Citrus Sinensis ID: 012834


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-----
MHGLSRLGSARSTTSSPPSSPRFRHGRNKNIAGSRVGSGGGKQNLVEKLVVVLISAVFKRKGVLLVAPLLYISVMLLYMSSFGFDVVDLKSVVVVRERAPPGSVYRSPQVFQKLWPFMQAEAIANNTLMTAWNSKVHQPWKPCADRSNSNAELPKSNGFLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELPEDILQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFSNRLAQGVPSNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLEVLNCIELSALPSINLLFNKFILIWFLVKYEYLLLKLCFVLLKNKFLKCCANTLQFLVIITG
cccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEcccccccccccccHHHHcHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHcEEccccccccccccccccccccccHHHHHHHcccccEEEccccHHHHHHcccccccEEEEcccccccHHHHHHHHHHHHHHcccEEEccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHcccccccccccccccccccEEEccc
cccccccccccccccccccccccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccHHHHHHHHHHHHccccccccHHHHcccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccHHHHccHHHHHHHHHHHcEHHHcccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccEEEEcccHHHHHccccHHHHHHEEHHHHHHHcccHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccEEEEEcccccccHHHHHHHHHHHHHccHHHHccccccccHHHHHHcccccccHHHHHHHHHHcccccccEEEEEEcEccccHHHHHHHHHHcccccccHHHccccccccEEEEEEc
mhglsrlgsarsttssppssprfrhgrnkniagsrvgsgggkqNLVEKLVVVLISAVFKRKGVLLVAPLLYISVMLLYMSsfgfdvvdlKSVVVVrerappgsvyrspqvfQKLWPFMQAEAIANNTLMTawnskvhqpwkpcadrsnsnaelpksngFLIIEangglnqqrLSICDAVAVAGLLNATLVIPIFHlnsvwrdssnfgdifdedFFMHALRSNVNVVKELPEDILQQFDHNISSIVNLrvkgwsspthyLQKVLPKLqhlgavriapfsnrlaqgvpsniqgLRCLANFEALRFSEPIRMLAEKMVDRMVknssqsggkyVSVHLRFETDMVAfscceydggeeeKREMDIARERSWRgkfrkrgrvirpganrvdgkcpltplevlncielsalpsinlLFNKFILIWFLVKYEYLLLKLCFVLLKNKFLKCCANTLQFLVIITG
mhglsrlgsarsttssppssprfrhgrnkniagsrvgsgggkqnLVEKLVVVLISAVFKRKGVLLVAPLLYISVMLLYMSSFGFDVVDLKSVVVVRErappgsvyrspqvFQKLWPFMQAEAIANNTLMTAWNSKVHQPWKPCADRSNSNAELPKSNGFLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELPEDILQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFSNRLAQGVPSNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEydggeeekremdiarerswrgkfrkrgrvirpganrvdgkcplTPLEVLNCIELSALPSINLLFNKFILIWFLVKYEYLLLKLCFVLLKNKFLKCCANTLQFLVIITG
MHGLSRLGSARsttssppsspRFRHGRNKNIAGSRVGSGGGKQNLVEKLVVVLISAVFKRKGVLLVAPLLYISVMLLYMSSFGFDvvdlksvvvvRERAPPGSVYRSPQVFQKLWPFMQAEAIANNTLMTAWNSKVHQPWKPCADRSNSNAELPKSNGFLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELPEDILQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFSNRLAQGVPSNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLEVLNCIELSALPSINLLFNKFILIWFLVKYEYlllklcfvllknkflkccANTLQFLVIITG
*******************************************NLVEKLVVVLISAVFKRKGVLLVAPLLYISVMLLYMSSFGFDVVDLKSVVVVRERAPPGSVYRSPQVFQKLWPFMQAEAIANNTLMTAWNSKVHQPWKPC*************NGFLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELPEDILQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFSNRLAQGVPSNIQGLRCLANFEALRFSEPIRMLAEKMVDR*********GKYVSVHLRFETDMVAFSCCEYDG***************WRGKFRKRGRVIRPGANRVDGKCPLTPLEVLNCIELSALPSINLLFNKFILIWFLVKYEYLLLKLCFVLLKNKFLKCCANTLQFLVII**
*************************************************VVVLISAVFKRKGVLLVAPLLYISVMLLYMSSFGFD**********************************************************************SNGFLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELPEDILQQFDHNI***VN***KGWSSPTHYLQKVLPKLQHLGAVRIAPFSNRLAQGVPSNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVK*****GGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRV**PGANRVDGKCPLTPLEVLNCIELSALPSINLLFNKFILIWFLVKYEYLLLKLCFVLLKNKFLKCCANTLQFLVIITG
************************HGRNKNIAGSRVGSGGGKQNLVEKLVVVLISAVFKRKGVLLVAPLLYISVMLLYMSSFGFDVVDLKSVVVVRERAPPGSVYRSPQVFQKLWPFMQAEAIANNTLMTAWNSKVHQPWKPCADRSNSNAELPKSNGFLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELPEDILQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFSNRLAQGVPSNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLEVLNCIELSALPSINLLFNKFILIWFLVKYEYLLLKLCFVLLKNKFLKCCANTLQFLVIITG
******************************************QNLVEKLVVVLISAVFKRKGVLLVAPLLYISVMLLYMSSFGFDVVDLKSVVVVRERAPPGSVYRSPQVFQKLWPFMQAEAIANNTLMTAWNSKVHQPWKPCADRSNSNAELPKSNGFLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELPEDILQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFSNRLAQGVPSNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLEVLNCIELSALPSINLLFNKFILIWFLVKYEYLLLKLCFVLLKNKFLKCCANTLQFLVIITG
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
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MHGLSRLGSARSTTSSPPSSPRFRHGRNKNIAGSRVGSGGGKQNLVEKLVVVLISAVFKRKGVLLVAPLLYISVMLLYMSSFGFDVVDLKSVVVVRERAPPGSVYRSPQVFQKLWPFMQAEAIANNTLMTAWNSKVHQPWKPCADRSNSNAELPKSNGFLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELPEDILQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFSNRLAQGVPSNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLEVLNCIELSALPSINLLFNKFILIWFLVKYEYLLLKLCFVLLKNKFLKCCANTLQFLVIITG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query455 2.2.26 [Sep-21-2011]
Q8W486 519 Uncharacterized protein A no no 0.553 0.485 0.364 8e-38
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1 Back     alignment and function desciption
 Score =  158 bits (400), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 97/266 (36%), Positives = 146/266 (54%), Gaps = 14/266 (5%)

Query: 132 WNSKVHQPWKPC-ADRSNSNAELPKSNGFLIIEANGGLNQQRLSICDAVAVAGLLNATLV 190
           W S     W+P  A RS+      ++NG+L +  NGGLNQQR +IC+AV  A ++NATLV
Sbjct: 63  WESAKSGGWRPSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLV 122

Query: 191 IPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELPEDILQQFDHNISSIVNLRVK 250
           +P    NS W D S F  I+D + F+  L+ +V +V ++P D+ +           +R  
Sbjct: 123 LPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIP-DVHKNGKTKKIKAFQIRPP 181

Query: 251 GWSSPTHYLQKVLPKLQHLGAVRIAPFSNRLAQGVPS-NIQGLRCLANFEALRFSEPIRM 309
             +    YL   L  ++   A+ + PFS+RLA+ + +   Q LRC  N+ ALRF   I  
Sbjct: 182 RDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMK 241

Query: 310 LAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGK 369
           L+E +VD++     +S G ++S+HLRFE DM+AF+ C      EE++ +   R+ ++  K
Sbjct: 242 LSESIVDKL-----RSQGHFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKENFADK 296

Query: 370 FRKRGRVIRPGANRVDGKCPLTPLEV 395
                R+I     R  GKCPLTP EV
Sbjct: 297 -----RLIY-NERRAIGKCPLTPEEV 316





Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
356507704 683 PREDICTED: DUF246 domain-containing prot 0.852 0.568 0.745 1e-168
356515426 566 PREDICTED: DUF246 domain-containing prot 0.852 0.685 0.740 1e-167
449447613 573 PREDICTED: DUF246 domain-containing prot 0.865 0.687 0.727 1e-167
255585812 587 conserved hypothetical protein [Ricinus 0.868 0.672 0.734 1e-165
359493257 582 PREDICTED: DUF246 domain-containing prot 0.868 0.678 0.703 1e-163
224146358 584 predicted protein [Populus trichocarpa] 0.778 0.606 0.774 1e-163
297846612 569 hypothetical protein ARALYDRAFT_473680 [ 0.857 0.685 0.702 1e-156
15293043 568 putative growth regulator protein [Arabi 0.854 0.684 0.702 1e-156
18399706 568 O-fucosyltransferase-like protein [Arabi 0.854 0.684 0.702 1e-156
357455475 577 DUF246 domain-containing protein [Medica 0.753 0.594 0.719 1e-146
>gi|356507704|ref|XP_003522604.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 296/397 (74%), Positives = 332/397 (83%), Gaps = 9/397 (2%)

Query: 1   MHGLSRLGSARSTTSSPPSSPRFRHGRNKNIAGSRVGSGGGKQNLVEKLVVVLISAVFKR 60
           MHG SRLG A     SPPSSPRFRHGR+K+ +           N +EKLV +L+SAVF+R
Sbjct: 118 MHGYSRLGGA---ARSPPSSPRFRHGRSKSSSWCSSKE----SNSMEKLVFILMSAVFRR 170

Query: 61  KGVLLVAPLLYISVMLLYMSSFGFDVVDLKS-VVVVRERAPPGSVYRSPQVFQKLWPFMQ 119
           +G+LL APLLYIS MLLYM S   DVV +K+ VV+V +RAPPGSVYRSPQ+FQ LWPFM+
Sbjct: 171 RGLLLFAPLLYISGMLLYMGSLSIDVVSIKNGVVLVHKRAPPGSVYRSPQLFQNLWPFME 230

Query: 120 AE-AIANNTLMTAWNSKVHQPWKPCADRSNSNAELPKSNGFLIIEANGGLNQQRLSICDA 178
           A+     N LM AW  K  + WKPCA+RS    ELPKSNGFLIIEANGGLNQQRLSICDA
Sbjct: 231 ADNGTTLNVLMRAWTKKELREWKPCANRSVPEIELPKSNGFLIIEANGGLNQQRLSICDA 290

Query: 179 VAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELPEDILQQFD 238
           VAVAGLLNATL+IPIFHLNSVWRDSSNFGDIFDE+FF+ +L + V+VV+ELP+DILQ+FD
Sbjct: 291 VAVAGLLNATLLIPIFHLNSVWRDSSNFGDIFDENFFIQSLGNRVHVVRELPDDILQRFD 350

Query: 239 HNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFSNRLAQGVPSNIQGLRCLANF 298
           +NIS+IVNLRVKGWSS  HYLQKVLP+L  +GAVRIAPFSNRLAQ VPS IQGLRC ANF
Sbjct: 351 NNISNIVNLRVKGWSSSAHYLQKVLPQLLEMGAVRIAPFSNRLAQAVPSKIQGLRCFANF 410

Query: 299 EALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREM 358
            ALRFSEPIR LAE MVDRMVK SS SGGKYVSVHLRFE DMVAFSCCEYDGGEEEK EM
Sbjct: 411 GALRFSEPIRTLAESMVDRMVKYSSHSGGKYVSVHLRFEEDMVAFSCCEYDGGEEEKHEM 470

Query: 359 DIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLEV 395
           DIARERSWRGKFR++ R+I+PGANRVDG+CPLTPLEV
Sbjct: 471 DIARERSWRGKFRRKHRIIKPGANRVDGRCPLTPLEV 507




Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515426|ref|XP_003526401.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
>gi|449447613|ref|XP_004141562.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] gi|449506825|ref|XP_004162859.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255585812|ref|XP_002533585.1| conserved hypothetical protein [Ricinus communis] gi|223526544|gb|EEF28803.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359493257|ref|XP_002272758.2| PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224146358|ref|XP_002325978.1| predicted protein [Populus trichocarpa] gi|222862853|gb|EEF00360.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297846612|ref|XP_002891187.1| hypothetical protein ARALYDRAFT_473680 [Arabidopsis lyrata subsp. lyrata] gi|297337029|gb|EFH67446.1| hypothetical protein ARALYDRAFT_473680 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15293043|gb|AAK93632.1| putative growth regulator protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18399706|ref|NP_564461.1| O-fucosyltransferase-like protein [Arabidopsis thaliana] gi|23297509|gb|AAN12984.1| putative growth regulator [Arabidopsis thaliana] gi|332193681|gb|AEE31802.1| O-fucosyltransferase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357455475|ref|XP_003598018.1| DUF246 domain-containing protein [Medicago truncatula] gi|355487066|gb|AES68269.1| DUF246 domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
TAIR|locus:2014666 568 AT1G35510 [Arabidopsis thalian 0.854 0.684 0.673 5.6e-139
TAIR|locus:2049527 567 AT2G01480 [Arabidopsis thalian 0.806 0.647 0.536 3.2e-104
TAIR|locus:2006852 562 AT1G14970 [Arabidopsis thalian 0.780 0.631 0.510 4.7e-96
TAIR|locus:504956200 589 AT1G38131 [Arabidopsis thalian 0.648 0.500 0.555 1.4e-87
TAIR|locus:1005716710 470 AT1G38065 "AT1G38065" [Arabido 0.545 0.527 0.614 1e-82
TAIR|locus:2029984 611 AT1G29200 [Arabidopsis thalian 0.472 0.351 0.391 6.7e-54
TAIR|locus:2121909 519 AT4G24530 [Arabidopsis thalian 0.424 0.371 0.466 1.6e-51
TAIR|locus:2168297 504 AT5G65470 [Arabidopsis thalian 0.441 0.398 0.426 9.8e-50
TAIR|locus:2008935 590 AT1G11990 [Arabidopsis thalian 0.582 0.449 0.407 8.8e-47
TAIR|locus:2079281557 AT3G26370 [Arabidopsis thalian 0.578 0.472 0.356 1.6e-45
TAIR|locus:2014666 AT1G35510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1360 (483.8 bits), Expect = 5.6e-139, P = 5.6e-139
 Identities = 272/404 (67%), Positives = 315/404 (77%)

Query:     1 MHGLSRLGSARXXXXXXX------XXXRFRHGRNKNIAGSRVGSGGGKQNLVEKLVVVLI 54
             MHGLSRLG+                  R RH R K++AG     G  KQ L E+LV +L 
Sbjct:     1 MHGLSRLGNGSSNGRINIPSPSPPSSPRIRHTRGKSLAG-----GVYKQGLGERLVFLLF 55

Query:    55 SAVFKRKGVLLVAPLLYISVMLLYMSSFGFDXXXXXXXXXX-RERAPPGSVYRSPQVFQK 113
             S VF+RKGVLL+APLLYI+ MLL+M SFGF              R  PGSVYRSP+VF++
Sbjct:    56 SIVFRRKGVLLLAPLLYIAGMLLFMGSFGFTVLDLGHGVEIVYRRGSPGSVYRSPKVFKR 115

Query:   114 LWPFMQAEA--IANNTLMTAWNSKVHQPWKPCADRSNSNAELPKSNGFLIIEANGGLNQQ 171
             LWP M+A+    ++N LM AW  +V   WKPC   +N +A    SNG+ IIEANGGLNQQ
Sbjct:   116 LWPVMEADVNGSSHNVLMEAWKPRVKSVWKPCIS-TNVSAAGSNSNGYFIIEANGGLNQQ 174

Query:   172 RLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELPE 231
             RLSICDAVAVAGLLNATLVIPIFHLNSVWRDSS FGDIFDEDFF++AL  NVNVVKELP+
Sbjct:   175 RLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSKFGDIFDEDFFIYALSKNVNVVKELPK 234

Query:   232 DILQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFSNRLAQGVPSNIQG 291
             D+L+++++NISSIVNLR+K WSSP +YLQKVLP+L  LGAVR+APFSNRLA  VP++IQG
Sbjct:   235 DVLERYNYNISSIVNLRLKAWSSPAYYLQKVLPQLLRLGAVRVAPFSNRLAHAVPAHIQG 294

Query:   292 LRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGG 351
             LRCLANFEALRF+EPIR+LAEKMVDRMV  S +SGGKYVSVHLRFE DMVAFSCCEYD G
Sbjct:   295 LRCLANFEALRFAEPIRLLAEKMVDRMVTKSVESGGKYVSVHLRFEMDMVAFSCCEYDFG 354

Query:   352 EEEKREMDIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLEV 395
             + EK EMD+ARER W+GKFR+RGRVIRPGANR+DGKCPLTPLEV
Sbjct:   355 QAEKLEMDMARERGWKGKFRRRGRVIRPGANRIDGKCPLTPLEV 398




GO:0005794 "Golgi apparatus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM
TAIR|locus:2049527 AT2G01480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006852 AT1G14970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956200 AT1G38131 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1005716710 AT1G38065 "AT1G38065" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029984 AT1G29200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121909 AT4G24530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168297 AT5G65470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008935 AT1G11990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079281 AT3G26370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
gw1.XIX.2012.1
hypothetical protein (576 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
cd11299290 cd11299, O-FucT_plant, GDP-fucose protein O-fucosy 5e-88
pfam10250315 pfam10250, O-FucT, GDP-fucose protein O-fucosyltra 4e-64
cd11296206 cd11296, O-FucT_like, GDP-fucose protein O-fucosyl 0.004
>gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily Back     alignment and domain information
 Score =  269 bits (691), Expect = 5e-88
 Identities = 111/247 (44%), Positives = 142/247 (57%), Gaps = 50/247 (20%)

Query: 159 FLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHA 218
           +L++ ANGGLNQQR  ICDAVAVA LLNATLV+P    NSVW DSS FGDI+D D F+ +
Sbjct: 1   YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60

Query: 219 LRSNVNVVKELPEDILQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFS 278
           L+ +V VVK+LPE++  +       I   RV   SSP++YL++VLP L+  G +R+APF 
Sbjct: 61  LKDDVRVVKKLPEELASKKPE----ITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFD 116

Query: 279 NRLA-QGVPSNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFE 337
           +RLA   +P  IQ LRC  NF ALRF   I  L +K+VDR+ +     GG ++++HLRFE
Sbjct: 117 SRLANDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREA----GGPFLALHLRFE 172

Query: 338 TDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLEVLN 397
            DM+AFS C                                       GKCPLTP EV  
Sbjct: 173 KDMLAFSGC---------------------------------------GKCPLTPEEVGL 193

Query: 398 CIELSAL 404
              L AL
Sbjct: 194 L--LRAL 198


Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290

>gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase Back     alignment and domain information
>gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 455
PF10250351 O-FucT: GDP-fucose protein O-fucosyltransferase; I 100.0
KOG3849386 consensus GDP-fucose protein O-fucosyltransferase 95.59
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats Back     alignment and domain information
Probab=100.00  E-value=1.3e-43  Score=348.54  Aligned_cols=250  Identities=32%  Similarity=0.506  Sum_probs=169.2

Q ss_pred             ecCChhhHHHHHHHHHHHHHHhcCcEeecccccccccCCCCC-----CCCCCChHHHHHhccCCcEEeccCchhHHhhhc
Q 012834          164 ANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSN-----FGDIFDEDFFMHALRSNVNVVKELPEDILQQFD  238 (455)
Q Consensus       164 ~nGGLNQqR~~IcDAVaVARiLNATLVlP~l~~~S~W~D~S~-----F~DIFDvdhFI~sL~~dVrIVk~LP~~~~~~~~  238 (455)
                      +.||+||||.++++||++|++||+|||||.+...+.|+|.++     |+|+||+++|+++++++|.+.+.+|........
T Consensus         6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~   85 (351)
T PF10250_consen    6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR   85 (351)
T ss_dssp             -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence            899999999999999999999999999999999999999988     999999999999999999999999876644221


Q ss_pred             ccc-------------------------cceeeccccC-CCChhhhhhhhhhhhhhc------ceEEEccCCcccccC-C
Q 012834          239 HNI-------------------------SSIVNLRVKG-WSSPTHYLQKVLPKLQHL------GAVRIAPFSNRLAQG-V  285 (455)
Q Consensus       239 ~~~-------------------------~~i~~~~v~~-~s~~~yY~~~VLP~L~k~------~VI~l~~f~~RLa~~-l  285 (455)
                      ...                         .....+.... |+.+.+|.++++|.+.++      +++.|.++..++.++ .
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  165 (351)
T PF10250_consen   86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL  165 (351)
T ss_dssp             EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred             hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence            100                         0112222333 788999999999999887      999999999999876 7


Q ss_pred             CCcchhhcccccccccccchhHHHHHHHHHHHHhhcccCCCCceEEEeecchhhhhhhhcccCCCChhHHHHHHHHHHhh
Q 012834          286 PSNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERS  365 (455)
Q Consensus       286 P~~iQrLRCrvnf~ALrF~p~I~~lg~~LV~Rmr~~s~~s~g~yIALHLRfE~DMlAfSgC~~~gg~~E~~eL~~~R~~~  365 (455)
                      +.++||        +|+|+++|+++|++++++|+.    .+++|||+|||+|+||  +++|.+++   ++.+|..+|.. 
T Consensus       166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~----~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~-  227 (351)
T PF10250_consen  166 DRDLQR--------YLRFSPEIRELADKFIKRLLA----GGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW-  227 (351)
T ss_dssp             GGGGGG--------G--B-HHHHHHHHHHHHHH--------SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH-
T ss_pred             CccceE--------EEecCHHHHHHHHHHHHHhhc----ccCceEEEeecccCch--HhhcccCC---chHHHHHhHhh-
Confidence            788887        999999999999999999992    4689999999999999  99999955   67788777764 


Q ss_pred             cccccccCCcccCCcccccCCCCCCChhHHHHHHHHhCCCCcceeeeecccccchHHHHHHHHHhhhhhhhhhh
Q 012834          366 WRGKFRKRGRVIRPGANRVDGKCPLTPLEVLNCIELSALPSINLLFNKFILIWFLVKYEYLLLKLCFVLLKNKF  439 (455)
Q Consensus       366 wk~k~~k~~~~i~~~~~R~~G~CPLTPeEvgl~LraLGf~~~T~iY~a~g~i~~~~~~~~~l~~~~~p~l~n~~  439 (455)
                       ..      ..+++.+.+..+.||++|+|++.+++++|+.+.|.||||++++|++.+.|.+|++ .||.+..|.
T Consensus       228 -~~------~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~-~~~~~~~~~  293 (351)
T PF10250_consen  228 -GK------KSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKN-MFPNVVTKD  293 (351)
T ss_dssp             --G------GGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HH-HHHHHHGGG
T ss_pred             -cc------ccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHH-HhhhhEecc
Confidence             11      1567788999999999999999999999999999999999999999999999999 999877443



Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.

>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.0 bits (121), Expect = 6e-07
 Identities = 79/438 (18%), Positives = 140/438 (31%), Gaps = 106/438 (24%)

Query: 71  YISVMLLYMSSF--GFDVVD----LKSVV-------VVRERAPPGSVYR--------SPQ 109
           Y  ++ ++  +F   FD  D     KS++       ++  +       R          +
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 110 VFQKLWPFMQAEAIANNT--LMTAWNSKVHQPWKP------CADR-SNSNAELPKSN--- 157
           + QK   F++ E +  N   LM+   ++  QP           DR  N N    K N   
Sbjct: 78  MVQK---FVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 158 GFLIIEANGGLNQQRLSICDAVAVAGLLNA---TLVIPIFHLNSVWRDSSNFGDIFDEDF 214
               ++    L    L     V + G+L +    + +       V         +  + F
Sbjct: 134 LQPYLKLRQAL--LELRPAKNVLIDGVLGSGKTWVAL------DVCLSYKVQCKMDFKIF 185

Query: 215 FMHALRSNVNVVKELPEDILQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRI 274
           +++    N N  + + E +LQ+  + I      R    S+    +  +  +L+ L  ++ 
Sbjct: 186 WLNL--KNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKS 240

Query: 275 APFSNRLAQGVPSNIQGLRCLANFE----AL---RFSEPIRMLAEKMVDRMVKNSSQSG- 326
            P+ N L   V  N+Q  +    F      L   RF +    L+      +  +      
Sbjct: 241 KPYENCLL--VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 327 ---------GKYVSVH---LRFET--------DMVAFSCCEYDGGEEEKREMDIARERSW 366
                     KY+      L  E          ++A          E  R+  +A   +W
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA----------ESIRDG-LATWDNW 347

Query: 367 RG-KFRKRGRVIRPGANRVDGKCPLTPLEVLNC-IELSALP-SINLLFNKFILIWFLVKY 423
           +     K   +I    N       L P E       LS  P S ++      LIWF V  
Sbjct: 348 KHVNCDKLTTIIESSLNV------LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 424 ---EYLLLKLCFVLLKNK 438
                ++ KL    L  K
Sbjct: 402 SDVMVVVNKLHKYSLVEK 419


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query455
4ap5_A408 GDP-fucose protein O-fucosyltransferase 2; GT-B, G 98.34
3zy2_A362 Putative GDP-fucose protein O-fucosyltransferase; 97.11
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* Back     alignment and structure
Probab=98.34  E-value=4.2e-06  Score=84.60  Aligned_cols=70  Identities=21%  Similarity=0.387  Sum_probs=54.8

Q ss_pred             CCCCceEEEEec-C-ChhhHHHHHHHHHHHHHHhcCc----EeecccccccccCCCC------CCCCCCChHHHHHhccC
Q 012834          154 PKSNGFLIIEAN-G-GLNQQRLSICDAVAVAGLLNAT----LVIPIFHLNSVWRDSS------NFGDIFDEDFFMHALRS  221 (455)
Q Consensus       154 ~~snGYL~V~~n-G-GLNQqR~~IcDAVaVARiLNAT----LVlP~l~~~S~W~D~S------~F~DIFDvdhFI~sL~~  221 (455)
                      ...++||+-..| | |.|.||...-.|.++|+.||.|    ||||-...---|+-.+      .|++.||++.+    +.
T Consensus        19 ~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~   94 (408)
T 4ap5_A           19 ASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NK   94 (408)
T ss_dssp             -CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HT
T ss_pred             ccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hh
Confidence            467899999975 5 8999999999999999999999    9999664333355332      49999999865    45


Q ss_pred             CcEEec
Q 012834          222 NVNVVK  227 (455)
Q Consensus       222 dVrIVk  227 (455)
                      .|+||.
T Consensus        95 ~vpVI~  100 (408)
T 4ap5_A           95 NIPVIE  100 (408)
T ss_dssp             TSCEEE
T ss_pred             hCCeeE
Confidence            667764



>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00