Citrus Sinensis ID: 012834
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 455 | ||||||
| 356507704 | 683 | PREDICTED: DUF246 domain-containing prot | 0.852 | 0.568 | 0.745 | 1e-168 | |
| 356515426 | 566 | PREDICTED: DUF246 domain-containing prot | 0.852 | 0.685 | 0.740 | 1e-167 | |
| 449447613 | 573 | PREDICTED: DUF246 domain-containing prot | 0.865 | 0.687 | 0.727 | 1e-167 | |
| 255585812 | 587 | conserved hypothetical protein [Ricinus | 0.868 | 0.672 | 0.734 | 1e-165 | |
| 359493257 | 582 | PREDICTED: DUF246 domain-containing prot | 0.868 | 0.678 | 0.703 | 1e-163 | |
| 224146358 | 584 | predicted protein [Populus trichocarpa] | 0.778 | 0.606 | 0.774 | 1e-163 | |
| 297846612 | 569 | hypothetical protein ARALYDRAFT_473680 [ | 0.857 | 0.685 | 0.702 | 1e-156 | |
| 15293043 | 568 | putative growth regulator protein [Arabi | 0.854 | 0.684 | 0.702 | 1e-156 | |
| 18399706 | 568 | O-fucosyltransferase-like protein [Arabi | 0.854 | 0.684 | 0.702 | 1e-156 | |
| 357455475 | 577 | DUF246 domain-containing protein [Medica | 0.753 | 0.594 | 0.719 | 1e-146 |
| >gi|356507704|ref|XP_003522604.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 296/397 (74%), Positives = 332/397 (83%), Gaps = 9/397 (2%)
Query: 1 MHGLSRLGSARSTTSSPPSSPRFRHGRNKNIAGSRVGSGGGKQNLVEKLVVVLISAVFKR 60
MHG SRLG A SPPSSPRFRHGR+K+ + N +EKLV +L+SAVF+R
Sbjct: 118 MHGYSRLGGA---ARSPPSSPRFRHGRSKSSSWCSSKE----SNSMEKLVFILMSAVFRR 170
Query: 61 KGVLLVAPLLYISVMLLYMSSFGFDVVDLKS-VVVVRERAPPGSVYRSPQVFQKLWPFMQ 119
+G+LL APLLYIS MLLYM S DVV +K+ VV+V +RAPPGSVYRSPQ+FQ LWPFM+
Sbjct: 171 RGLLLFAPLLYISGMLLYMGSLSIDVVSIKNGVVLVHKRAPPGSVYRSPQLFQNLWPFME 230
Query: 120 AE-AIANNTLMTAWNSKVHQPWKPCADRSNSNAELPKSNGFLIIEANGGLNQQRLSICDA 178
A+ N LM AW K + WKPCA+RS ELPKSNGFLIIEANGGLNQQRLSICDA
Sbjct: 231 ADNGTTLNVLMRAWTKKELREWKPCANRSVPEIELPKSNGFLIIEANGGLNQQRLSICDA 290
Query: 179 VAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELPEDILQQFD 238
VAVAGLLNATL+IPIFHLNSVWRDSSNFGDIFDE+FF+ +L + V+VV+ELP+DILQ+FD
Sbjct: 291 VAVAGLLNATLLIPIFHLNSVWRDSSNFGDIFDENFFIQSLGNRVHVVRELPDDILQRFD 350
Query: 239 HNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFSNRLAQGVPSNIQGLRCLANF 298
+NIS+IVNLRVKGWSS HYLQKVLP+L +GAVRIAPFSNRLAQ VPS IQGLRC ANF
Sbjct: 351 NNISNIVNLRVKGWSSSAHYLQKVLPQLLEMGAVRIAPFSNRLAQAVPSKIQGLRCFANF 410
Query: 299 EALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREM 358
ALRFSEPIR LAE MVDRMVK SS SGGKYVSVHLRFE DMVAFSCCEYDGGEEEK EM
Sbjct: 411 GALRFSEPIRTLAESMVDRMVKYSSHSGGKYVSVHLRFEEDMVAFSCCEYDGGEEEKHEM 470
Query: 359 DIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLEV 395
DIARERSWRGKFR++ R+I+PGANRVDG+CPLTPLEV
Sbjct: 471 DIARERSWRGKFRRKHRIIKPGANRVDGRCPLTPLEV 507
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515426|ref|XP_003526401.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449447613|ref|XP_004141562.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] gi|449506825|ref|XP_004162859.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|255585812|ref|XP_002533585.1| conserved hypothetical protein [Ricinus communis] gi|223526544|gb|EEF28803.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|359493257|ref|XP_002272758.2| PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224146358|ref|XP_002325978.1| predicted protein [Populus trichocarpa] gi|222862853|gb|EEF00360.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|297846612|ref|XP_002891187.1| hypothetical protein ARALYDRAFT_473680 [Arabidopsis lyrata subsp. lyrata] gi|297337029|gb|EFH67446.1| hypothetical protein ARALYDRAFT_473680 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|15293043|gb|AAK93632.1| putative growth regulator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|18399706|ref|NP_564461.1| O-fucosyltransferase-like protein [Arabidopsis thaliana] gi|23297509|gb|AAN12984.1| putative growth regulator [Arabidopsis thaliana] gi|332193681|gb|AEE31802.1| O-fucosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|357455475|ref|XP_003598018.1| DUF246 domain-containing protein [Medicago truncatula] gi|355487066|gb|AES68269.1| DUF246 domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 455 | ||||||
| TAIR|locus:2014666 | 568 | AT1G35510 [Arabidopsis thalian | 0.854 | 0.684 | 0.673 | 5.6e-139 | |
| TAIR|locus:2049527 | 567 | AT2G01480 [Arabidopsis thalian | 0.806 | 0.647 | 0.536 | 3.2e-104 | |
| TAIR|locus:2006852 | 562 | AT1G14970 [Arabidopsis thalian | 0.780 | 0.631 | 0.510 | 4.7e-96 | |
| TAIR|locus:504956200 | 589 | AT1G38131 [Arabidopsis thalian | 0.648 | 0.500 | 0.555 | 1.4e-87 | |
| TAIR|locus:1005716710 | 470 | AT1G38065 "AT1G38065" [Arabido | 0.545 | 0.527 | 0.614 | 1e-82 | |
| TAIR|locus:2029984 | 611 | AT1G29200 [Arabidopsis thalian | 0.472 | 0.351 | 0.391 | 6.7e-54 | |
| TAIR|locus:2121909 | 519 | AT4G24530 [Arabidopsis thalian | 0.424 | 0.371 | 0.466 | 1.6e-51 | |
| TAIR|locus:2168297 | 504 | AT5G65470 [Arabidopsis thalian | 0.441 | 0.398 | 0.426 | 9.8e-50 | |
| TAIR|locus:2008935 | 590 | AT1G11990 [Arabidopsis thalian | 0.582 | 0.449 | 0.407 | 8.8e-47 | |
| TAIR|locus:2079281 | 557 | AT3G26370 [Arabidopsis thalian | 0.578 | 0.472 | 0.356 | 1.6e-45 |
| TAIR|locus:2014666 AT1G35510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1360 (483.8 bits), Expect = 5.6e-139, P = 5.6e-139
Identities = 272/404 (67%), Positives = 315/404 (77%)
Query: 1 MHGLSRLGSARXXXXXXX------XXXRFRHGRNKNIAGSRVGSGGGKQNLVEKLVVVLI 54
MHGLSRLG+ R RH R K++AG G KQ L E+LV +L
Sbjct: 1 MHGLSRLGNGSSNGRINIPSPSPPSSPRIRHTRGKSLAG-----GVYKQGLGERLVFLLF 55
Query: 55 SAVFKRKGVLLVAPLLYISVMLLYMSSFGFDXXXXXXXXXX-RERAPPGSVYRSPQVFQK 113
S VF+RKGVLL+APLLYI+ MLL+M SFGF R PGSVYRSP+VF++
Sbjct: 56 SIVFRRKGVLLLAPLLYIAGMLLFMGSFGFTVLDLGHGVEIVYRRGSPGSVYRSPKVFKR 115
Query: 114 LWPFMQAEA--IANNTLMTAWNSKVHQPWKPCADRSNSNAELPKSNGFLIIEANGGLNQQ 171
LWP M+A+ ++N LM AW +V WKPC +N +A SNG+ IIEANGGLNQQ
Sbjct: 116 LWPVMEADVNGSSHNVLMEAWKPRVKSVWKPCIS-TNVSAAGSNSNGYFIIEANGGLNQQ 174
Query: 172 RLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELPE 231
RLSICDAVAVAGLLNATLVIPIFHLNSVWRDSS FGDIFDEDFF++AL NVNVVKELP+
Sbjct: 175 RLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSKFGDIFDEDFFIYALSKNVNVVKELPK 234
Query: 232 DILQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFSNRLAQGVPSNIQG 291
D+L+++++NISSIVNLR+K WSSP +YLQKVLP+L LGAVR+APFSNRLA VP++IQG
Sbjct: 235 DVLERYNYNISSIVNLRLKAWSSPAYYLQKVLPQLLRLGAVRVAPFSNRLAHAVPAHIQG 294
Query: 292 LRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGG 351
LRCLANFEALRF+EPIR+LAEKMVDRMV S +SGGKYVSVHLRFE DMVAFSCCEYD G
Sbjct: 295 LRCLANFEALRFAEPIRLLAEKMVDRMVTKSVESGGKYVSVHLRFEMDMVAFSCCEYDFG 354
Query: 352 EEEKREMDIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLEV 395
+ EK EMD+ARER W+GKFR+RGRVIRPGANR+DGKCPLTPLEV
Sbjct: 355 QAEKLEMDMARERGWKGKFRRRGRVIRPGANRIDGKCPLTPLEV 398
|
|
| TAIR|locus:2049527 AT2G01480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2006852 AT1G14970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:504956200 AT1G38131 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:1005716710 AT1G38065 "AT1G38065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2029984 AT1G29200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2121909 AT4G24530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2168297 AT5G65470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2008935 AT1G11990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2079281 AT3G26370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| gw1.XIX.2012.1 | hypothetical protein (576 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 455 | |||
| cd11299 | 290 | cd11299, O-FucT_plant, GDP-fucose protein O-fucosy | 5e-88 | |
| pfam10250 | 315 | pfam10250, O-FucT, GDP-fucose protein O-fucosyltra | 4e-64 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 0.004 |
| >gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily | Back alignment and domain information |
|---|
Score = 269 bits (691), Expect = 5e-88
Identities = 111/247 (44%), Positives = 142/247 (57%), Gaps = 50/247 (20%)
Query: 159 FLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHA 218
+L++ ANGGLNQQR ICDAVAVA LLNATLV+P NSVW DSS FGDI+D D F+ +
Sbjct: 1 YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60
Query: 219 LRSNVNVVKELPEDILQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFS 278
L+ +V VVK+LPE++ + I RV SSP++YL++VLP L+ G +R+APF
Sbjct: 61 LKDDVRVVKKLPEELASKKPE----ITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFD 116
Query: 279 NRLA-QGVPSNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFE 337
+RLA +P IQ LRC NF ALRF I L +K+VDR+ + GG ++++HLRFE
Sbjct: 117 SRLANDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREA----GGPFLALHLRFE 172
Query: 338 TDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLEVLN 397
DM+AFS C GKCPLTP EV
Sbjct: 173 KDMLAFSGC---------------------------------------GKCPLTPEEVGL 193
Query: 398 CIELSAL 404
L AL
Sbjct: 194 L--LRAL 198
|
Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290 |
| >gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 455 | |||
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 100.0 | |
| KOG3849 | 386 | consensus GDP-fucose protein O-fucosyltransferase | 95.59 |
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=348.54 Aligned_cols=250 Identities=32% Similarity=0.506 Sum_probs=169.2
Q ss_pred ecCChhhHHHHHHHHHHHHHHhcCcEeecccccccccCCCCC-----CCCCCChHHHHHhccCCcEEeccCchhHHhhhc
Q 012834 164 ANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSN-----FGDIFDEDFFMHALRSNVNVVKELPEDILQQFD 238 (455)
Q Consensus 164 ~nGGLNQqR~~IcDAVaVARiLNATLVlP~l~~~S~W~D~S~-----F~DIFDvdhFI~sL~~dVrIVk~LP~~~~~~~~ 238 (455)
+.||+||||.++++||++|++||+|||||.+...+.|+|.++ |+|+||+++|+++++++|.+.+.+|........
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 899999999999999999999999999999999999999988 999999999999999999999999876644221
Q ss_pred ccc-------------------------cceeeccccC-CCChhhhhhhhhhhhhhc------ceEEEccCCcccccC-C
Q 012834 239 HNI-------------------------SSIVNLRVKG-WSSPTHYLQKVLPKLQHL------GAVRIAPFSNRLAQG-V 285 (455)
Q Consensus 239 ~~~-------------------------~~i~~~~v~~-~s~~~yY~~~VLP~L~k~------~VI~l~~f~~RLa~~-l 285 (455)
... .....+.... |+.+.+|.++++|.+.++ +++.|.++..++.++ .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 100 0112222333 788999999999999887 999999999999876 7
Q ss_pred CCcchhhcccccccccccchhHHHHHHHHHHHHhhcccCCCCceEEEeecchhhhhhhhcccCCCChhHHHHHHHHHHhh
Q 012834 286 PSNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERS 365 (455)
Q Consensus 286 P~~iQrLRCrvnf~ALrF~p~I~~lg~~LV~Rmr~~s~~s~g~yIALHLRfE~DMlAfSgC~~~gg~~E~~eL~~~R~~~ 365 (455)
+.++|| +|+|+++|+++|++++++|+. .+++|||+|||+|+|| +++|.+++ ++.+|..+|..
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~----~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~- 227 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLA----GGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW- 227 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH--------SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH-
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhc----ccCceEEEeecccCch--HhhcccCC---chHHHHHhHhh-
Confidence 788887 999999999999999999992 4689999999999999 99999955 67788777764
Q ss_pred cccccccCCcccCCcccccCCCCCCChhHHHHHHHHhCCCCcceeeeecccccchHHHHHHHHHhhhhhhhhhh
Q 012834 366 WRGKFRKRGRVIRPGANRVDGKCPLTPLEVLNCIELSALPSINLLFNKFILIWFLVKYEYLLLKLCFVLLKNKF 439 (455)
Q Consensus 366 wk~k~~k~~~~i~~~~~R~~G~CPLTPeEvgl~LraLGf~~~T~iY~a~g~i~~~~~~~~~l~~~~~p~l~n~~ 439 (455)
.. ..+++.+.+..+.||++|+|++.+++++|+.+.|.||||++++|++.+.|.+|++ .||.+..|.
T Consensus 228 -~~------~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~-~~~~~~~~~ 293 (351)
T PF10250_consen 228 -GK------KSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKN-MFPNVVTKD 293 (351)
T ss_dssp --G------GGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HH-HHHHHHGGG
T ss_pred -cc------ccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHH-HhhhhEecc
Confidence 11 1567788999999999999999999999999999999999999999999999999 999877443
|
Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A. |
| >KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 455 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-07 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 6e-07
Identities = 79/438 (18%), Positives = 140/438 (31%), Gaps = 106/438 (24%)
Query: 71 YISVMLLYMSSF--GFDVVD----LKSVV-------VVRERAPPGSVYR--------SPQ 109
Y ++ ++ +F FD D KS++ ++ + R +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 110 VFQKLWPFMQAEAIANNT--LMTAWNSKVHQPWKP------CADR-SNSNAELPKSN--- 157
+ QK F++ E + N LM+ ++ QP DR N N K N
Sbjct: 78 MVQK---FVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 158 GFLIIEANGGLNQQRLSICDAVAVAGLLNA---TLVIPIFHLNSVWRDSSNFGDIFDEDF 214
++ L L V + G+L + + + V + + F
Sbjct: 134 LQPYLKLRQAL--LELRPAKNVLIDGVLGSGKTWVAL------DVCLSYKVQCKMDFKIF 185
Query: 215 FMHALRSNVNVVKELPEDILQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRI 274
+++ N N + + E +LQ+ + I R S+ + + +L+ L ++
Sbjct: 186 WLNL--KNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKS 240
Query: 275 APFSNRLAQGVPSNIQGLRCLANFE----AL---RFSEPIRMLAEKMVDRMVKNSSQSG- 326
P+ N L V N+Q + F L RF + L+ + +
Sbjct: 241 KPYENCLL--VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 327 ---------GKYVSVH---LRFET--------DMVAFSCCEYDGGEEEKREMDIARERSW 366
KY+ L E ++A E R+ +A +W
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA----------ESIRDG-LATWDNW 347
Query: 367 RG-KFRKRGRVIRPGANRVDGKCPLTPLEVLNC-IELSALP-SINLLFNKFILIWFLVKY 423
+ K +I N L P E LS P S ++ LIWF V
Sbjct: 348 KHVNCDKLTTIIESSLNV------LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 424 ---EYLLLKLCFVLLKNK 438
++ KL L K
Sbjct: 402 SDVMVVVNKLHKYSLVEK 419
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 455 | |||
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 98.34 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 97.11 |
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=4.2e-06 Score=84.60 Aligned_cols=70 Identities=21% Similarity=0.387 Sum_probs=54.8
Q ss_pred CCCCceEEEEec-C-ChhhHHHHHHHHHHHHHHhcCc----EeecccccccccCCCC------CCCCCCChHHHHHhccC
Q 012834 154 PKSNGFLIIEAN-G-GLNQQRLSICDAVAVAGLLNAT----LVIPIFHLNSVWRDSS------NFGDIFDEDFFMHALRS 221 (455)
Q Consensus 154 ~~snGYL~V~~n-G-GLNQqR~~IcDAVaVARiLNAT----LVlP~l~~~S~W~D~S------~F~DIFDvdhFI~sL~~ 221 (455)
...++||+-..| | |.|.||...-.|.++|+.||.| ||||-...---|+-.+ .|++.||++.+ +.
T Consensus 19 ~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~ 94 (408)
T 4ap5_A 19 ASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NK 94 (408)
T ss_dssp -CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HT
T ss_pred ccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hh
Confidence 467899999975 5 8999999999999999999999 9999664333355332 49999999865 45
Q ss_pred CcEEec
Q 012834 222 NVNVVK 227 (455)
Q Consensus 222 dVrIVk 227 (455)
.|+||.
T Consensus 95 ~vpVI~ 100 (408)
T 4ap5_A 95 NIPVIE 100 (408)
T ss_dssp TSCEEE
T ss_pred hCCeeE
Confidence 667764
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00