Citrus Sinensis ID: 012850
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 455 | ||||||
| 224110284 | 466 | predicted protein [Populus trichocarpa] | 0.997 | 0.974 | 0.689 | 0.0 | |
| 359477333 | 465 | PREDICTED: uncharacterized protein LOC10 | 0.995 | 0.974 | 0.675 | 1e-178 | |
| 147865781 | 1050 | hypothetical protein VITISV_020812 [Viti | 0.997 | 0.432 | 0.671 | 1e-178 | |
| 255556596 | 466 | conserved hypothetical protein [Ricinus | 0.997 | 0.974 | 0.644 | 1e-158 | |
| 357449221 | 468 | hypothetical protein MTR_2g035830 [Medic | 1.0 | 0.972 | 0.606 | 1e-157 | |
| 297833468 | 479 | PDE320 [Arabidopsis lyrata subsp. lyrata | 0.997 | 0.947 | 0.570 | 1e-155 | |
| 18397783 | 479 | protein pigment defective 320 [Arabidops | 0.997 | 0.947 | 0.570 | 1e-155 | |
| 356556155 | 468 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.961 | 0.614 | 1e-152 | |
| 449518839 | 470 | PREDICTED: uncharacterized protein LOC10 | 0.997 | 0.965 | 0.543 | 1e-136 | |
| 449441494 | 470 | PREDICTED: uncharacterized protein LOC10 | 0.997 | 0.965 | 0.543 | 1e-136 |
| >gi|224110284|ref|XP_002315471.1| predicted protein [Populus trichocarpa] gi|222864511|gb|EEF01642.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/467 (68%), Positives = 370/467 (79%), Gaps = 13/467 (2%)
Query: 1 MKKLRWAMEGEFWELDQSTPKSLEGSARAVPGNPNPLGISRGTRLSRPKQIDFMQRFMAT 60
M KLRWAM+G FW+LD+STP++LEG RAVPG P PLG+SRGTRLSRPKQIDF QRFM
Sbjct: 1 MNKLRWAMDGGFWDLDRSTPRTLEGEGRAVPGEPLPLGVSRGTRLSRPKQIDFFQRFMFA 60
Query: 61 PFLPSFSAGT--LQLQRVLPFQFSGDWFATLLGQFNVLKFVSSLKQ-GELSKSRCLHA-- 115
PF+PS+SA + L LQRVL F+ DWFATLL QFN+ KFVSS K+ G L SR +
Sbjct: 61 PFIPSYSASSHGLSLQRVLALPFTQDWFATLLAQFNLQKFVSSFKKNGALQSSRLENIRK 120
Query: 116 -LRDKSLYALGFCSELLFTDDDTLLLSYDSYGHNNTS--RKKAVFCHK--FPNHNFTLEA 170
L DKSLYALGFCSELL + DTLLLS D YG +N RKKA+F HK FPNHN +EA
Sbjct: 121 HLEDKSLYALGFCSELLLSPCDTLLLSLDFYGDDNNKKPRKKAIFHHKACFPNHNLNVEA 180
Query: 171 LWPGLFVDKCGNYWDVPFSMAADLASVASDSGPSYHLTMHHNSGLPTQFEGDENSSAVPA 230
+WPGL++DK GNYWDVPFSMA DLAS+ASDSG SYH MHH++G P Q GDE + VPA
Sbjct: 181 VWPGLYIDKAGNYWDVPFSMAIDLASLASDSGASYHFCMHHSAGQPMQLGGDE-TVEVPA 239
Query: 231 SLLPGFSLKNAVAYKKNVDIWRSKAQKLKMVQPYDIFLSSPHVSASGIIGAAMTASIGDN 290
+LLPG SLK+A + KKNV+IWRS AQKLKMVQP+DIFLS+PH+SASG+IGAA+ A GDN
Sbjct: 240 TLLPGISLKSAFSLKKNVEIWRSNAQKLKMVQPFDIFLSNPHISASGVIGAAVMACFGDN 299
Query: 291 SVRSPVENDSDGSTGFHLHAADIKSSFSADIFGSVAFTAQHGNFQRLFSDLTRFHARLDF 350
SVR V ++S GF LHA +KS+ D F SV+FTAQHGNFQRL DLTRFHARLDF
Sbjct: 300 SVRPQVVDESQQFEGFCLHAPAVKSTLLVDTFSSVSFTAQHGNFQRLLLDLTRFHARLDF 359
Query: 351 PSGSKFLSGATRLAQDYFNSQRPSLETVQAVCPKVFFSVQQQIAGPFSFRVDSGVVIDLK 410
PS SKFLSGA RLAQD+ NSQRP++ETVQA+CPK S QQQIAGPFSFRVDSGV ID K
Sbjct: 360 PSASKFLSGAIRLAQDFCNSQRPTMETVQAICPKATVSFQQQIAGPFSFRVDSGVEIDWK 419
Query: 411 NRD--ICAHDSVFAIEYALQVLGSAKAVAWYAPKHQEFMIELRFFES 455
N+D +C D VFAIEYAL VLGSAKAVAWY+PKH+EFM+ELRFFE+
Sbjct: 420 NKDWHMCVDDPVFAIEYALHVLGSAKAVAWYSPKHREFMVELRFFET 466
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477333|ref|XP_003631965.1| PREDICTED: uncharacterized protein LOC100853208 [Vitis vinifera] gi|297736817|emb|CBI26018.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147865781|emb|CAN81147.1| hypothetical protein VITISV_020812 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255556596|ref|XP_002519332.1| conserved hypothetical protein [Ricinus communis] gi|223541647|gb|EEF43196.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|357449221|ref|XP_003594887.1| hypothetical protein MTR_2g035830 [Medicago truncatula] gi|355483935|gb|AES65138.1| hypothetical protein MTR_2g035830 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|297833468|ref|XP_002884616.1| PDE320 [Arabidopsis lyrata subsp. lyrata] gi|297330456|gb|EFH60875.1| PDE320 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|18397783|ref|NP_566296.1| protein pigment defective 320 [Arabidopsis thaliana] gi|6729003|gb|AAF27000.1|AC016827_11 hypothetical protein [Arabidopsis thaliana] gi|14194139|gb|AAK56264.1|AF367275_1 AT3g06960/F17A9_11 [Arabidopsis thaliana] gi|16323342|gb|AAL15384.1| AT3g06960/F17A9_11 [Arabidopsis thaliana] gi|332640959|gb|AEE74480.1| protein pigment defective 320 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356556155|ref|XP_003546392.1| PREDICTED: uncharacterized protein LOC100793455 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449518839|ref|XP_004166443.1| PREDICTED: uncharacterized protein LOC101225023 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449441494|ref|XP_004138517.1| PREDICTED: uncharacterized protein LOC101205565 [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 455 | ||||||
| TAIR|locus:2077562 | 479 | PDE320 "PIGMENT DEFECTIVE 320" | 0.848 | 0.805 | 0.549 | 2.4e-142 | |
| TAIR|locus:2042361 | 451 | AT2G44640 "AT2G44640" [Arabido | 0.830 | 0.838 | 0.331 | 2.4e-53 |
| TAIR|locus:2077562 PDE320 "PIGMENT DEFECTIVE 320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1097 (391.2 bits), Expect = 2.4e-142, Sum P(2) = 2.4e-142
Identities = 221/402 (54%), Positives = 274/402 (68%)
Query: 69 GTLQLQRVLPFQFSGDWFATLLGQFNVLKFVSSLKQ----GELSKSRC---LHA----LR 117
G LQRVL FS +W +LLGQF+V +FV+ + + G S S L+ L+
Sbjct: 79 GGFSLQRVLTLPFSNNWLVSLLGQFDVQRFVTEIDKTKAFGRGSSSTVASRLNTIGKHLK 138
Query: 118 DKSLYALGFCSEXXXX-XXXXXXXXXXXXGH-NNTSRKKAVFCHKFPNHNFTLEALWPGL 175
DKSLYALGFCSE G + R KA+F H+FP HN T EA+WPGL
Sbjct: 139 DKSLYALGFCSEFLLSPDDTLLLSYDAYKGDLDKNPRAKAIFNHEFPLHNLTAEAVWPGL 198
Query: 176 FVDKCGNYWDVPFSMAADLASVASDSGPSYHLTMHHNSGLPTQFEGDENSSAVPASLLPG 235
FVDK G YWDVP SMA DLAS+ ++SGPSYHL +HHNSG P + D P SLLPG
Sbjct: 199 FVDKHGEYWDVPLSMAIDLASLPAESGPSYHLCLHHNSGSPKKLHSD-TMEVPPPSLLPG 257
Query: 236 FSLKNAVAYKKNVDIWRSKAQKLKMVQPYDIFLSSPHVSASGIIGAAMTASIGDNSVRSP 295
SLK+AV+Y+ N+D+WR KL+ +PYD+FLSSPHV+ SGIIG+ MTA+ G+NS+RS
Sbjct: 258 LSLKSAVSYRTNMDLWRGTTPKLETCKPYDVFLSSPHVAVSGIIGSVMTAAFGENSIRSK 317
Query: 296 VENDSDGSTGFHLHAADIKSSFSADIFGSVAFTAQHGNFQRLFSDLTRFHARLDFPSGSK 355
ENDS+G GF LH + S F AD G + TAQ+GNFQ+ F DLTRFHARLDFP G +
Sbjct: 318 FENDSEGVGGFSLHFPSVNSGFMADALGRASLTAQYGNFQKFFFDLTRFHARLDFPHGLR 377
Query: 356 FLSGATRLAQDYFNSQRPSLETVQAVCPKVFFSVQQQIAGPFSFRVDSGVVIDLKN--RD 413
FL+GAT +AQD NS++PSLE Q +CP+V S+QQQI GPFSF+V+SG+ IDL+N
Sbjct: 378 FLTGATSVAQDLLNSRQPSLEAFQKICPEVLVSLQQQIVGPFSFKVESGIEIDLRNGANP 437
Query: 414 ICAHDSVFAIEYALQVLGSAKAVAWYAPKHQEFMIELRFFES 455
+ +VFAIEYALQVL SAKAV Y+PK EFM+ELRFFE+
Sbjct: 438 VTVDKTVFAIEYALQVLLSAKAVVSYSPKQNEFMVELRFFET 479
|
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| TAIR|locus:2042361 AT2G44640 "AT2G44640" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| estExt_fgenesh4_pm.C_LG_X0017 | hypothetical protein (467 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 455 | |||
| PF12600 | 451 | DUF3769: Protein of unknown function (DUF3769); In | 100.0 |
| >PF12600 DUF3769: Protein of unknown function (DUF3769); InterPro: IPR022244 This family of proteins is found in bacteria and eukaryotes | Back alignment and domain information |
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Probab=100.00 E-value=2.7e-74 Score=596.61 Aligned_cols=351 Identities=23% Similarity=0.307 Sum_probs=299.6
Q ss_pred ccccchhhhhhcccCCCCc-----------------cCcCCC---ceEEeeeccccc-CCceEEEEeeceehhhhhhhcc
Q 012850 45 LSRPKQIDFMQRFMATPFL-----------------PSFSAG---TLQLQRVLPFQF-SGDWFATLLGQFNVLKFVSSLK 103 (455)
Q Consensus 45 l~R~qQl~~~qrf~~~P~~-----------------PSf~~~---Gl~lqr~~~~~~-~~nw~~tlt~Qf~~Qk~is~~~ 103 (455)
.++-.+|.|.|++ ++|+. ..||.. ||+|+|.|..+. ++|||++|||||++||+|....
T Consensus 59 ~~~~~rLv~dq~~-~iP~~~~~~~~d~~~~~~~~~~~G~D~~Dr~Glfi~R~~~~i~~~~~~~l~ltPQfliQRAi~g~t 137 (451)
T PF12600_consen 59 KSSRNRLVFDQRL-SIPIPRRRLIIDRREREPNRWSFGYDNDDRDGLFIGRNFNPINLTPNWWLTLTPQFLIQRAINGET 137 (451)
T ss_pred EEccceEEEeccc-ccceecceeecccccccCCceEEeeccCcCCeEEEeccccccccCCcEEEEEeehhheehhhcccc
Confidence 3455678888887 45541 336643 999999999998 9999999999999999998844
Q ss_pred ccccccccc-CccCCCCcccccceeeeeeccCCceEEE-----EeeecCCCccccceEEEEeecC-----CceEEEEeec
Q 012850 104 QGELSKSRC-LHALRDKSLYALGFCSELLFTDDDTLLL-----SYDSYGHNNTSRKKAVFCHKFP-----NHNFTLEALW 172 (455)
Q Consensus 104 ~~~~~~~~~-~~~l~D~SlyalG~~s~~~l~~~ttL~~-----sle~~~~~~~~R~k~~l~hklp-----~H~Lt~Eas~ 172 (455)
....+...+ +..+ +++|+|+.+.+.+++|++++.+ |++.+++++..|.|..++|++. .|++++||+|
T Consensus 138 ~s~~~~~~~~~~~l--~dlFGL~a~l~~~l~~~~~l~~~a~lsSfd~~~~~~~~R~~~~l~~~i~~~~~~~~~l~l~~~Y 215 (451)
T PF12600_consen 138 NSYVNPGVKQDNNL--PDLFGLKARLNGNLGPNTSLEGSAELSSFDPDNFENGLRSSSRLRQKIGLPLNNPHDLNLEYAY 215 (451)
T ss_pred ccccCCCccccCch--hhheeEEEEEecccCCceEEEeeeEecccCcchhhhhhccchhhhcccCCccCCCceEEEEEee
Confidence 444333322 4444 7899777777778999999976 6788889999999999999998 8999999999
Q ss_pred CceeecCCCCeEEeccceeEEEeccC----CCCCc--eEEEeeeecCCCCcccCCCCCCCCCCCCCCCCceeeeEEeeee
Q 012850 173 PGLFVDKCGNYWDVPFSMAADLASVA----SDSGP--SYHLTMHHNSGLPTQFEGDENSSAVPASLLPGFSLKNAVAYKK 246 (455)
Q Consensus 173 rerf~d~~~gy~dVp~S~~~~laS~~----~~sGl--sY~~g~~~~~g~p~~~~~~~~t~r~P~~LLPg~~~qaa~S~~k 246 (455)
|||++||++|||||++|+|+.|.|++ +++|+ +||+++|+++++.+.++. +.+ .+..|+|+++||++
T Consensus 216 R~R~~NGsLG~q~V~ss~G~~l~s~~~~~~~~~gl~~~Y~~~~~~~n~~td~~~~---~~~-----~~l~R~q~~~Sl~~ 287 (451)
T PF12600_consen 216 RERLWNGSLGFQDVYSSYGGVLESPGIWPLGNGGLNLSYQWSVQLGNAQTDRFRS---NNL-----VPLWRAQAAASLNK 287 (451)
T ss_pred eeeeecCCcCcEEEehhcceEEeccceecccCCCeeEEEEEEeeeeccccccCCC---CCc-----CccceEEEEEEccc
Confidence 99999999999999999999999988 46776 999999999886555433 333 46679999999999
Q ss_pred ceeeccccccc--cccCCCceeeccCceeeEeeeeeeeEEEEecCCcccCCcCCCCCCCCcccccccccccccccceeEe
Q 012850 247 NVDIWRSKAQK--LKMVQPYDIFLSSPHVSASGIIGAAMTASIGDNSVRSPVENDSDGSTGFHLHAADIKSSFSADIFGS 324 (455)
Q Consensus 247 ~~~LWrg~~~~--~~~~~~Y~~~p~~P~v~~sGiiG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adlfgS 324 (455)
+++||++|++| +++.+||++.|++|||++.+.+.++ .++|+|++. +++++||
T Consensus 288 ~~~LW~gk~lp~t~~~~lrYsp~PivP~l~l~t~l~~~-~s~Y~nGd~-------------------------Q~~l~~s 341 (451)
T PF12600_consen 288 SFPLWRGKPLPPTPEEGLRYSPRPIVPGLSLNTGLTGV-YSFYSNGDS-------------------------QNSLFGS 341 (451)
T ss_pred cceeecCCCCCCCCCcCCCCCcccccCcEEEEeccccc-cccccCCCc-------------------------ceeeEEe
Confidence 99999999998 5779999999999999999988887 566666644 3579999
Q ss_pred EEEEEEecccccccccceeeeeeeecCCCCccccccchhhhhhhccCCCCchhhhccCCeEEEEEeeeEeeceEEEEeee
Q 012850 325 VAFTAQHGNFQRLFSDLTRFHARLDFPSGSKFLSGATRLAQDYFNSQRPSLETVQAVCPKVFFSVQQQIAGPFSFRVDSG 404 (455)
Q Consensus 325 v~~taQ~G~FsR~flDyTrf~~rld~~s~s~fL~gas~la~~~~~~~~~~~~~~~~~~p~l~l~lqQQI~GP~rfrv~s~ 404 (455)
+|+++|+|||+|+|||||+|+++|+++ ++.|+|| |.+++.+|.. +|+++|+|||||||+|+||++
T Consensus 342 ~g~~~q~G~Fsr~~~DyT~~~~~~~~~----~~~g~Sp----f~fD~~~d~~-------~l~~~~~QQi~GP~~~~~~~~ 406 (451)
T PF12600_consen 342 VGPTGQLGNFSRPFLDYTRFSIRYSQT----LKSGASP----FLFDRIVDLP-------TLSLGLTQQIYGPLRFGVQSS 406 (451)
T ss_pred eeeEEEEccccccccccceEeeeecce----eccCCCc----cccccccccc-------eEEEEEEEEeeCCEEEeeeeE
Confidence 999999999999999999999999755 5889999 6677777777 999999999999999999999
Q ss_pred EEeecCCCceeecccEEEEEeehhhcCcceEEEEeccccccceEEEEeec
Q 012850 405 VVIDLKNRDICAHDSVFAIEYALQVLGSAKAVAWYAPKHQEFMIELRFFE 454 (455)
Q Consensus 405 ~sid~~~~~i~~~d~vy~leyslrtlgSak~vawYnP~rqegmveLRife 454 (455)
++||+ |+ +.|+.|.|||+||+|+ +++||||++|+||++|||+|
T Consensus 407 ~nld~--g~--~i~t~~~L~~sRRsY~---i~~~YnP~~~~Ggi~fRl~d 449 (451)
T PF12600_consen 407 INLDS--GE--EINTDYSLEYSRRSYG---IGLRYNPVRQIGGISFRLND 449 (451)
T ss_pred EEcCC--Cc--EeeeeEEEEEEeeecc---EEEEECcccccccEEEEecc
Confidence 99997 77 3345599999999997 99999999999999999986
|
Proteins in this family are typically between 560 and 931 amino acids in length. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00