcEEEEeCC--CCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCC--CCCcc-
Q 012799          120 GRQLASGS----GDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCWDPQT--GKPSG-  186 (456)
Q Consensus       120 ~~~l~~~~----~d~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~--~~~~~-  186 (456)
                      ..+++.|+    .++.|.+|+++  +++.......+...+..++|+|++++|++++.+    +.|.+|++..  ++... 
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence            34556664    35679998764  454333222267778889999999999999886    7999998865  33211 


Q ss_pred             ccccCcccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCeEEE------EecC--------cCccEEEEEeCCC
Q 012799          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVI------CLSG--------HTLAVTCVKWGGD  251 (456)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~------~~~~--------~~~~v~~~~~~~~  251 (456)
                      .....+......+++       +++++++++ .++.|.+|++.....+.      ...+        +...+.+++|+|+
T Consensus        93 ~~~~~~~~~p~~~~~-------dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd  165 (361)
T 3scy_A           93 NTQKTMGADPCYLTT-------NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD  165 (361)
T ss_dssp             EEEECSSSCEEEEEE-------CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred             eEeccCCCCcEEEEE-------CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC
Confidence            011223344555555       456666665 58899999997543221      1111        1234688999999


Q ss_pred             C-eEEEEe-CCCcEEEEECCCCe-------E------EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799          252 G-VIYTGS-QDCTIKVWETTQGK-------L------IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (456)
Q Consensus       252 ~-~l~~~~-~dg~i~iwd~~~~~-------~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (456)
                      | .+++++ .++.|.+|++....       .      .............++|+|+                        
T Consensus       166 g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd------------------------  221 (361)
T 3scy_A          166 GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD------------------------  221 (361)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT------------------------
T ss_pred             CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC------------------------
Confidence            9 565555 47899999887533       1      1112234455778999998                        


Q ss_pred             HHhhhhhccCCCCCEEEEEe-CCCcEEEEecCCCCCC-c---cccccccccEeEEEECCCCCEEEEEECC--CcEEEEeC
Q 012799          317 ALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQP-K---TRMTGHQQLVNHVYFSPDGQWVASASFD--KSIKLWNG  389 (456)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~-~---~~~~~~~~~v~~~~~sp~~~~l~s~~~d--g~i~iwd~  389 (456)
                                  ++++++++ .++.|.+||+..+... .   .....+...+..++|+|||++|+++..+  +.|.+|++
T Consensus       222 ------------g~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          222 ------------GKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV  289 (361)
T ss_dssp             ------------SSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred             ------------CCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence                        45566665 6899999998743211 1   1122333456899999999998776654  89999998


Q ss_pred             C--CCe--EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEee-CCCceEEC
Q 012799          390 T--TGK--FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVT  456 (456)
Q Consensus       390 ~--~~~--~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s-~Dg~v~iW  456 (456)
                      .  +++  .+..+.. ...+..+                           +|+|||++|++++ .++.|.+|
T Consensus       290 ~~~~g~~~~~~~~~~-g~~~~~~---------------------------~~spdg~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          290 DETNGTLTKVGYQLT-GIHPRNF---------------------------IITPNGKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             CTTTCCEEEEEEEEC-SSCCCEE---------------------------EECTTSCEEEEEETTTTEEEEE
T ss_pred             cCCCCcEEEeeEecC-CCCCceE---------------------------EECCCCCEEEEEECCCCCEEEE
Confidence            5  454  3434443 3345556                           8999999988887 67888885

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=8.8e-20  Score=181.64  Aligned_cols=252  Identities=11%  Similarity=0.056  Sum_probs=176.8

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCC-----EEEEEEcCCCCEEEEEeCC---------CeEE
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW-----VLCIAWSADGKHLVSGSKA---------GELQ  175 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~~d---------g~i~  175 (456)
                      ...+++|+|||++++++  |++|++||+.+++....+.+|...     ...++|||||++|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            35579999999998886  899999999999887777776543     2348899999999998876         5677


Q ss_pred             EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCcCccE-----------
Q 012799          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAV-----------  243 (456)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v-----------  243 (456)
                      +||+.+++..  .+..+...+..++|+|     +|+.|+.+. ++.|++||+.+++..... .++...+           
T Consensus        96 ~~d~~~~~~~--~l~~~~~~~~~~~~SP-----dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e  167 (740)
T 4a5s_A           96 IYDLNKRQLI--TEERIPNNTQWVTWSP-----VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE  167 (740)
T ss_dssp             EEETTTTEEC--CSSCCCTTEEEEEECS-----STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred             EEECCCCcEE--EcccCCCcceeeEECC-----CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence            9999998765  3566778899999999     999998885 689999999887754422 2232222           


Q ss_pred             ------EEEEeCCCC-eEEEEeCCC------------------------------------cEEEEECCC---Ce--EEE
Q 012799          244 ------TCVKWGGDG-VIYTGSQDC------------------------------------TIKVWETTQ---GK--LIR  275 (456)
Q Consensus       244 ------~~~~~~~~~-~l~~~~~dg------------------------------------~i~iwd~~~---~~--~~~  275 (456)
                            ..+.|+||| .|+.++.|.                                    .|++||+.+   ++  ...
T Consensus       168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~  247 (740)
T 4a5s_A          168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI  247 (740)
T ss_dssp             HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred             hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence                  348999999 676654321                                    478889888   62  222


Q ss_pred             Eee------cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe----CCCcEEEEe
Q 012799          276 ELK------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS----DDFTMFLWE  345 (456)
Q Consensus       276 ~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd  345 (456)
                      .+.      ++...+..++|+|++.                                    .++...    .+..|++||
T Consensus       248 ~l~~~~~~~~~~~~~~~~~wspdg~------------------------------------~~~~~~~r~~~~~~i~~~d  291 (740)
T 4a5s_A          248 QITAPASMLIGDHYLCDVTWATQER------------------------------------ISLQWLRRIQNYSVMDICD  291 (740)
T ss_dssp             EECCCHHHHTSCEEEEEEEEEETTE------------------------------------EEEEEEESSTTEEEEEEEE
T ss_pred             EecCCccCCCCCeEEEEEEEeCCCe------------------------------------EEEEEeCCCCCEEEEEEEE
Confidence            332      2667788899999854                                    244332    234799999


Q ss_pred             cCCCC----CC-cccc--ccccccEe-----EEEECCCCCEEE-EEEC-CC--cEEEEeCCCCeEEEEEecccccEEEE
Q 012799          346 PAVSK----QP-KTRM--TGHQQLVN-----HVYFSPDGQWVA-SASF-DK--SIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       346 ~~~~~----~~-~~~~--~~~~~~v~-----~~~~sp~~~~l~-s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      +.++.    .. ...+  ..|...+.     .++|+|||+.|+ ..+. +|  .|++||..+++...... ....+..+
T Consensus       292 ~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~  369 (740)
T 4a5s_A          292 YDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGI  369 (740)
T ss_dssp             EETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEE
T ss_pred             CCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-CCEEEEEE
Confidence            87765    11 1212  34555554     789999999877 6653 33  68888987766544333 34445444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.85  E-value=1.7e-20  Score=173.04  Aligned_cols=286  Identities=12%  Similarity=0.004  Sum_probs=177.7

Q ss_pred             EEEEEECCCCCeEEEEECC---CcEEEEeCCCCcceeEEecCCCCE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799          111 VLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWV-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       111 V~~~~~s~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  186 (456)
                      +.+++|+|||++|+.....   ..|.+||+.+++.... ..+.... ..+.|+|||++|+.++.++.|.+||+.+++...
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-TEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-CCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-ecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence            7788999999998877643   3688899988765443 3333333 347899999999999999999999998876432


Q ss_pred             ccccCcccceEE---EEecc-----------cccCCCCCEEEEE-----eCCCcEEEEECCCCeEEEEecCcCccEEEEE
Q 012799          187 NPLSGHKKWITG---ISWEP-----------VHLNAPCRRFVSA-----SKDGDARIWDVSLRKCVICLSGHTLAVTCVK  247 (456)
Q Consensus       187 ~~~~~~~~~v~~---~~~~~-----------~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  247 (456)
                       ....+......   +.|..           ..++++++.++.+     ..+..|++||+.+++..... .+...+..+.
T Consensus       117 -~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~  194 (396)
T 3c5m_A          117 -IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPI  194 (396)
T ss_dssp             -EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEE
T ss_pred             -EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccce
Confidence             22222222211   22210           1223366666544     35678999999888765444 4667789999


Q ss_pred             eCC-CC-eEEEEeCC------CcEEEEECCCCeEEEEeecC-CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799          248 WGG-DG-VIYTGSQD------CTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (456)
Q Consensus       248 ~~~-~~-~l~~~~~d------g~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (456)
                      |+| ++ .++..+.+      ..|.+||+..++........ ...+..+.|+|+                          
T Consensus       195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spd--------------------------  248 (396)
T 3c5m_A          195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPD--------------------------  248 (396)
T ss_dssp             EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTT--------------------------
T ss_pred             ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCC--------------------------
Confidence            999 67 56555543      46889998766543333321 335778899988                          


Q ss_pred             hhhhhccCCCCCEEEEEeCC-----CcEEEEecCCCCCCccccccccccEeEEEECC-CCCEEEEEE-------------
Q 012799          319 ERYNKIKGNAPERLVSGSDD-----FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASAS-------------  379 (456)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~-------------  379 (456)
                                +++|+.++.+     +.|++||+..+....  +..... .. +.|+| +|+++++++             
T Consensus       249 ----------g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~--l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~  314 (396)
T 3c5m_A          249 ----------GSAMAYVSYFKGQTDRVIYKANPETLENEE--VMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSY  314 (396)
T ss_dssp             ----------SSCEEEEEEETTTCCEEEEEECTTTCCEEE--EEECCS-EE-EEEECSSSSEEEEEECCC----------
T ss_pred             ----------CCEEEEEecCCCCccceEEEEECCCCCeEE--eeeCCC-CC-CCccCCCCceEEEecCCcceeecccccc
Confidence                      4445555433     449999976554221  111111 23 88999 999988765             


Q ss_pred             ---CCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC-CCceEE
Q 012799          380 ---FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKV  455 (456)
Q Consensus       380 ---~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~-Dg~v~i  455 (456)
                         .++.|++||+.+++.. .+..+...+...                ..+.......++|+|||+.|+.++. ++...|
T Consensus       315 ~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~----------------~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l  377 (396)
T 3c5m_A          315 NIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVL----------------DGDRQITHPHPSFTPNDDGVLFTSDFEGVPAI  377 (396)
T ss_dssp             CCCCCCEEEEEETTTTBCC-EEEECCCCCCCB----------------TTBSSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred             ccCCCCcEEEEecccCceE-EccCCCCccccc----------------cccccCCCCCceEccCCCeEEEEecCCCCceE
Confidence               3478999999887653 333333210000                0000000112289999998887764 565555


Q ss_pred             C
Q 012799          456 T  456 (456)
Q Consensus       456 W  456 (456)
                      |
T Consensus       378 ~  378 (396)
T 3c5m_A          378 Y  378 (396)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.84  E-value=5.8e-19  Score=174.02  Aligned_cols=263  Identities=13%  Similarity=0.014  Sum_probs=188.8

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEE--ECCCcEEEEeCCCCcceeEEecCCCCEE---------EEEEc--CCCCE-
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASG--SGDTTVRLWDLNTQTPMFKCTGHKNWVL---------CIAWS--ADGKH-  164 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~--~~d~~v~vwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-  164 (456)
                      -....+.+|...|..++|++++-+++..  +.++...||....+.....+..+...+.         ...|+  |||+. 
T Consensus        14 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~   93 (662)
T 3azo_A           14 IDAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL   93 (662)
T ss_dssp             CCHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred             CCHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeE
Confidence            3456678899999999999887677776  4578899999655555667777766666         66666  99998 


Q ss_pred             EEEEeC-CCeEEEEeCC--C-CCCccccccC-----cccceEEEEecccccCCCCCEEEEEeCC----------CcEEEE
Q 012799          165 LVSGSK-AGELQCWDPQ--T-GKPSGNPLSG-----HKKWITGISWEPVHLNAPCRRFVSASKD----------GDARIW  225 (456)
Q Consensus       165 l~s~~~-dg~i~vwd~~--~-~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~l~~~~~d----------g~i~iw  225 (456)
                      |+.++. +..|.++++.  . +...  .+..     |...+..++|+|     +|+.|++++.+          ..|++|
T Consensus        94 la~~~~~~~~l~~~~~~~~g~~~~~--~l~~~~~~~~~~~~~~~~~sp-----Dg~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           94 LVFTHFGDQRLYAFEPDAPGGAVPR--PLTPVSAVGGGLRWADPVLLP-----ERGEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             EEEEBTTTCCEEEECTTSTTCCCCE--ECSCCCCSTTCEEEEEEEEET-----TTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             EEEEECCCCeEEEEcCCCCCCCCCE--eccCCccCCCCccccCcEECC-----CCCEEEEEEecccCCCCCCceeEEEEE
Confidence            776654 5667777776  3 4432  2333     567788999999     99999998877          589999


Q ss_pred             ECCC------CeEEEEec-CcCccEEEEEeCCCC-eEEEEeCC--------CcEEEEECC-CC---eEEEEeecCCcceE
Q 012799          226 DVSL------RKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQD--------CTIKVWETT-QG---KLIRELKGHGHWVN  285 (456)
Q Consensus       226 d~~~------~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~i~  285 (456)
                      |+.+      ++. ..+. .+...+..++|+||| .|+.++.+        ..|++||+. ++   +.......+...+.
T Consensus       167 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~  245 (662)
T 3azo_A          167 PLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA  245 (662)
T ss_dssp             ETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred             ECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence            9987      554 4455 556778889999999 67766644        379999998 56   44444444567889


Q ss_pred             EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC--cEEEEecCCCCCCcccccccccc-
Q 012799          286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF--TMFLWEPAVSKQPKTRMTGHQQL-  362 (456)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~-  362 (456)
                      .+.|+|+                                    +++++++..++  .|++||+..+. .......+... 
T Consensus       246 ~~~~spd------------------------------------g~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~  288 (662)
T 3azo_A          246 QAEWAPD------------------------------------GSLIVATDRTGWWNLHRVDPATGA-ATQLCRREEEFA  288 (662)
T ss_dssp             EEEECTT------------------------------------SCEEEEECTTSSCEEEEECTTTCC-EEESSCCSSBSS
T ss_pred             ceEECCC------------------------------------CeEEEEECCCCCeEEEEEECCCCc-eeeccccccccc
Confidence            9999998                                    44577777788  56666653332 22222222222 


Q ss_pred             -------EeEEEECCCCCEEEEEECCCcEEEE--eCCCCeEEEEEecccccEEEE
Q 012799          363 -------VNHVYFSPDGQWVASASFDKSIKLW--NGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       363 -------v~~~~~sp~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~i  408 (456)
                             +..++|+|+++++++++. +.++||  |..+++ +..+..|...+..+
T Consensus       289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~  341 (662)
T 3azo_A          289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT  341 (662)
T ss_dssp             CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE
T ss_pred             CccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE
Confidence                   567899999999999998 999999  665565 56677776666554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=8.6e-18  Score=147.53  Aligned_cols=240  Identities=13%  Similarity=0.181  Sum_probs=173.8

Q ss_pred             cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe------cCCCCEEEEEEc-CCCCEEEEEeC-CCeEEE
Q 012799          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT------GHKNWVLCIAWS-ADGKHLVSGSK-AGELQC  176 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~s~~~-dg~i~v  176 (456)
                      .+|-..+.+++++++++++++...++.|.+||.+ ++.+..+.      ++...+..+++. ++++++++... ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            4677889999999999988888889999999987 55555553      244678999994 67766666543 889999


Q ss_pred             EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec--CcCccEEEEEeCCCC-e
Q 012799          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDG-V  253 (456)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~  253 (456)
                      || .+++........+...+.++++.+     +++.+++...++.|.+||.. ++.+..+.  .+...+..+++++++ .
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDN-----KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEI  177 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECT-----TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeC-----CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCE
Confidence            99 455544322233445688999988     88888877788999999964 45555543  345578999999999 4


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeecC--CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799          254 IYTGSQDCTIKVWETTQGKLIRELKGH--GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (456)
Q Consensus       254 l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (456)
                      +++...++.|++||.. ++.+..+...  ......++++++                                    +..
T Consensus       178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~------------------------------------G~l  220 (286)
T 1q7f_A          178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSN------------------------------------GEI  220 (286)
T ss_dssp             EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTT------------------------------------CCE
T ss_pred             EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCC------------------------------------CCE
Confidence            4555568899999974 5566666443  256788888887                                    455


Q ss_pred             EEEEeCCC-cEEEEecCCCCCCcccccccc--ccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799          332 LVSGSDDF-TMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       332 l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  392 (456)
                      +++...++ .|.+||.. +. ....+..+.  ..+.+++++|+|+++++ +.|++|++|+....
T Consensus       221 ~v~~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          221 LIADNHNNFNLTIFTQD-GQ-LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEECSSSCEEEEECTT-SC-EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEEeCCCCEEEEEECCC-CC-EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            77777775 99999943 32 333333322  34789999999987777 67999999998654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=6.9e-19  Score=160.15  Aligned_cols=243  Identities=9%  Similarity=0.057  Sum_probs=168.1

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCC-CCcceeEEec-CCCCEEEEEEcCCCCE--EEEEe-------------
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN-TQTPMFKCTG-HKNWVLCIAWSADGKH--LVSGS-------------  169 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~--l~s~~-------------  169 (456)
                      +...+..++|+|+|++|++++.+ .|.+|++. +++....... ..+.+.+++|+|+|++  ++++.             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            34467889999999999999887 99999997 6665433221 1123567899999994  44553             


Q ss_pred             CCCeEEEEeCCC-CCCcccccc----CcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECC-CCeEE--EEec--C
Q 012799          170 KAGELQCWDPQT-GKPSGNPLS----GHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVS-LRKCV--ICLS--G  238 (456)
Q Consensus       170 ~dg~i~vwd~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~-~~~~~--~~~~--~  238 (456)
                      .+|.+.+|++.. ++... ...    .+...+.+++|+|     +|++++++.. ++.|++||+. +++..  ..+.  .
T Consensus       117 ~~g~v~v~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~sp-----dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~  190 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEK-NVQNYEYQENTGIHGMVFDP-----TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD  190 (365)
T ss_dssp             SCCEEEEEEECTTCCEEE-EEEEEECCTTCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS
T ss_pred             CCceEEEEccCCCCcCcc-eEeeEEeCCCCcceEEEECC-----CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC
Confidence            689999999974 54322 111    2456788999999     9998887764 6799999998 66543  2332  2


Q ss_pred             cCccEEEEEeCCCC-eEEEEeC-CCcEEEEECC--CCeEE---EEeec-------CCc------ceEEEE-ecCcceeee
Q 012799          239 HTLAVTCVKWGGDG-VIYTGSQ-DCTIKVWETT--QGKLI---RELKG-------HGH------WVNSLA-LSTEYALRT  297 (456)
Q Consensus       239 ~~~~v~~~~~~~~~-~l~~~~~-dg~i~iwd~~--~~~~~---~~~~~-------~~~------~i~~~~-~~~~~~~~~  297 (456)
                      +...+..++|+|+| .+++++. ++.|.+|++.  +++..   ..+..       +..      .+..++ ++|+     
T Consensus       191 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd-----  265 (365)
T 1jof_A          191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS-----  265 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT-----
T ss_pred             CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCC-----
Confidence            35678999999999 6766664 7899999765  56542   22221       111      477888 9988     


Q ss_pred             ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC-C-----cEEEEecCCCCCCcc---ccccccccEeEEEE
Q 012799          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD-F-----TMFLWEPAVSKQPKT---RMTGHQQLVNHVYF  368 (456)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g-----~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~  368 (456)
                                                     +++++++..+ .     .|.+|++........   ....+...+..++|
T Consensus       266 -------------------------------G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~  314 (365)
T 1jof_A          266 -------------------------------GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV  314 (365)
T ss_dssp             -------------------------------SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE
T ss_pred             -------------------------------CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccccee
Confidence                                           4556655432 2     899999863333222   12234445678899


Q ss_pred             CC---CCCEEEEEECC-CcEEEEeCCCC
Q 012799          369 SP---DGQWVASASFD-KSIKLWNGTTG  392 (456)
Q Consensus       369 sp---~~~~l~s~~~d-g~i~iwd~~~~  392 (456)
                      +|   ||++|++++.+ +.|.+|++...
T Consensus       315 sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          315 SPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            99   89999988764 89999998765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.83  E-value=2.5e-18  Score=155.65  Aligned_cols=268  Identities=12%  Similarity=0.001  Sum_probs=181.6

Q ss_pred             CCCeEEEEE------CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCC
Q 012799          119 DGRQLASGS------GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTG  182 (456)
Q Consensus       119 ~~~~l~~~~------~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~  182 (456)
                      +++++++..      .|+.|.+||..+++.+..+..+..+  .++|+||+++++++.          .++.|.+||..++
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            555555543      3679999999999988888766555  899999999999886          3678999999887


Q ss_pred             CCccccccC-----cccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEE-ecCcCccEEEEEeCCCC--
Q 012799          183 KPSGNPLSG-----HKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG--  252 (456)
Q Consensus       183 ~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~--  252 (456)
                      +........     +......++++|     +|++++++..  ++.|.+||+.+++.+.. +... . ...+.+.|++  
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~sp-----dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~  164 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTT-----DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPR  164 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECT-----TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSS
T ss_pred             cEEEEEEcCccccccCCCcceEEECC-----CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCe
Confidence            765432211     223456788888     9999998864  58999999999998877 5422 2 2235567765  


Q ss_pred             eEEEEeCCCcEEEEECCC-CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799          253 VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (456)
                      .+++.+.||.+.+|++.. ++.......  .    ..+.+.....                         .....+++..
T Consensus       165 ~~~~~~~dg~~~~v~~~~~g~~~~~~~~--~----~~~~~~~~~~-------------------------~~~~~~~g~~  213 (361)
T 2oiz_A          165 SFMTICGDGGLLTINLGEDGKVASQSRS--K----QMFSVKDDPI-------------------------FIAPALDKDK  213 (361)
T ss_dssp             EEEEEETTSSEEEEEECTTSSEEEEEEC--C----CCSCTTTSCB-------------------------CSCCEECSSE
T ss_pred             eEEEECCCCcEEEEEECCCCcEeeeccc--c----ceEcCCCCce-------------------------EEEecccCCE
Confidence            788899999999999865 444322110  0    0011110000                         0000012345


Q ss_pred             EEEEeCCCcEEEEecCCCCCCccc-c---c---cc----cccEeEEEECCCCCEEEEEEC-----------CCcEEEEeC
Q 012799          332 LVSGSDDFTMFLWEPAVSKQPKTR-M---T---GH----QQLVNHVYFSPDGQWVASASF-----------DKSIKLWNG  389 (456)
Q Consensus       332 l~~~~~dg~i~iwd~~~~~~~~~~-~---~---~~----~~~v~~~~~sp~~~~l~s~~~-----------dg~i~iwd~  389 (456)
                      ++..+.++.+.++|+......... +   .   .+    ......++|+|+++.++++..           .+.|.+||+
T Consensus       214 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~  293 (361)
T 2oiz_A          214 AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT  293 (361)
T ss_dssp             EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred             EEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence            666678899999997544321110 0   0   00    011123789999888776543           348999999


Q ss_pred             CCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       390 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      .+++.+..+..+.  ..++                           +|+|||++|++++. ++|.||
T Consensus       294 ~t~~~v~~i~~~~--p~~i---------------------------a~spdg~~l~v~n~-~~v~v~  330 (361)
T 2oiz_A          294 KTKQRVARIPGRD--ALSM---------------------------TIDQQRNLMLTLDG-GNVNVY  330 (361)
T ss_dssp             TTTEEEEEEECTT--CCEE---------------------------EEETTTTEEEEECS-SCEEEE
T ss_pred             CCCcEEEEEecCC--eeEE---------------------------EECCCCCEEEEeCC-CeEEEE
Confidence            9999999998776  7888                           89999999998887 999987

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.82  E-value=4.6e-18  Score=153.76  Aligned_cols=253  Identities=13%  Similarity=0.134  Sum_probs=173.9

Q ss_pred             ccEEEEEECCCCCeEEEEE---------CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC---C--eE
Q 012799          109 EAVLSVAFSPDGRQLASGS---------GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---G--EL  174 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~---------~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g--~i  174 (456)
                      ..+..+++  ||+++|...         .++.|++||+.+++.. .+    ..+..++|+|||++|+.++.+   +  .|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            45677778  888887642         2567999999887643 33    568899999999999987754   3  38


Q ss_pred             EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC---------------------------CcEEEEEC
Q 012799          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD---------------------------GDARIWDV  227 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---------------------------g~i~iwd~  227 (456)
                      .+|++.+++...  +..+.. +..+.|+|     +++.|+.++.+                           ..|++||+
T Consensus        88 ~~~~~~~g~~~~--l~~~~~-~~~~~wsp-----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~  159 (347)
T 2gop_A           88 WVADLETLSSKK--ILEAKN-IRSLEWNE-----DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT  159 (347)
T ss_dssp             EEEETTTTEEEE--EEEESE-EEEEEECT-----TSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred             EEEECCCCceEE--EEcCCC-ccceeECC-----CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence            888888776543  222334 89999999     89988887642                           57999999


Q ss_pred             CCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCC---------cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeec
Q 012799          228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC---------TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG  298 (456)
Q Consensus       228 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  298 (456)
                      .+++.+..+.. . .+..+.|+|+|.++++..++         .|.++|  +++. ..+..+ ..+..+  +|+      
T Consensus       160 ~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~--spd------  225 (347)
T 2gop_A          160 ESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYAV--DSD------  225 (347)
T ss_dssp             TTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEEE--EEC------
T ss_pred             CCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCce-EEeccC-cceeeE--CCC------
Confidence            98887444544 3 78899999999444554432         355555  5543 333323 334433  665      


Q ss_pred             cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC--------CcEEEEecCCCCCCccccccccccEeE-EEEC
Q 012799          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD--------FTMFLWEPAVSKQPKTRMTGHQQLVNH-VYFS  369 (456)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~s  369 (456)
                                                    +++++.++.+        ..|.+||   ..........+...+.. +.|+
T Consensus       226 ------------------------------g~~l~~~~~~~~~~~~~~~~l~~~d---~~~~~~l~~~~~~~~~~~~~~s  272 (347)
T 2gop_A          226 ------------------------------GERILLYGKPEKKYMSEHNKLYIYD---GKEVMGILDEVDRGVGQAKIKD  272 (347)
T ss_dssp             ------------------------------SSCEEEEECCSSSCCCSSCEEEEEC---SSCEEESSTTCCSEEEEEEEET
T ss_pred             ------------------------------CCEEEEEEccccCCccccceEEEEC---CCceEeccccCCcccCCccEEc
Confidence                                          4456665543        4688887   33344444566777886 9999


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799          370 PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (456)
Q Consensus       370 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~  449 (456)
                       ++ ++++++.++.+++| +.+++.... ..+...|.++                           +|+|  .++++++.
T Consensus       273 -dg-~~~~~~~~~~~~l~-~~~g~~~~~-~~~~~~v~~~---------------------------~~s~--~~~~~~~~  319 (347)
T 2gop_A          273 -GK-VYFTLFEEGSVNLY-IWDGEIKPI-AKGRHWIMGF---------------------------DVDE--IVVYLKET  319 (347)
T ss_dssp             -TE-EEEEEEETTEEEEE-EESSSEEEE-ECSSSEEEEE---------------------------EESS--SEEEEEEC
T ss_pred             -Cc-EEEEEecCCcEEEE-EcCCceEEE-ecCCCeEEee---------------------------eeeC--cEEEEEcC
Confidence             88 99999999999999 876665443 4456778888                           8888  67777777


Q ss_pred             CCce-EEC
Q 012799          450 DSTL-KVT  456 (456)
Q Consensus       450 Dg~v-~iW  456 (456)
                      ++.. .||
T Consensus       320 ~~~~~~l~  327 (347)
T 2gop_A          320 ATRLRELF  327 (347)
T ss_dssp             SSSCCEEE
T ss_pred             CCChHHhe
Confidence            7654 554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.82  E-value=3.4e-18  Score=153.66  Aligned_cols=267  Identities=13%  Similarity=0.093  Sum_probs=191.5

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      ..|.+++|++++..++..+.++.++.|   .++....+..+...+.+++|++++++++++..++.|.+||.++++... .
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~-~   81 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-P   81 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-E
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE-E
Confidence            456778899988877777788899999   355666777787888999999999988888889999999998876543 2


Q ss_pred             ccCcccceEEEEecccccCCCCCEEEEEeCC----CcEEEEECCCCeEEEEec--CcCccEEEEEeCCCCeEEEEeC---
Q 012799          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKD----GDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGVIYTGSQ---  259 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~---  259 (456)
                      ...+...+.+++++|     +++++++...+    +.|.+||..++.....+.  .+...+.+++++|+|.++.++.   
T Consensus        82 ~~~~~~~~~~i~~~~-----dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  156 (333)
T 2dg1_A           82 FVSHKANPAAIKIHK-----DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY  156 (333)
T ss_dssp             EECSSSSEEEEEECT-----TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred             eeCCCCCcceEEECC-----CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc
Confidence            224556799999998     88877777666    689999998776553332  2446789999999995555554   


Q ss_pred             ----CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE-EE
Q 012799          260 ----DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VS  334 (456)
Q Consensus       260 ----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~  334 (456)
                          .+.|..+|..+++..... ........++++++                                    ++.+ ++
T Consensus       157 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~d------------------------------------g~~l~v~  199 (333)
T 2dg1_A          157 STNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTD------------------------------------EKVLWVT  199 (333)
T ss_dssp             TTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTT------------------------------------SSEEEEE
T ss_pred             ccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCC------------------------------------CCEEEEE
Confidence                356777776655443322 22334677888887                                    4434 45


Q ss_pred             EeCCCcEEEEecCCCCCCcc--------ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc---
Q 012799          335 GSDDFTMFLWEPAVSKQPKT--------RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG---  403 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~--------~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---  403 (456)
                      .+.++.|.+||+........        ...++ ..+..++++++|+++++...++.|.+||. +++.+..+..+..   
T Consensus       200 ~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g  277 (333)
T 2dg1_A          200 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEG  277 (333)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGT
T ss_pred             eCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccc
Confidence            55678999999764322211        11122 46788999999998888888899999998 5777766654433   


Q ss_pred             ---cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCC
Q 012799          404 ---PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD  450 (456)
Q Consensus       404 ---~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D  450 (456)
                         .+.++                           +|+||++.|+.++.+
T Consensus       278 ~~~~~~~~---------------------------~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          278 HMLRSTHP---------------------------QFIPGTNQLIICSND  300 (333)
T ss_dssp             CSCBCCEE---------------------------EECTTSCEEEEEEEC
T ss_pred             cccCcceE---------------------------EECCCCCEEEEEeCc
Confidence               46666                           889998777666555

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=1.5e-17  Score=148.83  Aligned_cols=247  Identities=15%  Similarity=0.134  Sum_probs=180.9

Q ss_pred             cccEEEEEECCCCCeEEEEECC------------------------CcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCC
Q 012799          108 TEAVLSVAFSPDGRQLASGSGD------------------------TTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADG  162 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d------------------------~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~  162 (456)
                      -+.|.+++++|+|+++++...+                        ++|.+||..+++.+..+. ++-..+..++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            5679999999999999888777                        479999998888776554 445678999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCC-Cccccc--------cCcccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCeE
Q 012799          163 KHLVSGSKAGELQCWDPQTGK-PSGNPL--------SGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKC  232 (456)
Q Consensus       163 ~~l~s~~~dg~i~vwd~~~~~-~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~  232 (456)
                      +++++...++.|++|+..... .+...-        ..+......++++|.    ++..+++.+ .++.|++|| ..++.
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~----~g~lyv~d~~~~~~I~~~~-~~g~~  177 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS----TGAVFVSDGYCNSRIVQFS-PSGKF  177 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT----TCCEEEEECSSCCEEEEEC-TTSCE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC----CCeEEEEeCCCCCeEEEEc-CCCCE
Confidence            988888889999999986542 222111        234446788999872    456666665 689999999 56666


Q ss_pred             EEEecC----------cCccEEEEEeCCC-C-eEEEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceeeec
Q 012799          233 VICLSG----------HTLAVTCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTG  298 (456)
Q Consensus       233 ~~~~~~----------~~~~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~  298 (456)
                      +..+..          +-.....++++|+ + .+++...++.|++||..+++.+..+.  .+...+..++++|...+.. 
T Consensus       178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~-  256 (329)
T 3fvz_A          178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV-  256 (329)
T ss_dssp             EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE-
T ss_pred             EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe-
Confidence            666632          2234889999998 6 55556678899999999899888874  3456778888888321111 


Q ss_pred             cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc---ccccccEeEEEECCCCCEE
Q 012799          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM---TGHQQLVNHVYFSPDGQWV  375 (456)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l  375 (456)
                                                   ++..+++...+..|++||...+. ....+   .++...+..++++|+|.++
T Consensus       257 -----------------------------~g~~~v~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~~p~~ia~~~dG~ly  306 (329)
T 3fvz_A          257 -----------------------------NGKPYFGDQEPVQGFVMNFSSGE-IIDVFKPVRKHFDMPHDIVASEDGTVY  306 (329)
T ss_dssp             -----------------------------ECCCCTTCSCCCCEEEEETTTCC-EEEEECCSSSCCSSEEEEEECTTSEEE
T ss_pred             -----------------------------CCCEEeccCCCcEEEEEEcCCCe-EEEEEcCCCCccCCeeEEEECCCCCEE
Confidence                                         02223444556789999976654 33333   3566778999999999888


Q ss_pred             EEEECCCcEEEEeCC
Q 012799          376 ASASFDKSIKLWNGT  390 (456)
Q Consensus       376 ~s~~~dg~i~iwd~~  390 (456)
                      ++...++.|++|++.
T Consensus       307 vad~~~~~I~~~~~~  321 (329)
T 3fvz_A          307 IGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEESSSCCEEEEEEE
T ss_pred             EEECCCCEEEEEeCC
Confidence            888889999999964

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.81  E-value=7.5e-18  Score=152.39  Aligned_cols=244  Identities=14%  Similarity=0.049  Sum_probs=164.5

Q ss_pred             cEEEEEECCCCCeEE-EEECCCcEEEEeCCCCcceeEEecCC------CCEEEEEEcCCCCEEEEEeCC-----------
Q 012799          110 AVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHK------NWVLCIAWSADGKHLVSGSKA-----------  171 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~d-----------  171 (456)
                      .+..++|+|+|++++ ++..++.|.+||+.+++....+..+.      ..+..++|+|+|++|++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            577899999998665 44568899999999988777665332      237889999999999998865           


Q ss_pred             -CeEEEEeCCCCCCcccc-ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc--------
Q 012799          172 -GELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL--------  241 (456)
Q Consensus       172 -g~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------  241 (456)
                       +.|.+||+.+++..... ...+...+.+++|+|     +++ +++++.  .|++||+.+++.+..+..+..        
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  195 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-----DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAP  195 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-----TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCC
T ss_pred             CCeEEEEECCCccccceeeeccCCCcccceeECC-----CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCc
Confidence             89999999885533211 122334578888998     888 555543  499999999988777653320        


Q ss_pred             ----------------cEEEEEeCCCC-eE-EEEeCCCcEEEEECCCCeEE-EEeecCCcceEEEEecC-cceeeecccc
Q 012799          242 ----------------AVTCVKWGGDG-VI-YTGSQDCTIKVWETTQGKLI-RELKGHGHWVNSLALST-EYALRTGAFD  301 (456)
Q Consensus       242 ----------------~v~~~~~~~~~-~l-~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~~~-~~~~~~~~~~  301 (456)
                                      ....+++.+++ .. ........+..+|..+++.. ..+......+..++++| +         
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d---------  266 (349)
T 1jmx_B          196 DVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD---------  266 (349)
T ss_dssp             BCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSC---------
T ss_pred             cceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCC---------
Confidence                            23445555433 00 00001111222455544321 12223455677888888 7         


Q ss_pred             CCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC
Q 012799          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD  381 (456)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d  381 (456)
                                                 +++++++  ++.|.+||+.+.+. ...+. ....+.+++|+|+|++|++++.+
T Consensus       267 ---------------------------g~~l~~~--~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~  315 (349)
T 1jmx_B          267 ---------------------------PNQIYGV--LNRLAKYDLKQRKL-IKAAN-LDHTYYCVAFDKKGDKLYLGGTF  315 (349)
T ss_dssp             ---------------------------TTEEEEE--ESEEEEEETTTTEE-EEEEE-CSSCCCEEEECSSSSCEEEESBS
T ss_pred             ---------------------------CCEEEEE--cCeEEEEECccCeE-EEEEc-CCCCccceEECCCCCEEEEecCC
Confidence                                       5557777  88999999776442 22222 23347789999999988888889


Q ss_pred             CcEEEEeCCCCeEEEEEecc
Q 012799          382 KSIKLWNGTTGKFVAVFRGH  401 (456)
Q Consensus       382 g~i~iwd~~~~~~~~~~~~~  401 (456)
                      +.|++||..+++.+..+..+
T Consensus       316 ~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          316 NDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             SEEEEEETTTTEEEEEEECS
T ss_pred             CeEEEEeccccceeeeeecC
Confidence            99999999999988887654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=4.9e-18  Score=153.76  Aligned_cols=259  Identities=13%  Similarity=0.098  Sum_probs=172.8

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEEC----------CCcEEEEeCCCCcceeEEecC------CCCEEEEEEcCCCCE
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSG----------DTTVRLWDLNTQTPMFKCTGH------KNWVLCIAWSADGKH  164 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~----------d~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~  164 (456)
                      ..++..+..+  .++|+|||++++++..          ++.|.+||..+.+.+..+...      ......++++|||++
T Consensus        44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~  121 (361)
T 2oiz_A           44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF  121 (361)
T ss_dssp             EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred             EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence            3445555555  8999999999998862          568999999998888777532      345678999999999


Q ss_pred             EEEEeC--CCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-CeEEEE------
Q 012799          165 LVSGSK--AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVIC------  235 (456)
Q Consensus       165 l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~------  235 (456)
                      |+++..  ++.|.+||+.+++.+...+. ... ...+.+.|.    ....+++.+.||.+.+|+... ++....      
T Consensus       122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v~~~p~----~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~  195 (361)
T 2oiz_A          122 IVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSVIPQPN----RPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM  195 (361)
T ss_dssp             EEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEEEECTT----SSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred             EEEECCCCCCeEEEEECCCCcEEEEEec-CCC-cceeEEcCC----CCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Confidence            998874  57899999998876542011 111 122445552    236788899999999999865 444311      


Q ss_pred             ecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeE--EEEeecCC----------cceEEEEecCcceeeeccccC
Q 012799          236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL--IRELKGHG----------HWVNSLALSTEYALRTGAFDH  302 (456)
Q Consensus       236 ~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~----------~~i~~~~~~~~~~~~~~~~~~  302 (456)
                      +.....++ .+.+.+++ .++..+.++.+.++|+..+..  ...+....          .....++++++          
T Consensus       196 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d----------  264 (361)
T 2oiz_A          196 FSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA----------  264 (361)
T ss_dssp             SCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT----------
T ss_pred             EcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC----------
Confidence            11112221 12223445 566667889999999875432  22221110          00111455554          


Q ss_pred             CCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-----------CCcEEEEecCCCCCCccccccccccEeEEEECCC
Q 012799          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-----------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD  371 (456)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~  371 (456)
                                                +.+++++..           .+.|.+||+.+.+ .+..+..+.  +.+++|+||
T Consensus       265 --------------------------g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~-~v~~i~~~~--p~~ia~spd  315 (361)
T 2oiz_A          265 --------------------------SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ-RVARIPGRD--ALSMTIDQQ  315 (361)
T ss_dssp             --------------------------TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE-EEEEEECTT--CCEEEEETT
T ss_pred             --------------------------CCeEEEEEccCCCcccccCCCceEEEEECCCCc-EEEEEecCC--eeEEEECCC
Confidence                                      344554432           3489999977654 444455555  899999999


Q ss_pred             CCEEEEEECCCcEEEEeCCCC--eEEEEEecccccEEEE
Q 012799          372 GQWVASASFDKSIKLWNGTTG--KFVAVFRGHVGPVYQI  408 (456)
Q Consensus       372 ~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i  408 (456)
                      |++|++++. +.|.+||..++  +.+..+..+...-..+
T Consensus       316 g~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~  353 (361)
T 2oiz_A          316 RNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQV  353 (361)
T ss_dssp             TTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEE
T ss_pred             CCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEE
Confidence            999998886 99999999999  9998886666666777

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=5.5e-17  Score=142.38  Aligned_cols=234  Identities=12%  Similarity=0.211  Sum_probs=168.4

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc-----cCcccceEEEEec-ccccCCCCCEEEEEeC-CC
Q 012799          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL-----SGHKKWITGISWE-PVHLNAPCRRFVSASK-DG  220 (456)
Q Consensus       148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~-~~~~~~~~~~l~~~~~-dg  220 (456)
                      ++-..+.+++++++++++++...++.|.+||.+ ++......     .++...+..+++. +     ++..+++... ++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-----~g~l~v~~~~~~~  100 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-----SGDIIVTERSPTH  100 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-----TTEEEEEECGGGC
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-----CCeEEEEcCCCCC
Confidence            455678999999999988888889999999987 44332111     1244567888884 4     5555555533 78


Q ss_pred             cEEEEECCCCeEEEEec-CcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceee
Q 012799          221 DARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALR  296 (456)
Q Consensus       221 ~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~  296 (456)
                      .|++|| .+++.+..+. .+...+.++++++++ .+++...++.|.+||.. ++.+..+.  .+...+..++++++    
T Consensus       101 ~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~----  174 (286)
T 1q7f_A          101 QIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK----  174 (286)
T ss_dssp             EEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS----
T ss_pred             EEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCC----
Confidence            999999 5666666553 344678999999999 55555567899999964 56665554  23446788998887    


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc--cccccEeEEEECCCCCE
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--GHQQLVNHVYFSPDGQW  374 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~  374 (456)
                                                      ++.+++...++.|++||... . ....+.  ++...+..++++++|++
T Consensus       175 --------------------------------g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~g~~~~p~~i~~d~~G~l  220 (286)
T 1q7f_A          175 --------------------------------QEIFISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGEI  220 (286)
T ss_dssp             --------------------------------SEEEEEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCCE
T ss_pred             --------------------------------CCEEEEECCCCEEEEEcCCC-C-EEEEEccCCccCCCcEEEECCCCCE
Confidence                                            44477777889999999632 2 222232  22357899999999998


Q ss_pred             EEEEECCC-cEEEEeCCCCeEEEEEecccc--cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC
Q 012799          375 VASASFDK-SIKLWNGTTGKFVAVFRGHVG--PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS  451 (456)
Q Consensus       375 l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg  451 (456)
                      +++...++ .|.+||. +++.+..+..+..  .+.++                           +++|+|+++++ +.|+
T Consensus       221 ~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i---------------------------~~~~~g~l~vs-~~~~  271 (286)
T 1q7f_A          221 LIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDV---------------------------ALMDDGSVVLA-SKDY  271 (286)
T ss_dssp             EEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEE---------------------------EEETTTEEEEE-ETTT
T ss_pred             EEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeE---------------------------EECCCCcEEEE-CCCC
Confidence            88887776 9999995 5777777765433  35566                           88999987777 6799


Q ss_pred             ceEEC
Q 012799          452 TLKVT  456 (456)
Q Consensus       452 ~v~iW  456 (456)
                      +|++|
T Consensus       272 ~v~v~  276 (286)
T 1q7f_A          272 RLYIY  276 (286)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99998

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.81  E-value=6.1e-16  Score=136.52  Aligned_cols=277  Identities=9%  Similarity=0.026  Sum_probs=190.3

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE-EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (456)
Q Consensus       104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  182 (456)
                      +..+...+.+++++++|+++++...++.|.+||.. ++.... ...+...+.++++.++|+++++...++.|..|+.. +
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            34566789999999999977776667899999988 543322 22345789999999999988877778899999986 3


Q ss_pred             CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE-EecCcCccEEEEEeCCCCeEEEEe-CC
Q 012799          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGVIYTGS-QD  260 (456)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~-~d  260 (456)
                      +............+.++++.+     ++..+++...++.|..||. +++... ........+..+++++++.++.+. .+
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  161 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGP-----NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQN  161 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             cEEEEeCCCcCCCceeeEECC-----CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCC
Confidence            322111222345688888887     7877777777889999998 444332 233345678999999998555544 56


Q ss_pred             CcEEEEECCCCeEEEE-eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799          261 CTIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (456)
Q Consensus       261 g~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  339 (456)
                      +.|..||. +++.... .......+..+++.++                                    +..+++...++
T Consensus       162 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~------------------------------------g~l~v~~~~~~  204 (299)
T 2z2n_A          162 NAIGRITE-SGDITEFKIPTPASGPVGITKGND------------------------------------DALWFVEIIGN  204 (299)
T ss_dssp             TEEEEECT-TCCEEEEECSSTTCCEEEEEECTT------------------------------------SSEEEEETTTT
T ss_pred             CEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC------------------------------------CCEEEEccCCc
Confidence            88999998 6655432 2333445677887776                                    44456655678


Q ss_pred             cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE-EecccccEEEEEeeeeeeecC
Q 012799          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRY  418 (456)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~  418 (456)
                      .|.+||. ...........+...+.+++++++|++.++...++.|..||. +++.... +..+...+.++          
T Consensus       205 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i----------  272 (299)
T 2z2n_A          205 KIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGI----------  272 (299)
T ss_dssp             EEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEE----------
T ss_pred             eEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceE----------
Confidence            9999997 433222222334567899999999997776657889999998 5653322 22344566777          


Q ss_pred             CCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                                       ++ ++|+++++.+.++.+++
T Consensus       273 -----------------~~-~~g~l~v~~~~~~l~~~  291 (299)
T 2z2n_A          273 -----------------CF-DGETIWFAMECDKIGKL  291 (299)
T ss_dssp             -----------------EE-CSSCEEEEETTTEEEEE
T ss_pred             -----------------Ee-cCCCEEEEecCCcEEEE
Confidence                             88 88888777665555443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=3.5e-18  Score=157.02  Aligned_cols=218  Identities=14%  Similarity=0.118  Sum_probs=154.8

Q ss_pred             EEEeCCCCcceeEEecCCCCEEE-----EEEcCCCCEEEEEeC-CC--eEEEEeCCCCCCccccccCcccceEEEEeccc
Q 012799          133 RLWDLNTQTPMFKCTGHKNWVLC-----IAWSADGKHLVSGSK-AG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPV  204 (456)
Q Consensus       133 ~vwd~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  204 (456)
                      ..++..++..+..+..|......     .+|+|||++|+.++. +|  .|.+||+.+++... ....+...+..+.|+| 
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~sp-   90 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-LTEGRGDNTFGGFLSP-   90 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-CCCSSCBCSSSCEECT-
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-eeeCCCCCccceEEcC-
Confidence            34577778888888877766666     889999999998887 66  48888998887654 3445555555678999 


Q ss_pred             ccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEE--eCCCC-eEEE----------------------EeC
Q 012799          205 HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK--WGGDG-VIYT----------------------GSQ  259 (456)
Q Consensus       205 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~-~l~~----------------------~~~  259 (456)
                          +++.|+.++.++.|++||+.+++.......+...+....  +++++ .++.                      ...
T Consensus        91 ----dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (388)
T 3pe7_A           91 ----DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP  166 (388)
T ss_dssp             ----TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred             ----CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCC
Confidence                999999999999999999999887766665555554444  47888 4432                      123


Q ss_pred             CCcEEEEECCCCeEEEEeecCCcceEEEEecC-cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-
Q 012799          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-  337 (456)
Q Consensus       260 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  337 (456)
                      ++.|.+||+.+++..... .+...+..+.|+| ++                                    ..++.... 
T Consensus       167 ~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg------------------------------------~~l~~~~~~  209 (388)
T 3pe7_A          167 CCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDD------------------------------------STVAFCHEG  209 (388)
T ss_dssp             CEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEE------------------------------------EEEEEEECS
T ss_pred             cceEEEEECCCCceEEee-cCCccccccEECCCCC------------------------------------CEEEEEEec
Confidence            467999999998654443 4556788999999 74                                    33555554 


Q ss_pred             -----CCcEEEEecCCCCCCcccccccc--ccEeEEEECCCCCEEEEEEC-CC----cEEEEeCCCCeEE
Q 012799          338 -----DFTMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASF-DK----SIKLWNGTTGKFV  395 (456)
Q Consensus       338 -----dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~~-dg----~i~iwd~~~~~~~  395 (456)
                           ...|.++|..... .. .+..+.  ..+..++|+|||+.|+..+. ++    .|++||+.+++..
T Consensus       210 ~~~~~~~~l~~~d~~~~~-~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~  277 (388)
T 3pe7_A          210 PHDLVDARMWLINEDGTN-MR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR  277 (388)
T ss_dssp             CTTTSSCSEEEEETTSCC-CE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred             CCCCCcceEEEEeCCCCc-eE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE
Confidence                 3378888865432 22 233333  35788999999998765443 22    3999999988753

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=3.9e-18  Score=168.09  Aligned_cols=258  Identities=14%  Similarity=0.028  Sum_probs=173.0

Q ss_pred             ccccccCCcccEE---------EEEEC--CCCCe-EEEEEC-CCcEEEEeCC--CCcceeEEec-----CCCCEEEEEEc
Q 012799          100 CSATIAGHTEAVL---------SVAFS--PDGRQ-LASGSG-DTTVRLWDLN--TQTPMFKCTG-----HKNWVLCIAWS  159 (456)
Q Consensus       100 ~~~~l~~h~~~V~---------~~~~s--~~~~~-l~~~~~-d~~v~vwd~~--~~~~~~~~~~-----~~~~v~~~~~~  159 (456)
                      ..+.+..|...+.         ...|+  |||+. |+.++. +..|+++++.  +......+..     |...+..++|+
T Consensus        59 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s  138 (662)
T 3azo_A           59 AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL  138 (662)
T ss_dssp             CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE
T ss_pred             CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC
Confidence            3456667766666         66665  99998 776654 5567777765  2033455555     66788999999


Q ss_pred             CCCCEEEEEeCC----------CeEEEEeCCC------CCCcccccc-CcccceEEEEecccccCCCCCEEEEEeCC---
Q 012799          160 ADGKHLVSGSKA----------GELQCWDPQT------GKPSGNPLS-GHKKWITGISWEPVHLNAPCRRFVSASKD---  219 (456)
Q Consensus       160 ~~~~~l~s~~~d----------g~i~vwd~~~------~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---  219 (456)
                      |||+.|++++.+          ..|.+||+.+      ++..  .+. .+...+..++|+|     ||+.|+.++.+   
T Consensus       139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~Sp-----DG~~la~~~~~~~~  211 (662)
T 3azo_A          139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR--ELSDDAHRFVTGPRLSP-----DGRQAVWLAWDHPR  211 (662)
T ss_dssp             TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE--ESSCSCSSEECCCEECT-----TSSEEEEEEECTTC
T ss_pred             CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee--EEEecCCCcccCceECC-----CCCEEEEEECCCCC
Confidence            999999998876          5899999987      4433  344 4556778889999     99999988755   


Q ss_pred             -----CcEEEEECC-CC---eEEEEecCcCccEEEEEeCCCC-eEEEEeCCC--cEEEEECCCCeEEEEeecCCcc----
Q 012799          220 -----GDARIWDVS-LR---KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC--TIKVWETTQGKLIRELKGHGHW----  283 (456)
Q Consensus       220 -----g~i~iwd~~-~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~----  283 (456)
                           ..|++||+. ++   +.......+...+..+.|+|+| .++++..++  .|.+||+.+++.......+...    
T Consensus       212 ~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~  291 (662)
T 3azo_A          212 MPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPL  291 (662)
T ss_dssp             CTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCC
T ss_pred             CCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcc
Confidence                 379999998 56   4444444557889999999999 667777777  6777777677655444332221    


Q ss_pred             ----eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc
Q 012799          284 ----VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (456)
Q Consensus       284 ----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  359 (456)
                          +..++++++                                    +..++++.. +.+++|.+.........+..|
T Consensus       292 w~~~~~~~~~~~~------------------------------------~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~  334 (662)
T 3azo_A          292 WTPGMRWFAPLAN------------------------------------GLIAVVHGK-GAAVLGILDPESGELVDAAGP  334 (662)
T ss_dssp             CSTTCCSEEECTT------------------------------------SCEEEEEBS-SSCEEEEEETTTTEEEECCSS
T ss_pred             ccccCceEeEeCC------------------------------------CEEEEEEEc-CccEEEEEECCCCcEEEecCC
Confidence                233444443                                    556888888 999999543322234556667


Q ss_pred             cccEeEE-EECCCCCEEEEEECCC--cEEEEeCCCCeEEEEEecc
Q 012799          360 QQLVNHV-YFSPDGQWVASASFDK--SIKLWNGTTGKFVAVFRGH  401 (456)
Q Consensus       360 ~~~v~~~-~~sp~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~  401 (456)
                      ...+..+ +++++.-++++++.+.  .|.+||+.+++.......+
T Consensus       335 ~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~  379 (662)
T 3azo_A          335 WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARH  379 (662)
T ss_dssp             CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCC
T ss_pred             CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCC
Confidence            7777777 5544433344555554  4666677777765443444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=1.9e-17  Score=148.18  Aligned_cols=237  Identities=14%  Similarity=0.127  Sum_probs=174.5

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCC------------------------CeEEEEeCCCCCCccccccCcccceEEEEecccc
Q 012799          150 KNWVLCIAWSADGKHLVSGSKA------------------------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH  205 (456)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  205 (456)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++........+......++++|  
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~--  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT--  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT--
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC--
Confidence            4679999999999988888777                        47999999888865433334455788999988  


Q ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCe-EEEEe---------cCcCccEEEEEeCC-CCeE-EEEe-CCCcEEEEECCCCe
Q 012799          206 LNAPCRRFVSASKDGDARIWDVSLRK-CVICL---------SGHTLAVTCVKWGG-DGVI-YTGS-QDCTIKVWETTQGK  272 (456)
Q Consensus       206 ~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~l-~~~~-~dg~i~iwd~~~~~  272 (456)
                         +|+.+++...++.|++||..... .+..+         ..+......++++| ++.+ ++.+ .++.|++|| .+++
T Consensus       101 ---~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~  176 (329)
T 3fvz_A          101 ---DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGK  176 (329)
T ss_dssp             ---TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSC
T ss_pred             ---CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCC
Confidence               88888888889999999986542 34444         23445689999999 6744 4444 589999999 5677


Q ss_pred             EEEEeecCC----------cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEE
Q 012799          273 LIRELKGHG----------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (456)
Q Consensus       273 ~~~~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  342 (456)
                      .+..+....          .....++++++.                                   +..+++...++.|+
T Consensus       177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-----------------------------------g~l~v~d~~~~~I~  221 (329)
T 3fvz_A          177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHL-----------------------------------DQLCVADRENGRIQ  221 (329)
T ss_dssp             EEEEECEECCSSSCCTTEESCEEEEEEETTT-----------------------------------TEEEEEETTTTEEE
T ss_pred             EEEEeccCCCCCCCCCcccCCCcEEEEECCC-----------------------------------CEEEEEECCCCEEE
Confidence            777664322          236778888761                                   34477778899999


Q ss_pred             EEecCCCCCCcccc--ccccccEeEEEECCCCCEEEE-------EECCCcEEEEeCCCCeEEEEEe---cccccEEEEEe
Q 012799          343 LWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVAS-------ASFDKSIKLWNGTTGKFVAVFR---GHVGPVYQIRF  410 (456)
Q Consensus       343 iwd~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~  410 (456)
                      +||..++. ....+  ..+...+..++|+| +..+++       ...++.|++||..+++.+..+.   ++.....++  
T Consensus       222 ~~~~~~G~-~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~i--  297 (329)
T 3fvz_A          222 CFKTDTKE-FVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDI--  297 (329)
T ss_dssp             EEETTTCC-EEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEE--
T ss_pred             EEECCCCc-EEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEE--
Confidence            99976443 33333  34556788999999 433333       3345589999999999998874   566667788  


Q ss_pred             eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                               +++|+|.++++...+++|++|
T Consensus       298 -------------------------a~~~dG~lyvad~~~~~I~~~  318 (329)
T 3fvz_A          298 -------------------------VASEDGTVYIGDAHTNTVWKF  318 (329)
T ss_dssp             -------------------------EECTTSEEEEEESSSCCEEEE
T ss_pred             -------------------------EECCCCCEEEEECCCCEEEEE
Confidence                                     889999888888899999876

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.77  E-value=1.2e-16  Score=159.22  Aligned_cols=166  Identities=13%  Similarity=0.132  Sum_probs=120.3

Q ss_pred             ccccccCCccc-----EEEEEECCCCCeEEEEECC---------CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE
Q 012799          100 CSATIAGHTEA-----VLSVAFSPDGRQLASGSGD---------TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL  165 (456)
Q Consensus       100 ~~~~l~~h~~~-----V~~~~~s~~~~~l~~~~~d---------~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  165 (456)
                      +...+.+|...     ...++|||||++|+.++.+         +.+.+||+.+++.. .+..|...+...+|||||+.|
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~l  126 (740)
T 4a5s_A           48 SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKL  126 (740)
T ss_dssp             EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCE
T ss_pred             eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEE
Confidence            34445555532     3458899999999998875         56779999988744 466778899999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCCCccccccCcccce-----------------EEEEecccccCCCCCEEEEEeCCC--------
Q 012799          166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWI-----------------TGISWEPVHLNAPCRRFVSASKDG--------  220 (456)
Q Consensus       166 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~~~~~~l~~~~~dg--------  220 (456)
                      |.+. ++.|.+|++.+++.......++...+                 ..+.|+|     ||+.|+.++.|.        
T Consensus       127 a~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-----Dg~~la~~~~d~~~v~~~~~  200 (740)
T 4a5s_A          127 AYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-----NGTFLAYAQFNDTEVPLIEY  200 (740)
T ss_dssp             EEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-----TSSEEEEEEEECTTCCEEEE
T ss_pred             EEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC-----CCCEEEEEEEcccCCceEEE
Confidence            9884 68999999988875543333333322                 3488999     999999875321        


Q ss_pred             ----------------------------cEEEEECCC---C---eEEEEec-----CcCccEEEEEeCCCCe-EEEEeC-
Q 012799          221 ----------------------------DARIWDVSL---R---KCVICLS-----GHTLAVTCVKWGGDGV-IYTGSQ-  259 (456)
Q Consensus       221 ----------------------------~i~iwd~~~---~---~~~~~~~-----~~~~~v~~~~~~~~~~-l~~~~~-  259 (456)
                                                  .|++||+.+   +   +......     ++...+..++|+|+|. ++.... 
T Consensus       201 ~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r  280 (740)
T 4a5s_A          201 SFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRR  280 (740)
T ss_dssp             EECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEES
T ss_pred             EeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCC
Confidence                                        488899988   7   3333222     3777899999999993 443322 


Q ss_pred             ---CCcEEEEECCCCe
Q 012799          260 ---DCTIKVWETTQGK  272 (456)
Q Consensus       260 ---dg~i~iwd~~~~~  272 (456)
                         +..|.+||+.+++
T Consensus       281 ~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          281 IQNYSVMDICDYDESS  296 (740)
T ss_dssp             STTEEEEEEEEEETTT
T ss_pred             CCCEEEEEEEECCCCc
Confidence               2369999998876

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.75  E-value=4.5e-16  Score=154.33  Aligned_cols=247  Identities=11%  Similarity=0.072  Sum_probs=164.5

Q ss_pred             CCCCeEEEEECCC-----cEEEEeCCCCcceeEEe------cCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCC
Q 012799          118 PDGRQLASGSGDT-----TVRLWDLNTQTPMFKCT------GHKNWVLCIAWSADGKHLVSGSKAG-----ELQCWDPQT  181 (456)
Q Consensus       118 ~~~~~l~~~~~d~-----~v~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~  181 (456)
                      |+|++++....++     .+.+.+...++....+.      +|...+..++|||||++|+.+..++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            7787776554221     34444444444322221      2434688999999999999776543     899999999


Q ss_pred             CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc----------------EEEEECCCCe----EEEEecCcCc
Q 012799          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD----------------ARIWDVSLRK----CVICLSGHTL  241 (456)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~----------------i~iwd~~~~~----~~~~~~~~~~  241 (456)
                      ++......  ....+..++|+|     ||+.|+.++.++.                |++|++.+++    .+.....+..
T Consensus       161 g~~~~~~~--~~~~~~~~~wsp-----Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~  233 (710)
T 2xdw_A          161 AKELPDVL--ERVKFSCMAWTH-----DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPK  233 (710)
T ss_dssp             TEEEEEEE--EEECSCCEEECT-----TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred             CCCCcccc--cCcccceEEEEe-----CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCe
Confidence            87654222  222366789999     9999999988766                9999998765    2223333556


Q ss_pred             cEEEEEeCCCC-eEEEEeC-----CCcEEEEECCC------Ce-EEEEeecCCcceEEEEecCcceeeeccccCCCCccC
Q 012799          242 AVTCVKWGGDG-VIYTGSQ-----DCTIKVWETTQ------GK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (456)
Q Consensus       242 ~v~~~~~~~~~-~l~~~~~-----dg~i~iwd~~~------~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  308 (456)
                      .+..+.|+|+| .|+.++.     +..|++||+.+      +. ....+..+...+.. .++++                
T Consensus       234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~d----------------  296 (710)
T 2xdw_A          234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNE----------------  296 (710)
T ss_dssp             CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEE----------------
T ss_pred             EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEecc----------------
Confidence            68899999999 5655543     56899999976      43 34445544444443 35555                


Q ss_pred             ChHHHHHHHHhhhhhccCCCCCEEEEEeC----CCcEEEEecCCCCC-Cccccccccc--cEeEEEECCCCCEEEEEECC
Q 012799          309 SPEEMKKAALERYNKIKGNAPERLVSGSD----DFTMFLWEPAVSKQ-PKTRMTGHQQ--LVNHVYFSPDGQWVASASFD  381 (456)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~~~~~~~~--~v~~~~~sp~~~~l~s~~~d  381 (456)
                                          ++.++..+.    .+.|.+||+..... ....+..|..  .+..++|++++.++++...|
T Consensus       297 --------------------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          297 --------------------GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             --------------------TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             --------------------CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence                                344554444    33699999766532 1233444433  68889999888888888888


Q ss_pred             Cc--EEEEeCCCCeEEEEEecccccEEEE
Q 012799          382 KS--IKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       382 g~--i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      +.  |.+|++.+|+.+..+..+.+.+..+
T Consensus       357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~  385 (710)
T 2xdw_A          357 VKNTLQLHDLATGALLKIFPLEVGSVVGY  385 (710)
T ss_dssp             TEEEEEEEETTTCCEEEEECCCSSEEEEE
T ss_pred             CEEEEEEEECCCCCEEEecCCCCceEEEE
Confidence            84  6667877888878888777778777

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.75  E-value=1.3e-15  Score=134.33  Aligned_cols=239  Identities=11%  Similarity=0.046  Sum_probs=172.3

Q ss_pred             CcceeEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799          140 QTPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (456)
Q Consensus       140 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~  218 (456)
                      +..+..+..+.....+++|+|+++ +++++..++.|..|+..++ . . .+..+...+.++++++     ++.++++...
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~-~~~~~~~~~~~l~~~~-----dg~l~v~~~~   88 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-S-PEMHPSHHQNGHCLNK-----QGHLIACSHG   88 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-E-EEESSCSSEEEEEECT-----TCCEEEEETT
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-E-EEECCCCCcceeeECC-----CCcEEEEecC
Confidence            344455556677789999999998 7788888999999999877 2 2 3445667789999998     8888777777


Q ss_pred             CCcEEEEECCCCeEEEEecCc----CccEEEEEeCCCCeEEE-----Ee-------------CCCcEEEEECCCCeEEEE
Q 012799          219 DGDARIWDVSLRKCVICLSGH----TLAVTCVKWGGDGVIYT-----GS-------------QDCTIKVWETTQGKLIRE  276 (456)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~-----~~-------------~dg~i~iwd~~~~~~~~~  276 (456)
                      ++.|.+||..+++........    ...+..++++++|.++.     |+             ..+.|..++.. ++. ..
T Consensus        89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~  166 (296)
T 3e5z_A           89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SA  166 (296)
T ss_dssp             TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EE
T ss_pred             CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EE
Confidence            789999999777754433221    23456799999995444     22             13466667665 443 34


Q ss_pred             eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC---c
Q 012799          277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---K  353 (456)
Q Consensus       277 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~  353 (456)
                      +..+......++++|+                                    ++.+++.+.++.|++||+......   .
T Consensus       167 ~~~~~~~~~gi~~s~d------------------------------------g~~lv~~~~~~~i~~~~~~~~g~~~~~~  210 (296)
T 3e5z_A          167 PIRDRVKPNGLAFLPS------------------------------------GNLLVSDTGDNATHRYCLNARGETEYQG  210 (296)
T ss_dssp             EECCCSSEEEEEECTT------------------------------------SCEEEEETTTTEEEEEEECSSSCEEEEE
T ss_pred             eecCCCCCccEEECCC------------------------------------CCEEEEeCCCCeEEEEEECCCCcCcCCC
Confidence            4445566788999887                                    455777778899999998632222   1


Q ss_pred             cccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeeccccccc
Q 012799          354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS  433 (456)
Q Consensus       354 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~  433 (456)
                      ..+..+...+..++++++|+++++.  ++.|.+||.. ++.+..+..+.. +.++                         
T Consensus       211 ~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~-------------------------  261 (296)
T 3e5z_A          211 VHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNL-------------------------  261 (296)
T ss_dssp             EEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEE-------------------------
T ss_pred             eEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeE-------------------------
Confidence            1223345567789999999976665  8889999975 888888887777 7777                         


Q ss_pred             ceeE-ecCCCeEEEeeCCCceEE
Q 012799          434 LYSW-SADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       434 ~~~~-s~dg~~l~s~s~Dg~v~i  455 (456)
                        +| +|+++.|+.++.++..++
T Consensus       262 --~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          262 --CFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             --EEESTTSCEEEEEETTEEEEE
T ss_pred             --EEECCCCCEEEEEcCCeEEEE
Confidence              77 589999999988876654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=5.1e-17  Score=149.66  Aligned_cols=242  Identities=14%  Similarity=0.079  Sum_probs=159.3

Q ss_pred             EEEeCCCCcceeEEecCCCC-----EEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCCccccccCcccceEEEEeccc
Q 012799          133 RLWDLNTQTPMFKCTGHKNW-----VLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPV  204 (456)
Q Consensus       133 ~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  204 (456)
                      ...|..+++.+..+..+...     +..++|+|||++|+.....   ..|.+||+.+++... ....+......+.|+| 
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~sp-   90 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFIST-   90 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECT-
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECC-
Confidence            34467777777766655433     6788999999998877543   368889998876543 2222222223367888 


Q ss_pred             ccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEE-------------------EEeCCCC-eEEEE-----eC
Q 012799          205 HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTC-------------------VKWGGDG-VIYTG-----SQ  259 (456)
Q Consensus       205 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~-~l~~~-----~~  259 (456)
                          +|+.|+.++.++.|++||+.+++.......+......                   +.++|++ .++.+     ..
T Consensus        91 ----dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~  166 (396)
T 3c5m_A           91 ----DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP  166 (396)
T ss_dssp             ----TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred             ----CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence                9999999999999999999988766555434332222                   3456666 33322     45


Q ss_pred             CCcEEEEECCCCeEEEEeecCCcceEEEEecC-cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (456)
Q Consensus       260 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (456)
                      +..|++||+.+++..... .+...+..+.|+| ++                                    ..++..+.+
T Consensus       167 ~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg------------------------------------~~l~~~~~~  209 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDD------------------------------------STVGFCHEG  209 (396)
T ss_dssp             CEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEE------------------------------------EEEEEEECS
T ss_pred             cceEEEEECCCCcEEeec-cCCcccccceECCCCC------------------------------------CEEEEEecC
Confidence            668999999988765544 3556788899998 53                                    334444332


Q ss_pred             ------CcEEEEecCCCCCCccccccc-cccEeEEEECCCCCEEEEEECC-----CcEEEEeCCCCeEEEEEecccccEE
Q 012799          339 ------FTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASASFD-----KSIKLWNGTTGKFVAVFRGHVGPVY  406 (456)
Q Consensus       339 ------g~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~  406 (456)
                            ..|.+||+.... ........ ...+..++|+|||++|+.++.+     +.|++||+.+++........ . ..
T Consensus       210 ~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~  286 (396)
T 3c5m_A          210 PHDLVDARMWLVNEDGSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS  286 (396)
T ss_dssp             CSSSCSCCCEEEETTSCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE
T ss_pred             CCCCCCceEEEEECCCCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC
Confidence                  468888865433 22222221 3358889999999987776544     44999999888754432211 1 12


Q ss_pred             EEEeeeeeeecCCCCceeeecccccccceeEec-CCCeEEEee
Q 012799          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGS  448 (456)
Q Consensus       407 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~s~s  448 (456)
                       +                           .|+| ||++|++++
T Consensus       287 -~---------------------------~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          287 -H---------------------------LMSNFDGSLMVGDG  301 (396)
T ss_dssp             -E---------------------------EEECSSSSEEEEEE
T ss_pred             -C---------------------------CccCCCCceEEEec
Confidence             4                           8899 999888765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.75  E-value=8.2e-16  Score=135.55  Aligned_cols=241  Identities=9%  Similarity=0.033  Sum_probs=169.2

Q ss_pred             ccccCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799          102 ATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  180 (456)
                      ..+..+.....+++|+|+|+ +++++..++.|..|+..++  ...+..+...+.+++++++|+++++...++.|.+||..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            44555677788999999998 7788888999999999876  66666777889999999999988877777899999998


Q ss_pred             CCCCccccccC----cccceEEEEecccccCCCCCEEEE----Ee-------------CCCcEEEEECCCCeEEEEecCc
Q 012799          181 TGKPSGNPLSG----HKKWITGISWEPVHLNAPCRRFVS----AS-------------KDGDARIWDVSLRKCVICLSGH  239 (456)
Q Consensus       181 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~l~~----~~-------------~dg~i~iwd~~~~~~~~~~~~~  239 (456)
                      +++... ....    ....+..+++.|     +|+.+++    |+             ..+.|..++.. ++ ...+..+
T Consensus        99 ~g~~~~-~~~~~~~~~~~~~~~i~~d~-----~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~  170 (296)
T 3e5z_A           99 GGEWES-IADSFEGKKLNSPNDVCLAP-----DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRD  170 (296)
T ss_dssp             TCCEEE-EECEETTEECCCCCCEEECT-----TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECC
T ss_pred             CCcEEE-EeeccCCCCCCCCCCEEECC-----CCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecC
Confidence            876432 1111    112456788887     8888887    33             13456666655 43 3344455


Q ss_pred             CccEEEEEeCCCC-eEEEEeCCCcEEEEECC-CCeE---EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799          240 TLAVTCVKWGGDG-VIYTGSQDCTIKVWETT-QGKL---IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (456)
Q Consensus       240 ~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (456)
                      ......++|+|++ .+++.+.++.|.+||+. +++.   ...+..+...+..++++++                      
T Consensus       171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~----------------------  228 (296)
T 3e5z_A          171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAG----------------------  228 (296)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTT----------------------
T ss_pred             CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCC----------------------
Confidence            6678899999999 56666778899999987 4544   2233223334556666665                      


Q ss_pred             HHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEE-CCCCCEEEEEECCCcEEEEeCCCCe
Q 012799          315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF-SPDGQWVASASFDKSIKLWNGTTGK  393 (456)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~s~~~dg~i~iwd~~~~~  393 (456)
                                    ++.+++ . ++.|.+||..  ......+..+.. +++++| +|+++.|++++.++ +.-++.++.+
T Consensus       229 --------------G~l~v~-~-~~~v~~~~~~--g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          229 --------------GLIWAS-A-GDGVHVLTPD--GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG  288 (296)
T ss_dssp             --------------SCEEEE-E-TTEEEEECTT--SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred             --------------CCEEEE-c-CCeEEEECCC--CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence                          443444 4 8899999964  334444555556 899999 68999888888764 5566766655


Q ss_pred             E
Q 012799          394 F  394 (456)
Q Consensus       394 ~  394 (456)
                      +
T Consensus       289 ~  289 (296)
T 3e5z_A          289 L  289 (296)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.75  E-value=3.6e-16  Score=154.96  Aligned_cols=244  Identities=14%  Similarity=0.073  Sum_probs=170.0

Q ss_pred             CCcccEEEEEECCCCCeEEEEECCC-----cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCe-------
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGDT-----TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE-------  173 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d~-----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-------  173 (456)
                      +|...+..++|||||++||.+..++     .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            4666799999999999999876543     8999999998876533222 23678999999999999888765       


Q ss_pred             ---------EEEEeCCCCCCcccc---ccCcccceEEEEecccccCCCCCEEEEEeC-----CCcEEEEECCC------C
Q 012799          174 ---------LQCWDPQTGKPSGNP---LSGHKKWITGISWEPVHLNAPCRRFVSASK-----DGDARIWDVSL------R  230 (456)
Q Consensus       174 ---------i~vwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~  230 (456)
                               |.+|++.+++.....   ...+...+..+.|+|     +|++|+.++.     +..|++||+.+      +
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  275 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-----DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-----TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-----CCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence                     999999887632111   122455678899999     9999888765     57899999976      4


Q ss_pred             e-EEEEecCcCccEEEEEeCCCC-eEEEEeCC----CcEEEEECCCCeE--EEEeecCCc--ceEEEEecCcceeeeccc
Q 012799          231 K-CVICLSGHTLAVTCVKWGGDG-VIYTGSQD----CTIKVWETTQGKL--IRELKGHGH--WVNSLALSTEYALRTGAF  300 (456)
Q Consensus       231 ~-~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d----g~i~iwd~~~~~~--~~~~~~~~~--~i~~~~~~~~~~~~~~~~  300 (456)
                      . ....+..+...+.. .|+++| .|+..+..    +.|.+||+.++..  ...+..+..  .+..+.++++        
T Consensus       276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------  346 (710)
T 2xdw_A          276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS--------  346 (710)
T ss_dssp             SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT--------
T ss_pred             ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC--------
Confidence            2 34445555555544 467777 55554443    3699999987641  233433333  5777777754        


Q ss_pred             cCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc--EEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE
Q 012799          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT--MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA  378 (456)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  378 (456)
                                                  +..+++...++.  |.+||+..+. ....+..+...+..+.++|+++.++..
T Consensus       347 ----------------------------~~lv~~~~~~g~~~l~~~~~~~g~-~~~~l~~~~~~v~~~~~s~d~~~l~~~  397 (710)
T 2xdw_A          347 ----------------------------NFLVLCYLHDVKNTLQLHDLATGA-LLKIFPLEVGSVVGYSGQKKDTEIFYQ  397 (710)
T ss_dssp             ----------------------------TEEEEEEEETTEEEEEEEETTTCC-EEEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred             ----------------------------CEEEEEEEECCEEEEEEEECCCCC-EEEecCCCCceEEEEecCCCCCEEEEE
Confidence                                        345778888885  5566654443 334455567788999999998766533


Q ss_pred             -E---CCCcEEEEeCCCCe
Q 012799          379 -S---FDKSIKLWNGTTGK  393 (456)
Q Consensus       379 -~---~dg~i~iwd~~~~~  393 (456)
                       +   ..+.++.||+.+++
T Consensus       398 ~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          398 FTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EECSSCCCEEEEEETTSSS
T ss_pred             EeCCCCCCEEEEEECCCCc
Confidence             2   34789999998877

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.74  E-value=1.3e-15  Score=132.24  Aligned_cols=240  Identities=8%  Similarity=-0.057  Sum_probs=166.7

Q ss_pred             cEEEEEECCCCCeEE-EEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          110 AVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      ...+++++++|++++ +...++.|.+|+..+.........+...+.++++.++++++++.. ++.|.+||...+.... .
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-L  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-C
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-e
Confidence            678999999999777 446788999999765543322223445788999999998666655 8899999987654332 2


Q ss_pred             ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeE-EEEeCCCcEEEEE
Q 012799          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI-YTGSQDCTIKVWE  267 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l-~~~~~dg~i~iwd  267 (456)
                      .......+.++++.+     ++..+++...++.|.+|+..+.............+.++++++++.+ ++...++.|.+||
T Consensus       103 ~~~~~~~p~~i~~~~-----~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~  177 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDT-----QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE  177 (270)
T ss_dssp             CCCSCSSEEEEEECT-----TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             ecCCcCCCcceEECC-----CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence            222335678899988     7887777777889999987655443322233346788999998844 4445578999999


Q ss_pred             CCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecC
Q 012799          268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (456)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  347 (456)
                      ................+..++++++                                    +..+++...++.|.+||..
T Consensus       178 ~~~~~~~~~~~~~~~~p~~i~~d~~------------------------------------g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          178 AESNNQVVLPFTDITAPWGIAVDEA------------------------------------GTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             TTTCCEEECCCSSCCSEEEEEECTT------------------------------------CCEEEEETTTSCEEEECTT
T ss_pred             cCCCceEeecccCCCCceEEEECCC------------------------------------CCEEEEECCCCcEEEEcCC
Confidence            8876654433333356778888876                                    4446666678899999965


Q ss_pred             CCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe
Q 012799          348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (456)
Q Consensus       348 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~  393 (456)
                      .... ......+...+.+++++++|+++++...++.|++++....+
T Consensus       222 ~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          222 STTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CSCC-EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCcc-eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            4332 22222333568999999999988888889999999987644

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.73  E-value=6.5e-17  Score=159.83  Aligned_cols=242  Identities=11%  Similarity=-0.022  Sum_probs=165.3

Q ss_pred             CCcccEEEEEECCCCCeEEEE-----ECCCcEEEEeCCCCcce-eEEecCCCCE--EEEEEcCCCCEEEEEeCCCe----
Q 012799          106 GHTEAVLSVAFSPDGRQLASG-----SGDTTVRLWDLNTQTPM-FKCTGHKNWV--LCIAWSADGKHLVSGSKAGE----  173 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~-----~~d~~v~vwd~~~~~~~-~~~~~~~~~v--~~~~~~~~~~~l~s~~~dg~----  173 (456)
                      +|...+.+++|||||++||.+     +.+..|++||+.+++.+ ..   +...+  ..++|+|||+.|+.++.|..    
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~---~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD---VIEGGKYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC---CBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc---ccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence            577789999999999999944     34568999999998865 21   22222  68999999999999988776    


Q ss_pred             ---------EEEEeCCCCCCccc---cccCcccceEEEEecccccCCCCCEEEEEeCCC----cEEEEECCCCeEEEEec
Q 012799          174 ---------LQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDG----DARIWDVSLRKCVICLS  237 (456)
Q Consensus       174 ---------i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~  237 (456)
                               |++|++.++.....   ....+...+..+.|+|     +|++++.++.++    .|++|+..+++.. .+.
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-----DG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~  268 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-----DGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV  268 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-----TSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-----CCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee
Confidence                     99999988763211   1223456788999999     999998887766    6778876555433 333


Q ss_pred             CcCccEEEEEeCCCCeEEEEeC----CCcEEEEECCCCeE---EEEeecC-CcceEEEEecCcceeeeccccCCCCccCC
Q 012799          238 GHTLAVTCVKWGGDGVIYTGSQ----DCTIKVWETTQGKL---IRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSS  309 (456)
Q Consensus       238 ~~~~~v~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~---~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  309 (456)
                      .+...+....+ +++.++..+.    ++.|.+||+.+++.   ...+..+ ...+..++++ +                 
T Consensus       269 ~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~-----------------  329 (695)
T 2bkl_A          269 KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G-----------------  329 (695)
T ss_dssp             ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T-----------------
T ss_pred             cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C-----------------
Confidence            34444555556 4442444343    57899999987653   3333322 4456667666 3                 


Q ss_pred             hHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc-cccEeEEEECCCCCEEEEEE----CCCcE
Q 012799          310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASAS----FDKSI  384 (456)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~----~dg~i  384 (456)
                                         +..+++...|+..++|.+.........+..+ ...+..++++|+++.++...    ..+.|
T Consensus       330 -------------------~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v  390 (695)
T 2bkl_A          330 -------------------GHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQI  390 (695)
T ss_dssp             -------------------TEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEE
T ss_pred             -------------------CEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence                               3458888889988888654323333334333 56788889999998766332    34789


Q ss_pred             EEEeCCCCeE
Q 012799          385 KLWNGTTGKF  394 (456)
Q Consensus       385 ~iwd~~~~~~  394 (456)
                      ++||+.+++.
T Consensus       391 ~~~d~~~g~~  400 (695)
T 2bkl_A          391 YKTSVSTGKS  400 (695)
T ss_dssp             EEEETTTCCE
T ss_pred             EEEECCCCcE
Confidence            9999988774

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.73  E-value=5.3e-16  Score=153.33  Aligned_cols=245  Identities=14%  Similarity=0.050  Sum_probs=157.6

Q ss_pred             CCCCeEEEEECCC---c--EEEEeCCCCcceeEEe------cCCCCEEEEEEcCCCCEEEE-----EeCCCeEEEEeCCC
Q 012799          118 PDGRQLASGSGDT---T--VRLWDLNTQTPMFKCT------GHKNWVLCIAWSADGKHLVS-----GSKAGELQCWDPQT  181 (456)
Q Consensus       118 ~~~~~l~~~~~d~---~--v~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s-----~~~dg~i~vwd~~~  181 (456)
                      |+|++++....++   .  +.+.+...++....+.      +|...+..++|||||++||.     |+.+..|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            6788777665433   2  4444544444333322      35557899999999999984     34456899999999


Q ss_pred             CCCc-cccccCcccceEEEEecccccCCCCCEEEEEeCCCc-------------EEEEECCCCe----EEEEecCcCccE
Q 012799          182 GKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD-------------ARIWDVSLRK----CVICLSGHTLAV  243 (456)
Q Consensus       182 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~----~~~~~~~~~~~v  243 (456)
                      ++.. ...+...  ....++|+|     +|+.|+.++.|..             |++|++.++.    .+.....+...+
T Consensus       157 g~~~~~~~~~~~--~~~~~~wsp-----Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~  229 (695)
T 2bkl_A          157 GEWSKVDVIEGG--KYATPKWTP-----DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTF  229 (695)
T ss_dssp             CCBCSSCCBSCC--TTCCCEECT-----TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCE
T ss_pred             CCCcCCcccCcc--cccceEEec-----CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEE
Confidence            8865 2112111  126789999     9999999998776             9999998765    343444455678


Q ss_pred             EEEEeCCCC-eEEEEeCCC----cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799          244 TCVKWGGDG-VIYTGSQDC----TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (456)
Q Consensus       244 ~~~~~~~~~-~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (456)
                      ..+.|+|+| .++.++.++    .|++||..+++.. .+..+...+....+ ++                          
T Consensus       230 ~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~--------------------------  281 (695)
T 2bkl_A          230 LQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WK--------------------------  281 (695)
T ss_dssp             EEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ET--------------------------
T ss_pred             EEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cC--------------------------
Confidence            999999999 666666555    6777776555433 33334444444444 33                          


Q ss_pred             hhhhhccCCCCCEEEEEe---CCCcEEEEecCCCCC--Cccccccc-cccEeEEEECCCCCEEEEEECCCcEEEEeCC-C
Q 012799          319 ERYNKIKGNAPERLVSGS---DDFTMFLWEPAVSKQ--PKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNGT-T  391 (456)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~-~  391 (456)
                                +..++.+.   .++.|.+||+.....  ....+..+ ...+..++|+ ++.++++...|+..++|.+. +
T Consensus       282 ----------g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~  350 (695)
T 2bkl_A          282 ----------DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK  350 (695)
T ss_dssp             ----------TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             ----------CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence                      23244433   357899999765532  12223333 4568888888 77788899999988888654 4


Q ss_pred             CeEEEEEecc-cccEEEE
Q 012799          392 GKFVAVFRGH-VGPVYQI  408 (456)
Q Consensus       392 ~~~~~~~~~~-~~~v~~i  408 (456)
                      ++....+..+ .+.+..+
T Consensus       351 g~~~~~l~~~~~~~v~~~  368 (695)
T 2bkl_A          351 GKPVRTVQLPGVGAASNL  368 (695)
T ss_dssp             CCEEEECCCSSSSEECCC
T ss_pred             CCeeEEecCCCCeEEEEe
Confidence            5555555544 4455555

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.73  E-value=5.2e-14  Score=124.15  Aligned_cols=269  Identities=10%  Similarity=0.025  Sum_probs=182.6

Q ss_pred             CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee-EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  184 (456)
                      .....+.++++.++|+++++...++.|.+||.. ++... .+......+..+++.+++++.++...++.|..||.. ++.
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            345678999999999988777678899999987 54332 222344679999999999887777668899999987 554


Q ss_pred             ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE-EecCcCccEEEEEeCCCCeEEEEe-CCCc
Q 012799          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGVIYTGS-QDCT  262 (456)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~-~dg~  262 (456)
                      ...........+.++++.+     ++..+++...++.|..+|.. ++... .+......+.++++++++.++.+. .++.
T Consensus        95 ~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  168 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGL-----NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS  168 (300)
T ss_dssp             EEEECSSTTCCEEEEEECS-----TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             EEecCCCCCCCCccceECC-----CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence            3212222345688888887     78877777768899999987 54442 233345678999999988555544 4678


Q ss_pred             EEEEECCCCeEEEE-eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcE
Q 012799          263 IKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (456)
Q Consensus       263 i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  341 (456)
                      |..||. +++.... .......+..+++.++                                    +..+++....+.|
T Consensus       169 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~------------------------------------g~l~v~~~~~~~i  211 (300)
T 2qc5_A          169 IGRITN-TGKLEEYPLPTNAAAPVGITSGND------------------------------------GALWFVEIMGNKI  211 (300)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTT------------------------------------SSEEEEETTTTEE
T ss_pred             EEEECC-CCcEEEeeCCCCCCCcceEEECCC------------------------------------CCEEEEccCCCEE
Confidence            999998 5554432 2223345677777766                                    4445555566789


Q ss_pred             EEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE-EecccccEEEEEeeeeeeecCCC
Q 012799          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPS  420 (456)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~  420 (456)
                      .+||. .+.........+...+.+++++++|++.++...++.|..||. +++.... +......+.++            
T Consensus       212 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i------------  277 (300)
T 2qc5_A          212 GRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGI------------  277 (300)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCE------------
T ss_pred             EEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCcccee------------
Confidence            99996 332222222334566889999999997776666789999998 4543321 22222334444            


Q ss_pred             CceeeecccccccceeEecCCCeEEEee
Q 012799          421 NFYCVVDMSCCMSLYSWSADSRLLLSGS  448 (456)
Q Consensus       421 ~~~~~~~~~~~~~~~~~s~dg~~l~s~s  448 (456)
                                     +++++|+++++..
T Consensus       278 ---------------~~~~~g~l~v~~~  290 (300)
T 2qc5_A          278 ---------------TFGKDGSVWFALK  290 (300)
T ss_dssp             ---------------EECTTSCEEEECS
T ss_pred             ---------------EeCCCCCEEEEcc
Confidence                           7899998777665

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.73  E-value=1.1e-15  Score=138.04  Aligned_cols=233  Identities=12%  Similarity=0.103  Sum_probs=157.7

Q ss_pred             ccEEEEEECCCCCeEEEEECC---C--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC------------
Q 012799          109 EAVLSVAFSPDGRQLASGSGD---T--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA------------  171 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d---~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------------  171 (456)
                      ..+.+++|+|||++||.++.+   +  .|.+|++.+++....... .. +..++|+|||+.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            568899999999999987753   2  488888887765544443 33 9999999999999887642            


Q ss_pred             ---------------CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC-------cEEEEECCC
Q 012799          172 ---------------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG-------DARIWDVSL  229 (456)
Q Consensus       172 ---------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~  229 (456)
                                     ..|.+||+.+++... .+.. . .+..+.|+|     +| .++++..++       ...+|.+.+
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~-~l~~-~-~~~~~~~sp-----dg-~~~~~~~~~~~~~~~~~~~l~~~d~  207 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIE-EFEK-P-RFSSGIWHR-----DK-IVVNVPHREIIPQYFKFWDIYIWED  207 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEE-EEEE-E-TTCEEEEET-----TE-EEEEEECCCSSCCSSCCEEEEEEET
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEe-eecC-C-CcccccCCC-----Ce-EEEEEecccccccccccccEEEeCC
Confidence                           569999998877522 2222 3 778899998     88 777775542       334444435


Q ss_pred             CeEEEEecCcCccEEEEEeCCCC-eEEEEeCC--------CcEEEEECCCCeEEEEeecCCcceEE-EEecCcceeeecc
Q 012799          230 RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD--------CTIKVWETTQGKLIRELKGHGHWVNS-LALSTEYALRTGA  299 (456)
Q Consensus       230 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~  299 (456)
                      ++.. .+..+ ..+..+  +|+| .++.++.+        ..|.+||  +++.......+...+.. +.|+ +       
T Consensus       208 ~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-d-------  273 (347)
T 2gop_A          208 GKEE-KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-G-------  273 (347)
T ss_dssp             TEEE-EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-T-------
T ss_pred             CceE-EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-C-------
Confidence            5433 33334 455544  8888 66666543        4688888  56555444555666775 7787 6       


Q ss_pred             ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEE
Q 012799          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (456)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~  379 (456)
                                                   + .+++++.++.+++| +. .... ..+..+...|.+++|+|  .++++++
T Consensus       274 -----------------------------g-~~~~~~~~~~~~l~-~~-~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~  318 (347)
T 2gop_A          274 -----------------------------K-VYFTLFEEGSVNLY-IW-DGEI-KPIAKGRHWIMGFDVDE--IVVYLKE  318 (347)
T ss_dssp             -----------------------------E-EEEEEEETTEEEEE-EE-SSSE-EEEECSSSEEEEEEESS--SEEEEEE
T ss_pred             -----------------------------c-EEEEEecCCcEEEE-Ec-CCce-EEEecCCCeEEeeeeeC--cEEEEEc
Confidence                                         3 48889999999999 87 3333 33444577899999999  6777777


Q ss_pred             CCCcE-EEEeCCCCeEEEEEecccc
Q 012799          380 FDKSI-KLWNGTTGKFVAVFRGHVG  403 (456)
Q Consensus       380 ~dg~i-~iwd~~~~~~~~~~~~~~~  403 (456)
                      .++.. .+|.+. ++ ...+..|..
T Consensus       319 ~~~~~~~l~~~~-g~-~~~lt~~n~  341 (347)
T 2gop_A          319 TATRLRELFTWD-GE-EKQLTDYND  341 (347)
T ss_dssp             CSSSCCEEEEES-SS-EEECCCTTS
T ss_pred             CCCChHHheEeC-Cc-EEEeccccH
Confidence            77764 777665 54 334554443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.72  E-value=1.9e-14  Score=129.18  Aligned_cols=238  Identities=11%  Similarity=0.050  Sum_probs=162.0

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC----CeEEE
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA----GELQC  176 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~v  176 (456)
                      ...+.++...+.+++|+|+|++++++..++.|.+||..+++.......+...+.+++++++|+++++...+    +.|.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence            34456677788999999999988888888999999998877655444567889999999999988877666    68999


Q ss_pred             EeCCCCCCccccc-cCcccceEEEEecccccCCCCCEEEEEeC------CCcEEEEECCCCeEEEEecCcCccEEEEEeC
Q 012799          177 WDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLAVTCVKWG  249 (456)
Q Consensus       177 wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  249 (456)
                      ||.+++....... ..+...+.++.++|     ++..+++...      .+.|..+|..+++.... ......+..++|+
T Consensus       117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~-----~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~  190 (333)
T 2dg1_A          117 ATENGDNLQDIIEDLSTAYCIDDMVFDS-----KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALS  190 (333)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECT-----TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEEC
T ss_pred             EeCCCCEEEEEEccCccCCcccceEECC-----CCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEEC
Confidence            9998776532111 12345688999988     7877776553      35677777665444332 2233457889999


Q ss_pred             CCC-eEEEE-eCCCcEEEEECCC-CeEEEEe------ec-CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHh
Q 012799          250 GDG-VIYTG-SQDCTIKVWETTQ-GKLIREL------KG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (456)
Q Consensus       250 ~~~-~l~~~-~~dg~i~iwd~~~-~~~~~~~------~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (456)
                      |++ .++++ +.++.|.+||+.+ +..+..+      .. ....+..++++++                           
T Consensus       191 ~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~---------------------------  243 (333)
T 2dg1_A          191 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD---------------------------  243 (333)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT---------------------------
T ss_pred             CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCC---------------------------
Confidence            998 45544 4578999999864 3322211      00 1134566777665                           


Q ss_pred             hhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccccc------ccEeEEEECCCCCEEEEEECCC
Q 012799          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ------QLVNHVYFSPDGQWVASASFDK  382 (456)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~v~~~~~sp~~~~l~s~~~dg  382 (456)
                               +..+++...++.|.+||.. +. ....+..+.      ..+.+++|+|+++.|+.++.++
T Consensus       244 ---------G~l~v~~~~~~~v~~~d~~-g~-~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          244 ---------DNLYVAMYGQGRVLVFNKR-GY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             ---------CCEEEEEETTTEEEEECTT-SC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             ---------CCEEEEEcCCCEEEEECCC-CC-EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence                     4456666778899999963 32 233332222      2688999999987776665554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.72  E-value=8.7e-15  Score=130.70  Aligned_cols=244  Identities=13%  Similarity=0.081  Sum_probs=171.3

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      .....+++. +++++++...++.|.+||..+++.+.++. .......++++++++..++...++.|.+||..+++.....
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            446777774 45555666667899999999999888885 4567899999988854444448899999999988755322


Q ss_pred             ccCc----ccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeC-C--
Q 012799          189 LSGH----KKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ-D--  260 (456)
Q Consensus       189 ~~~~----~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~-d--  260 (456)
                      ..+.    ......+++ .     ++..+++.. .++.|.++|..+++.+..+... .....+.++++|.+++++. +  
T Consensus       122 ~~g~~~~~~~~p~~i~~-~-----~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~  194 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ-Y-----GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYE  194 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE-E-----TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCT
T ss_pred             EcCCccccCCCcceEEE-E-----CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCcc
Confidence            2221    113445555 2     444444443 4889999999999988777543 3356788999995554443 3  


Q ss_pred             --------CcEEEEECCCCeEEEEeecC-CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799          261 --------CTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (456)
Q Consensus       261 --------g~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (456)
                              +.|.++|..+++....+... ......++++|+                                    +++
T Consensus       195 ~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d------------------------------------~~~  238 (328)
T 3dsm_A          195 GSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT------------------------------------RDT  238 (328)
T ss_dssp             TCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT------------------------------------SCE
T ss_pred             CCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC------------------------------------CCE
Confidence                    68999999999888777543 346788999987                                    444


Q ss_pred             EEEEeCCCcEEEEecCCCCCCccc-cccccccEeEEEECC-CCCEEEEE----ECCCcEEEEeCCCCeEEEEEec
Q 012799          332 LVSGSDDFTMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSP-DGQWVASA----SFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       332 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~sp-~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                      ++++..  .|.+||..+....... ..........++++| ++++.++.    ..++.|.+||.. |+.+..+..
T Consensus       239 lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~  310 (328)
T 3dsm_A          239 LYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV  310 (328)
T ss_dssp             EEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred             EEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence            666544  8999997665532221 222245688999999 56666665    578999999987 999888864

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.72  E-value=3.9e-15  Score=129.00  Aligned_cols=236  Identities=14%  Similarity=0.082  Sum_probs=172.5

Q ss_pred             CCCeEEEEECCCcEEEEeCCCCcceeEEecCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceE
Q 012799          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT  197 (456)
Q Consensus       119 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~  197 (456)
                      .+++|++++.|+.|.+||.++++.+.++..+. ..+.++.++|+|++++  +.++.|..||. +++.+..........+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            46789999999999999999999999988766 5789999999999888  45778999999 78766543333334677


Q ss_pred             EEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEEEec------CcCccEEEEEeCCCC-eEEEEeCCCcEEEEECC
Q 012799          198 GISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLS------GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT  269 (456)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~  269 (456)
                      ++.+.+     +|+.+++.+. ++.+..+|. +++.+..+.      .+......++..++| ++++...++.|..||..
T Consensus        81 ~~~~~~-----dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~  154 (276)
T 3no2_A           81 TARILP-----DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN  154 (276)
T ss_dssp             EEEECT-----TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred             ccEECC-----CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence            888877     9999999887 778888886 666666553      122234456778888 78888889999999998


Q ss_pred             CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC
Q 012799          270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS  349 (456)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  349 (456)
                       |+.+.++.... ...++...++                                    ++.++++..++.|..+|..++
T Consensus       155 -G~~~w~~~~~~-~~~~~~~~~~------------------------------------g~~~v~~~~~~~v~~~d~~tG  196 (276)
T 3no2_A          155 -GQLLNSVKLSG-TPFSSAFLDN------------------------------------GDCLVACGDAHCFVQLNLESN  196 (276)
T ss_dssp             -SCEEEEEECSS-CCCEEEECTT------------------------------------SCEEEECBTTSEEEEECTTTC
T ss_pred             -CCEEEEEECCC-CccceeEcCC------------------------------------CCEEEEeCCCCeEEEEeCcCC
Confidence             99998887643 3344455554                                    566888888889999996655


Q ss_pred             CCCccccccc------cccEeEEEECCCCCEEEEEECC--------CcEEEEeC-CCCeEEEEEeccc
Q 012799          350 KQPKTRMTGH------QQLVNHVYFSPDGQWVASASFD--------KSIKLWNG-TTGKFVAVFRGHV  402 (456)
Q Consensus       350 ~~~~~~~~~~------~~~v~~~~~sp~~~~l~s~~~d--------g~i~iwd~-~~~~~~~~~~~~~  402 (456)
                      +... .+..+      -..+..++..++|+++++....        +..+++++ .+|+.+..+..+.
T Consensus       197 ~~~w-~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~  263 (276)
T 3no2_A          197 RIVR-RVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKV  263 (276)
T ss_dssp             CEEE-EEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTT
T ss_pred             cEEE-EecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcc
Confidence            5432 23221      1347889999999988887421        23355555 5788888877543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.69  E-value=1.2e-14  Score=126.12  Aligned_cols=234  Identities=6%  Similarity=-0.060  Sum_probs=157.1

Q ss_pred             CEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC
Q 012799          152 WVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR  230 (456)
Q Consensus       152 ~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  230 (456)
                      ...+++++++|++++ +.+.++.|.+|+..++.... ....+...+.++++.+     +++.+++.. ++.|.+||....
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~-----~g~l~v~~~-~~~i~~~d~~~~   97 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDG-----AGTVYVTDF-NNRVVTLAAGSN   97 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CCCCSCCSCCCEEECT-----TCCEEEEET-TTEEEEECTTCS
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-EeeCCcCCcceeEECC-----CCCEEEEcC-CCEEEEEeCCCc
Confidence            678999999998776 44678899999986654322 1222334577888887     777665555 889999998766


Q ss_pred             eEEEEecCcCccEEEEEeCCCCe-EEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCC
Q 012799          231 KCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS  309 (456)
Q Consensus       231 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  309 (456)
                      ............+.+++++++|. +++...++.|.+|+..+................++++++                 
T Consensus        98 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~-----------------  160 (270)
T 1rwi_B           98 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS-----------------  160 (270)
T ss_dssp             CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTT-----------------
T ss_pred             eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCC-----------------
Confidence            54322222335789999999984 444456788999987655443322222334566777765                 


Q ss_pred             hHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799          310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (456)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  389 (456)
                                         +..+++...++.|.+||...... ......+...+..++++++|.++++...++.|.+|+.
T Consensus       161 -------------------g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~  220 (270)
T 1rwi_B          161 -------------------GNVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA  220 (270)
T ss_dssp             -------------------CCEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred             -------------------CCEEEEECCCCEEEEEecCCCce-EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence                               44466666788999999654432 2222233356889999999987777777889999998


Q ss_pred             CCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       390 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ...........+...+.++                           +++++|+++++...+++|+++
T Consensus       221 ~~~~~~~~~~~~~~~p~~i---------------------------~~~~~g~l~v~~~~~~~v~~~  260 (270)
T 1rwi_B          221 GSTTSTVLPFTGLNTPLAV---------------------------AVDSDRTVYVADRGNDRVVKL  260 (270)
T ss_dssp             TCSCCEECCCCSCSCEEEE---------------------------EECTTCCEEEEEGGGTEEEEE
T ss_pred             CCCcceeeccCCCCCceeE---------------------------EECCCCCEEEEECCCCEEEEE
Confidence            6654333222233456677                           889999988998899999863

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.68  E-value=1.5e-14  Score=129.11  Aligned_cols=253  Identities=9%  Similarity=-0.009  Sum_probs=169.4

Q ss_pred             CCCcEEEEeCCCCcceeEEe------cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEe
Q 012799          128 GDTTVRLWDLNTQTPMFKCT------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISW  201 (456)
Q Consensus       128 ~d~~v~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~  201 (456)
                      .+++|.++|..+++....+.      ........+.+. +++..++...++.|.+||..+++.+...  ........+++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i--~~~~~p~~i~~   91 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI--TGFTSPRYIHF   91 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE--ECCSSEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc--CCCCCCcEEEE
Confidence            37899999999887654431      122446778774 4555556666799999999999876533  23456788888


Q ss_pred             cccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC-----ccEEEEEeCCCCeEEEEe--CCCcEEEEECCCCeEE
Q 012799          202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-----LAVTCVKWGGDGVIYTGS--QDCTIKVWETTQGKLI  274 (456)
Q Consensus       202 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~  274 (456)
                      ++     ++..+++...++.|.+||..+++....+....     .....+++ .++.++++.  .++.|.++|+.+++.+
T Consensus        92 ~~-----~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~  165 (328)
T 3dsm_A           92 LS-----DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVV  165 (328)
T ss_dssp             EE-----TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred             eC-----CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence            77     77444444478999999999998877665322     13456666 455666665  4889999999999988


Q ss_pred             EEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC----------CcEEEE
Q 012799          275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD----------FTMFLW  344 (456)
Q Consensus       275 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~iw  344 (456)
                      ..+... .....+.++++                                    +++++++..+          +.|.++
T Consensus       166 ~~i~~g-~~p~~i~~~~d------------------------------------G~l~v~~~~~~~~~~~~~~~~~v~~i  208 (328)
T 3dsm_A          166 DELTIG-IQPTSLVMDKY------------------------------------NKMWTITDGGYEGSPYGYEAPSLYRI  208 (328)
T ss_dssp             EEEECS-SCBCCCEECTT------------------------------------SEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred             EEEEcC-CCccceEEcCC------------------------------------CCEEEEECCCccCCccccCCceEEEE
Confidence            877643 23456666666                                    3335554443          789999


Q ss_pred             ecCCCCCCccccc-cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE--EecccccEEEEEeeeeeeecCCCC
Q 012799          345 EPAVSKQPKTRMT-GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV--FRGHVGPVYQIRFELIYCFRYPSN  421 (456)
Q Consensus       345 d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~~~~  421 (456)
                      |..+.+ ....+. ........++|+|++++|+++..  .|.+||..+++....  +..+......+             
T Consensus       209 d~~t~~-v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi-------------  272 (328)
T 3dsm_A          209 DAETFT-VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGL-------------  272 (328)
T ss_dssp             ETTTTE-EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEE-------------
T ss_pred             ECCCCe-EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEE-------------
Confidence            976543 222222 11236789999999999887754  899999988875321  11112445666             


Q ss_pred             ceeeecccccccceeEec-CCCeEEEe----eCCCceEEC
Q 012799          422 FYCVVDMSCCMSLYSWSA-DSRLLLSG----SKDSTLKVT  456 (456)
Q Consensus       422 ~~~~~~~~~~~~~~~~s~-dg~~l~s~----s~Dg~v~iW  456 (456)
                                    +++| +++++++.    ..++.|.+|
T Consensus       273 --------------~vdp~~g~lyva~~~~y~~~~~V~v~  298 (328)
T 3dsm_A          273 --------------TVNPNNGEVYVADAIDYQQQGIVYRY  298 (328)
T ss_dssp             --------------EECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred             --------------EEcCCCCeEEEEcccccccCCEEEEE
Confidence                          7898 45555555    567777764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.67  E-value=4.1e-13  Score=121.50  Aligned_cols=265  Identities=12%  Similarity=-0.002  Sum_probs=175.1

Q ss_pred             EECCCCCeEEEEEC--CC---cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeC
Q 012799          115 AFSPDGRQLASGSG--DT---TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDP  179 (456)
Q Consensus       115 ~~s~~~~~l~~~~~--d~---~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~i~vwd~  179 (456)
                      ...|+++++++...  ..   +|.++|..+++.+..+.....+  .++++|||++++++.          .++.|.+||.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            34467776666543  22   7899999999988877754444  999999999999886          3678999999


Q ss_pred             CCCCCccccccC------cccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEE-ecCcCccEEEEEeCC
Q 012799          180 QTGKPSGNPLSG------HKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGG  250 (456)
Q Consensus       180 ~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~  250 (456)
                      .+.+.......+      +......+.|+|     +|++++++..  ++.|.++| .+++.+.. +... .   ++.+.+
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-----DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~  174 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTP-----NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHP  174 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECC-----CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEe
Confidence            887665432221      012345788888     9999998874  47899999 99988777 5432 2   234445


Q ss_pred             CC--eEEEEeCCCcEEEEECCCCeEEEEeec-----CCcce-EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhh
Q 012799          251 DG--VIYTGSQDCTIKVWETTQGKLIRELKG-----HGHWV-NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (456)
Q Consensus       251 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (456)
                      ++  .+++.+.||.+.++|. +++.......     ...++ ....+.++                              
T Consensus       175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~------------------------------  223 (373)
T 2mad_H          175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK------------------------------  223 (373)
T ss_pred             CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec------------------------------
Confidence            44  6677888999999999 8776633221     11110 01111221                              


Q ss_pred             hccCCCCCEEEEEeCCCcEEEEecCCCCCCc-cccc----------cccccEeEEEECCCCCEEEEEEC----------C
Q 012799          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPK-TRMT----------GHQQLVNHVYFSPDGQWVASASF----------D  381 (456)
Q Consensus       323 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~----------~~~~~v~~~~~sp~~~~l~s~~~----------d  381 (456)
                            +..++..+..+.+.+.|+....... ..+.          ........++++|+++.++.+..          .
T Consensus       224 ------~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~  297 (373)
T 2mad_H          224 ------SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAA  297 (373)
T ss_pred             ------CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCC
Confidence                  2223334467889998875432111 1110          01122445789999988777653          3


Q ss_pred             CcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEee-CCCceEEC
Q 012799          382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVT  456 (456)
Q Consensus       382 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s-~Dg~v~iW  456 (456)
                      +.|.++|..+++.+..+... ....++                           +|+|||+ .++++. .++.|.|+
T Consensus       298 ~~V~VID~~t~~vv~~i~~g-~~p~~i---------------------------~~s~Dg~~~l~v~~~~~~~V~Vi  346 (373)
T 2mad_H          298 KEVTSVTGLVGQTSSQISLG-HDVDAI---------------------------SVAQDGGPDLYALSAGTEVLHIY  346 (373)
T ss_pred             CeEEEEECCCCEEEEEEECC-CCcCeE---------------------------EECCCCCeEEEEEcCCCCeEEEE
Confidence            57999999999998888633 346677                           8999999 777777 48888764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.65  E-value=7.9e-13  Score=125.69  Aligned_cols=257  Identities=16%  Similarity=0.083  Sum_probs=176.0

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCC--CCcceeEEecCCCCEEEEEEc----CCCCEEEEEeC-CC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWS----ADGKHLVSGSK-AG  172 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~s~~~-dg  172 (456)
                      .+.++.. ...+..+.|+|||+++++++.|+.|.+||+.  +.+.+.++... .....++|+    |||++++++.. ++
T Consensus       189 v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~  266 (567)
T 1qks_A          189 IKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPP  266 (567)
T ss_dssp             EEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred             EEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCC
Confidence            3444443 3356789999999999999999999999995  77777777643 346899999    69998887765 58


Q ss_pred             eEEEEeCCCCCCccccccC---------cc-----------------------cc----------------------eEE
Q 012799          173 ELQCWDPQTGKPSGNPLSG---------HK-----------------------KW----------------------ITG  198 (456)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~---------~~-----------------------~~----------------------v~~  198 (456)
                      .|.++|..+.+.+......         |.                       +.                      ...
T Consensus       267 ~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d  346 (567)
T 1qks_A          267 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHD  346 (567)
T ss_dssp             EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEE
T ss_pred             eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccC
Confidence            9999998887654321110         00                       01                      112


Q ss_pred             EEecccccCCCCCEEEEEe-CCCcEEEEECCCCeEEEEecC-----cCccEEEEEeCCCC-eEE-EEe-CCCcEEEEECC
Q 012799          199 ISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSG-----HTLAVTCVKWGGDG-VIY-TGS-QDCTIKVWETT  269 (456)
Q Consensus       199 ~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~l~-~~~-~dg~i~iwd~~  269 (456)
                      +.|+|     ++++++++. .++.|.++|..+++.+..+..     |.+.-..+ ++|++ .++ ++. .++.|.++|..
T Consensus       347 ~~~~p-----dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          347 GGLDG-----SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             EEECT-----TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             ceECC-----CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCC
Confidence            33444     888887665 578999999999987766643     32211122 57764 444 443 46899999998


Q ss_pred             C-------CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-----
Q 012799          270 Q-------GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-----  337 (456)
Q Consensus       270 ~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----  337 (456)
                      +       .+.++++......-..+..+|+                                    +.++++...     
T Consensus       421 ~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~------------------------------------~~~l~v~~~~~~~~  464 (567)
T 1qks_A          421 PEGHPDNAWKILDSFPALGGGSLFIKTHPN------------------------------------SQYLYVDATLNPEA  464 (567)
T ss_dssp             TTTCTTTBTSEEEEEECSCSCCCCEECCTT------------------------------------CSEEEEECTTCSSH
T ss_pred             CCCCccccCEEEEEEecCCCCCEEEEeCCC------------------------------------CCeEEEecCCCCCc
Confidence            7       5677777755443344666776                                    455666552     


Q ss_pred             --CCcEEEEecCCC-----CCCccccc--------cccccEeEEEECCCCCEEEEEE-----CCCcEEEEeCCCCeEEEE
Q 012799          338 --DFTMFLWEPAVS-----KQPKTRMT--------GHQQLVNHVYFSPDGQWVASAS-----FDKSIKLWNGTTGKFVAV  397 (456)
Q Consensus       338 --dg~i~iwd~~~~-----~~~~~~~~--------~~~~~v~~~~~sp~~~~l~s~~-----~dg~i~iwd~~~~~~~~~  397 (456)
                        ...|.++|+.+.     ......+.        .....+..+.|+|+|+.+..+.     .++.|.|+|.++++++..
T Consensus       465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~  544 (567)
T 1qks_A          465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHV  544 (567)
T ss_dssp             HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred             ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEE
Confidence              458999998765     22212221        1235688999999999877653     379999999999999888


Q ss_pred             Eec
Q 012799          398 FRG  400 (456)
Q Consensus       398 ~~~  400 (456)
                      ++.
T Consensus       545 i~~  547 (567)
T 1qks_A          545 IKD  547 (567)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            874

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.65  E-value=1.5e-14  Score=143.92  Aligned_cols=246  Identities=13%  Similarity=0.049  Sum_probs=154.4

Q ss_pred             CCCCCeEEEEECCCc---EEEEe--CC---CCcceeEE------ecCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEE
Q 012799          117 SPDGRQLASGSGDTT---VRLWD--LN---TQTPMFKC------TGHKNWVLCIAWSADGKHLVSGSKA-----GELQCW  177 (456)
Q Consensus       117 s~~~~~l~~~~~d~~---v~vwd--~~---~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~vw  177 (456)
                      +|+|++++....++.   -.+|.  ..   .++....+      .+|...+..++|||||++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            389998887664432   44554  43   33322221      1233468899999999999887654     369999


Q ss_pred             eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc--------------EEEEECCCCe----EEEEecCc
Q 012799          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD--------------ARIWDVSLRK----CVICLSGH  239 (456)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~--------------i~iwd~~~~~----~~~~~~~~  239 (456)
                      |+.+++....  ..+...+..++|+|     + +.|+.++.++.              |++|++.++.    .+.....+
T Consensus       195 dl~tg~~~~~--~~~~~~~~~~~wsp-----D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~  266 (741)
T 1yr2_A          195 GVADGKPLAD--ELKWVKFSGLAWLG-----N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL  266 (741)
T ss_dssp             ETTTCCEEEE--EEEEEESCCCEEST-----T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred             ECCCCCCCCc--cCCCceeccEEEEC-----C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC
Confidence            9999886431  11122235678888     8 88888877654              8999997664    23222333


Q ss_pred             CccEEEEEeCCCC-eEEEEeCC-----CcEEEEECCCC--eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChH
Q 012799          240 TLAVTCVKWGGDG-VIYTGSQD-----CTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (456)
Q Consensus       240 ~~~v~~~~~~~~~-~l~~~~~d-----g~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (456)
                      ...+..+.|+|+| .++..+.+     ..|++||+.++  +....+..+........ +++                   
T Consensus       267 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~d-------------------  326 (741)
T 1yr2_A          267 PKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGV-------------------  326 (741)
T ss_dssp             TTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEE-------------------
T ss_pred             CeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ecc-------------------
Confidence            3468899999999 66665543     37999999876  31344444443333332 244                   


Q ss_pred             HHHHHHHhhhhhccCCCCCEEEEEeC----CCcEEEEecCCCC-CCccccccccccEeEEEECCCCCEEEEEECCCcEEE
Q 012799          312 EMKKAALERYNKIKGNAPERLVSGSD----DFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL  386 (456)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i  386 (456)
                                       ++.|+..+.    ++.|.+||+.... .....+..+...+..++++ ++.++++...||..+|
T Consensus       327 -----------------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l  388 (741)
T 1yr2_A          327 -----------------GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV  388 (741)
T ss_dssp             -----------------TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred             -----------------CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence                             445666554    3459999976542 2333344555567778887 6677888888998777


Q ss_pred             EeCC-CCeEEEEEec-ccccEEEE
Q 012799          387 WNGT-TGKFVAVFRG-HVGPVYQI  408 (456)
Q Consensus       387 wd~~-~~~~~~~~~~-~~~~v~~i  408 (456)
                      |.+. +++....+.. +.+.+..+
T Consensus       389 ~~~~~~g~~~~~l~~~~~~~v~~~  412 (741)
T 1yr2_A          389 LAFDLDGKPAGAVSLPGIGSASGL  412 (741)
T ss_dssp             EEEETTSCEEEECBCSSSCEEEEE
T ss_pred             EEEeCCCCceeeccCCCCeEEEEe
Confidence            7544 4666666654 35567777

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.65  E-value=1.6e-14  Score=143.74  Aligned_cols=244  Identities=16%  Similarity=0.073  Sum_probs=161.1

Q ss_pred             CCcccEEEEEECCCCCeEEEEECC-----CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCe-------
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGD-----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE-------  173 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d-----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-------  173 (456)
                      +|...+..++|||||++||.++.+     ..|++||+.+++.+... .+...+..++|+|| +.|+.++.++.       
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            455578999999999999987643     36999999998865432 12222357899999 99998877654       


Q ss_pred             -------EEEEeCCCCCCcccc-c--cCcccceEEEEecccccCCCCCEEEEEeCCC-----cEEEEECCCC--eEEEEe
Q 012799          174 -------LQCWDPQTGKPSGNP-L--SGHKKWITGISWEPVHLNAPCRRFVSASKDG-----DARIWDVSLR--KCVICL  236 (456)
Q Consensus       174 -------i~vwd~~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~--~~~~~~  236 (456)
                             |.+|++.++...... .  ..+...+..+.|+|     +|++++..+.++     .|++||+.++  ++...+
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-----DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l  312 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-----DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL  312 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-----TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-----CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence                   899999776532111 2  22333588899999     999888877544     8999999876  313444


Q ss_pred             cCcCccEEEEEeCCCC-eEEEEeC----CCcEEEEECCCC--eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCC
Q 012799          237 SGHTLAVTCVKWGGDG-VIYTGSQ----DCTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS  309 (456)
Q Consensus       237 ~~~~~~v~~~~~~~~~-~l~~~~~----dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  309 (456)
                      ..+...+....+ ++| .|+..+.    ++.|.+||+.++  +....+..+...+..+.+. .                 
T Consensus       313 ~~~~~~~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~-----------------  373 (741)
T 1yr2_A          313 IPDLKAQWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G-----------------  373 (741)
T ss_dssp             ECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B-----------------
T ss_pred             cCCCCceEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C-----------------
Confidence            444444444433 666 6666655    345999999874  3344444444455566655 2                 


Q ss_pred             hHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc-ccccEeEEEECCCCCEEEEE----ECCCcE
Q 012799          310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASA----SFDKSI  384 (456)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~----~~dg~i  384 (456)
                                         +..+++...|+..++|.+.........+.. +...+..+.++|+++.|+..    ...+.|
T Consensus       374 -------------------~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i  434 (741)
T 1yr2_A          374 -------------------NRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATV  434 (741)
T ss_dssp             -------------------TEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEE
T ss_pred             -------------------CEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence                               345788888988777765422233333333 35678899999998765532    234789


Q ss_pred             EEEeCCCCeE
Q 012799          385 KLWNGTTGKF  394 (456)
Q Consensus       385 ~iwd~~~~~~  394 (456)
                      ++||+.+++.
T Consensus       435 ~~~d~~tg~~  444 (741)
T 1yr2_A          435 LALDPATAKT  444 (741)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEECCCCcE
Confidence            9999988773

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.65  E-value=7.8e-13  Score=116.46  Aligned_cols=236  Identities=12%  Similarity=0.068  Sum_probs=158.9

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC
Q 012799          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (456)
Q Consensus       148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  227 (456)
                      .+...+.++++.++|+++++...++.|.+||.. ++............+.++++.+     ++..+++...++.|..||.
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~   85 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-----DGEVWFTENAANKIGRITK   85 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECT
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-----CCCEEEeCCCCCeEEEECC
Confidence            355679999999999977776668899999988 5543212223456788899887     7887777777889999998


Q ss_pred             CCCeEEEEecCcCccEEEEEeCCCCeEEEE-eCCCcEEEEECCCCeEEEE-eecCCcceEEEEecCcceeeeccccCCCC
Q 012799          228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTG-SQDCTIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (456)
Q Consensus       228 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  305 (456)
                      ........+......+.++++++++.++.+ ..++.|..||. +++.... .......+..+++.++             
T Consensus        86 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~-------------  151 (299)
T 2z2n_A           86 KGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD-------------  151 (299)
T ss_dssp             TSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT-------------
T ss_pred             CCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC-------------
Confidence            633222222334567899999998855444 45788999998 5544332 2223455777887776             


Q ss_pred             ccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEE
Q 012799          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK  385 (456)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~  385 (456)
                                             +..+++...++.|..||. .+.........+...+..++++++|++.++...++.|.
T Consensus       152 -----------------------g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  207 (299)
T 2z2n_A          152 -----------------------NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIG  207 (299)
T ss_dssp             -----------------------SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             -----------------------CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence                                   344666666789999996 33322111233445688999999999777766788999


Q ss_pred             EEeCCCCeEEEE-EecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799          386 LWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       386 iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                      +||. +++.... ...+...+.++                           +++++|+++++...++.|..
T Consensus       208 ~~~~-~g~~~~~~~~~~~~~~~~i---------------------------~~~~~g~l~v~~~~~~~i~~  250 (299)
T 2z2n_A          208 RITT-SGEITEFKIPTPNARPHAI---------------------------TAGAGIDLWFTEWGANKIGR  250 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEE---------------------------EECSTTCEEEEETTTTEEEE
T ss_pred             EECC-CCcEEEEECCCCCCCceeE---------------------------EECCCCCEEEeccCCceEEE
Confidence            9998 6664332 22234556677                           67777776666545555554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.65  E-value=4.3e-13  Score=127.52  Aligned_cols=258  Identities=13%  Similarity=0.003  Sum_probs=176.4

Q ss_pred             CCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCCCccccccCcccc
Q 012799          118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ--TGKPSGNPLSGHKKW  195 (456)
Q Consensus       118 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~  195 (456)
                      |.+.++++...+++|.++|..+++.+.++.. ...+..+.|+|||+++++++.|+.|.+||+.  +++.+.....  ...
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~  241 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSE  241 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCC
Confidence            4455667777889999999999998888864 3457799999999999999999999999996  6655543222  223


Q ss_pred             eEEEEec----ccccCCCCCEEEEEeC-CCcEEEEECCCCeEEEEecCc-----------CccEEEEEeCCCC--eEEEE
Q 012799          196 ITGISWE----PVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGH-----------TLAVTCVKWGGDG--VIYTG  257 (456)
Q Consensus       196 v~~~~~~----~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~--~l~~~  257 (456)
                      ...++|+    |     +|++++++.. ++.|.++|..+.+.+..+...           ...+..+..++++  .++..
T Consensus       242 P~~ia~s~~~~p-----DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~  316 (567)
T 1qks_A          242 ARSIETSKMEGW-----EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV  316 (567)
T ss_dssp             EEEEEECCSTTC-----TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             CceeEEccccCC-----CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence            5688888    6     8888877665 589999999999888776421           1257788888876  55556


Q ss_pred             eCCCcEEEEECCCCeEEE--EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE-
Q 012799          258 SQDCTIKVWETTQGKLIR--ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-  334 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  334 (456)
                      ..+|.|.++|....+.+.  .+. .......+.|+|+                                    ++++++ 
T Consensus       317 ~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pd------------------------------------gr~~~va  359 (567)
T 1qks_A          317 KETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGS------------------------------------HRYFITA  359 (567)
T ss_dssp             TTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTT------------------------------------SCEEEEE
T ss_pred             cCCCeEEEEecCCCccceeeeee-ccccccCceECCC------------------------------------CCEEEEE
Confidence            667999999998754322  222 2334556778777                                    444544 


Q ss_pred             EeCCCcEEEEecCCCCCCcccc----ccccccEeEEEECCCCCE-EEEEE-CCCcEEEEeCCC-------CeEEEEEecc
Q 012799          335 GSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNHVYFSPDGQW-VASAS-FDKSIKLWNGTT-------GKFVAVFRGH  401 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~-l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~  401 (456)
                      ...++.|.++|+.+.+......    ..|.+.-..+ ++|++.. .+++. .++.|.++|..+       .+.++++...
T Consensus       360 ~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~  438 (567)
T 1qks_A          360 ANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL  438 (567)
T ss_dssp             EGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred             eCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC
Confidence            4568899999987654221111    1233211122 5887444 44543 468999999987       5566766654


Q ss_pred             cccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEee
Q 012799          402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS  448 (456)
Q Consensus       402 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s  448 (456)
                      ...-..+                           ..+|++++|....
T Consensus       439 g~g~~~i---------------------------~~~p~~~~l~v~~  458 (567)
T 1qks_A          439 GGGSLFI---------------------------KTHPNSQYLYVDA  458 (567)
T ss_dssp             CSCCCCE---------------------------ECCTTCSEEEEEC
T ss_pred             CCCCEEE---------------------------EeCCCCCeEEEec
Confidence            3221223                           6689998887755

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=9.2e-14  Score=120.35  Aligned_cols=192  Identities=10%  Similarity=0.011  Sum_probs=144.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCccccccCcc-cceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc
Q 012799          161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH  239 (456)
Q Consensus       161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  239 (456)
                      .+++|++++.++.|.+||.++|+.+.+ +..+. ..+.++.+.|     +|+.++  +.++.|+.||. +++.+..+..+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~-~~~~~~~~~~~~~~~p-----dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~   74 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWE-YPLEKGWECNSVAATK-----AGEILF--SYSKGAKMITR-DGRELWNIAAP   74 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEE-EECCTTCCCCEEEECT-----TSCEEE--ECBSEEEEECT-TSCEEEEEECC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEE-eCCCccCCCcCeEECC-----CCCEEE--eCCCCEEEECC-CCCEEEEEcCC
Confidence            467899999999999999999988763 33333 4678888888     888888  45778999999 88888888764


Q ss_pred             -CccEEEEEeCCCC-eEEEEeC-CCcEEEEECCCCeEEEEeecCC------cceEEEEecCcceeeeccccCCCCccCCh
Q 012799          240 -TLAVTCVKWGGDG-VIYTGSQ-DCTIKVWETTQGKLIRELKGHG------HWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (456)
Q Consensus       240 -~~~v~~~~~~~~~-~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (456)
                       ...+.++.+.++| .+++.+. ++.+..+|. +++.+..+....      .....++..+                   
T Consensus        75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-------------------  134 (276)
T 3no2_A           75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-------------------  134 (276)
T ss_dssp             TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-------------------
T ss_pred             CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-------------------
Confidence             3578889999999 6666666 778888885 677777664211      1112222222                   


Q ss_pred             HHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                                       +++++++...++.|..||.. ++ .+..+... ..+.++.+.++|+++++++.+++|..+|..
T Consensus       135 -----------------~G~~lv~~~~~~~v~~~d~~-G~-~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          135 -----------------KGNYLVPLFATSEVREIAPN-GQ-LLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             -----------------TSCEEEEETTTTEEEEECTT-SC-EEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             -----------------CCCEEEEecCCCEEEEECCC-CC-EEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence                             37789999999999999965 44 34434332 345678889999999999988999999999


Q ss_pred             CCeEEEEEecc
Q 012799          391 TGKFVAVFRGH  401 (456)
Q Consensus       391 ~~~~~~~~~~~  401 (456)
                      +|+.+..+..+
T Consensus       195 tG~~~w~~~~~  205 (276)
T 3no2_A          195 SNRIVRRVNAN  205 (276)
T ss_dssp             TCCEEEEEEGG
T ss_pred             CCcEEEEecCC
Confidence            99999988744

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.63  E-value=3e-13  Score=120.59  Aligned_cols=272  Identities=14%  Similarity=0.048  Sum_probs=179.5

Q ss_pred             EEECCCCCeEEEEEC-----CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEe
Q 012799          114 VAFSPDGRQLASGSG-----DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWD  178 (456)
Q Consensus       114 ~~~s~~~~~l~~~~~-----d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~i~vwd  178 (456)
                      ....|+++.++....     ++.|.+.|..+++.+.++.....+ . ++++|||++++++.          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            455788888887765     679999999999999888765555 4 99999999888775          367899999


Q ss_pred             CCCCCCccccccCc------ccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799          179 PQTGKPSGNPLSGH------KKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (456)
Q Consensus       179 ~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  250 (456)
                      ..+++....+..+.      ......+.++|     +|++++++..  ++.|.++|+.+++.+.++....  .  ....|
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-----DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~--~~~~P  186 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTP-----DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C--YHIFP  186 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECT-----TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcC-----CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c--ceeec
Confidence            99988765432221      12345678888     9999888864  6899999999999988885322  1  12224


Q ss_pred             CC--eEEEEeCCCcEEEEECCC-CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799          251 DG--VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (456)
Q Consensus       251 ~~--~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (456)
                      .+  .+++.+.||.+.+.++.+ ++........        +.++.....          ..            ......
T Consensus       187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~--------~~~~~~~~~----------~~------------~~~~~~  236 (386)
T 3sjl_D          187 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV--------FHPEDEFLI----------NH------------PAYSQK  236 (386)
T ss_dssp             EETTEEEEEETTSCEEEEECCSSSCCEEEECCC--------CSCTTSCBC----------SC------------CEEETT
T ss_pred             CCCceeEEECCCCCEEEEECCCCCeEEEeecce--------ecccccccc----------cc------------ceeEcC
Confidence            33  677889999999999976 5543211100        011100000          00            000011


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCC-ccccc----------cccccEeEEEECCCCCEEEEEEC----------CCcEEE
Q 012799          328 APERLVSGSDDFTMFLWEPAVSKQP-KTRMT----------GHQQLVNHVYFSPDGQWVASASF----------DKSIKL  386 (456)
Q Consensus       328 ~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~----------~~~~~v~~~~~sp~~~~l~s~~~----------dg~i~i  386 (456)
                      ++ .++..+.+|.+++.|....... ...+.          -.......++++|+++.++....          .+.|.+
T Consensus       237 dG-~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v  315 (386)
T 3sjl_D          237 AG-RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  315 (386)
T ss_dssp             TT-EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CC-cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence            23 3444666899999997654321 11110          01223345788999988877643          257999


Q ss_pred             EeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEe-eCCCceEE
Q 012799          387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSG-SKDSTLKV  455 (456)
Q Consensus       387 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~-s~Dg~v~i  455 (456)
                      +|+.+++.+..+... ..++++                           ++++|++ +|+++ ..++.|.+
T Consensus       316 iD~~t~kv~~~i~vg-~~~~~l---------------------------avs~D~~~~ly~tn~~~~~VsV  358 (386)
T 3sjl_D          316 LDAKTGERLAKFEMG-HEIDSI---------------------------NVSQDEKPLLYALSTGDKTLYI  358 (386)
T ss_dssp             EETTTCCEEEEEEEE-EEECEE---------------------------EECSSSSCEEEEEETTTTEEEE
T ss_pred             EECCCCeEEEEEECC-CCcceE---------------------------EECCCCCeEEEEEcCCCCeEEE
Confidence            999999999888743 356777                           8899997 66664 45787765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.62  E-value=5e-13  Score=118.68  Aligned_cols=240  Identities=10%  Similarity=0.112  Sum_probs=160.3

Q ss_pred             CCcccEEEEEECCCCCeEEE-------EECCCcEEEEeCCCCcceeEEe----cCCCCEEEEEEcCC-CCEEEEEeCCCe
Q 012799          106 GHTEAVLSVAFSPDGRQLAS-------GSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSAD-GKHLVSGSKAGE  173 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~-------~~~d~~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~s~~~dg~  173 (456)
                      ..-....+++|+++|+++++       +..++.|.+||..+++......    ++...+.+++++++ ++++++ +..+.
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~   93 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLG   93 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence            34456689999999988877       5678899999987776543221    24567999999999 654444 44557


Q ss_pred             EEEEeCCCCCCccc-cc---cCcccceEEEEecccccCCCCCEEEEEeCC---------------CcEEEEECCCCeEEE
Q 012799          174 LQCWDPQTGKPSGN-PL---SGHKKWITGISWEPVHLNAPCRRFVSASKD---------------GDARIWDVSLRKCVI  234 (456)
Q Consensus       174 i~vwd~~~~~~~~~-~~---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~  234 (456)
                      |.+||.+ ++.... ..   ......+.++++.+     +++.+++...+               +.|..||.. ++...
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-----~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~  166 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-----EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ  166 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-----TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-----CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence            9999988 654321 10   11123578889888     78777776554               567777765 44333


Q ss_pred             EecCcCccEEEEEeC----CCC-eEEEE-eCCCcEEEEECC-CCeE-----EEEeecCC-cceEEEEecCcceeeecccc
Q 012799          235 CLSGHTLAVTCVKWG----GDG-VIYTG-SQDCTIKVWETT-QGKL-----IRELKGHG-HWVNSLALSTEYALRTGAFD  301 (456)
Q Consensus       235 ~~~~~~~~v~~~~~~----~~~-~l~~~-~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~i~~~~~~~~~~~~~~~~~  301 (456)
                      .. .+......++++    +++ .++++ ..++.|.+||+. +++.     ...+..+. .....++++++         
T Consensus       167 ~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~---------  236 (314)
T 1pjx_A          167 VD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED---------  236 (314)
T ss_dssp             EE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT---------
T ss_pred             ec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCC---------
Confidence            22 233456788999    988 55555 467899999976 4442     22223222 44667777776         


Q ss_pred             CCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE-EEEC
Q 012799          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA-SASF  380 (456)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~~~  380 (456)
                                                 +..+++...++.|.+||..++. ....+..+...+.+++|+|+|+.|+ +...
T Consensus       237 ---------------------------G~l~v~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          237 ---------------------------NNLLVANWGSSHIEVFGPDGGQ-PKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             ---------------------------CCEEEEEETTTEEEEECTTCBS-CSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             ---------------------------CCEEEEEcCCCEEEEEcCCCCc-EeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence                                       4556776778899999965443 2333444557799999999999554 4455


Q ss_pred             CCcEEEEeCCC
Q 012799          381 DKSIKLWNGTT  391 (456)
Q Consensus       381 dg~i~iwd~~~  391 (456)
                      ++.|..|++..
T Consensus       289 ~~~l~~~~~~~  299 (314)
T 1pjx_A          289 NNAVWKFEWQR  299 (314)
T ss_dssp             TTEEEEEECSS
T ss_pred             CCeEEEEeCCC
Confidence            67899999764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.61  E-value=6.2e-13  Score=118.11  Aligned_cols=237  Identities=12%  Similarity=0.125  Sum_probs=158.4

Q ss_pred             ecCCCCEEEEEEcCCCCEEEE-------EeCCCeEEEEeCCCCCCccccc---cCcccceEEEEecccccCCC-CCEEEE
Q 012799          147 TGHKNWVLCIAWSADGKHLVS-------GSKAGELQCWDPQTGKPSGNPL---SGHKKWITGISWEPVHLNAP-CRRFVS  215 (456)
Q Consensus       147 ~~~~~~v~~~~~~~~~~~l~s-------~~~dg~i~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~-~~~l~~  215 (456)
                      ...-....+++|+++++++++       +..++.|.+||..+++......   .++...+.++.+.+     + +. +..
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-----~~g~-l~v   87 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-----DANQ-LFV   87 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-----SSSE-EEE
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-----CCCc-EEE
Confidence            334456789999999988777       5778899999988776532111   12456788899887     6 54 444


Q ss_pred             EeCCCcEEEEECCCCeEEEE-ecC----cCccEEEEEeCCCCeEEEEe-CC---------------CcEEEEECCCCeEE
Q 012799          216 ASKDGDARIWDVSLRKCVIC-LSG----HTLAVTCVKWGGDGVIYTGS-QD---------------CTIKVWETTQGKLI  274 (456)
Q Consensus       216 ~~~dg~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~l~~~~-~d---------------g~i~iwd~~~~~~~  274 (456)
                      ++..+.|.+||.. ++.... ...    ....+.+++++++|.++.++ .+               +.|..||.. ++..
T Consensus        88 ~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~  165 (314)
T 1pjx_A           88 ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI  165 (314)
T ss_dssp             EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred             EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE
Confidence            5445579999988 665433 221    12457899999999554444 33               567788766 5543


Q ss_pred             EEeecCCcceEEEEec----CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE-EEEeCCCcEEEEecCCC
Q 012799          275 RELKGHGHWVNSLALS----TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAVS  349 (456)
Q Consensus       275 ~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~  349 (456)
                      .... .......++++    +++                                    +.+ ++...++.|.+||+...
T Consensus       166 ~~~~-~~~~~~~i~~~~~~d~dg------------------------------------~~l~v~~~~~~~i~~~~~~~~  208 (314)
T 1pjx_A          166 QVDT-AFQFPNGIAVRHMNDGRP------------------------------------YQLIVAETPTKKLWSYDIKGP  208 (314)
T ss_dssp             EEEE-EESSEEEEEEEECTTSCE------------------------------------EEEEEEETTTTEEEEEEEEET
T ss_pred             Eecc-CCCCcceEEEecccCCCC------------------------------------CEEEEEECCCCeEEEEECCCC
Confidence            3222 22345677777    663                                    234 44456789999996522


Q ss_pred             CC-----Ccccccccc-ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCce
Q 012799          350 KQ-----PKTRMTGHQ-QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY  423 (456)
Q Consensus       350 ~~-----~~~~~~~~~-~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~  423 (456)
                      ..     ....+..+. ..+..++++++|+++++...++.|.+||..+++.+..+..+...+.++               
T Consensus       209 g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i---------------  273 (314)
T 1pjx_A          209 AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNL---------------  273 (314)
T ss_dssp             TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEE---------------
T ss_pred             CccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeE---------------
Confidence            11     112223333 567889999999988888888999999998788777777676778888               


Q ss_pred             eeecccccccceeEecCCCeEE-EeeCCCceEE
Q 012799          424 CVVDMSCCMSLYSWSADSRLLL-SGSKDSTLKV  455 (456)
Q Consensus       424 ~~~~~~~~~~~~~~s~dg~~l~-s~s~Dg~v~i  455 (456)
                                  +|+++|+.|. +...++.|..
T Consensus       274 ------------~~~~dg~~l~v~~~~~~~l~~  294 (314)
T 1pjx_A          274 ------------HFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             ------------EECTTSSEEEEEETTTTEEEE
T ss_pred             ------------EECCCCCEEEEEeCCCCeEEE
Confidence                        8899999554 4445566654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.59  E-value=2.4e-13  Score=121.19  Aligned_cols=251  Identities=13%  Similarity=0.084  Sum_probs=163.6

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEE----------CCCcEEEEeCCCCcceeEEecCC-------CCEEEEEEcCCCCE
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGHK-------NWVLCIAWSADGKH  164 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~----------~d~~v~vwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~  164 (456)
                      .++.....+ . ++++|||++++++.          .++.|.+||..+.+.+.++.-..       .....++|+|||++
T Consensus        73 ~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~  150 (386)
T 3sjl_D           73 GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT  150 (386)
T ss_dssp             EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSE
T ss_pred             EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCE
Confidence            333333344 4 99999999887765          35789999999999888775321       24667999999999


Q ss_pred             EEEEeC--CCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-CeEEEEecCcC-
Q 012799          165 LVSGSK--AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHT-  240 (456)
Q Consensus       165 l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~-  240 (456)
                      ++++..  ++.|.++|+.+++.+..+....   . ...+ |.    ....+++.+.||.+.+.++.. ++.......+. 
T Consensus       151 lyVan~~~~~~VsVID~~t~~vv~tI~v~g---~-~~~~-P~----g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~  221 (386)
T 3sjl_D          151 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPD---C-YHIF-PT----APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH  221 (386)
T ss_dssp             EEEEECSSSCEEEEEETTTTEEEEEEECCS---E-EEEE-EE----ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred             EEEEEcCCCCeEEEEECCCCcEEEEEECCC---c-ceee-cC----CCceeEEECCCCCEEEEECCCCCeEEEeecceec
Confidence            998864  6899999999998765432211   1 1122 31    345777888899999999876 55433221111 


Q ss_pred             ---ccEE-EEEe-CCCCeEEEEeCCCcEEEEECCCCe--EEEEeec----------CCcceEEEEecCcceeeeccccCC
Q 012799          241 ---LAVT-CVKW-GGDGVIYTGSQDCTIKVWETTQGK--LIRELKG----------HGHWVNSLALSTEYALRTGAFDHT  303 (456)
Q Consensus       241 ---~~v~-~~~~-~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~~  303 (456)
                         .++. ...| .++|.++..+.+|.|++.|+.++.  ....+..          .......++++++           
T Consensus       222 ~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~-----------  290 (386)
T 3sjl_D          222 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA-----------  290 (386)
T ss_dssp             CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT-----------
T ss_pred             cccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC-----------
Confidence               1221 1344 367765557778999999997654  2222210          0112223444544           


Q ss_pred             CCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC----------CCcEEEEecCCCCCCccccccccccEeEEEECCCCC
Q 012799          304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD----------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ  373 (456)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~  373 (456)
                                               +++++....          .+.|.++|+.+.+.......+  ..+..+++++|++
T Consensus       291 -------------------------~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~  343 (386)
T 3sjl_D          291 -------------------------LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEK  343 (386)
T ss_dssp             -------------------------TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSS
T ss_pred             -------------------------CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCC
Confidence                                     344554432          257999998776544443333  3588999999997


Q ss_pred             -EEEEE-ECCCcEEEEeCCCCeEEEEEecc
Q 012799          374 -WVASA-SFDKSIKLWNGTTGKFVAVFRGH  401 (456)
Q Consensus       374 -~l~s~-~~dg~i~iwd~~~~~~~~~~~~~  401 (456)
                       +|++. ..++.|.++|..+++.+.++...
T Consensus       344 ~~ly~tn~~~~~VsViD~~t~k~~~~i~~~  373 (386)
T 3sjl_D          344 PLLYALSTGDKTLYIHDAESGEELRSVNQL  373 (386)
T ss_dssp             CEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             eEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence             66665 45899999999999999888743

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.58  E-value=2.5e-12  Score=118.04  Aligned_cols=231  Identities=11%  Similarity=0.069  Sum_probs=158.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC--cEEEEECC
Q 012799          151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--DARIWDVS  228 (456)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~  228 (456)
                      .....|+|+++++++++...++.|++||..++.... .... ..... ++|++     +++.++++..++  .|.+++..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~-~~~~-~~~~~-ia~~~-----~g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT-VHPG-FKGGK-PAVTK-----DKQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE-EEET-CCBCB-CEECT-----TSSEEEEEBSSTTCEEEEEEGG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE-eecc-CCCCc-eeEec-----CCCcEEEEecCCCceEEEEEcC
Confidence            468899999999977777778999999998776543 2222 22223 78888     888888888766  79999887


Q ss_pred             CCeEEEEe----cCcCccEEEEEeCC-CCeEEEEeCCCcEEEEECCCCeEEEE----eecCCcce--EEEEecCcceeee
Q 012799          229 LRKCVICL----SGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRE----LKGHGHWV--NSLALSTEYALRT  297 (456)
Q Consensus       229 ~~~~~~~~----~~~~~~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~i--~~~~~~~~~~~~~  297 (456)
                      .+.....+    ......+.+++++| ++.|+++..++.|+.||..++.....    ..+....-  ..++++|+.    
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~----  278 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD----  278 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT----
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC----
Confidence            65443333    22456678899999 56777777889999999987753322    11111111  278888741    


Q ss_pred             ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc---------------ccc
Q 012799          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH---------------QQL  362 (456)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~~  362 (456)
                                                     +..+++...++.|+.|+....   ...+.++               -..
T Consensus       279 -------------------------------g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~  324 (409)
T 3hrp_A          279 -------------------------------SNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQ  324 (409)
T ss_dssp             -------------------------------TEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSS
T ss_pred             -------------------------------CEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCC
Confidence                                           344666677888999985432   2222222               134


Q ss_pred             EeEEEECCCCCEEEEEE-CCCcEEEEeCCCCeEEEEEeccc---------------ccEEEEEeeeeeeecCCCCceeee
Q 012799          363 VNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGHV---------------GPVYQIRFELIYCFRYPSNFYCVV  426 (456)
Q Consensus       363 v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~---------------~~v~~i~~~~~~~~~~~~~~~~~~  426 (456)
                      ...++++|+|+++++-+ .+++|+.|+..+++. ..+.++.               .....+                  
T Consensus       325 P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~gi------------------  385 (409)
T 3hrp_A          325 PNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDI------------------  385 (409)
T ss_dssp             EEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEE------------------
T ss_pred             CeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEE------------------
Confidence            78999999999877777 789999999888864 3444331               123333                  


Q ss_pred             cccccccceeEecCCCeEEEeeCCCceEE
Q 012799          427 DMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       427 ~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                               +++++|.++++-..+++|+.
T Consensus       386 ---------avd~~g~lyVad~~n~~Ir~  405 (409)
T 3hrp_A          386 ---------CYDGEGGYWIAEAWGKAIRK  405 (409)
T ss_dssp             ---------EECSSSEEEEEESTTCEEEE
T ss_pred             ---------EEcCCCCEEEEECCCCeEEE
Confidence                     88999888888888888764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.57  E-value=1e-11  Score=112.32  Aligned_cols=238  Identities=11%  Similarity=-0.002  Sum_probs=153.9

Q ss_pred             EEEECCCCCeEEEEE----------CCCcEEEEeCCCCcceeEEecC-------CCCEEEEEEcCCCCEEEEEeC--CCe
Q 012799          113 SVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSADGKHLVSGSK--AGE  173 (456)
Q Consensus       113 ~~~~s~~~~~l~~~~----------~d~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--dg~  173 (456)
                      .++++|||++++.+.          .++.|.+||..+.+.+..+.-.       ......++|+|||++|+++..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999998885          3678999999988877766422       133568999999999998874  478


Q ss_pred             EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-----CcCccE-EEEE
Q 012799          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-----GHTLAV-TCVK  247 (456)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v-~~~~  247 (456)
                      |.++| .+++....... ....   +.+.|.    ....+++.+.||.+.++|. +++......     ....++ ....
T Consensus       150 v~viD-~t~~~~~~~i~-~~~~---~~~~~~----~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~  219 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLS-SPTC---YHIHPG----APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPA  219 (373)
T ss_pred             EEEEE-CCCCEEeEEcC-CCce---EEEEeC----CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecce
Confidence            99999 88876543011 1111   233331    2346677788999999999 776653321     111121 2234


Q ss_pred             eCCCC-eEEEEeCCCcEEEEECCCCe--EEEEeecCCcc----------eEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799          248 WGGDG-VIYTGSQDCTIKVWETTQGK--LIRELKGHGHW----------VNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (456)
Q Consensus       248 ~~~~~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (456)
                      +.+++ .++..+..+.+.+.|+..+.  .+..+......          ...+.++++                      
T Consensus       220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d----------------------  277 (373)
T 2mad_H          220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS----------------------  277 (373)
T ss_pred             eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCC----------------------
Confidence            45544 44444477899999997653  22322211111          122334443                      


Q ss_pred             HHHHhhhhhccCCCCCEEEEEeC----------CCcEEEEecCCCCCCccccccccccEeEEEECCCCC-EEEEEE-CCC
Q 012799          315 KAALERYNKIKGNAPERLVSGSD----------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS-FDK  382 (456)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~-~dg  382 (456)
                                    +..++.+..          ++.|.++|..+.+.... +. -......++|+|||+ +++++. .++
T Consensus       278 --------------~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~-i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~  341 (373)
T 2mad_H          278 --------------SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ-IS-LGHDVDAISVAQDGGPDLYALSAGTE  341 (373)
T ss_pred             --------------CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE-EE-CCCCcCeEEECCCCCeEEEEEcCCCC
Confidence                          444555432          35799999766543333 32 223578999999999 677776 589


Q ss_pred             cEEEEeCCCCeEEEEE
Q 012799          383 SIKLWNGTTGKFVAVF  398 (456)
Q Consensus       383 ~i~iwd~~~~~~~~~~  398 (456)
                      .|.+||..+++.+..+
T Consensus       342 ~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          342 VLHIYDAGAGDQDQST  357 (373)
T ss_pred             eEEEEECCCCCEEeee
Confidence            9999999999998874

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.56  E-value=1.7e-13  Score=122.77  Aligned_cols=170  Identities=11%  Similarity=0.088  Sum_probs=134.1

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-----------ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  178 (456)
                      +++.+++++...++++|+.++ +++|+++...           +... ..+.. |+.++|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            689999999999999999885 6779865322           1122 24666 999999  99999998 889999999


Q ss_pred             CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEe
Q 012799          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS  258 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~  258 (456)
                      +.+..... ....|...+.++.+.+       ..+++++.||.+.+||+.++....    +...|+|++|+|+| ++.|.
T Consensus       113 v~sl~~~~-~~~~~~~~v~~i~~~~-------p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-~~vg~  179 (388)
T 1xip_A          113 LEELSEFR-TVTSFEKPVFQLKNVN-------NTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-LAVLL  179 (388)
T ss_dssp             SSSTTCEE-EEEECSSCEEEEEECS-------SEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-EEEEE
T ss_pred             chhhhccC-ccceeecceeeEEecC-------CCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-eEEEE
Confidence            98766332 4556667788777655       238899999999999999877643    45689999999999 77899


Q ss_pred             CCCcEEEEECCCCeE--EEEe------e---cCCcceEEEEecCcceeeec
Q 012799          259 QDCTIKVWETTQGKL--IREL------K---GHGHWVNSLALSTEYALRTG  298 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~--~~~~------~---~~~~~i~~~~~~~~~~~~~~  298 (456)
                      .||.+++|+...++.  ..++      .   +|...|.++.|.+++.+...
T Consensus       180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            999999999888775  5556      2   36788999999998776543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.55  E-value=8.4e-12  Score=109.72  Aligned_cols=214  Identities=10%  Similarity=0.040  Sum_probs=144.3

Q ss_pred             cCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEE
Q 012799          148 GHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD  226 (456)
Q Consensus       148 ~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  226 (456)
                      .+..-..+..|++++ .++++...++.|..||..+++...   ......+.++++.+     ++++++ +. ++.|.+||
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---~~~~~~~~~i~~~~-----dG~l~v-~~-~~~l~~~d   79 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---VTMDAPVSSVALRQ-----SGGYVA-TI-GTKFCALN   79 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---EECSSCEEEEEEBT-----TSSEEE-EE-TTEEEEEE
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---EeCCCceEEEEECC-----CCCEEE-EE-CCeEEEEE
Confidence            344456788999954 455666678899999998776422   22346788999988     888544 44 56899999


Q ss_pred             CCCCeEEEEecC----cCccEEEEEeCCCCeEEEEeC------------CCcEEEEECCCCeEEEEeecCCcceEEEEec
Q 012799          227 VSLRKCVICLSG----HTLAVTCVKWGGDGVIYTGSQ------------DCTIKVWETTQGKLIRELKGHGHWVNSLALS  290 (456)
Q Consensus       227 ~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  290 (456)
                      ..+++.......    ....+.+++++++|.++.++.            .+.|..+|.. ++... +.......+.++++
T Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~s  157 (297)
T 3g4e_A           80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWS  157 (297)
T ss_dssp             TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEEC
T ss_pred             CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEc
Confidence            988765433321    234588999999995555442            2344444443 33322 32233446788888


Q ss_pred             CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecC-CCCCC-----ccccccccccEe
Q 012799          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA-VSKQP-----KTRMTGHQQLVN  364 (456)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~-----~~~~~~~~~~v~  364 (456)
                      |++.                                   ..+++.+.++.|.+||+. .....     ...+..+...+.
T Consensus       158 pdg~-----------------------------------~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~  202 (297)
T 3g4e_A          158 LDHK-----------------------------------IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPD  202 (297)
T ss_dssp             TTSC-----------------------------------EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEE
T ss_pred             CCCC-----------------------------------EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCC
Confidence            8732                                   124566668899999864 22211     112223345678


Q ss_pred             EEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       365 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      .++++++|++.++....+.|..||..+|+.+..+..+...++++
T Consensus       203 g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~  246 (297)
T 3g4e_A          203 GMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSC  246 (297)
T ss_dssp             EEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEE
T ss_pred             eeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEE
Confidence            99999999988888788899999999999999998887788888

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.55  E-value=1.3e-12  Score=118.73  Aligned_cols=263  Identities=15%  Similarity=0.068  Sum_probs=175.2

Q ss_pred             CCCCeEEEEEC-C----CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCC
Q 012799          118 PDGRQLASGSG-D----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTG  182 (456)
Q Consensus       118 ~~~~~l~~~~~-d----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~  182 (456)
                      ++++.+++... +    +.|.++|..+++.+.++..-..+  .++++||+++++++.          .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            46666665544 2    69999999999999988755555  899999999888876          3678999999998


Q ss_pred             CCccccccC------cccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--
Q 012799          183 KPSGNPLSG------HKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--  252 (456)
Q Consensus       183 ~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--  252 (456)
                      +....+..+      .......+.++|     +|++++++..  ++.|.+.|+.+++.+..+.-...    ....|++  
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~sp-----DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~  230 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTP-----DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPT  230 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECT-----TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETT
T ss_pred             cEEEEEECCCccccccCCCcceEEEcC-----CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCc
Confidence            876543221      012234567777     9999998874  57899999999998887753221    2233333  


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEee----cCCcce-EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799          253 VIYTGSQDCTIKVWETTQGKLIRELK----GHGHWV-NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (456)
                      .+++.+.||.+.+.+..+++......    ....++ ..+.+.+                                    
T Consensus       231 ~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~------------------------------------  274 (426)
T 3c75_H          231 VFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSL------------------------------------  274 (426)
T ss_dssp             EEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECT------------------------------------
T ss_pred             EEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecC------------------------------------
Confidence            67778889999988886665543211    000000 0111222                                    


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCc----ccc-------ccccccEeEEEECCCCCEEEEEEC----------CCcEEE
Q 012799          328 APERLVSGSDDFTMFLWEPAVSKQPK----TRM-------TGHQQLVNHVYFSPDGQWVASASF----------DKSIKL  386 (456)
Q Consensus       328 ~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~-------~~~~~~v~~~~~sp~~~~l~s~~~----------dg~i~i  386 (456)
                      ++..++..+..+.+.+.|........    ...       .........++++|+++.+++...          ++.|.+
T Consensus       275 dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsV  354 (426)
T 3c75_H          275 RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVV  354 (426)
T ss_dssp             TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEE
Confidence            24556666778899999975432110    000       001111223689999887776542          357999


Q ss_pred             EeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEee-CCCceEE
Q 012799          387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKV  455 (456)
Q Consensus       387 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s-~Dg~v~i  455 (456)
                      +|..+++.+..+.... ....+                           +|+|||+ +++++. .++.|.|
T Consensus       355 ID~~T~kvv~~I~vg~-~P~gi---------------------------a~spDg~~~lyv~n~~s~~VsV  397 (426)
T 3c75_H          355 LNAETGERINKIELGH-EIDSI---------------------------NVSQDAEPLLYALSAGTQTLHI  397 (426)
T ss_dssp             EETTTCCEEEEEEEEE-EECEE---------------------------EECCSSSCEEEEEETTTTEEEE
T ss_pred             EECCCCeEEEEEECCC-CcCeE---------------------------EEccCCCEEEEEEcCCCCeEEE
Confidence            9999999998886432 35666                           8899999 888887 4888866

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.55  E-value=2.5e-11  Score=106.78  Aligned_cols=214  Identities=12%  Similarity=0.056  Sum_probs=144.6

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  228 (456)
                      ....+.++++.++|+..++...++.|.+||.. ++............+.++++.+     ++..+++...++.|..||..
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-----LGDIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECTT
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-----CCCEEEEecCCCeEEEECCC
Confidence            45678999999999988877778999999987 5543212223345688888887     78877776667899999988


Q ss_pred             CCeEE-EEecCcCccEEEEEeCCCCeEEEEe-CCCcEEEEECCCCeEEEE-eecCCcceEEEEecCcceeeeccccCCCC
Q 012799          229 LRKCV-ICLSGHTLAVTCVKWGGDGVIYTGS-QDCTIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (456)
Q Consensus       229 ~~~~~-~~~~~~~~~v~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  305 (456)
                       ++.. .........+.++++.+++.++.+. .++.|..||.. ++.... +......+..+++.++             
T Consensus        92 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~-------------  156 (300)
T 2qc5_A           92 -GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD-------------  156 (300)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT-------------
T ss_pred             -CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC-------------
Confidence             5443 2233344678999999988555444 47889999987 554422 2323455777777776             


Q ss_pred             ccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEE
Q 012799          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK  385 (456)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~  385 (456)
                                             +..+++...++.|..||. .+.........+...+..++++++|++.++....+.|.
T Consensus       157 -----------------------g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  212 (300)
T 2qc5_A          157 -----------------------NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIG  212 (300)
T ss_dssp             -----------------------SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             -----------------------CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence                                   444555556788999986 33222222223345688999999998777766677899


Q ss_pred             EEeCCCCeEEEE-EecccccEEEE
Q 012799          386 LWNGTTGKFVAV-FRGHVGPVYQI  408 (456)
Q Consensus       386 iwd~~~~~~~~~-~~~~~~~v~~i  408 (456)
                      +||. +++.... +..+...+.++
T Consensus       213 ~~~~-~g~~~~~~~~~~~~~~~~i  235 (300)
T 2qc5_A          213 RITT-TGEISEYDIPTPNARPHAI  235 (300)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEE
T ss_pred             EEcC-CCcEEEEECCCCCCCceEE
Confidence            9998 5554332 22334456666

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.54  E-value=4.1e-12  Score=116.63  Aligned_cols=235  Identities=11%  Similarity=0.090  Sum_probs=159.3

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCCCc
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPS  185 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~  185 (456)
                      -.....++|+++++++++...++.|++||..++........ ..... ++|+++++.|+++..++  .|.+++...+...
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            34688999999999878777788999999987766554443 33334 99999999999988866  7888888765432


Q ss_pred             ccc--c-cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE----ecCcCccE--EEEEeCCC-Ce-E
Q 012799          186 GNP--L-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC----LSGHTLAV--TCVKWGGD-GV-I  254 (456)
Q Consensus       186 ~~~--~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v--~~~~~~~~-~~-l  254 (456)
                      ...  . ......+.+++++|     ++..|+++..++.|+.||..++.....    ..++...-  ..++|+|+ +. +
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p-----~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDE-----TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECT-----TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             EEeeeccchhcCCcEEEEEeC-----CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence            111  0 21345567788877     556666677788999999987754332    22222222  38999994 64 4


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeecCC---------------cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHh
Q 012799          255 YTGSQDCTIKVWETTQGKLIRELKGHG---------------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (456)
Q Consensus       255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (456)
                      ++-..++.|+.|+....  +..+.++.               .....++++++                           
T Consensus       283 v~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d---------------------------  333 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED---------------------------  333 (409)
T ss_dssp             EEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT---------------------------
T ss_pred             EEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC---------------------------
Confidence            45556788999997643  33332221               23556666665                           


Q ss_pred             hhhhccCCCCCEEEEEe-CCCcEEEEecCCCCCCccccccc---------------cccEeEEEECCCCCEEEEEECCCc
Q 012799          320 RYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGH---------------QQLVNHVYFSPDGQWVASASFDKS  383 (456)
Q Consensus       320 ~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---------------~~~v~~~~~sp~~~~l~s~~~dg~  383 (456)
                               ++.+++-. .++.|+.||+..+.  +..+.++               -.....++++++|.++++-..+++
T Consensus       334 ---------G~lyvad~~~~~~I~~~~~~~G~--v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~  402 (409)
T 3hrp_A          334 ---------GNFYIVDGFKGYCLRKLDILDGY--VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA  402 (409)
T ss_dssp             ---------CCEEEEETTTTCEEEEEETTTTE--EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred             ---------CCEEEEeCCCCCEEEEEECCCCE--EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence                     45577777 78899999954432  2222222               245889999999888888888888


Q ss_pred             EEEEeC
Q 012799          384 IKLWNG  389 (456)
Q Consensus       384 i~iwd~  389 (456)
                      |+.+++
T Consensus       403 Ir~i~~  408 (409)
T 3hrp_A          403 IRKYAV  408 (409)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            888765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.49  E-value=2.3e-12  Score=127.05  Aligned_cols=242  Identities=13%  Similarity=0.095  Sum_probs=155.0

Q ss_pred             CCcccEEEEEECCCCCeEEEEE-----CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC--------
Q 012799          106 GHTEAVLSVAFSPDGRQLASGS-----GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--------  172 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~-----~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--------  172 (456)
                      +|...+..++|||||++||.+.     .+..|++||+.+++.+.... +......++|+ |++.|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            4677899999999999998543     23579999999988654311 11113568899 999999988774        


Q ss_pred             -----eEEEEeCCCCCCccccc---cC-cccceEEEEecccccCCCCCEEEEEeC----CCcEEEEECCCCe-EEEEecC
Q 012799          173 -----ELQCWDPQTGKPSGNPL---SG-HKKWITGISWEPVHLNAPCRRFVSASK----DGDARIWDVSLRK-CVICLSG  238 (456)
Q Consensus       173 -----~i~vwd~~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~  238 (456)
                           .|.+|++.++......+   .. |......+.|+|     +|++++....    ++.|+++|+.++. ....+..
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~  278 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-----DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG  278 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-----TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-----CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence                 39999998765422112   22 344577889998     8888865433    3589999997763 3344444


Q ss_pred             cCccEEEEEeCCCC-eE-EEEeCC---CcEEEEECCCCeE--EEEeecCCcceEEEEecCcceeeeccccCCCCccCChH
Q 012799          239 HTLAVTCVKWGGDG-VI-YTGSQD---CTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (456)
Q Consensus       239 ~~~~v~~~~~~~~~-~l-~~~~~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (456)
                      +....... +++++ .| +....+   +.|..+|+.++..  ...+..+...+.  .++++                   
T Consensus       279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~-------------------  336 (693)
T 3iuj_A          279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG-------------------  336 (693)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE-------------------
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE-------------------
Confidence            44444444 44444 44 444333   5799999987654  234444444443  56655                   


Q ss_pred             HHHHHHHhhhhhccCCCCCEEEEEe-CCC--cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC----CcE
Q 012799          312 EMKKAALERYNKIKGNAPERLVSGS-DDF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD----KSI  384 (456)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d----g~i  384 (456)
                                       ++.|+... .++  .|++||+... ............+..+.++++++.|+....+    +.+
T Consensus       337 -----------------g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l  398 (693)
T 3iuj_A          337 -----------------SGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTL  398 (693)
T ss_dssp             -----------------TTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred             -----------------CCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEE
Confidence                             34455444 444  6888886532 2222222344567788888888876655444    789


Q ss_pred             EEEeCCCCeE
Q 012799          385 KLWNGTTGKF  394 (456)
Q Consensus       385 ~iwd~~~~~~  394 (456)
                      ..||+.+++.
T Consensus       399 ~~~d~~~g~~  408 (693)
T 3iuj_A          399 YRFEPKSGAI  408 (693)
T ss_dssp             EEECTTTCCE
T ss_pred             EEEECCCCeE
Confidence            9999988764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.48  E-value=2.7e-12  Score=115.37  Aligned_cols=260  Identities=14%  Similarity=0.121  Sum_probs=164.0

Q ss_pred             ccEEEEEECCCCCeEEEEE--CCCcEEEEeCCCCcceeEE-------ecCCCCEEEEEEcCCCCEEEEEeC-----CCeE
Q 012799          109 EAVLSVAFSPDGRQLASGS--GDTTVRLWDLNTQTPMFKC-------TGHKNWVLCIAWSADGKHLVSGSK-----AGEL  174 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~--~d~~v~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i  174 (456)
                      ..+..++++|+|+++++..  .++.++||.+.+++ +..+       ..+...+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6789999999999888864  23435555554443 2222       134568999999999876665433     5789


Q ss_pred             EEEeCCCCCCccccc-----cCcccceEEEEecccccCCCCCEE-EEEe---CCCcEEEEECCCCeEEEEecCcCccEE-
Q 012799          175 QCWDPQTGKPSGNPL-----SGHKKWITGISWEPVHLNAPCRRF-VSAS---KDGDARIWDVSLRKCVICLSGHTLAVT-  244 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~l-~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~-  244 (456)
                      .+||+.+++......     ..+...+..+++.+     ++..+ ++..   .++.|.+||+.+++....+.+|..... 
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~-----~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~  170 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDL-----IHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE  170 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEET-----TTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEec-----CCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence            999999887433211     12234567888876     43444 5544   578999999998887776655422110 


Q ss_pred             EEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799          245 CVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (456)
Q Consensus       245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (456)
                      ...+..+| .+.+...+|.+..|.              ..+..++++|+                               
T Consensus       171 ~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~d-------------------------------  205 (343)
T 2qe8_A          171 DIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAE-------------------------------  205 (343)
T ss_dssp             SCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTT-------------------------------
T ss_pred             ccceeECCEEEEeccCCCceecee--------------cccceeEeccC-------------------------------
Confidence            02233355 455566777765553              12567899987                               


Q ss_pred             ccCCCCCEEEEEeCCC-cEEEEecC---CCCCC----cc--ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe
Q 012799          324 IKGNAPERLVSGSDDF-TMFLWEPA---VSKQP----KT--RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (456)
Q Consensus       324 ~~~~~~~~l~~~~~dg-~i~iwd~~---~~~~~----~~--~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~  393 (456)
                           ++.++.+..++ .++.++..   .....    ..  ...++......++++++|+++++...++.|.+||..+|+
T Consensus       206 -----g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          206 -----NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             -----SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             -----CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence                 44466666555 55555532   11100    00  111334456779999999999998889999999986676


Q ss_pred             EEEEEecc-cccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC
Q 012799          394 FVAVFRGH-VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS  451 (456)
Q Consensus       394 ~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg  451 (456)
                      ........ .....++                           +|.++|+++++.+..+
T Consensus       281 ~~~~~~~~~~~~p~~v---------------------------a~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          281 YKLLVTDEKLSWTDSF---------------------------NFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             EEEEEECGGGSCEEEE---------------------------EECTTSCEEEEECCGG
T ss_pred             EEEEEECCceecCCee---------------------------EECCCCcEEEEeCccc
Confidence            54333322 3446677                           8889988888776543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.48  E-value=9.5e-13  Score=117.92  Aligned_cols=158  Identities=13%  Similarity=0.039  Sum_probs=117.4

Q ss_pred             ceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEecCcCccEEEEEeCCCC-eEEEEeCCCc
Q 012799          195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-----------CVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT  262 (456)
Q Consensus       195 ~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~  262 (456)
                      .+..+++++     ....+++|+.++ +.+|++...+           ..... .+.. |+.++|  ++ .|+++ .++.
T Consensus        39 ~~nlLais~-----~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~  107 (388)
T 1xip_A           39 SLQNLDISN-----SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNA  107 (388)
T ss_dssp             CCBCEEEET-----TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSE
T ss_pred             cccEEEEcC-----CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCc
Confidence            577888888     778999999875 6669865322           11122 2455 999999  55 77777 8899


Q ss_pred             EEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEE
Q 012799          263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (456)
Q Consensus       263 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  342 (456)
                      |++||+++.........+...+.++.+.+.                                      .+++++.||.+.
T Consensus       108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--------------------------------------~~av~~~dG~L~  149 (388)
T 1xip_A          108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNN--------------------------------------TLVILNSVNDLS  149 (388)
T ss_dssp             EEEEESSSTTCEEEEEECSSCEEEEEECSS--------------------------------------EEEEEETTSEEE
T ss_pred             EEEEEchhhhccCccceeecceeeEEecCC--------------------------------------CEEEEECCCCEE
Confidence            999999877665566666666776655432                                      288889999999


Q ss_pred             EEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE--EEEE------e---cccccEEEE
Q 012799          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVF------R---GHVGPVYQI  408 (456)
Q Consensus       343 iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~--~~~~------~---~~~~~v~~i  408 (456)
                      +||+......     .+...|++++|||+|  ++.|..||.+++|+...++.  ..++      .   +|...|.++
T Consensus       150 v~dl~~~~~~-----~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI  219 (388)
T 1xip_A          150 ALDLRTKSTK-----QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSV  219 (388)
T ss_dssp             EEETTTCCEE-----EEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEE
T ss_pred             EEEccCCccc-----cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEE
Confidence            9998755432     245689999999999  67899999999999877775  5556      2   367788888

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.46  E-value=1.7e-10  Score=102.69  Aligned_cols=207  Identities=10%  Similarity=0.015  Sum_probs=137.8

Q ss_pred             CEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC
Q 012799          152 WVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR  230 (456)
Q Consensus       152 ~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  230 (456)
                      ......|+|++ .++++...++.|..||..+++...  . .....+.++.|.+     +++++++ +.+ .|.+||..++
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--~-~~~~~v~~i~~~~-----dg~l~v~-~~~-gl~~~d~~~g  119 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--H-ALPFMGSALAKIS-----DSKQLIA-SDD-GLFLRDTATG  119 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--E-ECSSCEEEEEEEE-----TTEEEEE-ETT-EEEEEETTTC
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--E-ECCCcceEEEEeC-----CCeEEEE-ECC-CEEEEECCCC
Confidence            35678899975 455666678899999998775432  1 1245788999988     7776665 444 4999999887


Q ss_pred             eEEEEecC----cCccEEEEEeCCCCeEEEEeC-------CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecc
Q 012799          231 KCVICLSG----HTLAVTCVKWGGDGVIYTGSQ-------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (456)
Q Consensus       231 ~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  299 (456)
                      +.......    ....+.+++++++|.++.++.       .+.|..++  +++... +.........++++++       
T Consensus       120 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~d-------  189 (326)
T 2ghs_A          120 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPD-------  189 (326)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTT-------
T ss_pred             cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCC-------
Confidence            75433221    124688999999995555443       24566666  454433 2222334567888887       


Q ss_pred             ccCCCCccCChHHHHHHHHhhhhhccCCCCCEE-EEEeCCCcEEEEecC--CC-CC----CccccccccccEeEEEECCC
Q 012799          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPA--VS-KQ----PKTRMTGHQQLVNHVYFSPD  371 (456)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~-~~----~~~~~~~~~~~v~~~~~sp~  371 (456)
                                                   ++.+ ++.+.++.|.+||+.  .+ ..    ....+......+..++++++
T Consensus       190 -----------------------------g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~  240 (326)
T 2ghs_A          190 -----------------------------GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE  240 (326)
T ss_dssp             -----------------------------SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT
T ss_pred             -----------------------------CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC
Confidence                                         3334 445567899999975  33 11    11112223455788999999


Q ss_pred             CCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          372 GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       372 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      |++.++...++.|.+||. +++.+..+..+...+.++
T Consensus       241 G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~  276 (326)
T 2ghs_A          241 GHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP  276 (326)
T ss_dssp             SCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred             CCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence            998777777789999998 688878887777778888

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.45  E-value=1e-10  Score=102.71  Aligned_cols=228  Identities=11%  Similarity=0.100  Sum_probs=145.6

Q ss_pred             CcccEEEEEECCCC-CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc
Q 012799          107 HTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (456)
Q Consensus       107 h~~~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  185 (456)
                      +..--.+..|+|++ .++++...++.|+.||..+++. ..+. ....+.+++++++|+++++ . ++.|.+||.++++..
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence            44455688999954 5566666788999999987654 3332 4578999999999995554 4 568999999877643


Q ss_pred             ccccc---CcccceEEEEecccccCCCCCEEEEEeCC---------CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-
Q 012799          186 GNPLS---GHKKWITGISWEPVHLNAPCRRFVSASKD---------GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-  252 (456)
Q Consensus       186 ~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  252 (456)
                      .....   .....+..+++.|     +|+++++...+         ..-.+|.+........+.........++|+|++ 
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~-----dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~  161 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDP-----AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHK  161 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECT-----TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSC
T ss_pred             EEEecCCCCCCCCCCCEEECC-----CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCC
Confidence            21111   1124477888888     88866654221         233455443222222232334456889999998 


Q ss_pred             eE-EEEeCCCcEEEEEC--CCCeEE-----EEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799          253 VI-YTGSQDCTIKVWET--TQGKLI-----RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (456)
Q Consensus       253 ~l-~~~~~dg~i~iwd~--~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (456)
                      .+ ++.+.++.|..||+  .++...     ..+.........+++.++                                
T Consensus       162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~--------------------------------  209 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAE--------------------------------  209 (297)
T ss_dssp             EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTT--------------------------------
T ss_pred             EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCC--------------------------------
Confidence            45 44556789999987  455432     222223345667777766                                


Q ss_pred             cCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEEC-CCCCEEEEEEC
Q 012799          325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS-PDGQWVASASF  380 (456)
Q Consensus       325 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~s~~~  380 (456)
                          ++..++....+.|..||..+++ ....+..+...+++++|. |+++.|+.++.
T Consensus       210 ----G~lwva~~~~~~v~~~d~~tG~-~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          210 ----GKLWVACYNGGRVIRLDPVTGK-RLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             ----SCEEEEEETTTEEEEECTTTCC-EEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             ----CCEEEEEcCCCEEEEEcCCCce-EEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence                4446666677889999965443 444455555679999998 88877665543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.44  E-value=2.5e-11  Score=107.13  Aligned_cols=236  Identities=12%  Similarity=0.120  Sum_probs=154.3

Q ss_pred             cceeEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC
Q 012799          141 TPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD  219 (456)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d  219 (456)
                      ..+..+...........|+|+++ ++++...++.|..|+. +++..  .+..+...+..+.+.+     +|+.+++...+
T Consensus        35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~--~~~~~~~~~~gl~~d~-----dG~l~v~~~~~  106 (305)
T 3dr2_A           35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD--VLLDATAFTNGNAVDA-----QQRLVHCEHGR  106 (305)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE--EEEESCSCEEEEEECT-----TSCEEEEETTT
T ss_pred             CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE--EEeCCCCccceeeECC-----CCCEEEEECCC
Confidence            34445555666788999999998 5667777899999998 44422  3334556688899988     88866665566


Q ss_pred             CcEEEEECCCCeEEEEec---C-cCccEEEEEeCCCCeEEE-----EeC-------------CCcEEEEECCCCeEEEEe
Q 012799          220 GDARIWDVSLRKCVICLS---G-HTLAVTCVKWGGDGVIYT-----GSQ-------------DCTIKVWETTQGKLIREL  277 (456)
Q Consensus       220 g~i~iwd~~~~~~~~~~~---~-~~~~v~~~~~~~~~~l~~-----~~~-------------dg~i~iwd~~~~~~~~~~  277 (456)
                      +.|..|+.. ++......   + ....+.+++++++|.++.     |..             .+.|..||..+++.....
T Consensus       107 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~  185 (305)
T 3dr2_A          107 RAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA  185 (305)
T ss_dssp             TEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred             CEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence            889999986 54322221   1 113466799999995554     332             256888887666544332


Q ss_pred             ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC------CcEEEEecCCCCC
Q 012799          278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD------FTMFLWEPAVSKQ  351 (456)
Q Consensus       278 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~  351 (456)
                        .......++++|+                                    +..++.+...      +.|.+|++.... 
T Consensus       186 --~~~~p~gl~~spd------------------------------------g~~lyv~~~~~~~~~~~~i~~~~~~~~~-  226 (305)
T 3dr2_A          186 --DLDHPNGLAFSPD------------------------------------EQTLYVSQTPEQGHGSVEITAFAWRDGA-  226 (305)
T ss_dssp             --EESSEEEEEECTT------------------------------------SSEEEEEECCC---CCCEEEEEEEETTE-
T ss_pred             --cCCCCcceEEcCC------------------------------------CCEEEEEecCCcCCCCCEEEEEEecCCC-
Confidence              3334577888887                                    4445555544      689999875432 


Q ss_pred             Cc--cc-cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecc
Q 012799          352 PK--TR-MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM  428 (456)
Q Consensus       352 ~~--~~-~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~  428 (456)
                      ..  .. .......+..++++++|++.++ +.+ .|.+|+. +++.+..+..+. .+.++                    
T Consensus       227 l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~--------------------  282 (305)
T 3dr2_A          227 LHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPG-TASNC--------------------  282 (305)
T ss_dssp             EEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TSCEEEEEECSS-CCCEE--------------------
T ss_pred             ccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CCCEEEEEECCC-ceeEE--------------------
Confidence            10  00 1112234567899999995444 444 4999997 677777776554 46666                    


Q ss_pred             cccccceeEecCCCeEEEeeCCCceEE
Q 012799          429 SCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       429 ~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                             +|+++++.|..++.++..++
T Consensus       283 -------~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          283 -------TFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             -------EECTTSCEEEEEETTEEEEE
T ss_pred             -------EEeCCCCEEEEEcCCeEEEE
Confidence                   78899998888887766554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.44  E-value=4.6e-11  Score=105.46  Aligned_cols=228  Identities=10%  Similarity=0.010  Sum_probs=147.3

Q ss_pred             cccCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799          103 TIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  181 (456)
                      .+..+........|+|+|+ ++++...++.|..|+.. ++ ...+..+...+..++++++|+++++...++.|.+|+.+ 
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-  115 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-  115 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence            3445566778899999998 56666678899999974 44 44555567789999999999976665566889999986 


Q ss_pred             CCCcccccc---C-cccceEEEEecccccCCCCCEEEE----EeC-------------CCcEEEEECCCCeEEEEecCcC
Q 012799          182 GKPSGNPLS---G-HKKWITGISWEPVHLNAPCRRFVS----ASK-------------DGDARIWDVSLRKCVICLSGHT  240 (456)
Q Consensus       182 ~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~  240 (456)
                      ++... ...   + ....+..+.+.+     +|+.+++    |..             .+.|..||..+++.....  ..
T Consensus       116 g~~~~-~~~~~~~~~~~~~~~i~~d~-----dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~  187 (305)
T 3dr2_A          116 GQAHL-LVGRYAGKRLNSPNDLIVAR-----DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL  187 (305)
T ss_dssp             SCEEE-EECEETTEECSCCCCEEECT-----TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred             CCEEE-EEeccCCCccCCCCCEEECC-----CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence            44321 111   1 112356788887     8887776    332             256788887666544333  34


Q ss_pred             ccEEEEEeCCCC-eEEEEeCC------CcEEEEECCCCeEEEE---ee-cCCcceEEEEecCcceeeeccccCCCCccCC
Q 012799          241 LAVTCVKWGGDG-VIYTGSQD------CTIKVWETTQGKLIRE---LK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSS  309 (456)
Q Consensus       241 ~~v~~~~~~~~~-~l~~~~~d------g~i~iwd~~~~~~~~~---~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  309 (456)
                      .....++|+|++ .|+++...      +.|..|++..+. +..   +. ........+++.++                 
T Consensus       188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~-----------------  249 (305)
T 3dr2_A          188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRG-----------------  249 (305)
T ss_dssp             SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTT-----------------
T ss_pred             CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCC-----------------
Confidence            456789999999 67776665      689999987654 211   11 01112233444443                 


Q ss_pred             hHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCc
Q 012799          310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS  383 (456)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~  383 (456)
                                         ++ +++++.+ .|.+|+.. + .....+..+. .+.+++|+|+++.|+.++.++.
T Consensus       250 -------------------G~-lwv~~~~-gv~~~~~~-g-~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          250 -------------------GW-LWSSSGT-GVCVFDSD-G-QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             -------------------SC-EEECCSS-EEEEECTT-S-CEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred             -------------------CC-EEEecCC-cEEEECCC-C-CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence                               44 5555544 49999963 3 2333333333 5889999999988888877653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.43  E-value=2.9e-11  Score=110.25  Aligned_cols=261  Identities=12%  Similarity=0.058  Sum_probs=165.1

Q ss_pred             CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEE
Q 012799          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG  198 (456)
Q Consensus       119 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~  198 (456)
                      ++..++.++.++.|..+|..+++.+...............  .+..++.++.++.|..+|.++|+........  ..+..
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~--~~~~~  177 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLD--MPSLS  177 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC--C----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC--CCcee
Confidence            3556778889999999999999988776644322222222  2457888889999999999999865422111  11110


Q ss_pred             E--EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc----EE---EEEeC---CCCeEEEEeCCCcEEEE
Q 012799          199 I--SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA----VT---CVKWG---GDGVIYTGSQDCTIKVW  266 (456)
Q Consensus       199 ~--~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----v~---~~~~~---~~~~l~~~~~dg~i~iw  266 (456)
                      .  ...|..   .+..+++++.++.+..+|..+++.+.........    +.   .+...   .++.+++++.++.+..+
T Consensus       178 ~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~  254 (376)
T 3q7m_A          178 LRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL  254 (376)
T ss_dssp             -CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred             ecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence            0  001111   2357888888999999999999887766432110    00   01111   14578888899999999


Q ss_pred             ECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEec
Q 012799          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (456)
Q Consensus       267 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  346 (456)
                      |..+++.+......  ....+...                                      +..++.++.++.+..+|.
T Consensus       255 d~~tG~~~w~~~~~--~~~~~~~~--------------------------------------~~~l~~~~~~g~l~~~d~  294 (376)
T 3q7m_A          255 DLRSGQIMWKRELG--SVNDFIVD--------------------------------------GNRIYLVDQNDRVMALTI  294 (376)
T ss_dssp             ETTTCCEEEEECCC--CEEEEEEE--------------------------------------TTEEEEEETTCCEEEEET
T ss_pred             ECCCCcEEeeccCC--CCCCceEE--------------------------------------CCEEEEEcCCCeEEEEEC
Confidence            99999887665422  12222222                                      445888889999999998


Q ss_pred             CCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeee
Q 012799          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV  426 (456)
Q Consensus       347 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~  426 (456)
                      .+++............+.....  .+..|+.++.+|.+.++|..+|+.+.........+...                  
T Consensus       295 ~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~------------------  354 (376)
T 3q7m_A          295 DGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTE------------------  354 (376)
T ss_dssp             TTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSC------------------
T ss_pred             CCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeC------------------
Confidence            7765433222111122222233  25678888899999999999999988776533333221                  


Q ss_pred             cccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       427 ~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                               . ...+..|+.++.||.|+.+
T Consensus       355 ---------~-~~~~~~l~v~~~~G~l~~~  374 (376)
T 3q7m_A          355 ---------P-VAADGKLLIQAKDGTVYSI  374 (376)
T ss_dssp             ---------C-EEETTEEEEEBTTSCEEEE
T ss_pred             ---------C-EEECCEEEEEeCCCEEEEE
Confidence                     1 1124678888899988764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.43  E-value=2.4e-11  Score=110.43  Aligned_cols=239  Identities=13%  Similarity=0.056  Sum_probs=157.9

Q ss_pred             EEEECCCCCeEEEEE----------CCCcEEEEeCCCCcceeEEecC-------CCCEEEEEEcCCCCEEEEEeC--CCe
Q 012799          113 SVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSADGKHLVSGSK--AGE  173 (456)
Q Consensus       113 ~~~~s~~~~~l~~~~----------~d~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--dg~  173 (456)
                      .++++|||++|+++.          .++.|.++|..+.+.+..+.-.       ......+.|+|||++++++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999888775          3678999999999988776521       234567899999999999874  578


Q ss_pred             EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE----ecCcCccE-EEEEe
Q 012799          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC----LSGHTLAV-TCVKW  248 (456)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v-~~~~~  248 (456)
                      |.+.|+.+++.+..+..+..     ....|.    ....+++.+.||.+.+.+..+++....    +.....++ ..+.+
T Consensus       202 VsVID~~t~kvv~~I~v~g~-----~~~~p~----g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~  272 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDC-----YHIFPA----SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAF  272 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSE-----EEEEEE----ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEE
T ss_pred             EEEEECCCCeEEEEEEcCCc-----eeeccC----CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeee
Confidence            99999999887653322111     122231    225667777888888888866554432    11111111 13456


Q ss_pred             CCCC-eEEEEeCCCcEEEEECCCCeEEE--Eeec---C-------CcceEEEEecCcceeeeccccCCCCccCChHHHHH
Q 012799          249 GGDG-VIYTGSQDCTIKVWETTQGKLIR--ELKG---H-------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (456)
Q Consensus       249 ~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~---~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (456)
                      .+++ .++.....+.+.+.|+..+....  .+..   .       ......++++++                       
T Consensus       273 ~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d-----------------------  329 (426)
T 3c75_H          273 SLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ-----------------------  329 (426)
T ss_dssp             CTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG-----------------------
T ss_pred             cCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC-----------------------
Confidence            7777 66666778899999987654221  1110   0       011112456665                       


Q ss_pred             HHHhhhhhccCCCCCEEEEEeC----------CCcEEEEecCCCCCCccccccccccEeEEEECCCCC-EEEEEE-CCCc
Q 012799          316 AALERYNKIKGNAPERLVSGSD----------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS-FDKS  383 (456)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~-~dg~  383 (456)
                                   +.++++...          ++.|.++|..+.+.......+  .....++|+|||+ ++++.. .++.
T Consensus       330 -------------g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~  394 (426)
T 3c75_H          330 -------------SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQT  394 (426)
T ss_dssp             -------------GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTE
T ss_pred             -------------CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCe
Confidence                         333444331          357999997766543332222  2488999999999 888887 5899


Q ss_pred             EEEEeCCCCeEEEEE
Q 012799          384 IKLWNGTTGKFVAVF  398 (456)
Q Consensus       384 i~iwd~~~~~~~~~~  398 (456)
                      |.++|+.+++.+.++
T Consensus       395 VsVID~~t~kvv~tI  409 (426)
T 3c75_H          395 LHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEETTTCCEEEEE
T ss_pred             EEEEECCCCCEEEEe
Confidence            999999999999887

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.42  E-value=2.1e-10  Score=102.18  Aligned_cols=222  Identities=12%  Similarity=0.011  Sum_probs=141.9

Q ss_pred             cEEEEEECCCC-CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          110 AVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       110 ~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      -..+.+|+|++ .++++...++.|..||..+++.. .+. ....+.+++|+++|+++++. .+ .|.+||..+++.....
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence            35678999975 45566667789999999876533 333 45679999999999877754 44 5999999887643211


Q ss_pred             cc---CcccceEEEEecccccCCCCCEEEEEeC------CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE-
Q 012799          189 LS---GHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG-  257 (456)
Q Consensus       189 ~~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-  257 (456)
                      ..   .....+.++.++|     +|+.+++...      .+.|..++  +++... +.........++|++++ .++.+ 
T Consensus       126 ~~~~~~~~~~~~~i~~d~-----~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~  197 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHP-----SGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVD  197 (326)
T ss_dssp             CSSTTCTTEEEEEEEECT-----TSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEE
T ss_pred             eCCCCCCCCCCCCEEECC-----CCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEE
Confidence            11   1124578889988     8876665432      24566666  454332 22233456789999998 55444 


Q ss_pred             eCCCcEEEEECC--CC-e-----EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799          258 SQDCTIKVWETT--QG-K-----LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (456)
Q Consensus       258 ~~dg~i~iwd~~--~~-~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (456)
                      +.++.|.+||+.  ++ +     ....+.........+++.++                                    +
T Consensus       198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~------------------------------------G  241 (326)
T 2ghs_A          198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE------------------------------------G  241 (326)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT------------------------------------S
T ss_pred             CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC------------------------------------C
Confidence            457899999986  55 2     12222222334456666655                                    4


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEEC-CCCCEEEEEECC
Q 012799          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS-PDGQWVASASFD  381 (456)
Q Consensus       330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~s~~~d  381 (456)
                      .+.++...++.|..||. .+ .....+..+...+++++|+ |+++.|+.++..
T Consensus       242 ~lwva~~~~~~v~~~d~-~g-~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          242 HIWNARWGEGAVDRYDT-DG-NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             CEEEEEETTTEEEEECT-TC-CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CEEEEEeCCCEEEEECC-CC-CEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            44555556788999996 33 3334444555679999998 888776555433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.40  E-value=2.4e-11  Score=119.03  Aligned_cols=280  Identities=13%  Similarity=0.103  Sum_probs=170.0

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCCC----------E-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----------V-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      +..+++++.++.|..+|..+++.+.++......          + ..++.  .+..+++++.|+.|..+|.++|+.+...
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            556777778899999999999998887543221          0 11222  4568888999999999999999876533


Q ss_pred             ccC-cccceEEEEecccccCCCCCEEEEEe------CCCcEEEEECCCCeEEEEecCcC---------------------
Q 012799          189 LSG-HKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLSGHT---------------------  240 (456)
Q Consensus       189 ~~~-~~~~v~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~---------------------  240 (456)
                      ... +......+...|..   .+..+++++      .+|.|+.||..+++.+..+....                     
T Consensus       148 ~~~~~~~~~~~~~~sP~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g  224 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRV---VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG  224 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred             cCcCCCCCCccccCCcEE---ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence            222 11111111112211   123455543      36899999999999887764210                     


Q ss_pred             ----------ccEEEEEeCCCC-eEEEEeCCCc-------------------EEEEECCCCeEEEEeecCCcceEEEEec
Q 012799          241 ----------LAVTCVKWGGDG-VIYTGSQDCT-------------------IKVWETTQGKLIRELKGHGHWVNSLALS  290 (456)
Q Consensus       241 ----------~~v~~~~~~~~~-~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~i~~~~~~  290 (456)
                                .....+++++++ .++.+..++.                   |..+|.++|+.+..++............
T Consensus       225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~  304 (689)
T 1yiq_A          225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT  304 (689)
T ss_dssp             STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred             ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence                      001246777765 8888877763                   9999999999988876432211110000


Q ss_pred             CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc-----------
Q 012799          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-----------  359 (456)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------  359 (456)
                      ....+.....+                        +.....++.++.+|.++++|..+++.........           
T Consensus       305 ~~~~l~d~~~~------------------------G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~  360 (689)
T 1yiq_A          305 QHMILAELPID------------------------GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT  360 (689)
T ss_dssp             SCEEEEEEEET------------------------TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred             CCcEEEeeccC------------------------CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence            00000000000                        0001258889999999999977665431100000           


Q ss_pred             ----------------cc-----------cEeEEEECCCCCEEEEEEC--------------------------------
Q 012799          360 ----------------QQ-----------LVNHVYFSPDGQWVASASF--------------------------------  380 (456)
Q Consensus       360 ----------------~~-----------~v~~~~~sp~~~~l~s~~~--------------------------------  380 (456)
                                      ..           .-..++|+|+..++++...                                
T Consensus       361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  440 (689)
T 1yiq_A          361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP  440 (689)
T ss_dssp             TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred             CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence                            00           0123788998888776532                                


Q ss_pred             -------------CCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEe
Q 012799          381 -------------DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG  447 (456)
Q Consensus       381 -------------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~  447 (456)
                                   +|.|..||+.+|+.+..+..+.. ...-                           .++..+.+++.|
T Consensus       441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g---------------------------~~~tagglvf~g  492 (689)
T 1yiq_A          441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGG---------------------------TLSTAGNLVFEG  492 (689)
T ss_dssp             SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCC---------------------------EEEETTTEEEEE
T ss_pred             cccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCc---------------------------cceECCCEEEEE
Confidence                         37799999999998888765432 2222                           456678888889


Q ss_pred             eCCCceEEC
Q 012799          448 SKDSTLKVT  456 (456)
Q Consensus       448 s~Dg~v~iW  456 (456)
                      +.||.++.|
T Consensus       493 t~dg~l~a~  501 (689)
T 1yiq_A          493 SADGRVIAY  501 (689)
T ss_dssp             CTTSEEEEE
T ss_pred             CCCCcEEEE
Confidence            999998875

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.37  E-value=1.8e-11  Score=109.35  Aligned_cols=262  Identities=15%  Similarity=0.087  Sum_probs=163.6

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  186 (456)
                      +...+.++...++|.++ .++.+  +..+|. +++.+..+...........+.  +..++.++.++.+..+|.. ++...
T Consensus        58 ~~~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~  130 (330)
T 3hxj_A           58 GEIIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKW  130 (330)
T ss_dssp             GGEEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEE
T ss_pred             CCCcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEE
Confidence            34556778888777644 44444  888886 555554443333222333333  5567888889999999988 65433


Q ss_pred             ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEE
Q 012799          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW  266 (456)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iw  266 (456)
                      . .......+.++...+     ++ .+..++.++.|..+|.. ++....+......+.++...+++.+++++  +.|..+
T Consensus       131 ~-~~~~~~~~~~~~~~~-----~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~  200 (330)
T 3hxj_A          131 R-FKTKKAIYATPIVSE-----DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAI  200 (330)
T ss_dssp             E-EECSSCCCSCCEECT-----TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEE
T ss_pred             E-EcCCCceeeeeEEcC-----CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEE
Confidence            2 222222333333332     44 47778888999999998 77776666555667777787788777777  889999


Q ss_pred             ECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEec
Q 012799          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (456)
Q Consensus       267 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  346 (456)
                      | .+++...........+.++...++                                     ..++.++.++.+..+|.
T Consensus       201 d-~~g~~~~~~~~~~~~~~~~~~~~~-------------------------------------g~l~v~t~~~gl~~~~~  242 (330)
T 3hxj_A          201 N-PDGTEKWNFYAGYWTVTRPAISED-------------------------------------GTIYVTSLDGHLYAINP  242 (330)
T ss_dssp             C-TTSCEEEEECCSSCCCSCCEECTT-------------------------------------SCEEEEETTTEEEEECT
T ss_pred             C-CCCcEEEEEccCCcceeceEECCC-------------------------------------CeEEEEcCCCeEEEECC
Confidence            9 777777666544444555555443                                     23777888888888873


Q ss_pred             CCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeee
Q 012799          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV  426 (456)
Q Consensus       347 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~  426 (456)
                       .+.. ..........+..+.+.+++. |..++.+|.+..+|. +++.+..+......+.++                  
T Consensus       243 -~g~~-~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~------------------  300 (330)
T 3hxj_A          243 -DGTE-KWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATP------------------  300 (330)
T ss_dssp             -TSCE-EEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCC------------------
T ss_pred             -CCCE-eEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccce------------------
Confidence             3332 222333333344566666664 666778888999995 777776665443334333                  


Q ss_pred             cccccccceeEecCCCeEEEeeCCCceEE
Q 012799          427 DMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (456)
Q Consensus       427 ~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i  455 (456)
                               ...++|+ |..++.+|.+++
T Consensus       301 ---------~~d~~g~-l~~gt~~G~~~~  319 (330)
T 3hxj_A          301 ---------VIDENGT-IYFGTRNGKFYA  319 (330)
T ss_dssp             ---------EECTTCC-EEEECTTSCEEE
T ss_pred             ---------EEcCCCE-EEEEcCCCeEEE
Confidence                     5567765 555888888865

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.36  E-value=5.5e-11  Score=116.19  Aligned_cols=271  Identities=12%  Similarity=0.075  Sum_probs=169.8

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCCC-----------EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW-----------VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      +..+++++.++.|..+|..+++.+.++......           ...+++  ++..|++++.|+.|..+|..+|+.+...
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            456777777889999999999988877643210           112333  4668888899999999999999876532


Q ss_pred             ccC-cccceEEEEecccccCCCCCEEEEEeC------CCcEEEEECCCCeEEEEecCcCcc-------------------
Q 012799          189 LSG-HKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLA-------------------  242 (456)
Q Consensus       189 ~~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~-------------------  242 (456)
                      ... .......+.-.|..   .+..+++++.      +|.|+.+|..+++.+..+......                   
T Consensus       155 ~~~~~~~~~~~~~~~p~v---~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~  231 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP  231 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred             cCCcCcCcCcccccCcEE---ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence            221 00000011111111   2345555553      689999999999998777432111                   


Q ss_pred             -------------EEEEEeCCCC-eEEEEeCCC-------------------cEEEEECCCCeEEEEeecCCcce-----
Q 012799          243 -------------VTCVKWGGDG-VIYTGSQDC-------------------TIKVWETTQGKLIRELKGHGHWV-----  284 (456)
Q Consensus       243 -------------v~~~~~~~~~-~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~i-----  284 (456)
                                   ...+++++++ .++.+..++                   .|..+|.++|+.+..++......     
T Consensus       232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~  311 (677)
T 1kb0_A          232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS  311 (677)
T ss_dssp             GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred             cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence                         1246777766 777776654                   59999999999988776422110     


Q ss_pred             ----EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc-
Q 012799          285 ----NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-  359 (456)
Q Consensus       285 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-  359 (456)
                          ..+....++.                                 ....++.++.+|.++++|..+++......... 
T Consensus       312 ~~~p~l~~~~~dG~---------------------------------~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~  358 (677)
T 1kb0_A          312 TQPMILADIKIAGK---------------------------------PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV  358 (677)
T ss_dssp             CSCCEEEEEEETTE---------------------------------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred             CCCcEEEecccCCc---------------------------------EeeEEEEECCCCEEEEEECCCCCEecccccccc
Confidence                0011111100                                 01458899999999999977665432211110 


Q ss_pred             ---------cccE------------------------eEEEECCCCCEEEEEEC--------------------------
Q 012799          360 ---------QQLV------------------------NHVYFSPDGQWVASASF--------------------------  380 (456)
Q Consensus       360 ---------~~~v------------------------~~~~~sp~~~~l~s~~~--------------------------  380 (456)
                               ..++                        ..++++|++.++++...                          
T Consensus       359 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  438 (677)
T 1kb0_A          359 NWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT  438 (677)
T ss_dssp             SSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred             CcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccc
Confidence                     0011                        25788998888877543                          


Q ss_pred             -----------------CCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCe
Q 012799          381 -----------------DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL  443 (456)
Q Consensus       381 -----------------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  443 (456)
                                       .|.|..||+.+|+.+..+.. ..++...                           .++.++..
T Consensus       439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g---------------------------~~~~~g~~  490 (677)
T 1kb0_A          439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGG---------------------------TLTTAGNV  490 (677)
T ss_dssp             TCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCC---------------------------EEEETTTE
T ss_pred             ccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCc---------------------------ceEeCCCE
Confidence                             27899999999998887763 2333333                           45677788


Q ss_pred             EEEeeCCCceEEC
Q 012799          444 LLSGSKDSTLKVT  456 (456)
Q Consensus       444 l~s~s~Dg~v~iW  456 (456)
                      ++.++.||.+++|
T Consensus       491 v~~g~~dg~l~a~  503 (677)
T 1kb0_A          491 VFQGTADGRLVAY  503 (677)
T ss_dssp             EEEECTTSEEEEE
T ss_pred             EEEECCCCcEEEE
Confidence            8888889988865

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.36  E-value=7.9e-10  Score=100.70  Aligned_cols=231  Identities=9%  Similarity=0.029  Sum_probs=149.1

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecC---------CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGH---------KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS  190 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  190 (456)
                      +..+++++.++.|..+|..+++.+......         ...+.+. ...++..++.++.++.|..+|.++|+.......
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            567778888899999999999988766542         1223221 112456788889999999999999986542211


Q ss_pred             CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccE-----EEEEeCCCCeEEEEeCCCcEEE
Q 012799          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-----TCVKWGGDGVIYTGSQDCTIKV  265 (456)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~l~~~~~dg~i~i  265 (456)
                      . . .+.   -.|..   .+..+++++.++.|..+|..+++.+..........     ...... ++.+++++.++.+..
T Consensus       132 ~-~-~~~---~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~  202 (376)
T 3q7m_A          132 A-G-EAL---SRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVSA  202 (376)
T ss_dssp             S-S-CCC---SCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEEE
T ss_pred             C-C-ceE---cCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEEE
Confidence            1 1 110   01111   34578888999999999999998887765432111     111122 458888899999999


Q ss_pred             EECCCCeEEEEeecCCcc----eEE---EEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799          266 WETTQGKLIRELKGHGHW----VNS---LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (456)
Q Consensus       266 wd~~~~~~~~~~~~~~~~----i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (456)
                      +|..+++.+.........    +..   +...|.                                  ..+..++.++.+
T Consensus       203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~----------------------------------~~~~~v~~~~~~  248 (376)
T 3q7m_A          203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV----------------------------------VVNGVVFALAYN  248 (376)
T ss_dssp             EETTTCCEEEEEECCC-----------CCCCCCE----------------------------------EETTEEEEECTT
T ss_pred             EECCCCcEEEEEecccCCCCcccccccccCCCcE----------------------------------EECCEEEEEecC
Confidence            999999988776532110    000   000010                                  014558888889


Q ss_pred             CcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       339 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  399 (456)
                      +.+..+|..+++......   ......+..  ++..|+.++.+|.+..+|..+|+.+....
T Consensus       249 g~l~~~d~~tG~~~w~~~---~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          249 GNLTALDLRSGQIMWKRE---LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             SCEEEEETTTCCEEEEEC---CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred             cEEEEEECCCCcEEeecc---CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence            999999977665433221   122344444  46678888899999999999999877665

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.35  E-value=9.9e-11  Score=114.66  Aligned_cols=153  Identities=14%  Similarity=0.171  Sum_probs=99.4

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecC--CCCEEEEEEcC---CCCEEEEEe------CCCeEEEEeCCCCCCcccc
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGH--KNWVLCIAWSA---DGKHLVSGS------KAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~---~~~~l~s~~------~dg~i~vwd~~~~~~~~~~  188 (456)
                      +..++.++.|+.|..+|..+++.+......  ......+..+|   ++ .+++++      .+|.|..||.++|+.+...
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            557888889999999999999988776542  11111111122   44 444443      3789999999999875432


Q ss_pred             ccCc------------------------------ccceEEEEecccccCCCCCEEEEEeCCCc-----------------
Q 012799          189 LSGH------------------------------KKWITGISWEPVHLNAPCRRFVSASKDGD-----------------  221 (456)
Q Consensus       189 ~~~~------------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~dg~-----------------  221 (456)
                      ....                              ......+++.|     +...++.++.++.                 
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-----~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~  274 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-----ELNLLYIGVGNGSLWDPKWRSQAKGDNLFL  274 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-----TTTEEEEECCCEESSCHHHHHTTCSCCTTT
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-----CCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence            2100                              00011345555     6778888887763                 


Q ss_pred             --EEEEECCCCeEEEEecC--cC-------ccEEEEEeCCCC----eEEEEeCCCcEEEEECCCCeEEEEee
Q 012799          222 --ARIWDVSLRKCVICLSG--HT-------LAVTCVKWGGDG----VIYTGSQDCTIKVWETTQGKLIRELK  278 (456)
Q Consensus       222 --i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~  278 (456)
                        |..+|..+++.+..+..  |.       .+........+|    .++.++.+|.++++|.++|+.+....
T Consensus       275 ~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~  346 (689)
T 1yiq_A          275 SSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKG  346 (689)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             eeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccc
Confidence              99999999999887753  21       122222222233    58888999999999999999886544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.34  E-value=2.5e-11  Score=108.58  Aligned_cols=243  Identities=10%  Similarity=-0.023  Sum_probs=156.3

Q ss_pred             cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCCCccccccC-c-----cc
Q 012799          131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTGKPSGNPLSG-H-----KK  194 (456)
Q Consensus       131 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~-~-----~~  194 (456)
                      +|.++|..+++.+.++.....+  .+.++||+++++++.          .++.|.+||+.+++....+..+ .     ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7889999999999998766666  799999999999886          3688999999999877643222 0     12


Q ss_pred             ceEEEEecccccCCCCCEEEEEeC--CCcEEE--EECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEEC
Q 012799          195 WITGISWEPVHLNAPCRRFVSASK--DGDARI--WDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWET  268 (456)
Q Consensus       195 ~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~  268 (456)
                      ....+.++|     +|++++++..  +..+.+  +|..+   +..+... ..   ....|++  .+++.+.||.+.+.|+
T Consensus       125 ~P~~ia~Sp-----DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~  192 (368)
T 1mda_H          125 RVHIIGNCA-----SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             CTTSEEECT-----TSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEEC
T ss_pred             CcceEEEcC-----CCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEEC
Confidence            345778888     9999998875  457888  88877   3333211 11   1123444  5667778888888888


Q ss_pred             CC-----CeEEEE----eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799          269 TQ-----GKLIRE----LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (456)
Q Consensus       269 ~~-----~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  339 (456)
                      .+     ++....    +.....+.   . .++                                    +..++..+. +
T Consensus       193 ~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~------------------------------------~~~~~~vs~-~  231 (368)
T 1mda_H          193 AAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANY------------------------------------PGMLVWAVA-S  231 (368)
T ss_dssp             CSSCCCCEECCCCSCTTSCBCSCCE---E-ETT------------------------------------TTEEEECBS-S
T ss_pred             ccccccCCeEEEEeeeeeeCCCCcc---c-ccc------------------------------------CCEEEEEcC-C
Confidence            76     332210    11111111   1 111                                    333555555 8


Q ss_pred             cEEEEecCCCCCC-ccccc-------cc---cccEeEEEECCCCCEEEEEEC---------CCcEEEEeCCCCeEEEEEe
Q 012799          340 TMFLWEPAVSKQP-KTRMT-------GH---QQLVNHVYFSPDGQWVASASF---------DKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       340 ~i~iwd~~~~~~~-~~~~~-------~~---~~~v~~~~~sp~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~  399 (456)
                      .+.+.|....... ...+.       .+   ......++++|+++.++.+..         ++.+.++|+.+++.+..+.
T Consensus       232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~  311 (368)
T 1mda_H          232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS  311 (368)
T ss_dssp             CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred             EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence            9999997543211 11110       01   111222689999998776543         2356799999999988876


Q ss_pred             cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEee-CCCceEEC
Q 012799          400 GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVT  456 (456)
Q Consensus       400 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s-~Dg~v~iW  456 (456)
                      ... ....+                           +|+|||+ .+++.. .++.|.|+
T Consensus       312 vg~-~p~gi---------------------------~~s~Dg~~l~va~~~~~~~VsVI  342 (368)
T 1mda_H          312 NGH-DSDAI---------------------------IAAQDGASDNYANSAGTEVLDIY  342 (368)
T ss_dssp             EEE-EECEE---------------------------EECCSSSCEEEEEETTTTEEEEE
T ss_pred             CCC-CcceE---------------------------EECCCCCEEEEEccCCCCeEEEE
Confidence            443 45666                           8899998 456666 58888764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.33  E-value=1.8e-10  Score=113.62  Aligned_cols=213  Identities=11%  Similarity=0.082  Sum_probs=128.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-----CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC---
Q 012799          149 HKNWVLCIAWSADGKHLVSGS-----KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG---  220 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---  220 (456)
                      |...+..++|||||++||.+.     ....|++||+.+++....    +   +..+.+.....+ |++.|+.++.+.   
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~----~---~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~  198 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET----P---LKDVKFSGISWL-GNEGFFYSSYDKPDG  198 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE----E---EEEEESCCCEEE-TTTEEEEEESSCCC-
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc----c---cCCceeccEEEe-CCCEEEEEEecCccc
Confidence            556788999999999988543     234799999999885431    1   222222222334 667888887774   


Q ss_pred             ----------cEEEEECCCCe----EEEEecC-cCccEEEEEeCCCC-eE-EEEeC---CCcEEEEECCCCe-EEEEeec
Q 012799          221 ----------DARIWDVSLRK----CVICLSG-HTLAVTCVKWGGDG-VI-YTGSQ---DCTIKVWETTQGK-LIRELKG  279 (456)
Q Consensus       221 ----------~i~iwd~~~~~----~~~~~~~-~~~~v~~~~~~~~~-~l-~~~~~---dg~i~iwd~~~~~-~~~~~~~  279 (456)
                                .|++|++.+..    .+..... +......+.|+|+| .+ ++...   ++.|+++|+.++. ....+..
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~  278 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG  278 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred             ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence                      39999997654    3333333 44567889999999 44 33332   2589999997763 3344444


Q ss_pred             CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC---CCcEEEEecCCCCC-Cccc
Q 012799          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DFTMFLWEPAVSKQ-PKTR  355 (456)
Q Consensus       280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~-~~~~  355 (456)
                      +....... +++++                                   +.+++....   .+.|..+|+..... ....
T Consensus       279 ~~~~~~~~-~~~~g-----------------------------------~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~  322 (693)
T 3iuj_A          279 DLDADVSL-VDNKG-----------------------------------STLYLLTNRDAPNRRLVTVDAANPGPAHWRD  322 (693)
T ss_dssp             SSSSCEEE-EEEET-----------------------------------TEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred             CCCceEEE-EeccC-----------------------------------CEEEEEECCCCCCCEEEEEeCCCCCccccEE
Confidence            44444333 33331                                   222334333   36789999776542 1233


Q ss_pred             cccccccEeEEEECCCCCEEEEEECCC---cEEEEeCCCCeEEEEEe-cccccEEEE
Q 012799          356 MTGHQQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFR-GHVGPVYQI  408 (456)
Q Consensus       356 ~~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~-~~~~~v~~i  408 (456)
                      +..|...+.  .|++++++|+....++   .|++|++..+. ...+. ...+.+..+
T Consensus       323 l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~  376 (693)
T 3iuj_A          323 LIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGF  376 (693)
T ss_dssp             EECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEEC
T ss_pred             EecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEee
Confidence            445555554  8899998877665544   68999987544 34443 233445555

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.30  E-value=1.7e-10  Score=103.17  Aligned_cols=246  Identities=11%  Similarity=-0.003  Sum_probs=154.4

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEE----------CCCcEEEEeCCCCcceeEEecC-------CCCEEEEEEcCCCCE
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSADGKH  164 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~----------~d~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~  164 (456)
                      .++.....+  .++++||+++++++.          .++.|.+||..+++.+.++...       ......++++|||++
T Consensus        60 ~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~  137 (368)
T 1mda_H           60 GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC  137 (368)
T ss_dssp             EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC
T ss_pred             EEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCE
Confidence            334333345  799999999988886          3678999999999999888633       134668999999999


Q ss_pred             EEEEeC--CCeEEE--EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-----CeEEEE
Q 012799          165 LVSGSK--AGELQC--WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----RKCVIC  235 (456)
Q Consensus       165 l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~  235 (456)
                      ++++..  +..+.+  +|..+   ......+  +.   ....|.    ....+++.+.||.+.+.|+.+     ++....
T Consensus       138 lyVan~~~~~~v~V~~iD~~t---v~~i~v~--~~---~~~~p~----g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~  205 (368)
T 1mda_H          138 LLFFLFGSSAAAGLSVPGASD---DQLTKSA--SC---FHIHPG----AAATHYLGSCPASLAASDLAAAPAAAGIVGAQ  205 (368)
T ss_dssp             EEEEECSSSCEEEEEETTTEE---EEEEECS--SC---CCCEEE----ETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred             EEEEccCCCCeEEEEEEchhh---ceEEECC--Cc---eEEccC----CCeEEEEEcCCCCEEEEECccccccCCeEEEE
Confidence            999875  467888  99876   2111111  10   111221    224556667788888888876     332211


Q ss_pred             ----ecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCe--EEEEeecCC----------cceEEEEecCcceeeecc
Q 012799          236 ----LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK--LIRELKGHG----------HWVNSLALSTEYALRTGA  299 (456)
Q Consensus       236 ----~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~----------~~i~~~~~~~~~~~~~~~  299 (456)
                          +.-...+.   .....+.++..+. +.+.+.|+..+.  .+..+....          .....+.++++       
T Consensus       206 ~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d-------  274 (368)
T 1mda_H          206 CTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN-------  274 (368)
T ss_dssp             SCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT-------
T ss_pred             eeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC-------
Confidence                11112333   3333445555566 999999986532  333222110          01111456665       


Q ss_pred             ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC---------CCcEEEEecCCCCCCccccccccccEeEEEECC
Q 012799          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (456)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp  370 (456)
                                                   +.+++.+..         ++.+.++|+.+.+.. ..+... .....++|+|
T Consensus       275 -----------------------------g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv-~~i~vg-~~p~gi~~s~  323 (368)
T 1mda_H          275 -----------------------------TDGIMILTVEHSRSCLAAAENTSSVTASVGQTS-GPISNG-HDSDAIIAAQ  323 (368)
T ss_dssp             -----------------------------TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE-ECCEEE-EEECEEEECC
T ss_pred             -----------------------------CCEEEEEeccccCcccccCCCEEEEECCCCeEE-EEEECC-CCcceEEECC
Confidence                                         444554432         235669998776543 333222 2588999999


Q ss_pred             CCC-EEEEEE-CCCcEEEEeCCCCeEEEEEecccc
Q 012799          371 DGQ-WVASAS-FDKSIKLWNGTTGKFVAVFRGHVG  403 (456)
Q Consensus       371 ~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~  403 (456)
                      ||+ ++++.. .++.|.++|+.+++.+..+.....
T Consensus       324 Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~  358 (368)
T 1mda_H          324 DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG  358 (368)
T ss_dssp             SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred             CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence            998 466666 599999999999999998875544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.30  E-value=1.6e-12  Score=117.74  Aligned_cols=207  Identities=10%  Similarity=0.027  Sum_probs=114.1

Q ss_pred             CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEE
Q 012799          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG  198 (456)
Q Consensus       119 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~  198 (456)
                      ++..+++++.||.|+.||..+++.+..+..  +.+.+..+..++..+++++.||.|..||.++|+............+  
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~--   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV--   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc--
Confidence            577899999999999999999999988875  5555555666787888888999999999998876542211111111  


Q ss_pred             EEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEe
Q 012799          199 ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL  277 (456)
Q Consensus       199 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~  277 (456)
                       ...|. . ..+..+++++.++.++.||..+++.+..+..+..    ..++|++ .+++++.++.|+.||.++|+.+..+
T Consensus        84 -~~sp~-~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A           84 -QASPC-R-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             -TTCSC-C------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred             -ccCce-E-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence             00111 0 0345678888899999999999998877765432    2334455 8888999999999999999876555


Q ss_pred             ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc
Q 012799          278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT  357 (456)
Q Consensus       278 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  357 (456)
                      ....  .....+..+.                                 .....+++++.||.++.||..+++.... ..
T Consensus       157 ~~~~--~~~~~~~~~~---------------------------------~~~~~v~~~~~dg~v~a~d~~tG~~~W~-~~  200 (369)
T 2hz6_A          157 TYFD--YAASLPEDDV---------------------------------DYKMSHFVSNGDGLVVTVDSESGDVLWI-QN  200 (369)
T ss_dssp             EEEE--ECCBCCCCCT---------------------------------TCCCCEEEEETSCEEEEECTTTCCEEEE-EE
T ss_pred             eccc--ccCccccCCc---------------------------------cccceEEEECCCCEEEEEECCCCcEEEE-ec
Confidence            4211  0111111110                                 0024578889999999999876654332 22


Q ss_pred             cccccE-eEEEECCCCC
Q 012799          358 GHQQLV-NHVYFSPDGQ  373 (456)
Q Consensus       358 ~~~~~v-~~~~~sp~~~  373 (456)
                       ...++ ....++++|.
T Consensus       201 -~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          201 -YASPVVAFYVWQREGL  216 (369)
T ss_dssp             -CSSCEEEEEECTTSSC
T ss_pred             -CCCceEEEEEecCCce
Confidence             22333 3345566664

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.29  E-value=1.4e-12  Score=118.16  Aligned_cols=195  Identities=14%  Similarity=0.098  Sum_probs=110.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC
Q 012799          161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT  240 (456)
Q Consensus       161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  240 (456)
                      ++..+++++.||.|..||..+|+.......   ..+.+..+..     ++..+++++.||.|+.||..+++.+..+..+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~-----~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~   79 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHV-----EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI   79 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC----------CCEEECTTTCCEEEC-----CCSEECSCCH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEc-----CCCEEEEeCCCCEEEEEECCCCceeeeeeccC
Confidence            677899999999999999999987653222   2333222222     56678888899999999999888766664332


Q ss_pred             cc-EE-EEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799          241 LA-VT-CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (456)
Q Consensus       241 ~~-v~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (456)
                      .. +. ...+..++.+++++.++.++.||..+|+.+..+..+..    ..++|                           
T Consensus        80 ~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p---------------------------  128 (369)
T 2hz6_A           80 PELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP---------------------------  128 (369)
T ss_dssp             HHHHTTCSCC-----CCCCEEEEEEEEECCC-------------------------------------------------
T ss_pred             ccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc---------------------------
Confidence            11 10 01111345788889999999999999998877654321    11222                           


Q ss_pred             hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC---CEEEEEECCCcEEEEeCCCCeEE
Q 012799          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG---QWVASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~s~~~dg~i~iwd~~~~~~~  395 (456)
                               .+..+++++.|+.|+.||..+++..... ..+.  ....+++++.   ..+++++.||.++.||..+|+.+
T Consensus       129 ---------~~~~v~~~~~dg~v~a~d~~tG~~~W~~-~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          129 ---------STSLLYLGRTEYTITMYDTKTRELRWNA-TYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             -------------EEEEEEEEEEECCCSSSSSCCCEE-EEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             ---------cCCEEEEEecCCEEEEEECCCCCEEEeE-eccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence                     2456888999999999998776644332 1111  2233344432   45777889999999999999998


Q ss_pred             EEEecccccEEE
Q 012799          396 AVFRGHVGPVYQ  407 (456)
Q Consensus       396 ~~~~~~~~~v~~  407 (456)
                      ..+.. ..++..
T Consensus       197 W~~~~-~~pv~~  207 (369)
T 2hz6_A          197 WIQNY-ASPVVA  207 (369)
T ss_dssp             EEEEC-SSCEEE
T ss_pred             EEecC-CCceEE
Confidence            87763 344433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.26  E-value=3.6e-10  Score=110.50  Aligned_cols=239  Identities=13%  Similarity=0.090  Sum_probs=152.3

Q ss_pred             CCCeEEEEECCCcEEEEeCCCCcceeEEecC-C----CCEEE-EEEcCCCCEEEEEeC------CCeEEEEeCCCCCCcc
Q 012799          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGH-K----NWVLC-IAWSADGKHLVSGSK------AGELQCWDPQTGKPSG  186 (456)
Q Consensus       119 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~----~~v~~-~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~  186 (456)
                      ++..++.++.|+.|..+|..+++.+..+..+ .    ..+.+ ...  .+..+++++.      +|.|..+|.++|+.+.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            3567888889999999999999998887754 1    11211 111  2345555543      6899999999998654


Q ss_pred             ccccCcc-------------------------------cceEEEEecccccCCCCCEEEEEeCCC---------------
Q 012799          187 NPLSGHK-------------------------------KWITGISWEPVHLNAPCRRFVSASKDG---------------  220 (456)
Q Consensus       187 ~~~~~~~-------------------------------~~v~~~~~~~~~~~~~~~~l~~~~~dg---------------  220 (456)
                      .......                               .....+++.|     ++..++.++.++               
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-----~~~~vy~~~~~~~~w~~~~~~~~~gd~  279 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-----ELNTMYVGTGNGSPWSHKVRSPKGGDN  279 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-----TTTEEEEECCCEESSCHHHHSTTCCCC
T ss_pred             EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-----CCCEEEEECCCCccccCCCCCccCCCC
Confidence            3211100                               0112345555     677888777654               


Q ss_pred             ----cEEEEECCCCeEEEEecC--cC-------ccEEEEEeCCCC----eEEEEeCCCcEEEEECCCCeEEEEeecCCcc
Q 012799          221 ----DARIWDVSLRKCVICLSG--HT-------LAVTCVKWGGDG----VIYTGSQDCTIKVWETTQGKLIRELKGHGHW  283 (456)
Q Consensus       221 ----~i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  283 (456)
                          .|..+|..+++.+..+..  |.       .....+....+|    .++.++.+|.++++|..+|+.+..+......
T Consensus       280 ~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~  359 (677)
T 1kb0_A          280 LYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN  359 (677)
T ss_dssp             TTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred             eeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC
Confidence                599999999998877653  21       111222222233    6888999999999999999998776532211


Q ss_pred             -eE----------------------------------EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799          284 -VN----------------------------------SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (456)
Q Consensus       284 -i~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (456)
                       ..                                  .++++|+.                                   
T Consensus       360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-----------------------------------  404 (677)
T 1kb0_A          360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-----------------------------------  404 (677)
T ss_dssp             SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-----------------------------------
T ss_pred             cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-----------------------------------
Confidence             11                                  12233321                                   


Q ss_pred             CCEEEEEe-------------------------------------------CCCcEEEEecCCCCCCccccccccccEeE
Q 012799          329 PERLVSGS-------------------------------------------DDFTMFLWEPAVSKQPKTRMTGHQQLVNH  365 (456)
Q Consensus       329 ~~~l~~~~-------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  365 (456)
                       .++++..                                           ..|.|..||+.+++......  +..++..
T Consensus       405 -~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~  481 (677)
T 1kb0_A          405 -GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNG  481 (677)
T ss_dssp             -TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCC
T ss_pred             -CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcC
Confidence             2222211                                           23789999987765443322  2233444


Q ss_pred             EEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccc
Q 012799          366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV  402 (456)
Q Consensus       366 ~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  402 (456)
                      ..+..++.+++.++.||.+++||..+|+.+..+....
T Consensus       482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~  518 (677)
T 1kb0_A          482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (677)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence            4566678889999999999999999999999987543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.21  E-value=2.2e-09  Score=95.70  Aligned_cols=218  Identities=15%  Similarity=0.090  Sum_probs=145.9

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI  199 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  199 (456)
                      +..+..++.++.+..+|.. ++.......+...+.++...+++. ++.++.++.|..+|.. ++.... .......+.++
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~-~~~~~~~~~~~  182 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR-FKTNDAITSAA  182 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE-EECSSCCCSCC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE-EecCCCceeee
Confidence            4457778888999999988 777766665666667777776776 6667788999999988 654332 22223334444


Q ss_pred             EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeec
Q 012799          200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG  279 (456)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  279 (456)
                      ...+     ++. +..++  +.+..+| .+++...........+.++...+++.+++++.++.+..+|. +++.+..+..
T Consensus       183 ~~d~-----~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~  252 (330)
T 3hxj_A          183 SIGK-----DGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKT  252 (330)
T ss_dssp             EECT-----TCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             EEcC-----CCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeC
Confidence            4433     555 44455  8899999 77777777665566788888898888888998889999984 5565555543


Q ss_pred             CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc
Q 012799          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (456)
Q Consensus       280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  359 (456)
                      ....+..+...+                                     +..++.++.+|.+..+|. ++. ........
T Consensus       253 ~~~~~~~~~~~~-------------------------------------~g~l~v~t~~ggl~~~d~-~g~-~~~~~~~~  293 (330)
T 3hxj_A          253 GKRIESSPVIGN-------------------------------------TDTIYFGSYDGHLYAINP-DGT-EKWNFETG  293 (330)
T ss_dssp             SSCCCSCCEECT-------------------------------------TSCEEEECTTCEEEEECT-TSC-EEEEEECS
T ss_pred             CCCccccceEcC-------------------------------------CCeEEEecCCCCEEEECC-CCc-EEEEEEcC
Confidence            332222222221                                     334888888999999994 333 23333333


Q ss_pred             cccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (456)
Q Consensus       360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  391 (456)
                      ...+.++...++|+ |..|+.+|.+++...+.
T Consensus       294 ~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          294 SWIIATPVIDENGT-IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             SCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred             CccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence            45577778878886 55688899999887653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.18  E-value=2.3e-08  Score=89.95  Aligned_cols=220  Identities=15%  Similarity=0.140  Sum_probs=138.7

Q ss_pred             CCCCeEEEEE-CCCcEEEEeCCCC----cceeEEe-------cCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEeC
Q 012799          118 PDGRQLASGS-GDTTVRLWDLNTQ----TPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKA------GELQCWDP  179 (456)
Q Consensus       118 ~~~~~l~~~~-~d~~v~vwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd~  179 (456)
                      +++++|+..+ .+++|.++|+.+.    +...++.       ........+...|+| .++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            7788776654 6789999999755    3444442       011245667888999 66665554      78999999


Q ss_pred             CCCCCccccccCcc--cceEEEEecccccCCCCCEEEEEe-------------------CCCcEEEEECCCCeEEEEecC
Q 012799          180 QTGKPSGNPLSGHK--KWITGISWEPVHLNAPCRRFVSAS-------------------KDGDARIWDVSLRKCVICLSG  238 (456)
Q Consensus       180 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~  238 (456)
                      ++++.+.+...+..  ..-..+.|+|     +++.+++..                   .+..|.+||+.+++.+.++..
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p-----~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNL-----PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEET-----TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             CCCeEEEEEccCCCCccccceEEECC-----CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            99887664432211  2234577888     888888875                   368999999999988877754


Q ss_pred             c--CccEEEEEe--CCCC-eEEEEe------CCCcEEEEECCCCeE--EEEeecC------------------CcceEEE
Q 012799          239 H--TLAVTCVKW--GGDG-VIYTGS------QDCTIKVWETTQGKL--IRELKGH------------------GHWVNSL  287 (456)
Q Consensus       239 ~--~~~v~~~~~--~~~~-~l~~~~------~dg~i~iwd~~~~~~--~~~~~~~------------------~~~i~~~  287 (456)
                      .  ......+.|  +|++ .+++++      .+++|.+|....++.  .+.+...                  ......+
T Consensus       247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence            2  133445555  9998 554444      667888876655432  1111000                  1223445


Q ss_pred             EecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe-CCCcEEEEecCCCCCCcc--cc-cc-----
Q 012799          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKT--RM-TG-----  358 (456)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~~-~~-----  358 (456)
                      .++++                                    +++|+++. ..+.|.+||+........  .. .+     
T Consensus       327 ~lS~D------------------------------------GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~  370 (462)
T 2ece_A          327 DISLD------------------------------------DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHR  370 (462)
T ss_dssp             EECTT------------------------------------SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTC
T ss_pred             EECCC------------------------------------CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecc
Confidence            55555                                    55565554 478999999764332211  11 11     


Q ss_pred             --c------cccEeEEEECCCCCEEEEEE
Q 012799          359 --H------QQLVNHVYFSPDGQWVASAS  379 (456)
Q Consensus       359 --~------~~~v~~~~~sp~~~~l~s~~  379 (456)
                        |      ......++++|||++|+++.
T Consensus       371 ~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          371 ADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             BCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence              0      01357899999999988887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.18  E-value=5.5e-10  Score=100.25  Aligned_cols=182  Identities=13%  Similarity=0.063  Sum_probs=114.5

Q ss_pred             CCEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCCcc-----ccccCcccceEEEEecccccCCCCCEEEEEeC-----
Q 012799          151 NWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKPSG-----NPLSGHKKWITGISWEPVHLNAPCRRFVSASK-----  218 (456)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-----  218 (456)
                      ..+..++++++|+.+++...  ++.++||.+.+++...     .....+...+..+++.+     +++++++-..     
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~-----~g~L~v~D~g~~~~~   91 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDG-----NGIVWMLDNGNQSKS   91 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECS-----SSEEEEEECHHHHTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcC-----CCcEEEEcCCCCcCC
Confidence            67899999999998888642  3435555554443221     01123456789999988     7665555433     


Q ss_pred             CCcEEEEECCCCeEEEEecCc------CccEEEEEeCCC-CeEE-EEe---CCCcEEEEECCCCeEEEEeecCCcceE-E
Q 012799          219 DGDARIWDVSLRKCVICLSGH------TLAVTCVKWGGD-GVIY-TGS---QDCTIKVWETTQGKLIRELKGHGHWVN-S  286 (456)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~-~~l~-~~~---~dg~i~iwd~~~~~~~~~~~~~~~~i~-~  286 (456)
                      ++.|.+||+.+++.+..+...      ...+..++++++ +.++ +..   .++.|.+||+.+++..+.+..|..... .
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~  171 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED  171 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence            578999999999876665421      234688999975 4544 444   578999999998887666644321100 0


Q ss_pred             EEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEE
Q 012799          287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV  366 (456)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  366 (456)
                      ..+..+                                    +..+.+...++.+..|.               ..+..+
T Consensus       172 ~~~~~~------------------------------------g~~~~~~~~~g~~~~~~---------------~~~~gi  200 (343)
T 2qe8_A          172 IDLVID------------------------------------GVPVQIGQPDGTVIRPH---------------LGVNGI  200 (343)
T ss_dssp             CCCEET------------------------------------TEECBEECTTSCEECCC---------------CCEEEE
T ss_pred             cceeEC------------------------------------CEEEEeccCCCceecee---------------ccccee
Confidence            111111                                    22344555666665443               136789


Q ss_pred             EECCCCCEEEEEECCC-cEEEEe
Q 012799          367 YFSPDGQWVASASFDK-SIKLWN  388 (456)
Q Consensus       367 ~~sp~~~~l~s~~~dg-~i~iwd  388 (456)
                      +|+|+|+.|+.+..++ .+..++
T Consensus       201 a~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          201 VLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             EECTTSCEEEEEESSCSEEEEEE
T ss_pred             EeccCCCEEEEEeCCCCeEEEEE
Confidence            9999999988887776 444443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.11  E-value=7.2e-09  Score=101.20  Aligned_cols=155  Identities=15%  Similarity=0.132  Sum_probs=99.9

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCCC----------E-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----------V-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      +..++.++.++.|..+|..+++.+.++......          + ..+++  .+..++.++.|+.|..+|.++|+.+...
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            456777778899999999999998877533211          0 11222  3567888889999999999999876533


Q ss_pred             ccCcccceEEEEecccccCCCCCEEEEEeC------CCcEEEEECCCCeEEEEecCcC---c------------------
Q 012799          189 LSGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHT---L------------------  241 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~---~------------------  241 (456)
                      ..........+...|.-   .+..++++..      +|.|+.+|..+++.+..+....   .                  
T Consensus       144 ~~~~~~~~~~~~~~P~v---~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  220 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRV---VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD  220 (668)
T ss_dssp             ECSCTTSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred             ccCCCCCcceecCCCEE---ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence            22111100111111211   1235555543      5899999999999988774210   0                  


Q ss_pred             ----------cEEEEEeCCCC-eEEEEeCCC-------------------cEEEEECCCCeEEEEeec
Q 012799          242 ----------AVTCVKWGGDG-VIYTGSQDC-------------------TIKVWETTQGKLIRELKG  279 (456)
Q Consensus       242 ----------~v~~~~~~~~~-~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~  279 (456)
                                ....++++++. .++.++.++                   .|..+|.++|+.+..++.
T Consensus       221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~  288 (668)
T 1kv9_A          221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV  288 (668)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred             ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec
Confidence                      01235777755 777777765                   399999999999888764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.08  E-value=1.4e-07  Score=84.86  Aligned_cols=198  Identities=12%  Similarity=0.100  Sum_probs=120.9

Q ss_pred             CCCCEEEE-EeCCCeEEEEeCCCCCC----cccc----cc-C-cccceEEEEecccccCCCCCEEEEEeCC------CcE
Q 012799          160 ADGKHLVS-GSKAGELQCWDPQTGKP----SGNP----LS-G-HKKWITGISWEPVHLNAPCRRFVSASKD------GDA  222 (456)
Q Consensus       160 ~~~~~l~s-~~~dg~i~vwd~~~~~~----~~~~----~~-~-~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g~i  222 (456)
                      +++++|+. +..++.|.++|+.+...    ...+    +. . ....-..+...|     +| .++++..+      |.|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-----dG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-----DA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-----SC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-----Ce-EEEEcCCCcCCCCCCeE
Confidence            77777766 45578899999975421    1111    00 0 011233444555     77 66666555      789


Q ss_pred             EEEECCCCeEEEEecCcCc---cEEEEEeCCCC-eEEEEe-------------------CCCcEEEEECCCCeEEEEeec
Q 012799          223 RIWDVSLRKCVICLSGHTL---AVTCVKWGGDG-VIYTGS-------------------QDCTIKVWETTQGKLIRELKG  279 (456)
Q Consensus       223 ~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~-~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~  279 (456)
                      .++|..+.+.+..+.....   .-..+-|+|++ .+++..                   .+.+|.+||+.+++.+.++..
T Consensus       167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            9999999999988863322   23357789988 566553                   368999999999988888865


Q ss_pred             C--CcceEEEEe--cCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe------CCCcEEEEecCCC
Q 012799          280 H--GHWVNSLAL--STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS------DDFTMFLWEPAVS  349 (456)
Q Consensus       280 ~--~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~  349 (456)
                      .  ......+.+  +|++                                    .++++++      .+++|.+|....+
T Consensus       247 g~~g~~P~~i~f~~~Pdg------------------------------------~~aYV~~e~~~~~Lss~V~v~~~d~g  290 (462)
T 2ece_A          247 GEENRMALELRPLHDPTK------------------------------------LMGFINMVVSLKDLSSSIWLWFYEDG  290 (462)
T ss_dssp             CTTEEEEEEEEECSSTTC------------------------------------CEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred             CCCCCccceeEeeECCCC------------------------------------CEEEEEEeeeccCCCceEEEEEecCC
Confidence            3  123344544  7763                                    3344444      4567765543221


Q ss_pred             CC------------Ccccc-------ccccccEeEEEECCCCCEEEEEEC-CCcEEEEeCCC---CeEEEEEe
Q 012799          350 KQ------------PKTRM-------TGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTT---GKFVAVFR  399 (456)
Q Consensus       350 ~~------------~~~~~-------~~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~  399 (456)
                      ..            ....+       .+-......+.+||||++|.++.. .+.|.+||+.+   .+++..+.
T Consensus       291 ~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~  363 (462)
T 2ece_A          291 KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVK  363 (462)
T ss_dssp             EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred             ceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEE
Confidence            00            00000       000245788999999999887664 67999999863   34444443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.07  E-value=3.2e-07  Score=78.94  Aligned_cols=242  Identities=12%  Similarity=0.020  Sum_probs=142.5

Q ss_pred             CeEEEEECCCcEEEEeCCCCcce-----eEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCccccccCccc
Q 012799          121 RQLASGSGDTTVRLWDLNTQTPM-----FKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGKPSGNPLSGHKK  194 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~  194 (456)
                      ++|+.+.. +.|+.++++.....     ..+......+..++|++++..|+.+ ..++.|..++...+.... .......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-~~~~~~~   79 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-IIRQDLG   79 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-EECTTCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-EEECCCC
Confidence            44555543 47888888754321     1122223457899999976655554 457899999987654322 2222224


Q ss_pred             ceEEEEecccccCCCCCEEEE-EeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC-CeEEEEeC---CCcEEEEECC
Q 012799          195 WITGISWEPVHLNAPCRRFVS-ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQ---DCTIKVWETT  269 (456)
Q Consensus       195 ~v~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~---dg~i~iwd~~  269 (456)
                      ....+++.+     ++..++. -...+.|.++++..................++++|+ +.++.+..   .+.|..+++.
T Consensus        80 ~p~~ia~d~-----~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           80 SPEGIALDH-----LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             CEEEEEEET-----TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             CccEEEEEe-----cCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence            567888887     5455544 455678999998654322222222245789999995 56665554   3688888876


Q ss_pred             CCeEEEEe-ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCC
Q 012799          270 QGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV  348 (456)
Q Consensus       270 ~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  348 (456)
                      ... ...+ .........++++++.                                   +..+++....+.|.++|+..
T Consensus       155 g~~-~~~~~~~~~~~P~gia~d~~~-----------------------------------~~lyv~d~~~~~I~~~~~~g  198 (267)
T 1npe_A          155 GTN-RRILAQDNLGLPNGLTFDAFS-----------------------------------SQLCWVDAGTHRAECLNPAQ  198 (267)
T ss_dssp             SCC-CEEEECTTCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTE
T ss_pred             CCC-cEEEEECCCCCCcEEEEcCCC-----------------------------------CEEEEEECCCCEEEEEecCC
Confidence            432 2222 2223346778887752                                   22345556678899999653


Q ss_pred             CCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc-cEEEE
Q 012799          349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-PVYQI  408 (456)
Q Consensus       349 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i  408 (456)
                      .. ....... ......++.. ++.++++....+.|..+|..+++.+..+..... ....+
T Consensus       199 ~~-~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi  256 (267)
T 1npe_A          199 PG-RRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGI  256 (267)
T ss_dssp             EE-EEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCE
T ss_pred             Cc-eEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccccccccee
Confidence            22 1111221 2234566664 344444444568999999999998888764321 24455

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.05  E-value=8.7e-09  Score=95.94  Aligned_cols=223  Identities=14%  Similarity=0.045  Sum_probs=138.6

Q ss_pred             CCCEEEEEeC-CCeEEEEeCCCCCCccccccCcccceEEEEe-c-ccccCCCCCEEEEEe------------------CC
Q 012799          161 DGKHLVSGSK-AGELQCWDPQTGKPSGNPLSGHKKWITGISW-E-PVHLNAPCRRFVSAS------------------KD  219 (456)
Q Consensus       161 ~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~~~~l~~~~------------------~d  219 (456)
                      ||++++.... ++.|.+.|+.+.+....+..........+++ . |     ++.++++++                  .+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-----~~~~v~~~~~~~~p~~~dg~~l~~~~~~~  174 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-----RSNYVFCNGEDETPLVNDGTNMEDVANYV  174 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-----BCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-----CCcEEEEecccccccCCCCcccccccccC
Confidence            7888887766 4579999999988654222222344677776 3 6     788888885                  24


Q ss_pred             CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCC-------------------------------------
Q 012799          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC-------------------------------------  261 (456)
Q Consensus       220 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg-------------------------------------  261 (456)
                      +.+.++|..+.+...++.-.. ....++++|+| ++++.+.+.                                     
T Consensus       175 ~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          175 NVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             ceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            579999999998888775322 34567789988 666666543                                     


Q ss_pred             -cEEEEECCC--CeE-EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE-EEEEe
Q 012799          262 -TIKVWETTQ--GKL-IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGS  336 (456)
Q Consensus       262 -~i~iwd~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~  336 (456)
                       .|.+.|.++  ++. +..+.. .....++.++|+                                    +.+ ++++.
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPD------------------------------------Gk~v~V~~~  296 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPD------------------------------------KKHLCVAGK  296 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTT------------------------------------SSEEEEECT
T ss_pred             CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCC------------------------------------CCEEEEeCC
Confidence             244444444  222 222221 112334455555                                    444 44555


Q ss_pred             CCCcEEEEecCCCCC-----------CccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC----------CeEE
Q 012799          337 DDFTMFLWEPAVSKQ-----------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----------GKFV  395 (456)
Q Consensus       337 ~dg~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~----------~~~~  395 (456)
                      .+.+|.++|+.+...           ..... .-......++|+|+|...++.-.|+.|.+||+.+          .+.+
T Consensus       297 ~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi  375 (595)
T 1fwx_A          297 LSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIK  375 (595)
T ss_dssp             TSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEE
T ss_pred             CCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeE
Confidence            788999999774310           11111 1224578899999995455667899999999877          5566


Q ss_pred             EEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799          396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (456)
Q Consensus       396 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~  449 (456)
                      ..+..|-.+-... .                  .   .....+|||++|+++..
T Consensus       376 ~kidV~yqpGh~~-~------------------~---~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          376 DKLDVHYQPGHLK-T------------------V---MGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EEEECSSCEEEEE-E------------------T---TTTSTTCCSSEEEEEES
T ss_pred             EEeecccccccce-e------------------c---cceEeCCCCCEEEEcCC
Confidence            6776654432111 0                  0   01155899999998753

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.02  E-value=2.7e-06  Score=85.42  Aligned_cols=238  Identities=14%  Similarity=0.134  Sum_probs=154.7

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEec-------CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-------HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  180 (456)
                      ...|.++...++|. |..|+.++-|..|+..++... .+..       ....|.++...++|+ |..|+.++-|..|+..
T Consensus       309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~  385 (795)
T 4a2l_A          309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPI  385 (795)
T ss_dssp             SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTT
T ss_pred             CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCC
Confidence            46799999999987 555677777999987654322 2211       245699999888776 5567777779999987


Q ss_pred             CCCCcccccc-------CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec----CcCccEEEEEeC
Q 012799          181 TGKPSGNPLS-------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWG  249 (456)
Q Consensus       181 ~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~  249 (456)
                      ++........       -....|.++...+     ++..+..|+.++-+..||..+++......    .....|.++...
T Consensus       386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-----~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d  460 (795)
T 4a2l_A          386 TQRFTSYTLQEDESARGIGSNNIKAVYVDE-----KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPD  460 (795)
T ss_dssp             TCCEEEECCC------CCSCSCEEEEEEET-----TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEEC
T ss_pred             CCcEEEEecCCCCcccCCCCccEEEEEEcC-----CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEEC
Confidence            7653321111       1235688887765     66647778887889999998876544322    134579999999


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCeEEEEeec------CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799          250 GDGVIYTGSQDCTIKVWETTQGKLIRELKG------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (456)
Q Consensus       250 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (456)
                      ++|.|..|+.+ -+..||..+++.......      ....|.++...+++                              
T Consensus       461 ~~g~lwigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g------------------------------  509 (795)
T 4a2l_A          461 GEGNLWLGTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK------------------------------  509 (795)
T ss_dssp             SSSCEEEEESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC------------------------------
T ss_pred             CCCCEEEEecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC------------------------------
Confidence            88877777774 588999887755432211      12456666655542                              


Q ss_pred             ccCCCCCEEEEEeCCCcEEEEecCCCCCCccc-----cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-----MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       324 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  395 (456)
                             .+..|+. +-+..||...... ...     .......|.++...++|++.++ +.. .+..||..+++..
T Consensus       510 -------~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~d~~~~~~~  575 (795)
T 4a2l_A          510 -------RLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVG-TRE-GFYCFNEKDKQIK  575 (795)
T ss_dssp             -------CEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEE
T ss_pred             -------CEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEE-eCC-CceeECCCCCcEE
Confidence                   2555665 5688888654322 100     0123457999999999986554 334 5888998776543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.02  E-value=8.2e-07  Score=89.13  Aligned_cols=237  Identities=11%  Similarity=0.103  Sum_probs=149.6

Q ss_pred             EEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecC-CCC-EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH-KNW-VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~-v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      |.++...++|.+.+. +. +.+..||..+++........ ... |.++...+++.+ ..++.++-+..|+..+++.....
T Consensus       133 i~~i~~d~~g~lwi~-t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-wigt~~~Gl~~~~~~~~~~~~~~  209 (795)
T 4a2l_A          133 VNGIEEISPEQLLIS-TP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQI-YIGTSTDGLYTYSITQKTFEKVI  209 (795)
T ss_dssp             CCEEEEEETTEEEEE-ET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEE-EEEESSSCEEEEETTTCCEEECC
T ss_pred             EEEEEECCCCCEEEE-EC-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCE-EEEECCCCEEEEeCCCCeEEEec
Confidence            888988888876554 44 45889997665422111111 123 888888777754 44666555888998776543211


Q ss_pred             ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-------cCccEEEEEeCCCCeEEEEeCCC
Q 012799          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-------HTLAVTCVKWGGDGVIYTGSQDC  261 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~l~~~~~dg  261 (456)
                      .......|.++...+     ++ .+..|+.++.+..||..+++.......       ....|.++...++|.+..|+.+ 
T Consensus       210 ~~~~~~~i~~i~~d~-----~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-  282 (795)
T 4a2l_A          210 PILGTKQIQAILQQS-----PT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-  282 (795)
T ss_dssp             ----CCCEEEEEEEE-----TT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-
T ss_pred             CCCCCCeeEEEEEcC-----CC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-
Confidence            112345677777655     44 455666555599999887765443321       1356999999999988888876 


Q ss_pred             cEEEEECCCCeEEEEeec-------CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          262 TIKVWETTQGKLIRELKG-------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       262 ~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      -|.+||..+++.......       ....|.++...+++                                     .+..
T Consensus       283 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-------------------------------------~lWi  325 (795)
T 4a2l_A          283 DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG-------------------------------------GMWL  325 (795)
T ss_dssp             CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-------------------------------------CEEE
T ss_pred             hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-------------------------------------CEEE
Confidence            589999887765433211       22456777666542                                     3778


Q ss_pred             EeCCCcEEEEecCCCCCCcccc-----ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799          335 GSDDFTMFLWEPAVSKQPKTRM-----TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  395 (456)
                      |+.++-|..|+.....-.....     .-....|.++...++|++ ..|+.++-|..|+..+++..
T Consensus       326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~  390 (795)
T 4a2l_A          326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFT  390 (795)
T ss_dssp             EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEE
T ss_pred             EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEE
Confidence            8888889999854332111100     112356999999998874 45777777999998876543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.00  E-value=2.9e-07  Score=77.72  Aligned_cols=194  Identities=12%  Similarity=0.003  Sum_probs=135.1

Q ss_pred             cEEEEEECCCCCeEEEEEC--CCcEEEEeCCCCcceeEEecCC-CCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCc
Q 012799          110 AVLSVAFSPDGRQLASGSG--DTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGKPS  185 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~--d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~  185 (456)
                      ....++|++++.++++.+.  ++.|+++|..+++.+..+.-.. .....+++.  ++.|+.+ -.++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            3679999998765555443  5799999999999888865222 223345554  4455544 45789999999988876


Q ss_pred             cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC-----ccEEEEEeCCCCeEEEEe-C
Q 012799          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-----LAVTCVKWGGDGVIYTGS-Q  259 (456)
Q Consensus       186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~-~  259 (456)
                      .....+ ...-..++  +     ++..++++..++.|.++|..+.+.+..+.-..     ..+..+.|. ++.+++.. .
T Consensus       100 ~~i~~g-~~~g~glt--~-----Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~  170 (266)
T 2iwa_A          100 KNFTHQ-MKDGWGLA--T-----DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ  170 (266)
T ss_dssp             EEEECC-SSSCCEEE--E-----CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             EEEECC-CCCeEEEE--E-----CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence            643333 12222333  3     66777777778999999999988877765321     236677887 67665555 5


Q ss_pred             CCcEEEEECCCCeEEEEeecCC-------------cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799          260 DCTIKVWETTQGKLIRELKGHG-------------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (456)
Q Consensus       260 dg~i~iwd~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (456)
                      ++.|.+.|..+++.+..+....             ...+.++++|+.                                 
T Consensus       171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~---------------------------------  217 (266)
T 2iwa_A          171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN---------------------------------  217 (266)
T ss_dssp             SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT---------------------------------
T ss_pred             CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC---------------------------------
Confidence            7899999999999998886421             245789998873                                 


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCC
Q 012799          327 NAPERLVSGSDDFTMFLWEPAVS  349 (456)
Q Consensus       327 ~~~~~l~~~~~dg~i~iwd~~~~  349 (456)
                        ...++++...+.++..++...
T Consensus       218 --~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          218 --KRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             --TEEEEEETTCSEEEEEEEEEC
T ss_pred             --CEEEEECCCCCeEEEEEEecc
Confidence              345777878899999887543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.98  E-value=3.7e-08  Score=96.25  Aligned_cols=269  Identities=15%  Similarity=0.169  Sum_probs=148.5

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCC-CEEEEEEcC--CCCEEEEEeC------CCeEEEEeCCCCCCcccccc
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN-WVLCIAWSA--DGKHLVSGSK------AGELQCWDPQTGKPSGNPLS  190 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~  190 (456)
                      +..++.++.|+.|..+|..+++.+........ ....+.-+|  .+..++++..      +|.|..+|.++|+.+.....
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            45678888899999999999998887764210 000011111  1334555433      58999999999987543211


Q ss_pred             C--cc----------------------------cceEEEEecccccCCCCCEEEEEeCCC-------------------c
Q 012799          191 G--HK----------------------------KWITGISWEPVHLNAPCRRFVSASKDG-------------------D  221 (456)
Q Consensus       191 ~--~~----------------------------~~v~~~~~~~~~~~~~~~~l~~~~~dg-------------------~  221 (456)
                      .  ..                            .....+++.|     ....++.++.++                   .
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-----~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~  271 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-----ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS  271 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-----TTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-----CCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence            0  00                            0011234444     567888887665                   3


Q ss_pred             EEEEECCCCeEEEEecC--cC-------ccEEEEEeCCCC----eEEEEeCCCcEEEEECCCCeEEEEeecCCc-ceEE-
Q 012799          222 ARIWDVSLRKCVICLSG--HT-------LAVTCVKWGGDG----VIYTGSQDCTIKVWETTQGKLIRELKGHGH-WVNS-  286 (456)
Q Consensus       222 i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~-  286 (456)
                      |..+|..+++.+..+..  |.       .+.....+..+|    .++.++.+|.++++|..+|+.+........ .... 
T Consensus       272 v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~  351 (668)
T 1kv9_A          272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKV  351 (668)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEE
T ss_pred             EEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccc
Confidence            99999999999887753  21       222222222244    488899999999999999998865543221 0011 


Q ss_pred             ----------------------------------EEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh----ccCC-
Q 012799          287 ----------------------------------LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK----IKGN-  327 (456)
Q Consensus       287 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-  327 (456)
                                                        ++++|+..+...........+....       ..+..    ..+. 
T Consensus       352 d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~-------~~~~~~~~~~~g~~  424 (668)
T 1kv9_A          352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEG-------KDFVTRKAFNTAAG  424 (668)
T ss_dssp             CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCG-------GGCCCCSSCCCSSC
T ss_pred             ccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeec-------cccccccccccCcc
Confidence                                              1222211110000000000000000       00000    0000 


Q ss_pred             -CCCEEE-EEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccc
Q 012799          328 -APERLV-SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV  402 (456)
Q Consensus       328 -~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  402 (456)
                       .....+ ....+|.|..||+.+++.......+  .+.....+...+.+++.++.||.++.||.++|+.+..++...
T Consensus       425 ~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~  499 (668)
T 1kv9_A          425 FADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS  499 (668)
T ss_dssp             GGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ccccCCCCCCCccceEEEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence             000011 2234588999998776544332221  222223344467889999999999999999999999887543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.95  E-value=1.1e-06  Score=75.63  Aligned_cols=221  Identities=9%  Similarity=-0.015  Sum_probs=131.3

Q ss_pred             ccEEEEEECCCCCeEEEE-ECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCcc
Q 012799          109 EAVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~  186 (456)
                      ..+.+++|++++..|..+ ..++.|..++...................+++++++..|+.+ ...+.|.+++++......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            356789999976655544 457899999987655443333333578999999976555544 456789999987543211


Q ss_pred             ccccCcccceEEEEecccccCCCCCEEEEEeC---CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE-eCCC
Q 012799          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASK---DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG-SQDC  261 (456)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg  261 (456)
                       ...........++++|     ++..++.+..   .+.|..+++..................+++++++ .|+.+ ...+
T Consensus       116 -~~~~~~~~P~~i~vd~-----~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~  189 (267)
T 1npe_A          116 -LFDTGLVNPRGIVTDP-----VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH  189 (267)
T ss_dssp             -EECSSCSSEEEEEEET-----TTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             -EEECCCCCccEEEEee-----CCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCC
Confidence             1222224567888887     6566665554   3688888876433222222233457889999975 55544 4567


Q ss_pred             cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcE
Q 012799          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (456)
Q Consensus       262 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  341 (456)
                      .|..+|+........+... .....++...                                     +..+++....+.|
T Consensus       190 ~I~~~~~~g~~~~~~~~~~-~~P~gi~~d~-------------------------------------~~lyva~~~~~~v  231 (267)
T 1npe_A          190 RAECLNPAQPGRRKVLEGL-QYPFAVTSYG-------------------------------------KNLYYTDWKTNSV  231 (267)
T ss_dssp             EEEEEETTEEEEEEEEECC-CSEEEEEEET-------------------------------------TEEEEEETTTTEE
T ss_pred             EEEEEecCCCceEEEecCC-CCceEEEEeC-------------------------------------CEEEEEECCCCeE
Confidence            8999998754433333221 1223343321                                     2334555566889


Q ss_pred             EEEecCCCCCCccccccccccEeEEEECCCCC
Q 012799          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ  373 (456)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~  373 (456)
                      ..+|..+++.......+.......+++.|++.
T Consensus       232 ~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          232 IAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEEeCCCCCceEEEccccccccceeeecCccC
Confidence            99996654432222222222356677777653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.94  E-value=1.3e-07  Score=90.38  Aligned_cols=154  Identities=14%  Similarity=0.124  Sum_probs=94.9

Q ss_pred             CCeEEEEEC-CCcEEEEeC-CCCcceeEEecCCCC----------E-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799          120 GRQLASGSG-DTTVRLWDL-NTQTPMFKCTGHKNW----------V-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       120 ~~~l~~~~~-d~~v~vwd~-~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  186 (456)
                      +..++.++. ++.|.-+|. .+++.+.+.......          + ..++.  .+..++.++.|+.+..+|.++|+.+.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            445666666 889999999 899988776532210          0 11222  35678888899999999999998764


Q ss_pred             cccc-CcccceEEEEecccccCCCCCEEEEEeC------CCcEEEEECCCCeEEEEecCcCcc-----------------
Q 012799          187 NPLS-GHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLA-----------------  242 (456)
Q Consensus       187 ~~~~-~~~~~v~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~-----------------  242 (456)
                      .... .+... ..+.-.|..   .+..+++++.      ++.|..+|..+++.+..+......                 
T Consensus       140 ~~~~~~~~~~-~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G  215 (571)
T 2ad6_A          140 EVEVCDPKVG-STLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG  215 (571)
T ss_dssp             EEECCCGGGT-CBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             EecCCCCCcc-ceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence            3221 11100 011111211   1235555554      799999999999988776432110                 


Q ss_pred             ---------------------EEEEEeCCCC-eEEEEeCC----------------CcEEEEECCCCeEEEEeec
Q 012799          243 ---------------------VTCVKWGGDG-VIYTGSQD----------------CTIKVWETTQGKLIRELKG  279 (456)
Q Consensus       243 ---------------------v~~~~~~~~~-~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~  279 (456)
                                           ...++++++. .++.+..+                +.|..+|.++|+.+..++.
T Consensus       216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~  290 (571)
T 2ad6_A          216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQK  290 (571)
T ss_dssp             CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred             ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecC
Confidence                                 0124555543 66665532                3599999999998887764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.93  E-value=2.3e-07  Score=88.70  Aligned_cols=158  Identities=13%  Similarity=0.095  Sum_probs=98.0

Q ss_pred             CCeEEEEEC-CCcEEEEeC-CCCcceeEEecCCCC-----------EEEEEEcCCCCE----EEEEeCCCeEEEEeCCCC
Q 012799          120 GRQLASGSG-DTTVRLWDL-NTQTPMFKCTGHKNW-----------VLCIAWSADGKH----LVSGSKAGELQCWDPQTG  182 (456)
Q Consensus       120 ~~~l~~~~~-d~~v~vwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~s~~~dg~i~vwd~~~~  182 (456)
                      +..++.++. ++.|.-+|. .+++.+.++......           ...+++.|.+..    |+.++.|+.+..+|.++|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            445666666 889999999 899988776532210           123455444444    888889999999999999


Q ss_pred             CCccccccCcccceEEEEecccccCCCCCEEEEEe------CCCcEEEEECCCCeEEEEecCcCcc--------------
Q 012799          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLSGHTLA--------------  242 (456)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~--------------  242 (456)
                      +.+..........-..+.-.|.-   .+..+++++      .+|.|+.+|.++++.+..+......              
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v---~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~  218 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYV---VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEE---ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             CEEEeecCCCCCccceeecCCEE---ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence            87643221110000011111111   123555555      3799999999999988776432111              


Q ss_pred             -----------------------E-EEEEeCCCC-eEEEEeCC----------------CcEEEEECCCCeEEEEeecC
Q 012799          243 -----------------------V-TCVKWGGDG-VIYTGSQD----------------CTIKVWETTQGKLIRELKGH  280 (456)
Q Consensus       243 -----------------------v-~~~~~~~~~-~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~  280 (456)
                                             + ..+++.++. .++.+..+                +.|..+|.++|+.+..++..
T Consensus       219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~  297 (599)
T 1w6s_A          219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT  297 (599)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred             cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence                                   0 123444544 67776655                37999999999998877653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.92  E-value=2.2e-07  Score=90.96  Aligned_cols=117  Identities=17%  Similarity=0.185  Sum_probs=74.3

Q ss_pred             EEEECC-CCCeEEEEECCC-----------cEEEEeCCCCcce--eEEe-cCCCCEEEEEEcCCCCEEEEEeC-CCeEEE
Q 012799          113 SVAFSP-DGRQLASGSGDT-----------TVRLWDLNTQTPM--FKCT-GHKNWVLCIAWSADGKHLVSGSK-AGELQC  176 (456)
Q Consensus       113 ~~~~s~-~~~~l~~~~~d~-----------~v~vwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~s~~~-dg~i~v  176 (456)
                      ++++.+ ++++++.|+.+.           .+.+||..+++-.  ..+. .+.....++++..++++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456677 889999887543           5889998876532  2222 23334445778889999999985 457999


Q ss_pred             EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEe-CC-----CcEEEEECCCCeEEE
Q 012799          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KD-----GDARIWDVSLRKCVI  234 (456)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~  234 (456)
                      ||..+++-...........-.++...+     +++.++.|+ .+     ..+.+||..+.+-..
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~-----dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~  328 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMS-----DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS  328 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECT-----TSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred             ecCcCCceeECCCCCccccccceEEec-----CCeEEEEeCcccCCcccccceEeCCCCCccee
Confidence            998876432211111111112333444     778899988 34     569999998876443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.90  E-value=5.3e-07  Score=76.10  Aligned_cols=161  Identities=11%  Similarity=0.035  Sum_probs=106.5

Q ss_pred             ceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEEecCcC-ccEEEEEeCCCCeEEEEeCCCcEEEEECCCC
Q 012799          195 WITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHT-LAVTCVKWGGDGVIYTGSQDCTIKVWETTQG  271 (456)
Q Consensus       195 ~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~  271 (456)
                      ....+.|++     ++..+++.+.  ++.|.++|+.+++.+..+.-.. .....+++..+...++.-.++.+.++|..+.
T Consensus        22 f~~Gl~~~~-----dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~   96 (266)
T 2iwa_A           22 FTQGLVYAE-----NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTL   96 (266)
T ss_dssp             CEEEEEECS-----TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTT
T ss_pred             CcccEEEeC-----CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCC
Confidence            356888877     6645554443  5799999999999888764222 2234566664324444456789999999999


Q ss_pred             eEEEEeecC-CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC
Q 012799          272 KLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK  350 (456)
Q Consensus       272 ~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  350 (456)
                      +.+.++... ...   ..++++                                    +..++.+..++.|.++|..+.+
T Consensus        97 ~v~~~i~~g~~~g---~glt~D------------------------------------g~~l~vs~gs~~l~viD~~t~~  137 (266)
T 2iwa_A           97 SNIKNFTHQMKDG---WGLATD------------------------------------GKILYGSDGTSILYEIDPHTFK  137 (266)
T ss_dssp             EEEEEEECCSSSC---CEEEEC------------------------------------SSSEEEECSSSEEEEECTTTCC
T ss_pred             cEEEEEECCCCCe---EEEEEC------------------------------------CCEEEEECCCCeEEEEECCCCc
Confidence            999888643 211   223333                                    3345666678899999976654


Q ss_pred             CCcccccc-cc---ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          351 QPKTRMTG-HQ---QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       351 ~~~~~~~~-~~---~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                      .......+ +.   ..++.+.|. +|+..+....++.|.+.|..+++.+..+..
T Consensus       138 v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~  190 (266)
T 2iwa_A          138 LIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILL  190 (266)
T ss_dssp             EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence            33322222 11   136678887 776555555678999999999999988874

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.89  E-value=2.4e-06  Score=75.00  Aligned_cols=227  Identities=12%  Similarity=0.055  Sum_probs=128.9

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCCCcc
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA--GELQCWDPQTGKPSG  186 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~  186 (456)
                      .....++|+++|+++++-..++.|..||.... ....+. ....+..+++.++|+++++....  ..|..++..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            45678999999997777667889999997653 333332 34578999999999966655432  247777777766432


Q ss_pred             ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE-EEEec---------CcCccEEEEEeCCCC-eEE
Q 012799          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLS---------GHTLAVTCVKWGGDG-VIY  255 (456)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~---------~~~~~v~~~~~~~~~-~l~  255 (456)
                      ............++..+     ++..+++-..++.|+.+|...++. +....         ..-.....+  ++++ .++
T Consensus       110 ~~~~~~~~~~~g~~~~~-----~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly  182 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLS-----DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY  182 (306)
T ss_dssp             EEECTTCSCEEEEEESS-----SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred             EEeCCCccccCcccccC-----CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence            11111112223333322     333444444588999999876532 21110         111234455  5565 444


Q ss_pred             -EEeCCCcEEEEECCC-CeE--EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799          256 -TGSQDCTIKVWETTQ-GKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (456)
Q Consensus       256 -~~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (456)
                       +-...+.|..||+.. ++.  ...+.. ......+++.++                                    ++.
T Consensus       183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~d------------------------------------G~l  225 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVE------------------------------------GNL  225 (306)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTT------------------------------------CCE
T ss_pred             EEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCC------------------------------------CCE
Confidence             445567899999864 321  111110 012233444444                                    455


Q ss_pred             EEEEeCCCcEEEEecCCCCCC-ccccccccccEeEEEEC---CCCCEEEEEECCC
Q 012799          332 LVSGSDDFTMFLWEPAVSKQP-KTRMTGHQQLVNHVYFS---PDGQWVASASFDK  382 (456)
Q Consensus       332 l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~s---p~~~~l~s~~~dg  382 (456)
                      +++....+.|.++|.. +... .......-...++++|.   |+++.|+.++..+
T Consensus       226 ~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          226 YGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            6666667889999854 3211 11122223558999998   8887777666544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.87  E-value=2.7e-06  Score=75.39  Aligned_cols=207  Identities=10%  Similarity=0.037  Sum_probs=127.5

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccccc------------------CcccceEEEEecccccCCCCCE
Q 012799          151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS------------------GHKKWITGISWEPVHLNAPCRR  212 (456)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~  212 (456)
                      ....+++|.+++++++++..++.|..|+..++........                  ........+++.+     +...
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-----~~g~   93 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-----QNNQ   93 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-----TTTE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-----CCCc
Confidence            4567789999998888888899999999876543210000                  0123467788775     3446


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEe---cC-cCccEEEEEeCC-CCeEEEEeC------------------CCcEEEEECC
Q 012799          213 FVSASKDGDARIWDVSLRKCVICL---SG-HTLAVTCVKWGG-DGVIYTGSQ------------------DCTIKVWETT  269 (456)
Q Consensus       213 l~~~~~dg~i~iwd~~~~~~~~~~---~~-~~~~v~~~~~~~-~~~l~~~~~------------------dg~i~iwd~~  269 (456)
                      |+++...+.|..+|..++......   .+ .......+++.+ +|.++.+..                  +|.|..||..
T Consensus        94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence            666666666888887755422211   11 123468899999 885555543                  3678889987


Q ss_pred             CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE-EEEeCCCcEEEEecCC
Q 012799          270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAV  348 (456)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~  348 (456)
                      +++...... .......++++++                                    ++.+ ++-...+.|..|++..
T Consensus       174 ~~~~~~~~~-~~~~p~gia~~~d------------------------------------g~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          174 TKETTLLLK-ELHVPGGAEVSAD------------------------------------SSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             TTEEEEEEE-EESCCCEEEECTT------------------------------------SSEEEEEEGGGTEEEEEESSS
T ss_pred             CCEEEEecc-CCccCcceEECCC------------------------------------CCEEEEEeCCCCeEEEEECCC
Confidence            766433222 1223456777776                                    4434 4445678999999764


Q ss_pred             CCC-CccccccccccEeEEEECCCCCEEEEEEC----------CCcEEEEeCCCCeEEEEEecc
Q 012799          349 SKQ-PKTRMTGHQQLVNHVYFSPDGQWVASASF----------DKSIKLWNGTTGKFVAVFRGH  401 (456)
Q Consensus       349 ~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~  401 (456)
                      ... ....+....+ ...++++++|++.++...          .+.|..+|. .++.+..+...
T Consensus       217 ~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~  278 (322)
T 2fp8_A          217 PKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLP  278 (322)
T ss_dssp             TTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECC
T ss_pred             CcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECC
Confidence            221 1111111123 778999999987666544          467888886 57777666543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.87  E-value=6.1e-07  Score=85.82  Aligned_cols=152  Identities=12%  Similarity=0.071  Sum_probs=93.7

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCC----CCEEE-EEEcCCCCEEEEEeC------CCeEEEEeCCCCCCcccc
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHK----NWVLC-IAWSADGKHLVSGSK------AGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~  188 (456)
                      +..++.++.|+.+..+|..+++.+.......    ..+.+ .... ++ .+++++.      ++.|..+|.++|+.+.+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            5567888889999999999999887765221    01111 1111 34 5555554      789999999999865422


Q ss_pred             ccCccc------------------------------------ce-EEEEecccccCCCCCEEEEEeCC------------
Q 012799          189 LSGHKK------------------------------------WI-TGISWEPVHLNAPCRRFVSASKD------------  219 (456)
Q Consensus       189 ~~~~~~------------------------------------~v-~~~~~~~~~~~~~~~~l~~~~~d------------  219 (456)
                      ......                                    .+ ..+++.+     ....++.+..+            
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-----~~g~vy~~~g~~~~~~~~~~~gd  267 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-----KLNLFYYGSGNPAPWNETMRPGD  267 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-----TTTEEEEECCCCSCSCGGGSCSC
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-----CCCeEEEECCCCccccCCccCCC
Confidence            111000                                    00 1123333     34556555432            


Q ss_pred             ----CcEEEEECCCCeEEEEecCc----------CccEEEEEeCCCC----eEEEEeCCCcEEEEECCCCeEEEEeec
Q 012799          220 ----GDARIWDVSLRKCVICLSGH----------TLAVTCVKWGGDG----VIYTGSQDCTIKVWETTQGKLIRELKG  279 (456)
Q Consensus       220 ----g~i~iwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~  279 (456)
                          +.|..+|..+++.+..+...          ..++. +....+|    .++.++.+|.++++|..+|+.+.....
T Consensus       268 ~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             ceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence                35999999999988776432          12221 2222345    366788899999999999998877653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.86  E-value=1.2e-05  Score=80.55  Aligned_cols=240  Identities=14%  Similarity=0.056  Sum_probs=148.0

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe-------cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  181 (456)
                      ..|.++...++|.+.+ |+.+ -+.+||..+++......       .....|.++...++|. |..|+..+-|.++|..+
T Consensus       211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence            5699999998887555 4455 58999987654332111       1245699999887775 55666645688888876


Q ss_pred             CCCccccc-------------cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec---------Cc
Q 012799          182 GKPSGNPL-------------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---------GH  239 (456)
Q Consensus       182 ~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~  239 (456)
                      +.......             .-....|.++...+     +| .+..|+.++-|..++...........         ..
T Consensus       288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-----~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~  361 (781)
T 3v9f_A          288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-----FN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLS  361 (781)
T ss_dssp             C---------CEEECBCSSTTSBSSSCEEEEEECS-----SC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCS
T ss_pred             CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-----CC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCC
Confidence            65321110             11234677877665     44 46677877889999887654332211         12


Q ss_pred             CccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEe---ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799          240 TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL---KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (456)
Q Consensus       240 ~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (456)
                      ...|.++...++|.|..|+.++-|..||..+++.....   ......|.++...++                        
T Consensus       362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~------------------------  417 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSE------------------------  417 (781)
T ss_dssp             SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTT------------------------
T ss_pred             CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCC------------------------
Confidence            35699999999898888887777999998754332111   112344666655443                        


Q ss_pred             HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc-ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  395 (456)
                                   ..|..|+.++-+..+|..+........ ......|.++...++|++.+ |+. +.+..||..+++..
T Consensus       418 -------------g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~  482 (781)
T 3v9f_A          418 -------------GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVI  482 (781)
T ss_dssp             -------------SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCC
T ss_pred             -------------CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEE
Confidence                         236778877788889865432111110 12345799999988887544 455 55899998776554


Q ss_pred             E
Q 012799          396 A  396 (456)
Q Consensus       396 ~  396 (456)
                      .
T Consensus       483 ~  483 (781)
T 3v9f_A          483 H  483 (781)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.86  E-value=4.9e-06  Score=73.02  Aligned_cols=210  Identities=12%  Similarity=0.069  Sum_probs=122.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC--cEEEEECC
Q 012799          151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--DARIWDVS  228 (456)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~  228 (456)
                      .....++|+++++++++-..++.|..||.......   ..........+++.+     +++.+++.....  .|..+|..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~---~~~~~~~p~gia~~~-----dG~l~vad~~~~~~~v~~~d~~  103 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI---HATVEGKVSGLAFTS-----NGDLVATGWNADSIPVVSLVKS  103 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE---EEECSSEEEEEEECT-----TSCEEEEEECTTSCEEEEEECT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEE---EEeCCCCceeEEEcC-----CCcEEEEeccCCcceEEEEcCC
Confidence            56788999999987777667899999998753221   111234577888887     787665554322  47777777


Q ss_pred             CCeEEEEec-CcCccEEEEEeCCCCeEEEEe-CCCcEEEEECCCCeE-EEEeec---------CCcceEEEEecCcceee
Q 012799          229 LRKCVICLS-GHTLAVTCVKWGGDGVIYTGS-QDCTIKVWETTQGKL-IRELKG---------HGHWVNSLALSTEYALR  296 (456)
Q Consensus       229 ~~~~~~~~~-~~~~~v~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~---------~~~~i~~~~~~~~~~~~  296 (456)
                      +++...... ........++..+++.+++.. .++.|..+|..+++. +.....         .....+.+  +++    
T Consensus       104 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d----  177 (306)
T 2p4o_A          104 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF----  177 (306)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE----
T ss_pred             CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC----
Confidence            776543222 112233455555566555444 588999999876532 211110         00011222  222    


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCC-EEEEEeCCCcEEEEecCCCCCC--ccccccccccEeEEEECCCCC
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-RLVSGSDDFTMFLWEPAVSKQP--KTRMTGHQQLVNHVYFSPDGQ  373 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~sp~~~  373 (456)
                                                      +. .+++-...+.|..||+......  ...+. .......++++++|+
T Consensus       178 --------------------------------g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~  224 (306)
T 2p4o_A          178 --------------------------------GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGN  224 (306)
T ss_dssp             --------------------------------TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCC
T ss_pred             --------------------------------CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCC
Confidence                                            33 3455566789999997642211  11111 113456789999999


Q ss_pred             EEEEEECCCcEEEEeCCCCeEEEE--EecccccEEEE
Q 012799          374 WVASASFDKSIKLWNGTTGKFVAV--FRGHVGPVYQI  408 (456)
Q Consensus       374 ~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~i  408 (456)
                      +.++....+.|.++|.. |+....  +........++
T Consensus       225 l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~  260 (306)
T 2p4o_A          225 LYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV  260 (306)
T ss_dssp             EEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred             EEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence            88777778899999964 665332  22222346667

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.85  E-value=2.4e-05  Score=78.36  Aligned_cols=240  Identities=11%  Similarity=0.095  Sum_probs=149.9

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe--------------cCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--------------GHKNWVLCIAWSADGKHLVSGSKAGE  173 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~s~~~dg~  173 (456)
                      ...|.++...++|. |..|+..+-|.+++..++.......              -....|.++...++|. |..|+.++-
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G  334 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG  334 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence            45799999988887 4456664568899987654322111              1345799999988776 666777777


Q ss_pred             EEEEeCCCCCCccccc--------cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCcc
Q 012799          174 LQCWDPQTGKPSGNPL--------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLA  242 (456)
Q Consensus       174 i~vwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~  242 (456)
                      |..++..++.......        .-....|.++...+     ++ .+..|+.++-|..||..++......   ......
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-----~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~  408 (781)
T 3v9f_A          335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-----QG-KLWIGTDGGGINVFENGKRVAIYNKENRELLSNS  408 (781)
T ss_dssp             EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-----TS-CEEEEEBSSCEEEEETTEEEEECC-----CCCSB
T ss_pred             EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-----CC-CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcc
Confidence            8889877654321100        11234578887655     44 4667776777999998755432211   123467


Q ss_pred             EEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799          243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (456)
Q Consensus       243 v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (456)
                      |.++...+++.|.+|+.++-+..+|..+++......  .....|.++...++                            
T Consensus       409 v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~----------------------------  460 (781)
T 3v9f_A          409 VLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKN----------------------------  460 (781)
T ss_dssp             EEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTT----------------------------
T ss_pred             eEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCC----------------------------
Confidence            999999988888888887789999988775433221  12345666666554                            


Q ss_pred             hhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc-c---cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799          321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-T---GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF  394 (456)
Q Consensus       321 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~---~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~  394 (456)
                               ..+..|+. +-+..||..+........ .   .....|.++...++|++.+ |+.++-+..||..+++.
T Consensus       461 ---------g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~  527 (781)
T 3v9f_A          461 ---------KKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLV  527 (781)
T ss_dssp             ---------SEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEE
T ss_pred             ---------CCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeE
Confidence                     23666666 568889865433211111 0   1135799999999988654 44444488899776653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.81  E-value=1.9e-06  Score=71.77  Aligned_cols=170  Identities=15%  Similarity=0.112  Sum_probs=117.8

Q ss_pred             EEEEEECCCCCeEEEEECCC--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCccc
Q 012799          111 VLSVAFSPDGRQLASGSGDT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGN  187 (456)
Q Consensus       111 V~~~~~s~~~~~l~~~~~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~  187 (456)
                      ...+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+.-.. ........++++.|.... .++.+.+||.++.+.+.+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            4788998 677777777665  89999999999988876433 333322233455555544 588999999999887664


Q ss_pred             cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc--C---ccEEEEEeCCCCeEEEEe-CCC
Q 012799          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH--T---LAVTCVKWGGDGVIYTGS-QDC  261 (456)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~~~~~~~~~l~~~~-~dg  261 (456)
                      ...+..  -..+++       ++..|+.+..++.|.++|..+.+.+..+.-.  .   ..++.+.|. +|.+++.. .++
T Consensus       123 i~~~~e--G~glt~-------dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~  192 (262)
T 3nol_A          123 FNYDGE--GWGLTH-------NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTN  192 (262)
T ss_dssp             EECSSC--CCCEEE-------CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred             EECCCC--ceEEec-------CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCC
Confidence            333221  123332       6677777766788999999998888776532  1   334567776 67666655 578


Q ss_pred             cEEEEECCCCeEEEEeecC------------CcceEEEEecCc
Q 012799          262 TIKVWETTQGKLIRELKGH------------GHWVNSLALSTE  292 (456)
Q Consensus       262 ~i~iwd~~~~~~~~~~~~~------------~~~i~~~~~~~~  292 (456)
                      .|.+.|..+++.+..+...            ....+.|+++|+
T Consensus       193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~  235 (262)
T 3nol_A          193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE  235 (262)
T ss_dssp             EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred             eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence            9999999999998888642            124577888886

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.81  E-value=1.4e-06  Score=83.28  Aligned_cols=162  Identities=14%  Similarity=0.145  Sum_probs=97.2

Q ss_pred             EEECCCCCe----EEEEECCCcEEEEeCCCCcceeEEecCC----CCEEE-EEEcCCCCEEEEEe------CCCeEEEEe
Q 012799          114 VAFSPDGRQ----LASGSGDTTVRLWDLNTQTPMFKCTGHK----NWVLC-IAWSADGKHLVSGS------KAGELQCWD  178 (456)
Q Consensus       114 ~~~s~~~~~----l~~~~~d~~v~vwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~s~~------~dg~i~vwd  178 (456)
                      ++++|.+..    ++.++.|+.+..+|..+++.+.......    ..+.+ .... ++ .+++++      .+|.|..+|
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D  188 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYD  188 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEE
Confidence            445444444    7888899999999999999887754321    01111 1111 44 455554      379999999


Q ss_pred             CCCCCCccccccCccc-------------ce-------------------EEEEecccccCCCCCEEEEEeCC-------
Q 012799          179 PQTGKPSGNPLSGHKK-------------WI-------------------TGISWEPVHLNAPCRRFVSASKD-------  219 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~-------------~v-------------------~~~~~~~~~~~~~~~~l~~~~~d-------  219 (456)
                      .++|+.+.+.......             ++                   ..-.|....+......++.+..+       
T Consensus       189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~  268 (599)
T 1w6s_A          189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET  268 (599)
T ss_dssp             TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred             CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence            9999865422211100             00                   00011111111255667766654       


Q ss_pred             ---------CcEEEEECCCCeEEEEecCcC----------ccEEEEEeC-CCC----eEEEEeCCCcEEEEECCCCeEEE
Q 012799          220 ---------GDARIWDVSLRKCVICLSGHT----------LAVTCVKWG-GDG----VIYTGSQDCTIKVWETTQGKLIR  275 (456)
Q Consensus       220 ---------g~i~iwd~~~~~~~~~~~~~~----------~~v~~~~~~-~~~----~l~~~~~dg~i~iwd~~~~~~~~  275 (456)
                               +.|..+|.++++.+..++...          .++. +... .+|    .++.++.+|.++++|.++|+.+.
T Consensus       269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence                     379999999999887765321          1222 2221 344    46668899999999999999887


Q ss_pred             Eee
Q 012799          276 ELK  278 (456)
Q Consensus       276 ~~~  278 (456)
                      ...
T Consensus       348 ~~~  350 (599)
T 1w6s_A          348 ANK  350 (599)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.79  E-value=1e-07  Score=88.90  Aligned_cols=232  Identities=13%  Similarity=0.038  Sum_probs=150.2

Q ss_pred             CCCCeEEEEEC-CCcEEEEeCCCCcceeEEec-CCCCEEEEEE-c-CCCCEEEEEe------------------CCCeEE
Q 012799          118 PDGRQLASGSG-DTTVRLWDLNTQTPMFKCTG-HKNWVLCIAW-S-ADGKHLVSGS------------------KAGELQ  175 (456)
Q Consensus       118 ~~~~~l~~~~~-d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~s~~------------------~dg~i~  175 (456)
                      +||++++.... ++.|.+.|+.+.+....+.- ....+..+++ + |+++++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            38888877664 55799999999987774432 3355888888 5 8999999885                  245799


Q ss_pred             EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC-----------------------------------
Q 012799          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG-----------------------------------  220 (456)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-----------------------------------  220 (456)
                      +.|.++.+...+...+.  ....++.+|     +|+++++.+.+.                                   
T Consensus       179 vID~~t~~v~~qI~Vgg--~pd~~~~sp-----dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG--NLDNCDADY-----EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEETTTTEEEEEEEESS--CCCCEEECS-----SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             EEECCCCeEEEEEEeCC--CccceEECC-----CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence            99999877655333221  234455666     777777766443                                   


Q ss_pred             ---cEEEEECCC--CeE-EEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCe------------EEEEeecC
Q 012799          221 ---DARIWDVSL--RKC-VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGK------------LIRELKGH  280 (456)
Q Consensus       221 ---~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~  280 (456)
                         .|.+.|..+  ++. +..+.. .....++.++|||  .++++..+.+|.++|+.+.+            ....+. -
T Consensus       252 ~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-v  329 (595)
T 1fwx_A          252 ELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-L  329 (595)
T ss_dssp             EETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-C
T ss_pred             EECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-C
Confidence               366777766  433 333322 2345678999999  44445568899999998653            233333 3


Q ss_pred             CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC---------CC
Q 012799          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS---------KQ  351 (456)
Q Consensus       281 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~  351 (456)
                      +.....++|+++                                    +...++...|+.|.+||+...         ..
T Consensus       330 G~gP~h~aF~~d------------------------------------G~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~  373 (595)
T 1fwx_A          330 GLGPLHTAFDGR------------------------------------GNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDP  373 (595)
T ss_dssp             CSCEEEEEECTT------------------------------------SEEEEEETTTTEEEEEEHHHHHHHHHTCSCCC
T ss_pred             CCCcceEEECCC------------------------------------CeEEEEEecCCcEEEEEhhHhhhhhcccccce
Confidence            445677888887                                    333566778999999997651         23


Q ss_pred             Ccccccccccc-----EeEEEECCCCCEEEEEEC---CCc----------EEEEeCCCCeE
Q 012799          352 PKTRMTGHQQL-----VNHVYFSPDGQWVASASF---DKS----------IKLWNGTTGKF  394 (456)
Q Consensus       352 ~~~~~~~~~~~-----v~~~~~sp~~~~l~s~~~---dg~----------i~iwd~~~~~~  394 (456)
                      .+.++..|..+     -..+.++|||++|+++..   |+.          -.++|+..+++
T Consensus       374 vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          374 IKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             EEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             eEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence            33344333322     123356899999998753   432          28899965553

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.79  E-value=1.1e-06  Score=73.17  Aligned_cols=168  Identities=13%  Similarity=0.133  Sum_probs=117.6

Q ss_pred             EEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCE--EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV--LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      ...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -. ...  ..+++.. +++.+..-.++.+.+||.++.+.+.++
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            4678887 4566777778889999999999988877 22 233  3355532 334444556889999999998876643


Q ss_pred             ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC-----ccEEEEEeCCCCeEEEEe-CCCc
Q 012799          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-----LAVTCVKWGGDGVIYTGS-QDCT  262 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~-~dg~  262 (456)
                      ...  ..-..+++       ++..|+.+..++.|.++|..+.+.+..+.-..     ..++.+.|. +|.+++.. .++.
T Consensus       133 ~~~--~eGwGLt~-------Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~  202 (268)
T 3nok_A          133 RYS--GEGWGLCY-------WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD  202 (268)
T ss_dssp             ECS--SCCCCEEE-------ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE
T ss_pred             eCC--CceeEEec-------CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe
Confidence            332  22234443       56777777778999999999998887765322     245667777 66666655 5789


Q ss_pred             EEEEECCCCeEEEEeecC-------------CcceEEEEecCc
Q 012799          263 IKVWETTQGKLIRELKGH-------------GHWVNSLALSTE  292 (456)
Q Consensus       263 i~iwd~~~~~~~~~~~~~-------------~~~i~~~~~~~~  292 (456)
                      |.+.|..+++.+..+...             ....+.|+++|+
T Consensus       203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~  245 (268)
T 3nok_A          203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG  245 (268)
T ss_dssp             EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred             EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence            999999999998887532             134578888886

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.78  E-value=2.4e-06  Score=81.86  Aligned_cols=159  Identities=19%  Similarity=0.199  Sum_probs=96.3

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCC----CEE-EEEEcC---CCC-EEEEEe------CCCeEEEEeCCCCCC
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN----WVL-CIAWSA---DGK-HLVSGS------KAGELQCWDPQTGKP  184 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~----~v~-~~~~~~---~~~-~l~s~~------~dg~i~vwd~~~~~~  184 (456)
                      +..++.++.|+.|..+|..+++.+........    .+. ......   +++ .+++++      .+|.|..+|.++|+.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            45677888999999999999998877653220    111 111111   233 555554      378999999999986


Q ss_pred             ccccccCcccce------------------------------------EEEEecccccCCCCCEEEEEeC----------
Q 012799          185 SGNPLSGHKKWI------------------------------------TGISWEPVHLNAPCRRFVSASK----------  218 (456)
Q Consensus       185 ~~~~~~~~~~~v------------------------------------~~~~~~~~~~~~~~~~l~~~~~----------  218 (456)
                      +...... ...+                                    -...|.+..+++....++.+..          
T Consensus       197 ~W~~~~~-~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          197 IWMRPFV-EGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEEESS-TTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             EeecCCC-ccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            5422110 0000                                    0001111122224556666553          


Q ss_pred             ----------C----CcEEEEECCCCeEEEEecC--cC--------ccEEEEEeC-CCC----eEEEEeCCCcEEEEECC
Q 012799          219 ----------D----GDARIWDVSLRKCVICLSG--HT--------LAVTCVKWG-GDG----VIYTGSQDCTIKVWETT  269 (456)
Q Consensus       219 ----------d----g~i~iwd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~----~l~~~~~dg~i~iwd~~  269 (456)
                                |    +.|..+|..+++.+..++.  |.        .++. +... .+|    .++.++.+|.++++|..
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~  354 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRS  354 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECC
Confidence                      2    5899999999999887743  21        1222 2221 344    57788999999999999


Q ss_pred             CCeEEEEeecC
Q 012799          270 QGKLIRELKGH  280 (456)
Q Consensus       270 ~~~~~~~~~~~  280 (456)
                      +|+.+..+...
T Consensus       355 tG~~lw~~~~~  365 (582)
T 1flg_A          355 NGKLQNAFPFV  365 (582)
T ss_dssp             TCCEEEEEESS
T ss_pred             CCCEecccccc
Confidence            99998877643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.77  E-value=2.6e-06  Score=81.60  Aligned_cols=115  Identities=10%  Similarity=-0.003  Sum_probs=67.6

Q ss_pred             CeEEEEECCCcEEEEeCCCCcceeEEecCCCC---------EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccC
Q 012799          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW---------VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG  191 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  191 (456)
                      ..++.++.++.|.-+|..+++.+.++......         ...++.  .+..++.++.|+.|..+|.++|+.+......
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            34555555445999999999988877643221         011222  3557888889999999999999876432211


Q ss_pred             cccceEEEEecccccC--CCCC-EEEEEe------CCCcEEEEECCCCeEEEEec
Q 012799          192 HKKWITGISWEPVHLN--APCR-RFVSAS------KDGDARIWDVSLRKCVICLS  237 (456)
Q Consensus       192 ~~~~v~~~~~~~~~~~--~~~~-~l~~~~------~dg~i~iwd~~~~~~~~~~~  237 (456)
                      ....-..+.-.|.-..  .+++ .+++++      .+|.|+.+|..+++.+....
T Consensus       147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~  201 (582)
T 1flg_A          147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence            1000000001111000  0222 555554      37899999999999887653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.74  E-value=1.6e-06  Score=72.18  Aligned_cols=159  Identities=15%  Similarity=0.136  Sum_probs=104.0

Q ss_pred             eEEEEecccccCCCCCEEEEEeCCC--cEEEEECCCCeEEEEecCcCcc-EEEEEeCCCCeEEEEeCCCcEEEEECCCCe
Q 012799          196 ITGISWEPVHLNAPCRRFVSASKDG--DARIWDVSLRKCVICLSGHTLA-VTCVKWGGDGVIYTGSQDCTIKVWETTQGK  272 (456)
Q Consensus       196 v~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  272 (456)
                      ...+.|+      ++..+.+.+.+|  .|+.+|+.+++.+..+.-.... -..++...+...++.-.++.+.+||..+.+
T Consensus        45 tqGL~~~------~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           45 TEGFFYR------NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEEEEE------TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred             cceEEEE------CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence            3566664      345666777766  8999999999988877543322 233555544334444458899999999999


Q ss_pred             EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC
Q 012799          273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP  352 (456)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  352 (456)
                      .+.++...... ..++  ++                                    +..|+.+..++.|.++|..+.+..
T Consensus       119 ~~~ti~~~~eG-~glt--~d------------------------------------g~~L~~SdGs~~i~~iDp~T~~v~  159 (262)
T 3nol_A          119 QVRSFNYDGEG-WGLT--HN------------------------------------DQYLIMSDGTPVLRFLDPESLTPV  159 (262)
T ss_dssp             EEEEEECSSCC-CCEE--EC------------------------------------SSCEEECCSSSEEEEECTTTCSEE
T ss_pred             EEEEEECCCCc-eEEe--cC------------------------------------CCEEEEECCCCeEEEEcCCCCeEE
Confidence            99988753321 1222  22                                    344666666788999997665433


Q ss_pred             ccccc---ccc-ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          353 KTRMT---GHQ-QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       353 ~~~~~---~~~-~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                      .....   +.. ..++.+.|. +|++.+..-.++.|.+.|..+|+.+..+..
T Consensus       160 ~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          160 RTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL  210 (262)
T ss_dssp             EEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred             EEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence            22111   111 234557776 776665555688999999999999988864

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.73  E-value=3.4e-06  Score=70.27  Aligned_cols=158  Identities=15%  Similarity=0.106  Sum_probs=106.1

Q ss_pred             eEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc-cEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEE
Q 012799          196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI  274 (456)
Q Consensus       196 v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  274 (456)
                      ...+.|+      ++.++.+.+.+|.|+.+|+.+++.+..+ -... .-..++...+...++.-.++.+.+||..+.+.+
T Consensus        57 tqGL~~~------~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           57 TQGLVFH------QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             EEEEEEE------TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred             cceEEEE------CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEE
Confidence            3566664      3457777888899999999999887776 2222 223466665545555557899999999999999


Q ss_pred             EEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc
Q 012799          275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT  354 (456)
Q Consensus       275 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  354 (456)
                      .++...... ..++  ++                                    +..|+.+..++.|.++|..+.+....
T Consensus       130 ~ti~~~~eG-wGLt--~D------------------------------------g~~L~vSdGs~~l~~iDp~T~~v~~~  170 (268)
T 3nok_A          130 RTTRYSGEG-WGLC--YW------------------------------------NGKLVRSDGGTMLTFHEPDGFALVGA  170 (268)
T ss_dssp             EEEECSSCC-CCEE--EE------------------------------------TTEEEEECSSSEEEEECTTTCCEEEE
T ss_pred             EEEeCCCce-eEEe--cC------------------------------------CCEEEEECCCCEEEEEcCCCCeEEEE
Confidence            998753221 2222  22                                    44566666789999999766543222


Q ss_pred             ccc-ccc---ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          355 RMT-GHQ---QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       355 ~~~-~~~---~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                      ... .+.   ..++.+.|. +|++.+..-.++.|.+.|..+|+.+..+..
T Consensus       171 I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl  219 (268)
T 3nok_A          171 VQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDA  219 (268)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred             EEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence            111 111   234667776 776555555688999999999999988864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.73  E-value=2.5e-05  Score=69.79  Aligned_cols=258  Identities=10%  Similarity=-0.014  Sum_probs=153.4

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCcc
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~  186 (456)
                      .+..+|.+..+++ +|+.+ ....|+..++.......... ....+..++|++.+..|+.+ ...+.|..+++..+....
T Consensus        33 ~d~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~  109 (349)
T 3v64_C           33 PDRRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE  109 (349)
T ss_dssp             TTSSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CCCCcccccccCc-eeEee-cccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence            3444566666644 44443 34568888887655443333 44558899999866555544 457889999987665322


Q ss_pred             ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE-eCC-CcE
Q 012799          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG-SQD-CTI  263 (456)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~d-g~i  263 (456)
                       ...........+++.+.    .+..+++-...+.|.+.++........+.........++++|.+ .++.. ... +.|
T Consensus       110 -~~~~~~~~p~glavd~~----~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I  184 (349)
T 3v64_C          110 -VVSTGLESPGGLAVDWV----HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI  184 (349)
T ss_dssp             -EECSSCSCCCEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             -EEeCCCCCccEEEEecC----CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence             22222233456777651    34445555567889999987554333343444567899999854 54444 344 788


Q ss_pred             EEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEE
Q 012799          264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (456)
Q Consensus       264 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  343 (456)
                      ..+++........+.......+.++++++.                                   +..+++-...+.|..
T Consensus       185 ~r~~~dG~~~~~~~~~~~~~PnGla~d~~~-----------------------------------~~lY~aD~~~~~I~~  229 (349)
T 3v64_C          185 EASSMDGSGRRIIADTHLFWPNGLTIDYAG-----------------------------------RRMYWVDAKHHVIER  229 (349)
T ss_dssp             EEEETTSCSCEESCCSSCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEE
T ss_pred             EEEeCCCCCcEEEEECCCCCcceEEEeCCC-----------------------------------CEEEEEECCCCEEEE
Confidence            888876543333223233456788888752                                   333555566778999


Q ss_pred             EecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799          344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       344 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  410 (456)
                      +|+.... ..............+++ ..+.+.++-...+.|..++..+|+.+..+........++.+
T Consensus       230 ~~~dG~~-~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v  294 (349)
T 3v64_C          230 ANLDGSH-RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT  294 (349)
T ss_dssp             EETTSCS-CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred             EeCCCCc-eEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence            9865432 22222223345677887 34555556566788999987778777666543333344433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.73  E-value=2.7e-06  Score=84.49  Aligned_cols=157  Identities=11%  Similarity=0.070  Sum_probs=98.9

Q ss_pred             CCcc-cEEEEEEC-CCCCeEEEEEC-CC----cEEEEeCCCC-ccee-EEecCCCCEEEEEEcCCCCEEEEEeCC-----
Q 012799          106 GHTE-AVLSVAFS-PDGRQLASGSG-DT----TVRLWDLNTQ-TPMF-KCTGHKNWVLCIAWSADGKHLVSGSKA-----  171 (456)
Q Consensus       106 ~h~~-~V~~~~~s-~~~~~l~~~~~-d~----~v~vwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d-----  171 (456)
                      +|.- .+...+|| |||++||.+.. +|    .|+++|+.++ +.+. .+.   .....++|+|||+.|+....|     
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRE  246 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCC
Confidence            4553 78899999 99998886643 22    4999999988 6322 111   113468999999988877665     


Q ss_pred             CeEEEEeCCCCCCccccc-c-CcccceEEEEecccccCCCCCEEEEEeC---CCcEEEEECCCC--eE-EEEe-cCcCcc
Q 012799          172 GELQCWDPQTGKPSGNPL-S-GHKKWITGISWEPVHLNAPCRRFVSASK---DGDARIWDVSLR--KC-VICL-SGHTLA  242 (456)
Q Consensus       172 g~i~vwd~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~--~~-~~~~-~~~~~~  242 (456)
                      ..|.++++.++......+ . ........+.|+|     +|++|+..+.   ...|+++|+.++  +. +..+ ......
T Consensus       247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~  321 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-----DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV  321 (751)
T ss_dssp             EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-----TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred             CEEEEEECCCCchhcEEEEecCCCceEEEEEECC-----CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence            258888887764321111 1 2233456788988     9998887653   346888998775  23 1333 333445


Q ss_pred             EEEEEeCCCCeEE-EEeCC----CcEEEEECCC
Q 012799          243 VTCVKWGGDGVIY-TGSQD----CTIKVWETTQ  270 (456)
Q Consensus       243 v~~~~~~~~~~l~-~~~~d----g~i~iwd~~~  270 (456)
                      ...+.|+..+.|+ ....+    ..|..+|+.+
T Consensus       322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             CEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            5666655555444 43333    3577777764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.68  E-value=0.00014  Score=63.89  Aligned_cols=234  Identities=12%  Similarity=0.007  Sum_probs=139.6

Q ss_pred             EEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCC---CCccccccCcccceEE
Q 012799          123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTG---KPSGNPLSGHKKWITG  198 (456)
Q Consensus       123 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~  198 (456)
                      |+.+. ...|+..|+.+.+....+. ....+..++|++.+..|+. -..++.|..+++...   ................
T Consensus         4 ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            4 LFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             EEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            44443 3569999998776555443 4556889999986655554 455689999998761   2211122222234467


Q ss_pred             EEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC-CeEEEEeCC--CcEEEEECCCCeEEE
Q 012799          199 ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQD--CTIKVWETTQGKLIR  275 (456)
Q Consensus       199 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d--g~i~iwd~~~~~~~~  275 (456)
                      +++.+.    .+..+++-...+.|.+++.........+.........++++|. +.++.+...  +.|..+++... ...
T Consensus        82 lavd~~----~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~  156 (316)
T 1ijq_A           82 LAVDWI----HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIY  156 (316)
T ss_dssp             EEEETT----TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEE
T ss_pred             EEEeec----CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeE
Confidence            777651    3344455566789999998755433333333456789999985 455555443  68888887643 333


Q ss_pred             Ee-ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc
Q 012799          276 EL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT  354 (456)
Q Consensus       276 ~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  354 (456)
                      .+ ...-...+.++++++.                                   +..+++-...+.|..+|+..... ..
T Consensus       157 ~~~~~~~~~P~gla~d~~~-----------------------------------~~lY~~D~~~~~I~~~d~dg~~~-~~  200 (316)
T 1ijq_A          157 SLVTENIQWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGNR-KT  200 (316)
T ss_dssp             EEECSSCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred             EEEECCCCCceEEEEeccC-----------------------------------CEEEEEECCCCeEEEEecCCCce-EE
Confidence            33 2233456788888752                                   23345555677899999764322 11


Q ss_pred             ccc--cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          355 RMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       355 ~~~--~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                      ...  ..-.....+++. .+.++++-...+.|..++..+|+.+..+..
T Consensus       201 ~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~  247 (316)
T 1ijq_A          201 ILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE  247 (316)
T ss_dssp             EEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             EeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEec
Confidence            111  112345677775 355566666678999999888877666654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.68  E-value=3.1e-05  Score=70.23  Aligned_cols=254  Identities=11%  Similarity=-0.003  Sum_probs=151.7

Q ss_pred             EEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCccccc
Q 012799          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPL  189 (456)
Q Consensus       111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~  189 (456)
                      -.|.+..+.+ +|+.+ ....|+..++.......... ....+..++|.+.+..|+ +-...+.|..+++..+.... ..
T Consensus        79 ~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-~~  154 (386)
T 3v65_B           79 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-VV  154 (386)
T ss_dssp             SCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-EE
T ss_pred             CeECCccccc-eeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-EE
Confidence            3455555533 44443 34578999987665444443 445688999998655555 44567889999987654322 12


Q ss_pred             cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CC-CcEEEE
Q 012799          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QD-CTIKVW  266 (456)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~d-g~i~iw  266 (456)
                      .........+++.+.    .+..+++-...+.|.+.++........+.........++++|.+ .|+.+. .. +.|..+
T Consensus       155 ~~~~~~p~glavd~~----~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~  230 (386)
T 3v65_B          155 STGLESPGGLAVDWV----HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS  230 (386)
T ss_dssp             CSSCSCCCCEEEETT----TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             eCCCCCccEEEEEeC----CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence            222223455666651    33444555556788888876554333344444567899999855 555444 34 678888


Q ss_pred             ECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEec
Q 012799          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (456)
Q Consensus       267 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  346 (456)
                      ++................+.++++++.                                   +..+++-...+.|..+|+
T Consensus       231 ~~dG~~~~~~~~~~~~~PnGlavd~~~-----------------------------------~~lY~aD~~~~~I~~~d~  275 (386)
T 3v65_B          231 SMDGSGRRIIADTHLFWPNGLTIDYAG-----------------------------------RRMYWVDAKHHVIERANL  275 (386)
T ss_dssp             ETTSCSCEEEECSSCSCEEEEEEEGGG-----------------------------------TEEEEEETTTTEEEEECT
T ss_pred             eCCCCCcEEEEECCCCCeeeEEEeCCC-----------------------------------CEEEEEECCCCEEEEEeC
Confidence            886543333333334456788888652                                   333555566778999986


Q ss_pred             CCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEE
Q 012799          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR  409 (456)
Q Consensus       347 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~  409 (456)
                      .... ..............+++ ..+.++++-...+.|..++..+|+.+..+........++.
T Consensus       276 dG~~-~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~  336 (386)
T 3v65_B          276 DGSH-RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH  336 (386)
T ss_dssp             TSCS-CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred             CCCe-eEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence            5432 22222223345677888 3455566666778899999778877777664433334443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.66  E-value=1e-05  Score=66.85  Aligned_cols=171  Identities=14%  Similarity=0.078  Sum_probs=116.7

Q ss_pred             ccEEEEEECCCCCeEEEEECC--CcEEEEeCCCCcceeEEecCCCC-EEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCC
Q 012799          109 EAVLSVAFSPDGRQLASGSGD--TTVRLWDLNTQTPMFKCTGHKNW-VLCIAWSADGKHLV-SGSKAGELQCWDPQTGKP  184 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d--~~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~  184 (456)
                      .-...+.|++ +.++.+.+.+  ..|+++|+.+++.+....-.... -..+++.  ++.|. ..-.++.+.+||.++.+.
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~   97 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP   97 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence            3466899986 5556666654  48999999999998887633221 1234443  44444 445688999999999887


Q ss_pred             ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC-----ccEEEEEeCCCCeEEEEe-
Q 012799          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-----LAVTCVKWGGDGVIYTGS-  258 (456)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~-  258 (456)
                      +.+...+.  .-..+++       ++..|+.+..++.|.++|..+.+.+..+.-..     ..++.+.+. +|.+++.. 
T Consensus        98 ~~ti~~~~--~Gwglt~-------dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw  167 (243)
T 3mbr_X           98 RARFRYPG--EGWALTS-------DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW  167 (243)
T ss_dssp             EEEEECSS--CCCEEEE-------CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             EEEEeCCC--CceEEee-------CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence            66433322  2234443       56667777778999999999988887775322     345666766 56566555 


Q ss_pred             CCCcEEEEECCCCeEEEEeecC-------------CcceEEEEecCc
Q 012799          259 QDCTIKVWETTQGKLIRELKGH-------------GHWVNSLALSTE  292 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~~~~~~~  292 (456)
                      .+..|.+.|.++++.+..+...             ....+.|+++|+
T Consensus       168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~  214 (243)
T 3mbr_X          168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE  214 (243)
T ss_dssp             TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred             CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence            5789999999999998887522             124578888886

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.65  E-value=1.7e-05  Score=65.50  Aligned_cols=160  Identities=13%  Similarity=0.084  Sum_probs=103.9

Q ss_pred             cceEEEEecccccCCCCCEEEEEeCC--CcEEEEECCCCeEEEEecCcCcc-EEEEEeCCCCeEEEEeCCCcEEEEECCC
Q 012799          194 KWITGISWEPVHLNAPCRRFVSASKD--GDARIWDVSLRKCVICLSGHTLA-VTCVKWGGDGVIYTGSQDCTIKVWETTQ  270 (456)
Q Consensus       194 ~~v~~~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~l~~~~~dg~i~iwd~~~  270 (456)
                      .....+.|++      +..+.+.+.+  +.|+.+|+.+++.+..+.-.... -..++...+......-.++.+.+||..+
T Consensus        21 ~ftqGL~~~~------~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t   94 (243)
T 3mbr_X           21 AFTEGLFYLR------GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLAT   94 (243)
T ss_dssp             CCEEEEEEET------TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             cccccEEEEC------CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCc
Confidence            3456777754      3455555654  48999999999998877543322 2344554443444455688999999999


Q ss_pred             CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC
Q 012799          271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK  350 (456)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  350 (456)
                      .+.+.++...... ..++  ++                                    +..|+.+..++.|.++|..+.+
T Consensus        95 l~~~~ti~~~~~G-wglt--~d------------------------------------g~~L~vSdgs~~l~~iDp~t~~  135 (243)
T 3mbr_X           95 LTPRARFRYPGEG-WALT--SD------------------------------------DSHLYMSDGTAVIRKLDPDTLQ  135 (243)
T ss_dssp             TEEEEEEECSSCC-CEEE--EC------------------------------------SSCEEEECSSSEEEEECTTTCC
T ss_pred             CcEEEEEeCCCCc-eEEe--eC------------------------------------CCEEEEECCCCeEEEEeCCCCe
Confidence            9999998754322 2333  22                                    3346666678899999976654


Q ss_pred             CCccccc-ccc---ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799          351 QPKTRMT-GHQ---QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       351 ~~~~~~~-~~~---~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  399 (456)
                      ....... .+.   ..++.+.+. +|+..+..-.+..|.+.|..+|+.+..+.
T Consensus       136 ~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~id  187 (243)
T 3mbr_X          136 QVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWID  187 (243)
T ss_dssp             EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred             EEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence            3222111 111   234566665 67655555567899999999999998876

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.64  E-value=2.3e-05  Score=69.36  Aligned_cols=236  Identities=12%  Similarity=0.072  Sum_probs=132.8

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEec--------------------CCCCEEEEEEcCCCCEEEEEe
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG--------------------HKNWVLCIAWSADGKHLVSGS  169 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~l~s~~  169 (456)
                      ...+++|+++|+++.++..++.|..|+..+++.. .+..                    ....+..+++.+++..|+.+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            4567889999998888888999999998765432 2210                    113578999998333455555


Q ss_pred             CCCeEEEEeCCCCCCccc--cccC-cccceEEEEecccccCCCCCEEEEEeC-----------------CCcEEEEECCC
Q 012799          170 KAGELQCWDPQTGKPSGN--PLSG-HKKWITGISWEPVHLNAPCRRFVSASK-----------------DGDARIWDVSL  229 (456)
Q Consensus       170 ~dg~i~vwd~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~  229 (456)
                      ..+.|..+|..++.....  ...+ .......+++.+.    +|..+++-..                 ++.|..||..+
T Consensus        99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~----~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR----TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTT----TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecC----CCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            556688888776542210  0011 1123455665441    4445444322                 36788888876


Q ss_pred             CeEEEEecCcCccEEEEEeCCCC-eEEEE-eCCCcEEEEECCCCe--EEEEeecCCcceEEEEecCcceeeeccccCCCC
Q 012799          230 RKCVICLSGHTLAVTCVKWGGDG-VIYTG-SQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (456)
Q Consensus       230 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  305 (456)
                      ++...... .......+++++++ .++++ ...+.|..|++....  ....+..... ...+++.+++            
T Consensus       175 ~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G------------  240 (322)
T 2fp8_A          175 KETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADG------------  240 (322)
T ss_dssp             TEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTS------------
T ss_pred             CEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCC------------
Confidence            65433222 12334578999998 56555 456889999987421  1111111112 4556666653            


Q ss_pred             ccCChHHHHHHHHhhhhhccCCCCCEEEEEeC----------CCcEEEEecCCCCCCccccccc----cccEeEEEECCC
Q 012799          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSD----------DFTMFLWEPAVSKQPKTRMTGH----QQLVNHVYFSPD  371 (456)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~sp~  371 (456)
                                              .+.++...          .+.|..+|.. + .....+...    -..++.+++ .+
T Consensus       241 ------------------------~l~va~~~~~~~~~~~~~~~~v~~~d~~-G-~~~~~~~~~~g~~~~~~~~~~~-~~  293 (322)
T 2fp8_A          241 ------------------------HFWVSSSEELDGNMHGRVDPKGIKFDEF-G-NILEVIPLPPPFAGEHFEQIQE-HD  293 (322)
T ss_dssp             ------------------------CEEEEEEEETTSSTTSCEEEEEEEECTT-S-CEEEEEECCTTTTTSCCCEEEE-ET
T ss_pred             ------------------------CEEEEecCcccccccCCCccEEEEECCC-C-CEEEEEECCCCCccccceEEEE-eC
Confidence                                    33333322          3567777742 2 222222211    234666666 36


Q ss_pred             CCEEEEEECCCcEEEEeCCC
Q 012799          372 GQWVASASFDKSIKLWNGTT  391 (456)
Q Consensus       372 ~~~l~s~~~dg~i~iwd~~~  391 (456)
                      +++.++....+.|..+++..
T Consensus       294 g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          294 GLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TEEEEECSSCSEEEEEEC--
T ss_pred             CEEEEeecCCCceEEEeccc
Confidence            66666666778888888753

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.60  E-value=0.00014  Score=63.87  Aligned_cols=232  Identities=9%  Similarity=-0.015  Sum_probs=138.7

Q ss_pred             CCcEEEEeCCCCcc-eeEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCccccccCcccceEEEEeccccc
Q 012799          129 DTTVRLWDLNTQTP-MFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (456)
Q Consensus       129 d~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  206 (456)
                      ...|+..+++.... ..........+..++|.+.+..| ++-...+.|..+++..+................+++.+.  
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~--   89 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL--   89 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT--
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC--
Confidence            45799999886641 22222223457789999855444 455567889999987664221122222234556776651  


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC-CeEEEEeC--CCcEEEEECCCCeEEEEeecCCcc
Q 012799          207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQ--DCTIKVWETTQGKLIRELKGHGHW  283 (456)
Q Consensus       207 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~  283 (456)
                        .+..+++-...+.|.++++..................++++|. +.++.+..  .+.|..+++........+...-..
T Consensus        90 --~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~  167 (318)
T 3sov_A           90 --GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW  167 (318)
T ss_dssp             --TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC
T ss_pred             --CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCC
Confidence              3445555556788999998754433333344456789999985 46665553  578888887643322222223344


Q ss_pred             eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccE
Q 012799          284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV  363 (456)
Q Consensus       284 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  363 (456)
                      -+.++++++.                                   +..+++-+..+.|..+|+.... ......+.....
T Consensus       168 Pnglavd~~~-----------------------------------~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P  211 (318)
T 3sov_A          168 PNGLTLDYEE-----------------------------------QKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHP  211 (318)
T ss_dssp             EEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCS-CEEEECSCCSCE
T ss_pred             ccEEEEeccC-----------------------------------CEEEEEECCCCEEEEEcCCCCc-eEEEecCCCCCc
Confidence            5788888752                                   3335555667889999865432 222222233456


Q ss_pred             eEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecc
Q 012799          364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (456)
Q Consensus       364 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  401 (456)
                      ..+++.. +.++.+-...+.|..++..+|+....+...
T Consensus       212 ~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~~  248 (318)
T 3sov_A          212 FALTLFE-DILYWTDWSTHSILACNKYTGEGLREIHSD  248 (318)
T ss_dssp             EEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECC
T ss_pred             eEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEeCC
Confidence            6777753 345555556788999998888876666543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.56  E-value=0.00035  Score=63.55  Aligned_cols=245  Identities=11%  Similarity=-0.004  Sum_probs=147.9

Q ss_pred             eEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCC---CccccccCcccceE
Q 012799          122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGK---PSGNPLSGHKKWIT  197 (456)
Q Consensus       122 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~  197 (456)
                      +|+.+. ...|+..++......... .....+..++|++.+..|+.+ ...+.|..+++....   ..............
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            444443 467999998866544443 356678999999866655554 456789999987532   11112222334566


Q ss_pred             EEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC-CeEEEEeC--CCcEEEEECCCCeEE
Q 012799          198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQ--DCTIKVWETTQGKLI  274 (456)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~--dg~i~iwd~~~~~~~  274 (456)
                      .+++.+.    .+..+++-...+.|.+.++........+.........++++|. +.|+....  .+.|...++......
T Consensus       163 glavD~~----~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~  238 (400)
T 3p5b_L          163 GLAVDWI----HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  238 (400)
T ss_dssp             EEEEETT----TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred             cEEEEec----CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence            7777652    3345555556788999998766544444444456789999985 45555543  378988988754433


Q ss_pred             EEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc
Q 012799          275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT  354 (456)
Q Consensus       275 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  354 (456)
                      ..+...-...+.|++++..                                   +..+++-...+.|..+|+..... ..
T Consensus       239 ~~~~~~l~~P~glavd~~~-----------------------------------~~lY~aD~~~~~I~~~d~dG~~~-~~  282 (400)
T 3p5b_L          239 SLVTENIQWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGNR-KT  282 (400)
T ss_dssp             EEECSSCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCCC-EE
T ss_pred             EEEECCCCceEEEEEEeCC-----------------------------------CEEEEEECCCCEEEEEeCCCCcc-EE
Confidence            3333333566788888652                                   23345555677899998654332 22


Q ss_pred             cccc--ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEE
Q 012799          355 RMTG--HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR  409 (456)
Q Consensus       355 ~~~~--~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~  409 (456)
                      ....  .-.....+++. .+.++++-...+.|..+|..+|+.+..+........++.
T Consensus       283 ~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          283 ILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             EEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred             EEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence            2221  22345567773 344555666678899999888887777765444455553

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.55  E-value=3.5e-05  Score=64.60  Aligned_cols=200  Identities=12%  Similarity=0.079  Sum_probs=123.1

Q ss_pred             EecCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799          146 CTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (456)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i  224 (456)
                      +.+-...+..++|+|+++.|+ +...++.|...|.. ++........-......+++.+     ++.++++.-.++.+.+
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-----~g~~~vs~E~~~~l~~   95 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-----DNQFVISDERDYAIYV   95 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-----TTEEEEEETTTTEEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-----CCEEEEEECCCCcEEE
Confidence            445556799999999766555 56778889999997 6655433223235677888876     7766666556778999


Q ss_pred             EECCCCeE---EEEec------CcCccEEEEEeCCCC-eEEEEeCCCcEEEEECC---CCeEEEEee-------cCCcce
Q 012799          225 WDVSLRKC---VICLS------GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT---QGKLIRELK-------GHGHWV  284 (456)
Q Consensus       225 wd~~~~~~---~~~~~------~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~---~~~~~~~~~-------~~~~~i  284 (456)
                      +++.....   +....      ........++|+|.+ .|+++.......+|.+.   ....+..+.       ......
T Consensus        96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred             EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence            98765432   12221      234457899999988 77776665554555443   111111111       112245


Q ss_pred             EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc--cc-cc--
Q 012799          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR--MT-GH--  359 (456)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~-~~--  359 (456)
                      .+++++|.                                   .+.+++.+..+..+..+|.. +. ++..  +. +.  
T Consensus       176 S~l~~dp~-----------------------------------tg~lliLS~~s~~L~~~d~~-g~-~~~~~~L~~g~~~  218 (255)
T 3qqz_A          176 SGAEFNQQ-----------------------------------KNTLLVLSHESRALQEVTLV-GE-VIGEMSLTKGSRG  218 (255)
T ss_dssp             CEEEEETT-----------------------------------TTEEEEEETTTTEEEEECTT-CC-EEEEEECSTTGGG
T ss_pred             eeEEEcCC-----------------------------------CCeEEEEECCCCeEEEEcCC-CC-EEEEEEcCCccCC
Confidence            66666665                                   25567777778888888844 32 2221  11 11  


Q ss_pred             ----cccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799          360 ----QQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (456)
Q Consensus       360 ----~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  389 (456)
                          -.....|+|.++|++.++ ++.+.++.+.-
T Consensus       219 l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          219 LSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             CSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             cccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence                125688999999985544 67776766653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.47  E-value=0.00019  Score=65.00  Aligned_cols=193  Identities=8%  Similarity=-0.058  Sum_probs=112.6

Q ss_pred             eEEEeecccccccccCCcccEEEEEECCCCCeEE-EEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCE-EEEE
Q 012799           91 VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVSG  168 (456)
Q Consensus        91 ~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~  168 (456)
                      +.++.+.+.....+......+..++|++.+..|+ +-...+.|+.++.+.......+.........+++.+.+.. .++-
T Consensus        98 I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d  177 (386)
T 3v65_B           98 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD  177 (386)
T ss_dssp             EEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEE
T ss_pred             ceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEc
Confidence            3444443333333333445678999997655554 4446778999998866544434333345677899875544 4555


Q ss_pred             eCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEe-CC-CcEEEEECCCCeEEEEecCcCccEEEE
Q 012799          169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KD-GDARIWDVSLRKCVICLSGHTLAVTCV  246 (456)
Q Consensus       169 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~  246 (456)
                      ...+.|.+.+++...... ...........+++.|     .+..++... .. +.|..+++............-.....+
T Consensus       178 ~~~~~I~~~~~dg~~~~~-l~~~~l~~P~giavdp-----~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl  251 (386)
T 3v65_B          178 SGTSRIEVANLDGAHRKV-LLWQSLEKPRAIALHP-----MEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL  251 (386)
T ss_dssp             TTTTEEEECBTTSCSCEE-EECSSCSCEEEEEEET-----TTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             CCCCeEEEEeCCCCceEE-eecCCCCCCcEEEEEc-----CCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeE
Confidence            557789999887543221 2333334567888887     445555444 34 678888876543333333334457889


Q ss_pred             EeCCCC-eEEEE-eCCCcEEEEECCCCeEEEEeecCCcceEEEEe
Q 012799          247 KWGGDG-VIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLAL  289 (456)
Q Consensus       247 ~~~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  289 (456)
                      ++++++ .|+.+ +..+.|..+|+........+.........+++
T Consensus       252 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav  296 (386)
T 3v65_B          252 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV  296 (386)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE
Confidence            999754 55544 45678999998654333223222233345555

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.47  E-value=0.00035  Score=62.31  Aligned_cols=176  Identities=8%  Similarity=-0.089  Sum_probs=106.1

Q ss_pred             cccEEEEEECCCCCeEEEE-ECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCCCc
Q 012799          108 TEAVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKPS  185 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~  185 (456)
                      ...+..++|++....|... ...+.|..++.+.......+.........+++.+.+. +.++-...+.|.+.+++.....
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  151 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence            3457899999765555544 4678899999886654444433344567899987554 4455556788999998754322


Q ss_pred             cccccCcccceEEEEecccccCCCCCEEEEEe-CC-CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE-eCCC
Q 012799          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KD-GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG-SQDC  261 (456)
Q Consensus       186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg  261 (456)
                      . ...........+++.|     .+..++... .. +.|..+++............-.....+++++++ .|+.+ ...+
T Consensus       152 ~-l~~~~l~~P~~iavdp-----~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~  225 (349)
T 3v64_C          152 V-LLWQSLEKPRAIALHP-----MEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH  225 (349)
T ss_dssp             E-EECTTCSCEEEEEEET-----TTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             E-EEeCCCCCcceEEEec-----CcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCC
Confidence            1 2223334567888887     444444443 44 778888876443322222234457899999755 55554 4567


Q ss_pred             cEEEEECCCCeEEEEeecCCcceEEEEe
Q 012799          262 TIKVWETTQGKLIRELKGHGHWVNSLAL  289 (456)
Q Consensus       262 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~  289 (456)
                      .|..+|+........+.........+++
T Consensus       226 ~I~~~~~dG~~~~~~~~~~~~~P~giav  253 (349)
T 3v64_C          226 VIERANLDGSHRKAVISQGLPHPFAITV  253 (349)
T ss_dssp             EEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred             EEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence            8999998754332223222233344554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.46  E-value=0.00063  Score=60.05  Aligned_cols=265  Identities=8%  Similarity=-0.058  Sum_probs=139.4

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe----cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  183 (456)
                      ...+.++.|.+++..+++ +.+|.| +...+.++.-....    .....+.++.|.+ +. ++.++.++.|.. ..+.|+
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC
Confidence            457999999888877775 466755 33334443222221    1244688999976 44 444556665443 223333


Q ss_pred             Ccccccc--CcccceEEEEecccccCCCCCEEEEEeCCCcEEE-EECCCCeEE-EEecCcCccEEEEEeCCCCeEEEEeC
Q 012799          184 PSGNPLS--GHKKWITGISWEPVHLNAPCRRFVSASKDGDARI-WDVSLRKCV-ICLSGHTLAVTCVKWGGDGVIYTGSQ  259 (456)
Q Consensus       184 ~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~l~~~~~  259 (456)
                      .-.....  .+...+..+.+.+     ++..+++ +.+|.|.. .|  .++.- .........+..+.+.+++.+++.+.
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~-----~~~~~~~-~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~  181 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALG-----NGSAEMI-TNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS  181 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEE-----TTEEEEE-ETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEET
T ss_pred             CceECccccCCCCCeEEEEEEC-----CCCEEEE-eCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEEC
Confidence            2211111  1234466676654     4545544 45565432 22  22211 12234456788999999886666666


Q ss_pred             CCcEEEE-EC--CCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe
Q 012799          260 DCTIKVW-ET--TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (456)
Q Consensus       260 dg~i~iw-d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (456)
                      +|.+..- |-  .+-+.+.  ......+..+.+.++.                                    . ++.++
T Consensus       182 ~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g------------------------------------~-~~~~~  222 (327)
T 2xbg_A          182 RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDG------------------------------------R-LWMIV  222 (327)
T ss_dssp             TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTS------------------------------------C-EEEEE
T ss_pred             CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCC------------------------------------C-EEEEe
Confidence            6665543 32  2223321  2234456677766552                                    2 45556


Q ss_pred             CCCcEEEEecCCCCC--Ccccc-ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec---ccccEEEEEe
Q 012799          337 DDFTMFLWEPAVSKQ--PKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQIRF  410 (456)
Q Consensus       337 ~dg~i~iwd~~~~~~--~~~~~-~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~i~~  410 (456)
                      .+|.+++.+...+..  ....- ..+...+..+++.+++.+++++ .+|.+ ++....|+.-..+..   ....+.++  
T Consensus       223 ~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v--  298 (327)
T 2xbg_A          223 NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKI--  298 (327)
T ss_dssp             TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEE--
T ss_pred             CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEE--
Confidence            677777663111111  11100 0122358889999888776665 46766 444455554443331   22345566  


Q ss_pred             eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceE
Q 012799          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLK  454 (456)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~  454 (456)
                                               .|.+++ .++.++.+|.|.
T Consensus       299 -------------------------~~~~~~-~~~~~G~~G~i~  316 (327)
T 2xbg_A          299 -------------------------LFFSPD-QGFILGQKGILL  316 (327)
T ss_dssp             -------------------------EEEETT-EEEEECSTTEEE
T ss_pred             -------------------------EEECCC-ceEEEcCCceEE
Confidence                                     666554 466667788765

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.43  E-value=0.00038  Score=58.32  Aligned_cols=183  Identities=11%  Similarity=0.099  Sum_probs=120.1

Q ss_pred             cccCCcccEEEEEECCCCCeE-EEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799          103 TIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       103 ~l~~h~~~V~~~~~s~~~~~l-~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  180 (456)
                      .+.|-.+.+..++|+|++..| ++...++.|...|.. ++.+..+. +-....-.|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            455666789999999976644 556778899999987 77777764 223567889999888877776677889998876


Q ss_pred             CCCCc---ccc-----ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC---CeEEEEe-------cCcCcc
Q 012799          181 TGKPS---GNP-----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---RKCVICL-------SGHTLA  242 (456)
Q Consensus       181 ~~~~~---~~~-----~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~-------~~~~~~  242 (456)
                      .....   ...     ..........++|.|     .++.|+++.......+|.+..   ...+..+       ..+...
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-----~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSR-----QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEET-----TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeC-----CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence            54421   100     112345578999998     677777777665555555531   1111111       112345


Q ss_pred             EEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCC---------cceEEEEecCc
Q 012799          243 VTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHG---------HWVNSLALSTE  292 (456)
Q Consensus       243 v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~~~~  292 (456)
                      +..++++|..  .++....++.+..+|.. ++.+..+.-..         ..-..|++.++
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~  234 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS  234 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTT
T ss_pred             ceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCC
Confidence            7889999966  55666667789999966 55655554332         24577888876

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.33  E-value=0.00022  Score=65.52  Aligned_cols=153  Identities=11%  Similarity=0.130  Sum_probs=92.9

Q ss_pred             cEEEEEECC-CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC-C----eEEEEeCCCCC
Q 012799          110 AVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G----ELQCWDPQTGK  183 (456)
Q Consensus       110 ~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g----~i~vwd~~~~~  183 (456)
                      ....++++| ++..|..+...+.|+.+|..++... .+.........++|++++++|+.+... +    .+...+. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            457899998 4555666555478999998765543 333455678999999999966666542 1    2333443 332


Q ss_pred             Ccc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CcCccEEEEEeCCCC-eEEEEe-C
Q 012799          184 PSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYTGS-Q  259 (456)
Q Consensus       184 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~-~  259 (456)
                      ... ..+. .......++++|.    ++..+++-..++.|..++...+....... ........++++|++ .|+.+. .
T Consensus       216 ~~~~~~l~-~~~~p~giavdp~----~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          216 FKVITELT-KGQNCNGAETHPI----NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             SCSEEEEE-ECSSCCCEEECTT----TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred             eeeeeeec-cCCCceEEEEeCC----CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence            221 0111 1223345566651    34555555567889999998776422221 122446789999999 455554 5


Q ss_pred             CCcEEEEECC
Q 012799          260 DCTIKVWETT  269 (456)
Q Consensus       260 dg~i~iwd~~  269 (456)
                      .+.|..++..
T Consensus       291 ~~~I~~~~~d  300 (430)
T 3tc9_A          291 QHYILRSDYD  300 (430)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEeCC
Confidence            6788887765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.32  E-value=0.0018  Score=58.84  Aligned_cols=163  Identities=7%  Similarity=-0.064  Sum_probs=103.1

Q ss_pred             ccCCcccEEEEEECCCCCeEEEE-ECCCcEEEEeCCCC----cceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEE
Q 012799          104 IAGHTEAVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQ----TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCW  177 (456)
Q Consensus       104 l~~h~~~V~~~~~s~~~~~l~~~-~~d~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vw  177 (456)
                      +......+..++|++.+..|..+ ...+.|+.+++...    .....+.........+++.+ .+++.++-...+.|.+.
T Consensus       107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~  186 (400)
T 3p5b_L          107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  186 (400)
T ss_dssp             EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence            33455678899999866555554 45678999988752    23333333456788999988 45555555667889999


Q ss_pred             eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (456)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l  254 (456)
                      +++...... ...........+++.|     .+..|+....  .+.|...++............-.....+++++++ .|
T Consensus       187 ~~~g~~~~~-l~~~~~~~P~~iavdp-----~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~l  260 (400)
T 3p5b_L          187 DTKGVKRKT-LFRENGSKPRAIVVDP-----VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL  260 (400)
T ss_dssp             CTTTCSEEE-EEECSSCCEEEEEEET-----TTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred             eCCCCceEE-EEeCCCCCcceEEEec-----ccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEE
Confidence            987554322 2322334567888887     4455555543  3678888886544333333334567899999765 66


Q ss_pred             EEEe-CCCcEEEEECCCCe
Q 012799          255 YTGS-QDCTIKVWETTQGK  272 (456)
Q Consensus       255 ~~~~-~dg~i~iwd~~~~~  272 (456)
                      +.+. ..+.|..+|+....
T Consensus       261 Y~aD~~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          261 YWVDSKLHSISSIDVNGGN  279 (400)
T ss_dssp             EEEETTTTEEEEEETTSCC
T ss_pred             EEEECCCCEEEEEeCCCCc
Confidence            5554 46789999986543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.26  E-value=0.0013  Score=58.04  Aligned_cols=229  Identities=10%  Similarity=0.003  Sum_probs=125.2

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe---cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT---GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  184 (456)
                      ...+.++.|++ +..++. +.++.|.. ..+.++.-....   .+...+..+.+.+++..++.+ .+|.|.. ..+.|+.
T Consensus        79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred             CccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence            45789999986 454444 45664443 333343322222   233557888887777666555 4554322 1223433


Q ss_pred             ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC--CCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCc
Q 012799          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV--SLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCT  262 (456)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~  262 (456)
                      -..........+..+.+.+     ++..++.+...+..+-+|-  .+.+.+.  ......+..+.+.+++.++.++.+|.
T Consensus       154 W~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~  226 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSP-----SGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGK  226 (327)
T ss_dssp             EEEEECSCCCCEEEEEECT-----TSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTE
T ss_pred             CEEeecCCCcceEEEEEcC-----CCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCce
Confidence            2222334455678888877     6666665544333344442  3334332  23456788999999887777788888


Q ss_pred             EEEEECCCCeEEEEeecC----CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799          263 IKVWETTQGKLIRELKGH----GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (456)
Q Consensus       263 i~iwd~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (456)
                      +++.+...++.-..+...    ...+..+.+.++                                    +. ++.++.+
T Consensus       227 ~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~------------------------------------~~-~~~~g~~  269 (327)
T 2xbg_A          227 IAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP------------------------------------NE-VWLAGGA  269 (327)
T ss_dssp             EEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS------------------------------------SC-EEEEEST
T ss_pred             EEEecCCCCCeeEeccCCcccCCcceEEEEecCC------------------------------------CE-EEEEeCC
Confidence            877653334433333211    224666766654                                    22 4444556


Q ss_pred             CcEEEEecCCCCCCccccc---cccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799          339 FTMFLWEPAVSKQPKTRMT---GHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (456)
Q Consensus       339 g~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  388 (456)
                      +.+.. ....+. ......   .....+.++.|.++++ +++++.+|.|.-++
T Consensus       270 g~i~~-S~DgG~-tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          270 GALLC-SQDGGQ-TWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             TCEEE-ESSTTS-SCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             CeEEE-eCCCCc-ccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            76633 323232 222222   2235578888875554 55666789777665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.25  E-value=0.00023  Score=70.63  Aligned_cols=112  Identities=13%  Similarity=0.144  Sum_probs=73.6

Q ss_pred             CEEEEEEc-CCCCEEEEEeC-CC----eEEEEeCCCC-CCccccccCcccceEEEEecccccCCCCCEEEEEeCC-----
Q 012799          152 WVLCIAWS-ADGKHLVSGSK-AG----ELQCWDPQTG-KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----  219 (456)
Q Consensus       152 ~v~~~~~~-~~~~~l~s~~~-dg----~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----  219 (456)
                      .+...+|| |||++||.+.. +|    .|+++|+.++ +.+...+   ......+.|+|     +++.|+....+     
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~Wsp-----Dg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGP-----DHTSLFYVTKDETLRE  246 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECS-----STTEEEEEEECTTCCE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEec-----CCCEEEEEEECCCCCC
Confidence            67889999 99998886543 22    5999999998 6332111   11234678888     88888877765     


Q ss_pred             CcEEEEECCCCeE--EEEec-CcCccEEEEEeCCCC-eEEEEeC---CCcEEEEECCCC
Q 012799          220 GDARIWDVSLRKC--VICLS-GHTLAVTCVKWGGDG-VIYTGSQ---DCTIKVWETTQG  271 (456)
Q Consensus       220 g~i~iwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~-~l~~~~~---dg~i~iwd~~~~  271 (456)
                      ..|+.+++.++..  ...+. ........+.|+|+| .|+..+.   ...|.++|+.++
T Consensus       247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            2588888876531  22222 223446788999999 5554432   346888888765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.23  E-value=0.00035  Score=64.28  Aligned_cols=199  Identities=8%  Similarity=0.035  Sum_probs=114.4

Q ss_pred             CCEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC---C-cEEE
Q 012799          151 NWVLCIAWSAD--GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD---G-DARI  224 (456)
Q Consensus       151 ~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---g-~i~i  224 (456)
                      .....++|+|+  +..|+.+...+.|+.++..++....  +.........+++++     +++++++-...   . .+..
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~--~~~~~~~P~giavd~-----dG~lyVad~~~~~~~~gv~~  211 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI--KTTNIGQCADVNFTL-----NGDMVVVDDQSSDTNTGIYL  211 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE--ECCCCSCEEEEEECT-----TCCEEEEECCSCTTSEEEEE
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE--eecCCCCccEEEECC-----CCCEEEEcCCCCcccceEEE
Confidence            34678999984  4556665554889999998776543  223345578899988     88844443321   1 1333


Q ss_pred             EECCCCeE-EEEecCcCccEEEEEeCC-CCeEEEEe-CCCcEEEEECCCCeEEEEe-ec-CCcceEEEEecCcceeeecc
Q 012799          225 WDVSLRKC-VICLSGHTLAVTCVKWGG-DGVIYTGS-QDCTIKVWETTQGKLIREL-KG-HGHWVNSLALSTEYALRTGA  299 (456)
Q Consensus       225 wd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~~~~~  299 (456)
                      .+...+.. ...+. .......+++++ ++.|+.+. .++.|+.+|..++.....+ .. ....-..++++|+       
T Consensus       212 ~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpd-------  283 (433)
T 4hw6_A          212 FTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPT-------  283 (433)
T ss_dssp             ECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTT-------
T ss_pred             EECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCC-------
Confidence            33221110 01111 123345678888 66665554 5678999999877653332 21 1122345788877       


Q ss_pred             ccCCCCccCChHHHHHHHHhhhhhccCCCCC-EEEEEeCCCcEEEEecCCCCCCc---ccccc---------------cc
Q 012799          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPE-RLVSGSDDFTMFLWEPAVSKQPK---TRMTG---------------HQ  360 (456)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~---~~~~~---------------~~  360 (456)
                                                   ++ .+++-...+.|+.++........   ..+.+               .-
T Consensus       284 -----------------------------G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~  334 (433)
T 4hw6_A          284 -----------------------------GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARL  334 (433)
T ss_dssp             -----------------------------SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBC
T ss_pred             -----------------------------CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEE
Confidence                                         44 35555567788887754321110   01111               11


Q ss_pred             ccEeEEEE---------CCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799          361 QLVNHVYF---------SPDGQWVASASFDKSIKLWNGTTGKF  394 (456)
Q Consensus       361 ~~v~~~~~---------sp~~~~l~s~~~dg~i~iwd~~~~~~  394 (456)
                      .....+++         .++|.+.++-...++|+.++. +|..
T Consensus       335 ~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v  376 (433)
T 4hw6_A          335 WGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV  376 (433)
T ss_dssp             SSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE
T ss_pred             cCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE
Confidence            23677899         777877777667788999984 5643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=0.00037  Score=64.05  Aligned_cols=134  Identities=9%  Similarity=0.078  Sum_probs=80.7

Q ss_pred             CEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CC----cEEEE
Q 012799          152 WVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DG----DARIW  225 (456)
Q Consensus       152 ~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg----~i~iw  225 (456)
                      ....|+++| ++..|+.+...+.|+.+|+..+....  +.........++|++     +++.++++.. ++    .+..+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~--~~~~~~~P~~ia~d~-----~G~~lyvad~~~~~~~~~v~~~  210 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST--VYSGLSKVRTICWTH-----EADSMIITNDQNNNDRPNNYIL  210 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE--EECCCSCEEEEEECT-----TSSEEEEEECCSCTTSEEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE--EecCCCCcceEEEeC-----CCCEEEEEeCCCCcccceEEEE
Confidence            567899998 45667666665889999998765432  222345578899988     8886666554 22    23334


Q ss_pred             ECCCCeE-EEEecCcCccEEEEEeCC-CCeEEEE-eCCCcEEEEECCCCeEEEEeec-CCcceEEEEecCcc
Q 012799          226 DVSLRKC-VICLSGHTLAVTCVKWGG-DGVIYTG-SQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEY  293 (456)
Q Consensus       226 d~~~~~~-~~~~~~~~~~v~~~~~~~-~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~  293 (456)
                      +...... ...+. .......++++| ++.|+.+ ..++.|..++...+........ .......++++|++
T Consensus       211 ~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG  281 (430)
T 3tc9_A          211 TRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSG  281 (430)
T ss_dssp             EGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTS
T ss_pred             eCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCC
Confidence            4322111 11121 123346678999 6655544 4678899999987664332222 22346678888873

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.21  E-value=0.0023  Score=63.27  Aligned_cols=230  Identities=11%  Similarity=-0.006  Sum_probs=136.4

Q ss_pred             CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCC---ccccccCcccceEEEEecc
Q 012799          128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKP---SGNPLSGHKKWITGISWEP  203 (456)
Q Consensus       128 ~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~  203 (456)
                      ....|+..++......... .....+..|+|.+.+..| ++-...+.|+.+++.....   ....+.........+++.+
T Consensus       402 n~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~  480 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  480 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             cccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence            4456888888765544333 355678899999855544 4555567899998875321   1112222334456777766


Q ss_pred             cccCCCC-CEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC-CeEEEEeC-C-CcEEEEECCCCeEEEEeec
Q 012799          204 VHLNAPC-RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQ-D-CTIKVWETTQGKLIRELKG  279 (456)
Q Consensus       204 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~  279 (456)
                           .+ +++++-...+.|.+.++........+.........|+++|. +.|+.+.. . +.|...++........+..
T Consensus       481 -----~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~  555 (791)
T 3m0c_C          481 -----IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  555 (791)
T ss_dssp             -----TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             -----cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC
Confidence                 34 45555566789999998765544444444456889999986 46665553 2 6798898875544444443


Q ss_pred             CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc-
Q 012799          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-  358 (456)
Q Consensus       280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-  358 (456)
                      .......|++.+..                                   +.++++-.....|..+++.... ....... 
T Consensus       556 ~l~~P~GLavD~~~-----------------------------------~~LYwaD~~~~~I~~~d~dG~~-~~~v~~~~  599 (791)
T 3m0c_C          556 NIQWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGN-RKTILEDE  599 (791)
T ss_dssp             SCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCS-CEEEEECT
T ss_pred             CCCCceEEEEecCC-----------------------------------CeEEEEeCCCCcEEEEecCCCc-eEEEecCC
Confidence            44567788887652                                   2334444556778888865433 2222221 


Q ss_pred             -ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          359 -HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       359 -~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                       .-.....|++.. ++++++-...+.|...+..+|+.+..+..
T Consensus       600 ~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~~  641 (791)
T 3m0c_C          600 KRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLAE  641 (791)
T ss_dssp             TTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             CccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence             122345666632 33444444567888888888877666653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.12  E-value=0.0013  Score=60.36  Aligned_cols=154  Identities=11%  Similarity=0.065  Sum_probs=86.5

Q ss_pred             cEEEEEECCC--CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC---Ce-EEEEeCCCCC
Q 012799          110 AVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GE-LQCWDPQTGK  183 (456)
Q Consensus       110 ~V~~~~~s~~--~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~-i~vwd~~~~~  183 (456)
                      ....++|+|+  ...|..+...+.|+.++..++.... +.........++++++|+++++....   .. +...+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4578999985  3344444433889999987665443 44455668999999999944443311   12 3333322111


Q ss_pred             CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-c-CcCccEEEEEeCCCC-eEEEEe-C
Q 012799          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-S-GHTLAVTCVKWGGDG-VIYTGS-Q  259 (456)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~~~v~~~~~~~~~-~l~~~~-~  259 (456)
                      .....+ ........+++.|.    ++..+++-..++.|+.+|..++.....+ . +....-..++++|++ .|+.+. .
T Consensus       219 ~~~~~~-~~~~~P~giavd~~----~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~  293 (433)
T 4hw6_A          219 TERLSL-CNARGAKTCAVHPQ----NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG  293 (433)
T ss_dssp             CCEEEE-EECSSBCCCEECTT----TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred             eccccc-cccCCCCEEEEeCC----CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence            100000 01122234455441    3444445556778999998866552222 1 112223469999998 465555 4


Q ss_pred             CCcEEEEECC
Q 012799          260 DCTIKVWETT  269 (456)
Q Consensus       260 dg~i~iwd~~  269 (456)
                      .+.|+.++..
T Consensus       294 ~~~I~~~~~d  303 (433)
T 4hw6_A          294 KHCIYRVDYN  303 (433)
T ss_dssp             TTEEEEEEBC
T ss_pred             CCEEEEEeCC
Confidence            6789888765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.11  E-value=0.00022  Score=69.78  Aligned_cols=114  Identities=19%  Similarity=0.240  Sum_probs=69.8

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------eEEEEeCCCCCCcccc--ccCcccceEEEEecccccCCCCCEEEEEeC-C
Q 012799          155 CIAWSA-DGKHLVSGSKAG-----------ELQCWDPQTGKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASK-D  219 (456)
Q Consensus       155 ~~~~~~-~~~~l~s~~~dg-----------~i~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-d  219 (456)
                      ..++.+ +++.++.|+.+.           .+.+||..+++.....  ...+.....++++..     ++..+++|+. +
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-----~g~lyv~GG~~~  264 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-----NGQIVVTGGNDA  264 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-----TSCEEEECSSST
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-----CCCEEEeCCCCC
Confidence            566777 888888887643           5889999887643211  111222233445545     7889999884 5


Q ss_pred             CcEEEEECCCCeEEEEecCcCc-cEEEEEeCCCC-eEEEEe-CC-----CcEEEEECCCCeE
Q 012799          220 GDARIWDVSLRKCVICLSGHTL-AVTCVKWGGDG-VIYTGS-QD-----CTIKVWETTQGKL  273 (456)
Q Consensus       220 g~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~-~d-----g~i~iwd~~~~~~  273 (456)
                      +.+.+||..+.+-...-..+.. .-.+++..+++ .++.|+ .+     ..+.+||..+++-
T Consensus       265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            5899999987754332211111 11234455566 666666 34     4689999987653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.06  E-value=0.0056  Score=60.53  Aligned_cols=165  Identities=8%  Similarity=-0.062  Sum_probs=102.9

Q ss_pred             ccCCcccEEEEEECCCCCeE-EEEECCCcEEEEeCCCC----cceeEEecCCCCEEEEEEcCCCCEEE-EEeCCCeEEEE
Q 012799          104 IAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQ----TPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCW  177 (456)
Q Consensus       104 l~~h~~~V~~~~~s~~~~~l-~~~~~d~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vw  177 (456)
                      +......+.+++|++....| ++-...+.|+.+++...    .....+.........|++.+.++.|+ +-...+.|.+.
T Consensus       419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~  498 (791)
T 3m0c_C          419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  498 (791)
T ss_dssp             EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence            33445667899999855544 44445678999988753    22333333455677899988665444 55567889999


Q ss_pred             eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (456)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l  254 (456)
                      ++..... .............|++.|     ....|+....  .+.|...++........+...-.....|++++.+ .|
T Consensus       499 ~ldG~~~-~~l~~~~l~~P~gIaVDp-----~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~L  572 (791)
T 3m0c_C          499 DTKGVKR-KTLFRENGSKPRAIVVDP-----VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL  572 (791)
T ss_dssp             ETTSSSE-EEEEECTTCCEEEEEEET-----TTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred             eCCCCeE-EEEEeCCCCCcceEEEec-----CCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeE
Confidence            9875432 222333344578888887     5445555543  2678888887554444444444678899999655 66


Q ss_pred             EEEe-CCCcEEEEECCCCeEE
Q 012799          255 YTGS-QDCTIKVWETTQGKLI  274 (456)
Q Consensus       255 ~~~~-~dg~i~iwd~~~~~~~  274 (456)
                      +.+. ..+.|..+++......
T Consensus       573 YwaD~~~~~I~~~d~dG~~~~  593 (791)
T 3m0c_C          573 YWVDSKLHSISSIDVNGGNRK  593 (791)
T ss_dssp             EEEETTTTEEEEEETTSCSCE
T ss_pred             EEEeCCCCcEEEEecCCCceE
Confidence            5554 4567999998654433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.06  E-value=3.6e-05  Score=75.42  Aligned_cols=230  Identities=11%  Similarity=0.002  Sum_probs=130.1

Q ss_pred             CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCC---CCccccccCcccceEEEEeccc
Q 012799          129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPV  204 (456)
Q Consensus       129 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~  204 (456)
                      .+.|+..++.+.+....+. ....+..++|.+.+..|+.+. ..+.|..+++...   ................+++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            4578888887655443333 334567899998766666554 4578999998751   1111122211223445666541


Q ss_pred             ccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC-C-CcEEEEECCCCeEEEEeecCC
Q 012799          205 HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ-D-CTIKVWETTQGKLIRELKGHG  281 (456)
Q Consensus       205 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~  281 (456)
                          .+.++++-...+.|.++++........+.........++++|.+ .|+.+.. . +.|..+++........+....
T Consensus       464 ----~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l  539 (699)
T 1n7d_A          464 ----HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI  539 (699)
T ss_dssp             ----SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSC
T ss_pred             ----CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCC
Confidence                34455555567889999987655444443333456778898854 5554443 2 678777765332211122222


Q ss_pred             cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc--cc
Q 012799          282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--GH  359 (456)
Q Consensus       282 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~  359 (456)
                      ...+.|+++++.                                   +.++++-...+.|..+++..... .....  ..
T Consensus       540 ~~PnGlavd~~~-----------------------------------~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~  583 (699)
T 1n7d_A          540 QWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGNR-KTILEDEKR  583 (699)
T ss_dssp             SSCCCEEECTTT-----------------------------------CCEEEEETTTTEEEEECSSSSCC-EEECCCSSS
T ss_pred             CCccEEEEeccC-----------------------------------CEEEEEecCCCeEEEEccCCCce-EEEEecCCc
Confidence            344567777652                                   33455666677899998754322 21111  11


Q ss_pred             cccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                      ......|++..+ .++++....+.|..++..+|+.+..+..
T Consensus       584 ~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          584 LAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             CSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred             CCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence            123345566443 4555556678999999888888777654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.05  E-value=0.0049  Score=59.42  Aligned_cols=165  Identities=10%  Similarity=0.007  Sum_probs=99.0

Q ss_pred             ccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCCc
Q 012799          109 EAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKPS  185 (456)
Q Consensus       109 ~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~  185 (456)
                      .....+++.+.+. ++++-...+.|.+.+++...........-.....|++.|.+.+|+....  .+.|...+++.....
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~  163 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF  163 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence            5688999998555 4445456789999998754433333345556789999997666655543  456777776543322


Q ss_pred             cccccCcccceEEEEecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEE
Q 012799          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK  264 (456)
Q Consensus       186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~  264 (456)
                       ......-.....+++.+     ++..|+.+ ...+.|...|+..........+.......+++..+..+++-...+.|.
T Consensus       164 -~l~~~~~~~P~Glald~-----~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~  237 (619)
T 3s94_A          164 -IIINSEIYWPNGLTLDY-----EEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSIL  237 (619)
T ss_dssp             -EEECSSCSSEEEEEEET-----TTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEE
T ss_pred             -EEEeCCCCCCcEEEEEc-----cCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEE
Confidence             12222334567888887     54555554 446778888886544332222122223456776663444445677899


Q ss_pred             EEECCCCeEEEEeec
Q 012799          265 VWETTQGKLIRELKG  279 (456)
Q Consensus       265 iwd~~~~~~~~~~~~  279 (456)
                      ..|..+++....+..
T Consensus       238 ~~d~~tg~~~~~i~~  252 (619)
T 3s94_A          238 ACNKYTGEGLREIHS  252 (619)
T ss_dssp             EEESSSCCCCEECCS
T ss_pred             EEECCCCcccEEEec
Confidence            999888776555543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.05  E-value=0.0053  Score=53.77  Aligned_cols=156  Identities=8%  Similarity=-0.063  Sum_probs=97.1

Q ss_pred             cEEEEEECCCCC-eEEEEECCCcEEEEeCCCCcce-eEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799          110 AVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       110 ~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~  186 (456)
                      .+.+++|++.+. ++.+-...+.|..++....... ..+...-.....+++.+. +++.++-...+.|.+++++......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            466899998544 4445456788999998765422 222323345678899874 4455555567889999987543221


Q ss_pred             ccccCcccceEEEEecccccCCCCCEEEEEe--CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE-eCCCc
Q 012799          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG-SQDCT  262 (456)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~  262 (456)
                       ...........+++.|     .+..++.+.  ..+.|...++............-.....+++++++ .|+.+ +..+.
T Consensus       116 -l~~~~~~~P~giavdp-----~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~  189 (318)
T 3sov_A          116 -LFWQELDQPRAIALDP-----SSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF  189 (318)
T ss_dssp             -EECSSCSSEEEEEEEG-----GGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             -EEeCCCCCccEEEEeC-----CCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCE
Confidence             2223344567888887     444555554  25778888876433222222333456899999855 55554 45678


Q ss_pred             EEEEECCCC
Q 012799          263 IKVWETTQG  271 (456)
Q Consensus       263 i~iwd~~~~  271 (456)
                      |..+|+...
T Consensus       190 I~~~d~dG~  198 (318)
T 3sov_A          190 IHKSNLDGT  198 (318)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEcCCCC
Confidence            999998643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.03  E-value=0.0067  Score=56.06  Aligned_cols=153  Identities=12%  Similarity=0.119  Sum_probs=91.0

Q ss_pred             cEEEEEECCC-C-CeEEEEECCCcEEEEeCCCCcceeEEec---CCCCEEEEEE-------cCCCCEEEEEeCCC-----
Q 012799          110 AVLSVAFSPD-G-RQLASGSGDTTVRLWDLNTQTPMFKCTG---HKNWVLCIAW-------SADGKHLVSGSKAG-----  172 (456)
Q Consensus       110 ~V~~~~~s~~-~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~s~~~dg-----  172 (456)
                      ....|+|+|. . +++++-...+.|++.|..++........   .......++|       +++++.|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983 4 4444444456789999887665544332   1235899999       99999777666554     


Q ss_pred             --eEEEEeCCC-CCCcc----ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC-------CCeE------
Q 012799          173 --ELQCWDPQT-GKPSG----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-------LRKC------  232 (456)
Q Consensus       173 --~i~vwd~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~------  232 (456)
                        .|.+++... +....    ..+.. ......++.+|.    ++.++++-..++.|..+|+.       ++..      
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~----~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPI----NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTT----TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCC----CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence              266665443 22210    01111 122345555551    34455556677889999987       4442      


Q ss_pred             --------EEEecCcCccEEEEEeCCCC-eEEEE-eCCCcEEEEEC
Q 012799          233 --------VICLSGHTLAVTCVKWGGDG-VIYTG-SQDCTIKVWET  268 (456)
Q Consensus       233 --------~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~i~iwd~  268 (456)
                              +... +.......++|+|++ .|+.+ +..+.|+.++.
T Consensus       295 ~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          295 NNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             GCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence                    2222 223446789999999 45555 45677888554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.97  E-value=0.014  Score=56.21  Aligned_cols=234  Identities=7%  Similarity=-0.053  Sum_probs=141.0

Q ss_pred             eEEEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799          122 QLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSGNPLSGHKKWITGI  199 (456)
Q Consensus       122 ~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  199 (456)
                      +|+.+ ....|+..++++......+. ..-..+..++|++.+..|+. -..++.|..++++...... ...........+
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-v~~~g~~~P~Gl   85 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-VVEFGLDYPEGM   85 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EECSSCSCCCEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-EEeCCCCCcceE
Confidence            44444 45679999998655433332 23356889999986665554 4557889999987543322 222222345667


Q ss_pred             EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC-CCeEEEEeC--CCcEEEEECCCCeEEEE
Q 012799          200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ--DCTIKVWETTQGKLIRE  276 (456)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~--dg~i~iwd~~~~~~~~~  276 (456)
                      ++.+.    .++.+++-...+.|.+.++........+...-.....++++| .|.|+....  .+.|...++........
T Consensus        86 AvD~~----~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l  161 (628)
T 4a0p_A           86 AVDWL----GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL  161 (628)
T ss_dssp             EEETT----TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             EEEeC----CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE
Confidence            76651    344555555678899999865443333333445678999998 456666553  56788888765433222


Q ss_pred             eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc
Q 012799          277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM  356 (456)
Q Consensus       277 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  356 (456)
                      + ........+++++..                                   +..+++-...+.|..+|+.....  ..+
T Consensus       162 ~-~~~~~P~GlalD~~~-----------------------------------~~LY~aD~~~~~I~~~d~dG~~~--~v~  203 (628)
T 4a0p_A          162 V-PNVGRANGLTIDYAK-----------------------------------RRLYWTDLDTNLIESSNMLGLNR--EVI  203 (628)
T ss_dssp             E-CSCSSEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCSC--EEE
T ss_pred             E-CCCCCcceEEEcccc-----------------------------------CEEEEEECCCCEEEEEcCCCCce--EEe
Confidence            2 234456778887752                                   23355556677888888755433  223


Q ss_pred             ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          357 TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       357 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                      ...-.....+++.. +.++++-...+.|...|..+|+....+..
T Consensus       204 ~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~  246 (628)
T 4a0p_A          204 ADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQG  246 (628)
T ss_dssp             EECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             eccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEec
Confidence            23333456777764 44445555578899999877766555543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.97  E-value=0.0074  Score=52.86  Aligned_cols=157  Identities=8%  Similarity=-0.083  Sum_probs=96.0

Q ss_pred             cccEEEEEECCCCCeEE-EEECCCcEEEEeCCC----CcceeEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC
Q 012799          108 TEAVLSVAFSPDGRQLA-SGSGDTTVRLWDLNT----QTPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQT  181 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~-~~~~d~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~  181 (456)
                      ...+.+++|++++..|+ +-..++.|..++...    ......+...-.....+++.+.+. +.++-...+.|.+.++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            34578999998665555 444568999999876    222222332334568899987554 445556678999999875


Q ss_pred             CCCccccccCcccceEEEEecccccCCCCCEEEEEeCC--CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD--GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (456)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~  258 (456)
                      .... ............+++.|     .+..++.+...  +.|...++............-.....+++++++ .|+.+.
T Consensus       109 ~~~~-~~~~~~~~~P~~iavdp-----~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D  182 (316)
T 1ijq_A          109 VKRK-TLFRENGSKPRAIVVDP-----VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD  182 (316)
T ss_dssp             SSEE-EEEECTTCCEEEEEEET-----TTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             CceE-EEEECCCCCcceEEeCC-----CCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEE
Confidence            4322 12222334567888887     55555555442  678888875433222222334567899999865 555554


Q ss_pred             -CCCcEEEEECCC
Q 012799          259 -QDCTIKVWETTQ  270 (456)
Q Consensus       259 -~dg~i~iwd~~~  270 (456)
                       ..+.|..+|+..
T Consensus       183 ~~~~~I~~~d~dg  195 (316)
T 1ijq_A          183 SKLHSISSIDVNG  195 (316)
T ss_dssp             TTTTEEEEEETTS
T ss_pred             CCCCeEEEEecCC
Confidence             567899999874

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.95  E-value=0.0039  Score=60.10  Aligned_cols=230  Identities=10%  Similarity=-0.017  Sum_probs=128.0

Q ss_pred             CCCcEEEEeCCCCc-ceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCccccccCcccceEEEEecccc
Q 012799          128 GDTTVRLWDLNTQT-PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH  205 (456)
Q Consensus       128 ~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  205 (456)
                      ....|+..++.... ........-..+..++|++.+..|+.+. ..+.|..++++..................+++.+  
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~--   93 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW--   93 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET--
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe--
Confidence            35678888887543 2222233455688999999766666554 4678999998765321112222224577888876  


Q ss_pred             cCCCCC-EEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC-CeEEEEeC--CCcEEEEECCCCeEEEEeecCC
Q 012799          206 LNAPCR-RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQ--DCTIKVWETTQGKLIRELKGHG  281 (456)
Q Consensus       206 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~  281 (456)
                         .+. .+++-...+.|.+.++........+...-.....++++|. |.|+.+..  .+.|...++.............
T Consensus        94 ---~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~  170 (619)
T 3s94_A           94 ---LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI  170 (619)
T ss_dssp             ---TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred             ---cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCC
Confidence               344 4445556788999998765433333334455678899885 46655553  3567777765433333332334


Q ss_pred             cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccc
Q 012799          282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ  361 (456)
Q Consensus       282 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  361 (456)
                      ...+.+++++..                                   +..+++-...+.|..+|+...... ....+...
T Consensus       171 ~~P~Glald~~~-----------------------------------~~LY~aD~~~~~I~~~~~dG~~~~-~~~~~~~~  214 (619)
T 3s94_A          171 YWPNGLTLDYEE-----------------------------------QKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLP  214 (619)
T ss_dssp             SSEEEEEEETTT-----------------------------------TEEEEEETTTCCEEEESSSCCEEC---------
T ss_pred             CCCcEEEEEccC-----------------------------------CEEEEEeCCCCeEEEecCCCCccE-EEEeCCCC
Confidence            456778887652                                   333555556678888886543221 11111122


Q ss_pred             cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       362 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  399 (456)
                      ....+++..+ .+.++-...+.|...|..+|+....+.
T Consensus       215 ~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~  251 (619)
T 3s94_A          215 HPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIH  251 (619)
T ss_dssp             -CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECC
T ss_pred             CceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEe
Confidence            3356777655 444555567789999988876555443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.94  E-value=0.0027  Score=55.35  Aligned_cols=196  Identities=15%  Similarity=0.244  Sum_probs=119.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCE--EEEE--eC--CCcEEEEECC--CCeE
Q 012799          161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR--FVSA--SK--DGDARIWDVS--LRKC  232 (456)
Q Consensus       161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--l~~~--~~--dg~i~iwd~~--~~~~  232 (456)
                      ...+++.....+-+.+||+ +|+.+.. +..  +.+..+..-|. +...+..  ++.+  -.  +++|.+|++.  ++ .
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~-~~~--g~~nnVD~r~~-~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~  112 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHS-YNT--GKLNNVDIRYD-FPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-T  112 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEE-ECC--SCEEEEEEEEE-EEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-C
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEE-ccC--CCcccEEEecc-cccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-c
Confidence            3456666677889999999 6776653 221  45666665551 1112222  3333  33  5789999773  33 3


Q ss_pred             EEEecC------cC-ccEEEEEe--CCC-C--eEEEEeCCCcEEEEECC-------CCeEEEEeecCCcceEEEEecCcc
Q 012799          233 VICLSG------HT-LAVTCVKW--GGD-G--VIYTGSQDCTIKVWETT-------QGKLIRELKGHGHWVNSLALSTEY  293 (456)
Q Consensus       233 ~~~~~~------~~-~~v~~~~~--~~~-~--~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~~~~~  293 (456)
                      +..+..      .. ..+..+++  ++. +  ++++...+|.+..|++.       +.+.++++... +.+..+...+. 
T Consensus       113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~-  190 (355)
T 3amr_A          113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDE-  190 (355)
T ss_dssp             EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETT-
T ss_pred             eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCC-
Confidence            444422      11 44556666  663 4  68888899999999882       33556666643 45666666655 


Q ss_pred             eeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC--C--Ccccc-ccc-cccEeEEE
Q 012799          294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK--Q--PKTRM-TGH-QQLVNHVY  367 (456)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~--~~~~~-~~~-~~~v~~~~  367 (456)
                                                         ...|+.+-++.-|..++.....  .  .+... .++ ...+..|+
T Consensus       191 -----------------------------------~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLa  235 (355)
T 3amr_A          191 -----------------------------------YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLT  235 (355)
T ss_dssp             -----------------------------------TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEE
T ss_pred             -----------------------------------CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEE
Confidence                                               4568888888777777744221  1  22222 122 23578887


Q ss_pred             E--CCCCC-EEEEEE-CCCcEEEEeCC-CCeEEEEEe
Q 012799          368 F--SPDGQ-WVASAS-FDKSIKLWNGT-TGKFVAVFR  399 (456)
Q Consensus       368 ~--sp~~~-~l~s~~-~dg~i~iwd~~-~~~~~~~~~  399 (456)
                      +  .++++ +|++++ .+++..+||.. +.+.+..|.
T Consensus       236 i~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          236 IYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            7  55655 655555 67799999996 677777775

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.92  E-value=0.0071  Score=52.78  Aligned_cols=162  Identities=11%  Similarity=0.163  Sum_probs=102.3

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC----CC---EEEEEeC---CCeEEEEeCC--CCCCccc
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD----GK---HLVSGSK---AGELQCWDPQ--TGKPSGN  187 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~s~~~---dg~i~vwd~~--~~~~~~~  187 (456)
                      ..+++.....+-+.+||+ +++.+..+..  +.++.+..-|+    |+   ++++...   +++|.+|++.  ++. +..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            345665667788999999 7888888753  56777777663    22   2333333   5789999663  433 211


Q ss_pred             ccc---C--cc-cceEEEEe--cccccCCCCC-EEEEEeCCCcEEEEECC-------CCeEEEEecCcCccEEEEEeCCC
Q 012799          188 PLS---G--HK-KWITGISW--EPVHLNAPCR-RFVSASKDGDARIWDVS-------LRKCVICLSGHTLAVTCVKWGGD  251 (456)
Q Consensus       188 ~~~---~--~~-~~v~~~~~--~~~~~~~~~~-~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~~  251 (456)
                      ...   .  .. ..+..+++  +|.    .+. ++++...+|.+..|++.       +.+.++++.. ...+..+..++.
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~----~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~  190 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQK----TGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE  190 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTT----TCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred             ccccccCcCCCCCCeeEEEEEecCC----CCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence            101   0  11 45666776  441    233 67788889999999882       3455666654 356777888875


Q ss_pred             C-eEEEEeCCCcEEEEECC-----CCeEEEEeec--CCcceEEEEec
Q 012799          252 G-VIYTGSQDCTIKVWETT-----QGKLIRELKG--HGHWVNSLALS  290 (456)
Q Consensus       252 ~-~l~~~~~dg~i~iwd~~-----~~~~~~~~~~--~~~~i~~~~~~  290 (456)
                      . .|+.+-.+.-|..++.+     +++.+..+..  ....+..+++-
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~  237 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIY  237 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEE
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEE
Confidence            5 99999999778888865     3455555421  22357777764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.89  E-value=0.0058  Score=52.82  Aligned_cols=154  Identities=6%  Similarity=0.053  Sum_probs=97.1

Q ss_pred             eEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCeEEEEecCc-------CccEEEEEe---CCCCeEEEEeC-----
Q 012799          196 ITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGH-------TLAVTCVKW---GGDGVIYTGSQ-----  259 (456)
Q Consensus       196 v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~l~~~~~-----  259 (456)
                      -.++.|++     ....|..++ ..+.|..||...+.........       ...+..+.|   .+++.|++...     
T Consensus        15 PE~~~wd~-----~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           15 PEDTIYDR-----TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             CSCEEEET-----TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             CcCccCcC-----CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            45677876     445666666 6899999999765433332211       124689999   68884444322     


Q ss_pred             ---------CCcEEEEECC---CCeEEEEeec-------------CCcceEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799          260 ---------DCTIKVWETT---QGKLIRELKG-------------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (456)
Q Consensus       260 ---------dg~i~iwd~~---~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (456)
                               +..|..||+.   +++.+.....             .......++..++                      
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~----------------------  147 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD----------------------  147 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT----------------------
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC----------------------
Confidence                     5779999999   7776654431             1124677777777                      


Q ss_pred             HHHHhhhhhccCCCCCEEEEEeCC-CcEEEEecCCCCCCcccc-----ccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799          315 KAALERYNKIKGNAPERLVSGSDD-FTMFLWEPAVSKQPKTRM-----TGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (456)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  388 (456)
                                    ++..++++.. +.|...+.... ......     .......+.|+++|+|+.|++....|.+..+|
T Consensus       148 --------------GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD  212 (334)
T 2p9w_A          148 --------------GNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD  212 (334)
T ss_dssp             --------------SCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred             --------------CCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence                          4446666666 66666653322 111100     11122367899999999888876799999999


Q ss_pred             CCC
Q 012799          389 GTT  391 (456)
Q Consensus       389 ~~~  391 (456)
                      +.+
T Consensus       213 ~~~  215 (334)
T 2p9w_A          213 VSK  215 (334)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            874

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.84  E-value=0.0021  Score=55.56  Aligned_cols=156  Identities=4%  Similarity=0.032  Sum_probs=103.6

Q ss_pred             cEEEEEECCCCCeEEEEE-CCCcEEEEeCCCCcceeEEecC-------CCCEEEEEE---cCCCCEEEEEe---------
Q 012799          110 AVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAW---SADGKHLVSGS---------  169 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~-~d~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~~l~s~~---------  169 (456)
                      --.+++|++....|..++ ..++|..|+...+.........       ...+..|.|   .|+++++++..         
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            334689988666666666 7899999998755433222211       114689999   68877777543         


Q ss_pred             ----CCCeEEEEeCC---CCCCcccc-ccC-----------cccceEEEEecccccCCCCCEEEEEeCC-CcEEEEECCC
Q 012799          170 ----KAGELQCWDPQ---TGKPSGNP-LSG-----------HKKWITGISWEPVHLNAPCRRFVSASKD-GDARIWDVSL  229 (456)
Q Consensus       170 ----~dg~i~vwd~~---~~~~~~~~-~~~-----------~~~~v~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~  229 (456)
                          .+..|..+|+.   +++..... +..           -......++..+     +|+..++++.. +.|...+...
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-----~GnaYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-----DGNSYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-----TSCEEEEEEESSCEEEEECTTS
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-----CCCEEEeCCCCCCeEEEEeCCC
Confidence                26779999998   77664321 111           112467888877     89999999888 8887777654


Q ss_pred             CeEEEEe-cC----cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCC
Q 012799          230 RKCVICL-SG----HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ  270 (456)
Q Consensus       230 ~~~~~~~-~~----~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~  270 (456)
                      .....-. ..    .....+.|+++|++ .|++....|.+..+|+.+
T Consensus       169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            4222111 11    12236689999999 777776699999999884

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.77  E-value=0.019  Score=51.14  Aligned_cols=104  Identities=13%  Similarity=0.211  Sum_probs=59.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc--c--cccCcccceEEEEecccccCCCCCEEEEEeC-C-----
Q 012799          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG--N--PLSGHKKWITGISWEPVHLNAPCRRFVSASK-D-----  219 (456)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-d-----  219 (456)
                      -.....++|.|+|++++ +..+|.|.+++  .++...  .  ...........++++|.- . .+..|.++.. .     
T Consensus        30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf-~-~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRF-P-QEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTT-T-TSCEEEEEEEECTTSSE
T ss_pred             CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCC-C-CCCEEEEEEecCCCCCc
Confidence            34578999999998544 56679999998  333210  0  111223567899999820 0 0344444433 2     


Q ss_pred             CcEEEEECCCC-----eEEE-Eec---CcCccEEEEEeCCCCeEEEEe
Q 012799          220 GDARIWDVSLR-----KCVI-CLS---GHTLAVTCVKWGGDGVIYTGS  258 (456)
Q Consensus       220 g~i~iwd~~~~-----~~~~-~~~---~~~~~v~~~~~~~~~~l~~~~  258 (456)
                      +.|..++....     +.+. .+.   ........++|.|+|.|+.+.
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            56888877643     1121 132   111233578999999555543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.76  E-value=0.02  Score=51.20  Aligned_cols=233  Identities=11%  Similarity=0.110  Sum_probs=144.4

Q ss_pred             CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCC
Q 012799          129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA  208 (456)
Q Consensus       129 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  208 (456)
                      +..|.|.|+.++....+-.   -..-+.-.+|..+.||.-. ..++.++|+++...+.....  ...|.-=.|-.     
T Consensus        47 ~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~--~e~VvfWkWis-----  115 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWIS-----  115 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC--SSCCCEEEEEE-----
T ss_pred             CCeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec--CCCceEEEecC-----
Confidence            3478899998765543321   1223456788888777665 67899999998776542221  23454445543     


Q ss_pred             CCCEEEEEeCCCcEEEEECCC-CeEEEEecCc----CccEEEEEeCCCC--eEEEEe------CCCcEEEEECCCCeEEE
Q 012799          209 PCRRFVSASKDGDARIWDVSL-RKCVICLSGH----TLAVTCVKWGGDG--VIYTGS------QDCTIKVWETTQGKLIR  275 (456)
Q Consensus       209 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~--~l~~~~------~dg~i~iwd~~~~~~~~  275 (456)
                       .+.|+..+. ..|+-|++.. ..+...+..|    ...|.....+++.  .+++|-      -.|.+.+|..+. +.-+
T Consensus       116 -~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ  192 (494)
T 1bpo_A          116 -LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQ  192 (494)
T ss_dssp             -TTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEE
T ss_pred             -CCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccc
Confidence             245555554 6799999964 3455555444    3567777778877  333332      246788999875 4556


Q ss_pred             EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC---CCcEEEEecCCC---
Q 012799          276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DFTMFLWEPAVS---  349 (456)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~---  349 (456)
                      .+.+|......+.+..+..                                 +...++.+..   .+.+.+.++...   
T Consensus       193 ~ieGhaa~F~~~~~~g~~~---------------------------------~~~lf~fa~r~~~g~kLhi~Ei~~~~~~  239 (494)
T 1bpo_A          193 PIEGHAASFAQFKMEGNAE---------------------------------ESTLFCFAVRGQAGGKLHIIEVGTPPTG  239 (494)
T ss_dssp             EECCSEEEEEEEECTTCSS---------------------------------EEEEEEEEECSTTCCEEEEEECSCCCTT
T ss_pred             hheeeeeeeEEEecCCCCC---------------------------------CceEEEEEEecCCCcEEEEEEcCCCccC
Confidence            6777777666555543210                                 0112333333   268888887543   


Q ss_pred             CCCcc-----cc---ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          350 KQPKT-----RM---TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       350 ~~~~~-----~~---~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      ..+..     ..   ..-.+-..++..|+.-..++.-+.-|.+++||+++|.++..-+-...+|..-
T Consensus       240 ~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t  306 (494)
T 1bpo_A          240 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT  306 (494)
T ss_dssp             CCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEe
Confidence            11110     01   1123445678888887888889999999999999999988776555665544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.69  E-value=0.0097  Score=53.11  Aligned_cols=147  Identities=17%  Similarity=0.196  Sum_probs=97.9

Q ss_pred             ECCCCCeEEEEECCCcEEEEeCCCCcceeEEecC----CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc----
Q 012799          116 FSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH----KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN----  187 (456)
Q Consensus       116 ~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----  187 (456)
                      ...+|..++.+- ++.||..++.....-+.+...    -..|..+..+|+|++||..+.. .|.|-.+..+.....    
T Consensus        28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHH
T ss_pred             EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCccccc
Confidence            344666666663 578888888755544454432    2367889999999999998654 788888774321110    


Q ss_pred             -------ccc------CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC--eEEEEec---------CcCccE
Q 012799          188 -------PLS------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLS---------GHTLAV  243 (456)
Q Consensus       188 -------~~~------~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~---------~~~~~v  243 (456)
                             .+.      ....+|..+.|+|...  .+..|++-..|+.|++||+...  ++. .++         .....|
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~--~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev  182 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSY--RDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI  182 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBG--GGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccC--CCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence                   000      1246799999999654  5689999999999999999752  222 222         222568


Q ss_pred             EEEEeCCCC-eEEEEe--CCCcEEEEE
Q 012799          244 TCVKWGGDG-VIYTGS--QDCTIKVWE  267 (456)
Q Consensus       244 ~~~~~~~~~-~l~~~~--~dg~i~iwd  267 (456)
                      .+++|.+++ .|++.+  ..|.|+-.-
T Consensus       183 ~S~~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          183 TDLEFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             EEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred             EEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence            889998877 555544  667766543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.67  E-value=0.035  Score=53.59  Aligned_cols=186  Identities=8%  Similarity=-0.140  Sum_probs=109.6

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEE-EEEeCCCcEEEEECCCCeEEEEecCcCcc
Q 012799          164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLA  242 (456)
Q Consensus       164 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  242 (456)
                      +|+.+ ..+.|+..++++...........-....+++|++     .+..+ ++-..++.|+.+++........+......
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~-----~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~   81 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDV-----TDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDY   81 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEET-----TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEEC-----CCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCC
Confidence            44444 4568999999865432212222234678899987     44444 45556788999988765433333332344


Q ss_pred             EEEEEeCCCC-eE-EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799          243 VTCVKWGGDG-VI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (456)
Q Consensus       243 v~~~~~~~~~-~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (456)
                      ...+++++.+ .| ++-...+.|.+.++........+.........+++.|..                           
T Consensus        82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~---------------------------  134 (628)
T 4a0p_A           82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE---------------------------  134 (628)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT---------------------------
T ss_pred             cceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC---------------------------
Confidence            6678887644 44 444556789999987543322232333456788888752                           


Q ss_pred             hhhccCCCCCEEEEE-eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEE-CCCcEEEEeCCCC
Q 012799          321 YNKIKGNAPERLVSG-SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTG  392 (456)
Q Consensus       321 ~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~  392 (456)
                              +..+++- +..+.|...++..... . .+...-.....++++++++.|+.+. ..+.|..+|+...
T Consensus       135 --------G~lY~tD~g~~~~I~r~~~dG~~~-~-~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          135 --------GFMYWTEWGGKPKIDRAAMDGSER-T-TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             --------TEEEEEECSSSCEEEEEETTSCSC-E-EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             --------CeEEEeCCCCCCEEEEEeCCCCce-E-EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence                    2223332 2245677776543322 1 1222345678999999777666654 4578999998654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.65  E-value=0.017  Score=53.46  Aligned_cols=136  Identities=10%  Similarity=0.037  Sum_probs=78.2

Q ss_pred             CEEEEEEcC-CCCEEEEEeC-CCeEEEEeCCCCCCccccccC--cccceEEEEe-------cccccCCCCCEEEEEeCCC
Q 012799          152 WVLCIAWSA-DGKHLVSGSK-AGELQCWDPQTGKPSGNPLSG--HKKWITGISW-------EPVHLNAPCRRFVSASKDG  220 (456)
Q Consensus       152 ~v~~~~~~~-~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~-------~~~~~~~~~~~l~~~~~dg  220 (456)
                      ....|+|.| ++..|+.+.. .+.|++.|++++........+  .......++|       ++     ++.+++++...+
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-----~G~~lyvad~~~  214 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-----EAEYMIVAIDYD  214 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-----TTCEEEEEECCC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-----CCCEEEEEeCCC
Confidence            467899998 3555555444 467999998876654311111  1234788888       77     888666666544


Q ss_pred             -------cEEEEECCC-CeEE-----EEecCcCccEEEEEeCCC-Ce-EEEEeCCCcEEEEECC-------CCeE-----
Q 012799          221 -------DARIWDVSL-RKCV-----ICLSGHTLAVTCVKWGGD-GV-IYTGSQDCTIKVWETT-------QGKL-----  273 (456)
Q Consensus       221 -------~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~~-l~~~~~dg~i~iwd~~-------~~~~-----  273 (456)
                             .|.+++... +...     ..+... .....++++|+ +. +++-..++.|..+|+.       ++..     
T Consensus       215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~  293 (496)
T 3kya_A          215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV  293 (496)
T ss_dssp             TTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred             CCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence                   266665333 1111     111111 22346778884 44 4455567789999987       4543     


Q ss_pred             ------EEE-ee-cCCcceEEEEecCcc
Q 012799          274 ------IRE-LK-GHGHWVNSLALSTEY  293 (456)
Q Consensus       274 ------~~~-~~-~~~~~i~~~~~~~~~  293 (456)
                            ... +. ........++++|++
T Consensus       294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G  321 (496)
T 3kya_A          294 KNNPNTFKQLFTIADPSWEFQIFIHPTG  321 (496)
T ss_dssp             GGCTTTEEEEEECSSSSCCEEEEECTTS
T ss_pred             cccccccceeEecCCCCCceEEEEcCCC
Confidence                  112 11 123445788888873

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.62  E-value=0.029  Score=49.90  Aligned_cols=72  Identities=13%  Similarity=0.009  Sum_probs=46.3

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-ceeEE---ecCCCCEEEEEEcCC---CCEEEEEeC----C----Ce
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-PMFKC---TGHKNWVLCIAWSAD---GKHLVSGSK----A----GE  173 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~l~s~~~----d----g~  173 (456)
                      .....++|.|+|+++++ ..+|.|++++. +++ .+..+   .........|+++|+   +..|+.+..    +    +.
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            45678999999985554 56799999973 444 22211   122456899999997   555554433    3    56


Q ss_pred             EEEEeCCCC
Q 012799          174 LQCWDPQTG  182 (456)
Q Consensus       174 i~vwd~~~~  182 (456)
                      |..|+...+
T Consensus       107 v~r~~~~~~  115 (354)
T 3a9g_A          107 VIRGRLDGS  115 (354)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEECCC
Confidence            777776644

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.61  E-value=0.0085  Score=52.00  Aligned_cols=145  Identities=17%  Similarity=0.243  Sum_probs=73.1

Q ss_pred             CCCeEEEEE-CC-----CcEEEEeCCCCccee--EEecCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCC--
Q 012799          119 DGRQLASGS-GD-----TTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKA-----GELQCWDPQTGK--  183 (456)
Q Consensus       119 ~~~~l~~~~-~d-----~~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~--  183 (456)
                      ++.+++.|+ .+     ..+.+||..+.+-..  .+.........+.  .++..++.|+.+     ..+.+||+.+++  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            345566665 22     368888887654211  1111111112222  256777777765     358999988776  


Q ss_pred             -Cccc-cccCcccceEEEEecccccCCCCCEEEEEeCC-----CcEEEEECCCCeEEE--EecCcCccEEEEEeCCCC-e
Q 012799          184 -PSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDG-V  253 (456)
Q Consensus       184 -~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~  253 (456)
                       -... .+.........+..       ++..++.|+.+     ..+.+||+.+.+-..  .+........++.+  ++ .
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i  162 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL-------GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVI  162 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE-------TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEE
T ss_pred             eeEECCCCCCCccceeEEEE-------CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEE
Confidence             2211 11111111112221       45677777654     358899987765332  22211122222222  44 5


Q ss_pred             EEEEeCC-----CcEEEEECCCCeEE
Q 012799          254 IYTGSQD-----CTIKVWETTQGKLI  274 (456)
Q Consensus       254 l~~~~~d-----g~i~iwd~~~~~~~  274 (456)
                      ++.|+.+     ..+.+||+.+.+-.
T Consensus       163 yv~GG~~~~~~~~~~~~~d~~~~~W~  188 (301)
T 2vpj_A          163 YCLGGYDGLNILNSVEKYDPHTGHWT  188 (301)
T ss_dssp             EEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             EEECCCCCCcccceEEEEeCCCCcEE
Confidence            5556544     45888998876543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.60  E-value=0.007  Score=53.88  Aligned_cols=101  Identities=15%  Similarity=0.134  Sum_probs=59.4

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcc--eeEEe---cCCCCEEEEEEcCC---CCEEEEEeC-C-----CeE
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKCT---GHKNWVLCIAWSAD---GKHLVSGSK-A-----GEL  174 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~s~~~-d-----g~i  174 (456)
                      ..-..++|.|+|+++++ ..+|.|++++  .++.  +..+.   ........|+|+|+   +..|+.+.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            34678999999985554 5679999998  3332  11111   22457899999998   555554433 2     568


Q ss_pred             EEEeCCCCCC-----cccccc---CcccceEEEEecccccCCCCCEEEEEe
Q 012799          175 QCWDPQTGKP-----SGNPLS---GHKKWITGISWEPVHLNAPCRRFVSAS  217 (456)
Q Consensus       175 ~vwd~~~~~~-----~~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~~~~  217 (456)
                      ..++...+..     +...+.   ........++|.|     +|.++++.+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-----dG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-----DGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-----TSCEEEECC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-----CCCEEEEEC
Confidence            8888764321     110011   1111235678877     886666643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.53  E-value=0.043  Score=48.76  Aligned_cols=106  Identities=16%  Similarity=0.186  Sum_probs=58.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-Cccc--cccCcccceEEEEecccccCCCCCEEEEEeC---C----
Q 012799          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGN--PLSGHKKWITGISWEPVHLNAPCRRFVSASK---D----  219 (456)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~---d----  219 (456)
                      -.....++|.|+|+ |+++..+|.|.+++. +++ .+..  ...........++++|. +..++..+++-+.   +    
T Consensus        28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pd-f~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPE-FPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTT-TTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCC-CCcCCEEEEEEeccCCCCCcc
Confidence            34578999999997 555566799999973 443 1110  01122345788999882 1112334443332   3    


Q ss_pred             CcEEEEECCCC-------eEE-EEec-CcCccEEEEEeCCCCeEEEEe
Q 012799          220 GDARIWDVSLR-------KCV-ICLS-GHTLAVTCVKWGGDGVIYTGS  258 (456)
Q Consensus       220 g~i~iwd~~~~-------~~~-~~~~-~~~~~v~~~~~~~~~~l~~~~  258 (456)
                      +.|..|+....       +.+ ..+. ........++|.|+|.|+.+.
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            56777776543       111 1122 111224578999999555543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.52  E-value=0.015  Score=51.36  Aligned_cols=188  Identities=12%  Similarity=0.118  Sum_probs=102.0

Q ss_pred             CCCeEEEEeCCCC--CCccccccC-----cccceEEEEecccccCCCCC-EEEEE-eC--CCcEEEEECCCC--e--EEE
Q 012799          170 KAGELQCWDPQTG--KPSGNPLSG-----HKKWITGISWEPVHLNAPCR-RFVSA-SK--DGDARIWDVSLR--K--CVI  234 (456)
Q Consensus       170 ~dg~i~vwd~~~~--~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~-~l~~~-~~--dg~i~iwd~~~~--~--~~~  234 (456)
                      .+|.|.++|.++.  +.......+     ..-....+.+.+.   .++. +|+++ ..  +..|.+|++...  .  .+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d---~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~  157 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID---DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK  157 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC---TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC---CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe
Confidence            6889999998743  221111111     1224455555442   1333 34333 32  467778776542  2  233


Q ss_pred             EecCc-CccEEEEEeCCCCeEEEEeC------------------CCcEEEEECCCCeEEEEeecCCcceEEEEecCccee
Q 012799          235 CLSGH-TLAVTCVKWGGDGVIYTGSQ------------------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (456)
Q Consensus       235 ~~~~~-~~~v~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  295 (456)
                      .+.+. -...+.+.+.++|.++++..                  .|.|..+|..  +. ..+...-..-+.++++|++. 
T Consensus       158 ~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~-  233 (355)
T 3sre_A          158 TIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-RVVAEGFDFANGINISPDGK-  233 (355)
T ss_dssp             EECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-EEEEEEESSEEEEEECTTSS-
T ss_pred             ccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-EEeecCCcccCcceECCCCC-
Confidence            33322 24578999999996555543                  2456556553  22 22222234467899998842 


Q ss_pred             eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCc--cccccccccEeEEEECC-CC
Q 012799          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK--TRMTGHQQLVNHVYFSP-DG  372 (456)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~sp-~~  372 (456)
                                                        ..+++-+..+.|..|++.......  ..+ ......-.+++.+ +|
T Consensus       234 ----------------------------------~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G  278 (355)
T 3sre_A          234 ----------------------------------YVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG  278 (355)
T ss_dssp             ----------------------------------EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC
T ss_pred             ----------------------------------EEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC
Confidence                                              224455567899999976433221  112 2245677899999 59


Q ss_pred             CEEEEEECC-CcEEEEeCC--CCeEEEEEe
Q 012799          373 QWVASASFD-KSIKLWNGT--TGKFVAVFR  399 (456)
Q Consensus       373 ~~l~s~~~d-g~i~iwd~~--~~~~~~~~~  399 (456)
                      ++.+++..+ +.|..|+..  .+..+..++
T Consensus       279 ~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          279 DLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             CEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             cEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            987766644 355555543  255555554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.48  E-value=0.00042  Score=67.90  Aligned_cols=156  Identities=8%  Similarity=-0.076  Sum_probs=89.3

Q ss_pred             ccEEEEEECCCCCeEEEEE-CCCcEEEEeCCC----CcceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCC
Q 012799          109 EAVLSVAFSPDGRQLASGS-GDTTVRLWDLNT----QTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTG  182 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~-~d~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~  182 (456)
                      ..+..++|++.+..|+.+. ..+.|+.+++.+    ......+.........|++.+. ++++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            3566889998766665553 567899999875    2222222222234566888754 444455455678999998754


Q ss_pred             CCccccccCcccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEE-Ee
Q 012799          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT-GS  258 (456)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~-~~  258 (456)
                      .... ...........+++.|     .+..|+.+..  .+.|..+++........+...-.....|++++++ .|+. -+
T Consensus       486 ~~~~-l~~~~~~~P~giavDp-----~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~  559 (699)
T 1n7d_A          486 KRKT-LFREQGSKPRAIVVDP-----VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  559 (699)
T ss_dssp             CEEE-ECCCSSCCCCCEECCS-----SSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred             ceEE-EEeCCCCCcceEEEcc-----CCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence            3221 2222223456677776     4444444432  2678877765433222222223445678999865 4444 44


Q ss_pred             CCCcEEEEECCC
Q 012799          259 QDCTIKVWETTQ  270 (456)
Q Consensus       259 ~dg~i~iwd~~~  270 (456)
                      ..+.|..+|+..
T Consensus       560 ~~~~I~~~d~dG  571 (699)
T 1n7d_A          560 KLHSISSIDVNG  571 (699)
T ss_dssp             TTTEEEEECSSS
T ss_pred             CCCeEEEEccCC
Confidence            567899998864

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.43  E-value=0.1  Score=54.18  Aligned_cols=226  Identities=13%  Similarity=0.055  Sum_probs=125.8

Q ss_pred             EEEEECCCcEEEEeCCCCcce--eEEecCCCCEEEEEEcCCCCEEEEEeCC-----------------------------
Q 012799          123 LASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSKA-----------------------------  171 (456)
Q Consensus       123 l~~~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----------------------------  171 (456)
                      ++.. .++.++|..+++.+..  .++. -...+..++++|+.+.++.+..+                             
T Consensus       709 ~v~~-~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  786 (1158)
T 3ei3_A          709 LALA-NNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS  786 (1158)
T ss_dssp             EEEE-CSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred             EEEE-cCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccc
Confidence            4433 3456888887643322  2222 34567888888877665544311                             


Q ss_pred             --------------------CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEe----------CCCc
Q 012799          172 --------------------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----------KDGD  221 (456)
Q Consensus       172 --------------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~----------~dg~  221 (456)
                                          +.|++.|..+.+.+..........+.+++..... +....++++|+          ..|.
T Consensus       787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~-~~~~~~lvVGTa~~~~~e~~~~~Gr  865 (1158)
T 3ei3_A          787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLG-KDPNTYFIVGTAMVYPEEAEPKQGR  865 (1158)
T ss_dssp             CCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCT-TCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred             ccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEc-cCCCEEEEEEeeecCCCCCCCCceE
Confidence                                2356666655554332222333445555543322 11346888876          3578


Q ss_pred             EEEEECCCCeEEEEe-cCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEE-eecCCcceEEEEecCcceeeecc
Q 012799          222 ARIWDVSLRKCVICL-SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGA  299 (456)
Q Consensus       222 i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~  299 (456)
                      |++|++..++..... ....+++++++--. |+|++|- ...|++|++...+.++. ..... .+..+.....       
T Consensus       866 i~vf~v~~~kL~lv~~~~v~g~v~al~~~~-g~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~-------  935 (1158)
T 3ei3_A          866 IVVFQYSDGKLQTVAEKEVKGAVYSMVEFN-GKLLASI-NSTVRLYEWTTEKELRTECNHYN-NIMALYLKTK-------  935 (1158)
T ss_dssp             EEEEEEETTEEEEEEEEEESSCEEEEEEET-TEEEEEE-TTEEEEEEECTTSCEEEEEEECC-CSCEEEEEEE-------
T ss_pred             EEEEEEECCEEEEEEEEEcCCcCEEEeeeC-CEEEEEc-CCEEEEEECCCCceEEEEeeccc-cEEEEEEecc-------
Confidence            999998755432222 23467888888553 4666554 47899999987654431 11011 1111111111       


Q ss_pred             ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc--ccccccEeEEEECCCCCEEEE
Q 012799          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVAS  377 (456)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s  377 (456)
                                                   +++++.|..-..+.++..+........+  ..+..+++++.+-.+ ..++.
T Consensus       936 -----------------------------~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~  985 (1158)
T 3ei3_A          936 -----------------------------GDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLG  985 (1158)
T ss_dssp             -----------------------------TTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEE
T ss_pred             -----------------------------CCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEE
Confidence                                         4568888877777765543322222222  234567888888644 46777


Q ss_pred             EECCCcEEEEeCCC
Q 012799          378 ASFDKSIKLWNGTT  391 (456)
Q Consensus       378 ~~~dg~i~iwd~~~  391 (456)
                      +..+|.+.+.....
T Consensus       986 aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          986 AENAFNLFVCQKDS  999 (1158)
T ss_dssp             EETTSEEEEEEECT
T ss_pred             EcCCCcEEEEecCC
Confidence            89999999986543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.42  E-value=0.013  Score=50.82  Aligned_cols=143  Identities=11%  Similarity=0.160  Sum_probs=69.4

Q ss_pred             CCeEEEEECC----CcEEEEeCCCCcceeE--EecCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCCCcccc
Q 012799          120 GRQLASGSGD----TTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGKHLVSGSKAG-----ELQCWDPQTGKPSGNP  188 (456)
Q Consensus       120 ~~~l~~~~~d----~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~  188 (456)
                      +.+++.|+.+    ..+..||..+.+-...  +......-..+.+  ++..++.|+.++     .+.+||..+++-....
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            3445555532    3578888876542111  1111111122222  666777777543     5888998776422111


Q ss_pred             -ccCcccceEEEEecccccCCCCCEEEEEeCCC-----cEEEEECCCCeEEEEe--cCcCccEEEEEeCCCC-eEEEEeC
Q 012799          189 -LSGHKKWITGISWEPVHLNAPCRRFVSASKDG-----DARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIYTGSQ  259 (456)
Q Consensus       189 -~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~  259 (456)
                       +.........+.+       ++..++.|+.++     .+.+||+.+.+-...-  ........++.+  ++ .++.|+.
T Consensus        94 ~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  164 (302)
T 2xn4_A           94 NMRDRRSTLGAAVL-------NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGY  164 (302)
T ss_dssp             CCSSCCBSCEEEEE-------TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCE
T ss_pred             CCCccccceEEEEE-------CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCC
Confidence             1111111112222       556777787654     5788888776543321  111111122222  34 4455543


Q ss_pred             C-------CcEEEEECCCCeE
Q 012799          260 D-------CTIKVWETTQGKL  273 (456)
Q Consensus       260 d-------g~i~iwd~~~~~~  273 (456)
                      +       ..+.+||+.+.+-
T Consensus       165 ~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          165 DVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             ETTTTEECCCEEEEETTTTEE
T ss_pred             CCCCCccccEEEEEeCCCCcE
Confidence            2       3588899887654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.35  E-value=0.049  Score=47.28  Aligned_cols=142  Identities=10%  Similarity=0.116  Sum_probs=72.0

Q ss_pred             CeEEEEEC--CCcEEEEeCCCCccee--EEecCCCCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCCCccc-cccC
Q 012799          121 RQLASGSG--DTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCWDPQTGKPSGN-PLSG  191 (456)
Q Consensus       121 ~~l~~~~~--d~~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~-~~~~  191 (456)
                      .+++.|+.  ...+.+||..+++-..  .+......-..+.+  ++..++.|+.+    ..+.+||+.+++-... .+..
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            35555654  3578889987754221  11111112222222  66677777755    5688999887653211 0111


Q ss_pred             cccceEEEEecccccCCCCCEEEEEeCC------CcEEEEECCCCeEEEEe--cCcCccEEEEEeCCCC-eEEEEeC---
Q 012799          192 HKKWITGISWEPVHLNAPCRRFVSASKD------GDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIYTGSQ---  259 (456)
Q Consensus       192 ~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~---  259 (456)
                      .......+.+       ++..++.|+.+      ..+.+||..+.+-...-  ........++.+  ++ .++.|+.   
T Consensus        91 ~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~  161 (306)
T 3ii7_A           91 PRDSLAACAA-------EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGN  161 (306)
T ss_dssp             CCBSCEEEEE-------TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESC
T ss_pred             cccceeEEEE-------CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCC
Confidence            1111112222       55677777765      46899998877543321  111111122222  44 4444443   


Q ss_pred             ------CCcEEEEECCCCeE
Q 012799          260 ------DCTIKVWETTQGKL  273 (456)
Q Consensus       260 ------dg~i~iwd~~~~~~  273 (456)
                            -..+.+||+.+.+-
T Consensus       162 ~~~~~~~~~~~~yd~~~~~W  181 (306)
T 3ii7_A          162 NVSGRVLNSCEVYDPATETW  181 (306)
T ss_dssp             TTTCEECCCEEEEETTTTEE
T ss_pred             CCcccccceEEEeCCCCCeE
Confidence                  34588899887653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.003  Score=55.25  Aligned_cols=115  Identities=17%  Similarity=0.142  Sum_probs=71.9

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEEEecC---
Q 012799          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSG---  238 (456)
Q Consensus       163 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~---  238 (456)
                      ..++.++.||.|.-.|.++|+...........++....- +. ...++..++.. +.||.+..++..++.....+..   
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~-~~-~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQE-PS-RLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCC-SC-TTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecC-Cc-cccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            478889999999999999998765332221122222111 10 01123334343 6899999999988865544321   


Q ss_pred             -cCccEEE---EEe------CCCCeEEEEeCCCcEEEEECCCCeEEEEeec
Q 012799          239 -HTLAVTC---VKW------GGDGVIYTGSQDCTIKVWETTQGKLIRELKG  279 (456)
Q Consensus       239 -~~~~v~~---~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  279 (456)
                       ...++..   ...      +.++.+++|+.+|.+...|+++|+.+..+..
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence             1122221   001      1455899999999999999999999998864

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.19  E-value=0.22  Score=49.52  Aligned_cols=233  Identities=14%  Similarity=0.176  Sum_probs=133.7

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE-ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  186 (456)
                      ...|.+|.-..+|. |-.|+.+| +..||-.+.+..... ......|.++....++ .|..|+.+| +..||..+.+...
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~   96 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ   96 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence            56799999998886 44566776 666774321111000 1123568888777665 567777665 7889987754322


Q ss_pred             ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec----CcCccEEEEEeCCCCeEEEEeCCCc
Q 012799          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGGDGVIYTGSQDCT  262 (456)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~l~~~~~dg~  262 (456)
                       ........|.++.. .     ++ .+..++.+ .+..+|..+++......    .....|.++....++.+..++.+| 
T Consensus        97 -~~~~~~~~i~~i~~-~-----~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~G-  166 (758)
T 3ott_A           97 -PETDFPTDVRTMAL-Q-----GD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNG-  166 (758)
T ss_dssp             -CSCCCCSCEEEEEE-E-----TT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTE-
T ss_pred             -cccCCCceEEEEEe-c-----CC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCC-
Confidence             11112234555542 1     33 56667765 68888987665433211    123568888888888777777654 


Q ss_pred             EEEEECCCCeEEEEeecC-----CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799          263 IKVWETTQGKLIRELKGH-----GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (456)
Q Consensus       263 i~iwd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (456)
                      +..+|..+++........     ...|.++....+                                    +..|..|+.
T Consensus       167 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~------------------------------------~~~lWigt~  210 (758)
T 3ott_A          167 LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTT------------------------------------RQCVWIGTE  210 (758)
T ss_dssp             EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETT------------------------------------TTEEEEEEE
T ss_pred             HhhCccCCCceEEecCCCccccccceeEEEEEECC------------------------------------CCEEEEEEC
Confidence            778888776543211110     112555554432                                    333555664


Q ss_pred             CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF  394 (456)
Q Consensus       338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~  394 (456)
                       +-+..+|..... ...........|.++....+|.+.+ |+.+ -+.+++..+++.
T Consensus       211 -~Gl~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~  263 (758)
T 3ott_A          211 -GYLFQYFPSTGQ-IKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPL  263 (758)
T ss_dssp             -EEEEEEETTTTE-EEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCC
T ss_pred             -CCCeEEcCCCCe-EEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcE
Confidence             457888854432 1111111234588888888887654 4444 588888776543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.19  E-value=0.11  Score=46.09  Aligned_cols=108  Identities=14%  Similarity=0.207  Sum_probs=57.4

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--ccc---cccCcccceEEEEecccccCCCCCEEEEE-eC------
Q 012799          151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGN---PLSGHKKWITGISWEPVHLNAPCRRFVSA-SK------  218 (456)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~------  218 (456)
                      .....|+|.|+|+.|+++...|.|++++......  +..   ...........++++|.- .. +..|..+ +.      
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf-~~-~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDF-AQ-SRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTH-HH-HCEEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCC-CC-CCEEEEEEeCCCCCCC
Confidence            4578999999998455556789999998542211  110   111223456889998820 00 3344433 22      


Q ss_pred             -CCcEEEEECCCC-------eEEE-EecC---cCccEEEEEeCCCCeEEEEeCC
Q 012799          219 -DGDARIWDVSLR-------KCVI-CLSG---HTLAVTCVKWGGDGVIYTGSQD  260 (456)
Q Consensus       219 -dg~i~iwd~~~~-------~~~~-~~~~---~~~~v~~~~~~~~~~l~~~~~d  260 (456)
                       ...|..|+....       +.+. .+..   .......++|.|+|.|+.+..|
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence             235666665432       1111 1111   1122357999999966555433

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.15  E-value=0.011  Score=47.57  Aligned_cols=142  Identities=8%  Similarity=-0.022  Sum_probs=79.5

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCC--------EEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW--------VLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~s~~~dg~i~vwd~~  180 (456)
                      ..+..++|+|+|.+.+.  .+|.++-.+..+..... +.+....        -.++.|.|+|.+.++  .||.|.-++..
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~-W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDN-WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC-HHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCccc-ccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            46779999999997776  66776666654422111 0011112        478999999988777  56998878764


Q ss_pred             CCCCccccccC------cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe-------EEEEecCcCccEEEEE
Q 012799          181 TGKPSGNPLSG------HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-------CVICLSGHTLAVTCVK  247 (456)
Q Consensus       181 ~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~  247 (456)
                      +.........+      -=..+..+.+.|     +|.+.++.  |+.++-....+..       ........-...+-+.
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-----~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~  188 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHP-----NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF  188 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECT-----TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECC-----CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence            33221111111      114678888888     77776666  7775433322111       0011112223344566


Q ss_pred             eCCCCeEEEEeCCCcE
Q 012799          248 WGGDGVIYTGSQDCTI  263 (456)
Q Consensus       248 ~~~~~~l~~~~~dg~i  263 (456)
                      |.+++.|.... +|.+
T Consensus       189 f~~~G~l~~v~-~g~~  203 (236)
T 1tl2_A          189 FSSVGTLFGVQ-GGKF  203 (236)
T ss_dssp             ECTTSCEEEEE-TTEE
T ss_pred             ECCCCcEEEEe-CCeE
Confidence            77777555555 5633

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.10  E-value=0.035  Score=48.08  Aligned_cols=104  Identities=15%  Similarity=0.248  Sum_probs=52.3

Q ss_pred             CCCEEEEEe-CC-----CeEEEEeCCCCCCcccc-ccCcccceEEEEecccccCCCCCEEEEEeCC-----CcEEEEECC
Q 012799          161 DGKHLVSGS-KA-----GELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVS  228 (456)
Q Consensus       161 ~~~~l~s~~-~d-----g~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  228 (456)
                      ++..++.|+ .+     ..+.+||+.+++-.... +.........+..       ++..++.|+.+     ..+.+||..
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-------~~~l~v~GG~~~~~~~~~~~~~d~~   86 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-------HDRIYVIGGYDGRSRLSSVECLDYT   86 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-------TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-------CCEEEEEcCCCCCccCceEEEEECC
Confidence            445556665 22     35888888776522111 1111111112221       55677777765     468999987


Q ss_pred             CCe-----EEEEecCcCccEEEEEeCCCC-eEEEEeCC-----CcEEEEECCCCeE
Q 012799          229 LRK-----CVICLSGHTLAVTCVKWGGDG-VIYTGSQD-----CTIKVWETTQGKL  273 (456)
Q Consensus       229 ~~~-----~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-----g~i~iwd~~~~~~  273 (456)
                      +.+     .+..+.........+.+  ++ .++.|+.+     ..+.+||+.+.+-
T Consensus        87 ~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W  140 (301)
T 2vpj_A           87 ADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW  140 (301)
T ss_dssp             CCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence            754     22222211122222223  34 55555543     3588889887653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.03  E-value=0.084  Score=45.98  Aligned_cols=141  Identities=11%  Similarity=0.020  Sum_probs=69.9

Q ss_pred             EEEEECCCcEEEEeCCCCccee-EEecCCCCEEEEEEcCCCCEEEEEeC----C-------CeEEEEeCCCCCCccc-cc
Q 012799          123 LASGSGDTTVRLWDLNTQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSK----A-------GELQCWDPQTGKPSGN-PL  189 (456)
Q Consensus       123 l~~~~~d~~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~----d-------g~i~vwd~~~~~~~~~-~~  189 (456)
                      ++.|+  ..+.+||..+++-.. .+..............+++.++.|+.    +       ..+..||..+++-... .+
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   85 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL   85 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence            44454  468999988765322 11111122233333457788888874    1       1277888877653211 11


Q ss_pred             cCcccceEEEEecccccCCCCCEEEEEeCC--------CcEEEEECCCCeEEEE--ecCcCccEEEEEeCCCCeEEEEeC
Q 012799          190 SGHKKWITGISWEPVHLNAPCRRFVSASKD--------GDARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGVIYTGSQ  259 (456)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~  259 (456)
                      ......-..+.+       ++..++.|+.+        ..+.+||..+.+-...  +........++ ...+..++.|+.
T Consensus        86 p~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~  157 (315)
T 4asc_A           86 PSPRCLFGLGEA-------LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL-SHMDLVYVIGGK  157 (315)
T ss_dssp             SSCEESCEEEEE-------TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCB
T ss_pred             CcchhceeEEEE-------CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE-EECCEEEEEeCC
Confidence            111111111221       45677777742        4589999987653221  11111111222 222225555655


Q ss_pred             -C-----CcEEEEECCCCeE
Q 012799          260 -D-----CTIKVWETTQGKL  273 (456)
Q Consensus       260 -d-----g~i~iwd~~~~~~  273 (456)
                       +     ..+.+||..+.+-
T Consensus       158 ~~~~~~~~~~~~yd~~~~~W  177 (315)
T 4asc_A          158 GSDRKCLNKMCVYDPKKFEW  177 (315)
T ss_dssp             CTTSCBCCCEEEEETTTTEE
T ss_pred             CCCCcccceEEEEeCCCCeE
Confidence             2     4688899887653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.03  E-value=0.058  Score=46.88  Aligned_cols=144  Identities=10%  Similarity=0.108  Sum_probs=71.7

Q ss_pred             CCCeEEEEECC----CcEEEEeCCCCcceeE--EecCCCCEEEEEEcCCCCEEEEEeC----C-----CeEEEEeCCCCC
Q 012799          119 DGRQLASGSGD----TTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGKHLVSGSK----A-----GELQCWDPQTGK  183 (456)
Q Consensus       119 ~~~~l~~~~~d----~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~----d-----g~i~vwd~~~~~  183 (456)
                      ++.+++.|+.+    ..+.+||..+.+-...  +......-..+.+  ++.+++.|+.    +     ..+.+||+.+++
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            45666666632    3688888876542211  1111111122222  6667777765    2     358889987764


Q ss_pred             Cccc-cccCcccceEEEEecccccCCCCCEEEEEeCC-----CcEEEEECCCCeEEEE--ecCcCccEEEEEeCCCC-eE
Q 012799          184 PSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDG-VI  254 (456)
Q Consensus       184 ~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l  254 (456)
                      -... .+.........+.+       ++..++.|+.+     ..+.+||..+.+-...  +........++.+  ++ .+
T Consensus       102 W~~~~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy  172 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI-------DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLY  172 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE-------TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEE
T ss_pred             EeECCCCCcCccccEEEEE-------CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEE
Confidence            2211 11111111112222       55677777643     3688899887653322  1111111222223  34 55


Q ss_pred             EEEeCC-----CcEEEEECCCCeE
Q 012799          255 YTGSQD-----CTIKVWETTQGKL  273 (456)
Q Consensus       255 ~~~~~d-----g~i~iwd~~~~~~  273 (456)
                      +.|+.+     ..+.+||+.+.+-
T Consensus       173 v~GG~~~~~~~~~~~~yd~~~~~W  196 (308)
T 1zgk_A          173 AVGGFDGTNRLNSAECYYPERNEW  196 (308)
T ss_dssp             EECCBCSSCBCCCEEEEETTTTEE
T ss_pred             EEeCCCCCCcCceEEEEeCCCCeE
Confidence            556544     4588899887653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.99  E-value=0.085  Score=54.69  Aligned_cols=231  Identities=11%  Similarity=0.107  Sum_probs=131.3

Q ss_pred             CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCC
Q 012799          129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA  208 (456)
Q Consensus       129 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  208 (456)
                      ...|.|.|+.++..+.+   ..-..-+.-.+|..+.||.-. ..++.|+|+++...+....  ....|.-=.|-.     
T Consensus        47 ~~~vvIidl~~~~~~~r---rpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis-----  115 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIR---RPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWIS-----  115 (1630)
T ss_pred             CceEEEEECCCCCCccc---ccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecC-----
Confidence            34788889887654422   112223455678777777654 6789999999877654222  223454445543     


Q ss_pred             CCCEEEEEeCCCcEEEEECCC-CeEEEEecCc----CccEEEEEeCCCC--eEEEEe------CCCcEEEEECCCCeEEE
Q 012799          209 PCRRFVSASKDGDARIWDVSL-RKCVICLSGH----TLAVTCVKWGGDG--VIYTGS------QDCTIKVWETTQGKLIR  275 (456)
Q Consensus       209 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~--~l~~~~------~dg~i~iwd~~~~~~~~  275 (456)
                       .+.++..+. ..|+-|++.. ..+...+..|    ...|..-..+++.  .+++|-      ..|.+.+|..+.+ ..+
T Consensus       116 -~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ  192 (1630)
T 1xi4_A          116 -LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQ  192 (1630)
T ss_pred             -CCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cch
Confidence             245555544 5799999964 2343333333    3556677777777  333332      3478888887653 344


Q ss_pred             EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC---CCcEEEEecCCC---
Q 012799          276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DFTMFLWEPAVS---  349 (456)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~---  349 (456)
                      .+.+|......+......                                 .+...++.+..   .+.+.|-++...   
T Consensus       193 ~iegha~~F~~~~~~~~~---------------------------------~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~  239 (1630)
T 1xi4_A          193 PIEGHAASFAQFKMEGNA---------------------------------EESTLFCFAVRGQAGGKLHIIEVGTPPTG  239 (1630)
T ss_pred             hhhHhHhhhheeccCCCC---------------------------------CCceEEEEEEecCCCceEEEEecCCCccC
Confidence            555665544443332210                                 00112222221   267888886443   


Q ss_pred             CCCc-----ccccc---ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEE
Q 012799          350 KQPK-----TRMTG---HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (456)
Q Consensus       350 ~~~~-----~~~~~---~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  406 (456)
                      ....     .....   -.+-..++..|+.-..+..-+.-|.+.+||+.+|.++..-+-...+|.
T Consensus       240 ~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF  304 (1630)
T 1xi4_A          240 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  304 (1630)
T ss_pred             CCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceE
Confidence            1111     01111   123345677788777888888999999999999998765543344443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.97  E-value=0.1  Score=46.71  Aligned_cols=145  Identities=16%  Similarity=0.054  Sum_probs=92.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEecCc----CccEEEEEeCCCCeEEEEeCCCcEEEEECCCCe------------
Q 012799          209 PCRRFVSASKDGDARIWDVSLRKCVICLSGH----TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK------------  272 (456)
Q Consensus       209 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------  272 (456)
                      ++..++.+-. +.||.-++......+.++..    -..|..+..+|+|.+++-..+..|.+..+..+.            
T Consensus        31 n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           31 NGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             TTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred             CCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence            4444444433 56776666643333333222    235788999999966666777889999887331            


Q ss_pred             EEEEeec------CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEec
Q 012799          273 LIRELKG------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (456)
Q Consensus       273 ~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  346 (456)
                      ..+.+..      ...+|..+.|+|-+..                                 +..|++-..|+.|++||+
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~---------------------------------ds~LVVLtsD~~Ir~yDl  156 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYR---------------------------------DSCIVVLKEDDTITMFDI  156 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTBGG---------------------------------GCEEEEEETTSCEEEEET
T ss_pred             ceeEEEcCCcccCCCCceeEEEeccccCC---------------------------------CCeEEEEecCCEEEEEEc
Confidence            1222322      2466888999987432                                 556999999999999998


Q ss_pred             CCCC-CCcccc---------ccccccEeEEEECCCCCEEEEEE--CCCcEEEEe
Q 012799          347 AVSK-QPKTRM---------TGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWN  388 (456)
Q Consensus       347 ~~~~-~~~~~~---------~~~~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd  388 (456)
                      .... .+. .+         ......|.+++|.+++-.|...+  ..|.|+-.-
T Consensus       157 ~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          157 LNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             TCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred             ccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence            7632 222 11         12235688999999877677755  778776553

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.95  E-value=0.056  Score=46.75  Aligned_cols=63  Identities=8%  Similarity=0.119  Sum_probs=34.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEEEe--cCcCccEEEEEeCCCC-eEEEEeCCC-----cEEEEECCCCeE
Q 012799          209 PCRRFVSASKD-----GDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIYTGSQDC-----TIKVWETTQGKL  273 (456)
Q Consensus       209 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~dg-----~i~iwd~~~~~~  273 (456)
                      ++..++.|+.+     ..+.+||..+.+-...-  .........+.+  ++ .++.|+.++     .+.+||+.+.+-
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W  136 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEW  136 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence            55677777754     35889998876533322  111111222222  34 555666543     477888877653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.94  E-value=0.063  Score=46.55  Aligned_cols=102  Identities=6%  Similarity=0.070  Sum_probs=53.5

Q ss_pred             CEEEEEeCC--CeEEEEeCCCCCCccc-cccCcccceEEEEecccccCCCCCEEEEEeCC----CcEEEEECCCCeEEEE
Q 012799          163 KHLVSGSKA--GELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKD----GDARIWDVSLRKCVIC  235 (456)
Q Consensus       163 ~~l~s~~~d--g~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~  235 (456)
                      .+++.|+.+  ..+.+||..+++-... .+......-..+.+       ++..++.|+.+    ..+.+||..+.+-...
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~   85 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW-------DNVVYILGGSQLFPIKRMDCYNVVKDSWYSK   85 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE-------TTEEEEECCBSSSBCCEEEEEETTTTEEEEE
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE-------CCEEEEEeCCCCCCcceEEEEeCCCCeEEEC
Confidence            345556543  5688899887653211 11111111122222       55677788755    6788999887654322


Q ss_pred             --ecCcCccEEEEEeCCCC-eEEEEeCC------CcEEEEECCCCeE
Q 012799          236 --LSGHTLAVTCVKWGGDG-VIYTGSQD------CTIKVWETTQGKL  273 (456)
Q Consensus       236 --~~~~~~~v~~~~~~~~~-~l~~~~~d------g~i~iwd~~~~~~  273 (456)
                        +.........+.+  ++ .++.|+.+      ..+.+||..+.+-
T Consensus        86 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W  130 (306)
T 3ii7_A           86 LGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW  130 (306)
T ss_dssp             ECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred             CCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence              2211112222222  34 55666654      4588999887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.024  Score=49.55  Aligned_cols=149  Identities=8%  Similarity=-0.022  Sum_probs=83.9

Q ss_pred             CeEEEEECCCcEEEEeCCCCcceeEEecC-CCCEEEEEEc--CCCCEEEEE--eCCCeEEEEeCCCCCCccccccC---c
Q 012799          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGH-KNWVLCIAWS--ADGKHLVSG--SKAGELQCWDPQTGKPSGNPLSG---H  192 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~---~  192 (456)
                      .+++.++.||.|.-.|..+|+.+.++... ..++....-.  +.+..++.+  +.||.+..++..+|.........   .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46888999999999999999998887654 1222221100  112234433  57999999998877432211000   0


Q ss_pred             ccceEEEEeccccc----CCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC--c-----cEEEEEe------CCCCeEE
Q 012799          193 KKWITGISWEPVHL----NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT--L-----AVTCVKW------GGDGVIY  255 (456)
Q Consensus       193 ~~~v~~~~~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~-----~v~~~~~------~~~~~l~  255 (456)
                      ..++.. .-.|.-.    ...+..+++|+.+|.+...|+.+|+.+..+....  .     ...|...      ..++.++
T Consensus        91 ~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~  169 (339)
T 2be1_A           91 TSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV  169 (339)
T ss_dssp             TCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred             cccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence            111111 1111100    0034688999999999999999999999886332  1     0111111      1123667


Q ss_pred             EEeCCCcEEEEECCCC
Q 012799          256 TGSQDCTIKVWETTQG  271 (456)
Q Consensus       256 ~~~~dg~i~iwd~~~~  271 (456)
                      .+..+..+.+.+ ++|
T Consensus       170 ig~~~y~v~~~~-~sG  184 (339)
T 2be1_A          170 IGKTIFELGIHS-YDG  184 (339)
T ss_dssp             EEEEEEECEECC-TTS
T ss_pred             EecceEEEEEEC-CCC
Confidence            777776666666 344

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.93  E-value=0.026  Score=45.41  Aligned_cols=106  Identities=10%  Similarity=0.040  Sum_probs=61.8

Q ss_pred             cEEEEEeCCCCeEEEEeCCCcEEEEECCCCeE------EEEeec-CCcceEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799          242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL------IRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (456)
Q Consensus       242 ~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (456)
                      .+.+++|+|+|.|.+. .+|.++-.+..+...      -..+-. .-.....+.+.++                      
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~----------------------   98 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPN----------------------   98 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTT----------------------
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCC----------------------
Confidence            5679999999977777 788877777654211      111100 0011356666665                      


Q ss_pred             HHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc------ccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799          315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (456)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  388 (456)
                                    +.+.++  .||.|+-++..+.....-..      ..--..+..|.|.|+|.+.+..  ||.++-..
T Consensus        99 --------------G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~  160 (236)
T 1tl2_A           99 --------------GYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKAL  160 (236)
T ss_dssp             --------------SCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEEC
T ss_pred             --------------CCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecC
Confidence                          333444  66999888854332211111      1111468999999999876666  88754433

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.91  E-value=0.069  Score=47.45  Aligned_cols=143  Identities=8%  Similarity=0.094  Sum_probs=76.5

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEE----ecCCCCEEEEEEcCC---CCEEEEEe-C-------CC
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKC----TGHKNWVLCIAWSAD---GKHLVSGS-K-------AG  172 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~----~~~~~~v~~~~~~~~---~~~l~s~~-~-------dg  172 (456)
                      ....|+|.|+|+.|+.+...|.|++++.....  .+..+    .........|+++|+   +..|..+. .       ..
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            45789999999934445578999999854221  11111    122456789999996   45554442 2       23


Q ss_pred             eEEEEeCCCCCC-------cccccc---CcccceEEEEecccccCCCCCEEEEEeCC-------------CcEEEEECCC
Q 012799          173 ELQCWDPQTGKP-------SGNPLS---GHKKWITGISWEPVHLNAPCRRFVSASKD-------------GDARIWDVSL  229 (456)
Q Consensus       173 ~i~vwd~~~~~~-------~~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~  229 (456)
                      .|..|++..+..       +...+.   ........+.|.|     +|.++++.+..             |.|.-++...
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-----dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-----KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-----SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-----CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence            566666653310       000011   1111235688888     88655554332             4566666542


Q ss_pred             C--------------eEEEEecCcCccEEEEEeCC-CCeEEEEeC
Q 012799          230 R--------------KCVICLSGHTLAVTCVKWGG-DGVIYTGSQ  259 (456)
Q Consensus       230 ~--------------~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~  259 (456)
                      .              ..+.. .++ .....++|++ ++.|+++..
T Consensus       174 ~~p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~  216 (353)
T 2g8s_A          174 EIPDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEH  216 (353)
T ss_dssp             CCCTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEE
T ss_pred             CCCCCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEec
Confidence            2              01111 122 2357788998 666666544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.91  E-value=0.51  Score=49.01  Aligned_cols=114  Identities=10%  Similarity=0.032  Sum_probs=69.0

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE-EecCCCCEEEEEEcCC------CCEEEEEeC-CCeEEEEeCC
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSAD------GKHLVSGSK-AGELQCWDPQ  180 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~------~~~l~s~~~-dg~i~vwd~~  180 (456)
                      ..|...+.+.  .+++.++ ++.+.++.++.++.... -..-...|.|+++.|.      +++++.|.. |++++|+++.
T Consensus       514 ~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~  590 (1158)
T 3ei3_A          514 KNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP  590 (1158)
T ss_dssp             CCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence            3566666543  3566655 56788888765432111 1124568999999863      468999997 9999999998


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  228 (456)
                      +.+.+.....+......++.+....   ...++..|-.||.+.-+.+.
T Consensus       591 ~l~~~~~~~L~~~~~p~si~l~~~~---~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          591 SFELLHKEMLGGEIIPRSILMTTFE---SSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             TCCEEEEEECCSSCCEEEEEEEEET---TEEEEEEEETTSEEEEEEEC
T ss_pred             CCCeEEEEECCCCCCCcEEEEEEeC---CCcEEEEEeCCCeEEEEEEc
Confidence            6554321111111233444443221   33578889999988666543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.80  E-value=0.054  Score=47.07  Aligned_cols=104  Identities=13%  Similarity=0.169  Sum_probs=50.3

Q ss_pred             CCCEEEEEeCC----CeEEEEeCCCCCCcccc-ccCcccceEEEEecccccCCCCCEEEEEeC----C-----CcEEEEE
Q 012799          161 DGKHLVSGSKA----GELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASK----D-----GDARIWD  226 (456)
Q Consensus       161 ~~~~l~s~~~d----g~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~----d-----g~i~iwd  226 (456)
                      ++..++.|+.+    ..+.+||..+++-.... +......-..+..       ++..++.|+.    +     ..+.+||
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~~~~~~~~d   96 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-------GGLLYAVGGRNNSPDGNTDSSALDCYN   96 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-------TTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-------CCEEEEECCCcCCCCCCeecceEEEEC
Confidence            45556666532    35788887765422110 1101111111111       4567777765    2     4688899


Q ss_pred             CCCCeEEEE--ecCcCccEEEEEeCCCC-eEEEEeCC-----CcEEEEECCCCeE
Q 012799          227 VSLRKCVIC--LSGHTLAVTCVKWGGDG-VIYTGSQD-----CTIKVWETTQGKL  273 (456)
Q Consensus       227 ~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~d-----g~i~iwd~~~~~~  273 (456)
                      ..+.+-...  +.........+.+  ++ .++.|+.+     ..+.+||..+.+-
T Consensus        97 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  149 (308)
T 1zgk_A           97 PMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW  149 (308)
T ss_dssp             TTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred             CCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence            887653322  1111112222222  34 55555433     3578888887653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.75  E-value=0.12  Score=44.95  Aligned_cols=100  Identities=12%  Similarity=0.052  Sum_probs=48.9

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCccccccCc-ccceEEEEecccccCCCCCEEEEEeC----C-------CcEEEEECCCCe
Q 012799          164 HLVSGSKAGELQCWDPQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASK----D-------GDARIWDVSLRK  231 (456)
Q Consensus       164 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~l~~~~~----d-------g~i~iwd~~~~~  231 (456)
                      +++.|+  ..+..||..+++-........ ...-.++.. .     ++..++.|+.    +       ..+..||..+.+
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-----~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~   78 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVT-K-----ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE   78 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEEC-T-----TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEE-E-----CCEEEEEcCcccCCCCCccccccceEEecCCCCe
Confidence            344555  578899988776322111111 111112221 1     6678888873    1       127788888765


Q ss_pred             EEEE--ecCcCccEEEEEeCCCC-eEEEEeCC--------CcEEEEECCCCeE
Q 012799          232 CVIC--LSGHTLAVTCVKWGGDG-VIYTGSQD--------CTIKVWETTQGKL  273 (456)
Q Consensus       232 ~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~d--------g~i~iwd~~~~~~  273 (456)
                      -...  +.........+.+  ++ .++.|+.+        ..+.+||..+.+-
T Consensus        79 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W  129 (315)
T 4asc_A           79 WLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW  129 (315)
T ss_dssp             EEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEE
T ss_pred             EEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcE
Confidence            3221  1111111112222  34 55555532        3588899887653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.66  E-value=0.61  Score=46.30  Aligned_cols=233  Identities=12%  Similarity=0.125  Sum_probs=131.1

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe--c----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--G----HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--~----~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  181 (456)
                      ...|.++....+|.+.+ |+.+| +..++..+++.. .+.  .    ....|.++...+++..|..|+. +-+..+|..+
T Consensus       145 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~  220 (758)
T 3ott_A          145 NNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST  220 (758)
T ss_dssp             CSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT
T ss_pred             CCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC
Confidence            35688998888887555 45544 778887665432 221  1    1234888888777776666664 4578888776


Q ss_pred             CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-------CcCccEEEEEeCCCCeE
Q 012799          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-------GHTLAVTCVKWGGDGVI  254 (456)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~l  254 (456)
                      ++... ........|.++....     ++. +..|+. +-+.+++..+.+......       -....|.++..+.+|.|
T Consensus       221 ~~~~~-~~~l~~~~i~~i~~d~-----~g~-lWigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l  292 (758)
T 3ott_A          221 GQIKQ-TEAFHNNSIKSLALDG-----NGD-LLAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI  292 (758)
T ss_dssp             TEEEE-EEEEEEEEEEEEEECT-----TCC-EEEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE
T ss_pred             CeEEe-ccCCCCCeEEEEEEcC-----CCC-EEEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE
Confidence            54321 1111123466665543     444 455564 458888887665432221       12345899999988888


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEee-------cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799          255 YTGSQDCTIKVWETTQGKLIRELK-------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (456)
Q Consensus       255 ~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (456)
                      ..|+..| +.++....  ....+.       .....|.++....+                                   
T Consensus       293 WiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~-----------------------------------  334 (758)
T 3ott_A          293 WLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSK-----------------------------------  334 (758)
T ss_dssp             EEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTT-----------------------------------
T ss_pred             EEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCC-----------------------------------
Confidence            8888777 55543321  111111       01234555554433                                   


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCC-Cccccc-------cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799          328 APERLVSGSDDFTMFLWEPAVSKQ-PKTRMT-------GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (456)
Q Consensus       328 ~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~-------~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  395 (456)
                        ..+..|+.+| +..++...... ....+.       -....|.++.-..+|++-+ |+ ++-+..||..+++..
T Consensus       335 --g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~  405 (758)
T 3ott_A          335 --GFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFI  405 (758)
T ss_dssp             --CCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEE
T ss_pred             --CCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEE
Confidence              2356666554 66666443211 110010       1124588998888887544 44 456999998887653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.49  E-value=0.41  Score=42.25  Aligned_cols=151  Identities=14%  Similarity=0.173  Sum_probs=76.2

Q ss_pred             CCCcEEEEECCCC--eE-EEEecC-----cCccEEEEEeCC--CC--eEEEEeC---CCcEEEEECCCC--e--EEEEee
Q 012799          218 KDGDARIWDVSLR--KC-VICLSG-----HTLAVTCVKWGG--DG--VIYTGSQ---DCTIKVWETTQG--K--LIRELK  278 (456)
Q Consensus       218 ~dg~i~iwd~~~~--~~-~~~~~~-----~~~~v~~~~~~~--~~--~l~~~~~---dg~i~iwd~~~~--~--~~~~~~  278 (456)
                      .+|.|.++|..+.  +. ...+.+     ..-....+.+.+  ++  +|+++..   +.+|.+|++..+  .  .+..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6899999998732  21 112222     123556666644  34  4555533   356777665542  2  223333


Q ss_pred             cC-CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc
Q 012799          279 GH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT  357 (456)
Q Consensus       279 ~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  357 (456)
                      +. -...+.+.+.+++.+..+....    +..+....   ....   .         +...|.++.+|..   . .....
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~----ftd~~~~~---~e~~---~---------~~~~g~vyr~d~~---~-~~~~~  217 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHY----FIDPYLKS---WEMH---L---------GLAWSFVTYYSPN---D-VRVVA  217 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCS----CSSHHHHH---HHHH---T---------TCCCEEEEEECTT---C-CEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcE----eCCccccc---chhh---c---------cCCccEEEEEECC---e-EEEee
Confidence            21 2346777777776543322111    01110000   0000   0         1123456666642   2 22222


Q ss_pred             cccccEeEEEECCCCCEEEEEE-CCCcEEEEeCCC
Q 012799          358 GHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTT  391 (456)
Q Consensus       358 ~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~  391 (456)
                      ..-...+.++||||++.|+.+. ..+.|..|++..
T Consensus       218 ~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          218 EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            3334578999999998876654 567899999863

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.10  E-value=0.24  Score=43.15  Aligned_cols=65  Identities=11%  Similarity=0.033  Sum_probs=33.0

Q ss_pred             CCCEEEEEeC----CC-------cEEEEECCCCeEEEE--ecCcCccEEEEEeCCCCeEEEEeCC-------CcEEEEEC
Q 012799          209 PCRRFVSASK----DG-------DARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGVIYTGSQD-------CTIKVWET  268 (456)
Q Consensus       209 ~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~d-------g~i~iwd~  268 (456)
                      ++..++.|+.    ++       .+..||..+.+-...  +.........+.+ .+..++.|+.+       ..+.+||.
T Consensus        56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~  134 (318)
T 2woz_A           56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDP  134 (318)
T ss_dssp             SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred             CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeC
Confidence            5677788873    12       177888877654322  1111111122222 22255556543       24788888


Q ss_pred             CCCeEE
Q 012799          269 TQGKLI  274 (456)
Q Consensus       269 ~~~~~~  274 (456)
                      .+.+-.
T Consensus       135 ~~~~W~  140 (318)
T 2woz_A          135 VAAKWS  140 (318)
T ss_dssp             TTTEEE
T ss_pred             CCCCEe
Confidence            876543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.01  E-value=0.68  Score=40.18  Aligned_cols=134  Identities=13%  Similarity=0.074  Sum_probs=65.2

Q ss_pred             cEEEEeCCCCccee-EEecCCCCEEEEEEcCCCCEEEEEeC----CC-------eEEEEeCCCCCCccc-cccCcccceE
Q 012799          131 TVRLWDLNTQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSK----AG-------ELQCWDPQTGKPSGN-PLSGHKKWIT  197 (456)
Q Consensus       131 ~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~----dg-------~i~vwd~~~~~~~~~-~~~~~~~~v~  197 (456)
                      .+..||..+++-.. ................++..++.|+.    ++       .+..||..+++-... .+........
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  104 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG  104 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence            37888887765332 11111112222233457778888873    12       177888876643211 1111111111


Q ss_pred             EEEecccccCCCCCEEEEEeCC-------CcEEEEECCCCeEEEEe--cCcCccEEEEEeCCCC-eEEEEeC------CC
Q 012799          198 GISWEPVHLNAPCRRFVSASKD-------GDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIYTGSQ------DC  261 (456)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~------dg  261 (456)
                      .+.+       ++..++.|+.+       ..+.+||..+.+-...-  ........ ++. .++ .++.|+.      -.
T Consensus       105 ~~~~-------~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~  175 (318)
T 2woz_A          105 LGEV-------DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHN-VIS-HNGMIYCLGGKTDDKKCTN  175 (318)
T ss_dssp             EEEE-------TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCE-EEE-ETTEEEEECCEESSSCBCC
T ss_pred             eEEE-------CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccE-EEE-ECCEEEEEcCCCCCCCccc
Confidence            1222       55677777764       25788898876543321  11111111 222 244 4455543      23


Q ss_pred             cEEEEECCCCeE
Q 012799          262 TIKVWETTQGKL  273 (456)
Q Consensus       262 ~i~iwd~~~~~~  273 (456)
                      .+.+||+.+.+-
T Consensus       176 ~~~~yd~~~~~W  187 (318)
T 2woz_A          176 RVFIYNPKKGDW  187 (318)
T ss_dssp             CEEEEETTTTEE
T ss_pred             eEEEEcCCCCEE
Confidence            588999887653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.93  E-value=0.36  Score=42.77  Aligned_cols=24  Identities=8%  Similarity=0.097  Sum_probs=16.7

Q ss_pred             CCCEEEEEeC-C---------CcEEEEECCCCeE
Q 012799          209 PCRRFVSASK-D---------GDARIWDVSLRKC  232 (456)
Q Consensus       209 ~~~~l~~~~~-d---------g~i~iwd~~~~~~  232 (456)
                      ++..++.|+. +         ..+.+||..+.+-
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W   98 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW   98 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence            5567777776 2         4688999887653

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.92  E-value=0.68  Score=39.41  Aligned_cols=223  Identities=14%  Similarity=0.072  Sum_probs=115.3

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  189 (456)
                      .|..++....  +.+.-. ||.|+.|-......+-.-......|..++...+. .++. . ||.|..|-......+... 
T Consensus        25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P-   97 (282)
T 3qhy_B           25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP-   97 (282)
T ss_dssp             SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC-
T ss_pred             CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC-
Confidence            5666666543  222224 8899999765432222111223457777765433 3333 4 899999976654333211 


Q ss_pred             cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECC
Q 012799          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT  269 (456)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~  269 (456)
                      ..-...|..++...       .+.+.-. ||.|+.|-......+-........|..++......++. . ||.|+.|-..
T Consensus        98 ~~~~~~v~~ia~G~-------~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n  167 (282)
T 3qhy_B           98 AEARSGVDAIAAGA-------WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV-K-NGGVIAWGDN  167 (282)
T ss_dssp             GGGSSSEEEEEEET-------TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E-TTEEEEEECC
T ss_pred             cccCCCeEEEECcC-------CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE-E-CCEEEEecCC
Confidence            11234577776543       3455556 99999997654221111111234577777665543333 3 7999999765


Q ss_pred             CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC
Q 012799          270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS  349 (456)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  349 (456)
                      ....+..-......|..++....                                     ..++.  .||.++.|=....
T Consensus       168 ~~gqlg~p~~~~~~v~~i~~G~~-------------------------------------hs~al--~~G~v~~wG~n~~  208 (282)
T 3qhy_B          168 YFGQTTVPAEAQSGVDDVAGGIF-------------------------------------HSLAL--KDGKVIAWGDNRY  208 (282)
T ss_dssp             TTSTTSCCGGGGSSEEEEEECSS-------------------------------------EEEEE--ETTEEEEEECCTT
T ss_pred             CCCCCCCceecCCCeEEEEecCC-------------------------------------EEEEE--ECCeEEEEECCCC
Confidence            42111100001223444444332                                     12333  5999999974433


Q ss_pred             CCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799          350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       350 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  392 (456)
                      .+.-... .....|..++...+.. ++..  ||.|..|-....
T Consensus       209 gqlg~p~-~~~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~~  247 (282)
T 3qhy_B          209 KQTTVPT-EALSGVSAIASGEWYS-LALK--NGKVIAWGSSRT  247 (282)
T ss_dssp             STTCCCG-GGGSSCCEEEECSSCE-EEEE--TTEEEEESTTCC
T ss_pred             CCCCCCc-ccCCCceEEEcCCCEE-EEEE--CCEEEEecCCCC
Confidence            2221111 1123477777654433 3333  999999976553

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.82  E-value=1.2  Score=41.52  Aligned_cols=93  Identities=15%  Similarity=0.121  Sum_probs=56.3

Q ss_pred             EEEEECCCcEEEEeCCCCcceeEEecC-------------------------CCC--EEEEEEcC---CCCEEEEEeC-C
Q 012799          123 LASGSGDTTVRLWDLNTQTPMFKCTGH-------------------------KNW--VLCIAWSA---DGKHLVSGSK-A  171 (456)
Q Consensus       123 l~~~~~d~~v~vwd~~~~~~~~~~~~~-------------------------~~~--v~~~~~~~---~~~~l~s~~~-d  171 (456)
                      |.+|+..|.|+|+-+.+++.+..+.-.                         .+.  =..+++..   ||++|+.-.. +
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            667888999999998888776665310                         000  11234432   6788888764 4


Q ss_pred             CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799          172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (456)
Q Consensus       172 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~  218 (456)
                      ..|...+++..+....+.......+.+++|...   ++..++++++.
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~---p~T~yv~~~~e  196 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKV---PHTKYVFANAE  196 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCS---SBCCEEEEEEC
T ss_pred             cceEEEECCcEeeceeEeCCCCcCccccccccc---CCccEEEecce
Confidence            568888888776544333444556667776521   14456666554

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.68  E-value=0.86  Score=38.80  Aligned_cols=184  Identities=14%  Similarity=0.069  Sum_probs=94.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC
Q 012799          151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR  230 (456)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  230 (456)
                      ..|..++....  +.+.-. ||.|..|-......+... ......|..++...       .+.+.-. ||.|+.|-....
T Consensus        24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~-------~hs~~l~-~G~v~~wG~n~~   91 (282)
T 3qhy_B           24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGN-------YHSLALK-DGEVIAWGGNED   91 (282)
T ss_dssp             SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECS-------SEEEEEE-TTEEEEEECCTT
T ss_pred             CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCC-------CEEEEEE-CCEEEEeeCCCC
Confidence            35777776433  333335 899999976654433311 11233566666533       2333334 899999976532


Q ss_pred             eEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCCh
Q 012799          231 KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (456)
Q Consensus       231 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (456)
                      ..+-.-..-...|..++......++ -. +|.|+.|-......+..-......|..++....                  
T Consensus        92 Gqlg~P~~~~~~v~~ia~G~~hs~a-l~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~------------------  151 (282)
T 3qhy_B           92 GQTTVPAEARSGVDAIAAGAWASYA-LK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY------------------  151 (282)
T ss_dssp             STTCCCGGGSSSEEEEEEETTEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS------------------
T ss_pred             CCCCCCcccCCCeEEEECcCCEEEE-Ee-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC------------------
Confidence            1111111113467777776654333 34 999999976542111100111223444443322                  


Q ss_pred             HHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                                          ..+.-. ||.++.|-.....+.-. ...-...|..++...+. .++.  .||.|+.|-..
T Consensus       152 --------------------~~~~l~-~G~v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n  206 (282)
T 3qhy_B          152 --------------------TALAVK-NGGVIAWGDNYFGQTTV-PAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDN  206 (282)
T ss_dssp             --------------------EEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECC
T ss_pred             --------------------EEEEEE-CCEEEEecCCCCCCCCC-ceecCCCeEEEEecCCE-EEEE--ECCeEEEEECC
Confidence                                122223 79999997443322211 11113457777765433 2343  59999999755


Q ss_pred             C
Q 012799          391 T  391 (456)
Q Consensus       391 ~  391 (456)
                      .
T Consensus       207 ~  207 (282)
T 3qhy_B          207 R  207 (282)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.64  E-value=1.3  Score=40.65  Aligned_cols=105  Identities=10%  Similarity=0.107  Sum_probs=60.3

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce--eEEec------CCCCEEEEEEcCC---CCEEEEEeC-------
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKCTG------HKNWVLCIAWSAD---GKHLVSGSK-------  170 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~s~~~-------  170 (456)
                      ....+|+|.|+|+++++-...+.|++++..+++..  ..+..      .......|+|+|+   +..|..+..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            35679999999997776543347888876545432  22211      2456789999995   555554432       


Q ss_pred             ------CCeEEEEeCCCCC-------Cccccc-cCcccceEEEEecccccCCCCCEEEEEeC
Q 012799          171 ------AGELQCWDPQTGK-------PSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASK  218 (456)
Q Consensus       171 ------dg~i~vwd~~~~~-------~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~  218 (456)
                            ...|.-++...+.       .+...+ .........+.|.|     +|.++++.+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-----DG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-----DQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-----TSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-----CCeEEEEECC
Confidence                  1345555553321       111001 11123467888888     8887776553

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.54  E-value=1.3  Score=39.88  Aligned_cols=148  Identities=12%  Similarity=0.213  Sum_probs=92.8

Q ss_pred             EEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCc
Q 012799          113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGH  192 (456)
Q Consensus       113 ~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  192 (456)
                      +.-.+|..+.+|.-. ..++.|||+++...+..+.-.+ .|.-=.|-.+ +.|+..+ +..|.-|++.......+.+..|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence            345678888777765 6799999999998888877444 5666666533 4555554 4589999997543332233333


Q ss_pred             c----cceEEEEecccccCCCCCEEEEEe-------CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC---eEEE-E
Q 012799          193 K----KWITGISWEPVHLNAPCRRFVSAS-------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYT-G  257 (456)
Q Consensus       193 ~----~~v~~~~~~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~-~  257 (456)
                      .    ..|..-..++     +.+.++..|       -.|.+.+|..+.+. .+.+.+|......+....+.   .+++ +
T Consensus       146 ~~L~~~QIInY~~d~-----~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa  219 (494)
T 1bpo_A          146 SSLAGCQIINYRTDA-----KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFA  219 (494)
T ss_dssp             GGGTTCEEEEEEECT-----TSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEE
T ss_pred             hhcccceEEEEEECC-----CCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEE
Confidence            2    3344444444     667766443       24778999987553 45577887777666665432   3333 3


Q ss_pred             eC---CCcEEEEECCC
Q 012799          258 SQ---DCTIKVWETTQ  270 (456)
Q Consensus       258 ~~---dg~i~iwd~~~  270 (456)
                      ..   .+.+++.++..
T Consensus       220 ~r~~~g~kLhi~Ei~~  235 (494)
T 1bpo_A          220 VRGQAGGKLHIIEVGT  235 (494)
T ss_dssp             ECSTTCCEEEEEECSC
T ss_pred             EecCCCcEEEEEEcCC
Confidence            33   26788888754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.49  E-value=0.54  Score=41.62  Aligned_cols=63  Identities=13%  Similarity=0.142  Sum_probs=34.5

Q ss_pred             CCCeEEEEEC-CCcEEEEeCCCC-cceeEEec----CCCCEEEEEEcCCCCEEEEEeC-C---------CeEEEEeCCCC
Q 012799          119 DGRQLASGSG-DTTVRLWDLNTQ-TPMFKCTG----HKNWVLCIAWSADGKHLVSGSK-A---------GELQCWDPQTG  182 (456)
Q Consensus       119 ~~~~l~~~~~-d~~v~vwd~~~~-~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~-d---------g~i~vwd~~~~  182 (456)
                      ++++++.|+. ...+.+||..+. ..-..+..    ....-.++.+  ++++++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            6677777764 346888888641 11112211    1111222222  5667777765 2         35889998876


Q ss_pred             C
Q 012799          183 K  183 (456)
Q Consensus       183 ~  183 (456)
                      +
T Consensus        97 ~   97 (357)
T 2uvk_A           97 S   97 (357)
T ss_dssp             E
T ss_pred             c
Confidence            5

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.47  E-value=1.6  Score=45.68  Aligned_cols=147  Identities=12%  Similarity=0.196  Sum_probs=85.8

Q ss_pred             EEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCc-
Q 012799          114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGH-  192 (456)
Q Consensus       114 ~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-  192 (456)
                      .-.+|..+.+|.-. ..++.|||+++...+..+.- ...|.-=.|-.+. .|+..+ +..|.-|++.......+.+..| 
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence            34677777777654 67899999999888877663 4456666776443 444444 3479999997543333234333 


Q ss_pred             ---ccceEEEEecccccCCCCCEEEEEe-------CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC---eEEEEeC
Q 012799          193 ---KKWITGISWEPVHLNAPCRRFVSAS-------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQ  259 (456)
Q Consensus       193 ---~~~v~~~~~~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~  259 (456)
                         ...|..-..++     +.+.++..|       -.|.+.+|..+.+. .+.+.||.+....+....+.   .+++-..
T Consensus       147 ~L~~~QIinY~~d~-----~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~  220 (1630)
T 1xi4_A          147 SLAGCQIINYRTDA-----KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAV  220 (1630)
T ss_pred             hcccCeeEEeeeCC-----CCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEE
Confidence               23344444444     666666433       35788999876543 33455666555444443211   2333221


Q ss_pred             ----CCcEEEEECCC
Q 012799          260 ----DCTIKVWETTQ  270 (456)
Q Consensus       260 ----dg~i~iwd~~~  270 (456)
                          .+.+++.++..
T Consensus       221 ~~~~g~kLhi~Ei~~  235 (1630)
T 1xi4_A          221 RGQAGGKLHIIEVGT  235 (1630)
T ss_pred             ecCCCceEEEEecCC
Confidence                26788888754

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.45  E-value=1.2  Score=39.03  Aligned_cols=75  Identities=17%  Similarity=0.110  Sum_probs=48.8

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee--EE----ecCCCCEEEEEEcCC---CCEEEEE---eCCCeE
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KC----TGHKNWVLCIAWSAD---GKHLVSG---SKAGEL  174 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~--~~----~~~~~~v~~~~~~~~---~~~l~s~---~~dg~i  174 (456)
                      .-..-..|+|.|||+++++--..|.|++++..+++...  .+    .........|+++|+   +..|...   ..++.|
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            34456899999999977776548999999866554321  11    123567899999995   3444433   234566


Q ss_pred             EEEeCCC
Q 012799          175 QCWDPQT  181 (456)
Q Consensus       175 ~vwd~~~  181 (456)
                      .-|.+..
T Consensus       110 ~R~~~~~  116 (347)
T 3das_A          110 VRMLYDE  116 (347)
T ss_dssp             EEEEBCT
T ss_pred             EEEEeCC
Confidence            6666654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.23  E-value=1.2  Score=43.58  Aligned_cols=149  Identities=10%  Similarity=0.055  Sum_probs=78.0

Q ss_pred             CCCCeEEEEECC----CcEEEEeCCCCcceeEE-e------cCCCCEEEEEEcC-CCCEEEEEeCCC------eEEEEeC
Q 012799          118 PDGRQLASGSGD----TTVRLWDLNTQTPMFKC-T------GHKNWVLCIAWSA-DGKHLVSGSKAG------ELQCWDP  179 (456)
Q Consensus       118 ~~~~~l~~~~~d----~~v~vwd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~s~~~dg------~i~vwd~  179 (456)
                      .++.+++.|+.+    ..+.+||..+++-...- .      .....-.+++..+ +++.++.||.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777643    36888888766432221 1      1111112333333 677777877543      4788888


Q ss_pred             CCCCCccc-cccCcccceEEEEecccccCCCCCEEEEEeCCC--cEEEEECCCCeEEEEec-----CcCccEEEEEeCCC
Q 012799          180 QTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--DARIWDVSLRKCVICLS-----GHTLAVTCVKWGGD  251 (456)
Q Consensus       180 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~  251 (456)
                      .+.+-... .+...... .+++...     ++..++.||.++  .+.+||..+.+-...-.     .......++.+..+
T Consensus       476 ~t~~W~~~~~~p~~R~~-h~~~~~~-----~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFR-HSACSLP-----DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             TTTEEEECCCCSBCCBS-CEEEECT-----TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred             CCCcEEECCCCCCCccc-ceEEEEc-----CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence            77542211 01111111 1122111     567888887755  69999998775433211     01112233444544


Q ss_pred             -C-eEEEEeC--C-----CcEEEEECCCCe
Q 012799          252 -G-VIYTGSQ--D-----CTIKVWETTQGK  272 (456)
Q Consensus       252 -~-~l~~~~~--d-----g~i~iwd~~~~~  272 (456)
                       + .++.|+.  +     +.+.+||+.+.+
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence             5 5555654  2     358889988766

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.98  E-value=1.4  Score=43.02  Aligned_cols=109  Identities=13%  Similarity=0.132  Sum_probs=56.2

Q ss_pred             CCCCEEEEEeCC----CeEEEEeCCCCCCcccc-------ccCcccceEEEEecccccCCCCCEEEEEeCC------CcE
Q 012799          160 ADGKHLVSGSKA----GELQCWDPQTGKPSGNP-------LSGHKKWITGISWEPVHLNAPCRRFVSASKD------GDA  222 (456)
Q Consensus       160 ~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g~i  222 (456)
                      .++..++.||.+    ..+.+||..+++-....       .......-..+.+..     ++..++.||.+      ..+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-----~~~lyv~GG~~~~~~~~~dv  470 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-----NNQLLLIGGRKAPHQGLSDN  470 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-----TTEEEEECCBSSTTCBCCCC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-----CCEEEEEcCCCCCCCccccE
Confidence            466777777754    35888888776432211       011111112222211     44567777653      357


Q ss_pred             EEEECCCCeEEEE--ecCcCccEEEEEeCCCCeEEEEeCCC--cEEEEECCCCeE
Q 012799          223 RIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGVIYTGSQDC--TIKVWETTQGKL  273 (456)
Q Consensus       223 ~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~  273 (456)
                      .+||..+.+-...  +......-.++.+..+..++.|+.++  .+.+||..+.+-
T Consensus       471 ~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W  525 (695)
T 2zwa_A          471 WIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF  525 (695)
T ss_dssp             EEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE
T ss_pred             EEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce
Confidence            8899887543322  11111122223323333666666544  689999988654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.54  E-value=2  Score=36.88  Aligned_cols=140  Identities=7%  Similarity=-0.009  Sum_probs=76.4

Q ss_pred             CCCCCeEEEEE--CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC--------------CeEEEEeCC
Q 012799          117 SPDGRQLASGS--GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA--------------GELQCWDPQ  180 (456)
Q Consensus       117 s~~~~~l~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--------------g~i~vwd~~  180 (456)
                      ++++.+++...  .++.|...+.+... ...+...    .+--+++++++|+-+...              ..|+..++.
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            35677777664  24567777765433 3344322    134557888888877543              357777777


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCCEEEEEe----CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEE
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY  255 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~  255 (456)
                      .++...  +....    +..|++     +++.|+...    .+..|+..++..... ..+..+..    .++++++ .|+
T Consensus        97 g~~~~~--l~~~~----~~~~s~-----~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy  160 (302)
T 3s25_A           97 GHGSTV--LDPDP----CIYASL-----IGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFY  160 (302)
T ss_dssp             SCCCEE--EECSC----EEEEEE-----ETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEE
T ss_pred             CCcceE--eecCC----ccEEEE-----eCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEE
Confidence            665322  22111    224555     667777665    344566666654333 23333322    2345555 444


Q ss_pred             -EEeCCCcEEEEECCCCeEEEEe
Q 012799          256 -TGSQDCTIKVWETTQGKLIREL  277 (456)
Q Consensus       256 -~~~~dg~i~iwd~~~~~~~~~~  277 (456)
                       +......|...++..+.....+
T Consensus       161 ~t~~g~~~Iy~~~l~g~~~~~l~  183 (302)
T 3s25_A          161 YNNPKNGQLYRYDTASQSEALFY  183 (302)
T ss_dssp             EECTTTCCEEEEETTTTEEEEEE
T ss_pred             EEeCCCceEEEEECCCCCEEEEe
Confidence             4444678888888776544333

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.21  E-value=2.7  Score=36.90  Aligned_cols=109  Identities=17%  Similarity=0.160  Sum_probs=61.6

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc-----ccccCcccceEEEEecccccCCCCCEEEEEe--CCC
Q 012799          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-----NPLSGHKKWITGISWEPVHLNAPCRRFVSAS--KDG  220 (456)
Q Consensus       148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~--~dg  220 (456)
                      ..-.....|+|.|+|+++++--..|.|++++...++...     ............++++|.-. .++..+++-+  .++
T Consensus        29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~-~~g~lYv~yt~~~~~  107 (347)
T 3das_A           29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYA-SDHMVYAYFTSASDN  107 (347)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHH-HHCEEEEEEECSSSE
T ss_pred             cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccc-cCCEEEEEEecCCCC
Confidence            344567899999999877766558999999876554311     01223345678999988210 0233444322  344


Q ss_pred             cEEEEECCC----------CeEEE-Eec-CcCccEEEEEeCCCCeEEEE
Q 012799          221 DARIWDVSL----------RKCVI-CLS-GHTLAVTCVKWGGDGVIYTG  257 (456)
Q Consensus       221 ~i~iwd~~~----------~~~~~-~~~-~~~~~v~~~~~~~~~~l~~~  257 (456)
                      .|.-|....          .+.+. .+. .....-..+.|.|+|.|+.+
T Consensus       108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt  156 (347)
T 3das_A          108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAG  156 (347)
T ss_dssp             EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEE
T ss_pred             EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEE
Confidence            565565543          12222 222 11223456899999944443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.14  E-value=2.5  Score=36.32  Aligned_cols=159  Identities=9%  Similarity=0.028  Sum_probs=85.8

Q ss_pred             ceEEEeecccccccccCCcccEEEEEECCCCCeEEEEECC--------------CcEEEEeCCCCcceeEEecCCCCEEE
Q 012799           90 AVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGD--------------TTVRLWDLNTQTPMFKCTGHKNWVLC  155 (456)
Q Consensus        90 ~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d--------------~~v~vwd~~~~~~~~~~~~~~~~v~~  155 (456)
                      .++++...+.....+...  .  +--++++|++|+.+...              ..|+..+++..+... +...  .  +
T Consensus        38 ~ly~~~~dg~~~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~  108 (302)
T 3s25_A           38 RLYAMNIDGSNIHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--C  108 (302)
T ss_dssp             EEEEEETTSCSCEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--E
T ss_pred             eEEEEcCCCCCCEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--c
Confidence            345555444444444322  1  34567889988877543              367777777655333 3212  1  2


Q ss_pred             EEEcCCCCEEEEEe--CC--CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCC
Q 012799          156 IAWSADGKHLVSGS--KA--GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLR  230 (456)
Q Consensus       156 ~~~~~~~~~l~s~~--~d--g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~  230 (456)
                      ..|+++++.|+-..  .+  ..|...++......  .+..+..    ..+++     +++.|+..+. ...|...++..+
T Consensus       109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~--~lt~~~~----~~~~~-----~g~~iy~t~~g~~~Iy~~~l~g~  177 (302)
T 3s25_A          109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK--KIKNHYL----FTCNT-----SDRYFYYNNPKNGQLYRYDTASQ  177 (302)
T ss_dssp             EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE--EEESSCC----CCSEE-----ETTEEEEECTTTCCEEEEETTTT
T ss_pred             cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE--EEeCCCc----eEeeE-----ECCEEEEEeCCCceEEEEECCCC
Confidence            36777888888776  33  34555566543322  2332322    23444     6667765554 678888888776


Q ss_pred             eEEEEecCcCccEEEEEeCCCC-eEEEEeCC--CcEEEEECCCCe
Q 012799          231 KCVICLSGHTLAVTCVKWGGDG-VIYTGSQD--CTIKVWETTQGK  272 (456)
Q Consensus       231 ~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d--g~i~iwd~~~~~  272 (456)
                      .....+.+   ... ..+.|++ .|+-...+  ..|..-++....
T Consensus       178 ~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          178 SEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             EEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             CEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            65444432   222 2345766 55544433  356666666544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=90.06  E-value=11  Score=34.46  Aligned_cols=106  Identities=13%  Similarity=0.191  Sum_probs=58.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc-ccc------CcccceEEEEecccccCCCCCEEEEEeC----
Q 012799          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN-PLS------GHKKWITGISWEPVHLNAPCRRFVSASK----  218 (456)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~------~~~~~v~~~~~~~~~~~~~~~~l~~~~~----  218 (456)
                      -.....|+|.|+|+++++-...+.|.+++..++..... .+.      ........++|+|.- .. +..|..+..    
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf-~~-~g~lYv~~s~~~~  103 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF-KN-NPYIYISGTFKNP  103 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT-TT-SCEEEEEEEEECT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCc-Cc-CCEEEEEEecccc
Confidence            34678999999998766654445788888655543210 011      124567799999821 11 344444332    


Q ss_pred             ---------CCcEEEEECCCC-------eEEE-Eec-CcCccEEEEEeCCCCeEEEE
Q 012799          219 ---------DGDARIWDVSLR-------KCVI-CLS-GHTLAVTCVKWGGDGVIYTG  257 (456)
Q Consensus       219 ---------dg~i~iwd~~~~-------~~~~-~~~-~~~~~v~~~~~~~~~~l~~~  257 (456)
                               ...|.-++....       +.+. .+. ........++|.|+|.|+.+
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~  160 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT  160 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred             CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence                     134555554321       1122 122 12234788999999944443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.77  E-value=14  Score=33.86  Aligned_cols=52  Identities=17%  Similarity=0.282  Sum_probs=34.7

Q ss_pred             cEEEEEECCCCC-eEEEEECCCcEEEEeCCCC---cceeEEe---------cCCCCEEEEEEcCC
Q 012799          110 AVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQ---TPMFKCT---------GHKNWVLCIAWSAD  161 (456)
Q Consensus       110 ~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~---~~~~~~~---------~~~~~v~~~~~~~~  161 (456)
                      .-..|+|.|||. .|+.+...|.|++++....   ..+..+.         ........|+|+|+
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            457899999996 4555668899999975432   1222221         12467889999996

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.97  E-value=14  Score=37.60  Aligned_cols=38  Identities=21%  Similarity=0.190  Sum_probs=33.4

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC  146 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~  146 (456)
                      ..|.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            46788888888899999999999999999999887764

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=86.03  E-value=18  Score=32.17  Aligned_cols=45  Identities=11%  Similarity=0.080  Sum_probs=25.6

Q ss_pred             eEEEECCC-CCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEE
Q 012799          364 NHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR  409 (456)
Q Consensus       364 ~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~  409 (456)
                      ..++++|. ...|+.++.++.|..-+ ..|+.-..+..+-..+.++.
T Consensus       344 ~~~~~~p~~~~~l~~g~~~g~l~~S~-D~G~tW~~~~~~lp~~~~v~  389 (394)
T 3b7f_A          344 QAMTADAHAPVGVYFGTTGGEIWASA-DEGEHWQCIASHLPHIYAVQ  389 (394)
T ss_dssp             BSEEECCSSSCCEEEECTTSCEEEES-STTSBCEEEECSCSCEEEEE
T ss_pred             EEEEECCCCCCEEEEEeCCCeEEEEC-CCCCCceEcccCCCCeeEEE
Confidence            35788874 34466666666555432 34555555554555677763

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=85.37  E-value=8.7  Score=35.93  Aligned_cols=75  Identities=11%  Similarity=0.030  Sum_probs=50.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCC------CCcc--cc---ccCcccceEEEEecccccCCCCCEEEEEe
Q 012799          150 KNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTG------KPSG--NP---LSGHKKWITGISWEPVHLNAPCRRFVSAS  217 (456)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~------~~~~--~~---~~~~~~~v~~~~~~~~~~~~~~~~l~~~~  217 (456)
                      ......+..+|||++++.++. +.++.++|++..      +...  ..   ...-.......+|.+     +|....+--
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-----~G~aYTtlf  396 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-----RGNAYTTLF  396 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-----SSEEEEEET
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-----CCceEeeee
Confidence            344567889999999988765 778999998742      1100  00   011123345677776     776666667


Q ss_pred             CCCcEEEEECCC
Q 012799          218 KDGDARIWDVSL  229 (456)
Q Consensus       218 ~dg~i~iwd~~~  229 (456)
                      -|..|.-|++..
T Consensus       397 idSqvvkWni~~  408 (638)
T 3sbq_A          397 IDSQVVKWNMEE  408 (638)
T ss_dssp             TTTEEEEEEHHH
T ss_pred             ecceEEEEeccH
Confidence            899999999864

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=85.07  E-value=40  Score=35.21  Aligned_cols=37  Identities=16%  Similarity=0.195  Sum_probs=30.8

Q ss_pred             EeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799          363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       363 v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  399 (456)
                      +.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            4445566788899999999999999999999988754

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.12  E-value=43  Score=34.09  Aligned_cols=38  Identities=16%  Similarity=0.178  Sum_probs=32.4

Q ss_pred             cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       362 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  399 (456)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677778888899999999999999999999887653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=81.03  E-value=33  Score=31.39  Aligned_cols=109  Identities=17%  Similarity=0.223  Sum_probs=59.7

Q ss_pred             CCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCC---Cccc---ccc-----CcccceEEEEecccccCCCCCEEEEEeC
Q 012799          151 NWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGK---PSGN---PLS-----GHKKWITGISWEPVHLNAPCRRFVSASK  218 (456)
Q Consensus       151 ~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~---~~~~---~~~-----~~~~~v~~~~~~~~~~~~~~~~l~~~~~  218 (456)
                      .....|+|.|+|. .|+++...|.|++++.....   .+..   ...     ........++++|.- ..++..+++-+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f-~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNY-KKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTH-HHHCEEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCC-cCCCEEEEEEeC
Confidence            4568899999996 56666789999999754321   1110   011     114567889999821 112334444332


Q ss_pred             C------------CcEEEEECCC----------CeEEEEec--CcCccEEEEEeCCCCeEEEEeCC
Q 012799          219 D------------GDARIWDVSL----------RKCVICLS--GHTLAVTCVKWGGDGVIYTGSQD  260 (456)
Q Consensus       219 d------------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~d  260 (456)
                      +            ..|.-|.+..          .+.+..+.  ........|+|.|||.|+.+..|
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            1            1344454431          23333332  22334678999999955554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	456
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-45
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-28
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-26
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-41
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-34
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-24
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-32
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-25
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-23
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-13
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-29
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-28
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-27
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-17
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-27
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-27
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-27
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-24
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-24
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-23
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-21
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-23
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-23
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-18
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-16
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-22
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-22
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-16
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-20
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-18
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-13
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-18
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-13
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-14
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	9e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.001
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-13
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	8e-11
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	1e-09
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-06
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	2e-05
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	6e-04
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	0.001
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  159 bits (402), Expect = 1e-45
 Identities = 77/361 (21%), Positives = 132/361 (36%), Gaps = 51/361 (14%)

Query: 96  PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
           P       ++GH   V  V F P    + S S D T+++WD  T        GH + V  
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64

Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
           I++   GK L S                                +   V +       VS
Sbjct: 65  ISFDHSGKLLASC------SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118

Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLI 274
           AS+D   ++W+V    CV   +GH   V  V+   DG +I + S D T++VW     +  
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178

Query: 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334
            EL+ H H V  ++ + E +  + +     +   S                G     L+S
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKS----------------GKPGPFLLS 222

Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394
           GS D T+ +W+ + +      + GH   V  V F   G+++ S + DK++++W+    + 
Sbjct: 223 GSRDKTIKMWDVS-TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281

Query: 395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLK 454
           +     H   V  +                            +   +  +++GS D T+K
Sbjct: 282 MKTLNAHEHFVTSL---------------------------DFHKTAPYVVTGSVDQTVK 314

Query: 455 V 455
           V
Sbjct: 315 V 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (276), Expect = 5e-28
 Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 27/191 (14%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
             C  T  GH E V  V  + DG  +AS S D TVR+W + T+    +   H++ V CI+
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192

Query: 158 W--------------------SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT 197
           W                       G  L+SGS+   ++ WD  TG      L GH  W+ 
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT-LVGHDNWVR 251

Query: 198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT 256
           G+ +         +  +S + D   R+WD   ++C+  L+ H   VT + +      + T
Sbjct: 252 GVLFHS-----GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 306

Query: 257 GSQDCTIKVWE 267
           GS D T+KVWE
Sbjct: 307 GSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (266), Expect = 1e-26
 Identities = 60/246 (24%), Positives = 97/246 (39%), Gaps = 53/246 (21%)

Query: 116 FSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175
             P+G  + S S D T+++W++ T   +   TGH+ WV  +  + DG  + S S    ++
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168

Query: 176 CWDPQTGKPSGNPLSGHKKWITGISWEP---------------VHLNAPCRRFVSASKDG 220
            W   T +     L  H+  +  ISW P                    P    +S S+D 
Sbjct: 169 VWVVATKECKAE-LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227

Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG 279
             ++WDVS   C++ L GH   V  V +   G  I + + D T++VW+    + ++ L  
Sbjct: 228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287

Query: 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339
           H H+V SL            F  T                            +V+GS D 
Sbjct: 288 HEHFVTSLD-----------FHKTAP-------------------------YVVTGSVDQ 311

Query: 340 TMFLWE 345
           T+ +WE
Sbjct: 312 TVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.0 bits (219), Expect = 2e-20
 Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           I      S +         +      G  L SGS D T+++WD++T   +    GH NWV
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             + + + GK ++S +    L+ WD +  +     L+ H+ ++T + +            
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT-LNAHEHFVTSLDFHKT-----APYV 304

Query: 214 VSASKDGDARIWD 226
           V+ S D   ++W+
Sbjct: 305 VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (171), Expect = 5e-14
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 17/128 (13%)

Query: 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402
            W P      K  ++GH+  V  V F P    + SAS D +IK+W+  TG F    +GH 
Sbjct: 2   EWIP--RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59

Query: 403 GPVYQI---------------RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG 447
             V  I                   ++ F+       +      +S  S   +   ++S 
Sbjct: 60  DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA 119

Query: 448 SKDSTLKV 455
           S+D T+K+
Sbjct: 120 SRDKTIKM 127

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  148 bits (373), Expect = 2e-41
 Identities = 69/331 (20%), Positives = 128/331 (38%), Gaps = 17/331 (5%)

Query: 71  LEKHKVSVEKVLSIVYQPQAVFRIRPVNR----CSATIAGHTEAVLSVAFSPDGRQLASG 126
           L+       K  +     Q    I PV R       T+ GH   + ++ +  D R L S 
Sbjct: 14  LKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSA 73

Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186
           S D  + +WD  T   +       +WV+  A++  G ++  G        ++ +T + + 
Sbjct: 74  SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133

Query: 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV 246
                       +S      +           D    +WD+   +     +GHT  V  +
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSS---GDTTCALWDIETGQQTTTFTGHTGDVMSL 190

Query: 247 KWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTG 304
               D  ++ +G+ D + K+W+  +G   +   GH   +N++       A  TG+ D T 
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250

Query: 305 KQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAVSKQPKTRMT 357
           + +    + +       N I G        +   L++G DDF   +W+ A+       + 
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRAGVLA 309

Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
           GH   V+ +  + DG  VA+ S+D  +K+WN
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.9 bits (203), Expect = 5e-18
 Identities = 47/252 (18%), Positives = 83/252 (32%), Gaps = 28/252 (11%)

Query: 231 KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLAL 289
           +    L GH   +  + WG D  ++ + SQD  + +W++     +  +     WV + A 
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 290 STEYALRTGAFDHTGKQYSSPEEMK---------KAALERYNKIKGNAPERLVSGSDDFT 340
           +                  + +  +                +  +     ++V+ S D T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400
             LW+    +Q  T        V  +  +PD +   S + D S KLW+   G     F G
Sbjct: 166 CALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224

Query: 401 HVGPVYQIRF-----------------ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443
           H   +  I F                             Y   ++ C ++  S+S   RL
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284

Query: 444 LLSGSKDSTLKV 455
           LL+G  D    V
Sbjct: 285 LLAGYDDFNCNV 296

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 17/133 (12%), Positives = 44/133 (33%), Gaps = 1/133 (0%)

Query: 311 EEMKKAALERYNKIK-GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS 369
           +++++ A +  N+I+         + S           +  + +  + GH   +  +++ 
Sbjct: 5   DQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWG 64

Query: 370 PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS 429
            D + + SAS D  + +W+  T   V         V    +     +        +  + 
Sbjct: 65  TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124

Query: 430 CCMSLYSWSADSR 442
              +       SR
Sbjct: 125 NLKTREGNVRVSR 137

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (323), Expect = 2e-34
 Identities = 60/334 (17%), Positives = 113/334 (33%), Gaps = 47/334 (14%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
           +    + GH + V++      G ++ SGS D T+++W   T   +    GH   V     
Sbjct: 7   KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 65

Query: 159 SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP--------------- 203
             +     S  +  ++   +      +    +   + +                      
Sbjct: 66  RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 125

Query: 204 ---------------VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
                            +    RR VS + D   ++WD     C+  L GHT  V  +++
Sbjct: 126 TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 185

Query: 249 GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308
            G   + +GS D +I+VW+   G  I  L GH    + + L     L +G  D T K + 
Sbjct: 186 DGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI-LVSGNADSTVKIWD 243

Query: 309 SPEEMKKAALERYNKIKGN------APERLVSGSDDFTMFLWEPAVSKQPKT----RMTG 358
                    L+  NK +            +++ SDD T+ LW+    +  +        G
Sbjct: 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 303

Query: 359 HQQLVNHVYFSPDGQWVASASFDKS----IKLWN 388
              +V  +  S      A  S + +    + + +
Sbjct: 304 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (250), Expect = 3e-24
 Identities = 73/362 (20%), Positives = 127/362 (35%), Gaps = 72/362 (19%)

Query: 135 WDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK 194
           W            GH + V+       G  +VSGS    L+ W   TGK     L GH  
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-LVGHTG 58

Query: 195 WITGISWEP---------------------------------VHLNAPCRRFVSASKDGD 221
            +                                          ++   +R VS S+D  
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118

Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
            R+WD+   +C+  L GH  AV CV++ G  V+   + D  +KVW+      +  L+GH 
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG-AYDFMVKVWDPETETCLHTLQGHT 177

Query: 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA---PERLVSGSDD 338
           + V SL     + + +G+ D + + +          L  +  +          LVSG+ D
Sbjct: 178 NRVYSLQFDGIHVV-SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD 236

Query: 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398
            T+ +W+    +  +T    ++          +  +V ++S D ++KLW+  TG+F+   
Sbjct: 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 296

Query: 399 R-----GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453
                 G  G V++I                             S    +   GS++ T 
Sbjct: 297 VTLESGGSGGVVWRI---------------------------RASNTKLVCAVGSRNGTE 329

Query: 454 KV 455
           + 
Sbjct: 330 ET 331

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 6e-10
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 16/138 (11%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV-LCI 156
             C  T+ GH      +    +   L SG+ D+TV++WD+ T   +    G         
Sbjct: 207 GNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 264

Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKP----SGNPLSGHKKWITGISWEPVHLNAPCRR 212
               +   +++ S  G ++ WD +TG+           G    +  I             
Sbjct: 265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-----TKLV 319

Query: 213 FVSASKDGDA----RIWD 226
               S++G       + D
Sbjct: 320 CAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 7e-07
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 91  VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--- 147
           ++ I+           +           +   + + S D TV+LWDL T   +       
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300

Query: 148 --GHKNWVLCIAWSADGKHLVSGSKAG----ELQCWD 178
             G    V  I  S        GS+ G    +L   D
Sbjct: 301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 4/37 (10%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTT----VRLWDLN 138
           G    V  +  S      A GS + T    + + D +
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  123 bits (308), Expect = 8e-32
 Identities = 70/377 (18%), Positives = 132/377 (35%), Gaps = 81/377 (21%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK------------------CT 147
            HT  V  V FS DG  LA+G  + T +++ ++  + + +                    
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
               ++  + +S DGK L +G++   ++ WD +  K                    +   
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV------MILQGHEQDIYSLDYF 172

Query: 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
               + VS S D   RIWD+   +C + LS      T     GDG  I  GS D  ++VW
Sbjct: 173 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 232

Query: 267 ETTQGKLIRELK-------GHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPEEMKKAAL 318
           ++  G L+  L        GH   V S+  +    ++ +G+ D + K ++      K+  
Sbjct: 233 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD- 291

Query: 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378
                                     +   S   +    GH+  V  V  + + +++ S 
Sbjct: 292 -------------------------SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 326

Query: 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS 438
           S D+ +  W+  +G  + + +GH   V  +                        +  S  
Sbjct: 327 SKDRGVLFWDKKSGNPLLMLQGHRNSVISV---------------------AVANGSSLG 365

Query: 439 ADSRLLLSGSKDSTLKV 455
            +  +  +GS D   ++
Sbjct: 366 PEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (256), Expect = 8e-25
 Identities = 65/307 (21%), Positives = 109/307 (35%), Gaps = 45/307 (14%)

Query: 96  PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
           P N  +++       + SV FSPDG+ LA+G+ D  +R+WD+  +  +    GH+  +  
Sbjct: 109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168

Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
           + +   G  LVSGS    ++ WD +TG+ S          I              +   +
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCS------LTLSIEDGVTTVAVSPGDGKYIAA 222

Query: 216 ASKDGDARIWDV-------SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE 267
            S D   R+WD         L       +GH  +V  V +  DG  + +GS D ++K+W 
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

Query: 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327
                   + K        +                  +Y                    
Sbjct: 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-------------------- 322

Query: 328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY------FSPDGQWVASASFD 381
               ++SGS D  +  W+   S  P   + GH+  V  V         P+    A+ S D
Sbjct: 323 ----ILSGSKDRGVLFWDKK-SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377

Query: 382 KSIKLWN 388
              ++W 
Sbjct: 378 CKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.9 bits (242), Expect = 6e-23
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 14/156 (8%)

Query: 85  VYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----- 139
           V+  +  F +  ++  + +  GH ++V SV F+ DG+ + SGS D +V+LW+L       
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290

Query: 140 -------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGH 192
                   T      GHK++VL +A + + ++++SGSK   +  WD ++G P    L GH
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM-LQGH 349

Query: 193 KKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDV 227
           +  +  ++        P    F + S D  ARIW  
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (167), Expect = 3e-13
 Identities = 47/330 (14%), Positives = 98/330 (29%), Gaps = 63/330 (19%)

Query: 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC----VICLSGHTLA 242
           N  + H K I     +    + P    +    +    +++ +L +     +     HT  
Sbjct: 7   NQRANHSKPIPPFLLDLDSQSVP--DALKKQTNDYYILYNPALPREIDVELHKSLDHTSV 64

Query: 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-------LSTEYAL 295
           V CVK+  DG       + T +V+  + G L+  L                   S++  +
Sbjct: 65  VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 124

Query: 296 RTGAFDHTGKQYSS----------------PEEMKKAALERYNKIKGNAPERLVSGSDDF 339
           R+  F   GK  ++                   + +   +    +        +      
Sbjct: 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 184

Query: 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----- 394
                    + Q    ++    +        DG+++A+ S D+++++W+  TG       
Sbjct: 185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 244

Query: 395 --VAVFRGHVGPVYQIRF------------------------ELIYCFRYPSNFYCVVDM 428
                  GH   VY + F                              + P++  C V  
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 429 SCCMSLY---SWSADSRLLLSGSKDSTLKV 455
                     + + +   +LSGSKD  +  
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLF 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score =  114 bits (285), Expect = 5e-29
 Identities = 33/358 (9%), Positives = 77/358 (21%), Gaps = 58/358 (16%)

Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHL-VSGSKA 171
            A       +   +    + + D+ + T    C    K        + D +   V  +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK 231
           G++   D  T K + +          G S     ++   +   +             ++ 
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 232 CVICL--------------SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL 277
             + +                    V  ++   DG +Y    D      +   GK    L
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI--YKMDVKTGKYTVAL 179

Query: 278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337
               +W      +                +       + ++        +  +   +   
Sbjct: 180 PLR-NWNRKGYSA----------PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228

Query: 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV 397
            +     +    K          +L      SP          +  +  ++    K +  
Sbjct: 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKA 287

Query: 398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                   Y + F                                 L  G   + L V
Sbjct: 288 A-NLDHTYYCVAF---------------------------DKKGDKLYLGGTFNDLAV 317

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP 142
                  VAF   G +L  G     + +++ +T   
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 325

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (284), Expect = 2e-28
 Identities = 55/400 (13%), Positives = 111/400 (27%), Gaps = 73/400 (18%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT------GHKNWVLCIAW- 158
            H   + SV+         S SGD  +++WD                  HK+ +  +   
Sbjct: 12  AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 159 ------SADGKHLVSGSKAGELQCWDPQTGKPSGNPL---------SGHKKWITGISWEP 203
                 + +   + + S +G+L  +       +   +            K     + W  
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 204 VHLNAPCRRFVSASKDGDARIWDV------------------SLRKCVICLSGHTLAVTC 245
            +      R V+    G   IW                     L+  V      +   T 
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 246 VKWGGDGVIYTGSQDCTIKVWE------TTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
           V     G+I TG  + T+++ E          +    +  + + + S+  S + +L   A
Sbjct: 190 VDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249

Query: 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359
            D       +  E +                       +    L  P  S Q       H
Sbjct: 250 HDSNSFGCITLYETEF---------------------GERIGSLSVPTHSSQASLGEFAH 288

Query: 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY----C 415
              V  + F+  G+ + SA +D  ++ W+  T + +     H   +      L       
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348

Query: 416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                  + V  +         +  +  L     D +++ 
Sbjct: 349 SLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 388

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 3e-11
 Identities = 32/210 (15%), Positives = 62/210 (29%), Gaps = 31/210 (14%)

Query: 97  VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM------FKCTGHK 150
           +     +    ++   SV  S  G  +A+G  + TV++ +L+T  P+           + 
Sbjct: 173 LQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNS 231

Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCW---------------DPQTGKPSGNPLSGHKKW 195
           N +  + +S  G  L     +    C                 P     +      H  W
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291

Query: 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV----TCVKWGGD 251
           +  +S+             SA  DG  R WDV  ++ +  L+ H   +      +     
Sbjct: 292 VMSLSFND-----SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 346

Query: 252 GVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
           G          +K  +      +       
Sbjct: 347 GDSLAEPGVFDVKFLKKGWRSGMGADLNES 376

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 9e-09
 Identities = 22/240 (9%), Positives = 54/240 (22%), Gaps = 52/240 (21%)

Query: 232 CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLALS 290
                  H   +  V       + + S D  +KVW+           K + H+V+   L 
Sbjct: 6   TANAGKAHDADIFSVSACNSFTV-SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350
               L+    D                              + + S    +  +      
Sbjct: 65  HVDVLQAIERDAFELCL------------------------VATTSFSGDLLFYRITRED 100

Query: 351 QPKT---------RMTGHQQLVNHVYFSPDG-----QWVASASFDKSIKLWN-GTTGKFV 395
           + K               +     + +           + +     +  +W         
Sbjct: 101 ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160

Query: 396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                +  P  +++  +            V            S    L+ +G  + T+++
Sbjct: 161 NSLTLNWSPTLELQGTVESPMTPSQFATSV----------DISERG-LIATGFNNGTVQI 209

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 1e-27
 Identities = 67/301 (22%), Positives = 115/301 (38%), Gaps = 29/301 (9%)

Query: 103 TIAGHTEAVLSV-AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD 161
            I   +E    V     D +++ SG  D T+++WD NT       TGH   VLC+ +   
Sbjct: 7   RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 66

Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
                       +      T +            +       +HL       V+ SKD  
Sbjct: 67  VI----------ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS 116

Query: 222 ARIWDVSLRKCV---ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK 278
             +WD++    +     L GH  AV  V +     I + S D TIKVW T+  + +R L 
Sbjct: 117 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY-IVSASGDRTIKVWNTSTCEFVRTLN 175

Query: 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI---KGNAPERLVSG 335
           GH   +  L       + +G+ D+T + +          LE + ++        +R+VSG
Sbjct: 176 GHKRGIACLQYRDRL-VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSG 234

Query: 336 SDDFTMFLWEPAVSKQPKT--------RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
           + D  + +W+   +  P+          +  H   V  +    D   + S+S D +I +W
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL--QFDEFQIVSSSHDDTILIW 292

Query: 388 N 388
           +
Sbjct: 293 D 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (192), Expect = 7e-17
 Identities = 45/238 (18%), Positives = 85/238 (35%), Gaps = 14/238 (5%)

Query: 231 KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290
           + + C S  +  V C+++     I +G +D TIK+W+    +  R L GH   V  L   
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQ-KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64

Query: 291 TEYALRTGAFDHTGKQY--SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348
               +   +          +                       +V+ S D ++ +W+ A 
Sbjct: 65  ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
                 R               D +++ SAS D++IK+WN +T +FV    GH   +  +
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 184

Query: 409 RFE-----------LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
           ++             I  +         V       +     D++ ++SG+ D  +KV
Sbjct: 185 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 242

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 11/95 (11%)

Query: 93  RIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT---------QTPM 143
           R+  +   +          L      D +++ SG+ D  +++WDL              +
Sbjct: 201 RLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260

Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
                H   V  + +  D   +VS S    +  WD
Sbjct: 261 RTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 2e-27
 Identities = 45/293 (15%), Positives = 84/293 (28%), Gaps = 17/293 (5%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSA 160
            H E V +V  S   R + +G     V++WD++            C    N++       
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220
           DG  L+ G +A  L  WD     P                +           F   S   
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKA---ELTSSAPACYALAISPDSKVCFSCCSDGN 164

Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGH 280
            A     +             A           ++TG  D T++ W+  +G+ +++    
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDF 223

Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP-----ERLVSG 335
              + SL             + +  +     +  K  L  +     +       +  VS 
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST 283

Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
             D  +  W            +     V     S D +++ + S DK   ++ 
Sbjct: 284 GKDNLLNAWR--TPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 7e-12
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 8/122 (6%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL 165
             T  + S+ + P G  LA G   + V +  +N          H++ VL + ++  GK  
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWF 280

Query: 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225
           VS  K   L  W    G       S     +              +  V+ S D  A ++
Sbjct: 281 VSTGKDNLLNAWRTPYGASIF--QSKESSSVLSCDISV-----DDKYIVTGSGDKKATVY 333

Query: 226 DV 227
           +V
Sbjct: 334 EV 335

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  109 bits (273), Expect = 2e-27
 Identities = 29/340 (8%), Positives = 70/340 (20%), Gaps = 34/340 (10%)

Query: 93  RIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGD--TTVRLWDLNTQTPMFKCTGHK 150
            I+ V+            +  V    D +            + ++D  T     K   + 
Sbjct: 27  FIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENL 85

Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP-----VH 205
             V  +    +       +                       +  IT  +         +
Sbjct: 86  GNVFAMGVDRN-GKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY 144

Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265
                             ++D+  RK     + ++             +Y  S       
Sbjct: 145 GFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPS 204

Query: 266 WETTQGKL-------IRELKGHGHWVNSLALSTEYA-LRTGAFDHTGKQ----------- 306
            +                +       N   L         G +D                
Sbjct: 205 PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG 264

Query: 307 -YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
            Y     ++ + L     + G          +   +  ++         ++T  +  +  
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-----TRKVTEVKNNLTD 319

Query: 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
           +  S D + V     D  I  +     +          P+
Sbjct: 320 LRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  109 bits (272), Expect = 3e-27
 Identities = 51/334 (15%), Positives = 115/334 (34%), Gaps = 32/334 (9%)

Query: 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD 161
            T+ GH  +V++     +   + +G+ D  +R++D   +  + + +GH   V  + ++  
Sbjct: 6   TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64

Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
           G  LVSGS    ++ WD + G  +       +   + +    +      +  V+ S+D  
Sbjct: 65  G-ILVSGSTDRTVRVWDIKKGCCTHV----FEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119

Query: 222 ARIWDVSLRKCVICLSG-----------------------HTLAVTCVKWGGDGVIYTGS 258
             +W +     V                            H  +V  V   G+ ++ +GS
Sbjct: 120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN-IVVSGS 178

Query: 259 QDCTIKVWETTQGKLIRELKGHGH-WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317
            D T+ VW+  Q K +  L GH     +++         + + D T + +          
Sbjct: 179 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 238

Query: 318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS 377
           L+ +  + G                      +     + + H   ++ +        +  
Sbjct: 239 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 298

Query: 378 ASFDKSIKLWNGTTGKFV-AVFRGHVGPVYQIRF 410
           +  +    ++N  +GK V A        ++ + F
Sbjct: 299 SGSENQFNIYNLRSGKLVHANILKDADQIWSVNF 332

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 2e-08
 Identities = 10/133 (7%), Positives = 32/133 (24%), Gaps = 1/133 (0%)

Query: 135 WDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK 194
                 T       +   +  +        L+  S    +      + +         K 
Sbjct: 218 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF 277

Query: 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDGV 253
                +   +         + +  +    I+++   K V   +      +  V + G  +
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL 337

Query: 254 IYTGSQDCTIKVW 266
           +    +D    + 
Sbjct: 338 VAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (124), Expect = 5e-08
 Identities = 10/102 (9%), Positives = 31/102 (30%), Gaps = 6/102 (5%)

Query: 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187
                 +   +      K + H   +  I       +++      +   ++ ++GK    
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 318

Query: 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229
            +      I  ++++   L        +  KDG + +  +  
Sbjct: 319 NILKDADQIWSVNFKGKTL------VAAVEKDGQSFLEILDF 354

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 19/90 (21%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
              +++G+DD  + +++   +K+   +++GH   V  + ++  G  + S S D+++++W+
Sbjct: 23  DNYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 80

Query: 389 GTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418
              G    VF GH   V  +        +Y
Sbjct: 81  IKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 110

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 91  VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN 138
           ++ +R      A I    + + SV F      +A+   D    L  L+
Sbjct: 307 IYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (252), Expect = 1e-24
 Identities = 41/357 (11%), Positives = 88/357 (24%), Gaps = 52/357 (14%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC---TGHKNWVLCIAWSAD- 161
              + +  +   P    L   S D ++ ++  + Q           +K+ +LC  +  + 
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
              +  G+  GE+   D           +           +          +    +  D
Sbjct: 69  DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128

Query: 222 AR--IWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG 279
            R     V   K +   +                +  G  +  ++ +     +       
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188

Query: 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339
                                    + Y+      + A+E ++              DD+
Sbjct: 189 ESGLKY-------QIRDVALLPKEQEGYACSSIDGRVAVEFFD-----------DQGDDY 230

Query: 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399
                      +   + T     VN + FSP  +++ +A  D  I  WN  T K +  F 
Sbjct: 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290

Query: 400 GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456
                                            S+   +    +L   + D T K  
Sbjct: 291 KF----------------------------NEDSVVKIACSDNILCLATSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 5e-09
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 6/99 (6%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
           +R +         V S+ FSP  + L +   D  +  W+L T+  +       N    + 
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVK 299

Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI 196
            +     L   +     +             +  +   I
Sbjct: 300 IACSDNILCLATSDDTFKTN-----AAIDQTIELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 7/64 (10%), Positives = 20/64 (31%), Gaps = 4/64 (6%)

Query: 231 KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK---GHGHWVNS 286
           + V         ++ +K      ++   S D ++ V++        +L     + H +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 287 LALS 290
               
Sbjct: 62  CNFI 65

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score =  101 bits (253), Expect = 2e-24
 Identities = 28/334 (8%), Positives = 67/334 (20%), Gaps = 57/334 (17%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLA----------SGSGDTTVRLWDLNTQTPMFKCT 147
                   G   ++        G   A           G     V ++D  T  P+    
Sbjct: 56  GVTLGHSLGAFLSL--AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE 113

Query: 148 GHKNWVLC-------IAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199
                          I   A    L      +                      K  +  
Sbjct: 114 LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-----DQLTKSASCF 168

Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC------LSGHTLAVTCVKWGGDG- 252
              P             S        D++                   +    +    G 
Sbjct: 169 HIHP----GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM 224

Query: 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312
           +++  +              +   + G+     +    +          +T        E
Sbjct: 225 LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284

Query: 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372
             ++ L                            +V +       GH    + +  + DG
Sbjct: 285 HSRSCLAAAENTS-----------------SVTASVGQTSGPISNGHD--SDAIIAAQDG 325

Query: 373 QW--VASASFDKSIKLWNGTTGKFVAVFRGHVGP 404
                A+++  + + +++  + +  +      GP
Sbjct: 326 ASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.2 bits (245), Expect = 2e-23
 Identities = 37/332 (11%), Positives = 82/332 (24%), Gaps = 32/332 (9%)

Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKH 164
             E +   A++ D  Q+A    +  V +++ +    +       H   V  + W+ D   
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 165 LVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
           +V+         W  +         +    +    + W P                    
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL---------- 273
             +       I     +  ++        ++  GS D   +++     ++          
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 274 --------IRELKGHGHWVNSLALSTEYALRTGAFDH------TGKQYSSPEEMKKAALE 319
                   + E      WV+ +  S   +                 +  +   +    L 
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245

Query: 320 RYNKIKGNAPERLVSGSDDFTM-FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378
                       + +G D F + F ++   S   K    G   +                
Sbjct: 246 LLAVTFITESSLVAAGHDCFPVLFTYD---SAAGKLSFGGRLDVPKQSSQRGLTARERFQ 302

Query: 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410
           + DK      G+      +   H   V QI  
Sbjct: 303 NLDKKASSE-GSAAAGAGLDSLHKNSVSQISV 333

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.8 bits (226), Expect = 6e-21
 Identities = 40/323 (12%), Positives = 94/323 (29%), Gaps = 30/323 (9%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCI 156
                +  H   V  V ++PD  ++ +   D    +W L  +   P            C+
Sbjct: 42  VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV 101

Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
            W+ + K    GS +  +     +            K   + +     H         + 
Sbjct: 102 RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH--PNSVLLAAG 159

Query: 217 SKDGDARIWDVSLRK------------------CVICLSGHTLAVTCVKWGGDGVIYT-G 257
           S D   RI+   +++                   +   S     V  V +  +G      
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219

Query: 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317
           S D T+ + +  +   +  L      + ++   TE +L     D     ++      K +
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLS 279

Query: 318 LERYNKIKGNAPERLVSGSDDFT---MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW 374
                 +   + +R ++  + F            +       + H+  V+ +     G+ 
Sbjct: 280 FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA 339

Query: 375 ----VASASFDKSIKLWNGTTGK 393
                 +   D  + +W+  + +
Sbjct: 340 KCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.0 bits (164), Expect = 5e-13
 Identities = 45/294 (15%), Positives = 80/294 (27%), Gaps = 39/294 (13%)

Query: 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITGISWEPVH 205
           +     + C AW+ D   +       E+  ++    K    + L  H   +TG+ W P  
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCV---ICLSGHTLAVTCVKWGGDGVIYTGSQDCT 262
                 R V+   D +A +W +  R      + L  +  A        +     GS    
Sbjct: 64  -----NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 118

Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTE-------------------YALRTGAFDHT 303
           I +    Q       K     + S  LS +                   ++      +  
Sbjct: 119 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 178

Query: 304 GKQYSSPEEMKKAALERYNKIKGNA---------PERLVSGSDDFTMFLWEPAVSKQPKT 354
                   +M    L   +                 R+   S D T+ L +        T
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 238

Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
             +     +  V F  +   VA+   D    L+   +      F G +    Q 
Sbjct: 239 LASETLP-LLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQS 290

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.9 bits (143), Expect = 2e-10
 Identities = 37/206 (17%), Positives = 65/206 (31%), Gaps = 16/206 (7%)

Query: 80  KVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT 139
           K +     P       P        +     V  V FS +G ++A  S D+TV L D + 
Sbjct: 173 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK 232

Query: 140 QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE-LQCWDPQTGKPSGNPLSGHKKWITG 198
           +  +         +L + +  +   + +G      L  +D   GK S     G       
Sbjct: 233 KMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLS---FGGRLDVPKQ 289

Query: 199 ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-----V 253
            S   +       R    + D  A     S        S H  +V+ +     G      
Sbjct: 290 SSQRGLT-----ARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQ 343

Query: 254 IYTGSQDCTIKVWE-TTQGKLIRELK 278
             T   D  + +W+  +    +++LK
Sbjct: 344 FCTTGMDGGMSIWDVRSLESALKDLK 369

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 96.5 bits (238), Expect = 6e-23
 Identities = 41/316 (12%), Positives = 76/316 (24%), Gaps = 22/316 (6%)

Query: 86  YQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK 145
           +   A+F   P      T  G     + +  +P G ++   +G + V    + + T    
Sbjct: 3   FSQTALFPSLP-----RTARGT---AVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEI 53

Query: 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS---------GNPLSGHKKWI 196
            T H +       S  G +  SG   G ++ WD                G          
Sbjct: 54  YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 113

Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT 256
           +                                R         +     +    D  +  
Sbjct: 114 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 173

Query: 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316
                        +         +    +  A +             G +    E+    
Sbjct: 174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 233

Query: 317 ALERYNKIKGNAP----ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372
            +     + G        ++ S S D T+ +W  A  K  KT   G +     +      
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK 293

Query: 373 QWVASASFDKSIKLWN 388
           Q + S S +  I   N
Sbjct: 294 QALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.6 bits (137), Expect = 9e-10
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN-WVLCIAWSADGKHLVSGSKAGE 173
            +SPDG ++AS S D T+++W++ T                 +      + LVS S  G 
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 174 LQCWDP 179
           +   +P
Sbjct: 305 INFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.4 bits (121), Expect = 9e-08
 Identities = 34/263 (12%), Positives = 67/263 (25%), Gaps = 14/263 (5%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
              +     H+        SP G   ASG     VR+WD    T + K T          
Sbjct: 48  LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 107

Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
            S D +     +     + +       +G            ++      + P R    + 
Sbjct: 108 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 167

Query: 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL 277
            +  A       +             +        +  +   D TI ++    G      
Sbjct: 168 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 227

Query: 278 KGH--------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA- 328
           +          G             + + + D T K ++      +  +    +I+    
Sbjct: 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287

Query: 329 -----PERLVSGSDDFTMFLWEP 346
                 + LVS S +  +    P
Sbjct: 288 GIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 14/110 (12%), Positives = 30/110 (27%), Gaps = 4/110 (3%)

Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
           +++   +   +++      S       T H         SP G + AS     ++++W+ 
Sbjct: 30  DKIQYCNGT-SVYTVPVG-SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT 87

Query: 390 TTG--KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437
           T              GPV  I ++                    +     
Sbjct: 88  TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 97.2 bits (240), Expect = 8e-23
 Identities = 32/323 (9%), Positives = 75/323 (23%), Gaps = 37/323 (11%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLA----------SGSGDTTVRLWDLNTQTPMFKCT 147
            R    I G    + +   + DG  +A           G     V ++D  T  P     
Sbjct: 38  GRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE 95

Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
                   +        L    K      + P       +      K +  +        
Sbjct: 96  LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP 155

Query: 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW-------GGDGVIYTGSQD 260
                F    +DG                                      G +   +  
Sbjct: 156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT 215

Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
             I   + + G                         T A    G +    +++       
Sbjct: 216 GKIHQIDLSSGDAKFLPAVEAL--------------TEAERADGWRPGGWQQVAYHRALD 261

Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW--VASA 378
              +  +  +     +    + + +    ++      GH+  ++ +  S D +    A +
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE--IDSINVSQDEKPLLYALS 319

Query: 379 SFDKSIKLWNGTTGKFVAVFRGH 401
           + DK++ + +  +G+ +      
Sbjct: 320 TGDKTLYIHDAESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 82.1 bits (201), Expect = 9e-18
 Identities = 31/320 (9%), Positives = 77/320 (24%), Gaps = 32/320 (10%)

Query: 109 EAVLSVAFSPDGRQL-----ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
           E  +  A +PD R++     A  +  T   + D      +    G   ++     + DG 
Sbjct: 2   EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGS 59

Query: 164 HL----------VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
            +            G +   ++ +DP T  P+ +            ++  +    P  + 
Sbjct: 60  FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 119

Query: 214 V---SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ 270
           +     S      + D+  +     L         +        +   +D ++       
Sbjct: 120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH--IFPTAPDTFFMHCRDGSLAKVAFGT 177

Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330
                             L    A            + +                     
Sbjct: 178 EGTPEITHTEVFHPEDEFLINHPAYSQ---KAGRLVWPTYTGKIHQIDLSSGDA------ 228

Query: 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
           + +   +  T              ++  H+ L                +  + + + +  
Sbjct: 229 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK 288

Query: 391 TGKFVAVFRGHVGPVYQIRF 410
           TG+ +A F      +  I  
Sbjct: 289 TGERLAKFEMG-HEIDSINV 307

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 76.8 bits (187), Expect = 5e-16
 Identities = 24/217 (11%), Positives = 54/217 (24%), Gaps = 26/217 (11%)

Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMFKCTGHKNW 152
            R ++         T          DG         + T  +       P       +  
Sbjct: 142 KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFL 196

Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVH------ 205
           +   A+S     LV  +  G++   D  +G       +    +      W P        
Sbjct: 197 INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 256

Query: 206 ---------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---V 253
                    L      +   +      + D    + +         +  +    D    +
Sbjct: 257 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLL 315

Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290
               + D T+ + +   G+ +R +   GH    +  +
Sbjct: 316 YALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA 352

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 20/170 (11%), Positives = 43/170 (25%), Gaps = 27/170 (15%)

Query: 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADG 162
                 +   A+S    +L   +    +   DL++    F               W   G
Sbjct: 191 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG 250

Query: 163 KHLVSGSK--------------------AGELQCWDPQTGKPSGNPLSGHKKWITGISWE 202
              V+  +                    +  +   D +TG+       GH   I  I+  
Sbjct: 251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVS 308

Query: 203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG 252
               +     +  ++ D    I D    + +  ++        +     G
Sbjct: 309 Q---DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.0 bits (115), Expect = 5e-07
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQL--ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
               A        + S+  S D + L  A  +GD T+ + D  +   +       +    
Sbjct: 290 GERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQV 348

Query: 156 IAWSADG 162
           I  +  G
Sbjct: 349 ITTADMG 355

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.5 bits (230), Expect = 5e-22
 Identities = 33/308 (10%), Positives = 77/308 (25%), Gaps = 42/308 (13%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
           +    TI+GH + + ++  +P    L SGS D  +  W  ++         H N ++ + 
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLD 53

Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
            S   ++                                   S   V            +
Sbjct: 54  NSKAQEYSSISWDDTLKVNGIT---------------KHEFGSQPKVASANNDGFTAVLT 98

Query: 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL 277
            D D  I        +  +  ++             +     +       +         
Sbjct: 99  NDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK 158

Query: 278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK------------ 325
                  + +++S                    +  +        +              
Sbjct: 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 218

Query: 326 -----GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
                    + + +GS D  +F++      +    +  H+  VN++ +      + S+  
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGA 277

Query: 381 DKSIKLWN 388
           D  IK WN
Sbjct: 278 DACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.6 bits (129), Expect = 7e-09
 Identities = 11/93 (11%), Positives = 26/93 (27%), Gaps = 6/93 (6%)

Query: 135 WDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK 194
                 + +   +             +   + +GS    +  +  +        L+ HK 
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227
            +  + W            VS+  D   + W+V
Sbjct: 260 GVNNLLW------ETPSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (109), Expect = 2e-06
 Identities = 6/46 (13%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 91  VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
           ++ ++   +    +  H + V ++ +      L S   D  ++ W+
Sbjct: 241 IYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 93.5 bits (230), Expect = 7e-22
 Identities = 40/294 (13%), Positives = 83/294 (28%), Gaps = 4/294 (1%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIA 157
                  GH +A+ +++ S DG+ L S   +  +  WD++T          H   +  I 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 158 WSADGKHLVSGSKAGELQCWDPQTG-KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
            ++ G                  +G   S    +       G++       A    +   
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 217 SKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIR 275
           +     ++ +V +     C++  +      V      V        ++   +T       
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335
                 +    L  + +             + +          +           RL +G
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242

Query: 336 SDDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
           S D ++ +W     S  P      H     +     +   + SA  D +IK WN
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 77.3 bits (188), Expect = 2e-16
 Identities = 45/310 (14%), Positives = 77/310 (24%), Gaps = 27/310 (8%)

Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
           GH   +  ++ SADGK L S    G +  WD  TG  +      H   ITGI        
Sbjct: 10  GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 208 APC--RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265
                   +     G + +         +      LAV+          Y      +   
Sbjct: 70  FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129

Query: 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325
                           +    +A+  + +                  +  A +       
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189

Query: 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
             A       S     +              T H   V  V +SPD   +A+ S D S+ 
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249

Query: 386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL 445
           +WN        +       +  +                               +   ++
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNS-------------------------VIWLNETTIV 284

Query: 446 SGSKDSTLKV 455
           S  +DS +K 
Sbjct: 285 SAGQDSNIKF 294

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.2 bits (141), Expect = 2e-10
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQIRFELIY 414
             GH + +  +  S DG+ + SA  +  I  W+ +TG    VF   H   +  I+     
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67

Query: 415 CFRYPSNFYCVVDMSCCMSLYSW 437
                S    +  +    S    
Sbjct: 68  DLFTVSWDDHLKVVPAGGSGVDS 90

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 5/43 (11%), Positives = 17/43 (39%)

Query: 95  RPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL 137
           +P +        H  + ++     +   + S   D+ ++ W++
Sbjct: 255 KPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 1e-04
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 8/96 (8%)

Query: 135 WDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK--PSGNPLSGH 192
            +          T H   V C++WS D   L +GS    +  W+       P     +  
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268

Query: 193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
              +  + W            VSA +D + + W+V 
Sbjct: 269 MSSVNSVIW------LNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 13/167 (7%), Positives = 37/167 (22%), Gaps = 36/167 (21%)

Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330
           G + +   GH   + +L+ S +                                     +
Sbjct: 2   GSIDQVRYGHNKAITALSSSAD------------------------------------GK 25

Query: 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
            L S   +  +  W+ +     +     H  ++  +  +  G     +  D    +  G 
Sbjct: 26  TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 85

Query: 391 TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437
           +G   +    +      +   +                       + 
Sbjct: 86  SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE 132

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 88.7 bits (218), Expect = 5e-20
 Identities = 26/326 (7%), Positives = 59/326 (18%), Gaps = 48/326 (14%)

Query: 123 LASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDP 179
           + + +    + + D        +          +    +  G+    + +K+  L   D 
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI------------WDV 227
            TG+  G             S     L+   +            +            +D 
Sbjct: 64  VTGETLGRI-DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWV-NS 286
                                     +Y   +D  +   E   G L+ +           
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEA--GTLVEDKPIQSWEAETY 180

Query: 287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------------------- 326
                                           +      G                    
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240

Query: 327 -------NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
                    P +  +      +  ++   +   K     H      V  S DG  V    
Sbjct: 241 VFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHS--YYSVNVSTDGSTVWLGG 298

Query: 380 FDKSIKLWNGTTGKFVAVFRGHVGPV 405
               +  ++  T +            
Sbjct: 299 ALGDLAAYDAETLEKKGQVDLPGNAS 324

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.8 bits (161), Expect = 1e-12
 Identities = 22/204 (10%), Positives = 51/204 (25%), Gaps = 30/204 (14%)

Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-------------------- 146
               +  +A++ DG +L     D  V   +  T                           
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 147 -TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
            +             D       +    L   D +TG+ +   +     +    +  P  
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIK 264
                    +         +D+     +  +     +   V    DG  ++ G     + 
Sbjct: 253 -------TRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLA 304

Query: 265 VWETTQGKLIRELKGHGHWVNSLA 288
            ++    +   ++   G+   SLA
Sbjct: 305 AYDAETLEKKGQVDLPGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (122), Expect = 6e-08
 Identities = 14/144 (9%), Positives = 28/144 (19%), Gaps = 10/144 (6%)

Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHL 165
              A        D       +  T +   DL T     +       +    A +      
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255

Query: 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225
                   L+ +D +           H      ++                   GD   +
Sbjct: 256 FGAYN--VLESFDLEKNASIKRVPLPH--SYYSVNVSTDG-----STVWLGGALGDLAAY 306

Query: 226 DVSLRKCVICLSGHTLAVTCVKWG 249
           D    +    +     A   +   
Sbjct: 307 DAETLEKKGQVDLPGNASMSLASV 330

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 7e-07
 Identities = 10/54 (18%), Positives = 17/54 (31%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
               +  SV  S DG  +  G     +  +D  T     +     N  + +A  
Sbjct: 277 PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASV 330

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 16/191 (8%), Positives = 40/191 (20%), Gaps = 43/191 (22%)

Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313
           I   ++   + V +T +  + + +         +                G+        
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVP---------MVAPGGRIA------ 48

Query: 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL----VNHVYFS 369
                               + +   ++   +    +          +     +     S
Sbjct: 49  ------------------YATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS 90

Query: 370 PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS 429
           PDG+ +A       ++L +             V             F  P     +    
Sbjct: 91  PDGKTLAIYESPVRLELTHFEVQ------PTRVALYDAETLSRRKAFEAPRQITMLAWAR 144

Query: 430 CCMSLYSWSAD 440
               LY    D
Sbjct: 145 DGSKLYGLGRD 155

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 85.2 bits (210), Expect = 1e-18
 Identities = 44/336 (13%), Positives = 85/336 (25%), Gaps = 35/336 (10%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-----KCTGHKNW 152
                 +     AV     S  GR L     D  V + DL  + P         +  ++ 
Sbjct: 52  YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110

Query: 153 VLCIAWSADGKHL-VSGSKAGELQCWDPQTGKP-----SGNPLSGHKKWITGISWEPVHL 206
                   + K+         +    D +T +P     +       +++        +  
Sbjct: 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 170

Query: 207 NAPCRRFVSASKD-GDARIWDVSLRKCVICLSGHTLAVT-CVKWGGDG--VIYTGSQDCT 262
           +     F+   K+ G   + D +    +                 G     I   +    
Sbjct: 171 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 230

Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG---AFDHTGKQYSS-----PEEMK 314
           + V +T +GKL+      G   +    +       G   A  H G    +     PE   
Sbjct: 231 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 290

Query: 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW 374
             A +  +         L   +   + +L+           +    ++   V    D + 
Sbjct: 291 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVD-------ATLNPEAEISGSVAV-FDIKA 342

Query: 375 VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410
           +     D   K          A        V Q  F
Sbjct: 343 MTGDGSDPEFKTLPIAEW---AGITEGQPRVVQGEF 375

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 67.5 bits (164), Expect = 9e-13
 Identities = 39/323 (12%), Positives = 79/323 (24%), Gaps = 40/323 (12%)

Query: 114 VAFSPDGRQL--ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA 171
                D   L   +      + L D +T             V     SA G++L    + 
Sbjct: 24  QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRD 82

Query: 172 GELQCWDPQTGKPSG----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227
           G++   D    +P+        S  +   T                  A       I D 
Sbjct: 83  GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK----YAIAGAYWPPQYVIMDG 138

Query: 228 SLRKCVICLSGHTLAVTCVKWGGDGV-------------IYTGSQDCTIKVWETTQGKLI 274
              +     S   +     ++  +               I    +   I + + T    +
Sbjct: 139 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL 198

Query: 275 RELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333
           +  +     +++   L   +     A +   K      +  K         +   P R  
Sbjct: 199 KTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA 258

Query: 334 ------SGSDDFTMFLWEPAVS--KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
                  G    T  + + +V+           +   +   + +  G  +   +   S  
Sbjct: 259 NFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY 318

Query: 386 LWNGTTGKF-------VAVFRGH 401
           L+   T          VAVF   
Sbjct: 319 LYVDATLNPEAEISGSVAVFDIK 341

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 65.6 bits (159), Expect = 4e-12
 Identities = 33/317 (10%), Positives = 76/317 (23%), Gaps = 32/317 (10%)

Query: 106 GHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMF-----------KCTGHKNWV 153
                  S     + +   A         + D  T  P             +    +  V
Sbjct: 106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV 165

Query: 154 LCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR 212
             I  S       V+  + G++   D              ++++     +  H     R 
Sbjct: 166 AAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH-----RY 220

Query: 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI-YTGSQDCTIKVWE---T 268
           F++A+   +  +   +    ++ +            G + V    G    T  + +    
Sbjct: 221 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVA 280

Query: 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
             G        +   +     +              +       +   A E    +    
Sbjct: 281 LIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA-EISGSVAVFD 339

Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-----ASASFDKS 383
            + +     D        A        +T  Q  V    F+ DG  V          + +
Sbjct: 340 IKAMTGDGSDPEFKTLPIA----EWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESA 395

Query: 384 IKLWNGTTGKFVAVFRG 400
           + + +  T +   V + 
Sbjct: 396 LVVVDDKTLELKHVIKD 412

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 65.2 bits (158), Expect = 4e-12
 Identities = 31/261 (11%), Positives = 70/261 (26%), Gaps = 40/261 (15%)

Query: 156 IAWSADGKHL--VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
                D ++L  V+   AG++   D  T +             TG +     L+A  R  
Sbjct: 24  QMNDWDLENLFSVTLRDAGQIALIDGSTYEIK-------TVLDTGYAVHISRLSASGRYL 76

Query: 214 VSASKDGDARIWDVSLRKC-----VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVW 266
               +DG   + D+ +++      +   S      T    G +    I          + 
Sbjct: 77  FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

Query: 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326
           +    +  +     G   +      E  +      H                        
Sbjct: 137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR---------------------- 174

Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386
             PE +V+  +   + L +       KT     ++ ++        ++  +A+  ++  +
Sbjct: 175 --PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLV 232

Query: 387 WNGTTGKFVAVFRGHVGPVYQ 407
              T    +       G    
Sbjct: 233 VIDTKEGKLVAIEDTGGQTPH 253

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 9/89 (10%)

Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
             AT+    E   SVA   D + +     D   +   +         T  +  V+   ++
Sbjct: 321 VDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAE---WAGITEGQPRVVQGEFN 376

Query: 160 ADGKHLV-----SGSKAGELQCWDPQTGK 183
            DG  +         +   L   D +T +
Sbjct: 377 KDGTEVWFSVWNGKDQESALVVVDDKTLE 405

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.4 bits (204), Expect = 2e-18
 Identities = 43/305 (14%), Positives = 85/305 (27%), Gaps = 27/305 (8%)

Query: 111 VLSVAFSPDGRQLASGSGD-TTVRLWDLNTQT--PMFKCTGH-KNWVLCIAWS--ADGKH 164
              +++ P    +A   G    VR  D       P+ + TGH  + V  + +S     ++
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 165 LVSGSKAGELQCWDPQTGKPS-------GNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
           L SG ++G++  W     K S        +        I+ ISW+              +
Sbjct: 80  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139

Query: 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI--YTGSQDCTIKVWETTQGKLIR 275
                     +    V   S    A    +      +           +          R
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199

Query: 276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQ----------YSSPEEMKKAALERYNKIK 325
                G +V  +  S +            K               E+ ++        + 
Sbjct: 200 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS 259

Query: 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSPDGQ-WVASASFDKS 383
               ++  +   D T+ +W+   SK  +   +   Q     V     G   + S S D +
Sbjct: 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 319

Query: 384 IKLWN 388
           +  + 
Sbjct: 320 LNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.2 bits (167), Expect = 1e-13
 Identities = 48/334 (14%), Positives = 96/334 (28%), Gaps = 54/334 (16%)

Query: 149 HKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGK-PSGNPLSGH-KKWITGISWEPVH 205
            +N+   +++      +     K+  ++C D    K P     +GH    +T + + P  
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP-- 73

Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICL--------SGHTLAVTCVKWGGDG---VI 254
                +   S  + G   +W  +  K    +              ++ + W  +G    +
Sbjct: 74  -IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132

Query: 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314
               +D          G  + E+ GH   +N+  L     +R+      G          
Sbjct: 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 192

Query: 315 KAALERYNKIKGNAPERLVSGS-------------DDFTMFLWEPAVSKQPKTRMTGHQQ 361
           K +       K  +  R V  S                + F  +     +         Q
Sbjct: 193 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ 252

Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN 421
                    D Q  A+   D +I++W+ TT K V  +      +   +  +         
Sbjct: 253 GGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV--------- 303

Query: 422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                           + + R ++S S D TL  
Sbjct: 304 --------------VATGNGR-IISLSLDGTLNF 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 5e-09
 Identities = 18/196 (9%), Positives = 47/196 (23%), Gaps = 5/196 (2%)

Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSG--DTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
             +        +  +++  +GR+L       D        ++   + + +GH   +    
Sbjct: 107 VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACH 166

Query: 158 WSADGKHLVSGSKAGELQCWDP---QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV 214
                              +          S         ++  + + P           
Sbjct: 167 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 226

Query: 215 SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI 274
                         L+            +  + W       T   D TI+VW+ T  K +
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 286

Query: 275 RELKGHGHWVNSLALS 290
           ++       + +  + 
Sbjct: 287 QKWTLDKQQLGNQQVG 302

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 3/93 (3%)

Query: 135 WDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK 194
                   +          +      D +   +      ++ WD  T K      +  K+
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV-QKWTLDKQ 294

Query: 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227
            +       V       R +S S DG    +++
Sbjct: 295 QLGNQQVGVVA--TGNGRIISLSLDGTLNFYEL 325

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 71.9 bits (175), Expect = 4e-14
 Identities = 33/329 (10%), Positives = 77/329 (23%), Gaps = 42/329 (12%)

Query: 114 VAFSPDGRQLA--SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA 171
                D   L   +      + L D +++  +         V     SA G++L+   + 
Sbjct: 24  QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRD 82

Query: 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR- 230
             +   D    +P+             +                A       I D     
Sbjct: 83  ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 142

Query: 231 -KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA- 288
            K ++   G T+                S +    +    +   +  +        ++  
Sbjct: 143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS 202

Query: 289 LSTEYALRTGAFDHTGK------------QYSSPEEMKKAALERYNKI-----------K 325
           +     L  G +D + +                 ++ + +AL    K             
Sbjct: 203 IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHP 262

Query: 326 GNAPERLVSGSDDFTMFLWE------PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA--- 376
              P    S   D ++ L        P  + +    + G       +   P    +    
Sbjct: 263 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 322

Query: 377 ----SASFDKSIKLWNGTTGKFVAVFRGH 401
                A   +S+ +++             
Sbjct: 323 TFNPDARISQSVAVFDLKNLDAKYQVLPI 351

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.9 bits (123), Expect = 9e-08
 Identities = 38/331 (11%), Positives = 79/331 (23%), Gaps = 58/331 (17%)

Query: 103 TIAGHTEAVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMF-----------KCTGHK 150
                     S     + R   +G+       + D  T  P             +    +
Sbjct: 103 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 162

Query: 151 NWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGKPSGNPLSGHKKWITGISWEP---VHL 206
             V  I  S +    +   K  G++   + +          G   ++    W+      +
Sbjct: 163 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFM 222

Query: 207 NAPCRRFVSASKDGDARI---------WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG 257
            A       A  D   R               R        +    +    G   +   G
Sbjct: 223 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG 282

Query: 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALS--TEYALRTGAFDHTGKQYSSPEEMKK 315
           +       +     K + EL+G G     +     + +      F+   +   S      
Sbjct: 283 TDPKNHPQY---AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 339

Query: 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV 375
             L+   ++                  + E A   +   R       V    ++  G  V
Sbjct: 340 KNLDAKYQVLP----------------IAEWADLGEGAKR-------VVQPEYNKRGDEV 376

Query: 376 -----ASASFDKSIKLWNGTTGKFVAVFRGH 401
                   +   ++ + +  T K  AV +  
Sbjct: 377 WFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 407

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 21/106 (19%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLA-------SGSGDTTVRLWDLNTQTPMFKCTGHKN 151
           +  A + G     L +   P    L              +V ++DL      ++      
Sbjct: 294 KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE 353

Query: 152 W---------VLCIAWSADGKHLV-----SGSKAGELQCWDPQTGK 183
           W         V+   ++  G  +        + +  L   D +T K
Sbjct: 354 WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 399

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 27/191 (14%), Positives = 48/191 (25%), Gaps = 47/191 (24%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
           R +  +      V S +   DG     G+       +       + +  G     L I  
Sbjct: 255 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW---KKVAELQGQGGGSLFIKT 311

Query: 159 SADGKHLV-------SGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
                HL            +  +  +D +        +    +W          L    +
Sbjct: 312 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA-KYQVLPIAEW--------ADLGEGAK 362

Query: 212 RFVSA--SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT 269
           R V    +K GD  +W  S+                  W G       +    + V +  
Sbjct: 363 RVVQPEYNKRGD-EVW-FSV------------------WNGK------NDSSALVVVDDK 396

Query: 270 QGKLIRELKGH 280
             KL   +K  
Sbjct: 397 TLKLKAVVKDP 407

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 13/160 (8%), Positives = 44/160 (27%), Gaps = 42/160 (26%)

Query: 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315
           T      I + +    K+++ +   G+ V+   +S            +G+          
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMS-----------ASGR---------- 74

Query: 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR----MTGHQQLVNHVYFSPD 371
                           L+    D  + + +    +  K          + + +  +   +
Sbjct: 75  ---------------YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYE 119

Query: 372 GQWVASAS-FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410
            ++  + + +     + +G T +   +       V    +
Sbjct: 120 DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY 159

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 68.0 bits (164), Expect = 2e-13
 Identities = 35/289 (12%), Positives = 76/289 (26%), Gaps = 16/289 (5%)

Query: 125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGK 183
           + S    + + D+ +           N  +    S DG  + V+ + + ++   D  T  
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV 243
                 +G       +S +   +        + S             K      G     
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGL---- 121

Query: 244 TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGH-------WVNSLALSTEYALR 296
             +   G  +  T + D T+ V  T    +I  +               +      +   
Sbjct: 122 -ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSM 180

Query: 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM 356
           + +   T           +AA              + +    F         + +   R+
Sbjct: 181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240

Query: 357 TGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGKFVAVFRGHVGP 404
                    +  +PDG+ V  + SF  ++ + +  T    A       P
Sbjct: 241 PVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 26/267 (9%), Positives = 68/267 (25%), Gaps = 25/267 (9%)

Query: 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQ 270
           +++ S+  +  + DV+  K    +   +          DG  V    +    + + +T  
Sbjct: 5   YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY----NKIKG 326
             +I  +                 +       +            A   +       +  
Sbjct: 64  NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123

Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386
           +   + +  +++    +       +         +    +  +PDG  V  A+FD     
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183

Query: 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS---------- 436
              T    V            I         Y +N     +    +   +          
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243

Query: 437 -------WSAD-SRLLLSGSKDSTLKV 455
                   + D  ++ ++ S  +T+ V
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSV 270

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 61.0 bits (146), Expect = 8e-11
 Identities = 31/306 (10%), Positives = 64/306 (20%), Gaps = 24/306 (7%)

Query: 106 GHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHKNW---VLCIAWSAD 161
                V  +  SPD R L      +  V  + +                  +  I+    
Sbjct: 34  DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ 93

Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
           G+             +       + +          G+      L+       + S D  
Sbjct: 94  GQF-----------VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGC--HSANISPDNR 140

Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
                   +  +   +         +   +     G+    +      Q           
Sbjct: 141 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS 200

Query: 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
             V  L             D   + +S         +    +            +   T+
Sbjct: 201 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH----LYACDRTASLITV 256

Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLW--NGTTGKFVAVF 398
           F      S   K      +           G+++ +A      I ++   G  G      
Sbjct: 257 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 316

Query: 399 RGHVGP 404
           R  VG 
Sbjct: 317 RYAVGQ 322

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 9/110 (8%), Positives = 27/110 (24%), Gaps = 5/110 (4%)

Query: 333 VSGSDDFTMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGT 390
           ++  +   + +W                   V  +  SPD +++      +  +  +   
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 391 TGKFVAVFRG---HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437
                  F       G +  I  +    F +  ++         +     
Sbjct: 68  PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP 117

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 43/348 (12%), Positives = 74/348 (21%), Gaps = 77/348 (22%)

Query: 93  RIRPVNRCSATIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTP--------- 142
            I   ++       H   +       DG+ L  +   +T V    L+             
Sbjct: 56  EILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV 115

Query: 143 ------MFKCTGHKNWVLC-----IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG 191
                   +     N+V C     I    DG      +        D +T   +   +  
Sbjct: 116 QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD 175

Query: 192 HKK-----------------------WITGISWEPVH----LNAPCRRFVSASKDGDAR- 223
                                      + G            N    R  +A K G+ + 
Sbjct: 176 GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE--RIAAAVKAGNFKT 233

Query: 224 --------IWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLI 274
                   +      +    +                     G    T+ V      KL 
Sbjct: 234 IGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAID--KLD 291

Query: 275 RELKGHGHWVNSLALSTE---YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
              +      +++    E     L T  FD  G  Y++        ++        A   
Sbjct: 292 DLFEDKIELRDTIVAEPELGLGPLHT-TFDGRGNAYTT------LFIDSQVCKWNIADAI 344

Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
                D            K       GH           DG+W+   S
Sbjct: 345 KHYNGDR-----VNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 18/86 (20%)

Query: 103 TIAGHTE---AVLSVAFSPDGRQLASGSGDTTVRLWDLNT---------------QTPMF 144
           TI    E     L   F   G    +   D+ V  W++                 +  + 
Sbjct: 303 TIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ 362

Query: 145 KCTGHKNWVLCIAWSADGKHLVSGSK 170
              GH +  L  +  ADGK LV  SK
Sbjct: 363 YQPGHNHASLTESRDADGKWLVVLSK 388

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 5/172 (2%)

Query: 113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG 172
           ++A +PDG    +      +     +    +      +  V  +A++++G  + +G  A 
Sbjct: 32  NLASAPDGTIFVTNHEVGEIVSITPDGNQQIH--ATVEGKVSGLAFTSNGDLVATGWNAD 89

Query: 173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232
            +          +             I    +   +  +   + S  G   + DV     
Sbjct: 90  SIPVVSLVKSDGTVET---LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 146

Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284
            I L    LA +  +               + V  T +  L+R         
Sbjct: 147 SIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKP 198

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (89), Expect = 6e-04
 Identities = 34/247 (13%), Positives = 65/247 (26%), Gaps = 15/247 (6%)

Query: 103 TIAGHTEAVLSVAFSPDGRQLA--SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA 160
            +    + ++S A+SPDG +LA  +     +  +        + +           A+S 
Sbjct: 33  VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 92

Query: 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220
           DG  L                     +            + EP           ++ + G
Sbjct: 93  DGSKLAFALSKTGSLNLYVMDLA---SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG 149

Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGH 280
             +++ V++                   G        S D    V  ++ G      K  
Sbjct: 150 RPQVYKVNINGGAPQR--------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 201

Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQ-YSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339
                   LS+ +   T +    G     S  +   + L   +   G    RL +     
Sbjct: 202 LATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS-TDGRFKARLPATDGQV 260

Query: 340 TMFLWEP 346
               W P
Sbjct: 261 KFPAWSP 267

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 26/303 (8%), Positives = 71/303 (23%), Gaps = 25/303 (8%)

Query: 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTV---------RLWDLNTQTPMFKCTGHKN 151
           ++T      ++   + SPDG+ +                   ++DLN +  + +     N
Sbjct: 54  NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE-ERIPN 112

Query: 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
               + WS  G   ++     ++               +G +  I     + V+      
Sbjct: 113 NTQWVTWSPVGHK-LAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171

Query: 212 RFVSA--SKDGDARIWDVSLRKCV-----ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK 264
            + +   S +G    +       V        S  +L                +      
Sbjct: 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF 231

Query: 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324
           V  T     +           +  L  ++ L    +    +         +         
Sbjct: 232 VVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDIC- 290

Query: 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
                      S  +   +    +       +   +    H     +  +   ++ +   
Sbjct: 291 ------DYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYR 344

Query: 385 KLW 387
            + 
Sbjct: 345 HIC 347

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 30/284 (10%), Positives = 70/284 (24%), Gaps = 27/284 (9%)

Query: 114 VAFSPD--GRQLASGSGDTTVRLW--DLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS 169
           +  +PD  G ++     D    LW  DL + +   K   +   +    +  DG+ +    
Sbjct: 4   LLLNPDIHGDRIIFVCCD---DLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRV 59

Query: 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229
                               +G    I  I++              A  D D  +   + 
Sbjct: 60  ------MRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113

Query: 230 RKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLAL 289
                     ++                +      +      ++I               
Sbjct: 114 AMQ----PFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRG 169

Query: 290 STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349
            T   +         K+         + +   ++I             D    ++   + 
Sbjct: 170 GTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFI-------TDIDGFGQIYSTDLD 222

Query: 350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393
            +   + T         + + DG+ +  +    SI ++N  T K
Sbjct: 223 GKDLRKHTSFTD-YYPRHLNTDGRRILFSK-GGSIYIFNPDTEK 264

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	456
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.61
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.37
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.35
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.33
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.3
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.25
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.2
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.16
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.16
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.11
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.1
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.1
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.05
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.01
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.0
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.92
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.87
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.75
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.69
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.55
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.35
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.07
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.99
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.99
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.93
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.89
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.86
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.83
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.83
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.81
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.69
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.68
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.54
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.51
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.43
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.38
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.32
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.09
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.85
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.63
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	96.59
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.43
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.34
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.69
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	94.79
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.3
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.08
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.77
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.89
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.87
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.02
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.04
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	87.7
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.37
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.09
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	86.87
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	84.0

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-47  Score=338.60  Aligned_cols=311  Identities=27%  Similarity=0.421  Sum_probs=275.8

Q ss_pred             ecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799           96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (456)
Q Consensus        96 ~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  175 (456)
                      |.....++|+||.++|++++|+|++++||+|+.||+|+|||+.+++.+.++.+|...|.+++|+|++.++++++.++.+.
T Consensus         5 p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~   84 (317)
T d1vyhc1           5 PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK   84 (317)
T ss_dssp             CCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             CCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccc
Confidence            34455678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (456)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l  254 (456)
                      +|+....+... ....|...+.++.|+|     +++.+++++.|+.+++||+++++.+..+.+|...+.++++++++ .+
T Consensus        85 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (317)
T d1vyhc1          85 LWDFQGFECIR-TMHGHDHNVSSVSIMP-----NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI  158 (317)
T ss_dssp             EEETTSSCEEE-CCCCCSSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccc-ccccccccceeeeccC-----CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEE
Confidence            99998776554 5778889999999999     88999999999999999999999999999999999999999998 99


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      ++++.|+.|++|++.+++....+..+...+..+.++++..............                ......+..+++
T Consensus       159 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~  222 (317)
T d1vyhc1         159 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET----------------KKSGKPGPFLLS  222 (317)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----------------------CCEEEE
T ss_pred             EEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeecccccee----------------eeeccCCceeEe
Confidence            9999999999999999999999999999999999998754322221111110                111234678999


Q ss_pred             EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeee
Q 012799          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY  414 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~  414 (456)
                      ++.|+.|++||+.+. .....+.+|...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.++|+++      
T Consensus       223 ~~~d~~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~------  295 (317)
T d1vyhc1         223 GSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL------  295 (317)
T ss_dssp             EETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE------
T ss_pred             ccCCCEEEEEECCCC-cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEE------
Confidence            999999999997654 4566678899999999999999999999999999999999999999999999999999      


Q ss_pred             eecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                           +|+|++++|++|+.||+|+||
T Consensus       296 ---------------------~~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         296 ---------------------DFHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             ---------------------EECSSSSCEEEEETTSEEEEE
T ss_pred             ---------------------EEcCCCCEEEEEeCCCeEEEe
Confidence                                 899999999999999999999

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-46  Score=333.78  Aligned_cols=282  Identities=22%  Similarity=0.418  Sum_probs=250.0

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce-----eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-----FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  175 (456)
                      ++++ +|...|++++|+|+|++||+|+ ||.|+|||+.+....     ....+|.+.|.+++|+|++++|++|+.||.|+
T Consensus        45 ~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~  122 (337)
T d1gxra_          45 INTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS  122 (337)
T ss_dssp             EEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred             EEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccc
Confidence            3444 7999999999999999999987 899999999765322     22347899999999999999999999999999


Q ss_pred             EEeCCCCCCc-cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-e
Q 012799          176 CWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-V  253 (456)
Q Consensus       176 vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~  253 (456)
                      +||+...... ...+..|...+..+.|+|     ++..+++++.|+.|++||+.++++......|...|.+++|++++ .
T Consensus       123 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~  197 (337)
T d1gxra_         123 IWDLAAPTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK  197 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             ccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9998765432 234567888999999999     88999999999999999999999999999999999999999998 9


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE
Q 012799          254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (456)
Q Consensus       254 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (456)
                      +++++.||.+++||+++++.+..+. +...|.+++++|+                                    +++++
T Consensus       198 ~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~------------------------------------~~~l~  240 (337)
T d1gxra_         198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPT------------------------------------GEWLA  240 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTT------------------------------------SSEEE
T ss_pred             cccccccccccccccccceeecccc-cccceEEEEEccc------------------------------------ccccc
Confidence            9999999999999999999888776 7788999999987                                    56699


Q ss_pred             EEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeee
Q 012799          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI  413 (456)
Q Consensus       334 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  413 (456)
                      +++.|+.+++||++....  .....|...|++++|+|++++|++|+.||.|++||+.+++.+..+. |.+.|.++     
T Consensus       241 ~~~~d~~i~i~d~~~~~~--~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~-----  312 (337)
T d1gxra_         241 VGMESSNVEVLHVNKPDK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSC-----  312 (337)
T ss_dssp             EEETTSCEEEEETTSSCE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEE-----
T ss_pred             eecccccccccccccccc--ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEE-----
Confidence            999999999999876543  3456889999999999999999999999999999999999988766 77899999     


Q ss_pred             eeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                            +|+|++++|++|+.||+|+||
T Consensus       313 ----------------------~~s~d~~~l~t~s~D~~I~vW  333 (337)
T d1gxra_         313 ----------------------DISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             ----------------------EECTTSCEEEEEETTSCEEEE
T ss_pred             ----------------------EEeCCCCEEEEEeCCCeEEEE
Confidence                                  899999999999999999999

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-44  Score=329.72  Aligned_cols=288  Identities=27%  Similarity=0.476  Sum_probs=246.4

Q ss_pred             cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe------------------cCCCCEEEEEEcCCCCEEE
Q 012799          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT------------------GHKNWVLCIAWSADGKHLV  166 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l~  166 (456)
                      .+|.+.|+|++|+|||++||+|+ |++|+|||+.+++.+..+.                  .|...|++++|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            36999999999999999999986 8999999999887766553                  4667799999999999999


Q ss_pred             EEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEE
Q 012799          167 SGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV  246 (456)
Q Consensus       167 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  246 (456)
                      +|+.||.|++||...++... ...+|...|.++.|++     ++..+++++.++.+++||.++.........+...+...
T Consensus       138 s~~~dg~v~i~~~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  211 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFP-----SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA  211 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             eccccccccccccccccccc-cccccccccccccccc-----ccccccccccceeeeeeecccccccccccccccccccc
Confidence            99999999999999887765 5778999999999998     88999999999999999999998888777666555555


Q ss_pred             EeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee-------cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799          247 KWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK-------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (456)
Q Consensus       247 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (456)
                      .+.+++ .|++++.||.|++||.+++.....+.       +|...|.+++++|+                          
T Consensus       212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--------------------------  265 (388)
T d1erja_         212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD--------------------------  265 (388)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT--------------------------
T ss_pred             ccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCC--------------------------
Confidence            445566 89999999999999999988776653       46788999999998                          


Q ss_pred             hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC-----------ccccccccccEeEEEECCCCCEEEEEECCCcEEEE
Q 012799          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-----------KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (456)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw  387 (456)
                                +.+|++++.|+.|++||++.....           ......|...|.+++|+|++++|++|+.||.|++|
T Consensus       266 ----------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vw  335 (388)
T d1erja_         266 ----------GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW  335 (388)
T ss_dssp             ----------SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred             ----------CCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEE
Confidence                      567999999999999998754322           22345688899999999999999999999999999


Q ss_pred             eCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          388 NGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       388 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      |+.+++++..+++|.+.|.++.+.                     ...+|+|++++|+|||.||+|+||
T Consensus       336 d~~~~~~~~~l~~H~~~V~~~~~~---------------------~~~~~spd~~~l~s~s~Dg~I~iW  383 (388)
T d1erja_         336 DKKSGNPLLMLQGHRNSVISVAVA---------------------NGSSLGPEYNVFATGSGDCKARIW  383 (388)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEEC---------------------SSCTTCTTCEEEEEEETTSEEEEE
T ss_pred             ECCCCcEEEEEeCCCCCEEEEEEe---------------------cCcccCCCCCEEEEEeCCCEEEEE
Confidence            999999999999999999998541                     122579999999999999999999

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-43  Score=317.22  Aligned_cols=289  Identities=22%  Similarity=0.374  Sum_probs=256.3

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  178 (456)
                      +..++|+||.++|++++|+|++++||+|+.||+|+|||+.+++.+..+..|...|.+++|+|+++++++|+.|+.+.+|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccc---cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799          179 PQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (456)
Q Consensus       179 ~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l  254 (456)
                      .........   .+.+|..........      .+..+.....+.....++............+...+....+.+.+ .+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFL------DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEE------ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccceecccccccccccccc------cccccccccccccccccccccccccccccccceeEeeecccccccee
Confidence            876554321   244555555544443      34578888999999999999888888888888999999999888 88


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      ++++.|+.|++||+++++.+..+.+|...|.+++|+|+                                    ++++++
T Consensus       200 ~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~------------------------------------~~~l~s  243 (340)
T d1tbga_         200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN------------------------------------GNAFAT  243 (340)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTT------------------------------------SSEEEE
T ss_pred             EEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCC------------------------------------CCEEEE
Confidence            99999999999999999999999999999999999998                                    567999


Q ss_pred             EeCCCcEEEEecCCCCCCcc-ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeee
Q 012799          335 GSDDFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI  413 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  413 (456)
                      |+.|+.|++||+........ ....+...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.++|+++     
T Consensus       244 ~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l-----  318 (340)
T d1tbga_         244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL-----  318 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE-----
T ss_pred             EeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEE-----
Confidence            99999999999876554322 234667789999999999999999999999999999999999999999999999     


Q ss_pred             eeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                            +|+|++++|+|||.||+|+||
T Consensus       319 ----------------------~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         319 ----------------------GVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             ----------------------EECTTSSCEEEEETTSCEEEE
T ss_pred             ----------------------EEeCCCCEEEEEccCCEEEEe
Confidence                                  899999999999999999999

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-43  Score=313.55  Aligned_cols=281  Identities=21%  Similarity=0.253  Sum_probs=245.5

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  186 (456)
                      +.+.+..++++|+|+.||.++ ++.|.+|++.+......+.+|...|++++|+|+|++|++|+.||+|++||+.++....
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence            455677899999999999986 5579999999999999999999999999999999999999999999999999876543


Q ss_pred             -ccccCcccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCC
Q 012799          187 -NPLSGHKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDC  261 (456)
Q Consensus       187 -~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg  261 (456)
                       ..+..|...|.+++|+|     +++++++++.  +..+++|++++++....+.+|...|++++|+|++  .+++|+.||
T Consensus        95 ~~~~~~~~~~v~~v~~s~-----d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~  169 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDS-----ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN  169 (311)
T ss_dssp             EEEEECSSSCEEEEEECT-----TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred             ccccccccCccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence             34677899999999999     8899999886  4569999999999988999999999999999988  588899999


Q ss_pred             cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcE
Q 012799          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (456)
Q Consensus       262 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  341 (456)
                      .|++||+++++....+..|..+|.++.++|+                                    ++++++++.|+.+
T Consensus       170 ~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~------------------------------------~~~l~~~~~d~~v  213 (311)
T d1nr0a1         170 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD------------------------------------GSLFASTGGDGTI  213 (311)
T ss_dssp             CEEEEETTTBEEEEEECCCSSCEEEEEECTT------------------------------------SSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccccccCcc------------------------------------ccccccccccccc
Confidence            9999999999999999999999999999998                                    5669999999999


Q ss_pred             EEEecCCCCCC------ccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc-cEEEEEeeeee
Q 012799          342 FLWEPAVSKQP------KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-PVYQIRFELIY  414 (456)
Q Consensus       342 ~iwd~~~~~~~------~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~  414 (456)
                      ++||.......      .....+|...|++++|+|++++|++|+.||.|+|||+++++++.++..|.. ....+      
T Consensus       214 ~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~------  287 (311)
T d1nr0a1         214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL------  287 (311)
T ss_dssp             EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE------
T ss_pred             cccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEE------
Confidence            99998765421      123457899999999999999999999999999999999999999887654 22222      


Q ss_pred             eecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                           .+.+++++|++++.||.|++|
T Consensus       288 ---------------------~~~~~~~~l~s~s~dG~i~~w  308 (311)
T d1nr0a1         288 ---------------------GIIWTKQALVSISANGFINFV  308 (311)
T ss_dssp             ---------------------EEEECSSCEEEEETTCCEEEE
T ss_pred             ---------------------EEEecCCEEEEEECCCEEEEE
Confidence                                 335556789999999999999

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-40  Score=292.34  Aligned_cols=284  Identities=19%  Similarity=0.226  Sum_probs=228.3

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  176 (456)
                      +...++++||.++|++++|+|++++||+|+.||+|++||+.+++....+. +|...|++++|+|+++ +++++.|+.+++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~   80 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV   80 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEE
Confidence            34567889999999999999999999999999999999999998887774 6899999999999987 456678999999


Q ss_pred             EeCCCCCCc--cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-e
Q 012799          177 WDPQTGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-V  253 (456)
Q Consensus       177 wd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~  253 (456)
                      |+.......  ......+...+.+++|+|     ++..+++++ ++.+++|+...  .....  ....+.+++++|++ .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~  150 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSA-----DGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQF  150 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECT-----TSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCE
T ss_pred             eccCCcccccccccccccccccccccccc-----ccccccccc-ccccccccccc--ccccc--cccccccccccccccc
Confidence            998765432  123345677889999988     777666554 57899998543  22222  34567889999998 8


Q ss_pred             EEEEeCCCcEEEEECCCCeEEE-EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799          254 IYTGSQDCTIKVWETTQGKLIR-ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (456)
Q Consensus       254 l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (456)
                      +++++.||.|++||+++++... ....|...|.+++++|+                                    +.++
T Consensus       151 l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~~~l  194 (299)
T d1nr0a2         151 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN------------------------------------GAFL  194 (299)
T ss_dssp             EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT------------------------------------SSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccc------------------------------------cccc
Confidence            9999999999999998877654 34458889999999997                                    5669


Q ss_pred             EEEeCCCcEEEEecCCCCC--CccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE--ecc-cccEEE
Q 012799          333 VSGSDDFTMFLWEPAVSKQ--PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF--RGH-VGPVYQ  407 (456)
Q Consensus       333 ~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~-~~~v~~  407 (456)
                      ++++.|+.|++||+.....  ....+.+|...|++++|+|++++|++|+.||.|++||++++.....+  ..| ...+..
T Consensus       195 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  274 (299)
T d1nr0a2         195 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNS  274 (299)
T ss_dssp             EEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEE
Confidence            9999999999999876543  23445679999999999999999999999999999999886543322  233 345665


Q ss_pred             EEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       408 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +                           . ++++++|++|+.||+|+||
T Consensus       275 ~---------------------------~-~~~~~~l~s~s~D~~i~iW  295 (299)
T d1nr0a2         275 V---------------------------I-WLNETTIVSAGQDSNIKFW  295 (299)
T ss_dssp             E---------------------------E-EEETTEEEEEETTSCEEEE
T ss_pred             E---------------------------E-ECCCCEEEEEeCCCEEEEE
Confidence            5                           4 4567899999999999999

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.8e-41  Score=303.95  Aligned_cols=241  Identities=16%  Similarity=0.218  Sum_probs=204.8

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  184 (456)
                      +.++|+|++|+|||++||+|+.||.|+|||..+++  .+..+.+|.++|.+++|+|++++|++|+.|++|++||++++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            35789999999999999999999999999998765  5677889999999999999999999999999999999987654


Q ss_pred             cc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE----EEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799          185 SG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC----VICLSGHTLAVTCVKWGGDG-VIYTGS  258 (456)
Q Consensus       185 ~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~-~l~~~~  258 (456)
                      .. ..+.+|...|.+++|+|     +++.|++++.|+.+++|++.....    ......|...|.+++|+|++ .|++|+
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p-----~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s  160 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAP-----NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  160 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECT-----TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccccccc-----ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccc
Confidence            32 23567889999999999     899999999999999999865432    34456788999999999999 899999


Q ss_pred             CCCcEEEEECCCC------------------eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799          259 QDCTIKVWETTQG------------------KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (456)
Q Consensus       259 ~dg~i~iwd~~~~------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (456)
                      .||.+++||....                  ..+.....|...+.+++|+|+                            
T Consensus       161 ~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----------------------------  212 (371)
T d1k8kc_         161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN----------------------------  212 (371)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS----------------------------
T ss_pred             cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecc----------------------------
Confidence            9999999998642                  355666778889999999998                            


Q ss_pred             hhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       321 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                              ++++++++.|+.|++||+... .....+..|..+|.+++|+|++++|++| .|+.+++|...
T Consensus       213 --------g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~  272 (371)
T d1k8kc_         213 --------GSRVAWVSHDSTVCLADADKK-MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYD  272 (371)
T ss_dssp             --------SSEEEEEETTTEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred             --------cccccccccCCcceEEeeecc-cceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEee
Confidence                    667999999999999997665 4556677899999999999999888765 47776666543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-38  Score=282.33  Aligned_cols=247  Identities=22%  Similarity=0.293  Sum_probs=212.5

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce--eEEecCCCCEEEEEEcCCCCEEEEEeC--CCeE
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSK--AGEL  174 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i  174 (456)
                      ...+.+.+|.+.|++++|+|+|++||+|+.||+|++||+.+++..  ..+..|...|.+++|+|++++|++++.  +..+
T Consensus        49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~  128 (311)
T d1nr0a1          49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  128 (311)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccc
Confidence            456678899999999999999999999999999999999887654  457789999999999999999999986  4569


Q ss_pred             EEEeCCCCCCccccccCcccceEEEEecccccCCCCC-EEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-
Q 012799          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-  252 (456)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  252 (456)
                      ++|++++++... .+.+|...|.+++|+|     +++ .+++|+.||.|++||+++++....+..|...|+++.|+|++ 
T Consensus       129 ~v~~~~~~~~~~-~l~~h~~~v~~v~~~~-----~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~  202 (311)
T d1nr0a1         129 HVFLFDTGTSNG-NLTGQARAMNSVDFKP-----SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS  202 (311)
T ss_dssp             EEEETTTCCBCB-CCCCCSSCEEEEEECS-----SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS
T ss_pred             cccccccccccc-cccccccccccccccc-----cceeeecccccccccccccccccccccccccccccccccccCcccc
Confidence            999999988765 5788999999999998     666 48889999999999999999999999999999999999998 


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEee-------cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhcc
Q 012799          253 VIYTGSQDCTIKVWETTQGKLIRELK-------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (456)
                      .+++++.||.|++||+++++....+.       +|...|.+++|+|+                                 
T Consensus       203 ~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~---------------------------------  249 (311)
T d1nr0a1         203 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD---------------------------------  249 (311)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT---------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccCCC---------------------------------
Confidence            89999999999999999988877664       46788999999998                                 


Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCCCCCcccccccc---ccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ---QLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (456)
Q Consensus       326 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  390 (456)
                         +++|++|+.||.|++||+++.+ ....+..|.   ..+.++.|  ++++|++++.||.|++||.+
T Consensus       250 ---~~~l~tgs~Dg~v~iwd~~t~~-~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         250 ---GTKIASASADKTIKIWNVATLK-VEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             ---SSEEEEEETTSEEEEEETTTTE-EEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             ---CCEEEEEeCCCeEEEEECCCCc-EEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence               6679999999999999987654 344444332   34445555  55679999999999999964

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-38  Score=285.83  Aligned_cols=286  Identities=28%  Similarity=0.480  Sum_probs=229.8

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  178 (456)
                      ++.+.|+||.+.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|...|.+++|+|+  +|++|+.|+.+++|+
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWN   83 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccc
Confidence            456789999999865 46778999999999999999999999999999999999999999875  999999999999999


Q ss_pred             CCCCCCccccccCcccceEEEEecc---------------------------------cccCCCCCEEEEEeCCCcEEEE
Q 012799          179 PQTGKPSGNPLSGHKKWITGISWEP---------------------------------VHLNAPCRRFVSASKDGDARIW  225 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~---------------------------------~~~~~~~~~l~~~~~dg~i~iw  225 (456)
                      ......... ...+...+......+                                 .........+++++.|+.|++|
T Consensus        84 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  162 (342)
T d2ovrb2          84 AETGECIHT-LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW  162 (342)
T ss_dssp             TTTTEEEEE-ECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEE
T ss_pred             cccccceec-ccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEe
Confidence            876543211 111111111100000                                 0001144678899999999999


Q ss_pred             ECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCC
Q 012799          226 DVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (456)
Q Consensus       226 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  305 (456)
                      |....+.+..+.+|...+..+.+.+. .+++++.||.|++||++.++.+..+..|...+.+++++++             
T Consensus       163 d~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-------------  228 (342)
T d2ovrb2         163 DPETETCLHTLQGHTNRVYSLQFDGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN-------------  228 (342)
T ss_dssp             EGGGTEEEEEECCCSSCEEEEEECSS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETT-------------
T ss_pred             ecccceeeEEEcCcccccccccCCCC-EEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCC-------------
Confidence            99999999999999988888777543 8999999999999999999999999999999988887654             


Q ss_pred             ccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc--ccccccccEeEEEECCCCCEEEEEECCCc
Q 012799          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT--RMTGHQQLVNHVYFSPDGQWVASASFDKS  383 (456)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~s~~~dg~  383 (456)
                                               ++++++.|+.|++||+........  ....|...+.++.++  ++++++|+.||.
T Consensus       229 -------------------------~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~  281 (342)
T d2ovrb2         229 -------------------------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGT  281 (342)
T ss_dssp             -------------------------EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred             -------------------------EEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCE
Confidence                                     599999999999999776543322  223566677777775  569999999999


Q ss_pred             EEEEeCCCCeEEEEEe-----cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCc----eE
Q 012799          384 IKLWNGTTGKFVAVFR-----GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST----LK  454 (456)
Q Consensus       384 i~iwd~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~----v~  454 (456)
                      |++||++++++++.+.     +|.+.|+++                           +|+|++.+|++|+.||+    |+
T Consensus       282 i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v---------------------------~~s~~~~~la~g~~dGt~~~~l~  334 (342)
T d2ovrb2         282 VKLWDLKTGEFIRNLVTLESGGSGGVVWRI---------------------------RASNTKLVCAVGSRNGTEETKLL  334 (342)
T ss_dssp             EEEEETTTCCEEEEEEECTTGGGTCEEEEE---------------------------EECSSEEEEEEECSSSSSCCEEE
T ss_pred             EEEEECCCCCEEEEEecccCCCCCCCEEEE---------------------------EECCCCCEEEEEeCCCCCeeEEE
Confidence            9999999999988875     577789999                           89999999999999996    77


Q ss_pred             EC
Q 012799          455 VT  456 (456)
Q Consensus       455 iW  456 (456)
                      +|
T Consensus       335 ~~  336 (342)
T d2ovrb2         335 VL  336 (342)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-38  Score=286.82  Aligned_cols=283  Identities=23%  Similarity=0.372  Sum_probs=222.9

Q ss_pred             cccccCCcccE-EEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          101 SATIAGHTEAV-LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       101 ~~~l~~h~~~V-~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      ..+|+||.+.| +|++|  ++++||+|+.||+|+|||+.+++.+.++.+|.+.|++++|+|+ .+|++|+.|+.|++|+.
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence            45789999886 56555  6889999999999999999999999999999999999999985 58999999999999999


Q ss_pred             CCCCCcccccc-CcccceEEEEecc-------------------------------------------------------
Q 012799          180 QTGKPSGNPLS-GHKKWITGISWEP-------------------------------------------------------  203 (456)
Q Consensus       180 ~~~~~~~~~~~-~~~~~v~~~~~~~-------------------------------------------------------  203 (456)
                      ...+....... .+........+.+                                                       
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  161 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred             cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence            87653321111 0111111111111                                                       


Q ss_pred             ---cccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeec
Q 012799          204 ---VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG  279 (456)
Q Consensus       204 ---~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~  279 (456)
                         .....+++.++++..|+.|++||+++++.+....++...+.++.+++++ .+++++.|+.|++||++++..+..+.+
T Consensus       162 ~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  241 (355)
T d1nexb2         162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG  241 (355)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             ccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccc
Confidence               0001134566777777777777777777777777888889999999988 999999999999999999999999999


Q ss_pred             CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc
Q 012799          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (456)
Q Consensus       280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  359 (456)
                      |...|.+++++++                                      ++++++.||.|++||+....   ..+..|
T Consensus       242 h~~~v~~~~~~~~--------------------------------------~l~~~~~dg~i~iwd~~~~~---~~~~~~  280 (355)
T d1nexb2         242 HTALVGLLRLSDK--------------------------------------FLVSAAADGSIRGWDANDYS---RKFSYH  280 (355)
T ss_dssp             CSSCCCEEEECSS--------------------------------------EEEEECTTSEEEEEETTTCC---EEEEEE
T ss_pred             ccccccccccccc--------------------------------------eeeeeecccccccccccccc---eecccc
Confidence            9999999998754                                      59999999999999976543   334456


Q ss_pred             cccEeEE-EECCCCCEEEEEECCCcEEEEeCCCCeEEE-EEecccccEEEEEeeeeeeecCCCCceeeecccccccceeE
Q 012799          360 QQLVNHV-YFSPDGQWVASASFDKSIKLWNGTTGKFVA-VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (456)
Q Consensus       360 ~~~v~~~-~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (456)
                      ...+.++ .+++++++|++|+ ||.|++||+++|+++. .+.+|.++|+++                           +|
T Consensus       281 ~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v---------------------------~~  332 (355)
T d1nexb2         281 HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSV---------------------------NF  332 (355)
T ss_dssp             CTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEE---------------------------EE
T ss_pred             cCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEE---------------------------EE
Confidence            6656555 5677888777665 8999999999999885 567899999999                           88


Q ss_pred             ecCCCeEEEeeCCCceEEC
Q 012799          438 SADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       438 s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +|+ .++++++.||+++||
T Consensus       333 ~~~-~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         333 KGK-TLVAAVEKDGQSFLE  350 (355)
T ss_dssp             ETT-EEEEEEESSSCEEEE
T ss_pred             cCC-eEEEEEECCCcEEEE
Confidence            987 578889999998887

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-37  Score=274.61  Aligned_cols=266  Identities=18%  Similarity=0.239  Sum_probs=226.2

Q ss_pred             cccEEEEEEeccc---------eEEEeeccc-------ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC-
Q 012799           78 VEKVLSIVYQPQA---------VFRIRPVNR-------CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-  140 (456)
Q Consensus        78 ~~~~~~~~~~~~~---------~~~~~~~~~-------~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~-  140 (456)
                      ...+..+.|+|+.         .+++|....       ......+|.+.|.+++|+|++++|++|+.||.|++||+... 
T Consensus        51 ~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~  130 (337)
T d1gxra_          51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT  130 (337)
T ss_dssp             SSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred             CCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc
Confidence            3455666666643         345564321       12234689999999999999999999999999999998754 


Q ss_pred             -cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC
Q 012799          141 -TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD  219 (456)
Q Consensus       141 -~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d  219 (456)
                       +....+..|...+.+++|+|++.++++++.|+.|++|++.+++... ....|...|.+++|++     ++..+++++.|
T Consensus       131 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~-~~~~~~~~v~~l~~s~-----~~~~~~~~~~d  204 (337)
T d1gxra_         131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR-QFQGHTDGASCIDISN-----DGTKLWTGGLD  204 (337)
T ss_dssp             -EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECT-----TSSEEEEEETT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc-----ccccccccccc
Confidence             4456677899999999999999999999999999999999887654 5677899999999998     88999999999


Q ss_pred             CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeec
Q 012799          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG  298 (456)
Q Consensus       220 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  298 (456)
                      +.+++||+++++.+..+. +...|.+++|+|++ .+++++.||.+++||+++++... ...|...|.+++|+|+      
T Consensus       205 ~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~------  276 (337)
T d1gxra_         205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYC------  276 (337)
T ss_dssp             SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTT------
T ss_pred             ccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccccccc-ccccccccceEEECCC------
Confidence            999999999999887764 78899999999998 89999999999999999887654 4568889999999998      


Q ss_pred             cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE
Q 012799          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA  378 (456)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  378 (456)
                                                    +++|++++.||.|++||+...... . ...|...|++++|+|++++|++|
T Consensus       277 ------------------------------g~~l~s~s~Dg~i~iwd~~~~~~~-~-~~~~~~~v~~~~~s~d~~~l~t~  324 (337)
T d1gxra_         277 ------------------------------GKWFVSTGKDNLLNAWRTPYGASI-F-QSKESSSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             ------------------------------SSEEEEEETTSEEEEEETTTCCEE-E-EEECSSCEEEEEECTTSCEEEEE
T ss_pred             ------------------------------CCEEEEEeCCCeEEEEECCCCCEE-E-EccCCCCEEEEEEeCCCCEEEEE
Confidence                                          567999999999999997765533 2 34578899999999999999999


Q ss_pred             ECCCcEEEEeC
Q 012799          379 SFDKSIKLWNG  389 (456)
Q Consensus       379 ~~dg~i~iwd~  389 (456)
                      +.||.|+|||+
T Consensus       325 s~D~~I~vWdl  335 (337)
T d1gxra_         325 SGDKKATVYEV  335 (337)
T ss_dssp             ETTSCEEEEEE
T ss_pred             eCCCeEEEEEE
Confidence            99999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-36  Score=268.32  Aligned_cols=280  Identities=20%  Similarity=0.254  Sum_probs=225.7

Q ss_pred             cEEEEEECCCCCeEEEEECCC-cEEEEeCCCC--cceeEEecCC-CCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCC
Q 012799          110 AVLSVAFSPDGRQLASGSGDT-TVRLWDLNTQ--TPMFKCTGHK-NWVLCIAWSA--DGKHLVSGSKAGELQCWDPQTGK  183 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~-~v~vwd~~~~--~~~~~~~~~~-~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~  183 (456)
                      .+++++|+|+++.||.++.+. .|+.|+....  .....+.+|. ..|++++|+|  ++.+|++|+.||+|++||+..++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            457899999999999987654 3566765433  3456677774 6799999998  67899999999999999997765


Q ss_pred             Cccc-------cccCcccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--
Q 012799          184 PSGN-------PLSGHKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--  252 (456)
Q Consensus       184 ~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--  252 (456)
                      ....       ....|...|.+++|++     ++.++++++.  ++.+++|+..+++++..+.+|...|.+++|+|++  
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDF-----EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM  173 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECT-----TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             ceeeeecccccccccccCcEEEEEECC-----CCCccceeeccccceEEEEeecccccceeeeecccccccccccccccc
Confidence            4321       1345778899999999     8899887764  6789999999999999999999999999999987  


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEee---cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799          253 VIYTGSQDCTIKVWETTQGKLIRELK---GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (456)
                      .+++++.|+.+++||....+....+.   .+...|.+++|+|+.                                   +
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~-----------------------------------~  218 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-----------------------------------G  218 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT-----------------------------------C
T ss_pred             eEEEeecccccccccccccccceecccccCCCCccEEeeecccc-----------------------------------c
Confidence            57889999999999999887766653   466789999999972                                   5


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEEC---CCCCEEEEEECCCcEEEEeCCCCeEEEEEeccccc--
Q 012799          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS---PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP--  404 (456)
Q Consensus       330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s---p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--  404 (456)
                      .++++++.|+.|++||++... ....+.+|..++..+.|+   |+|++|++++.||.|+|||+++++++..+..|...  
T Consensus       219 ~~l~s~~~d~~i~iwd~~~~~-~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~  297 (325)
T d1pgua1         219 EFVITVGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG  297 (325)
T ss_dssp             CEEEEEETTCCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG
T ss_pred             eeccccccccceeeeeecccc-ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCccc
Confidence            679999999999999976554 555677788777666655   68999999999999999999999999988766653  


Q ss_pred             EEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       405 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +..+.+                         .|.++ .+|++||.||+|+||
T Consensus       298 ~~~~~~-------------------------~~~~~-~~l~s~s~dg~i~vw  323 (325)
T d1pgua1         298 NQQVGV-------------------------VATGN-GRIISLSLDGTLNFY  323 (325)
T ss_dssp             GCEEEE-------------------------EEEET-TEEEEEETTSCEEEE
T ss_pred             CeEEEE-------------------------EECCC-CEEEEEECCCEEEEE
Confidence            333311                         44444 478999999999999

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-35  Score=261.17  Aligned_cols=269  Identities=26%  Similarity=0.564  Sum_probs=241.8

Q ss_pred             CcccEEEEEEeccc----------eEEEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee
Q 012799           77 SVEKVLSIVYQPQA----------VFRIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF  144 (456)
Q Consensus        77 ~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~  144 (456)
                      |..++..+.|+|+.          .+++|.  .+++.+++.+|.+.|.+++|+|++.++++++.++.+.+|+....+...
T Consensus        16 H~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (317)
T d1vyhc1          16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR   95 (317)
T ss_dssp             CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccc
Confidence            44566667776643          455664  356788899999999999999999999999999999999999888888


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (456)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i  224 (456)
                      .+.+|...+.++.|+|+++.+++++.|+.+++||+++++... .+..|...+.+++|+|     ++.++++++.|+.|++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~l~~~~~d~~v~~  169 (317)
T d1vyhc1          96 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQ-----DGTLIASCSNDQTVRV  169 (317)
T ss_dssp             CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECT-----TSSEEEEEETTSCEEE
T ss_pred             ccccccccceeeeccCCCceEEeeccCcceeEeecccceeee-EEccCCCcceeeeccc-----CCCEEEEEeCCCeEEE
Confidence            888999999999999999999999999999999999987665 5778899999999999     8899999999999999


Q ss_pred             EECCCCeEEEEecCcCccEEEEEeCCCC---------------------eEEEEeCCCcEEEEECCCCeEEEEeecCCcc
Q 012799          225 WDVSLRKCVICLSGHTLAVTCVKWGGDG---------------------VIYTGSQDCTIKVWETTQGKLIRELKGHGHW  283 (456)
Q Consensus       225 wd~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  283 (456)
                      |++.+++....+.+|...+.++++.|++                     .+++++.||.|++||+++++++..+.+|...
T Consensus       170 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  249 (317)
T d1vyhc1         170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW  249 (317)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             EeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCC
Confidence            9999999999999999999999987653                     4888999999999999999999999999999


Q ss_pred             eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccE
Q 012799          284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV  363 (456)
Q Consensus       284 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  363 (456)
                      |.+++++|+                                    +.+|++|+.||.|++||+.+.+ ++..+.+|...|
T Consensus       250 v~~~~~~~~------------------------------------~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~V  292 (317)
T d1vyhc1         250 VRGVLFHSG------------------------------------GKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFV  292 (317)
T ss_dssp             EEEEEECSS------------------------------------SSCEEEEETTTEEEEECCTTSC-CCEEEECCSSCE
T ss_pred             EEEEEECCC------------------------------------CCEEEEEECCCeEEEEECCCCc-EEEEEcCCCCCE
Confidence            999999998                                    5569999999999999987654 566788999999


Q ss_pred             eEEEECCCCCEEEEEECCCcEEEEe
Q 012799          364 NHVYFSPDGQWVASASFDKSIKLWN  388 (456)
Q Consensus       364 ~~~~~sp~~~~l~s~~~dg~i~iwd  388 (456)
                      ++++|+|++++|++|+.||+|+|||
T Consensus       293 ~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         293 TSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-35  Score=257.29  Aligned_cols=273  Identities=28%  Similarity=0.481  Sum_probs=224.6

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  180 (456)
                      ++.+.+|...|+|++|  ||++||+|+.||+|+|||+.+++++.++.+|...|++++|  ++++|++|+.|+.|++|++.
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence            3445678999998765  7899999999999999999999999999999999999987  67899999999999999999


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe---EEEEecCcCccEEEEEeCCCCeEEEE
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLAVTCVKWGGDGVIYTG  257 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~l~~~  257 (456)
                      .+..... ...+......  +.+     ....++++..++.+.+||.....   ....+..|...+.++.+.+. .++++
T Consensus        84 ~~~~~~~-~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~  154 (293)
T d1p22a2          84 TGEMLNT-LIHHCEAVLH--LRF-----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSA  154 (293)
T ss_dssp             SCCEEEE-ECCCCSCEEE--EEC-----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT-EEEEE
T ss_pred             ccccccc-cccccccccc--ccc-----cccceeecccccceeEeeccccccccccccccccccccccceeccc-ccccc
Confidence            8876542 2222222222  222     45689999999999999997654   34556778889988888765 77889


Q ss_pred             eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (456)
                      +.|+.+++||+++++.+..+.++...+..+.+++.                                      .+++++.
T Consensus       155 s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~--------------------------------------~l~~~~~  196 (293)
T d1p22a2         155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--------------------------------------LVVSGSS  196 (293)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT--------------------------------------EEEEEET
T ss_pred             cCCCceeeecCCCCcEEEEEcccccccccccCCCC--------------------------------------eEEEecC
Confidence            99999999999999999999988888888877643                                      5999999


Q ss_pred             CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC---------CeEEEEEecccccEEEE
Q 012799          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT---------GKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~i  408 (456)
                      |+.|++||++... ......+|...+..  +++++.+|++|+.||.|++||+..         ...+..+.+|.++|+++
T Consensus       197 dg~i~i~d~~~~~-~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v  273 (293)
T d1p22a2         197 DNTIRLWDIECGA-CLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL  273 (293)
T ss_dssp             TSCEEEEETTTCC-EEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred             CCEEEEEecccce-eeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEE
Confidence            9999999977554 45556777777765  456788999999999999999643         35678889999999988


Q ss_pred             EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                                 +|  ++++|+|||.||+|+||
T Consensus       274 ---------------------------~~--d~~~l~s~s~Dg~i~iW  292 (293)
T d1p22a2         274 ---------------------------QF--DEFQIVSSSHDDTILIW  292 (293)
T ss_dssp             ---------------------------EE--CSSCEEECCSSSEEEEE
T ss_pred             ---------------------------EE--cCCEEEEEecCCEEEEe
Confidence                                       66  56799999999999999

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.6e-36  Score=272.04  Aligned_cols=239  Identities=22%  Similarity=0.314  Sum_probs=204.2

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc-cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC
Q 012799          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  227 (456)
                      ...+|+|++|+|++++||+|+.||.|++||+++++.. ...+.+|.+.|.+++|+|     ++++|++++.|+.|++||+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-----~~~~l~s~s~D~~i~vWd~   80 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-----DSNRIVTCGTDRNAYVWTL   80 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-----TTTEEEEEETTSCEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-----CCCEEEEEECCCeEEEEee
Confidence            4578999999999999999999999999999877532 234678999999999999     8999999999999999999


Q ss_pred             CCCeE--EEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeE----EEEeecCCcceEEEEecCcceeeeccc
Q 012799          228 SLRKC--VICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL----IRELKGHGHWVNSLALSTEYALRTGAF  300 (456)
Q Consensus       228 ~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~  300 (456)
                      .++..  ...+.+|...|.+++|+|++ .|++++.|+.+++|++.....    ......|...|.+++|+|+        
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--------  152 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN--------  152 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT--------
T ss_pred             cccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccccc--------
Confidence            87654  44557789999999999999 899999999999998876543    2334567889999999998        


Q ss_pred             cCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-----------------CCccccccccccE
Q 012799          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-----------------QPKTRMTGHQQLV  363 (456)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~v  363 (456)
                                                  +.+|++|+.|+.+++||.....                 ........|...|
T Consensus       153 ----------------------------~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (371)
T d1k8kc_         153 ----------------------------SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV  204 (371)
T ss_dssp             ----------------------------SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred             ----------------------------ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcE
Confidence                                        5669999999999999975432                 1223346788899


Q ss_pred             eEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCe
Q 012799          364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL  443 (456)
Q Consensus       364 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  443 (456)
                      .+++|+|+|++|++++.||.|++||+.+++.+..+..|..+|.++                           +|+||+++
T Consensus       205 ~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~---------------------------~fs~d~~~  257 (371)
T d1k8kc_         205 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV---------------------------TFITESSL  257 (371)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE---------------------------EEEETTEE
T ss_pred             EEEEeecccccccccccCCcceEEeeecccceeeeecccccceee---------------------------eecCCCCE
Confidence            999999999999999999999999999999999999999999999                           89999988


Q ss_pred             EEEeeCCCceEEC
Q 012799          444 LLSGSKDSTLKVT  456 (456)
Q Consensus       444 l~s~s~Dg~v~iW  456 (456)
                      |++|+ |+.+++|
T Consensus       258 la~g~-d~~~~~~  269 (371)
T d1k8kc_         258 VAAGH-DCFPVLF  269 (371)
T ss_dssp             EEEET-TSSCEEE
T ss_pred             EEEEc-CCceEEE
Confidence            87654 7776665

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-35  Score=265.20  Aligned_cols=288  Identities=16%  Similarity=0.120  Sum_probs=216.1

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE---EecCCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 012799          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK---CTGHKNWVLCIAWSAD-GKHLVSGSKAGELQC  176 (456)
Q Consensus       101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~---~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~v  176 (456)
                      ++.+++|++.|++|+|+|++++||+|+.||+|+|||+.++.....   ..+|..+|.+++|+|+ +.+|++|+.||.|++
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence            456789999999999999999999999999999999977654333   3369999999999986 558999999999999


Q ss_pred             EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe----EEEEecCc--CccEEEEEeCC
Q 012799          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----CVICLSGH--TLAVTCVKWGG  250 (456)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~--~~~v~~~~~~~  250 (456)
                      |++..+.........+........+.+     +...+++++.++.+++||++.+.    .......+  ........+.+
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKY-----GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEE-----TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             eeccccccccccccccccccccccccc-----ccccccccccccccceeeccccccceeeecccccccccceeeeeeeec
Confidence            999887766544444444444555555     67899999999999999986432    22233222  22333445555


Q ss_pred             CC-eEEEEeCCCcEEEEECCCCeEEE---EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799          251 DG-VIYTGSQDCTIKVWETTQGKLIR---ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (456)
Q Consensus       251 ~~-~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (456)
                      .+ .+++++.||.|++||++..+...   ..........+..+.+.                                  
T Consensus       159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------  204 (342)
T d1yfqa_         159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK----------------------------------  204 (342)
T ss_dssp             CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSG----------------------------------
T ss_pred             cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecC----------------------------------
Confidence            55 89999999999999998764322   22233344455554443                                  


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCc--------------cccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799          327 NAPERLVSGSDDFTMFLWEPAVSKQPK--------------TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       327 ~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  392 (456)
                       .+..+++++.||.+.+|+........              .....|...+++++|+|++++|++|+.||.|++||+.++
T Consensus       205 -~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         205 -EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             -GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             -CCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence             24569999999999999876443221              122456778999999999999999999999999999999


Q ss_pred             eEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          393 KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       393 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +.+..+..+. .+..+                           +|+|+|++|++|+.|+++++|
T Consensus       284 ~~l~~~~~~~-~~~~~---------------------------~~s~~~~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         284 KKIKNFAKFN-EDSVV---------------------------KIACSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             EEEEECCCCS-SSEEE---------------------------EEEECSSEEEEEEECTHHHHC
T ss_pred             cEEEEecCCC-CCEEE---------------------------EEEeCCCEEEEEEcCCcEEEe
Confidence            9998886432 33345                           679999999999999887766

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-34  Score=263.15  Aligned_cols=265  Identities=25%  Similarity=0.407  Sum_probs=213.7

Q ss_pred             EEEEECCCcEEEEeCCCCcce----eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc-----------
Q 012799          123 LASGSGDTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN-----------  187 (456)
Q Consensus       123 l~~~~~d~~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----------  187 (456)
                      .+.+..++...+|+....+..    ....+|.+.|+|++|+|+|++|++|+ |+.|++||+.+++....           
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP  109 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence            345667788889987654432    23336999999999999999999986 89999999988765331           


Q ss_pred             ------cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCC
Q 012799          188 ------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD  260 (456)
Q Consensus       188 ------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d  260 (456)
                            ....|...|.+++|+|     ++++|++|+.||.|++||...++.+....+|...|.++++++++ .+++++.+
T Consensus       110 ~~~~~~~~~~~~~~V~~l~~s~-----~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  184 (388)
T d1erja_         110 ENLNTSSSPSSDLYIRSVCFSP-----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD  184 (388)
T ss_dssp             ---------CCCCBEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccCCCCCEEEEEECC-----CCCcceecccccccccccccccccccccccccccccccccccccccccccccc
Confidence                  1235677899999999     89999999999999999999999999999999999999999988 89999999


Q ss_pred             CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (456)
Q Consensus       261 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  340 (456)
                      +.+++||.++.........+...+ .+.+.+.                                   ++.++++++.|+.
T Consensus       185 ~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~-----------------------------------~~~~l~~~~~d~~  228 (388)
T d1erja_         185 RTVRIWDLRTGQCSLTLSIEDGVT-TVAVSPG-----------------------------------DGKYIAAGSLDRA  228 (388)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEE-EEEECST-----------------------------------TCCEEEEEETTSC
T ss_pred             eeeeeeeccccccccccccccccc-cccccCC-----------------------------------CCCeEEEEcCCCe
Confidence            999999999988887776555544 4444443                                   2667999999999


Q ss_pred             EEEEecCCCCCC------ccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE------------EEEEeccc
Q 012799          341 MFLWEPAVSKQP------KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF------------VAVFRGHV  402 (456)
Q Consensus       341 i~iwd~~~~~~~------~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~------------~~~~~~~~  402 (456)
                      |++||.......      .....+|...|++++|+|++++|++|+.||.|++||+.+++.            ......|.
T Consensus       229 i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (388)
T d1erja_         229 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK  308 (388)
T ss_dssp             EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS
T ss_pred             EEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeeccccc
Confidence            999998765432      223457889999999999999999999999999999876543            33445677


Q ss_pred             ccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       403 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      ..|.++                           +|+|+|++|++|+.||.|+||
T Consensus       309 ~~v~~~---------------------------~~s~~~~~l~sg~~dg~i~vw  335 (388)
T d1erja_         309 DFVLSV---------------------------ATTQNDEYILSGSKDRGVLFW  335 (388)
T ss_dssp             SCEEEE---------------------------EECGGGCEEEEEETTSEEEEE
T ss_pred             ceEEEE---------------------------EECCCCCEEEEEeCCCEEEEE
Confidence            777777                           999999999999999999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-35  Score=259.93  Aligned_cols=268  Identities=18%  Similarity=0.216  Sum_probs=215.9

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (456)
Q Consensus        99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  178 (456)
                      +++++|+||.++|++++|+|    |++|+.||+|++||+.++     ..+|...|.++++++++ .+++++.|+++++|+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeecccccccc
Confidence            35678999999999999987    999999999999998753     35799999999998654 679999999999999


Q ss_pred             CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEe
Q 012799          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS  258 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~  258 (456)
                      +...+        ....+..+.+.+     ++..++ .+.++.+.+|+..+++.+..+..+ ..+.++....+ .+++++
T Consensus        74 ~~~~~--------~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~v~~  137 (287)
T d1pgua2          74 ITKHE--------FGSQPKVASANN-----DGFTAV-LTNDDDLLILQSFTGDIIKSVRLN-SPGSAVSLSQN-YVAVGL  137 (287)
T ss_dssp             EEEEE--------CSSCEEEEEECS-----SSEEEE-EETTSEEEEEETTTCCEEEEEECS-SCEEEEEECSS-EEEEEE
T ss_pred             ccccc--------cccceeeeeecc-----CCceEE-Eeecccceeeeccceeeeeecccc-ceeeeeeccCc-ceeeec
Confidence            76432        223456677766     554444 556677999999999888877643 44555444332 666666


Q ss_pred             CC-CcEEEEECCCCeEEEEee-cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe
Q 012799          259 QD-CTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (456)
Q Consensus       259 ~d-g~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (456)
                      .+ +.+++|++...+....+. .+...+.+++|+|+                                    +.+|++|+
T Consensus       138 ~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------------------------~~~l~~g~  181 (287)
T d1pgua2         138 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS------------------------------------ETYIAAGD  181 (287)
T ss_dssp             TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTT------------------------------------SSEEEEEE
T ss_pred             cccceeeeeeccccceeeeeeeccCCceeEEEeccC------------------------------------cccccccc
Confidence            65 579999998766655554 46778999999998                                    66799999


Q ss_pred             CCCcEEEEecCCCCCCccccccccccEeEEEECCC----------CCEEEEEECCCcEEEEeCCC-CeEEEEEecccccE
Q 012799          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD----------GQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGPV  405 (456)
Q Consensus       337 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~----------~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v  405 (456)
                      .||.|++||+.........+.+|...|.+++|+|+          +.+|++|+.||.|++||+++ ++.+..+.+|.+.|
T Consensus       182 ~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V  261 (287)
T d1pgua2         182 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV  261 (287)
T ss_dssp             TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE
T ss_pred             ccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCe
Confidence            99999999987766555667889999999999875          46899999999999999977 56777788999999


Q ss_pred             EEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       406 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +++                           +|+|++ .|+++|.||+|++|
T Consensus       262 ~~v---------------------------~~~~~~-~l~s~g~D~~v~iW  284 (287)
T d1pgua2         262 NNL---------------------------LWETPS-TLVSSGADACIKRW  284 (287)
T ss_dssp             EEE---------------------------EEEETT-EEEEEETTSCEEEE
T ss_pred             EEE---------------------------EECCCC-EEEEEECCCeEEEE
Confidence            999                           899986 68999999999999

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.8e-35  Score=265.92  Aligned_cols=307  Identities=16%  Similarity=0.191  Sum_probs=221.1

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcc------eeEEecCCCCEEEEEEc------C-CCCEEEEE
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP------MFKCTGHKNWVLCIAWS------A-DGKHLVSG  168 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~------~~~~~~~~~~v~~~~~~------~-~~~~l~s~  168 (456)
                      ...++|.+.|.++++++  +++++++.|++|+|||..+...      ......|...+..+...      . ++.+++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            34579999999999875  6899999999999999766432      22333455544333321      1 34578899


Q ss_pred             eCCCeEEEEeCCCCCCccc---------cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe--------
Q 012799          169 SKAGELQCWDPQTGKPSGN---------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--------  231 (456)
Q Consensus       169 ~~dg~i~vwd~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------  231 (456)
                      +.||.|++|++........         ....+...+..++|.+......+.++++++.||.+++|++....        
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            9999999999865543221         11234556777888775444456789999999999999974211        


Q ss_pred             ----------EEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEe------ecCCcceEEEEecCccee
Q 012799          232 ----------CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL------KGHGHWVNSLALSTEYAL  295 (456)
Q Consensus       232 ----------~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~i~~~~~~~~~~~  295 (456)
                                .......+...+.+++|+|++.|++|+.||+|++||+.+++.+..+      .+|..+|.+++|+|+   
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd---  242 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ---  242 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS---
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccc---
Confidence                      1111234456689999999999999999999999999999887655      357889999999998   


Q ss_pred             eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc---EEEEecCCCCC------------Ccccccccc
Q 012799          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT---MFLWEPAVSKQ------------PKTRMTGHQ  360 (456)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~------------~~~~~~~~~  360 (456)
                                                       +.+|++|+.|++   |++||+..+..            ....+.+|.
T Consensus       243 ---------------------------------g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~  289 (393)
T d1sq9a_         243 ---------------------------------GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS  289 (393)
T ss_dssp             ---------------------------------TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred             ---------------------------------cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeeccc
Confidence                                             667999999874   89999876542            122345899


Q ss_pred             ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEE----EEeeeeeeecCCCCceeeeccccccccee
Q 012799          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ----IRFELIYCFRYPSNFYCVVDMSCCMSLYS  436 (456)
Q Consensus       361 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (456)
                      ..|++++|+|++++|++|+.||+|++||+.+|+++.++++|.+.|..    +.|....      . ..   ....+-.+.
T Consensus       290 ~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~------~-~~---~~~~~~~~~  359 (393)
T d1sq9a_         290 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG------D-SL---AEPGVFDVK  359 (393)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTS------C-BC---SSCCEEEEE
T ss_pred             CceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCC------C-EE---EEcccceEE
Confidence            99999999999999999999999999999999999999999988753    2111100      0 00   011122334


Q ss_pred             EecC----------CCeEEEeeCCCceEEC
Q 012799          437 WSAD----------SRLLLSGSKDSTLKVT  456 (456)
Q Consensus       437 ~s~d----------g~~l~s~s~Dg~v~iW  456 (456)
                      |.++          .+.|++++.|+.||+|
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~  389 (393)
T d1sq9a_         360 FLKKGWRSGMGADLNESLCCVCLDRSIRWF  389 (393)
T ss_dssp             EECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred             ECccCceeccccCCCCEEEEEEcCCeEEEE
Confidence            5443          3469999999999986

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-34  Score=254.79  Aligned_cols=244  Identities=19%  Similarity=0.222  Sum_probs=201.3

Q ss_pred             CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC
Q 012799          140 QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD  219 (456)
Q Consensus       140 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d  219 (456)
                      |+..+.+.||.+.|++++|+|++++|++|+.||+|++||+++++........|...|.+++|+|     ++. +++++.|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-----~g~-~~~~~~d   75 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-----KGD-LFTVSWD   75 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-----TSC-EEEEETT
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-----cce-eecccce
Confidence            4567788999999999999999999999999999999999999887766678999999999998     665 5677789


Q ss_pred             CcEEEEECCCCeE---EEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceee
Q 012799          220 GDARIWDVSLRKC---VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (456)
Q Consensus       220 g~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  296 (456)
                      +.+++|+......   ......+...+.++++++++.+++++.++.+++|+...  .....  ....+.+++++|+    
T Consensus        76 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~----  147 (299)
T d1nr0a2          76 DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCVALSND----  147 (299)
T ss_dssp             TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEEEECTT----
T ss_pred             eeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccc--ccccc--ccccccccccccc----
Confidence            9999999865321   11123466788999999999666666778999999543  32222  3345678888887    


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA  376 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  376 (456)
                                                      +.++++|+.|+.|++||+............|...|++++|+|++++|+
T Consensus       148 --------------------------------~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  195 (299)
T d1nr0a2         148 --------------------------------KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV  195 (299)
T ss_dssp             --------------------------------SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             --------------------------------cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                            566999999999999998765544445567889999999999999999


Q ss_pred             EEECCCcEEEEeCCCCeEE---EEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799          377 SASFDKSIKLWNGTTGKFV---AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL  453 (456)
Q Consensus       377 s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v  453 (456)
                      +++.||.|++||+.++..+   ..+.+|..+|+++                           +|+|++++|++|+.||.|
T Consensus       196 ~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l---------------------------~~s~~~~~l~sgs~dg~i  248 (299)
T d1nr0a2         196 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV---------------------------SWSPDNVRLATGSLDNSV  248 (299)
T ss_dssp             EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE---------------------------EECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccccccccccccc---------------------------cccccccceEEEcCCCEE
Confidence            9999999999999887654   3456789999999                           899999999999999999


Q ss_pred             EEC
Q 012799          454 KVT  456 (456)
Q Consensus       454 ~iW  456 (456)
                      +||
T Consensus       249 ~iw  251 (299)
T d1nr0a2         249 IVW  251 (299)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.1e-33  Score=247.47  Aligned_cols=250  Identities=18%  Similarity=0.239  Sum_probs=197.7

Q ss_pred             ccccccCC-cccEEEEEECC--CCCeEEEEECCCcEEEEeCCCCccee--------EEecCCCCEEEEEEcCCCCEEEEE
Q 012799          100 CSATIAGH-TEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQTPMF--------KCTGHKNWVLCIAWSADGKHLVSG  168 (456)
Q Consensus       100 ~~~~l~~h-~~~V~~~~~s~--~~~~l~~~~~d~~v~vwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~s~  168 (456)
                      ....+.+| ...|++++|+|  ++++||+|+.||+|+|||+..++...        .+..|.++|.+++|++++++++++
T Consensus        54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  133 (325)
T d1pgua1          54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  133 (325)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence            45567787 56899999998  57899999999999999987654332        245688999999999999999887


Q ss_pred             eC--CCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCC-EEEEEeCCCcEEEEECCCCeEEEEe---cCcCcc
Q 012799          169 SK--AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICL---SGHTLA  242 (456)
Q Consensus       169 ~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~  242 (456)
                      +.  ++.+++|++++++... .+.+|...|.+++|+|     ++. .+++++.|+.+++||....+.....   ..|...
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~  207 (325)
T d1pgua1         134 GEGRDNFGVFISWDSGNSLG-EVSGHSQRINACHLKQ-----SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF  207 (325)
T ss_dssp             ECCSSCSEEEEETTTCCEEE-ECCSCSSCEEEEEECS-----SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCC
T ss_pred             eccccceEEEEeecccccce-eeeecccccccccccc-----cccceEEEeecccccccccccccccceecccccCCCCc
Confidence            64  6789999999888765 5678999999999998     555 4778999999999999888776665   356778


Q ss_pred             EEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799          243 VTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (456)
Q Consensus       243 v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (456)
                      |.+++|+|++  .+++++.||.|++||+++++.+..+.+|..++..+.++...                           
T Consensus       208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~---------------------------  260 (325)
T d1pgua1         208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW---------------------------  260 (325)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE---------------------------
T ss_pred             cEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeec---------------------------
Confidence            9999999974  88899999999999999999999999888877665554210                           


Q ss_pred             hhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc--cccEeEEEECCC-CCEEEEEECCCcEEEEeC
Q 012799          321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH--QQLVNHVYFSPD-GQWVASASFDKSIKLWNG  389 (456)
Q Consensus       321 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~  389 (456)
                            +++.+|++++.|+.|++||+..++ .+..+..|  ...+..+++.+. +.+|++|+.||.|++||+
T Consensus       261 ------~dg~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         261 ------LDSQKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             ------SSSSEEEEEETTSEEEEEETTTTE-EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ------cCCCEEEEEeCCCeEEEEECCCCC-EEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence                  125679999999999999987654 33333333  333344444332 347899999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3e-31  Score=237.39  Aligned_cols=269  Identities=24%  Similarity=0.440  Sum_probs=227.7

Q ss_pred             cCcccEEEEEEeccc----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--
Q 012799           76 VSVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--  141 (456)
Q Consensus        76 ~~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--  141 (456)
                      .|...+..+.|.|+.          .+++|..  +...+.+.+|..+|.+++|+|+++++++|+.|+.+++|+.....  
T Consensus        53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  132 (340)
T d1tbga_          53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN  132 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccc
Confidence            477888999998864          4556653  45678899999999999999999999999999999999976543  


Q ss_pred             --ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC
Q 012799          142 --PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD  219 (456)
Q Consensus       142 --~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d  219 (456)
                        ....+.+|.......... .+..+.....|.....+......... ....+...+....+.+     .+..+++++.|
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~d  205 (340)
T d1tbga_         133 VRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTT-TFTGHTGDVMSLSLAP-----DTRLFVSGACD  205 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEE-EEECCSSCEEEEEECT-----TSSEEEEEETT
T ss_pred             cccceecccccccccccccc-cccccccccccccccccccccccccc-cccccceeEeeecccc-----ccceeEEeecC
Confidence              345566777776666655 45577888889999999887665443 4555667788888887     78899999999


Q ss_pred             CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceee
Q 012799          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALR  296 (456)
Q Consensus       220 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~  296 (456)
                      +.|++||+++++++..+.+|...|++++|+|++ .|++|+.||.|++||++.......+.  .+...+.+++|+|+    
T Consensus       206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----  281 (340)
T d1tbga_         206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS----  281 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSS----
T ss_pred             ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCC----
Confidence            999999999999999999999999999999998 99999999999999999988877663  45667999999998    


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA  376 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  376 (456)
                                                      +.+|++|+.||.|++||+.+. .....+.+|..+|++++|+|++++|+
T Consensus       282 --------------------------------~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~H~~~V~~l~~s~d~~~l~  328 (340)
T d1tbga_         282 --------------------------------GRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             --------------------------------SCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             --------------------------------CCEEEEEECCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence                                            566999999999999997654 45667889999999999999999999


Q ss_pred             EEECCCcEEEEe
Q 012799          377 SASFDKSIKLWN  388 (456)
Q Consensus       377 s~~~dg~i~iwd  388 (456)
                      +|+.||.|+|||
T Consensus       329 s~s~Dg~v~iWd  340 (340)
T d1tbga_         329 TGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTSCEEEEC
T ss_pred             EEccCCEEEEeC
Confidence            999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.5e-30  Score=228.66  Aligned_cols=254  Identities=21%  Similarity=0.310  Sum_probs=193.4

Q ss_pred             cceEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCC--CCEEEEEEcCCCCE
Q 012799           89 QAVFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK--NWVLCIAWSADGKH  164 (456)
Q Consensus        89 ~~~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~  164 (456)
                      +..+++|..  +++.++|.+|.++|++++|+|+ .+|++|+.|++|++|+....+.......+.  .......+.+++.+
T Consensus        32 Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (355)
T d1nexb2          32 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY  110 (355)
T ss_dssp             TTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccce
Confidence            345566653  4678899999999999999986 589999999999999999887666554333  33455667788888


Q ss_pred             EEEEeCCCeEEEEeCCCCCCccc---------------------------------------------------------
Q 012799          165 LVSGSKAGELQCWDPQTGKPSGN---------------------------------------------------------  187 (456)
Q Consensus       165 l~s~~~dg~i~vwd~~~~~~~~~---------------------------------------------------------  187 (456)
                      +++++.|+.|++||+.++.....                                                         
T Consensus       111 ~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~  190 (355)
T d1nexb2         111 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ  190 (355)
T ss_dssp             EEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             eeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeeccc
Confidence            99999999999998865432100                                                         


Q ss_pred             -----cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCc
Q 012799          188 -----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCT  262 (456)
Q Consensus       188 -----~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~  262 (456)
                           ...++...+.++.|+|     ++..+++++.|+.|++||++++..+..+.+|...|.+++++++ .+++++.||.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~-~l~~~~~dg~  264 (355)
T d1nexb2         191 MKCLYILSGHTDRIYSTIYDH-----ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK-FLVSAAADGS  264 (355)
T ss_dssp             TEEEEEECCCSSCEEEEEEET-----TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSS-EEEEECTTSE
T ss_pred             ccceeeeeccccccccccccc-----cceeeecccccceEEeeeccccccccccccccccccccccccc-eeeeeecccc
Confidence                 1112344455566666     7889999999999999999999999999999999999999864 8999999999


Q ss_pred             EEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEE
Q 012799          263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (456)
Q Consensus       263 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  342 (456)
                      |++||++++.....  .|...+.++.+.+.                                   ++. +++++.|+.|+
T Consensus       265 i~iwd~~~~~~~~~--~~~~~~~~~~~~~~-----------------------------------~~~-~l~~g~d~~i~  306 (355)
T d1nexb2         265 IRGWDANDYSRKFS--YHHTNLSAITTFYV-----------------------------------SDN-ILVSGSENQFN  306 (355)
T ss_dssp             EEEEETTTCCEEEE--EECTTCCCCCEEEE-----------------------------------CSS-EEEEEETTEEE
T ss_pred             cccccccccceecc--cccCCceEEEEEcC-----------------------------------CCC-EEEEEeCCEEE
Confidence            99999998765433  34444554443322                                   133 44555689999


Q ss_pred             EEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (456)
Q Consensus       343 iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  388 (456)
                      +||+++++.....+.+|...|.+++|+|+ .++++++.||.++||.
T Consensus       307 vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         307 IYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             EEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            99998877665667889999999999987 5788899999877664

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=1e-29  Score=229.29  Aligned_cols=266  Identities=14%  Similarity=0.055  Sum_probs=203.0

Q ss_pred             EEEECC-CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCCCccccc
Q 012799          113 SVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPSGNPL  189 (456)
Q Consensus       113 ~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~  189 (456)
                      .-.||| ||+++|+++ +|.|++||+.++.... + +|...|.+++|+|||++|++++.+.  .|++||.++++..  .+
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~--~~   81 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE--KF   81 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE--EC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE--Ee
Confidence            467999 999999986 5799999998776554 3 6999999999999999998876553  7999999988765  46


Q ss_pred             cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE----------e
Q 012799          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG----------S  258 (456)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~----------~  258 (456)
                      ..|...+.+++|+|     +++++++++.++.+++|++.+++....+..|...+.+++|+|+| .|+.+          .
T Consensus        82 ~~~~~~v~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~  156 (360)
T d1k32a3          82 EENLGNVFAMGVDR-----NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY  156 (360)
T ss_dssp             CCCCCSEEEEEECT-----TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred             eCCCceEEeeeecc-----cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence            78999999999999     99999999999999999999999999999999999999999999 66543          3


Q ss_pred             CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (456)
                      .++.+++||+.+++..... .+...+..+.++|++                                    ++|++++.+
T Consensus       157 ~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg------------------------------------~~l~~~s~~  199 (360)
T d1k32a3         157 VMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADS------------------------------------KNLYYLSYR  199 (360)
T ss_dssp             CEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTS------------------------------------CEEEEEESC
T ss_pred             cccceeeeccccCceeeec-ccccccccccccCCC------------------------------------CEEEEEeCC
Confidence            3456999999988765544 466778889999984                                    446666666


Q ss_pred             CcEEEEecCCCC----------------------------------------------------CCccccccccccEeEE
Q 012799          339 FTMFLWEPAVSK----------------------------------------------------QPKTRMTGHQQLVNHV  366 (456)
Q Consensus       339 g~i~iwd~~~~~----------------------------------------------------~~~~~~~~~~~~v~~~  366 (456)
                      +.+.+||.....                                                    .....+..+.+.+..+
T Consensus       200 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (360)
T d1k32a3         200 SLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY  279 (360)
T ss_dssp             CCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEE
T ss_pred             CceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEE
Confidence            666666532110                                                    0000111122222223


Q ss_pred             EECCC---CCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCe
Q 012799          367 YFSPD---GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL  443 (456)
Q Consensus       367 ~~sp~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  443 (456)
                      .+.+.   +.++++++.++.+++||+.+++..    .|.+.|.++                           +|||||++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~---------------------------~~SpDG~~  328 (360)
T d1k32a3         280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDL---------------------------RLSADRKT  328 (360)
T ss_dssp             ECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEE---------------------------EECTTSCE
T ss_pred             EEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEE---------------------------EECCCCCE
Confidence            33322   224566777899999999887643    345568888                           89999999


Q ss_pred             EEEeeCCCceEEC
Q 012799          444 LLSGSKDSTLKVT  456 (456)
Q Consensus       444 l~s~s~Dg~v~iW  456 (456)
                      |++++.||.|++|
T Consensus       329 l~~~~~Dg~i~v~  341 (360)
T d1k32a3         329 VMVRKDDGKIYTF  341 (360)
T ss_dssp             EEEEETTSCEEEE
T ss_pred             EEEEECCCeEEEE
Confidence            9999999999998

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.4e-29  Score=221.99  Aligned_cols=279  Identities=23%  Similarity=0.395  Sum_probs=184.2

Q ss_pred             EeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEE
Q 012799          135 WDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV  214 (456)
Q Consensus       135 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  214 (456)
                      |+..+.++...+++|.+.|.+ +++++|++|+||+.||+|+|||+.+++.+. .+.+|...|.+++|+|       ++++
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~-~~~~h~~~V~~v~~~~-------~~l~   71 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR-TLVGHTGGVWSSQMRD-------NIII   71 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE-ECCCCSSCEEEEEEET-------TEEE
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE-EEeCCCCCEEEEEeCC-------Cccc
Confidence            566667788889999999865 356688999999999999999999998775 6788999999999977       5899


Q ss_pred             EEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcce
Q 012799          215 SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA  294 (456)
Q Consensus       215 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  294 (456)
                      +++.|+.+++|+............+...+......+. .+..+..|+.+.+|+..+++....+.................
T Consensus        72 s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (342)
T d2ovrb2          72 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV  150 (342)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCE
T ss_pred             cceecccccccccccccceecccccceeEeeeecccc-cccccccceeEEEeecccccceeeeecccccceeecccccee
Confidence            9999999999999877766655555544444433322 444455555555555555444433332222222222211111


Q ss_pred             eeeccccCCCCccCChHHHHHH---HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCC
Q 012799          295 LRTGAFDHTGKQYSSPEEMKKA---ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD  371 (456)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~  371 (456)
                      .... .+.....+.........   ...........++.++++++.||.|++||++... ......+|...+.+++++  
T Consensus       151 ~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~--  226 (342)
T d2ovrb2         151 VSGA-YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMELK--  226 (342)
T ss_dssp             EEEE-TTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC-EEEEECCCCSCEEEEEEE--
T ss_pred             eeec-CCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccce-eeeEecccccceeEEecC--
Confidence            1000 00000000000000000   0000000011235679999999999999976654 566678899999888876  


Q ss_pred             CCEEEEEECCCcEEEEeCCCCeEEEEEecc---cccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEee
Q 012799          372 GQWVASASFDKSIKLWNGTTGKFVAVFRGH---VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS  448 (456)
Q Consensus       372 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s  448 (456)
                      +++|++|+.||.|++||+...+....+..+   ...+.++                             +++++++++|+
T Consensus       227 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~s~s  277 (342)
T d2ovrb2         227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL-----------------------------QFNKNFVITSS  277 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE-----------------------------EECSSEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEecccccccccccccceeeeceeec-----------------------------ccCCCeeEEEc
Confidence            469999999999999999999888877754   3455444                             55668999999


Q ss_pred             CCCceEEC
Q 012799          449 KDSTLKVT  456 (456)
Q Consensus       449 ~Dg~v~iW  456 (456)
                      .||+|+||
T Consensus       278 ~Dg~i~iw  285 (342)
T d2ovrb2         278 DDGTVKLW  285 (342)
T ss_dssp             TTSEEEEE
T ss_pred             CCCEEEEE
Confidence            99999999

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3e-29  Score=229.21  Aligned_cols=246  Identities=18%  Similarity=0.213  Sum_probs=176.3

Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc-----cccCcccceEEEEecccc--cCCCCCEEEEEe
Q 012799          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN-----PLSGHKKWITGISWEPVH--LNAPCRRFVSAS  217 (456)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~--~~~~~~~l~~~~  217 (456)
                      ..++|...|.++++++  +++++++.|++|++||..+.+....     ....|...+..+......  ...++..+++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            3468999999999864  6999999999999999876553211     111233332222221100  011335678999


Q ss_pred             CCCcEEEEECCCCeE---E--EEe-----cCcCccEEEEEeCCC-----C-eEEEEeCCCcEEEEECCCCe---------
Q 012799          218 KDGDARIWDVSLRKC---V--ICL-----SGHTLAVTCVKWGGD-----G-VIYTGSQDCTIKVWETTQGK---------  272 (456)
Q Consensus       218 ~dg~i~iwd~~~~~~---~--~~~-----~~~~~~v~~~~~~~~-----~-~l~~~~~dg~i~iwd~~~~~---------  272 (456)
                      .||.|++|++.....   .  ...     ..+...+..+++.++     + .+++++.||.+++|++....         
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            999999999754321   1  111     124456777777654     2 78899999999999974321         


Q ss_pred             ------E---EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEE
Q 012799          273 ------L---IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (456)
Q Consensus       273 ------~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  343 (456)
                            .   ......+...+.+++++|++                                     ++++|+.|+.|++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-------------------------------------~lasgs~Dg~i~i  209 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG-------------------------------------LIATGFNNGTVQI  209 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-------------------------------------EEEEECTTSEEEE
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC-------------------------------------EEEEEeCCCcEEE
Confidence                  0   11112344557788888762                                     5899999999999


Q ss_pred             EecCCCCCC-----ccccccccccEeEEEECCCCCEEEEEECCCc---EEEEeCCCCeEEEEEe-------------ccc
Q 012799          344 WEPAVSKQP-----KTRMTGHQQLVNHVYFSPDGQWVASASFDKS---IKLWNGTTGKFVAVFR-------------GHV  402 (456)
Q Consensus       344 wd~~~~~~~-----~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~-------------~~~  402 (456)
                      ||+.+.+..     ...+.+|..+|++++|+|+|++|++|+.|++   |++||+.+++.+..+.             +|.
T Consensus       210 wd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~  289 (393)
T d1sq9a_         210 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS  289 (393)
T ss_dssp             EETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred             EeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeeccc
Confidence            998765432     2345689999999999999999999999874   9999999999888774             788


Q ss_pred             ccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       403 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      +.|+++                           +|+||+++|+|||.|++|+||
T Consensus       290 ~~V~~l---------------------------~fspd~~~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         290 SWVMSL---------------------------SFNDSGETLCSAGWDGKLRFW  316 (393)
T ss_dssp             SCEEEE---------------------------EECSSSSEEEEEETTSEEEEE
T ss_pred             Cceeee---------------------------ccCCCCCeeEEECCCCEEEEE
Confidence            899999                           999999999999999999999

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-28  Score=214.65  Aligned_cols=266  Identities=13%  Similarity=0.115  Sum_probs=204.6

Q ss_pred             cCcccEEEEEEec------cceEEEeecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecC
Q 012799           76 VSVEKVLSIVYQP------QAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH  149 (456)
Q Consensus        76 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~  149 (456)
                      .|..++..+.|+|      +..+++|...   ....+|...|.++++++++ .+++++.|+++++|++...+       .
T Consensus        11 gH~~~I~~l~~s~l~sgs~Dg~v~~Wd~~---~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-------~   79 (287)
T d1pgua2          11 GHNKGITALTVNPLISGSYDGRIMEWSSS---SMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-------F   79 (287)
T ss_dssp             CCSSCEEEEETTTTEEEETTSCEEETTTT---EEECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-------C
T ss_pred             CCCCceEEEEECcEEEEeCCCeEEEEECC---CCCCCCCCCEEEEEecCCC-eEEEEeeccccccccccccc-------c
Confidence            3566677777766      4455666543   3457899999999999765 57899999999999975421       3


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC-cEEEEECC
Q 012799          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG-DARIWDVS  228 (456)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~  228 (456)
                      ...+.++++++++..++++ .++.+.+|+..+++.... . .+...+.  ++.+     ++..+++++.++ .+++|++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~-~~~~~~~--~~~~-----~~~~~~v~~~~~~~v~~~~~~  149 (287)
T d1pgua2          80 GSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKS-V-RLNSPGS--AVSL-----SQNYVAVGLEEGNTIQVFKLS  149 (287)
T ss_dssp             SSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEE-E-ECSSCEE--EEEE-----CSSEEEEEETTTSCEEEEETT
T ss_pred             ccceeeeeeccCCceEEEe-ecccceeeeccceeeeee-c-cccceee--eeec-----cCcceeeeccccceeeeeecc
Confidence            4567888999888766665 556788999888776542 2 2223333  4444     667888888765 79999998


Q ss_pred             CCeEEEEec-CcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEE-eecCCcceEEEEecCcceeeeccccCCCC
Q 012799          229 LRKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (456)
Q Consensus       229 ~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  305 (456)
                      ..+....+. .+...+++++|+|++ +|++|+.||.|++||+.+++.... +..|..+|.+++|+|.....         
T Consensus       150 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~---------  220 (287)
T d1pgua2         150 DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA---------  220 (287)
T ss_dssp             EEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------------
T ss_pred             ccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccccc---------
Confidence            777666654 477889999999999 899999999999999999887654 57789999999999875321         


Q ss_pred             ccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEE
Q 012799          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK  385 (456)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~  385 (456)
                                       .....++.++++|+.|+.|++||+.........+.+|...|++++|+|++ .|++++.||.|+
T Consensus       221 -----------------~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~  282 (287)
T d1pgua2         221 -----------------NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIK  282 (287)
T ss_dssp             --------------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEE
T ss_pred             -----------------ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEE
Confidence                             11223467899999999999999988777777788999999999999986 588999999999


Q ss_pred             EEeC
Q 012799          386 LWNG  389 (456)
Q Consensus       386 iwd~  389 (456)
                      +|++
T Consensus       283 iW~i  286 (287)
T d1pgua2         283 RWNV  286 (287)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-27  Score=206.56  Aligned_cols=248  Identities=27%  Similarity=0.503  Sum_probs=203.1

Q ss_pred             cceEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE
Q 012799           89 QAVFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV  166 (456)
Q Consensus        89 ~~~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  166 (456)
                      +..+++|..  +++.++|++|.+.|++++|  ++++|++|+.|+.|++|++..+........+....  ..+.+....++
T Consensus        34 Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  109 (293)
T d1p22a2          34 DNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMV  109 (293)
T ss_dssp             SSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE--EEEECCTTEEE
T ss_pred             CCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccccc--cccccccccee
Confidence            344566653  5678899999999999987  57899999999999999999888777766554443  34445677899


Q ss_pred             EEeCCCeEEEEeCCCCCCcc--ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEE
Q 012799          167 SGSKAGELQCWDPQTGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT  244 (456)
Q Consensus       167 s~~~dg~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  244 (456)
                      ++..++.+.+|+........  .....|...+....+.+       ..+++++.|+.|++||+++++.+..+.++...+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~  182 (293)
T d1p22a2         110 TCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-------KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA  182 (293)
T ss_dssp             EEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET-------TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             ecccccceeEeeccccccccccccccccccccccceecc-------cccccccCCCceeeecCCCCcEEEEEcccccccc
Confidence            99999999999998765432  23466778888877755       6789999999999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799          245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (456)
Q Consensus       245 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (456)
                      .+.+++. .+++++.||.|++||+++.+.+.....+...+......                                  
T Consensus       183 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~----------------------------------  227 (293)
T d1p22a2         183 CLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD----------------------------------  227 (293)
T ss_dssp             EEEEETT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECC----------------------------------
T ss_pred             cccCCCC-eEEEecCCCEEEEEecccceeeeeecccceeeeecccc----------------------------------
Confidence            9888754 89999999999999999999999998888877765443                                  


Q ss_pred             cCCCCCEEEEEeCCCcEEEEecCCCC--------CCccccccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799          325 KGNAPERLVSGSDDFTMFLWEPAVSK--------QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (456)
Q Consensus       325 ~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  388 (456)
                          +.++++++.||.|++||+....        .....+.+|.+.|++++|+  +++|++|+.||+|++||
T Consensus       228 ----~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         228 ----NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ----SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             ----ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence                4569999999999999964322        2345667899999999994  66899999999999998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=3e-27  Score=212.97  Aligned_cols=287  Identities=13%  Similarity=0.049  Sum_probs=201.7

Q ss_pred             CCcccEEEEEECCCCCeEEEEECCC--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 012799          106 GHTEAVLSVAFSPDGRQLASGSGDT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  183 (456)
                      +|...|.+++|+|||++|++++.+.  .|++||..+++. ..+..|...|.+++|+|++++|++++.++.+++|+..+++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence            7999999999999999998876553  799999987664 4667899999999999999999999999999999999887


Q ss_pred             CccccccCcccceEEEEecccccCCCCCEEEEEe----------CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-
Q 012799          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-  252 (456)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  252 (456)
                      ... ....|...+.+++|+|     +|++|+.+.          .++.+++||+.+++... +..+...+..++|+|+| 
T Consensus       119 ~~~-~~~~~~~~~~~~~~sp-----dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~  191 (360)
T d1k32a3         119 PTV-IERSREAMITDFTISD-----NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSK  191 (360)
T ss_dssp             EEE-EEECSSSCCCCEEECT-----TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSC
T ss_pred             eee-eeecccccccchhhcc-----ceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCC
Confidence            654 5677888899999999     999998653          34569999999887654 44567788999999999 


Q ss_pred             eEEEEeCCCcEEEEECCCCeE-------EEEeecCCcceEEEEecCcceeeec-cccCCCC---c--cCChHHHHHHHH-
Q 012799          253 VIYTGSQDCTIKVWETTQGKL-------IRELKGHGHWVNSLALSTEYALRTG-AFDHTGK---Q--YSSPEEMKKAAL-  318 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~---~--~~~~~~~~~~~~-  318 (456)
                      .|++++.++.+.+||......       ...+..+......+.++++...... ..+....   .  +........... 
T Consensus       192 ~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (360)
T d1k32a3         192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP  271 (360)
T ss_dssp             EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEE
T ss_pred             EEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeee
Confidence            899999999999999765432       2222223333333334443322111 0000000   0  000000000000 


Q ss_pred             --hhh----hhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799          319 --ERY----NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (456)
Q Consensus       319 --~~~----~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  392 (456)
                        ...    ....+....++++++.++.+++||+...+     ...|.+.|.+++|||||++|++++.||.|++||++++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----~~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~  346 (360)
T d1k32a3         272 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP  346 (360)
T ss_dssp             CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC-----EEEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred             cCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe-----EEEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence              000    00001111234566678899999976543     2345667999999999999999999999999999999


Q ss_pred             eEEEEEecccccE
Q 012799          393 KFVAVFRGHVGPV  405 (456)
Q Consensus       393 ~~~~~~~~~~~~v  405 (456)
                      +...++..+..|+
T Consensus       347 ~~~~~~~~d~~~~  359 (360)
T d1k32a3         347 EDERTVETDKRPL  359 (360)
T ss_dssp             TSCEECCCCSSCE
T ss_pred             CcceEEEeccccc
Confidence            8877776665554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.5e-28  Score=215.16  Aligned_cols=248  Identities=13%  Similarity=0.091  Sum_probs=178.6

Q ss_pred             ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc--cccCcccceEEEEecccccCCCCCEEEEEeCC
Q 012799          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN--PLSGHKKWITGISWEPVHLNAPCRRFVSASKD  219 (456)
Q Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d  219 (456)
                      .+...++|++.|++|+|+|++++||+|+.||+|+|||++++.....  ...+|...|.+++|+|.    ++.++++|+.|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~----~~~~l~sg~~d   78 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN----TDLQIYVGTVQ   78 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES----SSEEEEEEETT
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCC----CCCEEEEcccc
Confidence            3455678999999999999999999999999999999987654322  23468999999999982    34589999999


Q ss_pred             CcEEEEECCCCeEEEEecCcCccE-EEEEeCCCC-eEEEEeCCCcEEEEECCCCeE----EEEeecC--CcceEEEEecC
Q 012799          220 GDARIWDVSLRKCVICLSGHTLAV-TCVKWGGDG-VIYTGSQDCTIKVWETTQGKL----IRELKGH--GHWVNSLALST  291 (456)
Q Consensus       220 g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~----~~~~~~~--~~~i~~~~~~~  291 (456)
                      |.|++|++...........+.... ....+.++. .+++++.++.+++||++.+..    ......+  ........+.+
T Consensus        79 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (342)
T d1yfqa_          79 GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             cceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec
Confidence            999999999887777665544433 333334344 999999999999999865432    2222211  11222233333


Q ss_pred             cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc--ccccccccEeEEEEC
Q 012799          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT--RMTGHQQLVNHVYFS  369 (456)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~s  369 (456)
                      .                                    +..+++++.|+.|++||+........  ....+...+.+..+.
T Consensus       159 ~------------------------------------~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (342)
T d1yfqa_         159 N------------------------------------SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL  202 (342)
T ss_dssp             C------------------------------------SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC
T ss_pred             c------------------------------------CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEee
Confidence            2                                    55699999999999999876554322  223344455565555


Q ss_pred             C-CCCEEEEEECCCcEEEEeCCCCeEE------EE---------EecccccEEEEEeeeeeeecCCCCceeeeccccccc
Q 012799          370 P-DGQWVASASFDKSIKLWNGTTGKFV------AV---------FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS  433 (456)
Q Consensus       370 p-~~~~l~s~~~dg~i~iwd~~~~~~~------~~---------~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~  433 (456)
                      + ++..+++++.||.+.+|+.......      ..         ...|...++++                         
T Consensus       203 ~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l-------------------------  257 (342)
T d1yfqa_         203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI-------------------------  257 (342)
T ss_dssp             SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE-------------------------
T ss_pred             cCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeE-------------------------
Confidence            4 6788999999999999987653221      11         12344566666                         


Q ss_pred             ceeEecCCCeEEEeeCCCceEEC
Q 012799          434 LYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       434 ~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                        +|+|++++|+||+.||.|+||
T Consensus       258 --~~sp~~~~lasg~~Dg~v~vW  278 (342)
T d1yfqa_         258 --EFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             --EECTTTCCEEEEETTSCEEEE
T ss_pred             --EecCCccEEEEECCCCEEEEE
Confidence              999999999999999999999

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=1.4e-25  Score=206.84  Aligned_cols=309  Identities=13%  Similarity=0.071  Sum_probs=208.9

Q ss_pred             EEEEEEeccceEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE-----ecCCCCE
Q 012799           81 VLSIVYQPQAVFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-----TGHKNWV  153 (456)
Q Consensus        81 ~~~~~~~~~~~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-----~~~~~~v  153 (456)
                      .+.+.-..+..+++|..  ++.++++..|. .+..++|||||++|++++.|++|++||+.+++.....     .+|...+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            34455556667777764  45678888875 5899999999999999999999999999988754432     2566667


Q ss_pred             EEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCCccccccCcccc-----------eEEEEecccccCCCCCEEEEEeC-CC
Q 012799          154 LCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSGNPLSGHKKW-----------ITGISWEPVHLNAPCRRFVSASK-DG  220 (456)
Q Consensus       154 ~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~~~~~l~~~~~-dg  220 (456)
                      .+++|+|||+++++ +..++.+++||..++.... ....|...           ...+.+++     ++..++.... .+
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~-----d~~~~~~~~~~~~  185 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ-IVSTRGMTVDTQTYHPEPRVAAIIASH-----EHPEFIVNVKETG  185 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE-EEECCEECSSSCCEESCCCEEEEEECS-----SSSEEEEEETTTT
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCccceeE-EeeccCCCccceeecCCCceeEEEECC-----CCCEEEEecCCCC
Confidence            78888899998755 4578999999999887654 23333333           33344444     4444444333 34


Q ss_pred             cEEEEECCCCeE-EEEecCcCccEEEEEeCCCC-eEEEE-eCCCcEEEEECCCCeEEEEeecCCc--ceEEEEecCccee
Q 012799          221 DARIWDVSLRKC-VICLSGHTLAVTCVKWGGDG-VIYTG-SQDCTIKVWETTQGKLIRELKGHGH--WVNSLALSTEYAL  295 (456)
Q Consensus       221 ~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~~  295 (456)
                      .+.+++...... ......+...+..+.++|++ +++++ ..+..+.+++..+++.+........  +.....+..... 
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  264 (426)
T d1hzua2         186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY-  264 (426)
T ss_dssp             EEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTT-
T ss_pred             eEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCC-
Confidence            455555544332 22233467778899999998 54444 4567799999999998877654322  112222211100 


Q ss_pred             eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC------CCccccccccccEeEEEEC
Q 012799          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK------QPKTRMTGHQQLVNHVYFS  369 (456)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~s  369 (456)
                                                      .....+....|+.+.+|+.....      .....+.+|...+..++|+
T Consensus       265 --------------------------------~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~s  312 (426)
T d1hzua2         265 --------------------------------GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH  312 (426)
T ss_dssp             --------------------------------EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECC
T ss_pred             --------------------------------CceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcC
Confidence                                            01113344567888888754432      3344567899999999999


Q ss_pred             CCCCEEEE-------EECCCcEEEEeCCCCeEEEEEe---------cccccEEEEEeeeeeeecCCCCceeeeccccccc
Q 012799          370 PDGQWVAS-------ASFDKSIKLWNGTTGKFVAVFR---------GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS  433 (456)
Q Consensus       370 p~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~  433 (456)
                      ||+++|++       ++.|++|++||+.+++...++.         .|...|..+                         
T Consensus       313 Pdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~-------------------------  367 (426)
T d1hzua2         313 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP-------------------------  367 (426)
T ss_dssp             TTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEE-------------------------
T ss_pred             CCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEE-------------------------
Confidence            99999994       5567899999999988766553         344457777                         


Q ss_pred             ceeEecCCCeEE-E----eeCCCceEEC
Q 012799          434 LYSWSADSRLLL-S----GSKDSTLKVT  456 (456)
Q Consensus       434 ~~~~s~dg~~l~-s----~s~Dg~v~iW  456 (456)
                        +|||||++++ +    ++.||.|+||
T Consensus       368 --~fSpDGk~i~vs~~~~~~~~~~i~v~  393 (426)
T d1hzua2         368 --EYNKRGDEVWFSVWNGKNDSSALVVV  393 (426)
T ss_dssp             --EECSSSSEEEEEECCCTTSCCEEEEE
T ss_pred             --EECCCCCEEEEEEecCCCCCCeEEEE
Confidence              8999999764 3    2468889998

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=2.6e-23  Score=182.08  Aligned_cols=258  Identities=11%  Similarity=0.119  Sum_probs=196.3

Q ss_pred             EEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCccccccCcccceEEEEe
Q 012799          123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISW  201 (456)
Q Consensus       123 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~  201 (456)
                      .++++.|++|.+||+.+++.+.++.. ...+..++|+|||++|+ +++.++.|++||+.+++.+.. +..+ ..+..+.|
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-~~~~-~~~~~~~~   81 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-VPAG-SSPQGVAV   81 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-EECS-SSEEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-eecc-cccccccc
Confidence            34567889999999999998888874 35678999999999875 666789999999999887653 3333 34678888


Q ss_pred             cccccCCCCCEEE-EEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEee
Q 012799          202 EPVHLNAPCRRFV-SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELK  278 (456)
Q Consensus       202 ~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~  278 (456)
                      ++     ++..++ ++..++.+.+|+..+++....+..+ ....++.++|++  .++++..++.+.+|+..+++....+.
T Consensus        82 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (301)
T d1l0qa2          82 SP-----DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS  155 (301)
T ss_dssp             CT-----TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cc-----ccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc
Confidence            88     777555 4556789999999999988887644 567889999998  44566678899999999999888887


Q ss_pred             cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-CCcEEEEecCCCCCCccccc
Q 012799          279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKTRMT  357 (456)
Q Consensus       279 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~  357 (456)
                      .+ .....+.++++                                    +..+++++. ++.+.+|+... ....... 
T Consensus       156 ~~-~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-  196 (301)
T d1l0qa2         156 VG-RSPKGIAVTPD------------------------------------GTKVYVANFDSMSISVIDTVT-NSVIDTV-  196 (301)
T ss_dssp             CC-SSEEEEEECTT------------------------------------SSEEEEEETTTTEEEEEETTT-TEEEEEE-
T ss_pred             cC-CCceEEEeecc------------------------------------ccceeeecccccccccccccc-eeeeecc-
Confidence            54 44677888887                                    344555555 45666776433 3233322 


Q ss_pred             cccccEeEEEECCCCCEEEEEEC---CCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccc
Q 012799          358 GHQQLVNHVYFSPDGQWVASASF---DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSL  434 (456)
Q Consensus       358 ~~~~~v~~~~~sp~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (456)
                      .....+..++|+++++.++.++.   ++.|++||..+++.+..+..+ ..+.++                          
T Consensus       197 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~v--------------------------  249 (301)
T d1l0qa2         197 KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGI--------------------------  249 (301)
T ss_dssp             ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEE--------------------------
T ss_pred             cccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEE--------------------------
Confidence            33455788999999998776543   468999999999999888754 456788                          


Q ss_pred             eeEecCCCeE-EEeeCCCceEEC
Q 012799          435 YSWSADSRLL-LSGSKDSTLKVT  456 (456)
Q Consensus       435 ~~~s~dg~~l-~s~s~Dg~v~iW  456 (456)
                       +|+|||++| ++++.|++|+||
T Consensus       250 -a~spdg~~l~va~~~~~~i~v~  271 (301)
T d1l0qa2         250 -AVTPDGKKVYVALSFCNTVSVI  271 (301)
T ss_dssp             -EECTTSSEEEEEETTTTEEEEE
T ss_pred             -EEeCCCCEEEEEECCCCeEEEE
Confidence             899999976 677889999998

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=4.1e-25  Score=203.14  Aligned_cols=334  Identities=14%  Similarity=0.050  Sum_probs=219.1

Q ss_pred             ccEEEEEEeccceEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce--eEE---ecCCC
Q 012799           79 EKVLSIVYQPQAVFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKC---TGHKN  151 (456)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~--~~~---~~~~~  151 (456)
                      ...+.+.-.++..+.++..  +++.+++..|. .+..++|||||+++++++.|++|++||+.+++..  ..+   .+|.+
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            3455666777777777754  46788888774 6999999999999999999999999999887643  222   24666


Q ss_pred             CEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCcccc----------ccCcccceEEEEecccccCCCCCEE-EEEeCC
Q 012799          152 WVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNP----------LSGHKKWITGISWEPVHLNAPCRRF-VSASKD  219 (456)
Q Consensus       152 ~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~~l-~~~~~d  219 (456)
                      .+.+..|+|||++| ++++.++.|++||..+++.....          ...+......+.++|     ++..+ ++...+
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-----dg~~~~vs~~~~  184 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-----YRPEFIVNVKET  184 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-----SSSEEEEEETTT
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC-----CCCEEEEEEccC
Confidence            67777888999986 67888999999999998765421          112344566777877     77765 456668


Q ss_pred             CcEEEEECCCCeEEEEec-CcCccEEEEEeCCCC-eEEEEeC-CCcEEEEECCCCeEEEEeec-----CCcceEEEEecC
Q 012799          220 GDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQ-DCTIKVWETTQGKLIRELKG-----HGHWVNSLALST  291 (456)
Q Consensus       220 g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~-dg~i~iwd~~~~~~~~~~~~-----~~~~i~~~~~~~  291 (456)
                      +.|.+||..+.+...... .+...+.+++++|+| ++++++. ++.+.++|..+++.+..+..     +...........
T Consensus       185 ~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  264 (432)
T d1qksa2         185 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT  264 (432)
T ss_dssp             TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT
T ss_pred             CeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC
Confidence            999999998876544322 345678899999999 5655554 56899999999888776642     222222222222


Q ss_pred             cceeeeccccCCC--CccCChHH-HHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEE
Q 012799          292 EYALRTGAFDHTG--KQYSSPEE-MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF  368 (456)
Q Consensus       292 ~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  368 (456)
                      .+...........  ..+..... ...........+..+++..+++++.+...++|+....       ..|.....++++
T Consensus       265 ~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~-------~~~~~~~~sv~v  337 (432)
T d1qksa2         265 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL-------NPEAEISGSVAV  337 (432)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT-------CSSHHHHTCEEE
T ss_pred             CCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccC-------CCCCCeeeEEEE
Confidence            2221111110000  00000000 0000001112234556677888888888889974322       233333445555


Q ss_pred             CCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEee
Q 012799          369 SPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS  448 (456)
Q Consensus       369 sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s  448 (456)
                       ||++.|++++.|+.+++|++.++..+   ..|...+..+                           +|||||++++.+.
T Consensus       338 -pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~---------------------------~fS~DG~~v~~S~  386 (432)
T d1qksa2         338 -FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQG---------------------------EFNKDGTEVWFSV  386 (432)
T ss_dssp             -EEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEE---------------------------EECTTSSEEEEEE
T ss_pred             -EechhhcccccCCceEeccccccccc---CCCCCcEEEe---------------------------EECCCCCEEEEEE
Confidence             89999999999999999987655333   3466677777                           8999999885553


Q ss_pred             -----CCCceEEC
Q 012799          449 -----KDSTLKVT  456 (456)
Q Consensus       449 -----~Dg~v~iW  456 (456)
                           .||.|+||
T Consensus       387 ~~~~~~~g~i~i~  399 (432)
T d1qksa2         387 WNGKDQESALVVV  399 (432)
T ss_dssp             ECCTTSCCEEEEE
T ss_pred             ecCCCCCCcEEEE
Confidence                 46888887

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=1.2e-24  Score=194.60  Aligned_cols=296  Identities=10%  Similarity=0.026  Sum_probs=207.0

Q ss_pred             EEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCcccccc-
Q 012799          114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLS-  190 (456)
Q Consensus       114 ~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~-  190 (456)
                      ++|++++++|++++.|++|.+||+.+++.+.++. .+...+.+++|+|||++++ ++..++.|.+||+.+++....... 
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            5789999999999999999999999999998886 4667789999999999875 555789999999999876542221 


Q ss_pred             ----CcccceEEEEecccccCCCCCEEEEEe------------CCCcEEEEECCCCeEEEEecC--cCccEEEEEeCCCC
Q 012799          191 ----GHKKWITGISWEPVHLNAPCRRFVSAS------------KDGDARIWDVSLRKCVICLSG--HTLAVTCVKWGGDG  252 (456)
Q Consensus       191 ----~~~~~v~~~~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~  252 (456)
                          .+...+..++|+|     +|+++++++            .++.+.+||..+++....+..  ....+..+.+++++
T Consensus        82 ~~~~~~~~~~~~v~~s~-----DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISP-----DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  156 (346)
T ss_dssp             CSTTEEEECSSCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             ccccccCCceEEEEEec-----CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC
Confidence                1223456778888     999888765            467889999887654433322  22345566677777


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (456)
                      .+++.+  +.+.+|++.+++.+..+..+. ....+.++|+.................          ............+
T Consensus       157 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~  223 (346)
T d1jmxb_         157 SLYVAG--PDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSML----------YTIARFKDDKQDP  223 (346)
T ss_dssp             CEEEES--SSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEE----------EEEEEC-------
T ss_pred             EEEEeC--CcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEee----------eeeeeeccCceeE
Confidence            555543  568999999999888876433 234444555433211111110000000          0000001112234


Q ss_pred             EEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeee
Q 012799          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL  412 (456)
Q Consensus       333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~  412 (456)
                      .++..+..+.+||.............|...+..+.+++++.+++.+. ++.|.+||..+++.+..+. +...+.++    
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~v----  297 (346)
T d1jmxb_         224 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCV----  297 (346)
T ss_dssp             CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEE----
T ss_pred             eeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEE----
Confidence            55566778999998777666666677888899999999988887766 4679999999999988876 44567788    


Q ss_pred             eeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                             +|+|||++|++++.||.|+||
T Consensus       298 -----------------------a~s~DG~~l~v~~~d~~v~v~  318 (346)
T d1jmxb_         298 -----------------------AFDKKGDKLYLGGTFNDLAVF  318 (346)
T ss_dssp             -----------------------EECSSSSCEEEESBSSEEEEE
T ss_pred             -----------------------EEcCCCCEEEEEeCCCcEEEE
Confidence                                   899999999999999999998

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=2.4e-23  Score=185.21  Aligned_cols=285  Identities=10%  Similarity=0.050  Sum_probs=200.6

Q ss_pred             CeEEEEECCCcEEEEeCCCCcceeEEec--CCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCcccccc----Ccc
Q 012799          121 RQLASGSGDTTVRLWDLNTQTPMFKCTG--HKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLS----GHK  193 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~----~~~  193 (456)
                      +++++++.|++|+|||+.+++.+.++..  +...+.+++|+|||++++ +++.++.|.+||+.+++.+.....    .+.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            5899999999999999999999888864  345678999999999875 567899999999999887652211    122


Q ss_pred             cceEEEEecccccCCCCCEEEEEe------------CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCC
Q 012799          194 KWITGISWEPVHLNAPCRRFVSAS------------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD  260 (456)
Q Consensus       194 ~~v~~~~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d  260 (456)
                      ..+..++|+|     ++++++++.            .++.+.+||..+++....+.. ...+.+++++++| .+++++. 
T Consensus        82 ~~~~~v~~s~-----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~-  154 (337)
T d1pbyb_          82 KSLFGAALSP-----DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR-  154 (337)
T ss_dssp             ECTTCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS-
T ss_pred             cceeeEEEcC-----CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC-
Confidence            3445678887     888888775            467899999999998888764 4557889999999 7777654 


Q ss_pred             CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (456)
Q Consensus       261 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  340 (456)
                       .+.+||..+++....+..+... ....+.++...............            ...............+..++.
T Consensus       155 -~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~  220 (337)
T d1pbyb_         155 -DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMA------------TPFYTARKDIDPADPTAYRTG  220 (337)
T ss_dssp             -SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEE------------EEEEEEBTTSCTTSGGGEEEE
T ss_pred             -CcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceee------------eeeeeeeeccceeeecccCcc
Confidence             4788999999888777543221 11112222110000000000000            000000000111122334557


Q ss_pred             EEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCC
Q 012799          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS  420 (456)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~  420 (456)
                      +.+||.............+...+..+.++|++.+++.+  ++.+++||+.+++.+..+. +...+.++            
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~------------  285 (337)
T d1pbyb_         221 LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSV------------  285 (337)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEE------------
T ss_pred             EEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEE------------
Confidence            88999877665555566777888999999999998776  5889999999999998886 55667788            


Q ss_pred             CceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       421 ~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                                     +|+|||++|++++.||+|+||
T Consensus       286 ---------------~~s~dG~~l~v~~~~~~i~v~  306 (337)
T d1pbyb_         286 ---------------NVSTDGSTVWLGGALGDLAAY  306 (337)
T ss_dssp             ---------------EECTTSCEEEEESBSSEEEEE
T ss_pred             ---------------EECCCCCEEEEEeCCCcEEEE
Confidence                           899999999999999999998

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=1.1e-20  Score=165.02  Aligned_cols=243  Identities=17%  Similarity=0.215  Sum_probs=184.8

Q ss_pred             ccEEEEEECCCCCeEE-EEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCCcc
Q 012799          109 EAVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~  186 (456)
                      ..+..++|+|||++|+ +++.++.|++||+.+++.+..+..+. .+..++|++++..+++ +..++.+.+|+..+++...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeee
Confidence            4578999999999875 56678999999999999998888665 4689999999986665 5567789999999887654


Q ss_pred             ccccCcccceEEEEecccccCCCCCEEE-EEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC-CCcE
Q 012799          187 NPLSGHKKWITGISWEPVHLNAPCRRFV-SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ-DCTI  263 (456)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-dg~i  263 (456)
                        ...+......+.|+|     ++..++ ++..++.+.+|+..+.+....+..+ ..+..+.+++++ .++++.. ++.+
T Consensus       111 --~~~~~~~~~~~~~~~-----dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  182 (301)
T d1l0qa2         111 --TVKTGKSPLGLALSP-----DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSI  182 (301)
T ss_dssp             --EEECSSSEEEEEECT-----TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             --eccccccceEEEeec-----CCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeeccccccc
Confidence              223445678889988     777765 4556788999999999988887644 457889999988 5665555 4678


Q ss_pred             EEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE---eCCCc
Q 012799          264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG---SDDFT  340 (456)
Q Consensus       264 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~  340 (456)
                      .+|+....+....+..+ .....++++++                                    +..++.+   ..++.
T Consensus       183 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------------------------------------g~~~~v~~~~~~~~~  225 (301)
T d1l0qa2         183 SVIDTVTNSVIDTVKVE-AAPSGIAVNPE------------------------------------GTKAYVTNVDKYFNT  225 (301)
T ss_dssp             EEEETTTTEEEEEEECS-SEEEEEEECTT------------------------------------SSEEEEEEECSSCCE
T ss_pred             ccccccceeeeeccccc-CCcceeecccc------------------------------------ccccccccccceeee
Confidence            88888887777766643 44667788877                                    3334443   33468


Q ss_pred             EEEEecCCCCCCccccccccccEeEEEECCCCCEE-EEEECCCcEEEEeCCCCeEEEEEe
Q 012799          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~  399 (456)
                      |++||+.+.+. ...+. +...+.+++|+|||++| ++++.|+.|++||+.+++++.++.
T Consensus       226 v~v~D~~t~~~-~~~~~-~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         226 VSMIDTGTNKI-TARIP-VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEEEETTTTEE-EEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eeeeecCCCeE-EEEEc-CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            99999766543 22232 33568999999999986 577789999999999999988876

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=1.2e-22  Score=186.89  Aligned_cols=266  Identities=12%  Similarity=-0.025  Sum_probs=176.4

Q ss_pred             eEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc----cccCcccceE
Q 012799          122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN----PLSGHKKWIT  197 (456)
Q Consensus       122 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~v~  197 (456)
                      ++++.+.||+|+|||+.+++.+.++..|. .+..++|+|||++|++++.|++|++||+.+++....    ...+|...+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            56778889999999999999999998774 589999999999999999999999999998875321    2235566666


Q ss_pred             EEEecccccCCCCCEEEE-EeCCCcEEEEECCCCeEEEEecCcCccEE-----------EEEeCCCC-eE-EEEeCCCcE
Q 012799          198 GISWEPVHLNAPCRRFVS-ASKDGDARIWDVSLRKCVICLSGHTLAVT-----------CVKWGGDG-VI-YTGSQDCTI  263 (456)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-----------~~~~~~~~-~l-~~~~~dg~i  263 (456)
                      +++|+|     +|+++++ +..++.+++||..++.+...+..+...+.           .+..++++ .+ ++....+.+
T Consensus       113 s~~~sp-----DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i  187 (426)
T d1hzua2         113 SKFKGY-----EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  187 (426)
T ss_dssp             CCSTTC-----TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             eeeecC-----CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            777777     8998755 45789999999999998887766554443           34444444 22 222223444


Q ss_pred             EEEECCCCeE-EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE-EeCCCcE
Q 012799          264 KVWETTQGKL-IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-GSDDFTM  341 (456)
Q Consensus       264 ~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i  341 (456)
                      .+++...... ......+...+..+.++|+                                    ++++++ ...+..+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------g~~~~~a~~~~~~~  231 (426)
T d1hzua2         188 LLVNYKDIDNLTVTSIGAAPFLADGGWDSS------------------------------------HRYFMTAANNSNKV  231 (426)
T ss_dssp             EEEECSSSSSCEEEEEECCSSEEEEEECTT------------------------------------SCEEEEEETTCSEE
T ss_pred             EEEEeccccceeeEEeccCCccEeeeECCC------------------------------------CcEEEeeeecccce
Confidence            4444443322 1122335566777888877                                    344444 4556678


Q ss_pred             EEEecCCCCCCcccc-ccccccEeEEEECCCCC--E-EEEEECCCcEEEEeCCC-------CeEEEEEecccccEEEEEe
Q 012799          342 FLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQ--W-VASASFDKSIKLWNGTT-------GKFVAVFRGHVGPVYQIRF  410 (456)
Q Consensus       342 ~iwd~~~~~~~~~~~-~~~~~~v~~~~~sp~~~--~-l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~  410 (456)
                      .+++........... ..+........+.+.+.  . .++.+.|+.+.+|+...       ++....+.+|...+..+  
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v--  309 (426)
T d1hzua2         232 AVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI--  309 (426)
T ss_dssp             EEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCE--
T ss_pred             eeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEE--
Confidence            888866543221111 11111111222222211  1 12233456666666443       57788899999999888  


Q ss_pred             eeeeeecCCCCceeeecccccccceeEecCCCeEE-------EeeCCCceEEC
Q 012799          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL-------SGSKDSTLKVT  456 (456)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-------s~s~Dg~v~iW  456 (456)
                                               +|+|||++|+       +++.|++|+||
T Consensus       310 -------------------------~~sPdg~~l~v~~~~~~s~~~~~tv~vw  337 (426)
T d1hzua2         310 -------------------------KTHPKSSHLYVDTTFNPDARISQSVAVF  337 (426)
T ss_dssp             -------------------------ECCTTCSEEEECCTTCSSHHHHTCEEEE
T ss_pred             -------------------------EcCCCCceEEEeecCCCCcccCCEEEEE
Confidence                                     8899999999       56778999998

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=6.8e-21  Score=174.75  Aligned_cols=291  Identities=13%  Similarity=-0.007  Sum_probs=190.3

Q ss_pred             CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc----cccCccc
Q 012799          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN----PLSGHKK  194 (456)
Q Consensus       119 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~  194 (456)
                      +.-++++.+.||+|.|||..+++.+..+..+. .+..++|+|||+++++++.||.+++||+.+++....    ....|..
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            33345888899999999999999999998774 699999999999999999999999999998764321    1234455


Q ss_pred             ceEEEEecccccCCCCCEE-EEEeCCCcEEEEECCCCeEEEEecCc-----------CccEEEEEeCCCC--eEEEEeCC
Q 012799          195 WITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGH-----------TLAVTCVKWGGDG--VIYTGSQD  260 (456)
Q Consensus       195 ~v~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~--~l~~~~~d  260 (456)
                      .+.+..|+|     ||+++ ++++.++.|++||..+++++..+..+           ......+.+++++  .+++...+
T Consensus       110 ~~~s~~~Sp-----DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~  184 (432)
T d1qksa2         110 IETSKMEGW-----EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  184 (432)
T ss_dssp             EEECCSTTC-----TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             eEEecccCC-----CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence            555556666     99976 67888999999999999988776543           3456678899988  45666778


Q ss_pred             CcEEEEECCCCeEEEEee-cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe-CC
Q 012799          261 CTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DD  338 (456)
Q Consensus       261 g~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d  338 (456)
                      +.|.+||..+++...... .+......++++|+                                    +.++++++ .+
T Consensus       185 ~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spd------------------------------------g~~~~va~~~~  228 (432)
T d1qksa2         185 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGS------------------------------------HRYFITAANAR  228 (432)
T ss_dssp             TEEEEEETTCSSEEEEEEEECCSSEEEEEECTT------------------------------------SCEEEEEEGGG
T ss_pred             CeEEEEEccCCCcceEEEEcccCccccceECCC------------------------------------CCEEEEecccc
Confidence            999999998877554332 24566788999998                                    44455554 55


Q ss_pred             CcEEEEecCCCCCCccc----cccccccEeEEEECCCCCEEEEEE-CCCcEEEEeCCCCeEEEEEecccccEEEEEeeee
Q 012799          339 FTMFLWEPAVSKQPKTR----MTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI  413 (456)
Q Consensus       339 g~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  413 (456)
                      +.+.++|..........    ...|........+...+...++.. .++.+.+|+......    ..|...+....+.+.
T Consensus       229 ~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~----~~~~~~v~~~~~~~~  304 (432)
T d1qksa2         229 NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH----PDNAWKILDSFPALG  304 (432)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----TTTBTSEEEEEECSC
T ss_pred             ceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccc----cccccEEEEEEEcCC
Confidence            67888886554322111    112333444555555555555443 477899998655321    122222222222110


Q ss_pred             --ee--ecCCCCceeeecc----cc-cccceeEecCCCeEEEeeCCCceEEC
Q 012799          414 --YC--FRYPSNFYCVVDM----SC-CMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       414 --~~--~~~~~~~~~~~~~----~~-~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                        ..  ...+.....-.+.    .. ....++ .||++.|++++.|+.+++|
T Consensus       305 g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~-vpDg~~la~~s~d~~~k~w  355 (432)
T d1qksa2         305 GGSLFIKTHPNSQYLYVDATLNPEAEISGSVA-VFDIKAMTGDGSDPEFKTL  355 (432)
T ss_dssp             SCCCCEECCTTCSEEEEECTTCSSHHHHTCEE-EEEGGGCCCSSSCCCEEEE
T ss_pred             CCeEEEEecCCccceeecccCCCCCCeeeEEE-EEechhhcccccCCceEec
Confidence              00  0001111100000    00 112234 4999999999999999998

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.86  E-value=6.3e-19  Score=158.90  Aligned_cols=276  Identities=12%  Similarity=0.011  Sum_probs=190.9

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEE-----CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe---------
Q 012799          104 IAGHTEAVLSVAFSPDGRQLASGS-----GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS---------  169 (456)
Q Consensus       104 l~~h~~~V~~~~~s~~~~~l~~~~-----~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---------  169 (456)
                      ...|.+++.+++++|||+.++...     .++.|.+||..+++.+.++..+..+  .++|+|||++|++++         
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence            346889999999999999887642     3457999999999999988766544  799999999999875         


Q ss_pred             -CCCeEEEEeCCCCCCccccccCcccce-------EEEEecccccCCCCCEEEEE--eCCCcEEEEECCCCeEEEEecCc
Q 012799          170 -KAGELQCWDPQTGKPSGNPLSGHKKWI-------TGISWEPVHLNAPCRRFVSA--SKDGDARIWDVSLRKCVICLSGH  239 (456)
Q Consensus       170 -~dg~i~vwd~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~  239 (456)
                       .++.|.+||..+++.... ...+....       ..+.|++     +++.++..  ..++.+.+|+....+.....   
T Consensus        94 ~~~~~v~v~D~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~s~-----dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---  164 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIAD-IELPDAPRFDVGPYSWMNANTP-----NNADLLFFQFAAGPAVGLVVQGGSSDDQLL---  164 (373)
T ss_pred             ccceEEEEEECCCCcEEEE-EecCCcceeEeccCCCcEEEEe-----CCCcEEEEEEcCCCceEEeeccCCeEEEEe---
Confidence             457899999999887653 22233222       3355655     66766554  34567888988877655443   


Q ss_pred             CccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCc------ceEEEEecCcceeeeccccCCCCccCChH
Q 012799          240 TLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGH------WVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (456)
Q Consensus       240 ~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (456)
                       ....++.+++++  .+++.+.|+.+.+||...++.......+..      ....+.+.+                    
T Consensus       165 -~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  223 (373)
T d2madh_         165 -SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK--------------------  223 (373)
T ss_pred             -ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC--------------------
Confidence             345678888888  667889999999999998877665543211      112222222                    


Q ss_pred             HHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCc-ccccc----------ccccEeEEEECCCCCEE-----
Q 012799          312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK-TRMTG----------HQQLVNHVYFSPDGQWV-----  375 (456)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~----------~~~~v~~~~~sp~~~~l-----  375 (456)
                                       ...++..+.++.+.+|+........ .....          .......+++++++..+     
T Consensus       224 -----------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  286 (373)
T d2madh_         224 -----------------SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTS  286 (373)
T ss_pred             -----------------CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecC
Confidence                             2235566677888888755432110 00111          11223445666665544     


Q ss_pred             -----EEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC--eEEEee
Q 012799          376 -----ASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR--LLLSGS  448 (456)
Q Consensus       376 -----~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~s~s  448 (456)
                           ++...++.+.+||..+++.+..+. +...+..+                           +|+|||+  ++++++
T Consensus       287 ~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~---------------------------a~spDG~~~l~vt~~  338 (373)
T d2madh_         287 EQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAI---------------------------SVAQDGGPDLYALSA  338 (373)
T ss_pred             CCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEE---------------------------EECCCCCEEEEEEeC
Confidence                 445566789999999999988776 55667788                           8999998  457889


Q ss_pred             CCCceEEC
Q 012799          449 KDSTLKVT  456 (456)
Q Consensus       449 ~Dg~v~iW  456 (456)
                      .|++|+||
T Consensus       339 ~d~~v~v~  346 (373)
T d2madh_         339 GTEVLHIY  346 (373)
T ss_pred             CCCeEEEE
Confidence            99999998

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=7.8e-20  Score=162.22  Aligned_cols=254  Identities=13%  Similarity=0.044  Sum_probs=180.7

Q ss_pred             cccccc--CCcccEEEEEECCCCCeEE-EEECCCcEEEEeCCCCcceeEEecCCC-----CEEEEEEcCCCCEEEEEe--
Q 012799          100 CSATIA--GHTEAVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKN-----WVLCIAWSADGKHLVSGS--  169 (456)
Q Consensus       100 ~~~~l~--~h~~~V~~~~~s~~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~--  169 (456)
                      +++++.  .+...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+..     .+..++|+|++++++++.  
T Consensus        23 ~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~  102 (337)
T d1pbyb_          23 VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESP  102 (337)
T ss_dssp             EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEE
T ss_pred             EEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecC
Confidence            344443  3455678999999999874 566889999999999999888775543     345789999999998876  


Q ss_pred             ----------CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc
Q 012799          170 ----------KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH  239 (456)
Q Consensus       170 ----------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  239 (456)
                                .++.+.+||..+++....  ..+...+..++|+|     +++++++++.  .+.+||..+++....+..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~-----dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~  173 (337)
T d1pbyb_         103 VRLELTHFEVQPTRVALYDAETLSRRKA--FEAPRQITMLAWAR-----DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQ  173 (337)
T ss_dssp             EEECSSCEEECCCEEEEEETTTTEEEEE--EECCSSCCCEEECT-----TSSCEEEESS--SEEEEETTTTEEEEEECST
T ss_pred             CcceeeeccccccceeeccccCCeEEEe--ccccCCceEEEEcC-----CCCEEEEEcC--CcceeeeecCcEEEEeecC
Confidence                      356789999988876542  22345677889988     9999998865  4788999999888776533


Q ss_pred             CccEEEEEeCCCC-------------------------eEEEEeCCCcEEEEECCCCeEEEE-eecCCcceEEEEecCcc
Q 012799          240 TLAVTCVKWGGDG-------------------------VIYTGSQDCTIKVWETTQGKLIRE-LKGHGHWVNSLALSTEY  293 (456)
Q Consensus       240 ~~~v~~~~~~~~~-------------------------~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~  293 (456)
                      ... ....+.+++                         ....+..++.+.+||..++..... +..+......+.++++ 
T Consensus       174 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  251 (337)
T d1pbyb_         174 SWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA-  251 (337)
T ss_dssp             TTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTT-
T ss_pred             Ccc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEeccc-
Confidence            211 001111111                         111223345688899888775543 4445666677777776 


Q ss_pred             eeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCC
Q 012799          294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ  373 (456)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~  373 (456)
                                                         +.+++.+  ++.+++||+.+.......  .+...+.+++|+|||+
T Consensus       252 -----------------------------------~~~~~~~--~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~s~dG~  292 (337)
T d1pbyb_         252 -----------------------------------KTRAFGA--YNVLESFDLEKNASIKRV--PLPHSYYSVNVSTDGS  292 (337)
T ss_dssp             -----------------------------------SSEEEEE--ESEEEEEETTTTEEEEEE--ECSSCCCEEEECTTSC
T ss_pred             -----------------------------------ceEEEEc--cccEEEEECCCCcEEEEE--cCCCCEEEEEECCCCC
Confidence                                               3345444  589999998766543332  3456689999999999


Q ss_pred             EEEEEECCCcEEEEeCCCCeEEEEEecccc
Q 012799          374 WVASASFDKSIKLWNGTTGKFVAVFRGHVG  403 (456)
Q Consensus       374 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  403 (456)
                      +|++++.||.|++||..+++.+.+++....
T Consensus       293 ~l~v~~~~~~i~v~D~~t~~~v~~i~~~g~  322 (337)
T d1pbyb_         293 TVWLGGALGDLAAYDAETLEKKGQVDLPGN  322 (337)
T ss_dssp             EEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred             EEEEEeCCCcEEEEECCCCcEEEEEECCCC
Confidence            999999999999999999999988875433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5e-19  Score=156.81  Aligned_cols=268  Identities=11%  Similarity=0.084  Sum_probs=178.3

Q ss_pred             eEEEEECCCcEEEEeCCCCcceeEE--ecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCcccc--ccCcccce
Q 012799          122 QLASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGNP--LSGHKKWI  196 (456)
Q Consensus       122 ~l~~~~~d~~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~--~~~~~~~v  196 (456)
                      .+++++.|++|++|++++...+..+  ..|.+.+..|+|+|||++|++++ .|+.|++|++.........  ...+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            3567779999999999765444333  36889999999999999996655 4899999999876543211  12234456


Q ss_pred             EEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEEE--ecCcCccEEEEEeCCCC-eEEEEe-CCCcEEEEECCCC
Q 012799          197 TGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDG-VIYTGS-QDCTIKVWETTQG  271 (456)
Q Consensus       197 ~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~  271 (456)
                      ..++|+|     +|+++++++. ++.+.+|+.........  ...+...+.++.++|++ .+++++ .+..+.+|+....
T Consensus        86 ~~l~~sp-----Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          86 THISTDH-----QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             SEEEECT-----TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             eEEEEcC-----CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence            7899999     9999998875 67899998876654433  34566678889999999 555555 4567999998765


Q ss_pred             eEEEEe------ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEe
Q 012799          272 KLIREL------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (456)
Q Consensus       272 ~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  345 (456)
                      ......      .........++++++...                                   .+.+....+...+|+
T Consensus       161 ~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~-----------------------------------~~~~~~~~~~~~v~~  205 (333)
T d1ri6a_         161 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQY-----------------------------------AYCVNELNSSVDVWE  205 (333)
T ss_dssp             SCEEEEEEEEEECSTTCCEEEEEECTTSSE-----------------------------------EEEEETTTTEEEEEE
T ss_pred             CcceeeeceeeeeecCCCccEEEEecccee-----------------------------------EEeeccccCceEEEe
Confidence            432211      123344567777776322                                   234445566777777


Q ss_pred             cCCCCCCccc---------cccccccEeEEEECCCCCEEEE-EECCCcEEEEeCCCCeEEEEEec---ccccEEEEEeee
Q 012799          346 PAVSKQPKTR---------MTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQIRFEL  412 (456)
Q Consensus       346 ~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~i~~~~  412 (456)
                      ..........         ..........+++++++++++. +..++.+.+|++...........   ....+.++    
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----  281 (333)
T d1ri6a_         206 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGF----  281 (333)
T ss_dssp             SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCE----
T ss_pred             ecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEE----
Confidence            5443322111         1122345677899999997655 45678899998876543332222   22334455    


Q ss_pred             eeeecCCCCceeeecccccccceeEecCCCeEEEee-CCCceEEC
Q 012799          413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVT  456 (456)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s-~Dg~v~iW  456 (456)
                                             +|+|||++|++++ .++.|+||
T Consensus       282 -----------------------a~spDGk~l~va~~~~~~v~v~  303 (333)
T d1ri6a_         282 -----------------------NVDHSGKYLIAAGQKSHHISVY  303 (333)
T ss_dssp             -----------------------EECTTSSEEEEECTTTCEEEEE
T ss_pred             -----------------------EEeCCCCEEEEEECCCCeEEEE
Confidence                                   8999999877765 56889886

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=1e-17  Score=150.79  Aligned_cols=280  Identities=10%  Similarity=-0.043  Sum_probs=189.1

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEE----------CCCcEEEEeCCCCcceeEEecCCCCE-------EEEEEcC
Q 012799           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGHKNWV-------LCIAWSA  160 (456)
Q Consensus        98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~----------~d~~v~vwd~~~~~~~~~~~~~~~~v-------~~~~~~~  160 (456)
                      ++...++.++..+  .++|+|||++|++++          .++.|.+||..+++.+..+..+....       ..+.|++
T Consensus        57 g~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~  134 (373)
T d2madh_          57 GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP  134 (373)
T ss_pred             CCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEe
Confidence            3445556666554  699999999999875          35789999999999888876655443       4578888


Q ss_pred             CCCEEEEEe--CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCC-EEEEEeCCCcEEEEECCCCeEEEEec
Q 012799          161 DGKHLVSGS--KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICLS  237 (456)
Q Consensus       161 ~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  237 (456)
                      +++.++...  .++.+.+|+....+..     .+.....++.++|     +++ .+++.+.|+.+.+|+...++......
T Consensus       135 dg~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~-----~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~  204 (373)
T d2madh_         135 NNADLLFFQFAAGPAVGLVVQGGSSDD-----QLLSSPTCYHIHP-----GAPSTFYLLCAQGGLAKTDHAGGAAGAGLV  204 (373)
T ss_pred             CCCcEEEEEEcCCCceEEeeccCCeEE-----EEeccceeEEEec-----CCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence            888766554  4567889988776543     2334456777887     554 45788899999999998887766543


Q ss_pred             Cc------CccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEE--eecCCcceEEEEecCcceeee-ccccCCCCccC
Q 012799          238 GH------TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRE--LKGHGHWVNSLALSTEYALRT-GAFDHTGKQYS  308 (456)
Q Consensus       238 ~~------~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~  308 (456)
                      .+      ......+.+.+++.++..+.++.+.+|+...+.....  ............+.|...... ...+...    
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----  280 (373)
T d2madh_         205 GAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG----  280 (373)
T ss_pred             eeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCe----
Confidence            22      2234456667777777888899999999988754332  222222233333333211100 0000000    


Q ss_pred             ChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCE--EEEEECCCcEEE
Q 012799          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW--VASASFDKSIKL  386 (456)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~s~~~dg~i~i  386 (456)
                                   .......+..++....++.+.+||..+.+.... + .+...+..++|+|||+.  +++++.|+.|++
T Consensus       281 -------------~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~-~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v  345 (373)
T d2madh_         281 -------------IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ-I-SLGHDVDAISVAQDGGPDLYALSAGTEVLHI  345 (373)
T ss_pred             -------------EEEecCCCceEEeecCCCeEEEEECCCCcEEEE-e-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEE
Confidence                         001122355577888889999999776654332 2 35567899999999984  568899999999


Q ss_pred             EeCCCCeEEEEEecccccEEEE
Q 012799          387 WNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       387 wd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      ||+.+++.+..+..+....+.+
T Consensus       346 ~D~~tg~~~~~~~~~g~~P~~l  367 (373)
T d2madh_         346 YDAGAGDQDQSTVELGSGPQVL  367 (373)
T ss_pred             EECCCCCEEEEECCCCCCCcEE
Confidence            9999999999998777666666

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=2.9e-18  Score=153.33  Aligned_cols=272  Identities=13%  Similarity=0.037  Sum_probs=177.9

Q ss_pred             EEEEECCCCCeEEEEE-----CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE----------eCCCeEEE
Q 012799          112 LSVAFSPDGRQLASGS-----GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG----------SKAGELQC  176 (456)
Q Consensus       112 ~~~~~s~~~~~l~~~~-----~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~----------~~dg~i~v  176 (456)
                      .-.+.+||++.++...     .++.|.+||..+++.+.++..+..+  .++|+|||++|++.          +.|+.|++
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence            3346689999887654     3557999999999999888766544  79999999988764          34789999


Q ss_pred             EeCCCCCCcccccc------CcccceEEEEecccccCCCCCEEEEEe--CCCcEEEEECCCCeEEEEecCcCccEEEEEe
Q 012799          177 WDPQTGKPSGNPLS------GHKKWITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKW  248 (456)
Q Consensus       177 wd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  248 (456)
                      ||..+++.......      ........+.|+|     +++.++++.  .+..+.+|+..+++.+..+..+.... . ..
T Consensus        83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~  155 (355)
T d2bbkh_          83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-----DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH-I-FP  155 (355)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-----TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE-E-EE
T ss_pred             EECCCCCEEEEEecCCcceeecCCCCceEEEec-----CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce-E-ee
Confidence            99999886542211      1112234567887     888887764  46789999999999888776443221 1 11


Q ss_pred             CCCCeEEEEeCCCcEEEEECCCCeEEEEee------cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhh
Q 012799          249 GGDGVIYTGSQDCTIKVWETTQGKLIRELK------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (456)
Q Consensus       249 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (456)
                      ......++.+.||....+..........+.      .+...+....+.++                              
T Consensus       156 ~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------  205 (355)
T d2bbkh_         156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK------------------------------  205 (355)
T ss_dssp             EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT------------------------------
T ss_pred             cCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCC------------------------------
Confidence            112244445556555555443332211111      11112222223222                              


Q ss_pred             hccCCCCCEEEEEeCCCcEEEEecCCCCCCccc-ccc----------ccccEeEEEECCCCCEEEEEECC----------
Q 012799          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-MTG----------HQQLVNHVYFSPDGQWVASASFD----------  381 (456)
Q Consensus       323 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~----------~~~~v~~~~~sp~~~~l~s~~~d----------  381 (456)
                            +..++.++.++.+++|++......... ...          .......+++++++..++....+          
T Consensus       206 ------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  279 (355)
T d2bbkh_         206 ------AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  279 (355)
T ss_dssp             ------TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             ------CCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCC
Confidence                  556888899999999997765432111 111          11223458899999987776543          


Q ss_pred             CcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC--eEEEeeCCCceEEC
Q 012799          382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR--LLLSGSKDSTLKVT  456 (456)
Q Consensus       382 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~s~s~Dg~v~iW  456 (456)
                      +.|.+||..+++.+..+.. ...+.++                           +|+|||+  ++++++.|+.|+||
T Consensus       280 ~~v~v~d~~t~~~~~~~~~-~~~~~~~---------------------------a~spDG~~~l~v~~~~d~~i~v~  328 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFEM-GHEIDSI---------------------------NVSQDEKPLLYALSTGDKTLYIH  328 (355)
T ss_dssp             EEEEEEETTTCCEEEEEEE-EEEECEE---------------------------EECCSSSCEEEEEETTTTEEEEE
T ss_pred             CeEEEEeCCCCcEEEEecC-CCCEEEE---------------------------EEcCCCCeEEEEEECCCCEEEEE
Confidence            3699999999999888763 3456777                           8999998  45677789999998

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=2.2e-18  Score=153.30  Aligned_cols=258  Identities=14%  Similarity=0.026  Sum_probs=173.8

Q ss_pred             ccccccc-CCcccEEEEEECCCCCeEE-EEECCCcEEEEeCCCCcceeEEecCC------CCEEEEEEcCCCCEEEEEe-
Q 012799           99 RCSATIA-GHTEAVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHK------NWVLCIAWSADGKHLVSGS-  169 (456)
Q Consensus        99 ~~~~~l~-~h~~~V~~~~~s~~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~-  169 (456)
                      +.+++++ .|...+.+++|+|||++++ +++.++.|++||+.+++.+..+....      ..+..++|+|||+++++++ 
T Consensus        29 ~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence            3455554 4566788999999999875 55578999999999998887765322      2456799999999998765 


Q ss_pred             -----------CCCeEEEEeCCCCCCccccccC-cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 012799          170 -----------KAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS  237 (456)
Q Consensus       170 -----------~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  237 (456)
                                 .++.+.+|+..+++........ ....+..+.+.+     ++..+++ +  +.+.+|++.+++.+..+.
T Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~--~~~~~~~~~~~~~~~~~~  180 (346)
T d1jmxb_         109 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-----DGSLYVA-G--PDIYKMDVKTGKYTVALP  180 (346)
T ss_dssp             EEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-----TSCEEEE-S--SSEEEECTTTCCEEEEEC
T ss_pred             CCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC-----CCEEEEe-C--CcceEEEccCCCEEEEEe
Confidence                       4677899998877654322111 122344444444     5554443 2  468999999988887765


Q ss_pred             CcCccEEEEEeCCCC---------------------------eEEEEeCCCcEEEEECCCCeEEEE-eecCCcceEEEEe
Q 012799          238 GHTLAVTCVKWGGDG---------------------------VIYTGSQDCTIKVWETTQGKLIRE-LKGHGHWVNSLAL  289 (456)
Q Consensus       238 ~~~~~v~~~~~~~~~---------------------------~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~  289 (456)
                      .+.. ...+.++|++                           .+.++..++.+.+||+.++..... ...+...+..+.+
T Consensus       181 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (346)
T d1jmxb_         181 LRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR  259 (346)
T ss_dssp             STTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEE
Confidence            4322 1222233322                           223344455677888887765443 3446666777777


Q ss_pred             cCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEEC
Q 012799          290 STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS  369 (456)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s  369 (456)
                      +++                                    +.+++... ++.+.+||..+.+.....  .+...+.+++|+
T Consensus       260 ~~~------------------------------------~~~~~~~~-~~~v~v~d~~~~~~~~~~--~~~~~~~~va~s  300 (346)
T d1jmxb_         260 SPK------------------------------------DPNQIYGV-LNRLAKYDLKQRKLIKAA--NLDHTYYCVAFD  300 (346)
T ss_dssp             CSS------------------------------------CTTEEEEE-ESEEEEEETTTTEEEEEE--ECSSCCCEEEEC
T ss_pred             eCC------------------------------------CCEEEEec-CCeEEEEECCCCcEEEEE--cCCCCEEEEEEc
Confidence            766                                    33355444 457999997765433322  234568999999


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCeEEEEEeccccc
Q 012799          370 PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP  404 (456)
Q Consensus       370 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  404 (456)
                      |||++|++++.||.|++||..+++.+..++.+.+.
T Consensus       301 ~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         301 KKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             SSSSCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred             CCCCEEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence            99999999999999999999999999998865543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.2e-16  Score=141.18  Aligned_cols=250  Identities=12%  Similarity=0.184  Sum_probs=167.3

Q ss_pred             cCCcccEEEEEECCCCCeEEEEE-CCCcEEEEeCCCCcceeEE---ecCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeC
Q 012799          105 AGHTEAVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMFKC---TGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDP  179 (456)
Q Consensus       105 ~~h~~~V~~~~~s~~~~~l~~~~-~d~~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~  179 (456)
                      ..|.+.|..++|+|||++|++++ .|+.|++|++........+   ..+...+..++|+|||++|++++. ++.+.+|+.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            36889999999999999986655 5899999999876543332   234556788999999999999875 678999988


Q ss_pred             CCCCCccc-cccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEE------EecCcCccEEEEEeCCC
Q 012799          180 QTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVI------CLSGHTLAVTCVKWGGD  251 (456)
Q Consensus       180 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~------~~~~~~~~v~~~~~~~~  251 (456)
                      ........ ....+...+.++.++|     ++++++.++. +..+.+|+........      ...........++|+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~v~~s~-----d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~  187 (333)
T d1ri6a_         113 EDGLPVGVVDVVEGLDGCHSANISP-----DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  187 (333)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECT-----TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             ccccceecccccCCCccceEEEeee-----cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecc
Confidence            76543321 2234555677888888     8888887765 4579999986543221      11234456788999998


Q ss_pred             C-eE-EEEeCCCcEEEEECCCCe----EEEEeec------CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHh
Q 012799          252 G-VI-YTGSQDCTIKVWETTQGK----LIRELKG------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (456)
Q Consensus       252 ~-~l-~~~~~dg~i~iwd~~~~~----~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (456)
                      + .+ .+....+...+|+.....    ....+..      .......+++++++.                         
T Consensus       188 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-------------------------  242 (333)
T d1ri6a_         188 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR-------------------------  242 (333)
T ss_dssp             SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS-------------------------
T ss_pred             ceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccC-------------------------
Confidence            8 44 444556677888765422    1122211      122344556666532                         


Q ss_pred             hhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc--ccccccEeEEEECCCCCEEEEEE-CCCcEEEE--eCCCCeE
Q 012799          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVASAS-FDKSIKLW--NGTTGKF  394 (456)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iw--d~~~~~~  394 (456)
                                ..++.+..++.+.+|++..........  ......+..++|+|||++|++++ .++.|++|  |..+|++
T Consensus       243 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         243 ----------HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             ----------EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             ----------ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence                      235566678899999976655443322  22345578899999999877665 56889998  5567765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=3.8e-17  Score=145.90  Aligned_cols=260  Identities=12%  Similarity=0.065  Sum_probs=160.2

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEE----------CCCcEEEEeCCCCcceeEEecCC-------CCEEEEEEcCCC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGHK-------NWVLCIAWSADG  162 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~----------~d~~v~vwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~  162 (456)
                      .+.++..+..+  .++|||||++|++.+          .|+.|++||..+++.+..+..+.       .....++|+|++
T Consensus        40 ~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  117 (355)
T d2bbkh_          40 VIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG  117 (355)
T ss_dssp             EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred             EEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCC
Confidence            34455545444  699999999887643          47899999999999887765432       234568999999


Q ss_pred             CEEEEEe--CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe----
Q 012799          163 KHLVSGS--KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL----  236 (456)
Q Consensus       163 ~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----  236 (456)
                      ++++.+.  .+..+.+|+..+++...... .+.... .  +..     .....+..+.||...++...........    
T Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~-----~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~  188 (355)
T d2bbkh_         118 KTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPDCYH-I--FPT-----APDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  188 (355)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEE-E--EEE-----ETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             CeeEEecCCCCceeeeeecCCCcEeeEEe-cCCcce-E--eec-----CCcceEEEcCCCCEEEEEecCCCeEEEEeccc
Confidence            9888765  45789999999887654222 111111 1  111     1223444455555555443322211111    


Q ss_pred             --cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEE--EeecCCcc----------eEEEEecCcceeeecccc
Q 012799          237 --SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIR--ELKGHGHW----------VNSLALSTEYALRTGAFD  301 (456)
Q Consensus       237 --~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~----------i~~~~~~~~~~~~~~~~~  301 (456)
                        ..+...+....+.+++ .++.++.++.+++|++..++...  ....+...          ...++++++         
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d---------  259 (355)
T d2bbkh_         189 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA---------  259 (355)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT---------
T ss_pred             ccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCC---------
Confidence              1223334445555555 88888999999999998875432  11212111          122444444         


Q ss_pred             CCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC----------CCcEEEEecCCCCCCccccccccccEeEEEECCC
Q 012799          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD----------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD  371 (456)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~  371 (456)
                                                 +..++....          ...|.+||..+.+. ...+ .+...+.+++|+||
T Consensus       260 ---------------------------~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~-~~~~-~~~~~~~~~a~spD  310 (355)
T d2bbkh_         260 ---------------------------LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-LAKF-EMGHEIDSINVSQD  310 (355)
T ss_dssp             ---------------------------TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEE-EEEEEECEEEECCS
T ss_pred             ---------------------------CCeEEEEeccCCceeecCCCCeEEEEeCCCCcE-EEEe-cCCCCEEEEEEcCC
Confidence                                       333333322          24689999776543 3323 23456899999999


Q ss_pred             CC--EEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          372 GQ--WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       372 ~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      |+  ++++++.|+.|++||+++++.+.++.++...-..+
T Consensus       311 G~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i  349 (355)
T d2bbkh_         311 EKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI  349 (355)
T ss_dssp             SSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEE
T ss_pred             CCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEE
Confidence            98  45677789999999999999999988664433333

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.65  E-value=1.9e-14  Score=133.38  Aligned_cols=117  Identities=15%  Similarity=0.189  Sum_probs=89.8

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEEC---------CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q 012799          102 ATIAGHTEAVLSVAFSPDGRQLASGSG---------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG  172 (456)
Q Consensus       102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~---------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  172 (456)
                      ++|..|...|.++.|||||++||.++.         ++.+.+||+.+++ ...+..+...+..+.|+|||+.||.. .++
T Consensus        55 ~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~  132 (470)
T d2bgra1          55 STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNN  132 (470)
T ss_dssp             TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETT
T ss_pred             hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecc
Confidence            467788899999999999999998753         4678999999876 45677899999999999999999986 567


Q ss_pred             eEEEEeCCCCCCccccccCc-----------------ccceEEEEecccccCCCCCEEEEEeCCCc-EEEE
Q 012799          173 ELQCWDPQTGKPSGNPLSGH-----------------KKWITGISWEPVHLNAPCRRFVSASKDGD-ARIW  225 (456)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~~~l~~~~~dg~-i~iw  225 (456)
                      .+.+|+..+++.......+.                 .+....+.|+|     +|+.++....|.. +..|
T Consensus       133 ~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-----DGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         133 DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-----NGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-----TSSEEEEEEEECTTCCEE
T ss_pred             cceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC-----CCCccceeEecCCcCceE
Confidence            89999999887654222211                 12335577988     9999998876533 4444

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=6.6e-15  Score=131.90  Aligned_cols=286  Identities=8%  Similarity=-0.071  Sum_probs=173.2

Q ss_pred             CCcccEEEEEECCCCCeEEE---EECCC--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe----------C
Q 012799          106 GHTEAVLSVAFSPDGRQLAS---GSGDT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------K  170 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~---~~~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~  170 (456)
                      .+.++...++..++++....   ...++  .+.+||..+++.+..+..+...  .++|+|||+.|++.+          .
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~   94 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKR   94 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCcccccccc
Confidence            45556666677888875322   23334  4777799999988888766654  589999999998764          4


Q ss_pred             CCeEEEEeCCCCCCcccccc------CcccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCeEEEEecCcCccE
Q 012799          171 AGELQCWDPQTGKPSGNPLS------GHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAV  243 (456)
Q Consensus       171 dg~i~vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v  243 (456)
                      |+.|.+||..+++.......      ........++|+|     ||++++++. .++.+.+||+.+++....+..+....
T Consensus        95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-----DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~  169 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-----SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH  169 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-----TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC
T ss_pred             CCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-----CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce
Confidence            67899999999886543211      1112234578888     999998876 57999999999999888876544332


Q ss_pred             EEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEe------ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799          244 TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (456)
Q Consensus       244 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (456)
                      .  ...+...+++.+.||.+..+++.........      ..+...+....+.+++.....                   
T Consensus       170 ~--~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------------------  228 (368)
T d1mdah_         170 I--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA-------------------  228 (368)
T ss_dssp             C--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC-------------------
T ss_pred             E--ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe-------------------
Confidence            1  1122336777888999888887654322211      111222223333333211000                   


Q ss_pred             HhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc-ccccccEeEEEECCCCCEEEEEECC---------CcEEEE
Q 012799          318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFD---------KSIKLW  387 (456)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~~~d---------g~i~iw  387 (456)
                               ..+...+.....+.+.+++........... .........++++|++..++....+         ..|.+|
T Consensus       229 ---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~  299 (368)
T d1mdah_         229 ---------VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV  299 (368)
T ss_dssp             ---------BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred             ---------cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEE
Confidence                     001111222222333333322111111100 0111223457889998877655322         359999


Q ss_pred             eCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCe--EEEeeCCCceEEC
Q 012799          388 NGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL--LLSGSKDSTLKVT  456 (456)
Q Consensus       388 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~s~s~Dg~v~iW  456 (456)
                      |..+++.+..+. +...+.++                           +|+|||+.  +++++.|+.|+||
T Consensus       300 D~~t~~~~~~~~-~~~~~~~~---------------------------a~spDG~~~ly~s~~~~~~v~v~  342 (368)
T d1mdah_         300 TASVGQTSGPIS-NGHDSDAI---------------------------IAAQDGASDNYANSAGTEVLDIY  342 (368)
T ss_dssp             ESSSCCEEECCE-EEEEECEE---------------------------EECCSSSCEEEEEETTTTEEEEE
T ss_pred             ECCCCcEeEEec-CCCceeEE---------------------------EECCCCCEEEEEEeCCCCeEEEE
Confidence            999999888776 34566777                           89999973  4677789999998

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=9.9e-15  Score=130.73  Aligned_cols=253  Identities=9%  Similarity=0.002  Sum_probs=159.7

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEE----------CCCcEEEEeCCCCcceeEEecCCC-------CEEEEEEcCCC
Q 012799          100 CSATIAGHTEAVLSVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGHKN-------WVLCIAWSADG  162 (456)
Q Consensus       100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~----------~d~~v~vwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~  162 (456)
                      ...++.++..+  .++|+|||+.|++.+          .|+.|.+||..+++++..+..+..       ....++|+|||
T Consensus        58 ~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDG  135 (368)
T d1mdah_          58 TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS  135 (368)
T ss_dssp             EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS
T ss_pred             EEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCC
Confidence            34445555554  489999999998765          367899999999998887764322       23468999999


Q ss_pred             CEEEEEe-CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-----
Q 012799          163 KHLVSGS-KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-----  236 (456)
Q Consensus       163 ~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----  236 (456)
                      ++|+++. .++.+.+||+.+++..... ..+....    +.|.    ....++..+.||.+.+++..........     
T Consensus       136 k~l~va~~~~~~v~~~d~~~~~~~~~~-~~~~~~~----~~~~----~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~  206 (368)
T d1mdah_         136 ACLLFFLFGSSAAAGLSVPGASDDQLT-KSASCFH----IHPG----AAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             SCEEEEECSSSCEEEEEETTTEEEEEE-ECSSCCC----CEEE----ETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEeEEe-eccCcce----EccC----CCceEEEEcCCCCEEEEEecCCceeeeeeeccc
Confidence            9998876 4789999999988765422 2222111    1110    2346777788888888887654332221     


Q ss_pred             -cCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEee--cCC----------cceEEEEecCcceeeeccccCC
Q 012799          237 -SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK--GHG----------HWVNSLALSTEYALRTGAFDHT  303 (456)
Q Consensus       237 -~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~----------~~i~~~~~~~~~~~~~~~~~~~  303 (456)
                       ..+...+....+.+++..+. ...+.+.+++...+.......  ...          .....++++++           
T Consensus       207 ~~~~~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~-----------  274 (368)
T d1mdah_         207 TGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN-----------  274 (368)
T ss_dssp             CTTSCBCSCCEEETTTTEEEE-CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT-----------
T ss_pred             ccccccceeecccccCcEEEE-ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCC-----------
Confidence             22344455677777774433 334667777776654433221  111          01122334443           


Q ss_pred             CCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC---------CCcEEEEecCCCCCCccccccccccEeEEEECCCCC-
Q 012799          304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-  373 (456)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-  373 (456)
                                               +..++....         ...|.+||..+.+. ...+ .+...+..++|+|||+ 
T Consensus       275 -------------------------~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~-~~~~-~~~~~~~~~a~spDG~~  327 (368)
T d1mdah_         275 -------------------------TDGIMILTVEHSRSCLAAAENTSSVTASVGQT-SGPI-SNGHDSDAIIAAQDGAS  327 (368)
T ss_dssp             -------------------------TTEEEEEEEECSSCTTSCEEEEEEEESSSCCE-EECC-EEEEEECEEEECCSSSC
T ss_pred             -------------------------CCEEEEEecCCCceeecCCceEEEEECCCCcE-eEEe-cCCCceeEEEECCCCCE
Confidence                                     222333221         13588999776643 3323 3446789999999997 


Q ss_pred             E-EEEEECCCcEEEEeCCCCeEEEEEeccc
Q 012799          374 W-VASASFDKSIKLWNGTTGKFVAVFRGHV  402 (456)
Q Consensus       374 ~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~  402 (456)
                      + ++++..|+.|++||..+++.+..++...
T Consensus       328 ~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~  357 (368)
T d1mdah_         328 DNYANSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             EEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             EEEEEeCCCCeEEEEECCCCCEEEEEECCC
Confidence            3 4667788999999999999999887543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.61  E-value=6.9e-15  Score=130.85  Aligned_cols=260  Identities=13%  Similarity=0.052  Sum_probs=163.2

Q ss_pred             EEEEECCCcEEEEeCCCCcceeEEec------------------------------CCCCEEEEEEcCCCCEEEEEe-CC
Q 012799          123 LASGSGDTTVRLWDLNTQTPMFKCTG------------------------------HKNWVLCIAWSADGKHLVSGS-KA  171 (456)
Q Consensus       123 l~~~~~d~~v~vwd~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~s~~-~d  171 (456)
                      +++++.+|.|++|++.+++.+.++.-                              |.-.......+|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56777899999999998887766531                              223344555678999997665 57


Q ss_pred             CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCC--EEEEEeCCC-----------------cEEEEECCCCeE
Q 012799          172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR--RFVSASKDG-----------------DARIWDVSLRKC  232 (456)
Q Consensus       172 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~l~~~~~dg-----------------~i~iwd~~~~~~  232 (456)
                      +.|.++|+++++........+......++|+|     +++  +++..+.+.                 .+..+|..+.+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-----dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v  168 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-----VPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV  168 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECC-----SSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEec-----cCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence            88999999999876544445667789999998     666  444444332                 235578888777


Q ss_pred             EEEecCcCccEEEEEeCCCC-eEEEEeCCC-cE----------------------------------------EEEECCC
Q 012799          233 VICLSGHTLAVTCVKWGGDG-VIYTGSQDC-TI----------------------------------------KVWETTQ  270 (456)
Q Consensus       233 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg-~i----------------------------------------~iwd~~~  270 (456)
                      ...+.. ......+.++|+| ++++++.+. .+                                        .+++...
T Consensus       169 ~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~  247 (441)
T d1qnia2         169 AWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE  247 (441)
T ss_dssp             EEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS
T ss_pred             eEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC
Confidence            666653 3456788999999 666665442 22                                        2222222


Q ss_pred             CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE-EEEeCCCcEEEEecCCC
Q 012799          271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAVS  349 (456)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~  349 (456)
                      .+.+..+..... ...+.++|                                    +++++ +++..++++.+||+.+.
T Consensus       248 ~~v~~~IPvgks-PhGv~vSP------------------------------------DGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         248 SEFTRYIPVPKN-PHGLNTSP------------------------------------DGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             CSSEEEECCBSS-CCCEEECT------------------------------------TSCEEEEECTTSSBEEEEEGGGH
T ss_pred             CceEEEEeCCCC-ccCceECC------------------------------------CCCEEEEeCCcCCcEEEEEeehh
Confidence            222222222111 23344444                                    46655 56788999999997542


Q ss_pred             CCC-------cccccccc---ccEeEEEECCCCCEEEEEECCCcEEEEeCCC----------CeEEEEEe-----ccccc
Q 012799          350 KQP-------KTRMTGHQ---QLVNHVYFSPDGQWVASASFDKSIKLWNGTT----------GKFVAVFR-----GHVGP  404 (456)
Q Consensus       350 ~~~-------~~~~~~~~---~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~-----~~~~~  404 (456)
                      ...       ...+.++.   -.....+|+++|..+.+...|..|..|++..          ...+..+.     +|...
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~  370 (441)
T d1qnia2         291 DDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHA  370 (441)
T ss_dssp             HHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEE
T ss_pred             hhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcc
Confidence            211       11111111   1234568999998888999999999999741          12333442     44433


Q ss_pred             EEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEe---eCCCc
Q 012799          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG---SKDST  452 (456)
Q Consensus       405 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~---s~Dg~  452 (456)
                      +.+.                           +++|||+||+++   |.|..
T Consensus       371 ~~~~---------------------------t~~pdGk~l~s~~k~s~dr~  394 (441)
T d1qnia2         371 SLTE---------------------------SRDADGKWLVVLSKFSKDRF  394 (441)
T ss_dssp             TTTT---------------------------STTCCCCEEEEEESCCGGGS
T ss_pred             cccc---------------------------ccCCCCcEEEecCccccccC
Confidence            3333                           789999999999   55554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.37  E-value=2.1e-11  Score=112.47  Aligned_cols=145  Identities=10%  Similarity=0.091  Sum_probs=110.4

Q ss_pred             EEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe-----cCCCCEEEEEEcCCCCEEEEEeC---------CCeEEEEe
Q 012799          113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-----GHKNWVLCIAWSADGKHLVSGSK---------AGELQCWD  178 (456)
Q Consensus       113 ~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~---------dg~i~vwd  178 (456)
                      .+.|.++++++..  .|+.+.+||+.+++....+.     .|...|.++.|+|||++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4779999987764  57889999999998765554     34578999999999999998753         56789999


Q ss_pred             CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc------------------C
Q 012799          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH------------------T  240 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------~  240 (456)
                      +.+++..  .+..+...+..+.|+|     +|+.+|... ++.+++|+..+++.......+                  .
T Consensus        99 ~~~~~~~--~l~~~~~~~~~~~~SP-----DG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~  170 (470)
T d2bgra1          99 LNKRQLI--TEERIPNNTQWVTWSP-----VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (470)
T ss_dssp             TTTTEEC--CSSCCCTTEEEEEECS-----STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             CCCCccc--ccccCCcccccccccc-----CcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeec
Confidence            9988754  4777888899999999     999999864 578999999888766543221                  1


Q ss_pred             ccEEEEEeCCCC-eEEEEeCCCc-EEEEE
Q 012799          241 LAVTCVKWGGDG-VIYTGSQDCT-IKVWE  267 (456)
Q Consensus       241 ~~v~~~~~~~~~-~l~~~~~dg~-i~iwd  267 (456)
                      +....+.|+|+| .|+....|.+ +..|+
T Consensus       171 ~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         171 SAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             CCccccEECCCCCccceeEecCCcCceEE
Confidence            234567899999 7776655433 44443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.35  E-value=5.9e-10  Score=93.65  Aligned_cols=236  Identities=8%  Similarity=-0.064  Sum_probs=148.5

Q ss_pred             cEEEEEECCCCCeEEEEE-CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799          110 AVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  188 (456)
                      .-.+++++++|+++++.. ..+.+..++............-......++++++++++++....+.+++++-.++....  
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~--   92 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL--   92 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC--
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeee--
Confidence            457999999999766654 45677777665433222222223456789999999988777766677776655444332  


Q ss_pred             ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEE
Q 012799          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE  267 (456)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd  267 (456)
                      .........++++.+     +++.+++-..+..+..++...................+++++++ .+++...++.|..+|
T Consensus        93 ~~~~~~~p~~iavd~-----~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d  167 (260)
T d1rwia_          93 PFDGLNYPEGLAVDT-----QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE  167 (260)
T ss_dssp             CCCSCCSEEEEEECT-----TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             eeeeeeecccccccc-----cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccc
Confidence            222234567888877     77777776666677777765543322222223445788999988 556667778899999


Q ss_pred             CCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecC
Q 012799          268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (456)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  347 (456)
                      ...................+++.++                                    ++++++....+.|..++..
T Consensus       168 ~~~~~~~~~~~~~~~~p~gi~~d~~------------------------------------g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         168 AESNNQVVLPFTDITAPWGIAVDEA------------------------------------GTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             TTTCCEEECCCSSCCSEEEEEECTT------------------------------------CCEEEEETTTTEEEEECTT
T ss_pred             cccceeeeeeccccCCCccceeeee------------------------------------eeeeeeecCCCEEEEEeCC
Confidence            8765443332233445577788776                                    4557777778888888754


Q ss_pred             CCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799          348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (456)
Q Consensus       348 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  389 (456)
                      ...... .....-.....|+++++|+++++-..+++|+.++.
T Consensus       212 ~~~~~~-~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         212 STTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CSCCEE-CCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CCeEEE-EccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            332221 11222345789999999998877666777776654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.33  E-value=3.9e-10  Score=97.08  Aligned_cols=230  Identities=13%  Similarity=0.036  Sum_probs=154.6

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  189 (456)
                      .+..++++|||+++++...+++|+.|+... + ...+......+.+++|.++|+++++...++.+..|+..........+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            578899999999999988899998888553 3 34455567889999999999999988888888888765543222111


Q ss_pred             --cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC----------cCccEEEEEeCCCCeEEEE
Q 012799          190 --SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG----------HTLAVTCVKWGGDGVIYTG  257 (456)
Q Consensus       190 --~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~~~~~~~~~l~~~  257 (456)
                        .........+.+.+     +++++++.+.++.+..+|...+........          .......+.++.+..+++.
T Consensus       107 ~~~~~~~~~n~i~~~~-----~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~  181 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLS-----DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSN  181 (302)
T ss_dssp             EECTTCSCEEEEEESS-----SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEE
T ss_pred             cccCCccccceeEEcc-----CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeec
Confidence              22345577888888     888888888889999999887754432211          1234566777655567777


Q ss_pred             eCCCcEEEEECCCCeEEEEe--ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799          258 SQDCTIKVWETTQGKLIREL--KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (456)
Q Consensus       258 ~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (456)
                      +..+.|..++..........  .........+++.++                                    ++++++.
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~d------------------------------------G~l~va~  225 (302)
T d2p4oa1         182 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE------------------------------------GNLYGAT  225 (302)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTT------------------------------------CCEEEEC
T ss_pred             CCCCeEEeccccccccccccccccCCCCCcceEECCC------------------------------------CCEEEEE
Confidence            78888888887654322111  111223345666665                                    5557777


Q ss_pred             eCCCcEEEEecCCCCCCccccccccccEeEEEE---CCCCCEEEEEECCC
Q 012799          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF---SPDGQWVASASFDK  382 (456)
Q Consensus       336 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~---sp~~~~l~s~~~dg  382 (456)
                      ..++.|..++..............-...++++|   ++|++.|+.++..|
T Consensus       226 ~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         226 HIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             BTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence            788899999854322222222223345789999   67888887766543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.30  E-value=4.7e-11  Score=105.98  Aligned_cols=241  Identities=12%  Similarity=0.036  Sum_probs=149.3

Q ss_pred             CCcccEEEEEECCCCCeEEEEE-CCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCCC--EEEEEeCCC---------
Q 012799          106 GHTEAVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGK--HLVSGSKAG---------  172 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~-~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~l~s~~~dg---------  172 (456)
                      .|.-......++|||++|++.. .+++|.++|+.+++....+. .+...+..++|+|+++  +++..+.+.         
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            4556677777789999987665 67899999999998877664 4677899999999998  454444432         


Q ss_pred             --------eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC-------------------------
Q 012799          173 --------ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-------------------------  219 (456)
Q Consensus       173 --------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------------------------  219 (456)
                              .+..+|..+.+...+...  ......+.++|     +|+++++.+.+                         
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v--~~~p~~v~~sp-----dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~  221 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIV--DGNLDNTDADY-----TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVER  221 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEE--SSCCCCEEECS-----SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHH
T ss_pred             cccccccceEEeecCccceeeEEEec--CCCccceEECC-----CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccc
Confidence                    234577776655432222  23456677777     77777666533                         


Q ss_pred             ----------------CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-e-EEEEeCCCcEEEEECCCCeEEEEeecCC
Q 012799          220 ----------------GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-V-IYTGSQDCTIKVWETTQGKLIRELKGHG  281 (456)
Q Consensus       220 ----------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~  281 (456)
                                      +.+.+++....+.+..+..... ...+.++|+| + ++++..+++|.+||+.+..  ..+..+.
T Consensus       222 ~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~--~~~~~~~  298 (441)
T d1qnia2         222 IAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD--DLFEDKI  298 (441)
T ss_dssp             HHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHH--HHTTTSS
T ss_pred             eEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhh--hHhhccC
Confidence                            3444554445555555654443 4678999999 4 4566789999999986522  1111111


Q ss_pred             cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCC---------CCCC
Q 012799          282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV---------SKQP  352 (456)
Q Consensus       282 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~  352 (456)
                      ....++...+...+..                       ....+...+..+.+...|..|..|++..         ....
T Consensus       299 ~~~~~~~~~~~~glgp-----------------------lh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v  355 (441)
T d1qnia2         299 ELRDTIVAEPELGLGP-----------------------LHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYI  355 (441)
T ss_dssp             CGGGGEEECCBCCSCE-----------------------EEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCE
T ss_pred             CcceEEEeecccccCc-----------------------ccceecCCceEEEcccccceEEEeccchhhhhhccCCCcee
Confidence            1122222222110000                       0000111245577778899999999631         1112


Q ss_pred             ccc-----cccccccEeEEEECCCCCEEEEEE
Q 012799          353 KTR-----MTGHQQLVNHVYFSPDGQWVASAS  379 (456)
Q Consensus       353 ~~~-----~~~~~~~v~~~~~sp~~~~l~s~~  379 (456)
                      ..+     ..+|...+.+.+++|||+||++++
T Consensus       356 ~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         356 RQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             EeccccccCCCCCccccccccCCCCcEEEecC
Confidence            222     257887888889999999999994

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=2.1e-08  Score=84.44  Aligned_cols=230  Identities=15%  Similarity=0.135  Sum_probs=139.4

Q ss_pred             cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCCCccccccCcccceEEEEecccccC
Q 012799          131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG---ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN  207 (456)
Q Consensus       131 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  207 (456)
                      .|.|.|.+.. ....+..+...+...+|||||+.||......   .+.+.+...+...  .+..+........|+|    
T Consensus        20 ~l~i~d~dG~-~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sp----   92 (269)
T d2hqsa1          20 ELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--QVASFPRHNGAPAFSP----   92 (269)
T ss_dssp             EEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--EEECCSSCEEEEEECT----
T ss_pred             EEEEEcCCCC-CcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee--EEeeeecccccceecC----
Confidence            5777787644 4444455677889999999999999765543   4666677666543  3555677788899999    


Q ss_pred             CCCCEEEEEeC-CCc--EEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCC--cEEEEECCCCeEEEEeecC
Q 012799          208 APCRRFVSASK-DGD--ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDC--TIKVWETTQGKLIRELKGH  280 (456)
Q Consensus       208 ~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg--~i~iwd~~~~~~~~~~~~~  280 (456)
                       +|..++.... ++.  +..+........ .............+++++  .+++...+|  .|...++..+.... +...
T Consensus        93 -dg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~  169 (269)
T d2hqsa1          93 -DGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWE  169 (269)
T ss_dssp             -TSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCS
T ss_pred             -CCCeeeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeeccccccee-eecc
Confidence             8888887654 322  223333333222 223334444555666665  555555555  45566666654333 3334


Q ss_pred             CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE-eCCCcEEEEecCCCCCCccccccc
Q 012799          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG-SDDFTMFLWEPAVSKQPKTRMTGH  359 (456)
Q Consensus       281 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~  359 (456)
                      ........++|+                                    +..++.. ...+...+|.......... ...+
T Consensus       170 ~~~~~~~~~spd------------------------------------g~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~  212 (269)
T d2hqsa1         170 GSQNQDADVSSD------------------------------------GKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSS  212 (269)
T ss_dssp             SSEEEEEEECTT------------------------------------SSEEEEEEECSSCEEEEEEETTTCCEE-ECCC
T ss_pred             cccccccccccc------------------------------------cceeEEEeecCCceeeeEeecccccce-Eeec
Confidence            555666778887                                    3334444 4444545544333333332 3334


Q ss_pred             cccEeEEEECCCCCEEEEEECC---CcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          360 QQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       360 ~~~v~~~~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      ........|||||++|+..+..   ..++++++..+.. ..+....+.+...
T Consensus       213 ~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p  263 (269)
T d2hqsa1         213 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFP  263 (269)
T ss_dssp             SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEE
T ss_pred             CccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeE
Confidence            4556778999999998765543   4688999876654 4455566677777

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.20  E-value=1.2e-08  Score=87.81  Aligned_cols=241  Identities=11%  Similarity=0.118  Sum_probs=148.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCCCCccccc---cCcccceEEEEecccccCCCCCEEEEEeC
Q 012799          149 HKNWVLCIAWSADGKHLVSGSK-------AGELQCWDPQTGKPSGNPL---SGHKKWITGISWEPVHLNAPCRRFVSASK  218 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~  218 (456)
                      .-.....++|.++|++.++...       +|.|..||..++.......   ......-..+.|.+     +++.++++..
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-----dg~~l~vad~   90 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-----DANQLFVADM   90 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-----SSSEEEEEET
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-----CCCEEEEEEC
Confidence            3345677899999997776433       4679999988776432111   11122356788888     8888888887


Q ss_pred             CCcEEEEECCCCeEEEEecCcC----ccEEEEEeCCCCeEEEEeCC----------------CcEEEEECCCCeEEEEee
Q 012799          219 DGDARIWDVSLRKCVICLSGHT----LAVTCVKWGGDGVIYTGSQD----------------CTIKVWETTQGKLIRELK  278 (456)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~  278 (456)
                      .+.+..+|..............    ...+.+++.++|.++.+...                |.|..++.. ++......
T Consensus        91 ~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~  169 (314)
T d1pjxa_          91 RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred             CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC
Confidence            7788888877654332221111    13577899999955554322                334444432 33222221


Q ss_pred             cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc----
Q 012799          279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT----  354 (456)
Q Consensus       279 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----  354 (456)
                       .-..-+.++++++..-                               .....+++-+..+.|..||+........    
T Consensus       170 -~~~~pNGi~~~~d~d~-------------------------------~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~  217 (314)
T d1pjxa_         170 -AFQFPNGIAVRHMNDG-------------------------------RPYQLIVAETPTKKLWSYDIKGPAKIENKKVW  217 (314)
T ss_dssp             -EESSEEEEEEEECTTS-------------------------------CEEEEEEEETTTTEEEEEEEEETTEEEEEEEE
T ss_pred             -CcceeeeeEECCCCCc-------------------------------ceeEEEEEeecccceEEeeccCccccceeeEE
Confidence             1222355666665210                               0001345556778898888654332211    


Q ss_pred             -ccc-cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccc
Q 012799          355 -RMT-GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM  432 (456)
Q Consensus       355 -~~~-~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~  432 (456)
                       .+. .+......+++..+|++.++....+.|.+||...++.+..+..+....+++                        
T Consensus       218 ~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~------------------------  273 (314)
T d1pjxa_         218 GHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNL------------------------  273 (314)
T ss_dssp             EECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEE------------------------
T ss_pred             EEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEE------------------------
Confidence             111 122345689999999998888888999999988888777777666677788                        


Q ss_pred             cceeEecCCC-eEEEeeCCCceE
Q 012799          433 SLYSWSADSR-LLLSGSKDSTLK  454 (456)
Q Consensus       433 ~~~~~s~dg~-~l~s~s~Dg~v~  454 (456)
                         +|.||++ ++++.+.+|.|.
T Consensus       274 ---afg~d~~~lyVt~~~~g~i~  293 (314)
T d1pjxa_         274 ---HFKPQTKTIFVTEHENNAVW  293 (314)
T ss_dssp             ---EECTTSSEEEEEETTTTEEE
T ss_pred             ---EEeCCCCEEEEEECCCCcEE
Confidence               8899997 556666777764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=3.7e-09  Score=88.66  Aligned_cols=232  Identities=9%  Similarity=0.006  Sum_probs=142.1

Q ss_pred             CCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC
Q 012799          151 NWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL  229 (456)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  229 (456)
                      .....+++.++|+..++. +..+.+..++............+ ......+++.+     ++..+++....+.+++++-.+
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~-----~g~i~v~d~~~~~i~~~~~~~   87 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDG-----AGTVYVTDFNNRVVTLAAGSN   87 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEECT-----TCCEEEEETTTEEEEECTTCS
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcC-----CCCEEEeeeeeceeeeeeecc
Confidence            456899999999976665 45577777776554332211221 23346677777     788777776666777666555


Q ss_pred             CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccC
Q 012799          230 RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (456)
Q Consensus       230 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  308 (456)
                      ...+.... ......++++.+++ .+++-..+..+..++...................+++.++                
T Consensus        88 ~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~----------------  150 (260)
T d1rwia_          88 NQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS----------------  150 (260)
T ss_dssp             CCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTT----------------
T ss_pred             ceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCC----------------
Confidence            54443332 23557889999988 4444444556777776554322222222233456777665                


Q ss_pred             ChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (456)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  388 (456)
                                          ++.+++...++.|..+|....... ......-.....++++++|+++++....+.|..++
T Consensus       151 --------------------g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         151 --------------------GNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             --------------------CCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             --------------------CCEeeeccccccccccccccceee-eeeccccCCCccceeeeeeeeeeeecCCCEEEEEe
Confidence                                455777788888999986543322 22223345578999999999888887888888888


Q ss_pred             CCCCeEEEEEe-cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceE
Q 012799          389 GTTGKFVAVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLK  454 (456)
Q Consensus       389 ~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~  454 (456)
                      ..... ...+. ..-.....|                           +++++|.++++-..+++|+
T Consensus       210 ~~~~~-~~~~~~~~~~~P~~i---------------------------~~d~~g~l~vad~~~~rI~  248 (260)
T d1rwia_         210 AGSTT-STVLPFTGLNTPLAV---------------------------AVDSDRTVYVADRGNDRVV  248 (260)
T ss_dssp             TTCSC-CEECCCCSCCCEEEE---------------------------EECTTCCEEEEEGGGTEEE
T ss_pred             CCCCe-EEEEccCCCCCeEEE---------------------------EEeCCCCEEEEECCCCEEE
Confidence            65432 22221 222334566                           8899999888766666665

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.16  E-value=2.3e-08  Score=85.77  Aligned_cols=212  Identities=11%  Similarity=0.058  Sum_probs=139.3

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC
Q 012799          151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR  230 (456)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  230 (456)
                      ..+..+++.|||+++++...+++|..|+......   .+......+.+++|.+     +|+++++...++.+..|+....
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~---~~~~~~~~~~gla~~~-----dG~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ---IHATVEGKVSGLAFTS-----NGDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE---EEEECSSEEEEEEECT-----TSCEEEEEECTTSCEEEEEECT
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE---EEEcCCCCcceEEEcC-----CCCeEEEecCCceEEEEEeccc
Confidence            3688999999999999999999999998664322   3444556789999998     9999998888888888876432


Q ss_pred             --eEEEE-ecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC----------CcceEEEEecCcceee
Q 012799          231 --KCVIC-LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGH----------GHWVNSLALSTEYALR  296 (456)
Q Consensus       231 --~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~  296 (456)
                        ..... ..........+++.+++ .+++.+.++.+..+|...+.........          ......+.+..     
T Consensus       100 ~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-----  174 (302)
T d2p4oa1         100 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-----  174 (302)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-----
T ss_pred             ccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-----
Confidence              22111 12344567899999999 5555567888988998876543322211          01122333322     


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc-cccccccEeEEEECCCCCEE
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSPDGQWV  375 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l  375 (456)
                                                      ...+++.+..+.|+.++.......... ..........++++++|++.
T Consensus       175 --------------------------------~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~  222 (302)
T d2p4oa1         175 --------------------------------NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLY  222 (302)
T ss_dssp             --------------------------------TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEE
T ss_pred             --------------------------------CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEE
Confidence                                            234667777888888886654322211 11123345679999999988


Q ss_pred             EEEECCCcEEEEeCCCCeEEEEEe--cccccEEEE
Q 012799          376 ASASFDKSIKLWNGTTGKFVAVFR--GHVGPVYQI  408 (456)
Q Consensus       376 ~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i  408 (456)
                      ++...++.|..++.. ++......  ......+++
T Consensus       223 va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~v  256 (302)
T d2p4oa1         223 GATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV  256 (302)
T ss_dssp             EECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred             EEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEE
Confidence            888889999999864 44433332  223346677

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=4.1e-08  Score=82.99  Aligned_cols=231  Identities=13%  Similarity=0.199  Sum_probs=145.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc-----cCcccceEEEEecccccCCCCCEEEE-EeCCCcEEEE
Q 012799          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL-----SGHKKWITGISWEPVHLNAPCRRFVS-ASKDGDARIW  225 (456)
Q Consensus       152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~l~~-~~~dg~i~iw  225 (456)
                      ....++++++++.+++-..++.|++||.+ |+.+...-     .+.......+.+.+.    .+..+++ .+.++.|..+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN----SGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT----TTEEEEEECGGGCEEEEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccccccccc----ccccceeccCCccccccc
Confidence            46889999999988877778899999965 43322110     011112334444331    2333433 3345577777


Q ss_pred             ECCCCeEEEEe-cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceeeecccc
Q 012799          226 DVSLRKCVICL-SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFD  301 (456)
Q Consensus       226 d~~~~~~~~~~-~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~  301 (456)
                      +.. ++....+ .........+++.+++ .+++....+.+.+++.. ++.+..+.  .+......+++.++         
T Consensus        99 ~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~---------  167 (279)
T d1q7fa_          99 NQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK---------  167 (279)
T ss_dssp             CTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS---------
T ss_pred             ccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeeccc---------
Confidence            754 4444444 2345567889999988 55555556678888754 56666553  23445566777665         


Q ss_pred             CCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc--ccccccEeEEEECCCCCEEEEEE
Q 012799          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVASAS  379 (456)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~~  379 (456)
                                                 ++.+++....+.|++||... . ....+  .+.......+++.++|+++++-.
T Consensus       168 ---------------------------g~i~v~d~~~~~V~~~d~~G-~-~~~~~g~~g~~~~P~giavD~~G~i~Vad~  218 (279)
T d1q7fa_         168 ---------------------------QEIFISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGEILIADN  218 (279)
T ss_dssp             ---------------------------SEEEEEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred             ---------------------------eeEEeeeccccceeeeecCC-c-eeeeecccccccCCcccccccCCeEEEEEC
Confidence                                       44577778888999998533 2 22222  23445678999999999877754


Q ss_pred             C-CCcEEEEeCCCCeEEEEEeccc--ccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799          380 F-DKSIKLWNGTTGKFVAVFRGHV--GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT  456 (456)
Q Consensus       380 ~-dg~i~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW  456 (456)
                      . ++.|.+|+ .+|+.+..+....  .....+                           ++.+||.+++ ++.+.+|++|
T Consensus       219 ~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~v---------------------------av~~dG~l~V-~~~n~~v~~f  269 (279)
T d1q7fa_         219 HNNFNLTIFT-QDGQLISALESKVKHAQCFDV---------------------------ALMDDGSVVL-ASKDYRLYIY  269 (279)
T ss_dssp             SSSCEEEEEC-TTSCEEEEEEESSCCSCEEEE---------------------------EEETTTEEEE-EETTTEEEEE
T ss_pred             CCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEE---------------------------EEeCCCcEEE-EeCCCeEEEE
Confidence            3 45799998 5788877765332  235566                           7899997555 5678888875

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.11  E-value=7.3e-08  Score=82.78  Aligned_cols=238  Identities=10%  Similarity=0.075  Sum_probs=142.8

Q ss_pred             cEEEEEECCCCCeEEEEEC-------CCcEEEEeCCCCcceeEEec----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799          110 AVLSVAFSPDGRQLASGSG-------DTTVRLWDLNTQTPMFKCTG----HKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~-------d~~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  178 (456)
                      ....++|.++|+++++...       +++|..||..++........    .......++|.++++.++++...+.|...+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            3456789999997776432       46788999887764433221    123467899999999888888777888999


Q ss_pred             CCCCCCcccccc--Cc-ccceEEEEecccccCCCCCEEEEEeC---------------CCcEEEEECCCCeEEEEecCcC
Q 012799          179 PQTGKPSGNPLS--GH-KKWITGISWEPVHLNAPCRRFVSASK---------------DGDARIWDVSLRKCVICLSGHT  240 (456)
Q Consensus       179 ~~~~~~~~~~~~--~~-~~~v~~~~~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~  240 (456)
                      .+.+........  +. -.....+.+.+     +|+..++-..               .|.|..++.. ++..... ..-
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~-----~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~  171 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDY-----EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAF  171 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECT-----TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECC-----CCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCc
Confidence            876543211111  11 11246677777     7777776322               2334444432 2222221 222


Q ss_pred             ccEEEEEeCCCC-----eEEE-EeCCCcEEEEECCCCeEEE------Eeec-CCcceEEEEecCcceeeeccccCCCCcc
Q 012799          241 LAVTCVKWGGDG-----VIYT-GSQDCTIKVWETTQGKLIR------ELKG-HGHWVNSLALSTEYALRTGAFDHTGKQY  307 (456)
Q Consensus       241 ~~v~~~~~~~~~-----~l~~-~~~dg~i~iwd~~~~~~~~------~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~  307 (456)
                      ...+.++|++++     .|++ -+..+.|..||+.....+.      .+.. .......+++..+               
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~---------------  236 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED---------------  236 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT---------------
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecC---------------
Confidence            334667887653     3444 4567788888865432221      1111 1112344555554               


Q ss_pred             CChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCE-EEEEECCCcEEE
Q 012799          308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW-VASASFDKSIKL  386 (456)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~i  386 (456)
                                           ++.+++....+.|.+||..... ....+......+++++|.|+++. .++.+.+|.|..
T Consensus       237 ---------------------GnlyVa~~~~g~I~~~dp~~g~-~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~  294 (314)
T d1pjxa_         237 ---------------------NNLLVANWGSSHIEVFGPDGGQ-PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             ---------------------CCEEEEEETTTEEEEECTTCBS-CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ---------------------CcEEEEEcCCCEEEEEeCCCCE-EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEE
Confidence                                 5557777788999999965443 33334444567899999999874 566667788888


Q ss_pred             EeCCC
Q 012799          387 WNGTT  391 (456)
Q Consensus       387 wd~~~  391 (456)
                      +++..
T Consensus       295 ~~~~~  299 (314)
T d1pjxa_         295 FEWQR  299 (314)
T ss_dssp             EECSS
T ss_pred             EECCC
Confidence            88653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.10  E-value=1.7e-07  Score=79.05  Aligned_cols=236  Identities=14%  Similarity=0.178  Sum_probs=153.5

Q ss_pred             cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEec------CCCCEEEEEEcCCC-CEEEEE-eCCCeEEEEeCCC
Q 012799          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG------HKNWVLCIAWSADG-KHLVSG-SKAGELQCWDPQT  181 (456)
Q Consensus       110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~-~~l~s~-~~dg~i~vwd~~~  181 (456)
                      .-..++++++|+++++-..+..|++||.+ ++.+..+..      .......+++.++. ..+++. +.++.|..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            46899999999988877778899999965 665555531      12234566666554 344433 345577777754 


Q ss_pred             CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cCcCccEEEEEeCCCC-eEEEEe
Q 012799          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIYTGS  258 (456)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~  258 (456)
                      +................++..+     ++..+++....+.+.+++.. ++.+..+  ..+......+++.+++ .+++..
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~-----~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~  175 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDN-----KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  175 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECT-----TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             ccceeecCCCcccccceecccc-----CCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeec
Confidence            4333222223344566777776     77888877777788888854 4445544  3455678889999998 666666


Q ss_pred             CCCcEEEEECCCCeEEEEeec--CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe
Q 012799          259 QDCTIKVWETTQGKLIRELKG--HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (456)
                      ..+.|++||.. ++.+.++..  .......+++.++                                    ++.+++-.
T Consensus       176 ~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~------------------------------------G~i~Vad~  218 (279)
T d1q7fa_         176 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSN------------------------------------GEILIADN  218 (279)
T ss_dssp             GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTT------------------------------------CCEEEEEC
T ss_pred             cccceeeeecC-CceeeeecccccccCCcccccccC------------------------------------CeEEEEEC
Confidence            77899999964 566666632  3334567777776                                    44455544


Q ss_pred             -CCCcEEEEecCCCCCCccccc--cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe
Q 012799          337 -DDFTMFLWEPAVSKQPKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (456)
Q Consensus       337 -~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~  393 (456)
                       .++.|.+|+. .+. .+..+.  ........+++.|+|.+++ ++.+++|++|......
T Consensus       219 ~~~~~v~~f~~-~G~-~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         219 HNNFNLTIFTQ-DGQ-LISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             SSSCEEEEECT-TSC-EEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             CCCcEEEEECC-CCC-EEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence             3456888883 332 222221  2223578899999997655 5678999999987654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=1.3e-07  Score=79.34  Aligned_cols=225  Identities=16%  Similarity=0.165  Sum_probs=134.9

Q ss_pred             cccccccccCCcccEEEEEECCCCCeEEEEECCC---cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC-CC
Q 012799           97 VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDT---TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AG  172 (456)
Q Consensus        97 ~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~---~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg  172 (456)
                      .+...+.+..+.+.+...+|||||+.||......   .+.+.+...+.. ..+..+........|+|+|+.++.... ++
T Consensus        27 dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~  105 (269)
T d2hqsa1          27 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTG  105 (269)
T ss_dssp             TSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             CCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCC
Confidence            3444555666778889999999999999876443   466667665543 455567888999999999998887654 33


Q ss_pred             e--EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEE-EEEeCCC--cEEEEECCCCeEEEEecCcCccEEEEE
Q 012799          173 E--LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDG--DARIWDVSLRKCVICLSGHTLAVTCVK  247 (456)
Q Consensus       173 ~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l-~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~  247 (456)
                      .  +..+........  .............+++     ++..+ ++...+|  .|...++..+... .+...........
T Consensus       106 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~  177 (269)
T d2hqsa1         106 SLNLYVMDLASGQIR--QVTDGRSNNTEPTWFP-----DSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDAD  177 (269)
T ss_dssp             SCEEEEEETTTCCEE--ECCCCSSCEEEEEECT-----TSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEE
T ss_pred             ccceeecccccccce--eeeecccccccccccc-----ccccceecccccCCceEeeeecccccce-eeecccccccccc
Confidence            3  233332222221  2222333334444544     44444 4444455  4555566555433 3344566777889


Q ss_pred             eCCCC-eEEEE-eCCCc--EEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799          248 WGGDG-VIYTG-SQDCT--IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (456)
Q Consensus       248 ~~~~~-~l~~~-~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (456)
                      |+|++ .++.. ...+.  +.+.|...+..  .............|+|+                               
T Consensus       178 ~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPD-------------------------------  224 (269)
T d2hqsa1         178 VSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPN-------------------------------  224 (269)
T ss_dssp             ECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTT-------------------------------
T ss_pred             cccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCC-------------------------------
Confidence            99999 44444 44444  44455555443  23334455677889998                               


Q ss_pred             ccCCCCCEEEEEeC---CCcEEEEecCCCCCCccccccccccEeEEEECC
Q 012799          324 IKGNAPERLVSGSD---DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (456)
Q Consensus       324 ~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp  370 (456)
                           ++.|+..+.   ...|+++++....  ...+......+...+|||
T Consensus       225 -----G~~i~f~s~~~~~~~l~~~~~dg~~--~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         225 -----GTMVIYSSSQGMGSVLNLVSTDGRF--KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             -----SSEEEEEEEETTEEEEEEEETTSCC--EEECCCSSSEEEEEEECC
T ss_pred             -----CCEEEEEEcCCCCcEEEEEECCCCC--EEEEeCCCCcEEeEEeCC
Confidence                 444554433   3467888865433  334555567788899998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.05  E-value=7.3e-08  Score=84.83  Aligned_cols=266  Identities=6%  Similarity=-0.031  Sum_probs=140.0

Q ss_pred             EEEEEC--CCcEEEEeCCC--Ccce--eEE-ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc-ccCccc
Q 012799          123 LASGSG--DTTVRLWDLNT--QTPM--FKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP-LSGHKK  194 (456)
Q Consensus       123 l~~~~~--d~~v~vwd~~~--~~~~--~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~  194 (456)
                      |+.|+.  .+.|.++.++.  ++..  ... ......+.-|+|+|++++|+++.. +.+..|.+......... ......
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence            555653  44666555443  3321  111 224455677999999999988765 56777766542211100 000111


Q ss_pred             ceEEEEecccccCCCCCEE--EEEe-CCCcEEEEECCCC-------------e---EEEE-ecCcCccEEEEEeCCCC-e
Q 012799          195 WITGISWEPVHLNAPCRRF--VSAS-KDGDARIWDVSLR-------------K---CVIC-LSGHTLAVTCVKWGGDG-V  253 (456)
Q Consensus       195 ~v~~~~~~~~~~~~~~~~l--~~~~-~dg~i~iwd~~~~-------------~---~~~~-~~~~~~~v~~~~~~~~~-~  253 (456)
                      ....+.+++     +++.+  +++. ..+.|..+.+...             +   .... -......+.++.|+|+| +
T Consensus        84 ~p~~v~~~~-----~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~  158 (365)
T d1jofa_          84 HPRANDADT-----NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY  158 (365)
T ss_dssp             SGGGGCTTS-----CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred             CcEEEEECC-----CCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCE
Confidence            122233333     66533  2222 2345554443211             0   0111 11123347899999999 5


Q ss_pred             EEEEeC-CCcEEEEECCCC-eEE--EEe--ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799          254 IYTGSQ-DCTIKVWETTQG-KLI--REL--KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (456)
Q Consensus       254 l~~~~~-dg~i~iwd~~~~-~~~--~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (456)
                      ++++.. ...|.+|+.... ...  ...  .........++++|++.+                                
T Consensus       159 l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~--------------------------------  206 (365)
T d1jofa_         159 LYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY--------------------------------  206 (365)
T ss_dssp             EEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE--------------------------------
T ss_pred             EEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCce--------------------------------
Confidence            666554 457888876543 222  122  123456788999988432                                


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCccc------------------cccccccEeEEEECCCCCEEEEEEC------CCc
Q 012799          328 APERLVSGSDDFTMFLWEPAVSKQPKTR------------------MTGHQQLVNHVYFSPDGQWVASASF------DKS  383 (456)
Q Consensus       328 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------------~~~~~~~v~~~~~sp~~~~l~s~~~------dg~  383 (456)
                         ..++.-.+++|.+|++.........                  ...+......+.++|||++|+++..      .+.
T Consensus       207 ---~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~  283 (365)
T d1jofa_         207 ---LYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGY  283 (365)
T ss_dssp             ---EEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCE
T ss_pred             ---EEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceE
Confidence               2355556889999997654322110                  1122234667899999999887642      123


Q ss_pred             EEEEeCCCCeEEEE-Ee-----cccccEEEEEeeeeeeecCCCCceeeecccccccceeEec-CCCeEEEe-eCCCceEE
Q 012799          384 IKLWNGTTGKFVAV-FR-----GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSG-SKDSTLKV  455 (456)
Q Consensus       384 i~iwd~~~~~~~~~-~~-----~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~s~-s~Dg~v~i  455 (456)
                      |..|++.....+.. ..     .....-..+                           +++| +|++|+.+ ..++.|.|
T Consensus       284 i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i---------------------------~~~p~~G~~l~va~~~s~~v~v  336 (365)
T d1jofa_         284 IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV---------------------------SPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             EEEEEECTTSCEEEEEEEEECSSCCTTCCCE---------------------------EECTTCTTEEEEECSSSCEEEE
T ss_pred             EEEEEecCCCceeeEeEeeEEEcCCCCccEE---------------------------EecCCCCCEEEEEeCCCCeEEE
Confidence            66676654222211 11     011112223                           7888 78977666 56788887


Q ss_pred             C
Q 012799          456 T  456 (456)
Q Consensus       456 W  456 (456)
                      |
T Consensus       337 ~  337 (365)
T d1jofa_         337 Y  337 (365)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.01  E-value=5.8e-08  Score=85.48  Aligned_cols=245  Identities=8%  Similarity=-0.005  Sum_probs=141.5

Q ss_pred             CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe--cCCCCEEEEEEcCCCCEEE--EEe-CCCeEEEEeCCC
Q 012799          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKHLV--SGS-KAGELQCWDPQT  181 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~--s~~-~dg~i~vwd~~~  181 (456)
                      +...+.-|+|+|++++|.++.. +.+..|.+.....+....  ........++++++++.++  ++. ..+.|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            4455667999999999988764 568888776433232221  2233456677888887443  322 234555443321


Q ss_pred             CC------------Cc----cccccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCC-eEE--EEe--cCc
Q 012799          182 GK------------PS----GNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLR-KCV--ICL--SGH  239 (456)
Q Consensus       182 ~~------------~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~--~~~--~~~  239 (456)
                      ..            ..    ..........+.++.|+|     +|+++++++. ...|.+|+.... ...  ...  ...
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-----dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~  191 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-----TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP  191 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECC-----CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC
Confidence            11            00    000111223467899999     9998888765 347888876533 221  111  223


Q ss_pred             CccEEEEEeCCCC-eE-EEEeCCCcEEEEECCCCeEE--EEee-----------------cCCcceEEEEecCcceeeec
Q 012799          240 TLAVTCVKWGGDG-VI-YTGSQDCTIKVWETTQGKLI--RELK-----------------GHGHWVNSLALSTEYALRTG  298 (456)
Q Consensus       240 ~~~v~~~~~~~~~-~l-~~~~~dg~i~iwd~~~~~~~--~~~~-----------------~~~~~i~~~~~~~~~~~~~~  298 (456)
                      ......++|+|++ ++ ++...+++|.+|++..++..  ....                 ........+.++|+      
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spd------  265 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS------  265 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT------
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCC------
Confidence            5678999999999 44 44556889999998765322  1111                 01122445667776      


Q ss_pred             cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC------CCcEEEEecCCCCCCcccc-----ccccccEeEEE
Q 012799          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD------DFTMFLWEPAVSKQPKTRM-----TGHQQLVNHVY  367 (456)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~  367 (456)
                                                    +++++++..      .+.|..|++..........     .........++
T Consensus       266 ------------------------------G~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~  315 (365)
T d1jofa_         266 ------------------------------GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVS  315 (365)
T ss_dssp             ------------------------------SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEE
T ss_pred             ------------------------------CCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEE
Confidence                                          455655432      2237677765443322111     12234467799


Q ss_pred             ECC-CCCEEEEE-ECCCcEEEEeCCCCe
Q 012799          368 FSP-DGQWVASA-SFDKSIKLWNGTTGK  393 (456)
Q Consensus       368 ~sp-~~~~l~s~-~~dg~i~iwd~~~~~  393 (456)
                      ++| +|++|+++ ..++.|.+|++....
T Consensus       316 ~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         316 PCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             ECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             ecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            998 89987665 567899999876543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.00  E-value=1.3e-06  Score=75.03  Aligned_cols=207  Identities=11%  Similarity=0.053  Sum_probs=134.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC----CCcEEEE
Q 012799          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK----DGDARIW  225 (456)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~----dg~i~iw  225 (456)
                      ...+..++|.++|++.++-...+.|..|+.+++.... ...........+++.+     +|+.+++...    .+.+...
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~-~~~~~~~~p~gla~~~-----dG~l~va~~~~~~~~~~i~~~  112 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-PFVSHKANPAAIKIHK-----DGRLFVCYLGDFKSTGGIFAA  112 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECSSSSEEEEEECT-----TSCEEEEECTTSSSCCEEEEE
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEE-EEeCCCCCeeEEEECC-----CCCEEEEecCCCccceeEEEE
Confidence            3445689999999977777788999999987765433 2333445678899988     8887776543    2345555


Q ss_pred             ECCCCeEEEEecC--cCccEEEEEeCCCCeEEEEeCC-------CcEEEEECCCCeEEEEeecCCcceEEEEecCcceee
Q 012799          226 DVSLRKCVICLSG--HTLAVTCVKWGGDGVIYTGSQD-------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (456)
Q Consensus       226 d~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  296 (456)
                      +............  .......+++.++|.++.+...       +.+..++...+. +..+...-...+.++|+++    
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~d----  187 (319)
T d2dg1a1         113 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTD----  187 (319)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTT----
T ss_pred             cCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccc----
Confidence            5555444333321  2345788999999966665543       235555544332 3322222234567888887    


Q ss_pred             eccccCCCCccCChHHHHHHHHhhhhhccCCCCC-EEEEEeCCCcEEEEecCCCCCCcccc-------ccccccEeEEEE
Q 012799          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-RLVSGSDDFTMFLWEPAVSKQPKTRM-------TGHQQLVNHVYF  368 (456)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~  368 (456)
                                                      ++ .+++-+..+.|+.||+..........       .........+++
T Consensus       188 --------------------------------g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~v  235 (319)
T d2dg1a1         188 --------------------------------EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI  235 (319)
T ss_dssp             --------------------------------SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred             --------------------------------cceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeE
Confidence                                            33 35666778899999976544322211       111223567999


Q ss_pred             CCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          369 SPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       369 sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                      .++|++.++....|.|.+|| .+|+.+..+..
T Consensus       236 D~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~  266 (319)
T d2dg1a1         236 DSDDNLYVAMYGQGRVLVFN-KRGYPIGQILI  266 (319)
T ss_dssp             BTTCCEEEEEETTTEEEEEC-TTSCEEEEEEC
T ss_pred             cCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeC
Confidence            99999888888899999999 57998887763

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.92  E-value=3.7e-06  Score=72.10  Aligned_cols=228  Identities=12%  Similarity=0.077  Sum_probs=140.3

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCCC
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK----AGELQCWDPQTGKP  184 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~  184 (456)
                      ..+..++|.++|++.++-...+.|..|+.++++..............+++.++|+++++...    .+.+...+...+..
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            34568999999997777778889999998877666666566778899999999998777543    23455555554443


Q ss_pred             ccccc-cCcccceEEEEecccccCCCCCEEEEEeC------CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE-E
Q 012799          185 SGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI-Y  255 (456)
Q Consensus       185 ~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~  255 (456)
                      ..... .........+.+.+     +|++.++...      .+.+..++..... +..+...-...+.++|++++ .| +
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~-----~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyv  193 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDS-----KGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWV  193 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECT-----TSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             eeeccCCCcccCCcceeEEe-----ccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEE
Confidence            22111 11123456777777     8876665322      1235555544332 22222223445789999998 45 4


Q ss_pred             EEeCCCcEEEEECCCC-eEEEEe-------ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799          256 TGSQDCTIKVWETTQG-KLIREL-------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (456)
Q Consensus       256 ~~~~dg~i~iwd~~~~-~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (456)
                      +-+..+.|..||+... ......       .........+++..+                                   
T Consensus       194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~-----------------------------------  238 (319)
T d2dg1a1         194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD-----------------------------------  238 (319)
T ss_dssp             EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT-----------------------------------
T ss_pred             ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCC-----------------------------------
Confidence            4556789999987642 111111       111122345666655                                   


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCcccc------ccccccEeEEEECCCCCEEEEEEC
Q 012799          328 APERLVSGSDDFTMFLWEPAVSKQPKTRM------TGHQQLVNHVYFSPDGQWVASASF  380 (456)
Q Consensus       328 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~sp~~~~l~s~~~  380 (456)
                       ++..++....+.|.+||. .++ .+..+      .++...+++++|.|++..+++...
T Consensus       239 -G~l~Va~~~~g~V~~~~p-~G~-~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         239 -DNLYVAMYGQGRVLVFNK-RGY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             -CCEEEEEETTTEEEEECT-TSC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             -CCEEEEEcCCCEEEEECC-CCc-EEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence             555777788899999994 343 22222      234456889999998877666543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=7.2e-07  Score=80.88  Aligned_cols=164  Identities=12%  Similarity=0.124  Sum_probs=102.6

Q ss_pred             ccEEEEEECCCCCeEEEEE---------CCCcEEEEeCCCCcceeEE--ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799          109 EAVLSVAFSPDGRQLASGS---------GDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~---------~d~~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  177 (456)
                      ..+....||||+++++...         ..+.+.++|+.++......  ......+....|||||+.||... ++.|.+.
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence            3567788999999988764         3467899999887644322  22344566789999999998875 5678888


Q ss_pred             eCCCCCCccccccCcccce-----------------EEEEecccccCCCCCEEEEEeCC-Cc------------------
Q 012799          178 DPQTGKPSGNPLSGHKKWI-----------------TGISWEPVHLNAPCRRFVSASKD-GD------------------  221 (456)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~~~~~~l~~~~~d-g~------------------  221 (456)
                      +..++........+....+                 .++.|+|     ||++||....| ..                  
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-----Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~  214 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-----DGTRLAYAAINDSRVPIMELPTYTGSIYPTVK  214 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-----TSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC-----CCCeEEEEEecccccceeecccccccccceee
Confidence            8877665432222222212                 4677888     99999876422 22                  


Q ss_pred             ---------------EEEEECCCCeEEEEec------CcCccEEEEEeCCCCeEEEE--eCC---CcEEEEECCCCeEEE
Q 012799          222 ---------------ARIWDVSLRKCVICLS------GHTLAVTCVKWGGDGVIYTG--SQD---CTIKVWETTQGKLIR  275 (456)
Q Consensus       222 ---------------i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~l~~~--~~d---g~i~iwd~~~~~~~~  275 (456)
                                     +.++|+..+.......      .....+..+.|.+++.+++.  ..+   ..+.++|..+++...
T Consensus       215 ~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~  294 (465)
T d1xfda1         215 PYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK  294 (465)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             eeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEE
Confidence                           3444444332221111      11224678899999844333  222   258889999887655


Q ss_pred             Eee
Q 012799          276 ELK  278 (456)
Q Consensus       276 ~~~  278 (456)
                      .+.
T Consensus       295 ~~~  297 (465)
T d1xfda1         295 KHE  297 (465)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.75  E-value=2.2e-05  Score=66.26  Aligned_cols=208  Identities=10%  Similarity=0.040  Sum_probs=135.6

Q ss_pred             EEEEEcCCCC-EEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE
Q 012799          154 LCIAWSADGK-HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC  232 (456)
Q Consensus       154 ~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  232 (456)
                      ....|.+... +..+--..+.|..||.++++...   ......+.++++.+     ++.+++ ++.+ .+..+|..+++.
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~---~~~~~~~~~i~~~~-----dg~l~v-a~~~-gl~~~d~~tg~~   90 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV---HALPFMGSALAKIS-----DSKQLI-ASDD-GLFLRDTATGVL   90 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE---EECSSCEEEEEEEE-----TTEEEE-EETT-EEEEEETTTCCE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE---EECCCCcEEEEEec-----CCCEEE-EEeC-ccEEeeccccee
Confidence            3456776444 44444466789999988876532   12234577788776     665555 4554 588999988875


Q ss_pred             EEEecC----cCccEEEEEeCCCCeEEEEeC-----CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCC
Q 012799          233 VICLSG----HTLAVTCVKWGGDGVIYTGSQ-----DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT  303 (456)
Q Consensus       233 ~~~~~~----~~~~v~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  303 (456)
                      ......    ....+..+.+.++|.+..++.     .+.-.+|.+..++...... .-...+.++++++.          
T Consensus        91 ~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~----------  159 (295)
T d2ghsa1          91 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDG----------  159 (295)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTS----------
T ss_pred             eEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCC----------
Confidence            443321    123588999999996555543     2344566666665544443 22345677787773          


Q ss_pred             CCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCc-------cccccccccEeEEEECCCCCEEE
Q 012799          304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK-------TRMTGHQQLVNHVYFSPDGQWVA  376 (456)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~v~~~~~sp~~~~l~  376 (456)
                                               ...+++.+..+.|+.|++.......       ....+.......+++..+|++.+
T Consensus       160 -------------------------~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWv  214 (295)
T d2ghsa1         160 -------------------------TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN  214 (295)
T ss_dssp             -------------------------CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred             -------------------------ceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEe
Confidence                                     2235666778889999865332111       11223345678899999999888


Q ss_pred             EEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          377 SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       377 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                      +.-..|.|..|| .+|+.+..+......++++
T Consensus       215 a~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~  245 (295)
T d2ghsa1         215 ARWGEGAVDRYD-TDGNHIARYEVPGKQTTCP  245 (295)
T ss_dssp             EEETTTEEEEEC-TTCCEEEEEECSCSBEEEE
T ss_pred             eeeCCCceEEec-CCCcEeeEecCCCCceEEE
Confidence            777788999999 5799999888776778888

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=9.3e-07  Score=80.11  Aligned_cols=233  Identities=13%  Similarity=0.129  Sum_probs=136.9

Q ss_pred             EECCCCCeEEEEECCCcEEEEeCCCCcceeEEecC---CCCEEEEEEcCCCCEEEEEe---------CCCeEEEEeCCCC
Q 012799          115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH---KNWVLCIAWSADGKHLVSGS---------KAGELQCWDPQTG  182 (456)
Q Consensus       115 ~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~---------~dg~i~vwd~~~~  182 (456)
                      .|.+++.++.. ..+|.|.+||+.+++....+...   ...+....|+||+++++...         ..+.+.++|+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            57888876543 46788999999888765444432   34677889999999988764         3567899999988


Q ss_pred             CCccc-cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CcCcc-----------------E
Q 012799          183 KPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLA-----------------V  243 (456)
Q Consensus       183 ~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~-----------------v  243 (456)
                      ..... ........+....|+|     +|+.+|... ++.|.+.+...+..++... +....                 -
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSP-----DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~  175 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGP-----KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCS-----STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             ceeeccCccCCccccceeeecc-----CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcccc
Confidence            75431 1222334455678888     999988876 4678888887766554432 21111                 2


Q ss_pred             EEEEeCCCC-eEEEEe-CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799          244 TCVKWGGDG-VIYTGS-QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (456)
Q Consensus       244 ~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (456)
                      ..+-|+||| .|+... .+..+..+.+....     ......+..+.+...                             
T Consensus       176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~-----~~~~p~~~~~~Yp~~-----------------------------  221 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTVKPYHYPKA-----------------------------  221 (465)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCCEEEECCBT-----------------------------
T ss_pred             ceEEECCCCCeEEEEEecccccceeeccccc-----ccccceeeeeecccc-----------------------------
Confidence            467799999 555543 33444444332100     000111112221110                             


Q ss_pred             hhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc-----cccccccEeEEEECCCCCEEEEEEC-C---CcEEEEeCCCC
Q 012799          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-----MTGHQQLVNHVYFSPDGQWVASASF-D---KSIKLWNGTTG  392 (456)
Q Consensus       322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~v~~~~~sp~~~~l~s~~~-d---g~i~iwd~~~~  392 (456)
                             +..    .....+.++|+.........     .......+..+.|+|++++++.... +   ..+.++|..+|
T Consensus       222 -------G~~----np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg  290 (465)
T d1xfda1         222 -------GSE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG  290 (465)
T ss_dssp             -------TSC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred             -------CCC----CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCC
Confidence                   000    00124667776544332211     1223345788999999987665432 2   26888999998


Q ss_pred             eEEEEEe
Q 012799          393 KFVAVFR  399 (456)
Q Consensus       393 ~~~~~~~  399 (456)
                      +....+.
T Consensus       291 ~~~~~~~  297 (465)
T d1xfda1         291 VCTKKHE  297 (465)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEE
Confidence            7765544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.55  E-value=1.1e-05  Score=67.45  Aligned_cols=111  Identities=12%  Similarity=0.132  Sum_probs=73.6

Q ss_pred             EECCC--CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC-C-----CeEEEEeCCCCCCcc
Q 012799          115 AFSPD--GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-A-----GELQCWDPQTGKPSG  186 (456)
Q Consensus       115 ~~s~~--~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d-----g~i~vwd~~~~~~~~  186 (456)
                      ..+||  |+.+|..+ ++.|.+.|+.+++. ..+..+...+...+|||||+.||.... +     ..|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45788  99888765 45788889987765 456677888999999999999986542 2     247777887776543


Q ss_pred             cccc-----CcccceEEEEecccccCCCCCEEEEEeCC------CcEEEEECCCCeE
Q 012799          187 NPLS-----GHKKWITGISWEPVHLNAPCRRFVSASKD------GDARIWDVSLRKC  232 (456)
Q Consensus       187 ~~~~-----~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~  232 (456)
                      ....     ..........|+|     +++.++.....      ..+...+...+..
T Consensus        83 lt~~~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  134 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDP-----DGNLIISTDAMQPFSSMTCLYRVENDGINF  134 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECT-----TCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred             eeecCCCccCccccccccccCC-----CCCEEEEEEccCCCccceeeeeecCCCcee
Confidence            1111     1123345677888     88888875332      2345555555544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.35  E-value=0.0005  Score=57.57  Aligned_cols=217  Identities=12%  Similarity=0.068  Sum_probs=132.3

Q ss_pred             EEEECCC-CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccccc-
Q 012799          113 SVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS-  190 (456)
Q Consensus       113 ~~~~s~~-~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-  190 (456)
                      +..|++. +++..+=-..+.|..||..+++.. .+. ....+.++++.++|.++++ +.+ .+.++|..+++....... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            4668874 444444446788999998877543 232 4567889999989877665 444 588999998875321111 


Q ss_pred             --CcccceEEEEecccccCCCCCEEEEEeC----CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCc
Q 012799          191 --GHKKWITGISWEPVHLNAPCRRFVSASK----DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCT  262 (456)
Q Consensus       191 --~~~~~v~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~  262 (456)
                        .....+..+.+.|     +|++.++...    .+.-.+|.+..++...... .-.....++|++++  .+++-+..+.
T Consensus        98 ~~~~~~~~nd~~vd~-----~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~  171 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHP-----SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNR  171 (295)
T ss_dssp             TTCTTEEEEEEEECT-----TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             cCCCcccceeeEECC-----CCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccce
Confidence              1123467777777     7876665432    2345667666666544443 23345789999988  4455566788


Q ss_pred             EEEEECCCC------e--EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799          263 IKVWETTQG------K--LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (456)
Q Consensus       263 i~iwd~~~~------~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (456)
                      |..|++...      +  ....+.........+++..+                                    ++..++
T Consensus       172 I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~------------------------------------GnlWva  215 (295)
T d2ghsa1         172 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE------------------------------------GHIWNA  215 (295)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT------------------------------------SCEEEE
T ss_pred             eeEeeecccccccccceEEEeccCcccccccceEEcCC------------------------------------CCEEee
Confidence            988886421      1  11122223344555666555                                    454666


Q ss_pred             EeCCCcEEEEecCCCCCCccccccccccEeEEEEC-CCCCEEEE
Q 012799          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS-PDGQWVAS  377 (456)
Q Consensus       335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~s  377 (456)
                      .-..+.|..||.. ++ ....+.-....+++++|- ||.+.|+.
T Consensus       216 ~~~~g~V~~~dp~-G~-~~~~i~lP~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         216 RWGEGAVDRYDTD-GN-HIARYEVPGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             EETTTEEEEECTT-CC-EEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             eeCCCceEEecCC-Cc-EeeEecCCCCceEEEEEeCCCCCEEEE
Confidence            6677889999943 33 334343334568999995 56555443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.07  E-value=0.0011  Score=57.82  Aligned_cols=117  Identities=15%  Similarity=0.132  Sum_probs=73.5

Q ss_pred             EEEEECCCCCeEEEEECCC-----------cEEEEeCCCCccee--E-EecCCCCEEEEEEcCCCCEEEEEeCC-CeEEE
Q 012799          112 LSVAFSPDGRQLASGSGDT-----------TVRLWDLNTQTPMF--K-CTGHKNWVLCIAWSADGKHLVSGSKA-GELQC  176 (456)
Q Consensus       112 ~~~~~s~~~~~l~~~~~d~-----------~v~vwd~~~~~~~~--~-~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~v  176 (456)
                      .......+|++++.|+.+.           .+.+||..+++-..  . ...+.......++.+++++++.|+.+ ..+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            4455567899998888531           37799998875322  1 22344444566788999999988765 57999


Q ss_pred             EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC------CcEEEEECCCCeEE
Q 012799          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD------GDARIWDVSLRKCV  233 (456)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~  233 (456)
                      ||..+..-...........-...+..+     +++.++.|+.+      ..+.+||..+.+-.
T Consensus       103 yd~~~~~w~~~~~~~~~r~~~~~~~~~-----dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~  160 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVARGYQSSATMS-----DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  160 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECT-----TSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             ecCccCcccccccccccccccceeeec-----CCceeeeccccccccccceeeeecCCCCcee
Confidence            998876532211111111122344444     78888888753      36899999877643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.99  E-value=0.0014  Score=60.40  Aligned_cols=156  Identities=13%  Similarity=0.092  Sum_probs=88.4

Q ss_pred             CeEEEEECCCcEEEEeCCCCcceeEEecCC----CCEEEEEEcCCCCEEEEEe------CCCeEEEEeCCCCCCcccccc
Q 012799          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHK----NWVLCIAWSADGKHLVSGS------KAGELQCWDPQTGKPSGNPLS  190 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~  190 (456)
                      ..++.++.|+.+.-.|.++++.+.......    ..++.--.-.++ .++.+.      .+|.|.-+|.++|+.+.+...
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            457778899999999999999876653211    111111011133 444444      367899999999986542111


Q ss_pred             Ccc--------------------------------cceEEEEecccccCCCCCEEEEEeC----------------CCcE
Q 012799          191 GHK--------------------------------KWITGISWEPVHLNAPCRRFVSASK----------------DGDA  222 (456)
Q Consensus       191 ~~~--------------------------------~~v~~~~~~~~~~~~~~~~l~~~~~----------------dg~i  222 (456)
                      ...                                .....-.|.....+.....+..+..                ...+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv  274 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence            000                                0000111222222224444444433                2457


Q ss_pred             EEEECCCCeEEEEecCcCcc-----------EEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEe
Q 012799          223 RIWDVSLRKCVICLSGHTLA-----------VTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIREL  277 (456)
Q Consensus       223 ~iwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~  277 (456)
                      ...|+++++.+..++.....           ...+......  .++.++.+|.++++|..+|+.+...
T Consensus       275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~  342 (571)
T d2ad6a1         275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeee
Confidence            88899999988777542221           1222232222  4667889999999999999987654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.99  E-value=0.00034  Score=64.56  Aligned_cols=114  Identities=12%  Similarity=0.102  Sum_probs=64.7

Q ss_pred             CCCeEEEEECCCcEEEEeC-CCCcceeEEecCCC----------CE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799          119 DGRQLASGSGDTTVRLWDL-NTQTPMFKCTGHKN----------WV-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (456)
Q Consensus       119 ~~~~l~~~~~d~~v~vwd~-~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  186 (456)
                      +|.++++.+.++.|...|. ++|+.+.++.....          .+ ..+++.  +..++.++.||.+.-.|.++|+...
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence            4554444444678888887 46888877642110          00 123332  3467788899999999999998654


Q ss_pred             ccccCcccceEEEEecccccCCCCCEEEEEe------CCCcEEEEECCCCeEEEEec
Q 012799          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLS  237 (456)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~  237 (456)
                      .........-..+.-.|.-   -+..++.+.      .+|.|+-+|+++++.+..+.
T Consensus       140 ~~~~~~~~~~~~~t~~p~v---~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         140 EVEVCDPKVGSTLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             cccccccccccceeecCeE---eCCeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            2211100000011111111   123444444      36889999999999988653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.93  E-value=0.0011  Score=54.78  Aligned_cols=92  Identities=13%  Similarity=0.156  Sum_probs=63.9

Q ss_pred             EEcCC--CCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-C-----CcEEEEECC
Q 012799          157 AWSAD--GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-D-----GDARIWDVS  228 (456)
Q Consensus       157 ~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~  228 (456)
                      ..+|+  |+.++..+ +|.|.+.|+.+++..  .+..+...+....|+|     ||+.|+.... +     ..|.+++..
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~--~Lt~~~~~~~~p~~SP-----DG~~iaf~~~~~~~~~~~~i~~~~~~   76 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR--KIVSNLGVINNARFFP-----DGRKIAIRVMRGSSLNTADLYFYNGE   76 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE--EEECSSSEEEEEEECT-----TSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE--EEecCCCcccCEEECC-----CCCEEEEEEeeCCCCCceEEEEEEec
Confidence            45688  99888765 457888899988764  3566677788999999     9999987543 2     247788887


Q ss_pred             CCeEEEEecC------cCccEEEEEeCCCC-eEEE
Q 012799          229 LRKCVICLSG------HTLAVTCVKWGGDG-VIYT  256 (456)
Q Consensus       229 ~~~~~~~~~~------~~~~v~~~~~~~~~-~l~~  256 (456)
                      .++.......      .........|+|+| .++.
T Consensus        77 ~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          77 NGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             TTEEEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             CCceEEeeecCCCccCccccccccccCCCCCEEEE
Confidence            7766543221      12345678899999 4444

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.89  E-value=0.00075  Score=62.45  Aligned_cols=116  Identities=16%  Similarity=0.135  Sum_probs=67.6

Q ss_pred             CCCeEEEEECCCcEEEEeC-CCCcceeEEecCCC----------CE-EEEEEcCC----CCEEEEEeCCCeEEEEeCCCC
Q 012799          119 DGRQLASGSGDTTVRLWDL-NTQTPMFKCTGHKN----------WV-LCIAWSAD----GKHLVSGSKAGELQCWDPQTG  182 (456)
Q Consensus       119 ~~~~l~~~~~d~~v~vwd~-~~~~~~~~~~~~~~----------~v-~~~~~~~~----~~~l~s~~~dg~i~vwd~~~~  182 (456)
                      +|.++++.+.++.+...|. ++|+.+.++.....          .+ ..+++.++    +.+++.++.|+.|.-.|.++|
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            4554455555667777776 57887776542110          11 23454432    347888999999999999999


Q ss_pred             CCccccccCcccceEEEEecccccCCCCCEEEEEeC------CCcEEEEECCCCeEEEEec
Q 012799          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLS  237 (456)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~  237 (456)
                      +............-..+.-.|.-   -+..++++..      .|.|+-+|+++++.+..+.
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v---~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYV---VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEE---ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             ceeccccccccccccccccCCcE---ECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            87653221111110111111211   2245566543      4899999999999988753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=0.0044  Score=50.49  Aligned_cols=178  Identities=8%  Similarity=-0.027  Sum_probs=108.5

Q ss_pred             CCcccEEEEEECCCCCeEEEEE-CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCC
Q 012799          106 GHTEAVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGK  183 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~  183 (456)
                      .+...+.+++|.+..+.|.-.. .++.|+..+++.......+......+..+++..-+..|. +-...+.|.+.++....
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            3455688899998777666554 567898888876655555544446789999987555555 44556789999987554


Q ss_pred             CccccccCcccceEEEEecccccCCCCCEEEEEeC-CCc--EEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE-e
Q 012799          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGD--ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG-S  258 (456)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~  258 (456)
                      ... ...........++..|     ...+++.... .+.  |.--++............-.....+++++.+ .|+.+ .
T Consensus       113 ~~~-l~~~~l~~p~~l~vdp-----~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~  186 (263)
T d1npea_         113 RRV-LFDTGLVNPRGIVTDP-----VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA  186 (263)
T ss_dssp             CEE-EECSSCSSEEEEEEET-----TTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred             EEE-EecccccCCcEEEEec-----ccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC
Confidence            322 2333335678888887     4445554332 223  4444554433333333334566889998765 56554 4


Q ss_pred             CCCcEEEEECCCCeEEEEeecCCcceEEEEec
Q 012799          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALS  290 (456)
Q Consensus       259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  290 (456)
                      ..+.|...|+........+.+... ..++++.
T Consensus       187 ~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~  217 (263)
T d1npea_         187 GTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY  217 (263)
T ss_dssp             TTTEEEEEETTEEEEEEEEECCCS-EEEEEEE
T ss_pred             CCCEEEEEECCCCCeEEEECCCCC-cEEEEEE
Confidence            577899999875544333433222 2355554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.83  E-value=0.00081  Score=61.86  Aligned_cols=111  Identities=15%  Similarity=0.103  Sum_probs=65.3

Q ss_pred             eEEEEECCCcEEEEeCCCCcceeEEecCCC----------CE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 012799          122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKN----------WV-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS  190 (456)
Q Consensus       122 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  190 (456)
                      .|..++.++.|.-.|.++|+.+.++.....          .+ ..++.  .+..++.+..|+.+.-.|..+|+.+.....
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~~  145 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQT  145 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccCc
Confidence            456667788999999999998887642110          00 11111  245688888899999999999886542211


Q ss_pred             CcccceEEEEecccccCCCCCEEEEEeC------CCcEEEEECCCCeEEEEec
Q 012799          191 GHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLS  237 (456)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~  237 (456)
                      .....-..+.-.|.-   ....++.+..      .|.|.-+|.++++.+..+.
T Consensus       146 ~~~~~~~~~~~~p~v---~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         146 TDPAKPYSITGAPRV---VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             SCTTSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             cCcccceeeeeeeee---ecCcccccccceeccccceEEEEECCCceEEeeee
Confidence            111110111111110   1224444432      3679999999999988764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.83  E-value=0.0044  Score=57.18  Aligned_cols=158  Identities=14%  Similarity=0.117  Sum_probs=90.4

Q ss_pred             CeEEEEECCCcEEEEeCCCCcceeEEecCCCCE-EEEEEcC--CCCEEEEEeC------CCeEEEEeCCCCCCccccccC
Q 012799          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV-LCIAWSA--DGKHLVSGSK------AGELQCWDPQTGKPSGNPLSG  191 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~  191 (456)
                      .+++.++.|+.|.-.|.++++.+..+....... ..+.-.|  -+..++.+..      .|.|+-+|.++|+.+.+....
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~  201 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence            468888899999999999999888764211000 0111111  2334555543      488999999999875432110


Q ss_pred             c--------------------------------ccceEEEEecccccCCCCCEEEEEeC----------------CCcEE
Q 012799          192 H--------------------------------KKWITGISWEPVHLNAPCRRFVSASK----------------DGDAR  223 (456)
Q Consensus       192 ~--------------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~----------------dg~i~  223 (456)
                      .                                ...-..-.|.+.........+..+..                ...+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv  281 (596)
T d1w6sa_         202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (596)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence            0                                00000111222222224445544432                23477


Q ss_pred             EEECCCCeEEEEecCcC---------ccEEEEEe-CCCC----eEEEEeCCCcEEEEECCCCeEEEEee
Q 012799          224 IWDVSLRKCVICLSGHT---------LAVTCVKW-GGDG----VIYTGSQDCTIKVWETTQGKLIRELK  278 (456)
Q Consensus       224 iwd~~~~~~~~~~~~~~---------~~v~~~~~-~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~  278 (456)
                      ..|+++++.+..++...         .....+.. ..+|    .++....+|.+.++|..+|+++...+
T Consensus       282 AlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~  350 (596)
T d1w6sa_         282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (596)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecc
Confidence            88999999887664321         11222221 2233    57778889999999999999886543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.81  E-value=0.0022  Score=54.94  Aligned_cols=101  Identities=11%  Similarity=0.009  Sum_probs=64.4

Q ss_pred             EEEEcC---CCCEEEEEe-CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC----------
Q 012799          155 CIAWSA---DGKHLVSGS-KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG----------  220 (456)
Q Consensus       155 ~~~~~~---~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg----------  220 (456)
                      .+++..   ||++|++.. .+..|.+.|+++.+............+..++..+.   ++..+++.++.+.          
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~---p~T~YV~~~~e~~vP~pndg~~l  165 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKW---PRSNYVFCNGEDETPLVNDGTNM  165 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCS---SBCSEEEEEECSCEESSCSSSST
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccC---CCeEEEEccCccccccCCCCccc
Confidence            455543   788888776 47789999999887644222333444555554331   1445777666532          


Q ss_pred             --------cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC
Q 012799          221 --------DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ  259 (456)
Q Consensus       221 --------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~  259 (456)
                              .+.++|..+.+....+.- ......+.++++| ++++.+.
T Consensus       166 ~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         166 EDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             TCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEES
T ss_pred             cchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEec
Confidence                    367789988887776643 3345678899999 6666554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=0.0087  Score=48.65  Aligned_cols=233  Identities=10%  Similarity=-0.013  Sum_probs=133.4

Q ss_pred             CeEEEEECCCcEEEEeCCCCcc-----eeEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCccccccCccc
Q 012799          121 RQLASGSGDTTVRLWDLNTQTP-----MFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGKPSGNPLSGHKK  194 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~  194 (456)
                      .+|+.+. .+.|+-.+++....     ...+..+...+..++|.+..+.|... ..++.|...+++.+.... .......
T Consensus         2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~-v~~~~~~   79 (263)
T d1npea_           2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-IIRQDLG   79 (263)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-EECTTCC
T ss_pred             CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE-EEEeccc
Confidence            3444443 24677677654321     12233445568889999877766655 456789888887654432 2333334


Q ss_pred             ceEEEEecccccCCCCCEE-EEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCC---CcEEEEECC
Q 012799          195 WITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD---CTIKVWETT  269 (456)
Q Consensus       195 ~v~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---g~i~iwd~~  269 (456)
                      .+.++++..     -+..| ++-...+.|.+.++........+.........++++|.+ .++.....   +.|.--++.
T Consensus        80 ~p~~iAvD~-----~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d  154 (263)
T d1npea_          80 SPEGIALDH-----LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (263)
T ss_dssp             CEEEEEEET-----TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             cccEEEEec-----cCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC
Confidence            577788765     33444 455567789999987665444444444678899998865 55543322   235445665


Q ss_pred             CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE-EEEeCCCcEEEEecCC
Q 012799          270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAV  348 (456)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~  348 (456)
                      ...........-.....+++.+.                                    .+.| ++-...+.|...|+..
T Consensus       155 G~~~~~i~~~~~~~P~glaiD~~------------------------------------~~~lYw~d~~~~~I~~~~~~g  198 (263)
T d1npea_         155 GTNRRILAQDNLGLPNGLTFDAF------------------------------------SSQLCWVDAGTHRAECLNPAQ  198 (263)
T ss_dssp             SCCCEEEECTTCSCEEEEEEETT------------------------------------TTEEEEEETTTTEEEEEETTE
T ss_pred             CCCceeeeeecccccceEEEeec------------------------------------CcEEEEEeCCCCEEEEEECCC
Confidence            43333333323344567777655                                    2334 4445667888888644


Q ss_pred             CCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799          349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (456)
Q Consensus       349 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  399 (456)
                      .. ......+.. ....+++. ++.+..+-...+.|...|..+++.+..+.
T Consensus       199 ~~-~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         199 PG-RRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EE-EEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CC-eEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            32 222222222 24567775 33334444466889999998888776654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.68  E-value=0.0086  Score=54.77  Aligned_cols=159  Identities=15%  Similarity=0.135  Sum_probs=88.3

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcceeEEecCCC-CEEEEEEcC--CCCEEEEEeC------CCeEEEEeCCCCCCcccccc
Q 012799          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN-WVLCIAWSA--DGKHLVSGSK------AGELQCWDPQTGKPSGNPLS  190 (456)
Q Consensus       120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~  190 (456)
                      +..++.+..|+.+.-.|..+++.+........ .-..+.-.|  .+..++.+..      .|.|.-+|.++|+.+.+...
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            34677888899999999999998877653211 111111111  1223444322      36799999999986543221


Q ss_pred             Cccc-------------------------ceEEEEecccccCCCCCEEEEEeC-------------------CCcEEEEE
Q 012799          191 GHKK-------------------------WITGISWEPVHLNAPCRRFVSASK-------------------DGDARIWD  226 (456)
Q Consensus       191 ~~~~-------------------------~v~~~~~~~~~~~~~~~~l~~~~~-------------------dg~i~iwd  226 (456)
                      ....                         ....-.|...........++.+..                   ...|.-.|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld  276 (560)
T d1kv9a2         197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (560)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence            1000                         011112322222224444443221                   23577778


Q ss_pred             CCCCeEEEEecCcCcc-----------EEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEee
Q 012799          227 VSLRKCVICLSGHTLA-----------VTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELK  278 (456)
Q Consensus       227 ~~~~~~~~~~~~~~~~-----------v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~  278 (456)
                      +++++....++.....           ...+......  .++.+..+|.+.++|..+++++....
T Consensus       277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~  341 (560)
T d1kv9a2         277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK  341 (560)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccc
Confidence            8899887666432221           1223332222  56678889999999999999876654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.015  Score=47.40  Aligned_cols=244  Identities=10%  Similarity=-0.013  Sum_probs=139.6

Q ss_pred             EEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCC---ccccccCcccceEE
Q 012799          123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKP---SGNPLSGHKKWITG  198 (456)
Q Consensus       123 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~  198 (456)
                      |+.+. ...|+-.++++......+ .....+..++|.+..+.|.-.. .++.|.-.+++....   ...........+.+
T Consensus         4 Ll~s~-~~~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1           4 LFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (266)
T ss_dssp             EEEEC-BSSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEC-CCeEEEEECCCCcceeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence            44443 335888898865544333 4556788999998777776654 456677776653221   11112222344556


Q ss_pred             EEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC-CeEEEEe--CCCcEEEEECCCCeEEE
Q 012799          199 ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS--QDCTIKVWETTQGKLIR  275 (456)
Q Consensus       199 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~--~dg~i~iwd~~~~~~~~  275 (456)
                      +++.+.    .++...+-...+.|.+.++..................++++|. |.++...  ..+.|.-.++.......
T Consensus        82 lAvD~~----~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~  157 (266)
T d1ijqa1          82 LAVDWI----HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  157 (266)
T ss_dssp             EEEETT----TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             EEEeec----cceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec
Confidence            776652    3344445456678999999877655555555667889999884 4555443  34567777776544433


Q ss_pred             EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc
Q 012799          276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR  355 (456)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  355 (456)
                      .....-.....+++.+..                                   +...++-...+.|...++.........
T Consensus       158 l~~~~~~~p~gl~iD~~~-----------------------------------~~lYw~d~~~~~I~~~~~dG~~~~~~~  202 (266)
T d1ijqa1         158 LVTENIQWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGNRKTIL  202 (266)
T ss_dssp             EECSSCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             ccccccceeeEEEeeccc-----------------------------------cEEEEecCCcCEEEEEECCCCCEEEEE
Confidence            333333456778877652                                   223445566778888886543322111


Q ss_pred             -cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          356 -MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       356 -~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                       ..........+++. ++.+..+-..++.|...+..+|+....+........++
T Consensus       203 ~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~i  255 (266)
T d1ijqa1         203 EDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDM  255 (266)
T ss_dssp             ECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCE
T ss_pred             eCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEEcCCCCceEE
Confidence             11222345667775 33334444467888888888887666665444333333

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.51  E-value=0.0028  Score=58.36  Aligned_cols=111  Identities=16%  Similarity=0.117  Sum_probs=65.3

Q ss_pred             CCCeEEEEECCCcEEEEeCCCCcceeEEecCC----------CCE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK----------NWV-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (456)
Q Consensus       119 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~----------~~v-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  187 (456)
                      +| .|+.++.++.|.-+|.++|+.+.++....          ..+ ..+...  +..++.++.|+.+.-.|.++|+.+..
T Consensus        77 ~g-~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~  153 (573)
T d1kb0a2          77 DG-IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWH  153 (573)
T ss_dssp             TT-EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CC-EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceec
Confidence            44 45666778899999999999887764211          011 112222  33577778889998889998886532


Q ss_pred             ccc-Ccc-cceEEEEecccccCCCCCEEEEEeC------CCcEEEEECCCCeEEEEe
Q 012799          188 PLS-GHK-KWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICL  236 (456)
Q Consensus       188 ~~~-~~~-~~v~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~  236 (456)
                      ... .+. ..+ .+.-.|.-   -+..+++++.      .|.|+.+|.++++.+..+
T Consensus       154 ~~~~~~~~~~~-~~~~~p~v---~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         154 QNTFEGQKGSL-TITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             EETTTTCCSSC-BCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ccCccCCcceE-EeecceEE---EeccEEEeeccccccccceEEEEecCCccceeee
Confidence            211 111 111 11111111   1234555432      468999999999998875

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.43  E-value=0.03  Score=51.25  Aligned_cols=31  Identities=16%  Similarity=0.139  Sum_probs=27.6

Q ss_pred             CCCEEEEEECCCcEEEEeCCCCeEEEEEecc
Q 012799          371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (456)
Q Consensus       371 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  401 (456)
                      .|.+|++|+.||.++.+|.++|+.+..+...
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence            5778889999999999999999999988743

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.38  E-value=0.023  Score=45.91  Aligned_cols=232  Identities=11%  Similarity=0.113  Sum_probs=143.6

Q ss_pred             CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCC
Q 012799          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAP  209 (456)
Q Consensus       130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  209 (456)
                      ..|.|.|+.+.....+-.   -...+.-.+|..+.||.-+ ..++.++|+++.+.+....  ....|.--.|-      +
T Consensus        45 ~~VvIidl~n~~~~~Rrp---i~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~--~~e~VvfWkWi------s  112 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWI------S  112 (327)
T ss_dssp             EEEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEES------S
T ss_pred             ceEEEEECCCCCcceecc---cchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE--cCCCcEEEEec------C
Confidence            478899997655433221   1233456778888888766 4589999999887654221  23345455554      3


Q ss_pred             CCEEEEEeCCCcEEEEECCC-CeEEEEecCcC----ccEEEEEeCCCC-eE-EEE--eC----CCcEEEEECCCCeEEEE
Q 012799          210 CRRFVSASKDGDARIWDVSL-RKCVICLSGHT----LAVTCVKWGGDG-VI-YTG--SQ----DCTIKVWETTQGKLIRE  276 (456)
Q Consensus       210 ~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~----~~v~~~~~~~~~-~l-~~~--~~----dg~i~iwd~~~~~~~~~  276 (456)
                      .+.|+..+. ..|+-|+++. ..+...+..|.    ..|.....+++. ++ ++|  ..    .|.+.+|..+. +.-+.
T Consensus       113 ~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~  190 (327)
T d1utca2         113 LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQP  190 (327)
T ss_dssp             SSEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEE
T ss_pred             CCEEEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCcc
Confidence            346665554 5799999954 24555554443    457777778877 33 332  22    36788999875 45667


Q ss_pred             eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE---eCCCcEEEEecCCCCC--
Q 012799          277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG---SDDFTMFLWEPAVSKQ--  351 (456)
Q Consensus       277 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~--  351 (456)
                      +.+|......+.+..+..                                 +...++.+   ...+.+.+.++.....  
T Consensus       191 ieGhaa~F~~~~~~g~~~---------------------------------~~~lf~fa~r~~~~~kLhIiEig~~~~g~  237 (327)
T d1utca2         191 IEGHAASFAQFKMEGNAE---------------------------------ESTLFCFAVRGQAGGKLHIIEVGTPPTGN  237 (327)
T ss_dssp             ECCSEEEEEEECCTTCSS---------------------------------CEEEEEEEEEETTEEEEEEEECSCCCTTC
T ss_pred             ccceeeeeEEEEcCCCCC---------------------------------CceEEEEEECCCCCcEEEEEEcCCCccCC
Confidence            777877666665543310                                 01112222   2236788888655321  


Q ss_pred             -Cc-----ccc---ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799          352 -PK-----TRM---TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (456)
Q Consensus       352 -~~-----~~~---~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  408 (456)
                       +.     ..+   ..-.+-.-++..|+.-..+..-+.-|.+++||++++.++..-+-..++|..-
T Consensus       238 ~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~  303 (327)
T d1utca2         238 QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT  303 (327)
T ss_dssp             CCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEe
Confidence             11     011   1123445678888877788889999999999999999998877666666644

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.32  E-value=0.029  Score=51.47  Aligned_cols=114  Identities=11%  Similarity=0.011  Sum_probs=64.1

Q ss_pred             CeEEEEECCCcEEEEeCCCCcceeEEecCC--------CCE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccC
Q 012799          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHK--------NWV-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG  191 (456)
Q Consensus       121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~--------~~v-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  191 (456)
                      ..|.+++.++.|.-.|..+|+.+.++....        ..+ ..++.  .+..++.++.|+.+.-.|.++|+.+......
T Consensus        69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~--~~~~i~~~t~~~~l~alda~tG~~~W~~~~~  146 (582)
T d1flga_          69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE--eCCceEEecCCCeEEEecccccceeeeeccc
Confidence            456677788999999999999988764211        011 11222  2456778899999999999999865322111


Q ss_pred             cccceEEEEeccccc--CCCCCEEEEE-------eCCCcEEEEECCCCeEEEEe
Q 012799          192 HKKWITGISWEPVHL--NAPCRRFVSA-------SKDGDARIWDVSLRKCVICL  236 (456)
Q Consensus       192 ~~~~v~~~~~~~~~~--~~~~~~l~~~-------~~dg~i~iwd~~~~~~~~~~  236 (456)
                      ...........|...  ...+..++..       +..+.|.-+|.++++.+..+
T Consensus       147 ~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~  200 (582)
T d1flga_         147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred             CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEE
Confidence            110000000011000  0012333332       23467888999999887765

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.09  E-value=0.1  Score=47.68  Aligned_cols=61  Identities=15%  Similarity=0.091  Sum_probs=40.3

Q ss_pred             CcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecc
Q 012799          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (456)
Q Consensus       339 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  401 (456)
                      |.+.-+|+.+++...+...++  ++..-.++..|.++++|+.||.++.+|.++|+.+..++..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~--p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~  526 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CeEEEEcCCCCcEEeecCCCC--CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECC
Confidence            566777766655433322221  1221122346778889999999999999999999988743

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.85  E-value=0.11  Score=44.28  Aligned_cols=170  Identities=9%  Similarity=0.041  Sum_probs=96.7

Q ss_pred             CCCEEEEEe-CCCcEEEEECCCCeEEEEecC-cCccEEEEEeCCCC---eEEEEeCCC------------------cEEE
Q 012799          209 PCRRFVSAS-KDGDARIWDVSLRKCVICLSG-HTLAVTCVKWGGDG---VIYTGSQDC------------------TIKV  265 (456)
Q Consensus       209 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~---~l~~~~~dg------------------~i~i  265 (456)
                      ||+++++.. .++.|.+.|+.+.++...+.- ....+..+...+++   +++.++.+.                  .+..
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            677877766 578999999999988664432 33455666655433   666666532                  3677


Q ss_pred             EECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe---------
Q 012799          266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS---------  336 (456)
Q Consensus       266 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------  336 (456)
                      +|..+.+....+... .....+.+++++.+................ .           .....++++...         
T Consensus       178 ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e-~-----------ta~e~D~i~V~n~~rie~av~  244 (459)
T d1fwxa2         178 VDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPE-M-----------TAAEMDHIVVFNIAEIEKAIA  244 (459)
T ss_dssp             EETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHH-H-----------TCCSEEEEEEEEHHHHHHHHH
T ss_pred             EecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhh-c-----------ccccceEEEEechHHhHHhhh
Confidence            899988887776543 345677888887766554333222111000 0           000011111110         


Q ss_pred             -----CCCcEEEEecCCCC-CCccccccccccEeEEEECCCCCEEEE-EECCCcEEEEeCCC
Q 012799          337 -----DDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTT  391 (456)
Q Consensus       337 -----~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s-~~~dg~i~iwd~~~  391 (456)
                           .-+.+.+-|.+... .....+..-......+.++|||+++++ +..+.++.|+|++.
T Consensus       245 ~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         245 AGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             HTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             cCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                 01335666755321 112112222333567899999999665 55788999999864

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.63  E-value=0.19  Score=43.87  Aligned_cols=105  Identities=21%  Similarity=0.290  Sum_probs=64.3

Q ss_pred             CCcccEEEEEECCCCCeEEEEE-CC----CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC---------
Q 012799          106 GHTEAVLSVAFSPDGRQLASGS-GD----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---------  171 (456)
Q Consensus       106 ~h~~~V~~~~~s~~~~~l~~~~-~d----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---------  171 (456)
                      ++.-.+...++|||++++|.+- .+    ..++++|+.+++.+..... ......++|.+|++.|+....+         
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccc
Confidence            4555566788999999988542 22    3799999999986642211 1122568899999988765432         


Q ss_pred             -------CeEEEEeCCCCCCcccc-ccCc--ccceEEEEecccccCCCCCEEEEE
Q 012799          172 -------GELQCWDPQTGKPSGNP-LSGH--KKWITGISWEPVHLNAPCRRFVSA  216 (456)
Q Consensus       172 -------g~i~vwd~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~~~~~~l~~~  216 (456)
                             ..|..|.+.+....... ....  ...+..+..++     ++++++..
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-----d~~~l~i~  250 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-----DGRYVLLS  250 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-----TSCEEEEE
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC-----CcceeeEE
Confidence                   25777777665432211 1211  22344555555     77777643

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=96.59  E-value=0.13  Score=41.62  Aligned_cols=125  Identities=15%  Similarity=0.143  Sum_probs=59.3

Q ss_pred             cEEEEeCCCC-cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCC
Q 012799          131 TVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAP  209 (456)
Q Consensus       131 ~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  209 (456)
                      +|+.|--... ............|..|+-.  ..+.+.-. ||.|..|-......+.. .......+..+.--       
T Consensus         5 sv~~WG~~~~~~~~~~~~~~~~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~-~~~~~~~v~~v~~G-------   73 (273)
T d1jtdb_           5 SVVAWGGNNDWGEATVPAEAQSGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAG-------   73 (273)
T ss_dssp             EEEEESSCCSSSTTCCCGGGSSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSCCCEEEEC-------
T ss_pred             EEEEECCCCCCCceeccccCCCCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceee-eecccccceEEecC-------
Confidence            5777743221 1111112234567777763  22333344 89999997765544431 22223345555432       


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECC
Q 012799          210 CRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT  269 (456)
Q Consensus       210 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~  269 (456)
                      ..+.+. -.||.+..|.....-...........+..++.... ..+ .-.|+.+..|...
T Consensus        74 ~~~~~a-l~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~-~~~-~~~dg~v~~~g~~  130 (273)
T d1jtdb_          74 NYHSLA-LKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW-ASY-ALKDGKVIAWGDD  130 (273)
T ss_dssp             SSEEEE-EETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETT-EEE-EEETTEEEEEECC
T ss_pred             CCceee-eeeeeeeccCCCcceeeccccccccceeEEeeecc-ccc-ccccccceecccC
Confidence            223332 34899999976432111111111223344443333 222 2247888888644

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.43  E-value=0.2  Score=42.71  Aligned_cols=73  Identities=14%  Similarity=0.205  Sum_probs=49.1

Q ss_pred             EEEEEECCCCCeEEEEECC-CcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCC
Q 012799          111 VLSVAFSPDGRQLASGSGD-TTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKA------GELQCWDPQTG  182 (456)
Q Consensus       111 V~~~~~s~~~~~l~~~~~d-~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~  182 (456)
                      ..+.++.++|++++.|+.+ ..+.+||..+..-...-. .....-...+..+||++++.|+.+      ..+.+||..++
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            3456788999999988755 589999987654322111 112223456677899999988753      35899998876


Q ss_pred             C
Q 012799          183 K  183 (456)
Q Consensus       183 ~  183 (456)
                      +
T Consensus       158 ~  158 (387)
T d1k3ia3         158 T  158 (387)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.19  Score=40.49  Aligned_cols=160  Identities=8%  Similarity=-0.064  Sum_probs=96.5

Q ss_pred             CcccEEEEEECCCCCeEEEEE-CCCcEEEEeCCCCc----ceeEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCC
Q 012799          107 HTEAVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQ  180 (456)
Q Consensus       107 h~~~V~~~~~s~~~~~l~~~~-~d~~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~  180 (456)
                      ....+.+++|++..+.|.-.. .++.|.-.+++...    ....+......+..+++.+.+..|..+ ...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            445678999998877666554 45667766665321    122233334567788988755555544 556789999987


Q ss_pred             CCCCccccccCcccceEEEEecccccCCCCCEEEEEe--CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE
Q 012799          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~  257 (456)
                      ...... ...........++..|     ...++....  ..+.|.-.++............-.....+++++.+ .|+.+
T Consensus       108 g~~~~~-~~~~~~~~P~~l~vd~-----~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~  181 (266)
T d1ijqa1         108 GVKRKT-LFRENGSKPRAIVVDP-----VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV  181 (266)
T ss_dssp             SSSEEE-EEECTTCCEEEEEEET-----TTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             CceEEE-EEcCCCCCcceEEEEc-----ccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEe
Confidence            654322 3344445677888877     334444433  33456666665444333333334567889998765 55554


Q ss_pred             -eCCCcEEEEECCCCe
Q 012799          258 -SQDCTIKVWETTQGK  272 (456)
Q Consensus       258 -~~dg~i~iwd~~~~~  272 (456)
                       ...+.|...|+....
T Consensus       182 d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         182 DSKLHSISSIDVNGGN  197 (266)
T ss_dssp             ETTTTEEEEEETTSCS
T ss_pred             cCCcCEEEEEECCCCC
Confidence             556788888886543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.69  E-value=0.39  Score=38.65  Aligned_cols=148  Identities=12%  Similarity=0.223  Sum_probs=92.1

Q ss_pred             EEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCc
Q 012799          113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGH  192 (456)
Q Consensus       113 ~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  192 (456)
                      +.-.+|..+.||.-+ ..++.+||+++.+.++.+. ....|.--.|-. .+.|+..+. ..|.-|+++......+.+..|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis-~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWIS-LNTVALVTD-NAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESS-SSEEEEECS-SEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEecC-CCEEEEEcC-CceEEEcccCCCCchhhhhhc
Confidence            345678888888776 4589999999999888877 444676677764 445665554 479999996543322233333


Q ss_pred             c----cceEEEEecccccCCCCCEEEEEe-------CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC---eEEE-E
Q 012799          193 K----KWITGISWEPVHLNAPCRRFVSAS-------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYT-G  257 (456)
Q Consensus       193 ~----~~v~~~~~~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~-~  257 (456)
                      .    ..|..-..++     +.+.++..|       -.|.+.+|..+.+. -+.+.+|.+....+....+.   .+++ +
T Consensus       143 ~~L~~~QIInY~~d~-----~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa  216 (327)
T d1utca2         143 SSLAGCQIINYRTDA-----KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFA  216 (327)
T ss_dssp             GGGTTCEEEEEEECT-----TSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEE
T ss_pred             ccccCceEEEEEECC-----CCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEE
Confidence            2    2344444444     666665432       24678999987654 45567787766666655432   2332 2


Q ss_pred             ---eCCCcEEEEECCC
Q 012799          258 ---SQDCTIKVWETTQ  270 (456)
Q Consensus       258 ---~~dg~i~iwd~~~  270 (456)
                         ...+.+++.++..
T Consensus       217 ~r~~~~~kLhIiEig~  232 (327)
T d1utca2         217 VRGQAGGKLHIIEVGT  232 (327)
T ss_dssp             EEETTEEEEEEEECSC
T ss_pred             ECCCCCcEEEEEEcCC
Confidence               2235788887754

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=94.79  E-value=0.76  Score=36.83  Aligned_cols=87  Identities=10%  Similarity=0.126  Sum_probs=43.3

Q ss_pred             eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC
Q 012799          173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG  252 (456)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  252 (456)
                      +|..|--................|..++--.       .+.++-. ||.|..|-.+....+-.-......+..++.....
T Consensus         5 sv~~WG~~~~~~~~~~~~~~~~~i~~va~G~-------~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~   76 (273)
T d1jtdb_           5 SVVAWGGNNDWGEATVPAEAQSGVDAIAGGY-------FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH   76 (273)
T ss_dssp             EEEEESSCCSSSTTCCCGGGSSSEEEEEECS-------SEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSE
T ss_pred             EEEEECCCCCCCceeccccCCCCcEEEEccC-------CEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCc
Confidence            5677753322111112223345577776432       3444444 8999999765432211111223345555543332


Q ss_pred             eEEEEeCCCcEEEEECC
Q 012799          253 VIYTGSQDCTIKVWETT  269 (456)
Q Consensus       253 ~l~~~~~dg~i~iwd~~  269 (456)
                      .++ - .||.+..|...
T Consensus        77 ~~a-l-~dg~v~~wG~~   91 (273)
T d1jtdb_          77 SLA-L-KDGEVIAWGGN   91 (273)
T ss_dssp             EEE-E-ETTEEEEEECC
T ss_pred             eee-e-eeeeeeccCCC
Confidence            222 2 48899999754

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.30  E-value=1.3  Score=37.32  Aligned_cols=176  Identities=11%  Similarity=0.055  Sum_probs=96.1

Q ss_pred             ccEEEEEECCCCCeEEEEECCCcEEEEeCCC---------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNT---------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (456)
Q Consensus       109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  179 (456)
                      ....-++.++...+++.|+.++ ++|..+..         ..........-..|..++|+.+  .|+.. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            3456788998888888888775 66765321         1111111112236889999754  45554 4556777776


Q ss_pred             CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-----cCccEEEEEeCCCC-e
Q 012799          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-----HTLAVTCVKWGGDG-V  253 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~  253 (456)
                      ..-.... ....-...+.++.+.|       ..++....+|.+.++++..++......+     -...+.+++|++.| .
T Consensus       113 ~~l~~~~-~~~~~~~~~~~~~~~p-------~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq  184 (381)
T d1xipa_         113 EELSEFR-TVTSFEKPVFQLKNVN-------NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQ  184 (381)
T ss_dssp             SSTTCEE-EEEECSSCEEEEEECS-------SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEE
T ss_pred             ecccccc-ccccccccccceecCC-------ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEE
Confidence            6533221 1222345677777766       4677788889999999987754322211     13456777777777 5


Q ss_pred             EEEEeCCCcEEEE-ECCCCeEEEEeecCCcceEEEEecCcceeee
Q 012799          254 IYTGSQDCTIKVW-ETTQGKLIRELKGHGHWVNSLALSTEYALRT  297 (456)
Q Consensus       254 l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  297 (456)
                      ++++..++ ..+- ++.....+..-......+.++.|-.++.+..
T Consensus       185 ~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~v  228 (381)
T d1xipa_         185 SFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA  228 (381)
T ss_dssp             EEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred             EEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEE
Confidence            55543221 1110 1110000000011234577888887765543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.08  E-value=1.3  Score=36.74  Aligned_cols=199  Identities=16%  Similarity=0.198  Sum_probs=108.1

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEeccc-ccCCCCCEEEEEeC--C--CcEEEEECCC-CeEE
Q 012799          160 ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV-HLNAPCRRFVSASK--D--GDARIWDVSL-RKCV  233 (456)
Q Consensus       160 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~l~~~~~--d--g~i~iwd~~~-~~~~  233 (456)
                      |+..+++....++-|.+||++ |+.+....   .+.+..+..-.. .+......+++++.  +  .+|.+|.+.. ...+
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l  113 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence            345677777777779999985 66554222   234444443210 01112223555553  2  3577887742 2233


Q ss_pred             EEecCc-------CccEEEEEe--CCC-C--eEEEEeCCCcEEEEECC---CC----eEEEEeecCCcceEEEEecCcce
Q 012799          234 ICLSGH-------TLAVTCVKW--GGD-G--VIYTGSQDCTIKVWETT---QG----KLIRELKGHGHWVNSLALSTEYA  294 (456)
Q Consensus       234 ~~~~~~-------~~~v~~~~~--~~~-~--~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~i~~~~~~~~~~  294 (456)
                      ..+...       ...+..+|+  ++. +  .+++...+|.+..|.+.   .+    +.++.+. ....+..+.+...  
T Consensus       114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde--  190 (353)
T d1h6la_         114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDE--  190 (353)
T ss_dssp             EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETT--
T ss_pred             ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCC--
Confidence            333221       123455555  554 4  56777888998888663   22    2344444 2345666666655  


Q ss_pred             eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc----ccc--cccccEeEEEE
Q 012799          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT----RMT--GHQQLVNHVYF  368 (456)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~--~~~~~v~~~~~  368 (456)
                                                        ...|+.+-++.-+..++.........    ...  .....+..++.
T Consensus       191 ----------------------------------~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlai  236 (353)
T d1h6la_         191 ----------------------------------YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTI  236 (353)
T ss_dssp             ----------------------------------TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEE
T ss_pred             ----------------------------------CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEE
Confidence                                              45688888877776666442221111    111  12345666664


Q ss_pred             C--CC--CCEEEEEECCCcEEEEeCCC-CeEEEEEe
Q 012799          369 S--PD--GQWVASASFDKSIKLWNGTT-GKFVAVFR  399 (456)
Q Consensus       369 s--p~--~~~l~s~~~dg~i~iwd~~~-~~~~~~~~  399 (456)
                      -  ++  |-+|++.-.+++..+||... .+.+..|.
T Consensus       237 y~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         237 YYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            3  23  33455555678999999876 46666664

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.77  E-value=1.5  Score=36.36  Aligned_cols=144  Identities=9%  Similarity=0.144  Sum_probs=84.2

Q ss_pred             CCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC------CCCEEEEEe-CC---CeEEEEeCCCCCCccc
Q 012799          118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA------DGKHLVSGS-KA---GELQCWDPQTGKPSGN  187 (456)
Q Consensus       118 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~s~~-~d---g~i~vwd~~~~~~~~~  187 (456)
                      |+..+++....++-|++||++ |+.+..+.  .+.+..+..-.      ...-++.++ ++   .+|.+|.+........
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            345566666677779999986 77676654  34556555432      222344444 22   3688887753221110


Q ss_pred             cc-------cCcccceEEEEe--cccccCCCCC-EEEEEeCCCcEEEEECC---CC----eEEEEecCcCccEEEEEeCC
Q 012799          188 PL-------SGHKKWITGISW--EPVHLNAPCR-RFVSASKDGDARIWDVS---LR----KCVICLSGHTLAVTCVKWGG  250 (456)
Q Consensus       188 ~~-------~~~~~~v~~~~~--~~~~~~~~~~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~v~~~~~~~  250 (456)
                      .+       ......+..+|+  ++.    ++. ++++...+|.+..|.+.   .+    +.++.+. -...+..|.+++
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~----~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDd  189 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQK----TGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADD  189 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTT----TCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEET
T ss_pred             cccccccccccccCcceEEEEEecCC----CCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeC
Confidence            11       111224667776  331    343 56667778999888763   22    3344443 345678888888


Q ss_pred             CC-eEEEEeCCCcEEEEECC
Q 012799          251 DG-VIYTGSQDCTIKVWETT  269 (456)
Q Consensus       251 ~~-~l~~~~~dg~i~iwd~~  269 (456)
                      +. .|+.+-.+.-+..++..
T Consensus       190 e~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         190 EYGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             TTTEEEEEETTTEEEEEESS
T ss_pred             CCCcEEEecCccceEEEEec
Confidence            66 89988888777777654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=1.8  Score=34.54  Aligned_cols=24  Identities=17%  Similarity=0.414  Sum_probs=17.2

Q ss_pred             CCCEEEEEECCC-----cEEEEeCCCCeE
Q 012799          371 DGQWVASASFDK-----SIKLWNGTTGKF  394 (456)
Q Consensus       371 ~~~~l~s~~~dg-----~i~iwd~~~~~~  394 (456)
                      ++++++.|+.++     .+.+||+.+.+-
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~W  270 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDPDTDTW  270 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCEEEEEecCCCCeecceEEEEECCCCEE
Confidence            678888877654     378889887653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.87  E-value=2.5  Score=36.26  Aligned_cols=94  Identities=14%  Similarity=0.199  Sum_probs=57.1

Q ss_pred             CEEEEEEcCCCCEEEEE-eCCC----eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC-------
Q 012799          152 WVLCIAWSADGKHLVSG-SKAG----ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-------  219 (456)
Q Consensus       152 ~v~~~~~~~~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------  219 (456)
                      .+..++++|++++++.+ +.+|    .++++|+.+++.+...+.  ......+.|.+     +++.|+....+       
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~-----D~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTH-----DGKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECT-----TSSEEEEEECCCCSSCCS
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcC-----CCCEEEEEEeccccCccc
Confidence            34566789999988854 2333    599999999986532221  11124577877     77877655432       


Q ss_pred             ---------CcEEEEECCCCeE--EEEecC--cCccEEEEEeCCCC
Q 012799          220 ---------GDARIWDVSLRKC--VICLSG--HTLAVTCVKWGGDG  252 (456)
Q Consensus       220 ---------g~i~iwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~  252 (456)
                               ..|..+.+.+...  ...+..  ....+..+..+.++
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~  244 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG  244 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS
T ss_pred             ccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCc
Confidence                     2577777765422  233332  23346667778887

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.02  E-value=2.7  Score=34.67  Aligned_cols=188  Identities=12%  Similarity=0.135  Sum_probs=89.9

Q ss_pred             EEEEcCCCCEEEEEe------------CCCeEEEEeCCCCCCccccccCcccceEEEEeccccc----CCCCC-EEEEE-
Q 012799          155 CIAWSADGKHLVSGS------------KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL----NAPCR-RFVSA-  216 (456)
Q Consensus       155 ~~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~-~l~~~-  216 (456)
                      .|+..|+|..+++++            ..|.|.++|+++.......+.-.........|.|..+    ..++. +|++. 
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            455555555554443            2488999998766543211111111100111222111    11444 33333 


Q ss_pred             --eCCCcEEEEECCCCe--E--EEEec-CcCccEEEEEeCCCCeEEEEeC----C------------CcEEEEECCCCeE
Q 012799          217 --SKDGDARIWDVSLRK--C--VICLS-GHTLAVTCVKWGGDGVIYTGSQ----D------------CTIKVWETTQGKL  273 (456)
Q Consensus       217 --~~dg~i~iwd~~~~~--~--~~~~~-~~~~~v~~~~~~~~~~l~~~~~----d------------g~i~iwd~~~~~~  273 (456)
                        ....+|.+|++....  .  +.++. ......++++...++.++....    +            +...+|....++.
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~  198 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV  198 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce
Confidence              245678888774322  2  12222 1234567888887774443311    0            1223333333332


Q ss_pred             EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCc
Q 012799          274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK  353 (456)
Q Consensus       274 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  353 (456)
                       ..........+.++++|+..                                   ..+++-+..+.|+.|++.......
T Consensus       199 -~~~~~~l~~pNGI~~s~d~~-----------------------------------~lyVa~t~~~~i~~y~~~~~~~l~  242 (340)
T d1v04a_         199 -RVVAEGFDFANGINISPDGK-----------------------------------YVYIAELLAHKIHVYEKHANWTLT  242 (340)
T ss_dssp             -EEEEEEESSEEEEEECTTSS-----------------------------------EEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             -EEEcCCCCccceeEECCCCC-----------------------------------EEEEEeCCCCeEEEEEeCCCcccc
Confidence             22222334567788888732                                   235666778899999976543322


Q ss_pred             cc-cccccccEeEEEECC-CCCEEEEE
Q 012799          354 TR-MTGHQQLVNHVYFSP-DGQWVASA  378 (456)
Q Consensus       354 ~~-~~~~~~~v~~~~~sp-~~~~l~s~  378 (456)
                      .. ...-...+-.+.+.+ +|.+.+++
T Consensus       243 ~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         243 PLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             eEEEecCCCCCCccEEecCCCEEEEEE
Confidence            11 112234466778876 45554444

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.04  E-value=2.9  Score=31.44  Aligned_cols=226  Identities=11%  Similarity=0.109  Sum_probs=113.0

Q ss_pred             CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEc-CCCCEEEEE------eCCCeEEEEeCCCCCCccccccC
Q 012799          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS-ADGKHLVSG------SKAGELQCWDPQTGKPSGNPLSG  191 (456)
Q Consensus       119 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~------~~dg~i~vwd~~~~~~~~~~~~~  191 (456)
                      +.++++++...|.+.++-+..++.+..-   ..+|....-- +.-.++...      -.-..|.+-++.......+....
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp  101 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV  101 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC---SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe---cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence            3457788878899999888766644322   2222221110 011112111      11223555555421111112222


Q ss_pred             cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE--EecCc-------CccEEEEEeCCCC--eEEEEeC-
Q 012799          192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSGH-------TLAVTCVKWGGDG--VIYTGSQ-  259 (456)
Q Consensus       192 ~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~-------~~~v~~~~~~~~~--~l~~~~~-  259 (456)
                      ..-.|.++++.      +.+..++|+......+|-++.++...  .+.+.       ...|..+.+-..+  -++++.. 
T Consensus       102 k~vRI~S~~yd------dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~  175 (313)
T d2hu7a1         102 KPMRILSGVDT------GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLS  175 (313)
T ss_dssp             CSBEEEEEEEC------SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETT
T ss_pred             ceEEEEEeeec------CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecc
Confidence            22456777764      45677788888888888887776432  22221       1233344433222  4555554 


Q ss_pred             CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (456)
Q Consensus       260 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  339 (456)
                      .|.+++++...|..           +.....+...+.+.                                 +-+.++..
T Consensus       176 SG~lri~tpkeGS~-----------~~ay~~~gnKV~sd---------------------------------yEt~gEsy  211 (313)
T d2hu7a1         176 SGGLRVFDSGEGSF-----------SSASISPGMKVTAG---------------------------------LETAREAR  211 (313)
T ss_dssp             TEEEEEECCSSEEE-----------EEEEECTTSCEEEE---------------------------------EEESSCEE
T ss_pred             cCCEEEecCCCCcc-----------cceeEccCceeeec---------------------------------cCCCCceE
Confidence            67777776655543           33333333221100                                 11111111


Q ss_pred             cEEEEecCCCCCCccccc------cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799          340 TMFLWEPAVSKQPKTRMT------GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (456)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  400 (456)
                      -| -+|++.+.-....+.      -..-.|+-+-+.|++++++.+-.||.-++|.  +|+.+...++
T Consensus       212 wi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~p~G  275 (313)
T d2hu7a1         212 LV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVEAPQG  275 (313)
T ss_dssp             EE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECCCSS
T ss_pred             EE-EEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEecCCCC
Confidence            22 235543331111111      1223477778999999989999999999997  5666654443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=87.70  E-value=4.4  Score=30.48  Aligned_cols=107  Identities=17%  Similarity=0.187  Sum_probs=61.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEE------eCCCcEEEEECCCCeEEE
Q 012799          161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA------SKDGDARIWDVSLRKCVI  234 (456)
Q Consensus       161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~------~~dg~i~iwd~~~~~~~~  234 (456)
                      +.++++++...|.+.++-+..++.+.  +.  ..+|..... |.   ..-.++..+      -.-..|++-++.......
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vk--Lt--kePI~~~~~-Pk---~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~   96 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVK--LN--REPINSVLD-PH---YGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ   96 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEE--CC--SSCCSEECE-EC---TTBSEEEEEEECSTTSCCEEEEEEETTSTTCEE
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEE--Ee--cccccCcCC-Cc---cCcceEEEEeehhcCcceeeEEEEccCCCCeee
Confidence            44578888889999999888777543  11  222222111 10   011112111      112234444554323333


Q ss_pred             EecCcC-ccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEE
Q 012799          235 CLSGHT-LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIR  275 (456)
Q Consensus       235 ~~~~~~-~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  275 (456)
                      .+.... -.|.+++.......++|+......+|-++.|+..+
T Consensus        97 ~i~spk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrk  138 (313)
T d2hu7a1          97 RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE  138 (313)
T ss_dssp             ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE
T ss_pred             EecCCceEEEEEeeecCceEEEecccCCceEEEEEeCCceee
Confidence            444333 67888888877788899988889999888876543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.37  E-value=8.1  Score=33.19  Aligned_cols=54  Identities=11%  Similarity=0.115  Sum_probs=38.7

Q ss_pred             cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe--------cCCCCEEEEEEcCC
Q 012799          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--------GHKNWVLCIAWSAD  161 (456)
Q Consensus       108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~  161 (456)
                      -..-++|+|.|||++|++--..|.|++++..+++......        .-......|+|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3456799999999988876557999999877765332211        22456789999984

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.09  E-value=8.4  Score=33.08  Aligned_cols=66  Identities=14%  Similarity=0.269  Sum_probs=43.0

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc-----c--ccCcccceEEEEecccccCCCCCEEEE
Q 012799          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN-----P--LSGHKKWITGISWEPVHLNAPCRRFVS  215 (456)
Q Consensus       149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----~--~~~~~~~v~~~~~~~~~~~~~~~~l~~  215 (456)
                      .-...++|+|.|+++++++--..|.|++++..++.....     .  ...-......++++|. +..++...++
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd-f~~n~~iYvs   97 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD-FKNNPYIYIS   97 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT-TTTSCEEEEE
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC-CccCCEEEEE
Confidence            345678999999999888765579999999877653210     0  1122356788999983 3324444443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.87  E-value=6  Score=31.17  Aligned_cols=54  Identities=9%  Similarity=0.103  Sum_probs=26.8

Q ss_pred             eEEEEeCCCCCCccc-cccCcccceEEEEecccccCCCCCEEEEEeC---------CCcEEEEECCCCeEE
Q 012799          173 ELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASK---------DGDARIWDVSLRKCV  233 (456)
Q Consensus       173 ~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~  233 (456)
                      .+.+||+.+++-... .+......-..+..       ++..++.|+.         -..+.+||..+.+..
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~   83 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV-------GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS   83 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEE-------TTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEE-------CCEEEEEeCcccCCCCccccchhhhccccccccc
Confidence            588999888652211 11111111112221       4456666653         235778888766543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.00  E-value=11  Score=31.47  Aligned_cols=112  Identities=6%  Similarity=-0.083  Sum_probs=70.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQT---------GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (456)
Q Consensus       152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i  222 (456)
                      ...-++.++...+++.|+.++ +.|..++.         ..... .....-..|..++|+.       +.++.. .++.+
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~-~~~~~ip~v~~vafs~-------d~l~v~-~~~~l  107 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPDVIFVCFHG-------DQVLVS-TRNAL  107 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTTEEEEEEET-------TEEEEE-ESSEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcc-eeccCCCCeEEEEeeC-------CEEEEE-eCCCE
Confidence            455788888777888888775 55655321         11100 1111123577788754       345544 44668


Q ss_pred             EEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEE
Q 012799          223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI  274 (456)
Q Consensus       223 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  274 (456)
                      ..++...-...........++..+.+.|. .++....+|.+.++++..++..
T Consensus       108 ~~~~~~~l~~~~~~~~~~~~~~~~~~~p~-~~~l~~~~~~~~~~~l~~~~~~  158 (381)
T d1xipa_         108 YSLDLEELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTK  158 (381)
T ss_dssp             EEEESSSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEeeccccccccccccccccceecCCc-eeEEEecCCCEEEEEeccCccc
Confidence            88887765444444444567888888886 5666777899999999887643