Citrus Sinensis ID: 012816

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
Protein Sequence
MKNEERKVNPNCIKASNPYHECGERCFKRNGEANALGFKKQSDNHNGVTEGVISVKKNEGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccEEEccEEEEcccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccEEEccccccEccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccEEcEEEEEEEEcccccccccccccccEEEccEcccccccccccccccccccEEEEccEEEcccHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHc
Coil and Loop (DISEMBL)
mkneerkvnpncikasnpyhecgercfkrngeanalgfkkqsdnhngvtEGVISVkknegrkvdptcikasnpyhecgehcfkrngeanargvnkesgswsfgrknkasdsqpgtpltpravdkvavggqkangqharsenypkkkvesengksfsrpehfsreihpedhslnkekvrstqsvppsenikmndmsksppkesvtslpgaspskngkdnkvqapieihhstedggedipspadgsrnfsfsgidlasgdsddeeaqsvisdsvsvgkYHVRASISSILQSIISRYGDIaancnlesnsMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL
Flexible Loop (DISEMBL)
mkneerkvnpncikasnpyhECGERCFKRNGEANALgfkkqsdnhngvtegvisvkknegrkvdptCIKASNPYHECGEHCFKRNGEANARGVNKesgswsfgrknkasdsqpgtpltpravDKVAVGGqkangqharsenypkkkvesengksfsrpehfsreihpedhslnkekvrstqsvppsenikmndmsksppKESVTSlpgaspskngkdnKVQAPIEIHHstedggedipspaDGSRNFSFSGIDLASGDSDDEEAQSVIsdsvsvgkyHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQatqskvtkfsqksladeil
Low Complexity Region (SEG)
MKNEERKVNPNCIKASNPYHECGERCFKRNGEANALGFKKQSDNHNGVTEGVISVKKNEGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRAsissilqsiisRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL
Disordered region (IsUnstruct)
******************YHECGERCFK*************************************TCIKASNPYHECGEHCF*********************************************************************************************************************************************************************************************VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLL*********************************************************************
Disordered Region (DISOPRED)
******************YHECGERCF******************************************************************************************************************************************************************************************************************************************************VGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI**********************************************************************ATQSKVTKFSQKSLADEIL
Disordered Region (DISEMBL)
********NPNCIKASNPYHECGERCFKRNGEANALGFKKQSDNHNGVTEGVISVKKNEGRKVDPTCIKASNPYHECGEHCFKRNGEANARG************************LTPRAVDKVAVGG*****************************EHFSREIHPEDHS*********************************************DNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLAS**********VISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK**************
Disordered Region (DISPRO)
********NPNCIKASNPYHECGERCFKRNGEAN*****************VISVKKNEGRKVDPTCIKASNPYHECGEHCFKRNGEAN*******************************************************************************************************************************DNKVQAPIEIHHSTEDG*EDIPSPADGSRNFSFSGIDL***********SVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLAD**L
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNEERKVNPNCIKASNPYHECGERCFKRNGEANALGFKKQSDNHNGVTEGVISVKKNEGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVTKFSQKSLADEIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
224105147	541	predicted protein [Populus trichocarpa]	0.918	0.774	0.489	1e-91
449454227	402	PREDICTED: uncharacterized protein LOC10	0.826	0.937	0.460	2e-81
255560551	400	conserved hypothetical protein [Ricinus	0.850	0.97	0.492	7e-81
356536380	437	PREDICTED: uncharacterized protein LOC10	0.866	0.903	0.390	1e-67
356574151	411	PREDICTED: uncharacterized protein LOC10	0.881	0.978	0.384	7e-66
224078359	224	predicted protein [Populus trichocarpa]	0.475	0.968	0.600	1e-63
449458628	442	PREDICTED: uncharacterized protein LOC10	0.929	0.959	0.345	3e-54
15236270	386	phospholipase-like (PEARLI 4) family pro	0.776	0.917	0.356	1e-52
145334227	401	phospholipase-like (PEARLI 4) family pro	0.776	0.882	0.356	2e-52
186516425	398	phospholipase-like (PEARLI 4) family pro	0.776	0.889	0.356	2e-52

>gi|224105147|ref|XP_002313701.1| predicted protein [Populus trichocarpa] gi|222850109|gb|EEE87656.1| predicted protein [Populus trichocarpa]

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 228/466 (48%), Positives = 282/466 (60%), Gaps = 47/466 (10%)

Query: 12  CIKASNPYHECGERCFKRNGEANALGFKKQSDNHNGVTEGVISVKKNEGRKVDPTCIKAS 71
           C KASNPYH+C E C  R  +AN  G KKQS+                  +  P C +AS
Sbjct: 102 CPKASNPYHKCEEFCSNRTADANPRGVKKQSE------------------RAQP-CPRAS 142

Query: 72  NPYHECGEHCFKRNGEANARGVNKESGSW-----SFGRKNKASDSQPGTPLTPRAVD--- 123
           NP H+C E C  R  EAN +GV KESGS+     SFGRK K S+SQ  +P   RAV+   
Sbjct: 143 NPSHKCDEFCSNRTSEANPQGVEKESGSFLDTALSFGRKKKESESQQNSP---RAVNNAP 199

Query: 124 --KVAVGGQKANGQHARSENYP-----KKKVESENGKSFSRPEHFSREIHPEDHSLNKEK 176
             K AV    A     R+   P     KK  E EN +SFS  +  S E + EDH+L+K  
Sbjct: 200 AVKGAVNNAPAVKAVRRAPPSPLILPTKKDEEPENSRSFSSSQPHSDESYSEDHALDKVP 259

Query: 177 VRSTQSVPPSENIKMNDMSKSPPKESVTS--LPG-ASPSKNGK--DNKVQAPIEIHHSTE 231
           V+S   +  S  I   D  KSP K S+    +P  A P +NGK   +   AP   + S  
Sbjct: 260 VQSPGPMHVSGKI-TPDPPKSPSKISLACYKIPTPAEPQQNGKLHGSPKAAP---YPSAN 315

Query: 232 DGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDSVSV-GKYHVRASISSILQSI 290
             G     P     NFSFSGI  AS  SD EE QSV+SDS    GKYHVRA+++SILQ I
Sbjct: 316 HVGRVTNGPITEYLNFSFSGISRASEGSDGEEVQSVVSDSCVSVGKYHVRANVASILQLI 375

Query: 291 ISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQ 350
             +YGDIA    LES SMRAYYLECLC VVQELQ T   Q+TK+KV+EM+AVLKDVESAQ
Sbjct: 376 FEKYGDIATGSRLESASMRAYYLECLCFVVQELQCTPFKQLTKSKVREMLAVLKDVESAQ 435

Query: 351 IDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 410
           IDV WLR+ILN+++E +E S QHQ  + +K+NC +L+ES KKELES M +LALKEK VA 
Sbjct: 436 IDVSWLRDILNDLAEGMELSNQHQAAEESKSNCDDLIESKKKELESMMEDLALKEKAVAD 495

Query: 411 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456
            K  + +T+  LS+LELES++L + I + QS+V KF +K LADEIL
Sbjct: 496 AKAQITETRTHLSNLELESSKLGETISSIQSRVEKFHEKPLADEIL 541

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454227|ref|XP_004144857.1| PREDICTED: uncharacterized protein LOC101210853 [Cucumis sativus] gi|449519968|ref|XP_004167006.1| PREDICTED: uncharacterized protein LOC101226690 [Cucumis sativus]

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 194/421 (46%), Positives = 264/421 (62%), Gaps = 44/421 (10%)

Query: 59  EGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSW------SFGRKNKASDSQ 112
           E RKV P CI ASNP+HEC ++C K+  E+ A    K  GS+      SFGRK K S  +
Sbjct: 3   ERRKVRPDCIYASNPFHECTDYCIKKTAESKAGKDKKSKGSFRLDISKSFGRK-KGSRPK 61

Query: 113 PGTPLTPRAVDKVAVGGQKANGQHAR-----SENYPKKKVESENGKSFSRPEHF-SREIH 166
           P     P+ VD    GG+ ++   +      S   PKKKVES NG   S  + F S EIH
Sbjct: 62  P-----PKDVD----GGRYSSTVPSEPLSLNSRISPKKKVESINGGHISPAKRFYSEEIH 112

Query: 167 PEDHSLNKEKVRSTQSVPPSENIKMNDMS-KSPPKESVTSLPGASPSKNGKDNKVQAPIE 225
           PED SLN E+   T  +P  +++ M + S  SP K S+  L   S +KNG  N       
Sbjct: 113 PEDPSLNVEQ-HDTPRIPSYDSLMMPEYSVDSPKKGSIRMLEQMSNNKNGGGN------- 164

Query: 226 IHHSTEDGGEDIPSPADGSRNF---------SFSGIDLASGDSDDEEAQSVISDS-VSVG 275
            H +  D     P+  +G   F         S SG +    DSD+EE +SV S+  V VG
Sbjct: 165 -HETFFDNR--TPNGNNGKERFRKQSSESSFSLSGFEQTLVDSDEEEIESVNSEQCVPVG 221

Query: 276 KYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAK 335
           KYHV++S SSIL SI  +YGDIAA C LES SMR+YYLEC+C V+QELQST   Q+TK+K
Sbjct: 222 KYHVKSSFSSILTSIFEKYGDIAATCKLESVSMRSYYLECVCYVIQELQSTEFHQLTKSK 281

Query: 336 VKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELE 395
           V+E++A+ KDVES++I++ WL++ +NEI++A+E  +QH+ IDAAK +C   LES KKEL+
Sbjct: 282 VRELLAIFKDVESSEINITWLKSRINEIAQAVELRSQHRAIDAAKTDCEQNLESIKKELD 341

Query: 396 SQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 455
           SQM +LALKEKE++  K  VA+T+ARLS+LEL+S++L+++I +  SKV  F  KS +D++
Sbjct: 342 SQMADLALKEKELSDAKTKVAETEARLSELELKSSQLKEMISSIDSKVENFRCKSFSDDL 401

Query: 456 L 456
           L
Sbjct: 402 L 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560551|ref|XP_002521290.1| conserved hypothetical protein [Ricinus communis] gi|223539558|gb|EEF41146.1| conserved hypothetical protein [Ricinus communis]

 Score =  307 bits (786), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 198/402 (49%), Positives = 253/402 (62%), Gaps = 14/402 (3%)

Query: 62  KVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSW------SFGRKNKASDSQPGT 115
           +V P C+ ASNPYHECG  C ++  +       K+SGS+      SFGRK K S+SQP +
Sbjct: 6   RVHPDCVNASNPYHECGVACLEKIAQGQGWKEKKKSGSFILDTSLSFGRKKKGSESQPRS 65

Query: 116 PLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKE 175
           P     V   A     A+    RS    KKKVES+NG S S     S E + +DHS +K 
Sbjct: 66  PKVANNVS-AAKAVYPADLSSPRSPFPTKKKVESDNGHSSSSSRQHSEESYSQDHSFDKG 124

Query: 176 KVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGE 235
           +V + + VP S N+K  D  K+    S T    A P++     K   P  I +     G 
Sbjct: 125 QVLAPELVPVSGNLK-PDGPKNLSLGSFTCFAIAPPTEQDDKEKSPLPGAIKNVEITNGR 183

Query: 236 DIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRY 294
                +  S NF+FSGI  A+  SDDEE  SVISDS VSVGKYHVRA+ +SILQSII +Y
Sbjct: 184 -----STESLNFTFSGISRATEGSDDEEILSVISDSCVSVGKYHVRANSASILQSIIDKY 238

Query: 295 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVD 354
           GDIAANC LES S+R YYLECLCSVVQELQSTSL Q+TK+KV+E++AVLKDVESAQIDV 
Sbjct: 239 GDIAANCRLESTSLRTYYLECLCSVVQELQSTSLNQLTKSKVRELLAVLKDVESAQIDVS 298

Query: 355 WLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKES 414
           WLR+ILN ++EA+E + + Q  + AK NC +++EST+KELES + EL  KE+ VA  K  
Sbjct: 299 WLRSILNGLTEAVELNNKQQAAEEAKTNCDHVIESTRKELESMVEELGQKEQAVANTKAR 358

Query: 415 VAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456
           + +  A LS+LELES+ L   I + +SK+  F  K L D+IL
Sbjct: 359 IEEISAHLSELELESSELSDTILSLRSKIDNFHSKPLRDQIL 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536380|ref|XP_003536716.1| PREDICTED: uncharacterized protein LOC100788258 [Glycine max]

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 180/461 (39%), Positives = 248/461 (53%), Gaps = 66/461 (14%)

Query: 8   VNPNCIKASNPYHECGERCFKRNGEAN---------ALGFKKQSDNHNGVTEGVISVKKN 58
           V P+C+ A NPYHEC E C  R  EA             FK   D    VT+G +     
Sbjct: 31  VMPDCVYAPNPYHECTEACVHRIKEAKPGKPSKTKKGTAFK---DYRRSVTDGELGKTMK 87

Query: 59  EGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWS--FGRKNKASDSQPGTP 116
           E ++    C KASNPYH C E+C K +           SG+ S  F R+ K   S+P  P
Sbjct: 88  EEKRRPSGCPKASNPYHVCDEYCQKAD-----------SGTMSLNFDRRKKVG-SKPELP 135

Query: 117 LTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEK 176
           +   +V    +G    +   +   NY +K                            KE+
Sbjct: 136 VL-DSVPPSKIGAIYLSDASSPLSNYSEK---------------------------TKEE 167

Query: 177 VRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGED 236
            +S + +P S  I + D+   P    V +        NG  N     + I  S +D G  
Sbjct: 168 SKSNELIPVSGEIHVLDVM--PTNHKVQA------KHNGDKNASPKVVPIT-SVDDTG-C 217

Query: 237 IPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYG 295
           +  P  GS NF FSG+   + DSD EE +SV+S+S V VGKYHV+ S + IL+SI  +YG
Sbjct: 218 LTKPDGGSMNFCFSGLH-DNEDSDGEETESVVSESRVPVGKYHVKESFAPILRSIFEKYG 276

Query: 296 DIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW 355
           DI A+C+LES  MR+YY+EC+C VVQELQST +MQ+TK+K+KE+MA+LKDVESAQ+ V W
Sbjct: 277 DIGASCHLESVVMRSYYVECVCFVVQELQSTPIMQLTKSKIKELMAILKDVESAQLRVAW 336

Query: 356 LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESV 415
           LR+I++EI+E IE   +H   + AKAN    +ES  KELES +  LA KE+EV  +K  +
Sbjct: 337 LRSIVDEITENIELIDEHCVAETAKANSDREVESLNKELESNLEILAQKEQEVTDIKTRI 396

Query: 416 AKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456
              + RLS+LEL+S  L++ I + +SKV     KSL DE++
Sbjct: 397 EAIRERLSELELKSCDLDKNILSIKSKVDNLDSKSLLDELV 437

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574151|ref|XP_003555215.1| PREDICTED: uncharacterized protein LOC100811116 [Glycine max]

 Score =  257 bits (657), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 177/460 (38%), Positives = 246/460 (53%), Gaps = 58/460 (12%)

Query: 4   EERKVNPNCIKASNPYHECGERCFKRNGEANALGFKKQS----DNHNGVTEGVISVKKNE 59
           E  +V  NC+ A NPYHEC E C +R  EA      K      D    VT+G +  K  E
Sbjct: 3   EHGRVMANCVYAPNPYHECTEACVQRIKEAKPGKPSKTKKVFKDYRRSVTDGELGKKMKE 62

Query: 60  GRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWS--FGRKNKASDSQPGTPL 117
            ++    C KASNPYH C E+C K +           SG+ S  F R+ K   S+P  P+
Sbjct: 63  EKRRPSGCPKASNPYHVCDEYCQKAD-----------SGTMSLNFDRRKKVG-SKPELPV 110

Query: 118 TPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKV 177
              +V    +G    +   +   NY +K                            KE+ 
Sbjct: 111 L-DSVPPSKIGAIYLSDASSPLSNYSEK---------------------------TKEES 142

Query: 178 RSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDI 237
           +S + +P S  I + D+   P    V S        NG  N     + I  S +D G  +
Sbjct: 143 KSNELIPVSGEIHVLDVM--PTNHKVQS------KHNGDKNASPKVVPIT-SVDDTG-CL 192

Query: 238 PSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGD 296
             P  GS NF  SG+   + DSD  E +SV+S+S V VGKYHV+ S + IL+SI  +YGD
Sbjct: 193 TKPDGGSMNFCLSGLH-DNEDSDGGETESVVSESRVPVGKYHVKESFAPILRSIFEKYGD 251

Query: 297 IAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWL 356
           I A+C+LES  MR+YY+EC+C VVQELQST +MQ+ K+K+ E+MA+LKDVESAQ+ V WL
Sbjct: 252 IGASCHLESVVMRSYYVECVCFVVQELQSTPIMQLAKSKIMELMAILKDVESAQLRVAWL 311

Query: 357 RNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVA 416
           RNI++EI+E IE   +H   + AKAN    +E+  KELES +  LA KE+EV  +K  + 
Sbjct: 312 RNIVDEIAENIELIDEHCMAEMAKANSDREMETLNKELESNLESLAQKEQEVTDIKTRIE 371

Query: 417 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456
           + +  LS+LEL+S+ L + I + +SKV     KSL DE++
Sbjct: 372 EIREHLSELELKSSDLAKNILSIKSKVDNLDSKSLLDELV 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078359|ref|XP_002305527.1| predicted protein [Populus trichocarpa] gi|222848491|gb|EEE86038.1| predicted protein [Populus trichocarpa]

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 131/218 (60%), Positives = 164/218 (75%), Gaps = 1/218 (0%)

Query: 240 PADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIA 298
           P   +  + + GI  AS +SD+EE QSVISDS VSVGKYHVR +I+SILQ I+ +YGDIA
Sbjct: 7   PWTNACVWEYHGISRASEESDEEEVQSVISDSCVSVGKYHVRENIASILQLILDKYGDIA 66

Query: 299 ANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 358
           A   LES SMRAYYLECLCSVV ELQ TS  Q+T +KV+EM+AVLKDVESAQIDV WLR+
Sbjct: 67  AGSRLESASMRAYYLECLCSVVHELQCTSFKQLTNSKVREMLAVLKDVESAQIDVSWLRD 126

Query: 359 ILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKT 418
           ILN+++E +E S+QHQ  + AK+ C + +ES KKELES M +LA KEK VA  K  +++T
Sbjct: 127 ILNDLAEGMELSSQHQAAEEAKSKCDHAIESIKKELESMMEDLAQKEKAVADAKAQISET 186

Query: 419 KARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456
           + RL+ LEL+S+RL + I +  S V KF  K LADEIL
Sbjct: 187 RDRLNKLELDSSRLSETISSIWSTVEKFHDKPLADEIL 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458628|ref|XP_004147049.1| PREDICTED: uncharacterized protein LOC101220927 [Cucumis sativus] gi|449489625|ref|XP_004158368.1| PREDICTED: uncharacterized LOC101220927 [Cucumis sativus]

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 157/455 (34%), Positives = 241/455 (52%), Gaps = 31/455 (6%)

Query: 11  NCIKASNPYHECGERCFKRNGEANALGFKKQSDNHNGVTEGVISVKKNEGRKVDPTCIKA 70
           +C  ASNPYH C E CF++ GE+     +K S    G +    S ++ +  + D  C + 
Sbjct: 10  DCSHASNPYHVCSEYCFEKKGESKKQIVRKDS----GDSAWKFSSERKKTVRSD--CTRG 63

Query: 71  SNPYHECGEHCFKRNGEANARGVNKESGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQ 130
           SNPYH C E C     ++      + S   S G +  +       P +PR +        
Sbjct: 64  SNPYHNCDEFCSNMTTQSGRPKAERGSAVGSGGARRDS------LPKSPRKLSDPLASAV 117

Query: 131 KANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSEN-- 188
            +  Q        K  V  E+ K+   PE  +  +  ED    +E+ + ++ +  S N  
Sbjct: 118 SSKPQ------VTKTCVPPESSKTSVPPEERTHFV--EDSLTIEEQNKFSKLILVSANAL 169

Query: 189 -IKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIH----HSTEDGGEDIPSPADG 243
            ++ N++ K    E+ +     S     K +++   ++      H  E+G     SP   
Sbjct: 170 KVEANNLQKLHKTETYSITSVKSKEHITKSSEISELVQDEDPSVHEEEEGNHKTTSPNIT 229

Query: 244 SRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCN 302
           S  F F  +      SD+ + +SV S+  V VGKYHV+ S++ ILQSI +++GDIAA+C 
Sbjct: 230 S--FPFPTMAPNQKGSDENDVKSVSSEPYVPVGKYHVKLSLAPILQSIFNKHGDIAASCK 287

Query: 303 LESNSMRAYYLECLCSVVQELQSTSLMQ-MTKAKVKEMMAVLKDVESAQIDVDWLRNILN 361
           LES S+R+YYLEC+C ++ ELQ T   Q ++K+KVKE++A+L DV S+ ++V WL +ILN
Sbjct: 288 LESISIRSYYLECVCYIIHELQHTKFSQKVSKSKVKELLAILNDVVSSGMNVGWLHSILN 347

Query: 362 EISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKAR 421
           +I+EA+E S Q  T++ AKANC + LE  K ELESQ  +L  KEKE+   K  VA T+AR
Sbjct: 348 DIAEAVESSGQQFTLEVAKANCDHELELIKNELESQTQDLTRKEKEMNDAKAKVAGTRAR 407

Query: 422 LSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456
           LS+LE +  +L + I + Q KV       L D++L
Sbjct: 408 LSELESKYLQLNKEISSLQFKVNGLKCNDLTDDLL 442

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236270|ref|NP_195237.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|30690215|ref|NP_849495.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|14326527|gb|AAK60308.1|AF385717_1 AT4g35110/M4E13_160 [Arabidopsis thaliana] gi|2924521|emb|CAA17775.1| putative protein [Arabidopsis thaliana] gi|7270462|emb|CAB80228.1| putative protein [Arabidopsis thaliana] gi|22137306|gb|AAM91498.1| AT4g35110/M4E13_160 [Arabidopsis thaliana] gi|23397133|gb|AAN31850.1| unknown protein [Arabidopsis thaliana] gi|332661066|gb|AEE86466.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|332661067|gb|AEE86467.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana]

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 151/424 (35%), Positives = 224/424 (52%), Gaps = 70/424 (16%)

Query: 61  RKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKE------SGSWSFGRKNKASDSQPG 114
           RK  P C+ A NP+HEC   C ++  + + +   K+      S S SFGRK K S+SQP 
Sbjct: 5   RKAHPDCVYADNPFHECASACLEKIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESNSQPP 64

Query: 115 TPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPEDH 170
           TPL+ R       G    N         P    KKK+ SE   SF+     S    P+D 
Sbjct: 65  TPLSARPYQNGRGGFANGNSPKVHHSVAPPASVKKKIVSETKNSFTS----SSSGDPDDF 120

Query: 171 SLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHST 230
             +K + + +Q++P S N  + D SK      V+  PG     NGK              
Sbjct: 121 FNHKPEKKPSQTIPLSSN-NLVDQSKV-----VSPKPGIQ-EHNGK-------------I 160

Query: 231 EDGGEDIPSPADGSRNFSFSGIDLASGDSD-----------------DEEAQSVISDS-V 272
            +GGE        +R FSF  +  + G                    + + +SV+SD+ V
Sbjct: 161 GEGGE--------TRLFSFLSLPRSPGKESNDDFSDDDDENNNEIGVELDLESVMSDTFV 212

Query: 273 SVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMT 332
           SVGKY VR+  S+IL ++I ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q++
Sbjct: 213 SVGKYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLS 272

Query: 333 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKK 392
           K KVKEM+AVLKD+ES  I+V WLR++L       EF+   + ++  K     L+++ ++
Sbjct: 273 KVKVKEMLAVLKDLESVNIEVAWLRSVLE------EFAQSQEDVENEKERHDGLVKAKRE 326

Query: 393 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 452
           ELE+Q  +L   EKEV  +K  + +T+A++ ++E E  R+E++      K+ KF  KS  
Sbjct: 327 ELEAQETDLVRMEKEVVEVKRRIEETRAQMVEIEAERLRMEKM----GFKMEKFKGKSFI 382

Query: 453 DEIL 456
           DE+L
Sbjct: 383 DELL 386

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334227|ref|NP_001078494.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|332661068|gb|AEE86468.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana]

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 151/424 (35%), Positives = 224/424 (52%), Gaps = 70/424 (16%)

Query: 61  RKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKE------SGSWSFGRKNKASDSQPG 114
           RK  P C+ A NP+HEC   C ++  + + +   K+      S S SFGRK K S+SQP 
Sbjct: 20  RKAHPDCVYADNPFHECASACLEKIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESNSQPP 79

Query: 115 TPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPEDH 170
           TPL+ R       G    N         P    KKK+ SE   SF+     S    P+D 
Sbjct: 80  TPLSARPYQNGRGGFANGNSPKVHHSVAPPASVKKKIVSETKNSFTS----SSSGDPDDF 135

Query: 171 SLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHST 230
             +K + + +Q++P S N  + D SK      V+  PG     NGK              
Sbjct: 136 FNHKPEKKPSQTIPLSSN-NLVDQSKV-----VSPKPGIQ-EHNGK-------------I 175

Query: 231 EDGGEDIPSPADGSRNFSFSGIDLASGDSD-----------------DEEAQSVISDS-V 272
            +GGE        +R FSF  +  + G                    + + +SV+SD+ V
Sbjct: 176 GEGGE--------TRLFSFLSLPRSPGKESNDDFSDDDDENNNEIGVELDLESVMSDTFV 227

Query: 273 SVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMT 332
           SVGKY VR+  S+IL ++I ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q++
Sbjct: 228 SVGKYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLS 287

Query: 333 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKK 392
           K KVKEM+AVLKD+ES  I+V WLR++L       EF+   + ++  K     L+++ ++
Sbjct: 288 KVKVKEMLAVLKDLESVNIEVAWLRSVLE------EFAQSQEDVENEKERHDGLVKAKRE 341

Query: 393 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 452
           ELE+Q  +L   EKEV  +K  + +T+A++ ++E E  R+E++      K+ KF  KS  
Sbjct: 342 ELEAQETDLVRMEKEVVEVKRRIEETRAQMVEIEAERLRMEKM----GFKMEKFKGKSFI 397

Query: 453 DEIL 456
           DE+L
Sbjct: 398 DELL 401

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186516425|ref|NP_001119119.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|332661069|gb|AEE86469.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana]

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 151/424 (35%), Positives = 224/424 (52%), Gaps = 70/424 (16%)

Query: 61  RKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKE------SGSWSFGRKNKASDSQPG 114
           RK  P C+ A NP+HEC   C ++  + + +   K+      S S SFGRK K S+SQP 
Sbjct: 17  RKAHPDCVYADNPFHECASACLEKIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESNSQPP 76

Query: 115 TPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPEDH 170
           TPL+ R       G    N         P    KKK+ SE   SF+     S    P+D 
Sbjct: 77  TPLSARPYQNGRGGFANGNSPKVHHSVAPPASVKKKIVSETKNSFTS----SSSGDPDDF 132

Query: 171 SLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHST 230
             +K + + +Q++P S N  + D SK      V+  PG     NGK              
Sbjct: 133 FNHKPEKKPSQTIPLSSN-NLVDQSKV-----VSPKPGIQ-EHNGK-------------I 172

Query: 231 EDGGEDIPSPADGSRNFSFSGIDLASGDSD-----------------DEEAQSVISDS-V 272
            +GGE        +R FSF  +  + G                    + + +SV+SD+ V
Sbjct: 173 GEGGE--------TRLFSFLSLPRSPGKESNDDFSDDDDENNNEIGVELDLESVMSDTFV 224

Query: 273 SVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMT 332
           SVGKY VR+  S+IL ++I ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q++
Sbjct: 225 SVGKYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLS 284

Query: 333 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKK 392
           K KVKEM+AVLKD+ES  I+V WLR++L       EF+   + ++  K     L+++ ++
Sbjct: 285 KVKVKEMLAVLKDLESVNIEVAWLRSVLE------EFAQSQEDVENEKERHDGLVKAKRE 338

Query: 393 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 452
           ELE+Q  +L   EKEV  +K  + +T+A++ ++E E  R+E++      K+ KF  KS  
Sbjct: 339 ELEAQETDLVRMEKEVVEVKRRIEETRAQMVEIEAERLRMEKM----GFKMEKFKGKSFI 394

Query: 453 DEIL 456
           DE+L
Sbjct: 395 DELL 398

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
TAIR|locus:2131611	401	AT4G35110 "AT4G35110" [Arabido	0.811	0.922	0.352	8e-53
TAIR|locus:2039435	382	AT2G16900 "AT2G16900" [Arabido	0.802	0.958	0.360	1.6e-47
TAIR|locus:2121159	612	AT4G38550 [Arabidopsis thalian	0.469	0.349	0.369	7e-37
TAIR|locus:2047122	748	pEARLI4 "AT2G20960" [Arabidops	0.543	0.331	0.337	5.1e-36
TAIR|locus:2046992	530	AT2G20950 [Arabidopsis thalian	0.469	0.403	0.359	1.1e-35
TAIR|locus:2121169	523	AT4G38560 "AT4G38560" [Arabido	0.425	0.370	0.384	1.9e-35
TAIR|locus:2147937	241	AT5G11140 "AT5G11140" [Arabido	0.407	0.771	0.382	1.5e-28
TAIR|locus:2085385	343	AT3G58270 "AT3G58270" [Arabido	0.425	0.565	0.258	4.6e-06
TAIR|locus:2085460	453	AT3G58220 "AT3G58220" [Arabido	0.640	0.644	0.229	2.1e-05
TAIR|locus:2085325	316	AT3G58400 "AT3G58400" [Arabido	0.348	0.503	0.241	3e-05

TAIR|locus:2131611 AT4G35110 "AT4G35110" [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 144/408 (35%), Positives = 217/408 (53%)

Query:    61 RKVDPTCIKASNPYHECGEHCFKRNGEANAR-GVNKESG-----SWSFGRKNKASDSQPG 114
             RK  P C+ A NP+HEC   C ++  + + +    K+S      S SFGRK K S+SQP 
Sbjct:    20 RKAHPDCVYADNPFHECASACLEKIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESNSQPP 79

Query:   115 TPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPEDH 170
             TPL+ R       G    N         P    KKK+ SE   SF+     S    P+D 
Sbjct:    80 TPLSARPYQNGRGGFANGNSPKVHHSVAPPASVKKKIVSETKNSFTS----SSSGDPDDF 135

Query:   171 SLNKEKVRSTQSVPPSENIKMNDMSKS-PPKESVTSLPGASPSKNGKDNKVQAPIEIHHS 229
               +K + + +Q++P S N  + D SK   PK  +    G      G + ++ + + +  S
Sbjct:   136 FNHKPEKKPSQTIPLSSN-NLVDQSKVVSPKPGIQEHNGKIGE--GGETRLFSFLSLPRS 192

Query:   230 TEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRAXXXXXXX 288
                   D  S  D   N    G++L        + +SV+SD+ VSVGKY VR+       
Sbjct:   193 PGKESNDDFSDDDDENNNEI-GVEL--------DLESVMSDTFVSVGKYRVRSGSSTILS 243

Query:   289 XXXXRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES 348
                 ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q++K KVKEM+AVLKD+ES
Sbjct:   244 AVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLSKVKVKEMLAVLKDLES 303

Query:   349 AQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEV 408
               I+V WLR++L E      F+   + ++  K     L+++ ++ELE+Q  +L   EKEV
Sbjct:   304 VNIEVAWLRSVLEE------FAQSQEDVENEKERHDGLVKAKREELEAQETDLVRMEKEV 357

Query:   409 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456
               +K  + +T+A++ ++E E  R+E++      K+ KF  KS  DE+L
Sbjct:   358 VEVKRRIEETRAQMVEIEAERLRMEKM----GFKMEKFKGKSFIDELL 401

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2039435 AT2G16900 "AT2G16900" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 147/408 (36%), Positives = 210/408 (51%)

Query:    61 RKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGS------WSFGRKNKASDSQPG 114
             RK  P C  +SNP+HEC   C ++  +      +K+ GS       SFG+K   ++SQP 
Sbjct:     5 RKAHPDCRYSSNPFHECASDCLEKISQGRGNKNSKKQGSKILSLPGSFGKKK--TESQPP 62

Query:   115 TPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSR--PEHFSREIHPEDHSL 172
             +PL+ R     A    K   Q   S    KK    E  KS      +  S +++ ++ S 
Sbjct:    63 SPLSTRNYQNGAANTPKVR-QSRPSPVAMKKTPVPEANKSLHSLSSDGISIDLNGQNDSF 121

Query:   173 NKEKVRSTQSVPPSENIKMNDMSK--SP-PKESVTSLPGASPSKNGKDNKVQAPIEIHHS 229
             N ++ + +++VP S N  M D  K  SP P+    S    + S+    N V  P      
Sbjct:   122 NHKQEKPSRTVPLSPN-SMADRGKPLSPRPQGHEHSGKNDTASEISLFNVVSPP---RSC 177

Query:   230 TEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRAXXXXXXX 288
               D  +D     D   N    G++L        +  SV+SDS VSVGKY V +       
Sbjct:   178 ANDDDDD-----DDENNGYEEGVEL--------DLISVMSDSCVSVGKYRVNSSVSTILQ 224

Query:   289 XXXXRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES 348
                 ++GDIAANC LES SMR+ YLECLCS++QEL ST + Q+T+ KVKEM+AVLKD+ES
Sbjct:   225 SIIDKHGDIAANCKLESASMRSRYLECLCSLMQELGSTPVGQLTELKVKEMVAVLKDLES 284

Query:   349 AQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEV 408
               IDV W+R++L E      F+   +  D+ K     L+ S K+E+E Q  +LA  EKEV
Sbjct:   285 VNIDVGWMRSVLEE------FAQYQENTDSEKERQEGLVRSKKQEMEIQEADLARIEKEV 338

Query:   409 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456
             A  +  V + KA L++LE E  R+E++      KV K+  K+  DE+L
Sbjct:   339 AEARLRVEEMKAELAELETERLRMEEM----GFKVEKYKGKTFLDELL 382

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006979 "response to oxidative stress" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2121159 AT4G38550 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 7.0e-37, Sum P(3) = 7.0e-37
 Identities = 81/219 (36%), Positives = 126/219 (57%)

Query:   238 PSPADGSRNFSFSGIDLASG----DSDDEEAQSVISDS-VSVGKYHVRAXXXXXXXXXXX 292
             P   D S++F+   I    G    +S  EE+QS+IS++ VSV  Y VR            
Sbjct:   390 PELPDESQSFTMQEITKMRGLKNYESGKEESQSMISEAYVSVANYRVRQSVSETLQAIID 449

Query:   293 RYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQID 352
             ++GDIAA+  L++ + R+YYLE L +VV EL+ T L  +TK +V E+ AV+KD+ES +I+
Sbjct:   450 KHGDIAASSKLQAMATRSYYLESLAAVVMELKKTVLRDLTKTRVAEIAAVVKDMESVKIN 509

Query:   353 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLK 412
             V WL+  + E++EA+E+  Q+ T    K  C   L + K E+E    EL  +EKE+   +
Sbjct:   510 VSWLKTAVTELAEAVEYFGQYDTAKVEKEVCERDLTAKKGEMEEMTAELVKREKEIKECR 569

Query:   413 ESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL 451
             E V     RL  LE++ ++L + +   QSKV KF  +++
Sbjct:   570 EKVTVVAGRLGQLEMKGSKLNKNLDLFQSKVHKFQGEAV 608

GO:0005634 "nucleus" evidence=ISM

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2047122 pEARLI4 "AT2G20960" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.1e-36, Sum P(2) = 5.1e-36
 Identities = 88/261 (33%), Positives = 139/261 (53%)

Query:   201 ESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSD 260
             E   S+   + SK+G   +     E  H   +   ++P   D S++FS + I    G   
Sbjct:   496 EHTVSIYAETTSKSGSSEQ-----EEQHKANNEPPELP---DESQSFSLAEISRMKGIIT 547

Query:   261 DEEA----QSVISDS-VSVGKYHVRAXXXXXXXXXXXRYGDIAANCNLESNSMRAYYLEC 315
             + E     QS++S+S VSVG+Y VRA           ++GDIA+   L+S + R+YYL+ 
Sbjct:   548 NNEIRDVMQSILSESYVSVGQYKVRASVSTTLQHILQKHGDIASGSKLQSLATRSYYLDM 607

Query:   316 LCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQT 375
             L SVV ELQ+T L  + +++V EM+A++KD+ES +I   WL+ +L EI EA++   +H+ 
Sbjct:   608 LASVVFELQTTPLKYLKESRVVEMVAIVKDIESVKIKAGWLKPVLEEIVEAVKHYDEHKM 667

Query:   376 IDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI 435
                 K      +   K+E E Q+ EL  KEK++   +  + +  A+L DL+++  RL + 
Sbjct:   668 SVVEKEVWERDVLLAKQETEKQVKELGEKEKKIKEWRAKMTEMAAKLGDLDMKRARLHKS 727

Query:   436 IQATQSKVTKFSQKSLADEIL 456
                  SKV KF  K L   IL
Sbjct:   728 FTFLSSKVDKFQGKPLLQGIL 748

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TAIR|locus:2046992 AT2G20950 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
 Identities = 78/217 (35%), Positives = 123/217 (56%)

Query:   238 PSPADGSRNFSFSGIDLASG--DSDDEEAQSVISDS-VSVGKYHVRAXXXXXXXXXXXRY 294
             P   D S++F+   I    G      EE Q  IS++ VSV  Y VR            ++
Sbjct:   311 PELPDESQSFTMQEIARMRGLQSYGKEEIQLAISETYVSVANYKVRMSIAATLEAIIDKH 370

Query:   295 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVD 354
             GDIAA+  L+S S R++YLE L + V EL+ST+L  +TK +V E+ AV+KD++S +IDV 
Sbjct:   371 GDIAASSKLQSTSTRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVS 430

Query:   355 WLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKES 414
             WL+  + E++EA+E+  ++ T    +  C   + + KKE+E    EL  +EKE    +E 
Sbjct:   431 WLKTAVTELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRREKETKECRER 490

Query:   415 VAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL 451
             V +   RL  LE++  R+++ ++  +SKV KF   S+
Sbjct:   491 VTELAGRLGQLEMKDVRVKKNLELYESKVLKFDGHSV 527

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2121169 AT4G38560 "AT4G38560" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
 Identities = 75/195 (38%), Positives = 112/195 (57%)

Query:   262 EEAQSVISDS-VSVGKYHVRAXXXXXXXXXXXRYGDIAANCNLESNSMRAYYLECLCSVV 320
             EE +S+IS+S VSVG Y VRA           ++GDIA+   L+S   ++Y LE L +VV
Sbjct:   328 EEMKSMISESYVSVGSYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVV 387

Query:   321 QELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAK 380
              ELQST L ++ +A+V EM++V+ D ES +I   WLR ILNEI EA      H+T    K
Sbjct:   388 LELQSTPLKKLKQARVLEMLSVVIDAESVKIRAGWLREILNEILEAAHHYDGHETTVVEK 447

Query:   381 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 440
                   +   ++E++    E+ LKEKE    ++ V +   RL +L+++  RLE+ +    
Sbjct:   448 EGRERDMLLEREEMKKIQEEVRLKEKEAKDFRKGVMEMAGRLGELKMKRARLEKRLAFLS 507

Query:   441 SKVTKFSQKSLADEI 455
             SKV KF  +SL + +
Sbjct:   508 SKVEKFEGESLLENV 522

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2147937 AT5G11140 "AT5G11140" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 72/188 (38%), Positives = 113/188 (60%)

Query:   270 DSVSVGKYHVRAXXXXXXXXXXXRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLM 329
             D VSVG+Y V+A           +YGDI +N  L+S S R Y+LE L  VV ELQST L 
Sbjct:    55 DVVSVGEYKVKASLSSTLQSIFDKYGDITSNSKLQSLSTRTYHLETLAEVVIELQSTPLR 114

Query:   330 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE-FSTQHQTIDAAKANCVNLLE 388
             ++++++  E++A++ D+E+A+I V WLR++L E+ EA   F      +   KA    LL 
Sbjct:   115 RLSESRATEILAIVDDIETAKIRVGWLRSVLEEVLEATRYFDRCEMAVMEKKAGEHRLLL 174

Query:   389 STKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 448
             + K+E+E  + +LA KEKE+   +E + KT  +L  LE++   L++ +   +SKV KF  
Sbjct:   175 A-KQEMELSLKKLAEKEKEMKEFREKLMKTTGKLGSLEMKRTCLDKRLVFLRSKVEKFQG 233

Query:   449 KSLADEIL 456
             +S+  +IL
Sbjct:   234 QSVFQDIL 241

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085385 AT3G58270 "AT3G58270" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 56/217 (25%), Positives = 105/217 (48%)

Query:   219 KVQAPIEIHHST-----EDGGEDIPSPADGSRNFSFSGIDLASG-DSDD--EEAQSVISD 270
             K+  P+E   +T     E    D+P  ++ +   + S +D   G +S+D  +EA SV  +
Sbjct:   139 KLDVPVESEETTTKALSELEENDVPEESEETTK-ALSKVDENDGAESNDSLKEASSV-KE 196

Query:   271 SVSVGKYHVRAXXXXXXXXXXXRYGDIAANCNLESNSMRAYYLECLCSVVQEL-QSTSLM 329
             S+ V  + V             R+ DIA+    ++  +R+ Y+  L S+++ + QST   
Sbjct:   197 SMDVNGFRVLPSQVETVSCIFERHPDIASEFGPKNQHLRSAYMNVLLSLIKTMCQSTQ-- 254

Query:   330 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLES 389
             +++K  + +  A L  +  A ++++WL   L E+SE      + +  +A +   V+ +E 
Sbjct:   255 ELSKDDLSDADAALAYLTDAGLNLNWLEEKLEEVSE------KKENEEAGETR-VHEIEE 307

Query:   390 TKKELESQMNEL-ALKEKEVAGLKESVAKTKARLSDL 425
               KEL+ + + L A  EKE A +  SVA+      D+
Sbjct:   308 ELKELKLKCSNLEAQLEKEKADV--SVARAPFSFDDI 342

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085460 AT3G58220 "AT3G58220" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 73/318 (22%), Positives = 123/318 (38%)

Query:   121 AVDKVAVGGQKANGQHARSENYPKKKVES---ENGKSFS-RP-EHFSREIHPEDHSLNKE 175
             A  +++  G K   ++   E Y K+  E    E+ + +  RP E F  E   E     +E
Sbjct:   146 AAIEISEEGSKEGYEYESEEVYKKESEEGYKYESEEDYEKRPIERFEYESEAESKKDYEE 205

Query:   176 KVRSTQSVPPSENIKMNDMSKSPPK--ESVTSLPGASPSKNGKDNKVQAPIEIHH---ST 230
             + R       SE +   D  + P +  E  +       S+ G   + +   E      S 
Sbjct:   206 RTRGGFEYE-SEPVSKKDYEERPRESFEYESEAESKKDSEEGSRERYEYESEEESKKDSE 264

Query:   231 EDGGEDIPSPAD-GSR---NFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRAXXXXX 286
              D GE+    ++ GSR       +   + S DS ++  Q  + +++ +  + V       
Sbjct:   265 NDCGEESEKDSEEGSRPLKKIKRNDDGVKSNDSVNKTQQ--VKETMDINGFQVLPSQVTL 322

Query:   287 XXXXXXRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV 346
                   +Y DIA   N ++  +R   +  L S+++ L   S  +++   + E    L  V
Sbjct:   323 VSRILKKYPDIALGFNAKNRHLRTACMNVLISLIETL-CQSPQELSDEDMDEADNALVYV 381

Query:   347 ESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEK 406
             + A   VDWL   L E+ E        QT    K     L E  K+  +  ++  AL EK
Sbjct:   382 QDAGFKVDWLDKKLKEVKEK---KVVEQT---GKTRIQELEEELKEFKQKCLDREALLEK 435

Query:   407 EVAGLKESVAKTKARLSD 424
             E A  K   A+    L D
Sbjct:   436 EKA--KVLAARASLTLDD 451

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085325 AT3G58400 "AT3G58400" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 41/170 (24%), Positives = 83/170 (48%)

Query:   257 GDSDDEEAQSVISDSVSVGKYHVRAXXXXXXXXXXXRYGDIAANCNLESNSMRAYYLECL 316
             GD D  E  S + +++ V  + +             R+ +IA+  + +++S+R  Y+  L
Sbjct:   156 GDVDVSEGISTVKETIHVNGFQLLPSQAKSVSHIFERHPEIASEIHPKNSSLRTGYMSLL 215

Query:   317 CSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTI 376
              S+++ L S S  +++K  + ++   +  +++A   +DWL N L E++       Q +  
Sbjct:   216 LSLIETL-SQSPQELSKDDLCDVYIAIGCMKNAGFKLDWLENKLYEVA-------QKKED 267

Query:   377 DAAKANCVNLLESTKKELESQMNEL-ALKEKEVAGLKESVAKTKARLSDL 425
             D A    +  +E   K+L+ + +++ AL E+E A  K S AK      D+
Sbjct:   268 DEAGETRLREMEEKLKDLKLKCSKMEALVEEEKA--KVSAAKAHLSFDDV 315

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_IX0308 hypothetical protein (541 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	456
pfam05278	234	pfam05278, PEARLI-4, Arabidopsis phospholipase-lik	2e-65
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	0.002

>gnl|CDD|218534 pfam05278, PEARLI-4, Arabidopsis phospholipase-like protein (PEARLI 4)

 Score =  209 bits (534), Expect = 2e-65
 Identities = 99/193 (51%), Positives = 134/193 (69%), Gaps = 1/193 (0%)

Query: 263 EAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQ 321
           + QSV+SDS VSVGKY VRAS+S+ LQ+II ++GDIA+N  L+S S R+YYLECL SVVQ
Sbjct: 42  DLQSVMSDSYVSVGKYRVRASVSTTLQAIIDKHGDIASNSKLQSLSTRSYYLECLASVVQ 101

Query: 322 ELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKA 381
           ELQST L Q+++++VKEM+AV+KD+ES +I V WLR++L E +EA+E+  Q +T    K 
Sbjct: 102 ELQSTPLRQLSESRVKEMLAVVKDLESVKIRVGWLRSVLEEFAEAVEYFDQQETAVVEKE 161

Query: 382 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 441
                +   K+E+E Q  EL  KEKEV   +E V +   RL +LE++  RLE+ +    S
Sbjct: 162 RHERDVLLKKQEMEKQEAELVRKEKEVKEFREKVEEMAGRLGELEMKRLRLEKRLDFLGS 221

Query: 442 KVTKFSQKSLADE 454
           KV KF  KS  DE
Sbjct: 222 KVEKFKGKSFLDE 234

This family contains several phospholipase-like proteins from Arabidopsis thaliana which are homologous to PEARLI 4. Length = 234

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 1/129 (0%)

Query: 322 ELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF-STQHQTIDAAK 380
           E +   L    +   +E+ ++  ++ S +  ++ LR  L E+   +E    +   ++   
Sbjct: 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEEL 732

Query: 381 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 440
               + LE  ++ELE    EL   ++ +  L+E +   +  L+ L+ E   LE+  QA Q
Sbjct: 733 EQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ 792

Query: 441 SKVTKFSQK 449
            ++ +  ++
Sbjct: 793 EELEELEEE 801

Length = 1163

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 318 SVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTID 377
            V++ L    ++ +   K +     L+ + S    +    + L       + +   +   
Sbjct: 20  EVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLP--KLNPLREEKK 77

Query: 378 AAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 433
                 V  LE   K++E ++ ++   EKE+  L+E +++ +  + +LE E  RLE
Sbjct: 78  KVS---VKSLEELIKDVEEELEKI---EKEIKELEEEISELENEIKELEQEIERLE 127

Length = 646

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	456
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	100.0
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	99.72
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	98.03
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	92.66
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	92.5
PRK11637	428	AmiB activator; Provisional	92.22
COG4026	290	Uncharacterized protein containing TOPRIM domain,	91.07
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	89.46
PRK11637	428	AmiB activator; Provisional	89.05
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	88.91
PHA02562	562	46 endonuclease subunit; Provisional	87.25
PF10186	302	Atg14: UV radiation resistance protein and autopha	87.02
cd04776	118	HTH_GnyR Helix-Turn-Helix DNA binding domain of th	86.94
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.5
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	85.74
PRK04863	1486	mukB cell division protein MukB; Provisional	85.65
PHA02562	562	46 endonuclease subunit; Provisional	85.57
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.32
PRK13182	175	racA polar chromosome segregation protein; Reviewe	85.28
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	84.7
PRK02224	880	chromosome segregation protein; Provisional	84.47
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	84.37
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	84.3
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	84.1
COG4026	290	Uncharacterized protein containing TOPRIM domain,	83.87
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	83.84
PRK01156	895	chromosome segregation protein; Provisional	83.66
PRK02224	880	chromosome segregation protein; Provisional	83.56
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	83.46
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	83.15
PF04740	204	LXG: LXG domain of WXG superfamily; InterPro: IPR0	82.69
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	82.65
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	82.26
PF10186	302	Atg14: UV radiation resistance protein and autopha	81.83
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	81.72
COG3937	108	Uncharacterized conserved protein [Function unknow	81.62
PF05600	507	DUF773: Protein of unknown function (DUF773); Inte	81.6
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	80.92
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	80.8

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=100.00  E-value=1.4e-62  Score=478.31  Aligned_cols=216  Identities=50%  Similarity=0.738  Sum_probs=211.1

Q ss_pred             CCCCCCcceeeccccccCC---CCCcccccccccce-EEeccEEeeccchHHHHHHHhhcccccccCcccchhHHHHHHH
Q 012816          239 SPADGSRNFSFSGIDLASG---DSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLE  314 (456)
Q Consensus       239 ~~~~es~~Fs~~~i~~~~~---~~d~eE~~Svvset-v~VnGFqVl~Sqv~iV~~IFeKHpDIAsnf~lKs~~lRs~ymn  314 (456)
                      .-|++|++|||++|.+|.|   +++++|++|+++++ |+||||||++||++||++||+||||||+||+++|++||++||+
T Consensus        50 ~l~~~s~sftl~~~~~~~~~~~~~~~~e~~Sv~ses~V~VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe  129 (269)
T PF05278_consen   50 ELPDESQSFTLSEIECMKGLKTNEGDEEMSSVISESIVSVNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLE  129 (269)
T ss_pred             CCCCcCccccHHHHHHHhcccccccchhhhhccccceeeECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHH
Confidence            4678999999999999997   56778999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHH
Q 012816          315 CLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKEL  394 (456)
Q Consensus       315 ~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkEL  394 (456)
                      +||+||++||++|+++||++||.+|+++|.||++|||+|+|||++|+||.++++++++|++++++|++++|.++..+.||
T Consensus       130 ~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~EL  209 (269)
T PF05278_consen  130 CLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEEL  209 (269)
T ss_pred             HHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhh
Q 012816          395 ESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADE  454 (456)
Q Consensus       395 Ee~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~  454 (456)
                      ++++++|+++++++++++.||++|++||++||+++++|+++|.+++|||++|+||||+|+
T Consensus       210 e~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~sl~~~  269 (269)
T PF05278_consen  210 EELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKSLLDE  269 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence            999999999999999999999999999999999999999999999999999999999985

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.72  E-value=3.7e-17  Score=156.89  Aligned_cols=175  Identities=20%  Similarity=0.229  Sum_probs=132.1

Q ss_pred             CccccccccccccCCCCCCCCCCCCCcceeeccccccCCCCCccccc-c--cc-cceEEe----ccEEeeccchHHHHHH
Q 012816          219 KVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQ-S--VI-SDSVSV----GKYHVRASISSILQSI  290 (456)
Q Consensus       219 ~~~~~~p~~~~~~~~g~~~~~~~~es~~Fs~~~i~~~~~~~d~eE~~-S--vv-setv~V----nGFqVl~Sqv~iV~~I  290 (456)
                      |-..+.|++...+..|+++..  ++...|.-+.+....+..|..+.. +  .+ .+..++    |||+|+++|++++..|
T Consensus        94 g~~~~~~~~~~~~~~~g~~~~--~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~  171 (297)
T KOG1987|consen   94 GFGKMLPLTLLIDCSNGFLVA--HKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERI  171 (297)
T ss_pred             CcccccChHHhhcccCcEEEc--CceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHh
Confidence            335567777777777777655  334445444444433332221110 0  00 111334    9999999999999999


Q ss_pred             HhhcccccccCcccchhHHHHHHHHHHHHHHHHh--cchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH
Q 012816          291 ISRYGDIAANCNLESNSMRAYYLECLCSVVQELQ--STSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE  368 (456)
Q Consensus       291 FeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~--kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare  368 (456)
                      |++||++|+.|+.+++++|..||+.||++|++++  +++ +.++..++.+|..++.+++.+||+||||.++++++.++++
T Consensus       172 ~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k~~  250 (297)
T KOG1987|consen  172 FEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSL-QEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEKKK  250 (297)
T ss_pred             hcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccH-HHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999  877 9999999999999999999999999999999999998883


Q ss_pred             hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012816          369 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG  410 (456)
Q Consensus       369 ~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d  410 (456)
                                    .+...+.+.+++++++..+.++......
T Consensus       251 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (297)
T KOG1987|consen  251 --------------KDLWYEIRLQELEEELKSLKDKCSDLEG  278 (297)
T ss_pred             --------------HHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence                          1123556666667777777777666654

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=98.03  E-value=0.00031  Score=66.88  Aligned_cols=128  Identities=20%  Similarity=0.332  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHH
Q 012816          311 YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLEST  390 (456)
Q Consensus       311 ~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~  390 (456)
                      ..|=+..+|++...+.-+.+ +...+..-..+|.+|+.-||+|.-|+.||+++...+.   .+..+.+..+..+..++..
T Consensus        47 Glm~~f~~l~e~v~~l~idd-~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~---~~~~~~e~~k~le~~~~~~  122 (190)
T PF05266_consen   47 GLMVTFANLAEKVKKLQIDD-SRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKD---DQEKLLEERKKLEKKIEEK  122 (190)
T ss_pred             HHHHHHHHHHHHHHHcccCC-cHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHH
Confidence            45677788888888888444 8999999999999999999999999999999886662   2222222222222222222


Q ss_pred             ---HHHHHHHHHHHHHHHHHHhhh----HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 012816          391 ---KKELESQMNELALKEKEVAGL----KESVAKTKARLSDLELESNRLEQIIQATQSK  442 (456)
Q Consensus       391 ---kkELEe~l~eL~qKekev~d~----~~rv~e~k~RL~~LE~ess~L~~~v~~~kSK  442 (456)
                         .+++|+.+.+|.++-.++.+.    +..-++....+.+|+-+...|.+.+.+++.+
T Consensus       123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~  181 (190)
T PF05266_consen  123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE  181 (190)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               234444444444443333331    1123334455666666666666666655543

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=92.66  E-value=5  Score=40.89  Aligned_cols=53  Identities=30%  Similarity=0.456  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHh
Q 012816          387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT  439 (456)
Q Consensus       387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~  439 (456)
                      ++.++++|.+.-.+|..+.+++.+.+.++.++.+.+..+..+...+...|..+
T Consensus       211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~  263 (325)
T PF08317_consen  211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA  263 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444454444444444444444444444444444444443333333333333

>smart00787 Spc7 Spc7 kinetochore protein

Probab=92.50  E-value=5.6  Score=40.92  Aligned_cols=66  Identities=20%  Similarity=0.365  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccch
Q 012816          386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL  451 (456)
Q Consensus       386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl  451 (456)
                      .+..++.+|.+...++..+.+++.+.+.++.+...++.....+-..+...|..+.+.+++-.+.+.
T Consensus       205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~  270 (312)
T smart00787      205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTF  270 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            344555666666666666666666666666666666666666666666666667766666666554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK11637 AmiB activator; Provisional

Probab=92.22  E-value=6.4  Score=41.21  Aligned_cols=84  Identities=20%  Similarity=0.330  Sum_probs=44.9

Q ss_pred             hhhHHHHHHHHHHh-hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHhHHHHHHHHHHHHHhhh
Q 012816          356 LRNILNEISEAIEF-STQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE----VAGLKESVAKTKARLSDLELESN  430 (456)
Q Consensus       356 LekKLeEV~Eare~-~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKeke----v~d~~~rv~e~k~RL~~LE~ess  430 (456)
                      -...|+++...++- ....+.++.++    ..++...++++.+..+|....++    +..++..+.+....|.+|+....
T Consensus       168 d~~~l~~l~~~~~~L~~~k~~le~~~----~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~  243 (428)
T PRK11637        168 RQETIAELKQTREELAAQKAELEEKQ----SQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANES  243 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666555532 22222222222    23344445555555555444444    55566666666777778887777


Q ss_pred             hHHHHHHHhhhhh
Q 012816          431 RLEQIIQATQSKV  443 (456)
Q Consensus       431 ~L~~~v~~~kSKV  443 (456)
                      +|.+.|..++-..
T Consensus       244 ~L~~~I~~l~~~~  256 (428)
T PRK11637        244 RLRDSIARAEREA  256 (428)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777776655433

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=91.07  E-value=1.6  Score=43.83  Aligned_cols=62  Identities=23%  Similarity=0.243  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 012816          387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ  448 (456)
Q Consensus       387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~  448 (456)
                      +++..+|-++.+++|.+++.++.+.++|+..++..+++|+.+..+|.--+.+++-+.+.+..
T Consensus       144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~  205 (290)
T COG4026         144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP  205 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence            33444455556677777777777777788888888888877777766556666666655533

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=89.46  E-value=6.5  Score=47.44  Aligned_cols=51  Identities=4%  Similarity=0.114  Sum_probs=41.7

Q ss_pred             hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHH
Q 012816          329 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAA  379 (456)
Q Consensus       329 ~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~e  379 (456)
                      -.+++.+|..+...+..|++..=+|+=|+.++..+.+....++.+......
T Consensus       215 ~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~  265 (1353)
T TIGR02680       215 PPLDDDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLR  265 (1353)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            679999999999999999998888888888888888777766666664333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK11637 AmiB activator; Provisional

Probab=89.05  E-value=12  Score=39.20  Aligned_cols=15  Identities=13%  Similarity=0.131  Sum_probs=6.2

Q ss_pred             hHHHHHHHHHHHHHH
Q 012816          307 SMRAYYLECLCSVVQ  321 (456)
Q Consensus       307 ~lRs~ymn~Ll~LIe  321 (456)
                      .+|-..+-+|+.++-
T Consensus        19 ~~~~~~~~~ll~~~~   33 (428)
T PRK11637         19 AIRPILYASVLSAGV   33 (428)
T ss_pred             hhhhHHHHHHHHHHH
Confidence            344444444444333

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=88.91  E-value=5.1  Score=36.61  Aligned_cols=37  Identities=14%  Similarity=0.411  Sum_probs=26.9

Q ss_pred             HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 012816          412 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ  448 (456)
Q Consensus       412 ~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~  448 (456)
                      ++.+.++++-+.++..+...+...|..|..|+...++
T Consensus        88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~  124 (126)
T PF07889_consen   88 KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE  124 (126)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3466777777777777777777777778888776654

The region featured in this family is approximately 100 amino acids long.

>PHA02562 46 endonuclease subunit; Provisional

Probab=87.25  E-value=14  Score=39.14  Aligned_cols=40  Identities=15%  Similarity=0.224  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhh
Q 012816          391 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESN  430 (456)
Q Consensus       391 kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess  430 (456)
                      +..+++...++...+.++..+..+..+...+|.+|+.+..
T Consensus       350 ~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~  389 (562)
T PHA02562        350 KQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD  389 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence            3333333333344444444443333333334444333333

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=87.02  E-value=12  Score=35.95  Aligned_cols=12  Identities=42%  Similarity=0.496  Sum_probs=6.5

Q ss_pred             hhhhhHHHHHHH
Q 012816          354 DWLRNILNEISE  365 (456)
Q Consensus       354 DWLekKLeEV~E  365 (456)
                      +=|+.+++++.+
T Consensus        37 ~~l~~~i~~~l~   48 (302)
T PF10186_consen   37 EELRRRIEEILE   48 (302)
T ss_pred             HHHHHHHHHHHH
Confidence            445555555554

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR

Probab=86.94  E-value=8.9  Score=33.73  Aligned_cols=31  Identities=10%  Similarity=0.229  Sum_probs=20.4

Q ss_pred             hhccHHHHHHHHHHHhHHHhcCcchhhhhhHH
Q 012816          329 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNIL  360 (456)
Q Consensus       329 ~eLS~~dL~ea~~~L~dL~~agfKVDWLekKL  360 (456)
                      +-.+.++|..+..+.. |++.||-|+=.+.-|
T Consensus        35 R~Y~~~~l~~l~~I~~-lr~~G~~L~~I~~~l   65 (118)
T cd04776          35 RVYSRRDRARLKLILR-GKRLGFSLEEIRELL   65 (118)
T ss_pred             cccCHHHHHHHHHHHH-HHHCCCCHHHHHHHH
Confidence            5677778776655544 888999765444443

Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.50  E-value=8.2  Score=43.93  Aligned_cols=128  Identities=16%  Similarity=0.254  Sum_probs=59.6

Q ss_pred             eeccchHHHHHHHhhccc--cc---ccCcccchhHHHHHHHHHHHHHHHHhcchh--hhccHHHHHHHHHHHhHHHhcCc
Q 012816          279 VRASISSILQSIISRYGD--IA---ANCNLESNSMRAYYLECLCSVVQELQSTSL--MQMTKAKVKEMMAVLKDVESAQI  351 (456)
Q Consensus       279 Vl~Sqv~iV~~IFeKHpD--IA---snf~lKs~~lRs~ymn~Ll~LIetL~kspl--~eLS~~dL~ea~~~L~dL~~agf  351 (456)
                      ..+++...++.||.+-..  |.   ++ +...+.- .-.+++|..-++.|..--+  +++-..+|..-...|....+.++
T Consensus       501 ~~~sF~~~Ik~lL~r~~~qPill~s~~-k~~~p~~-~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql  578 (717)
T PF10168_consen  501 SPPSFEKHIKSLLQRSSSQPILLKSSD-KSSSPSP-QECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQL  578 (717)
T ss_pred             ccchHHHHHHHHhcCCCCCCeecCCCc-cccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            358888889999886421  22   22 1122221 2245667777777754322  23444555555555666555433


Q ss_pred             chhhhhhH---HHHHHHH-HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012816          352 DVDWLRNI---LNEISEA-IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG  410 (456)
Q Consensus       352 KVDWLekK---LeEV~Ea-re~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d  410 (456)
                        +||..-   .+.|.+. .++.+++..+.+..+...++++.+.+.+...+-.|...|.++++
T Consensus       579 --~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~  639 (717)
T PF10168_consen  579 --KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKK  639 (717)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence              333222   2222211 12333444444444444444444444444433344444444433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=85.74  E-value=32  Score=39.36  Aligned_cols=48  Identities=15%  Similarity=0.097  Sum_probs=25.0

Q ss_pred             EEeccEEeeccchHHHHHHHhhccccc-----------ccCcccchhHHHHHHHHHHHHHHH
Q 012816          272 VSVGKYHVRASISSILQSIISRYGDIA-----------ANCNLESNSMRAYYLECLCSVVQE  322 (456)
Q Consensus       272 v~VnGFqVl~Sqv~iV~~IFeKHpDIA-----------snf~lKs~~lRs~ymn~Ll~LIet  322 (456)
                      ..+||-.|.   ..-+..+|...+=..           ..|...++.-|..|++-+.++...
T Consensus       110 ~~~n~~~~~---~~~~~~~l~~~~~~~~~~~~~~qg~~~~~~~~~~~~r~~~~~~~~g~~~~  168 (1164)
T TIGR02169       110 YYLNGQRVR---LSEIHDFLAAAGIYPEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAEF  168 (1164)
T ss_pred             EEECCcccc---HHHHHHHHHHcCCCcCcceEEecchHHHHHCCCHHHHHHHHHHHhCHHHH
Confidence            567776563   344566665544111           122333566666677777664433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=85.65  E-value=29  Score=42.86  Aligned_cols=155  Identities=15%  Similarity=0.207  Sum_probs=72.8

Q ss_pred             EEeeccchHHHHHHHhh-cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhc--cHHHHHHHHHHHhHHHhcCcch
Q 012816          277 YHVRASISSILQSIISR-YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQM--TKAKVKEMMAVLKDVESAQIDV  353 (456)
Q Consensus       277 FqVl~Sqv~iV~~IFeK-HpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eL--S~~dL~ea~~~L~dL~~agfKV  353 (456)
                      .+|-.+.-...+++|.. -..+|+.| ++++.=|-..++-.+++=+.+...- ..|  ++..|..+...|          
T Consensus       249 ~~~tq~drdlFk~lI~~~~~~~aad~-~r~~eERR~liEEAag~r~rk~eA~-kkLe~tE~nL~rI~diL----------  316 (1486)
T PRK04863        249 IRVTQSDRDLFKHLITESTNYVAADY-MRHANERRVHLEEALELRRELYTSR-RQLAAEQYRLVEMAREL----------  316 (1486)
T ss_pred             HHhCccHHHHHHHHhhhhhhhhHHHH-hhCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----------
Confidence            34445556666666654 35677777 6666666666666655444433332 111  222223333333          


Q ss_pred             hhhhhHHHHHHHHHHhhhhhhhHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 012816          354 DWLRNILNEISEAIEFSTQHQTIDAAKAN-------CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE  426 (456)
Q Consensus       354 DWLekKLeEV~Eare~~~~~~~~e~eKe~-------~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE  426 (456)
                      .=|..+|..+....+-+.++..+..+...       ....++++..++++....|.+.+.++.+..+++.++.+++.+|+
T Consensus       317 ~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLq  396 (1486)
T PRK04863        317 AELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK  396 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23344555554444444444444333111       12233333444444444444444444444445555555555555


Q ss_pred             HhhhhHHHHHHHhhhhh
Q 012816          427 LESNRLEQIIQATQSKV  443 (456)
Q Consensus       427 ~ess~L~~~v~~~kSKV  443 (456)
                      .+..++.+.+..++.++
T Consensus       397 eqLaelqqel~elQ~el  413 (1486)
T PRK04863        397 SQLADYQQALDVQQTRA  413 (1486)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444443

>PHA02562 46 endonuclease subunit; Provisional

Probab=85.57  E-value=13  Score=39.56  Aligned_cols=95  Identities=13%  Similarity=0.208  Sum_probs=41.6

Q ss_pred             hcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHhHHHHHH
Q 012816          348 SAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALK-------EKEVAGLKESVAKTKA  420 (456)
Q Consensus       348 ~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qK-------ekev~d~~~rv~e~k~  420 (456)
                      .+.-++++|+..+.++....+-+..+  ++..+......+..+++++++...+..+.       +.++.+++..+.+..+
T Consensus       178 e~~~~i~~l~~~i~~l~~~i~~~~~~--i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~  255 (562)
T PHA02562        178 ELNQQIQTLDMKIDHIQQQIKTYNKN--IEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSA  255 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence            44555667777777766555322111  11111111122333344444433333333       3333333334344444


Q ss_pred             HHHHHHHhhhhHHHHHHHhhhhhh
Q 012816          421 RLSDLELESNRLEQIIQATQSKVT  444 (456)
Q Consensus       421 RL~~LE~ess~L~~~v~~~kSKV~  444 (456)
                      .|..++....+++..+..++.-..
T Consensus       256 ~L~~l~~~~~~~~~~l~~~~~~~~  279 (562)
T PHA02562        256 ALNKLNTAAAKIKSKIEQFQKVIK  279 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555544443333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.32  E-value=8.8  Score=43.65  Aligned_cols=59  Identities=20%  Similarity=0.254  Sum_probs=31.2

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHh
Q 012816          381 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT  439 (456)
Q Consensus       381 e~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~  439 (456)
                      +...+.+..++.+++.++++|.+.+.+.++++++-+.+.+|+.++.+.-..|.+++..+
T Consensus       561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v  619 (717)
T PF10168_consen  561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV  619 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334555555555555555555555555555555555555555555555555544433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK13182 racA polar chromosome segregation protein; Reviewed

Probab=85.28  E-value=8.1  Score=36.82  Aligned_cols=134  Identities=12%  Similarity=0.150  Sum_probs=70.6

Q ss_pred             ccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH-HHHHHHHhhhhh
Q 012816          295 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN-EISEAIEFSTQH  373 (456)
Q Consensus       295 pDIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLe-EV~Eare~~~~~  373 (456)
                      +++|.-+.+....+|.+|=.-++. +..-.. --+.++++|| .....+..+..+|+.+.=++...- ++....=.....
T Consensus         4 ~evA~~lGVS~~TLRrw~k~g~L~-~~R~~~-G~R~y~~~dl-~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~   80 (175)
T PRK13182          4 PFVAKKLGVSPKTVQRWVKQLNLP-CEKNEY-GHYIFTEEDL-QLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQ   80 (175)
T ss_pred             HHHHHHHCcCHHHHHHHHHcCCCC-CCcCCC-CCEEECHHHH-HHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCC
Confidence            355666666666777776655543 111111 2477899999 789999999999997765544210 100000000111


Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHhHHHHHHHHHHHHHhhhhHHHH
Q 012816          374 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGL---------KESVAKTKARLSDLELESNRLEQI  435 (456)
Q Consensus       374 ~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~---------~~rv~e~k~RL~~LE~ess~L~~~  435 (456)
                      .++.+..    ..++...+.+++.+.+|.+.....+|.         |..++||..+|..||....++++.
T Consensus        81 ~t~~~R~----~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~  147 (175)
T PRK13182         81 NISSVDF----EQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPI  147 (175)
T ss_pred             ccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1111111    123333344444444444444444431         456677777777777776666553

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=84.70  E-value=10  Score=38.90  Aligned_cols=78  Identities=21%  Similarity=0.303  Sum_probs=64.5

Q ss_pred             hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 012816          371 TQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ  448 (456)
Q Consensus       371 ~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~  448 (456)
                      +++......-.++-.+....++||+.|-+.+...|++...|+.+-..+-.-|..+-.+...+.+-+..++-|+++..+
T Consensus       223 ~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~  300 (309)
T PF09728_consen  223 EKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK  300 (309)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333443333333445788889999999999999999999999999999999999999999999999999999887643

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PRK02224 chromosome segregation protein; Provisional

Probab=84.47  E-value=15  Score=41.55  Aligned_cols=33  Identities=15%  Similarity=0.172  Sum_probs=18.3

Q ss_pred             HHHHHHhhcccccccCcccchhHHHHHHHHHHHH
Q 012816          286 ILQSIISRYGDIAANCNLESNSMRAYYLECLCSV  319 (456)
Q Consensus       286 iV~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~L  319 (456)
                      +.+.||-..|+|..=+ -.+|.=|...+.=|++|
T Consensus       129 f~~~~~i~Qge~~~~l-~~~p~~R~~ii~~l~~l  161 (880)
T PRK02224        129 FVNCAYVRQGEVNKLI-NATPSDRQDMIDDLLQL  161 (880)
T ss_pred             hcceeEeeccChHHHH-cCCHHHHHHHHHHHhCC
Confidence            3444555666664433 34555666666666664

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=84.37  E-value=14  Score=38.07  Aligned_cols=54  Identities=20%  Similarity=0.263  Sum_probs=45.7

Q ss_pred             hhHHHHHHHHH-HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012816          357 RNILNEISEAI-EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG  410 (456)
Q Consensus       357 ekKLeEV~Ear-e~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d  410 (456)
                      +..|.||-|+- +-+-..++|+.+|.+.--.+..++++|+++.+.|++..++..+
T Consensus        83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e  137 (302)
T PF09738_consen   83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE  137 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788887764 5566788999999998888999999999999999999988865

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=84.30  E-value=27  Score=34.09  Aligned_cols=11  Identities=18%  Similarity=0.157  Sum_probs=4.1

Q ss_pred             cchhhhhhHHH
Q 012816          351 IDVDWLRNILN  361 (456)
Q Consensus       351 fKVDWLekKLe  361 (456)
                      -+|.-++..|+
T Consensus       120 rkl~~~E~~Le  130 (237)
T PF00261_consen  120 RKLKVLEQELE  130 (237)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=84.10  E-value=51  Score=37.53  Aligned_cols=21  Identities=14%  Similarity=0.123  Sum_probs=10.1

Q ss_pred             EEeccEEeeccchHHHHHHHhhcc
Q 012816          272 VSVGKYHVRASISSILQSIISRYG  295 (456)
Q Consensus       272 v~VnGFqVl~Sqv~iV~~IFeKHp  295 (456)
                      ..+||..+...   -|..+|...|
T Consensus       112 ~~~~~~~~~~~---~~~~~l~~~~  132 (1179)
T TIGR02168       112 YFINGQPCRLK---DIQDLFLDTG  132 (1179)
T ss_pred             eeECCCcccHH---HHHHHHhccC
Confidence            44666655222   2455555543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=83.87  E-value=15  Score=37.18  Aligned_cols=12  Identities=17%  Similarity=0.324  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHH
Q 012816          308 MRAYYLECLCSV  319 (456)
Q Consensus       308 lRs~ymn~Ll~L  319 (456)
                      +-.-|-+-|-++
T Consensus        74 LA~kf~eeLrg~   85 (290)
T COG4026          74 LAEKFFEELRGM   85 (290)
T ss_pred             HHHHHHHHHHHh
Confidence            333344444333

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=83.84  E-value=20  Score=30.53  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=11.8

Q ss_pred             HHhHHHHHHHHHHHHHhhhhHHHHH
Q 012816          412 KESVAKTKARLSDLELESNRLEQII  436 (456)
Q Consensus       412 ~~rv~e~k~RL~~LE~ess~L~~~v  436 (456)
                      .+++.+++..|..||.....++..+
T Consensus        73 ~~e~~~lk~~i~~le~~~~~~e~~l   97 (108)
T PF02403_consen   73 KAEVKELKEEIKELEEQLKELEEEL   97 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555444444433

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PRK01156 chromosome segregation protein; Provisional

Probab=83.66  E-value=20  Score=40.73  Aligned_cols=23  Identities=9%  Similarity=0.068  Sum_probs=9.4

Q ss_pred             HHhHHHhcCcchhhhhhHHHHHH
Q 012816          342 VLKDVESAQIDVDWLRNILNEIS  364 (456)
Q Consensus       342 ~L~dL~~agfKVDWLekKLeEV~  364 (456)
                      .+..++..-=++.+++.++.++.
T Consensus       320 ~l~~~e~~~~~~e~~~~~~~e~~  342 (895)
T PRK01156        320 EINKYHAIIKKLSVLQKDYNDYI  342 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444443

>PRK02224 chromosome segregation protein; Provisional

Probab=83.56  E-value=27  Score=39.50  Aligned_cols=11  Identities=9%  Similarity=0.211  Sum_probs=4.3

Q ss_pred             hhhHHHHHHHH
Q 012816          356 LRNILNEISEA  366 (456)
Q Consensus       356 LekKLeEV~Ea  366 (456)
                      |+.+++.+...
T Consensus       494 ~~~~~e~l~~~  504 (880)
T PRK02224        494 VEERLERAEDL  504 (880)
T ss_pred             HHHHHHHHHHH
Confidence            33344433333

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.46  E-value=7.6  Score=41.02  Aligned_cols=57  Identities=25%  Similarity=0.260  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816          386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK  445 (456)
Q Consensus       386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k  445 (456)
                      ++++....+..++++|++-+++++.-..++.+++++   ||-+...|.+.++-|++||+.
T Consensus       222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~et---LEqq~~~L~~niDIL~~k~~e  278 (365)
T KOG2391|consen  222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKET---LEQQLQSLQKNIDILKSKVRE  278 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHH
Confidence            344444444455566666666666644444444443   345555666666666666665

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=83.15  E-value=44  Score=34.19  Aligned_cols=47  Identities=28%  Similarity=0.377  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHH
Q 012816          387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE  433 (456)
Q Consensus       387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~  433 (456)
                      +.....+|+..-.+|.+.+.++..+..+|.+..++..++..+-..++
T Consensus       218 L~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  218 LAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444443

>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein

Probab=82.69  E-value=41  Score=31.26  Aligned_cols=54  Identities=24%  Similarity=0.348  Sum_probs=33.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcC---cchhhhhhHH
Q 012816          305 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQ---IDVDWLRNIL  360 (456)
Q Consensus       305 s~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~ag---fKVDWLekKL  360 (456)
                      --..|++|-++.+-||+.|...- .++.. .|......+.++....   ++-++|+.-|
T Consensus        48 ~dsiK~y~~~vh~pll~~~~~~~-~~~~~-~l~~~~~~~~~vd~~~~a~i~e~~L~~el  104 (204)
T PF04740_consen   48 YDSIKNYFSEVHIPLLQGLILLL-EEYQE-ALKFIKDFQSEVDSSSNAIIDEDFLESEL  104 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHhHHHHHHHHcccccccccHHHHHHHH
Confidence            34677788887777777776554 33333 3355555555565433   8888888444

However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=82.65  E-value=37  Score=34.21  Aligned_cols=16  Identities=31%  Similarity=0.322  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHhhhh
Q 012816          416 AKTKARLSDLELESNR  431 (456)
Q Consensus       416 ~e~k~RL~~LE~ess~  431 (456)
                      .+.+++|.+++.....
T Consensus       127 ~~l~~~~~~~e~~~~e  142 (239)
T COG1579         127 EDLKERLERLEKNLAE  142 (239)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=82.26  E-value=42  Score=31.04  Aligned_cols=56  Identities=25%  Similarity=0.334  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 012816          386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS  441 (456)
Q Consensus       386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kS  441 (456)
                      .+...+...+.+.+++...++++.+.+.++.+.+..+.++......+.+.+.+.++
T Consensus       131 ~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  186 (191)
T PF04156_consen  131 RLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE  186 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444555555666777777777776666666666655544

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=81.83  E-value=27  Score=33.70  Aligned_cols=19  Identities=16%  Similarity=0.370  Sum_probs=7.9

Q ss_pred             HHhcCcchhhhhhHHHHHH
Q 012816          346 VESAQIDVDWLRNILNEIS  364 (456)
Q Consensus       346 L~~agfKVDWLekKLeEV~  364 (456)
                      +.....++.+|+.+++++.
T Consensus        65 ~~~~~~r~~~l~~~i~~~~   83 (302)
T PF10186_consen   65 IEELRERLERLRERIERLR   83 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=81.72  E-value=17  Score=40.39  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=10.4

Q ss_pred             HhHHHHHHHHHHHHHhhhhHHH
Q 012816          413 ESVAKTKARLSDLELESNRLEQ  434 (456)
Q Consensus       413 ~rv~e~k~RL~~LE~ess~L~~  434 (456)
                      .+.++.+.|+.+||.....|.+
T Consensus       213 ~q~~e~~~ri~~LEedi~~l~q  234 (546)
T PF07888_consen  213 EQLAEARQRIRELEEDIKTLTQ  234 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555544444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG3937 Uncharacterized conserved protein [Function unknown]

Probab=81.62  E-value=11  Score=34.01  Aligned_cols=38  Identities=24%  Similarity=0.436  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHH-HHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 012816          392 KELESQMNELA-LKEKEVAGLKESVAKTKARLSDLELES  429 (456)
Q Consensus       392 kELEe~l~eL~-qKekev~d~~~rv~e~k~RL~~LE~es  429 (456)
                      +.|+.++.++. ..+.+|.+.++||.+.+.++..||.+.
T Consensus        68 r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~  106 (108)
T COG3937          68 RKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKL  106 (108)
T ss_pred             HHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555554444 334566677788888888888887654

>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown

Probab=81.60  E-value=24  Score=38.73  Aligned_cols=31  Identities=19%  Similarity=0.248  Sum_probs=25.2

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhcchhhhcc
Q 012816          301 CNLESNSMRAYYLECLCSVVQELQSTSLMQMT  332 (456)
Q Consensus       301 f~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS  332 (456)
                      ..+.|+.+|+.+|+=|+.|--.|.+-- .+++
T Consensus       345 tlLe~~~~R~~fldeL~EL~aFL~qRl-~El~  375 (507)
T PF05600_consen  345 TLLENPETRNQFLDELLELEAFLKQRL-YELS  375 (507)
T ss_pred             hhcCCHhHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            568899999999999999977776644 5665

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=80.92  E-value=27  Score=34.08  Aligned_cols=7  Identities=43%  Similarity=0.553  Sum_probs=2.6

Q ss_pred             hhhHHHH
Q 012816          356 LRNILNE  362 (456)
Q Consensus       356 LekKLeE  362 (456)
                      |+.+|.+
T Consensus        97 lE~~l~e  103 (237)
T PF00261_consen   97 LEQQLKE  103 (237)
T ss_dssp             CHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=80.80  E-value=38  Score=40.31  Aligned_cols=102  Identities=14%  Similarity=0.160  Sum_probs=57.9

Q ss_pred             EEeccEEeeccchHHHHHHHhh------------cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHH
Q 012816          272 VSVGKYHVRASISSILQSIISR------------YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEM  339 (456)
Q Consensus       272 v~VnGFqVl~Sqv~iV~~IFeK------------HpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea  339 (456)
                      ..|||-.|..+   -+..+|..            -|+|..=...+....|. |++=..++...-..      -+.=....
T Consensus       112 Y~INg~~~~~~---dI~~l~~~~gi~~~~~~iV~QG~V~~i~~~kp~err~-iiEEaaGv~~y~~r------~~ea~~~L  181 (1163)
T COG1196         112 YYINGEKVRLK---DIQDLLADSGIGKESYSIVSQGKVEEIINAKPEERRK-LIEEAAGVSKYKER------KEEAERKL  181 (1163)
T ss_pred             EEECCcEeeHH---HHHHHHHhcCCCCCCCceeecccHHHHHcCCHHHHHH-HHHHHhchHHHHHH------HHHHHHHH
Confidence            66777777665   23333332            24444444455555554 66666665543221      11222333


Q ss_pred             HHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhh
Q 012816          340 MAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANC  383 (456)
Q Consensus       340 ~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~  383 (456)
                      ..+..-|......++=|+++|+.+...++.+..+++++.++...
T Consensus       182 ~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~  225 (1163)
T COG1196         182 ERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELREL  225 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444455566778888888888888888888887776544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	456
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 49/386 (12%), Positives = 103/386 (26%), Gaps = 117/386 (30%)

Query: 117 LTPRAVDKVAVGGQKANGQHARS-----ENYPKKKVESENGKSFSRPEHFSREIHPEDHS 171
           L+   +D +     K              +  ++ V+            F  E+   ++ 
Sbjct: 46  LSKEEIDHII--MSKDAVSGTLRLFWTLLSKQEEMVQK-----------FVEEVLRINYK 92

Query: 172 LNKEKVRSTQSVPPSENIKM---------NDMSKSPP-----KESVTSLPGA----SPSK 213
                ++ T+   PS   +M         ND            +    L  A     P+K
Sbjct: 93  FLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 214 NGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGID-LASGDSDDEEAQSVISDSV 272
           N         + I       G               SG   +A       + Q  +   +
Sbjct: 152 N---------VLIDG---VLG---------------SGKTWVALDVCLSYKVQCKMDFKI 184

Query: 273 ---SVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLM 329
              ++   +   ++  +LQ ++ +   I  N    S+      L         +Q+    
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRI-----HSIQAELRR 236

Query: 330 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTI----DAAKANCVN 385
            +     +  + VL +V++A+    W          A  F+   + +         + ++
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKA---W---------NA--FNLSCKILLTTRFKQVTDFLS 282

Query: 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES---------------- 429
              +T   +    + + L   EV  L       +    DL  E                 
Sbjct: 283 --AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--QDLPREVLTTNPRRLSIIAESIR 338

Query: 430 ---NRLEQIIQATQSKVTKFSQKSLA 452
                 +        K+T   + SL 
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLN 364

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	456
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.16
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	91.03
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.87
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	89.98
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	89.94
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	87.62
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	87.61
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	87.47
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	86.34
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	86.31
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	84.63
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	82.32
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	81.69

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.16  E-value=1.2  Score=45.42  Aligned_cols=55  Identities=18%  Similarity=0.277  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 012816          389 STKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV  443 (456)
Q Consensus       389 ~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV  443 (456)
                      ..+++++++.+++...++++.+++.+++++++++.++..+.+.+.+-+..+..|+
T Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344455555666666667777777777778888777777777655444444443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=91.03  E-value=3.4  Score=36.05  Aligned_cols=19  Identities=32%  Similarity=0.335  Sum_probs=7.2

Q ss_pred             hHHHHHHHHHHHHHhhhhH
Q 012816          414 SVAKTKARLSDLELESNRL  432 (456)
Q Consensus       414 rv~e~k~RL~~LE~ess~L  432 (456)
                      ++..+..++..++.+...+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~  102 (284)
T 1c1g_A           84 DVASLNRRIQLFEEELDRA  102 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.87  E-value=1.9  Score=49.06  Aligned_cols=60  Identities=17%  Similarity=0.198  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHhH----HHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816          386 LLESTKKELESQMNELALKEKEVAGLKESV----AKTKARLSDLELESNRLEQIIQATQSKVTK  445 (456)
Q Consensus       386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv----~e~k~RL~~LE~ess~L~~~v~~~kSKV~k  445 (456)
                      .+..+.+|+++.-+++....+|.++..++.    .++.+++..|+.+...|.+.+.++.+.+.+
T Consensus       985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A          985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444433333    355577777888888888888887765443

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=89.98  E-value=2.7  Score=42.00  Aligned_cols=73  Identities=22%  Similarity=0.280  Sum_probs=38.1

Q ss_pred             CcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 012816          350 QIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES  429 (456)
Q Consensus       350 gfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~es  429 (456)
                      .=...||+++|+|+...-      .+++.+-..|-+.+-++..-||.   +.+|-++.|++...+|++....|.+++.+.
T Consensus       396 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (471)
T 3mq9_A          396 RNVTHLLQQELTEAQKGF------QDVEAQAATANHTVMALMASLDA---EKAQGQKKVEELEGEITTLNHKLQDASAEV  466 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhhH------HHHHHHhhhcchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334567888888766544      44444445555555555555543   334444455554444455544444444443


Q ss_pred             hh
Q 012816          430 NR  431 (456)
Q Consensus       430 s~  431 (456)
                      .+
T Consensus       467 ~~  468 (471)
T 3mq9_A          467 ER  468 (471)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=89.94  E-value=3.5  Score=36.56  Aligned_cols=41  Identities=24%  Similarity=0.262  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 012816          386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE  426 (456)
Q Consensus       386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE  426 (456)
                      .+..++.++.+....+....+++.++++++.++..++++||
T Consensus        90 E~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           90 EIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=87.62  E-value=3.3  Score=39.18  Aligned_cols=48  Identities=10%  Similarity=0.118  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 012816          393 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ  440 (456)
Q Consensus       393 ELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~k  440 (456)
                      |++....++....+++.++..++.+.-+++..++.....+...+..++
T Consensus        91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~  138 (256)
T 3na7_A           91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELE  138 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344443444444444444444444444444444444443333

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=87.61  E-value=2.6  Score=44.17  Aligned_cols=53  Identities=13%  Similarity=0.072  Sum_probs=18.3

Q ss_pred             EEeccEEeeccchHHH-HHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhc
Q 012816          272 VSVGKYHVRASISSIL-QSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQS  325 (456)
Q Consensus       272 v~VnGFqVl~Sqv~iV-~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~k  325 (456)
                      |+-+||+++|..++.- ++=.++++--|-+|+.-++.|=++|=. =|.|-.+|.+
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~c~~~~~~~G~~CPT-tC~l~D~L~k   93 (464)
T 1m1j_B           40 ISGTGYQPRPPKQDKQAMKKGPIIYPDAGGCKHPLDELGVLCPT-GCELQTTLLK   93 (464)
T ss_dssp             -----------------------CCCCCSCEECSSTTTCEEEEC-TTHHHHHHHH
T ss_pred             cCCCCcCCCCCCCcchhhccCcccCCCCCCccccCCCccCcCCC-ccHHHHHHHH
Confidence            7789999999888775 444555555577777766665554422 3666666653

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=87.47  E-value=6.3  Score=34.87  Aligned_cols=55  Identities=15%  Similarity=0.175  Sum_probs=38.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 012816          383 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ  437 (456)
Q Consensus       383 ~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~  437 (456)
                      .+..++.+.+|+...-.+|.....+.......+++.+.++..|+.+..+|+..+.
T Consensus        80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A           80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345666677777777777777777777777777777777777777777765544

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=86.34  E-value=11  Score=35.47  Aligned_cols=40  Identities=18%  Similarity=0.294  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 012816          387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE  426 (456)
Q Consensus       387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE  426 (456)
                      +.++.+||+..-......++++.++-+++.+..+.+..++
T Consensus        92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~  131 (256)
T 3na7_A           92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK  131 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444344433333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=86.31  E-value=11  Score=47.66  Aligned_cols=50  Identities=20%  Similarity=0.221  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 012816          310 AYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN  361 (456)
Q Consensus       310 s~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLe  361 (456)
                      +.||+.|-.-...|.+.- ++|.. .......-|.-|.++.-.|+=|+..|.
T Consensus      1895 ~syLeli~~y~~ll~~K~-~el~~-~~~rl~~GL~KL~et~~~V~~l~~~L~ 1944 (3245)
T 3vkg_A         1895 RHYLDFINQVVLLINEKR-DQLEE-EQLHLNIGLKKLRDTEAQVKDLQVSLA 1944 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457776666555555444 44433 122222333333344444444444443

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=82.32  E-value=2.7  Score=42.78  Aligned_cols=60  Identities=10%  Similarity=0.181  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816          387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF  446 (456)
Q Consensus       387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf  446 (456)
                      +.+++.+|+...+++.+.+.++++++.++.++.++|.+.+.++-+|.-.+.++|.+|+=|
T Consensus         5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~   64 (403)
T 4etp_A            5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY   64 (403)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence            445556666666666777777777788889999999999999999999999999887655

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=81.69  E-value=22  Score=31.35  Aligned_cols=78  Identities=22%  Similarity=0.275  Sum_probs=49.5

Q ss_pred             hhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHH
Q 012816          355 WLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ  434 (456)
Q Consensus       355 WLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~  434 (456)
                      -|+..|....+.-      ...+.+-..|-+.+..++.-|+++   -++.++.+++++..|+.+...|.+++++..+|..
T Consensus        29 lLq~qLTqAQe~l------~~~eaQAaTCNqTV~tL~~SL~~e---kaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~   99 (121)
T 3mq7_A           29 LLQQELTEAQKGF------QDVEAQAATANHTVMALMASLDAE---KAQGQKKVEELEGEITTLNHKLQDASAEVERLRR   99 (121)
T ss_dssp             HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555555444322      233444556777777777666643   3444667778778888888888888888887766


Q ss_pred             HHHHhhh
Q 012816          435 IIQATQS  441 (456)
Q Consensus       435 ~v~~~kS  441 (456)
                      -...+..
T Consensus       100 ~~~~~~~  106 (121)
T 3mq7_A          100 ENQVLSV  106 (121)
T ss_dssp             HHHHHHH
T ss_pred             hchhhhh
Confidence            5554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	456
d1cqxa1	150	Flavohemoglobin, N-terminal domain {Alcaligenes eu	91.98
d1gvha1	146	Flavohemoglobin, N-terminal domain {Escherichia co	83.38
d1asha_	147	Ascaris hemoglobin, domain 1 {Pig roundworm (Ascar	82.23
d1vhba_	144	Bacterial dimeric hemoglobin {Vitreoscilla stercor	80.66

>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Flavohemoglobin, N-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=91.98  E-value=1.1  Score=36.47  Aligned_cols=43  Identities=5%  Similarity=0.136  Sum_probs=33.3

Q ss_pred             HHHHHHHhhcccccccCcccchhHHH---HHHHHHHHHHHHHhcch
Q 012816          285 SILQSIISRYGDIAANCNLESNSMRA---YYLECLCSVVQELQSTS  327 (456)
Q Consensus       285 ~iV~~IFeKHpDIAsnf~lKs~~lRs---~ymn~Ll~LIetL~ksp  327 (456)
                      .+-.++|+.||++-.-|...++.++.   .+|..|..+|+.|....
T Consensus        27 ~ff~rlF~~~P~~~~~F~~~~~~~~~h~~~~~~~l~~~V~~Ld~~~   72 (150)
T d1cqxa1          27 CFYQRMFEAHPELKNVFNMAHQEQGQQQQALARAVYAYAENIEDPN   72 (150)
T ss_dssp             HHHHHHHHHCGGGGGTSCCSCCCHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCHhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhccCHH
Confidence            45577899999999999877766655   57888888888776543

>d1gvha1 a.1.1.2 (A:1-146) Flavohemoglobin, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Flavohemoglobin, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.38  E-value=6  Score=31.84  Aligned_cols=92  Identities=9%  Similarity=0.134  Sum_probs=52.4

Q ss_pred             HHHHHHHhhcccccccCcccchhHH---HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 012816          285 SILQSIISRYGDIAANCNLESNSMR---AYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN  361 (456)
Q Consensus       285 ~iV~~IFeKHpDIAsnf~lKs~~lR---s~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLe  361 (456)
                      .+-.++|+.||++-.-|...++.++   ..+|..|-.+|..|.++.  .|. .-|......=   ...|++-+....--+
T Consensus        27 ~fy~rlF~~~P~~k~lF~~~~~~~~~h~~~~~~~l~~~v~~Ldd~~--~l~-~~l~~Lg~~H---~~~gv~~~~f~~~~~  100 (146)
T d1gvha1          27 HFYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLP--ALL-PAVEKIAQKH---TSFQIKPEQYNIVGE  100 (146)
T ss_dssp             HHHHHHHHHCGGGGGTSCCCTTCCSHHHHHHHHHHHHHHTTGGGGG--GGH-HHHHHHHHHH---HHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHCHHHHHHhhhcchhhHHHHHHHHHHHHHHHHhccchh--hHH-HHHHHHHHHH---HhCCCCHHHHHHHHH
Confidence            3467889999999999987776543   368899999998887654  221 1122211111   234777666554444


Q ss_pred             HHHHHH-HhhhhhhhHHHHHHh
Q 012816          362 EISEAI-EFSTQHQTIDAAKAN  382 (456)
Q Consensus       362 EV~Ear-e~~~~~~~~e~eKe~  382 (456)
                      -+.+.. +.+.-...++.++..
T Consensus       101 ~ll~~l~~~lg~~~e~~~AW~~  122 (146)
T d1gvha1         101 HLLATLDEMFSPGQEVLDAWGK  122 (146)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHH
Confidence            443333 223333344444433

>d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Ascaris hemoglobin, domain 1
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=82.23  E-value=2.9  Score=34.22  Aligned_cols=76  Identities=8%  Similarity=0.164  Sum_probs=48.5

Q ss_pred             hHHHHHHHhhcccccccCcc----------cchhHH---HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHh-c
Q 012816          284 SSILQSIISRYGDIAANCNL----------ESNSMR---AYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES-A  349 (456)
Q Consensus       284 v~iV~~IFeKHpDIAsnf~l----------Ks~~lR---s~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~-a  349 (456)
                      +.+..++|++|||+-.-|.-          .|+.|+   ..+|+.|-.+|..|....       .|......|..-=. .
T Consensus        28 ~~~f~~LF~~~P~~k~~F~~f~~~~~~~l~~s~~~~~h~~rv~~~l~~~V~~Ldd~~-------~l~~~l~~Lg~~H~~r  100 (147)
T d1asha_          28 IDLYKHMFENYPPLRKYFKSREEYTAEDVQNDPFFAKQGQKILLACHVLCATYDDRE-------TFNAYTRELLDRHARD  100 (147)
T ss_dssp             HHHHHHHHHHCGGGGGGSTTTTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHTTTSHH-------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCHHHHHhccccccCCHHHhccCHHHHHHHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHhccc
Confidence            67899999999999998862          466676   467888888888775443       44444444444432 3


Q ss_pred             Ccchh---h--hhhHHHHHHHH
Q 012816          350 QIDVD---W--LRNILNEISEA  366 (456)
Q Consensus       350 gfKVD---W--LekKLeEV~Ea  366 (456)
                      |+.++   |  +..-|.++.+.
T Consensus       101 ~v~v~~~~f~~~~~~l~~~l~~  122 (147)
T d1asha_         101 HVHMPPEVWTDFWKLFEEYLGK  122 (147)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHh
Confidence            55444   2  55555554443

>d1vhba_ a.1.1.2 (A:) Bacterial dimeric hemoglobin {Vitreoscilla stercoraria [TaxId: 61]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Bacterial dimeric hemoglobin
species: Vitreoscilla stercoraria [TaxId: 61]

Probab=80.66  E-value=7.5  Score=31.16  Aligned_cols=43  Identities=2%  Similarity=0.122  Sum_probs=28.2

Q ss_pred             HHHHHHHhhcccccccCcccchhHHH---HHHHHHHHHHHHHhcch
Q 012816          285 SILQSIISRYGDIAANCNLESNSMRA---YYLECLCSVVQELQSTS  327 (456)
Q Consensus       285 ~iV~~IFeKHpDIAsnf~lKs~~lRs---~ymn~Ll~LIetL~ksp  327 (456)
                      .+-.++|+.||++-.-|.--++.++.   ..|..|-.+|+.|..+.
T Consensus        26 ~fy~rLF~~~P~~k~lF~~~~~~~~~h~~~~~~~l~~~i~~Ldd~~   71 (144)
T d1vhba_          26 TFYKNLFAKHPEVRPLFDMGRQESLEQPKALAMTVLAAAQNIENLP   71 (144)
T ss_dssp             HHHHHHHHHCGGGGGGC---------CCTTHHHHHHHHHHTGGGGG
T ss_pred             HHHHHHHHHCHHHHHHhhhccHHHHHHHHHHHHHHHHHHHccCCHH
Confidence            45677899999999988766676664   67888888888887665