Citrus Sinensis ID: 012827

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-----
MMLRIKRVPTVVSNYQKEETEEAAAAARRVSGCGRNCLNKCCIQGAKLPLYAFKRVNKFKTEMGVHGHEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIARGDDANGGVAESVIGEADAKPKSGGEVDAINKNSCPAMVSGTPECLVLQ
ccEEEEEccEEEccccccHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEcccccccEEEEEcccccccccEEcccHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHccccccccccccccEEEccccEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHcccccccEEEEEEcccEEEEEccccccccccccccccccccccccEEEEcccccccccHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEcc
ccEEEEEccEEEEcccHcccHHHHHccccccccccHHHcccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccEEEcccccEEEEEEcccccccccccccEEcEEcccccccccccccccccEEEEEEEcccccccccccccccccccccEEEEEEccccccccEEEEcccHccccccccHHHHHHHHHHHHHHccccEEEEEccccccEcHHHHHEEEEEccccccccccccEEcccccccEEEEEEccccccEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEEEEEEccccccccccHHHHHccccHHHHHHccccccccHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHcccccHHHHcccccccccccHHHHHccccccccccccccccEEEEc
mmlrikrvptVVSNYQKEETEEAAAAARRVsgcgrnclnkcciqgaklplyAFKRVNKFKtemgvhghevrepeppvafldslvlGEWEDRVQRglfrydvtacetrvipgqyGFIAQlnegrhlkkrptefrvdkvlqpfdgnkfnftkvgqeEVLFQfeasedgevqfhpsapidvenspsvvainvspieygHVLLIPrvleclpqridrDSFLLALYMAAeagnpyfrlgynslgafatINHLHFQAYYmalpfpiekaptkkiistgsgvkisellnypvrglvfeggnsledlSNTVSDACiclqennipynvLIADCGKRIFLLPQCYAEKQALGEVSSelldtqvnpavWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIArgddanggvaesvigeadakpksggevdainknscpamvsgtpeclvlq
mmlrikrvptvvsnyqkeetEEAAAAARRVSGCGRNCLNKCCIQGAKLPLYAFKRVNKFKTEMGVHghevrepeppvAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLnegrhlkkrptefrvdkvlqpfdgnkFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIARGDDANGGVAESVIGeadakpksggeVDAINknscpamvsgtpeclvlq
MMLRIKRVPTVVSNYQKeeteeaaaaaRRVSGCGRNCLNKCCIQGAKLPLYAFKRVNKFKTEMGVHGHEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIARGDDANGGVAESVIGEADAKPKSGGEVDAINKNSCPAMVSGTPECLVLQ
***************************RRVSGCGRNCLNKCCIQGAKLPLYAFKRVNKFKTEMGVHGHEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEA*************IDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDY*****ENAWRLLAEVSLSEERYQEVNALIFEAIARGDD*********************************************
*MLRIKRVPTVVSNYQ****************CGRNCLNKCCIQGAKLPLYAFKRVNKFKTEMGVHGHEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHL**********KVLQPFDGNKFNFTKVGQEEVLFQFEASEDG**QFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFE**********************************KNSCPAMVSGTPECLVLQ
MMLRIKRVPTVVSNY**************VSGCGRNCLNKCCIQGAKLPLYAFKRVNKFKTEMGVHGHEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEISGHMVLKR**********NAWRLLAEVSLSEERYQEVNALIFEAIARGDDANGGVAESVIGEA********EVDAINKNSCPAMVSGTPECLVLQ
*MLRIKRVPTVVSNYQKEETEEAA*A*RRVSGCGRNCLNKCCIQGAKLPLYAFKRVNK***************EPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIARGD*******************S*************A*******C****
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MMLRIKRVPTVVSNYQKEETEEAAAAARRVSGCGRNCLNKCCIQGAKLPLYAFKRVNKFKTEMGVHGHEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIARGDDANGGVAESVIGEADAKPKSGGEVDAINKNSCPAMVSGTPECLVLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query455 2.2.26 [Sep-21-2011]
Q8RWE8442 GDP-L-galactose phosphory yes no 0.962 0.990 0.713 0.0
Q9FLP9431 GDP-L-galactose phosphory no no 0.857 0.904 0.760 0.0
Q3TLS3386 GDP-D-glucose phosphoryla yes no 0.685 0.808 0.323 8e-42
Q5E9T1385 GDP-D-glucose phosphoryla yes no 0.690 0.815 0.322 2e-41
Q6ZNW5385 GDP-D-glucose phosphoryla yes no 0.685 0.810 0.310 5e-41
Q8HXE4385 GDP-D-glucose phosphoryla N/A no 0.685 0.810 0.307 4e-39
Q08CA1343 GDP-D-glucose phosphoryla yes no 0.635 0.842 0.284 1e-38
Q0V9F1399 GDP-D-glucose phosphoryla yes no 0.679 0.774 0.276 3e-36
A8E5Y3399 GDP-D-glucose phosphoryla N/A no 0.734 0.837 0.267 7e-36
Q5ZR76482 GDP-D-glucose phosphoryla yes no 0.681 0.643 0.251 1e-17
>sp|Q8RWE8|GGAP1_ARATH GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2 PE=1 SV=1 Back     alignment and function desciption
 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/458 (71%), Positives = 374/458 (81%), Gaps = 20/458 (4%)

Query: 2   MLRIKRVPTVVSNYQKEETEEAAAAARRVSGCGRNCLNKCCIQGAKLPLYAFKRVNKFKT 61
           ML+IKRVPTVVSNYQK++  E         GCGRNCL  CC+ GA+LPLYA K + K   
Sbjct: 1   MLKIKRVPTVVSNYQKDDGAEDPV------GCGRNCLGACCLNGARLPLYACKNLVK-SG 53

Query: 62  EMGVHGHEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNE 121
           E  V  HE  EP  PVAFL+SLVLGEWEDR QRGLFRYDVTACET+VIPG+YGF+AQLNE
Sbjct: 54  EKLVISHEAIEP--PVAFLESLVLGEWEDRFQRGLFRYDVTACETKVIPGKYGFVAQLNE 111

Query: 122 GRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENS 181
           GRHLKKRPTEFRVDKVLQ FDG+KFNFTKVGQEE+LFQFEA ED +VQF P  PID ENS
Sbjct: 112 GRHLKKRPTEFRVDKVLQSFDGSKFNFTKVGQEELLFQFEAGEDAQVQFFPCMPIDPENS 171

Query: 182 PSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAF 241
           PSVVAINVSPIEYGHVLLIPRVL+CLPQRID  S LLA++MAAEA NPYFRLGYNSLGAF
Sbjct: 172 PSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHKSLLLAVHMAAEAANPYFRLGYNSLGAF 231

Query: 242 ATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSN 301
           ATINHLHFQAYY+A+PFP+EKAPTKKI +T SGVKISELL+YPVR L+FEGG+S+++LS+
Sbjct: 232 ATINHLHFQAYYLAMPFPLEKAPTKKITTTVSGVKISELLSYPVRSLLFEGGSSMQELSD 291

Query: 302 TVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEIS 361
           TVSD C+CLQ NNIP+N+LI+DCG++IFL+PQCYAEKQALGEVS E+L+TQVNPAVWEIS
Sbjct: 292 TVSDCCVCLQNNNIPFNILISDCGRQIFLMPQCYAEKQALGEVSPEVLETQVNPAVWEIS 351

Query: 362 GHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIA---RGDDANGGVAES 418
           GHMVLKRK+DYE ASE+NAWRLLAE SLSEER++EV AL FEAI    + +D  G +   
Sbjct: 352 GHMVLKRKEDYEGASEDNAWRLLAEASLSEERFKEVTALAFEAIGCSNQEEDLEGTIVHQ 411

Query: 419 VIGEADAKPKSGGEVDAINKNSCPAMVSGT-PECLVLQ 455
                +   KS       N+     + +GT  ECLVLQ
Sbjct: 412 QNSSGNVNQKS-------NRTHGGPITNGTAAECLVLQ 442
Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Acts as a phosphorylase rather than as a transferase. Uses preferentially GDP-L-galactose and GDP-D-glucose as substrates. Lower activity with GDP-L-fucose, very low activity with GDP-D-mannose, and no activity with UDP-D-glucose, UDP-D-galactose or ADP-D-glucose. Highly specific for inorganic phosphate as the guanylyl acceptor.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6EC: 9
>sp|Q9FLP9|GGAP2_ARATH GDP-L-galactose phosphorylase 2 OS=Arabidopsis thaliana GN=VTC5 PE=1 SV=1 Back     alignment and function description
>sp|Q3TLS3|GDPP1_MOUSE GDP-D-glucose phosphorylase 1 OS=Mus musculus GN=Gdpgp1 PE=2 SV=2 Back     alignment and function description
>sp|Q5E9T1|GDPP1_BOVIN GDP-D-glucose phosphorylase 1 OS=Bos taurus GN=GDPGP1 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZNW5|GDPP1_HUMAN GDP-D-glucose phosphorylase 1 OS=Homo sapiens GN=GDPGP1 PE=1 SV=2 Back     alignment and function description
>sp|Q8HXE4|GDPP1_MACFA GDP-D-glucose phosphorylase 1 OS=Macaca fascicularis GN=GDPGP1 PE=2 SV=1 Back     alignment and function description
>sp|Q08CA1|GDPP1_DANRE GDP-D-glucose phosphorylase 1 OS=Danio rerio GN=gdpgp1 PE=2 SV=1 Back     alignment and function description
>sp|Q0V9F1|GDPP1_XENTR GDP-D-glucose phosphorylase 1 OS=Xenopus tropicalis GN=gdpgp1 PE=2 SV=1 Back     alignment and function description
>sp|A8E5Y3|GDPP1_XENLA GDP-D-glucose phosphorylase 1 OS=Xenopus laevis GN=gdpgp1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZR76|GDPP1_CAEEL GDP-D-glucose phosphorylase 1 OS=Caenorhabditis elegans GN=gdpgp1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
319739581455 putative GDP-L-galactose-pyrophosphatase 1.0 1.0 1.0 0.0
225380880446 VTC2-like protein [Malus x domestica] 0.978 0.997 0.815 0.0
304266448445 GDP-L-galactose guanyltransferase [Rosa 0.975 0.997 0.808 0.0
255579015453 conserved hypothetical protein [Ricinus 0.986 0.991 0.793 0.0
284437902450 GDP-L-galactose phosphorylase [Actinidia 0.982 0.993 0.796 0.0
145408226450 VTC2-like protein [Actinidia chinensis] 0.982 0.993 0.799 0.0
224056351453 predicted protein [Populus trichocarpa] 0.993 0.997 0.789 0.0
224114425451 predicted protein [Populus trichocarpa] 0.989 0.997 0.789 0.0
345101169452 VTC [Vitis pseudoreticulata] 0.984 0.991 0.779 0.0
225460885452 PREDICTED: GDP-L-galactose phosphorylase 0.984 0.991 0.777 0.0
>gi|319739581|gb|ADV59925.1| putative GDP-L-galactose-pyrophosphatase [Citrus unshiu] Back     alignment and taxonomy information
 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/455 (100%), Positives = 455/455 (100%)

Query: 1   MMLRIKRVPTVVSNYQKEETEEAAAAARRVSGCGRNCLNKCCIQGAKLPLYAFKRVNKFK 60
           MMLRIKRVPTVVSNYQKEETEEAAAAARRVSGCGRNCLNKCCIQGAKLPLYAFKRVNKFK
Sbjct: 1   MMLRIKRVPTVVSNYQKEETEEAAAAARRVSGCGRNCLNKCCIQGAKLPLYAFKRVNKFK 60

Query: 61  TEMGVHGHEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLN 120
           TEMGVHGHEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLN
Sbjct: 61  TEMGVHGHEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLN 120

Query: 121 EGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVEN 180
           EGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVEN
Sbjct: 121 EGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVEN 180

Query: 181 SPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGA 240
           SPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGA
Sbjct: 181 SPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGA 240

Query: 241 FATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLS 300
           FATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLS
Sbjct: 241 FATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLS 300

Query: 301 NTVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEI 360
           NTVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEI
Sbjct: 301 NTVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEI 360

Query: 361 SGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIARGDDANGGVAESVI 420
           SGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIARGDDANGGVAESVI
Sbjct: 361 SGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIARGDDANGGVAESVI 420

Query: 421 GEADAKPKSGGEVDAINKNSCPAMVSGTPECLVLQ 455
           GEADAKPKSGGEVDAINKNSCPAMVSGTPECLVLQ
Sbjct: 421 GEADAKPKSGGEVDAINKNSCPAMVSGTPECLVLQ 455

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225380880|gb|ACN88681.1| VTC2-like protein [Malus x domestica] Back     alignment and taxonomy information
>gi|304266448|gb|ADM16545.1| GDP-L-galactose guanyltransferase [Rosa roxburghii] Back     alignment and taxonomy information
>gi|255579015|ref|XP_002530359.1| conserved hypothetical protein [Ricinus communis] gi|223530106|gb|EEF32020.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|284437902|gb|ADB85572.1| GDP-L-galactose phosphorylase [Actinidia deliciosa] Back     alignment and taxonomy information
>gi|145408226|gb|ABP65665.1| VTC2-like protein [Actinidia chinensis] Back     alignment and taxonomy information
>gi|224056351|ref|XP_002298816.1| predicted protein [Populus trichocarpa] gi|118488785|gb|ABK96203.1| unknown [Populus trichocarpa] gi|222846074|gb|EEE83621.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224114425|ref|XP_002316755.1| predicted protein [Populus trichocarpa] gi|222859820|gb|EEE97367.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|345101169|gb|AEN69451.1| VTC [Vitis pseudoreticulata] Back     alignment and taxonomy information
>gi|225460885|ref|XP_002278339.1| PREDICTED: GDP-L-galactose phosphorylase 1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
TAIR|locus:2116342442 VTC2 "vitamin c defective 2" [ 0.967 0.995 0.714 5e-170
TAIR|locus:2161620431 VTC5 "VITAMIN C DEFECTIVE 5" [ 0.925 0.976 0.704 6.3e-163
RGD|1560277385 Gdpgp1 "GDP-D-glucose phosphor 0.685 0.810 0.330 5.9e-41
MGI|MGI:2443429386 Gdpgp1 "GDP-D-glucose phosphor 0.685 0.808 0.332 8.7e-40
UNIPROTKB|Q5E9T1385 GDPGP1 "GDP-D-glucose phosphor 0.694 0.820 0.321 3.7e-39
UNIPROTKB|Q6ZNW5385 GDPGP1 "GDP-D-glucose phosphor 0.672 0.794 0.321 1.3e-38
UNIPROTKB|J9NW04408 GDPGP1 "Uncharacterized protei 0.679 0.757 0.318 7e-38
UNIPROTKB|F1SJX4384 GDPGP1 "Uncharacterized protei 0.676 0.802 0.321 7e-38
UNIPROTKB|Q8HXE4385 GDPGP1 "GDP-D-glucose phosphor 0.683 0.807 0.321 3e-37
ZFIN|ZDB-GENE-060929-280343 zgc:153343 "zgc:153343" [Danio 0.652 0.865 0.288 9.2e-36
TAIR|locus:2116342 VTC2 "vitamin c defective 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1653 (586.9 bits), Expect = 5.0e-170, P = 5.0e-170
 Identities = 326/456 (71%), Positives = 373/456 (81%)

Query:     2 MLRIKRVPTVVSNYQKXXXXXXXXXXRRVSGCGRNCLNKCCIQGAKLPLYAFKRVNKFKT 61
             ML+IKRVPTVVSNYQK              GCGRNCL  CC+ GA+LPLYA K + K   
Sbjct:     1 MLKIKRVPTVVSNYQKDDGAEDPV------GCGRNCLGACCLNGARLPLYACKNLVKSGE 54

Query:    62 EMGVHGHEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNE 121
             ++ V  HE  EP  PVAFL+SLVLGEWEDR QRGLFRYDVTACET+VIPG+YGF+AQLNE
Sbjct:    55 KL-VISHEAIEP--PVAFLESLVLGEWEDRFQRGLFRYDVTACETKVIPGKYGFVAQLNE 111

Query:   122 GRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENS 181
             GRHLKKRPTEFRVDKVLQ FDG+KFNFTKVGQEE+LFQFEA ED +VQF P  PID ENS
Sbjct:   112 GRHLKKRPTEFRVDKVLQSFDGSKFNFTKVGQEELLFQFEAGEDAQVQFFPCMPIDPENS 171

Query:   182 PSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAF 241
             PSVVAINVSPIEYGHVLLIPRVL+CLPQRID  S LLA++MAAEA NPYFRLGYNSLGAF
Sbjct:   172 PSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHKSLLLAVHMAAEAANPYFRLGYNSLGAF 231

Query:   242 ATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSN 301
             ATINHLHFQAYY+A+PFP+EKAPTKKI +T SGVKISELL+YPVR L+FEGG+S+++LS+
Sbjct:   232 ATINHLHFQAYYLAMPFPLEKAPTKKITTTVSGVKISELLSYPVRSLLFEGGSSMQELSD 291

Query:   302 TVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEIS 361
             TVSD C+CLQ NNIP+N+LI+DCG++IFL+PQCYAEKQALGEVS E+L+TQVNPAVWEIS
Sbjct:   292 TVSDCCVCLQNNNIPFNILISDCGRQIFLMPQCYAEKQALGEVSPEVLETQVNPAVWEIS 351

Query:   362 GHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIARGDDANGGVAESVIG 421
             GHMVLKRK+DYE ASE+NAWRLLAE SLSEER++EV AL FEAI   +       E + G
Sbjct:   352 GHMVLKRKEDYEGASEDNAWRLLAEASLSEERFKEVTALAFEAIGCSNQE-----EDLEG 406

Query:   422 EADAKPKSGGEVDA-INKNSCPAMVSGTP-ECLVLQ 455
                 +  S G V+   N+     + +GT  ECLVLQ
Sbjct:   407 TIVHQQNSSGNVNQKSNRTHGGPITNGTAAECLVLQ 442
GO:0005634 "nucleus" evidence=ISM
GO:0019853 "L-ascorbic acid biosynthetic process" evidence=IMP
GO:0009408 "response to heat" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP
GO:0008928 "mannose-1-phosphate guanylyltransferase (GDP) activity" evidence=IDA
GO:0010474 "glucose-1-phosphate guanylyltransferase (GDP) activity" evidence=IDA
GO:0010475 "galactose-1-phosphate guanylyltransferase (GDP) activity" evidence=IDA
GO:0010471 "GDP-galactose:mannose-1-phosphate guanylyltransferase activity" evidence=IDA
GO:0010472 "GDP-galactose:glucose-1-phosphate guanylyltransferase activity" evidence=IDA
GO:0010473 "GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity" evidence=IDA
GO:0080046 "quercetin 4'-O-glucosyltransferase activity" evidence=IDA
GO:0080048 "GDP-D-glucose phosphorylase activity" evidence=IDA
GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP
TAIR|locus:2161620 VTC5 "VITAMIN C DEFECTIVE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1560277 Gdpgp1 "GDP-D-glucose phosphorylase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2443429 Gdpgp1 "GDP-D-glucose phosphorylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9T1 GDPGP1 "GDP-D-glucose phosphorylase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZNW5 GDPGP1 "GDP-D-glucose phosphorylase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9NW04 GDPGP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJX4 GDPGP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXE4 GDPGP1 "GDP-D-glucose phosphorylase 1" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-280 zgc:153343 "zgc:153343" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FLP9GGAP2_ARATH2, ., 7, ., 7, ., 6, 90.76030.85710.9048nono
Q8RWE8GGAP1_ARATH2, ., 7, ., 7, ., 6, 90.71390.96260.9909yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.983
4th Layer2.7.7.690.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0062001301
hypothetical protein (452 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_XIII0193
GDP-D-mannose-3',5'-epimerase (EC-5.1.3.18) (375 aa)
     •• 0.905
estExt_Genewise1_v1.C_LG_VI0423
SubName- Full=Putative uncharacterized protein; (270 aa)
     •• 0.905
fgenesh4_pm.C_LG_XVI000023
L-galactose-1-phosphate phosphatase (EC-3.1.3.25) (286 aa)
     •• 0.904

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
PLN03103403 PLN03103, PLN03103, GDP-L-galactose-hexose-1-phosp 0.0
>gnl|CDD|215577 PLN03103, PLN03103, GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information 
 Score =  762 bits (1969), Expect = 0.0
 Identities = 312/410 (76%), Positives = 349/410 (85%), Gaps = 13/410 (3%)

Query: 2   MLRIKRVPTVVSNYQKEETEEAAAAARRVSGCGRNCLNKCCIQGAKLPLYAFKRVNKFKT 61
           ML IKRVPTVVSNYQ ++            GCGRNCL KCC+ GAKLPLYAFK+V+K  +
Sbjct: 1   MLTIKRVPTVVSNYQDDDELG---------GCGRNCLGKCCLPGAKLPLYAFKKVSKDDS 51

Query: 62  EMGVHGHEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNE 121
                     +PEP V+FLDSL+L +WEDR+ RGLFRYDVTACET+VIPG+YGFIAQLNE
Sbjct: 52  GKLGSFSS--KPEPSVSFLDSLLLAQWEDRMARGLFRYDVTACETKVIPGKYGFIAQLNE 109

Query: 122 GRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENS 181
           GRHLKKRPTEFRVDKVLQPFDG KFNFTKVGQEEVLFQFE  ED   +F PSAPID  NS
Sbjct: 110 GRHLKKRPTEFRVDKVLQPFDGKKFNFTKVGQEEVLFQFEQGEDDIPEFFPSAPIDASNS 169

Query: 182 PSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAF 241
           P+VVAINVSPIEYGHVLL+PRVL+CLPQRID DSFLLALYMAAEA NPYFR+GYNSLGAF
Sbjct: 170 PNVVAINVSPIEYGHVLLVPRVLDCLPQRIDPDSFLLALYMAAEANNPYFRVGYNSLGAF 229

Query: 242 ATINHLHFQAYYMALPFPIEKAPTKKII--STGSGVKISELLNYPVRGLVFEGGNSLEDL 299
           ATINHLHFQAYY+A PFP+EKAPT +I   +  SGVK+SEL++YPVRGLVFEGG+ LEDL
Sbjct: 230 ATINHLHFQAYYLANPFPVEKAPTVRIPHGTAKSGVKVSELVDYPVRGLVFEGGSDLEDL 289

Query: 300 SNTVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWE 359
           +N+V+DACICLQ+NNIPYN+LI+DCGKR+FL PQCYAEKQALGEVS ELLDTQVNPAVWE
Sbjct: 290 ANSVADACICLQDNNIPYNLLISDCGKRVFLFPQCYAEKQALGEVSQELLDTQVNPAVWE 349

Query: 360 ISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIARGD 409
           ISGH+VLKRK+DYE A+EE AWRLLAEVSLSEER+QEV AL F A A   
Sbjct: 350 ISGHIVLKRKEDYERATEEYAWRLLAEVSLSEERFQEVKALCFAASAADC 399

Length = 403

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 455
PLN03103403 GDP-L-galactose-hexose-1-phosphate guanyltransfera 100.0
KOG2720431 consensus Predicted hydrolase (HIT family) [Genera 100.0
COG4360298 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetr 99.97
PF0983062 ATP_transf: ATP adenylyltransferase; InterPro: IPR 99.42
COG0537138 Hit Diadenosine tetraphosphate (Ap4A) hydrolase an 99.24
PRK10687119 purine nucleoside phosphoramidase; Provisional 99.23
cd0046886 HIT_like HIT family: HIT (Histidine triad) protein 99.17
PF0123098 HIT: HIT domain; InterPro: IPR001310 The Histidine 99.11
cd01276104 PKCI_related Protein Kinase C Interacting protein 99.02
cd01275126 FHIT FHIT (fragile histidine family): FHIT protein 98.98
cd01277103 HINT_subgroup HINT (histidine triad nucleotide-bin 98.91
cd01278104 aprataxin_related aprataxin related: Aprataxin, a 98.9
KOG3275127 consensus Zinc-binding protein of the histidine tr 98.79
KOG3379150 consensus Diadenosine polyphosphate hydrolase and 98.53
TIGR01239489 galT_2 galactose-1-phosphate uridylyltransferase, 98.26
PRK05270493 galactose-1-phosphate uridylyltransferase; Provisi 98.17
PF11969116 DcpS_C: Scavenger mRNA decapping enzyme C-term bin 98.11
PRK11720346 galactose-1-phosphate uridylyltransferase; Provisi 98.08
TIGR00209347 galT_1 galactose-1-phosphate uridylyltransferase, 98.02
cd00608329 GalT Galactose-1-phosphate uridyl transferase (Gal 97.77
PLN02643336 ADP-glucose phosphorylase 97.68
COG4468503 GalT Galactose-1-phosphate uridyltransferase [Carb 97.6
PF04677121 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; In 97.22
KOG4359166 consensus Protein kinase C inhibitor-like protein 97.19
PLN02643336 ADP-glucose phosphorylase 96.01
cd00608329 GalT Galactose-1-phosphate uridyl transferase (Gal 95.66
KOG2476528 consensus Uncharacterized conserved protein [Funct 94.97
PRK11720346 galactose-1-phosphate uridylyltransferase; Provisi 94.48
TIGR00209347 galT_1 galactose-1-phosphate uridylyltransferase, 94.31
KOG0562184 consensus Predicted hydrolase (HIT family) [Genera 91.56
PF02611222 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: 90.09
TIGR00672250 cdh CDP-diacylglycerol pyrophosphatase, bacterial 89.65
PRK05471252 CDP-diacylglycerol pyrophosphatase; Provisional 84.88
COG1085338 GalT Galactose-1-phosphate uridylyltransferase [En 82.67
KOG2477628 consensus Uncharacterized conserved protein [Funct 82.53
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.8e-114  Score=880.62  Aligned_cols=392  Identities=79%  Similarity=1.299  Sum_probs=371.5

Q ss_pred             ceeeeecceeeccccchhhHHHHHhhcccCCcCcccccccccCCccccceeeccccccccCCcccCCCCCCCCCchhhhh
Q 012827            2 MLRIKRVPTVVSNYQKEETEEAAAAARRVSGCGRNCLNKCCIQGAKLPLYAFKRVNKFKTEMGVHGHEVREPEPPVAFLD   81 (455)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d   81 (455)
                      |||||||||||||||+|+...         |||||||++||++|++||||+|+.......+......+  .++...++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~c~~~~~~~pl~~~~~~~~~~~~~~~~~~~--~~~~~~s~ld   69 (403)
T PLN03103          1 MLTIKRVPTVVSNYQDDDELG---------GCGRNCLGKCCLPGAKLPLYAFKKVSKDDSGKLGSFSS--KPEPSVSFLD   69 (403)
T ss_pred             Ccceeecchhhhhhhhhcccc---------CcchhhhhhcCCCCccCchhhhcccccccccccccccc--cCcCCccHHH
Confidence            899999999999999999544         99999999999999999999999998776544332333  5578899999


Q ss_pred             HHHHHHHHHHHHcCCceeeccceeEEEecCceeEEEEEccCccccCCCCcccccccccCCCCCCcccccCCCcceeEEee
Q 012827           82 SLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFE  161 (455)
Q Consensus        82 ~lll~~We~a~~~G~FrY~l~~~~tKvl~G~~~fvaQlNp~R~lkkRP~~~~~~~~~~pFd~~~FnF~K~~~eE~Lf~~~  161 (455)
                      ++|+++|++||++|+|||+|++|+||++||+++|+||||++|++||||++|+++++.|||||.||||||++++|+||+++
T Consensus        70 ~~L~~~Wedr~~~GlFrY~l~~~~tkvlpG~~gFvaQLN~~R~~krR~~~f~i~~v~qpFd~~kFNF~KV~~~EvLf~~~  149 (403)
T PLN03103         70 SLLLAQWEDRMARGLFRYDVTACETKVIPGKYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGKKFNFTKVGQEEVLFQFE  149 (403)
T ss_pred             HHHHHHHHHHHhcCCcccccccceeEEecCccceEEEecccchhccCCCccchhhccCCCCCCcccCCCCCCceeEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCCCCcccCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Q 012827          162 ASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAF  241 (455)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~~~~~gf~vfyNs~gAg  241 (455)
                      +++++.+.++|++|+...++.+.|++|+|||++||+||||+...|+||+|+.+.+..++++++++++++|||||||+||+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~~~~l~la~~~a~~~~~p~frvgYNSlGA~  229 (403)
T PLN03103        150 QGEDDIPEFFPSAPIDASNSPNVVAINVSPIEYGHVLLVPRVLDCLPQRIDPDSFLLALYMAAEANNPYFRVGYNSLGAF  229 (403)
T ss_pred             cCCCcccccccCCccccCCCccEEEEeCCCCccCeEEEcCCcccCCCeEecHHHHHHHHHHHHhcCCCcEEEEecCCccc
Confidence            99999999999999877788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEEEecCCCCcccCCCcccee--ccCCCceeeecCCCcceeEEEecCCCHHHHHHHHHHHHHhhcCCCCCeEE
Q 012827          242 ATINHLHFQAYYMALPFPIEKAPTKKII--STGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDACICLQENNIPYNV  319 (455)
Q Consensus       242 ASv~HlHfQ~~~l~~~lPiE~~~~~~l~--~~~~g~~i~~l~~yP~~~fvf~~~~~~e~L~~~l~~~l~~L~~~~~PyNL  319 (455)
                      |||||||||++|++++||||++|++++.  ....|+.++.+.+||+++|+|+++++.+++++.|++++++|+++++||||
T Consensus       230 ASvNHLHFQa~yl~~~lPvE~ap~~~l~~~~~~~g~~vy~L~~yP~~~lvf~~~~~~~~l~~~v~~~~~~L~~~niP~NL  309 (403)
T PLN03103        230 ATINHLHFQAYYLANPFPVEKAPTVRIPHGTAKSGVKVSELVDYPVRGLVFEGGSDLEDLANSVADACICLQDNNIPYNL  309 (403)
T ss_pred             cCcceeeeeecccCCCCccccCccccccccccCCCceEEEecCCCceEEEEEeCccHHHHHHHHHHHHHhhccCCcceEE
Confidence            9999999999999999999999998883  33567889999999999999997678999999999999999999999999


Q ss_pred             EEEcCCcEEEEEecchHhhhhcccccccccccccccceecccceeeecChhHHHHHhHHHHHHHHHHhcCCHHHHHHHHH
Q 012827          320 LIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNA  399 (455)
Q Consensus       320 lit~~g~~v~l~PR~y~~k~~~g~~~~~lL~~~~spaa~elaG~llvk~~edfe~lte~~~~~IL~EVsl~~~~f~~l~~  399 (455)
                      |+|++|+|++|||+||++|++.|++++++|+++||||+|||||||++|+++||+++||+.+++||+||+|++++|++|++
T Consensus       310 ~i~~~g~rvflfP~Cy~~k~~~g~v~~~lL~s~~NPA~~EmsG~l~~~~~eDfe~lTE~~~~~il~EvsLse~~f~ev~~  389 (403)
T PLN03103        310 LISDCGKRVFLFPQCYAEKQALGEVSQELLDTQVNPAVWEISGHIVLKRKEDYERATEEYAWRLLAEVSLSEERFQEVKA  389 (403)
T ss_pred             EEEcCCeEEEEeCchhhhhhhccccchhHhhccCChhhHhhcceeeecchHhhhhcCHHHHHHHHHHccCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 012827          400 LIFEA  404 (455)
Q Consensus       400 ~l~~~  404 (455)
                      +|++.
T Consensus       390 ~i~~~  394 (403)
T PLN03103        390 LCFAA  394 (403)
T ss_pred             HHHhc
Confidence            99988

>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism] Back     alignment and domain information
>PF09830 ATP_transf: ATP adenylyltransferase; InterPro: IPR019200 Diadenosine 5',5'''-P-1,P-4-tetraphosphate (Ap4A) and related diadenosine oligoposphates such as Ap3A are important intracellular and extracellular signalling molecules in prokaryotes and eukaryotes [] Back     alignment and domain information
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK10687 purine nucleoside phosphoramidase; Provisional Back     alignment and domain information
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides Back     alignment and domain information
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms [] Back     alignment and domain information
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides Back     alignment and domain information
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases Back     alignment and domain information
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides Back     alignment and domain information
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome Back     alignment and domain information
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms] Back     alignment and domain information
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only] Back     alignment and domain information
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2 Back     alignment and domain information
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues Back     alignment and domain information
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only] Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>KOG2476 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3 Back     alignment and domain information
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type Back     alignment and domain information
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional Back     alignment and domain information
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>KOG2477 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
3r6f_A135 HIT family protein; structural genomics, seattle s 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 46/389 (11%), Positives = 96/389 (24%), Gaps = 124/389 (31%)

Query: 32  GCGRNCLNKCCIQGAKLPLYAFKRVNKFKTEMGVH----GHEVREPEPPVAFLDSL---- 83
           G G+  +       A     ++K   K   +  +      +    PE  +  L  L    
Sbjct: 160 GSGKTWV-------ALDVCLSYKVQCKM--DFKIFWLNLKN-CNSPETVLEMLQKLLYQI 209

Query: 84  --VLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFR-----VD- 135
                   D       R      E R               R LK +P  +      +  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELR---------------RLLKSKP--YENCLLVLLN 252

Query: 136 ----KVLQPFDGN-K----------FNF------TKVGQEEVLFQFEASEDGEVQFHPSA 174
               K    F+ + K           +F      T +  +         E   +      
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYL 311

Query: 175 PIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLG 234
               ++ P    +  +P     + +I   +       D                 +  + 
Sbjct: 312 DCRPQDLPR-EVLTTNPR---RLSIIAESIRDGLATWDN----------------WKHVN 351

Query: 235 YNSLGAF--ATINHLH---FQAYYMALP-FPIEKAPTKKIISTGSGVKISE-----LLNY 283
            + L     +++N L    ++  +  L  FP                 I       +   
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-------------PSAHIPTILLSLIWFD 398

Query: 284 PVRGLVFEGGNSLEDLSNTVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGE 343
            ++  V    N L   S         +++      + I      I+L  +   E +    
Sbjct: 399 VIKSDVMVVVNKLHKYS--------LVEKQPKESTISIPS----IYLELKVKLENEY--A 444

Query: 344 VSSELLDTQVNPAVWEISGHMVLKRKKDY 372
           +   ++D    P  ++ S  ++      Y
Sbjct: 445 LHRSIVDHYNIPKTFD-SDDLIPPYLDQY 472
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi} Length = 135 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query455
3ano_A218 AP-4-A phosphorylase; diadenosine polyphosphate, H 99.32
3n1s_A119 HIT-like protein HINT; histidine triad nucleotide 99.24
4egu_A119 Histidine triad (HIT) protein; structural genomics 99.18
1fit_A147 FragIle histidine protein; FHIT, fragIle histidine 99.17
3oj7_A117 Putative histidine triad family protein; hydrolase 99.16
3o0m_A149 HIT family protein; ssgcid, NIH, niaid, SBRI, UW, 99.15
3lb5_A161 HIT-like protein involved in cell-cycle regulatio; 99.14
3o1c_A126 Histidine triad nucleotide-binding protein 1; hydr 99.12
3imi_A147 HIT family protein; structural genomics, infectiou 99.12
3ksv_A149 Uncharacterized protein; HIT family, structural ge 99.12
1y23_A145 HIT, histidine triad protein; HIT protein, PKCI-1, 99.11
2eo4_A149 150AA long hypothetical histidine triad nucleotid 99.11
3r6f_A135 HIT family protein; structural genomics, seattle s 99.05
3l7x_A173 SMU.412C, putative HIT-like protein involved in ce 99.04
1xqu_A147 HIT family hydrolase; protein STRU initiative, PSI 99.0
3p0t_A138 Uncharacterized protein; ssgcid, HIT-like protein, 98.86
1ems_A440 Nitfhit, NIT-fragIle histidine triad fusion protei 98.78
2oik_A154 Histidine triad (HIT) protein; HIT-like fold, stru 98.75
3ohe_A137 Histidine triad (HIT) protein; structural genomics 98.7
3i24_A149 HIT family hydrolase; structural genomics, PSI-2, 98.6
1gup_A348 Galactose-1-phosphate uridylyltransferase; nucleot 98.42
3nrd_A135 Histidine triad (HIT) protein; structural genomics 98.41
1z84_A351 Galactose-1-phosphate uridyl transferase-like prot 98.33
3sp4_A204 Aprataxin-like protein; HIT domain, zinc finger, D 98.3
3i4s_A149 Histidine triad protein; hydrolase, phosphatase, H 98.1
1z84_A351 Galactose-1-phosphate uridyl transferase-like prot 98.06
1gup_A348 Galactose-1-phosphate uridylyltransferase; nucleot 92.94
3bl9_A301 Scavenger mRNA-decapping enzyme DCPS; ligand compl 91.94
1vlr_A350 MRNA decapping enzyme; 16740816, structural genomi 91.0
2pof_A227 CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM0 90.77
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Back     alignment and structure
Probab=99.32  E-value=1.5e-12  Score=124.68  Aligned_cols=116  Identities=14%  Similarity=0.155  Sum_probs=82.3

Q ss_pred             ccccccCCCCCCcccccCC----------CcceeEEeecCCCCccccCCCCCcccCCCceEEEEcCCCCCCCeEEEeccc
Q 012827          134 VDKVLQPFDGNKFNFTKVG----------QEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRV  203 (455)
Q Consensus       134 ~~~~~~pFd~~~FnF~K~~----------~eE~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~vllN~~Pi~~gH~LlVP~~  203 (455)
                      ++.|..-|+|||..|.+..          .+.|+||--..+.+...     .+.++++.+++++|.||+.+||+||||++
T Consensus        39 ~~~m~~l~~p~r~~y~~~~~~~~~~~~~~~~~CiFC~i~~~e~~~~-----~iV~edd~~~afld~~P~~pGH~LVIPkr  113 (218)
T 3ano_A           39 RDQLQRLWTPYRMNYLAEAPVKRDPNSSASPAQPFTEIPQLSDEEG-----LVVARGKLVYAVLNLYPYNPGHLMVVPYR  113 (218)
T ss_dssp             CCSCCCCCCCCC-------------------CCHHHHGGGSCHHHH-----TEEEECSSEEEEECSSCSSTTCEEEEESS
T ss_pred             CchhhhcccchHHHHhcCCCcccccccCCCCCCcCcccccCCCCCc-----eEEEECCcEEEEEccCCCCCcEEEEEech
Confidence            5789999999999987632          24699985433211111     12357888999999999999999999997


Q ss_pred             CcccCCCCCHHHHHHHHHHHHH--------hCCCCeEEEEec-CCCCCCC-CeeEEEEEec
Q 012827          204 LECLPQRIDRDSFLLALYMAAE--------AGNPYFRLGYNS-LGAFATI-NHLHFQAYYM  254 (455)
Q Consensus       204 ~~~~~Q~L~~~~l~~~~~l~~~--------~~~~gf~vfyNs-~gAgASv-~HlHfQ~~~l  254 (455)
                      +......|+.+++..+.++++.        ...+||++++|. ..||++| .|+|+|+++.
T Consensus       114 Hv~~l~dL~~ee~~~L~~l~~~v~~~l~~~~~~~g~ni~~n~G~~aGq~V~~HlHiHIIPR  174 (218)
T 3ano_A          114 RVSELEDLTDLESAELMAFTQKAIRVIKNVSRPHGFNVGLNLGTSAGGSLAEHLHVHVVPR  174 (218)
T ss_dssp             CCCCGGGSCHHHHHHHHHHHHHHHHHHHHHCCCSEEEEEEEESGGGTCTTTTSCCEEEEEE
T ss_pred             hhCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCcccCEEEEEEEcc
Confidence            6666667888776666555443        235699999998 7788999 9999999986
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A* Back     alignment and structure
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile} Back     alignment and structure
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Back     alignment and structure
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A* Back     alignment and structure
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str} Back     alignment and structure
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae} Back     alignment and structure
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A Back     alignment and structure
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1 Back     alignment and structure
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0 Back     alignment and structure
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1 Back     alignment and structure
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi} Back     alignment and structure
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans} Back     alignment and structure
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1 Back     alignment and structure
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp} Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1 Back     alignment and structure
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei} Back     alignment and structure
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114} Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti} Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Back     alignment and structure
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum} Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A* Back     alignment and structure
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B* Back     alignment and structure
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query455
d1emsa1160 NIT-FHIT fusion protein, C-terminal domain {Nemato 99.29
d1y23a_139 Hit {Bacillus subtilis [TaxId: 1423]} 99.25
d1fita_146 FHIT (fragile histidine triad protein) {Human (Hom 99.25
d1kpfa_111 Protein kinase C inhibitor-1, PKCI-1 {Human (Homo 99.22
d1xqua_113 Putative hydrolase {Clostridium thermocellum [TaxI 99.15
d2oika1139 Histidine triad protein Mfla2506 {Methylobacillus 98.84
d1guqa2171 Galactose-1-phosphate uridylyltransferase {Escheri 98.51
d1z84a2156 Galactose-1-phosphate uridylyltransferase {Thale c 98.44
d1vlra1192 mRNA decapping enzyme DcpS C-terminal domain {Mous 97.42
d1z84a1173 Galactose-1-phosphate uridylyltransferase {Thale c 96.22
d1guqa1176 Galactose-1-phosphate uridylyltransferase {Escheri 95.8
d2pofa1220 CDP-diacylglycerol pyrophosphatase CDH {Escherichi 90.47
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: NIT-FHIT fusion protein, C-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.29  E-value=1.9e-12  Score=116.04  Aligned_cols=77  Identities=18%  Similarity=0.189  Sum_probs=63.8

Q ss_pred             cCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHH--------hCCCCeEEEEec-CCCCCCCCeeE
Q 012827          178 VENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAE--------AGNPYFRLGYNS-LGAFATINHLH  248 (455)
Q Consensus       178 ~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~--------~~~~gf~vfyNs-~gAgASv~HlH  248 (455)
                      ++++.+++++|++|+.+||+||||+++......|+++++..++.+++.        .+.+||++++|. ..||++|+|+|
T Consensus        33 ~ede~~~af~Di~P~~pgH~LVIPK~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~G~~aGq~V~HlH  112 (160)
T d1emsa1          33 YSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVH  112 (160)
T ss_dssp             EECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSGGGTCCSSSCC
T ss_pred             EeCCCEEEEECCCCCCCCeEEEEEecccchhhhhhhHHHHHHHHHHHHhhhhhhhccccceEEEecccCCCCCeEEeEEE
Confidence            457778999999999999999999976666666788877666665543        245799999999 88999999999


Q ss_pred             EEEEec
Q 012827          249 FQAYYM  254 (455)
Q Consensus       249 fQ~~~l  254 (455)
                      +|++++
T Consensus       113 iHIIPR  118 (160)
T d1emsa1         113 IHILPR  118 (160)
T ss_dssp             EEEEEE
T ss_pred             EEEECC
Confidence            999986
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Back     information, alignment and structure
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure