Citrus Sinensis ID: 012850


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-----
MKKLRWAMEGEFWELDQSTPKSLEGSARAVPGNPNPLGISRGTRLSRPKQIDFMQRFMATPFLPSFSAGTLQLQRVLPFQFSGDWFATLLGQFNVLKFVSSLKQGELSKSRCLHALRDKSLYALGFCSELLFTDDDTLLLSYDSYGHNNTSRKKAVFCHKFPNHNFTLEALWPGLFVDKCGNYWDVPFSMAADLASVASDSGPSYHLTMHHNSGLPTQFEGDENSSAVPASLLPGFSLKNAVAYKKNVDIWRSKAQKLKMVQPYDIFLSSPHVSASGIIGAAMTASIGDNSVRSPVENDSDGSTGFHLHAADIKSSFSADIFGSVAFTAQHGNFQRLFSDLTRFHARLDFPSGSKFLSGATRLAQDYFNSQRPSLETVQAVCPKVFFSVQQQIAGPFSFRVDSGVVIDLKNRDICAHDSVFAIEYALQVLGSAKAVAWYAPKHQEFMIELRFFES
cccccccccccccccccccccccccEEEEccccccccccccccccccHHHHHHHHHccccccccccccccEEEEEEccccccccEEEEEEEcEEEEEEEHHccccccccccccccccccccccccccEEEEcccccEEEEccccccccccccccEEEEEcccccEEEEEEEcccEEEEccccEEEcccEEEEEEEccccccccEEEEEEEEcccccccccccccccccccccccccEEEEEEEEEcccEEcccccccccccccccccccccEEEEEEEEEEEEEEEccccccccccccccccccccccccccccccccEEEEEEEEEEEEEccccccccccccEEEEEccccccccccccHHHcccccccccccHHHHHccccEEEEEEEEEEEccEEEEEEEEEEEEcccccccccccEEEEEEEcccccccEEEEEEcccccccEEEEEEccc
cccHHHHHcccccccccccccccccEEccccccccccccccccccccHHHHHHHHHHccccccccccccccEHHHHHHccccccHHHHHHHcccHHHHHHHHHHccccccHHHHHHHccHHHHEccccEEEEccccEEEEEEcccccccccccEEEEEEccccccEEEEEEccccEEcccccEEccccEEEEEEcccccccccEEEEEEEccccccccccccccccccccHcccccHHHHHEEHHHccHHHcccHHHcccccccccccccccEEEEEHHHHHHHHHccccccccccccccccccccEEccccccccHHHHHEEEEEEEccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHccccccHHHHHHccccEEEEEEEEEEccEEEEEccEEEEcccccccccccHEEEHHHHHHHHcccEEEEEEcccccHHEEEEEEccc
MKKLRWAmegefweldqstpkslegsaravpgnpnplgisrgtrlsrpkqIDFMQRfmatpflpsfsagtlqlqrvlpfqfsgDWFATLLGQFNVLKFVSSLkqgelsksrclhalrdksLYALGFCsellftdddtlllsydsyghnntsrkkavfchkfpnhnftlealwpglfvdkcgnywdvpFSMAADLAsvasdsgpsyhltmhhnsglptqfegdenssavpasllpgfslKNAVAYKKNVDIWRSKAQKlkmvqpydiflssphvsasgiIGAAMTasigdnsvrspvendsdgstgfhlhaadikssfsadifgSVAFTAQHGNFQRLFSDLTRfharldfpsgskflsGATRLAQDyfnsqrpsletvqAVCPKVFFSVQQqiagpfsfrvdsgvvidlknrdicahdSVFAIEYALQVLGSAKAVAWYAPKHQEFMIELRFFES
mkklrwamegefweldqstpkslegsaravpgnpnplgisrgtrLSRPKQIDFMQRFMATPFLPSFSAGTLQLQRVLPFQFSGDWFATLLGQFNVLKFVSSLKQGELSKSRCLHALRDKSLYALGFCSELLFTDDDTLLLSYDSYGHNNTSRKKAVFCHKFPNHNFTLEALWPGLFVDKCGNYWDVPFSMAADLASVASDSGPSYHLTMHHNSGLPTQFEGDENSSAVPASLLPGFSLKNAVAYKKNVDIWRSKAQKLKMVQPYDIFLSSPHVSASGIIGAAMTASIGDNSVRSPVENDSDGSTGFHLHAADIKSSFSADIFGSVAFTAQHGNFQRLFSDLTRFHARLDFPSGSKFLSGATRLAQDYFNSQRPSLETVQAVCPKVFFSVQQQIAGPFSFRVDSGVVIDLKNRDICAHDSVFAIEYALQVLGSAKAVAWYAPKHQEFMIELRFFES
MKKLRWAMEGEFWELDQSTPKSLEGSARAVPGNPNPLGISRGTRLSRPKQIDFMQRFMATPFLPSFSAGTLQLQRVLPFQFSGDWFATLLGQFNVLKFVSSLKQGELSKSRCLHALRDKSLYALGFCSEllftdddtlllsydsyGHNNTSRKKAVFCHKFPNHNFTLEALWPGLFVDKCGNYWDVPFSMAADLASVASDSGPSYHLTMHHNSGLPTQFEGDENSSAVPASLLPGFSLKNAVAYKKNVDIWRSKAQKLKMVQPYDIFLSSPHVSASGIIGAAMTASIGDNSVRSPVENDSDGSTGFHLHAADIKSSFSADIFGSVAFTAQHGNFQRLFSDLTRFHARLDFPSGSKFLSGATRLAQDYFNSQRPSLETVQAVCPKVFFSVQQQIAGPFSFRVDSGVVIDLKNRDICAHDSVFAIEYALQVLGSAKAVAWYAPKHQEFMIELRFFES
**************************************************IDFMQRFMATPFLPSFSAGTLQLQRVLPFQFSGDWFATLLGQFNVLKFVSSLKQGELSKSRCLHALRDKSLYALGFCSELLFTDDDTLLLSYDSYGHNNTSRKKAVFCHKFPNHNFTLEALWPGLFVDKCGNYWDVPFSMAADLAS***********************************LLPGFSLKNAVAYKKNVDIWRSKAQKLKMVQPYDIFLSSPHVSASGIIGAAMT*********************FHLHAADIKSSFSADIFGSVAFTAQHGNFQRLFSDLTRFHARLDFPSGSKFLSGATRLAQDYFNSQRPSLETVQAVCPKVFFSVQQQIAGPFSFRVDSGVVIDLKNRDICAHDSVFAIEYALQVLGSAKAVAWYAPKHQEFMIELRFF**
*********GEFWELDQSTPKSLEGSARAVPGNPN*************KQIDFMQRFMATPFLPSFSAGTLQLQRVLPFQFSGDWFATLLGQFNVLKFVSS************HALRDKSLYALGFCSELLFTDDDTLLLSYDSYGHNNTSRKKAVFCHKFPNHNFTLEALWPGLFVDKCGNYWDVPFSMAADLASVASDSGPSYHLTMHHNSG*******************PGFSLKNAVAYKKNVDIWRS*A********Y**FLSSPHVSASGIIGAAMTAS**********************HAADIKSSFSADIFGSVAFTAQHGNFQRLFSDLTRFHARLDFPSGSKF*********************VQAVCPKVFFSVQQQIAGPFSFRVDSGVVIDLKNRDICAHDSVFAIEYALQVLGSAKAVAWYAPKHQEFMIELRFFES
MKKLRWAMEGEFWELDQSTPKSLEGSARAVPGNPNPLGISRGTRLSRPKQIDFMQRFMATPFLPSFSAGTLQLQRVLPFQFSGDWFATLLGQFNVLKFVSSLKQGELSKSRCLHALRDKSLYALGFCSELLFTDDDTLLLSYDSYGHNNTSRKKAVFCHKFPNHNFTLEALWPGLFVDKCGNYWDVPFSMAADLASVASDSGPSYHLTMHHNSGLPTQFEGDENSSAVPASLLPGFSLKNAVAYKKNVDIWRSKAQKLKMVQPYDIFLSSPHVSASGIIGAAMTASIGDNSVRSPVENDSDGSTGFHLHAADIKSSFSADIFGSVAFTAQHGNFQRLFSDLTRFHARLDFPSGSKFLSGATRLAQDYFNSQRPSLETVQAVCPKVFFSVQQQIAGPFSFRVDSGVVIDLKNRDICAHDSVFAIEYALQVLGSAKAVAWYAPKHQEFMIELRFFES
************WELDQSTPKSLEGSARAVPGNPNPLGISRGTRLSRPKQIDFMQRFMATPFLPSFSAGTLQLQRVLPFQFSGDWFATLLGQFNVLKFVSSLKQGELSKSRCLHALRDKSLYALGFCSELLFTDDDTLLLSYDSYGHNNTSRKKAVFCHKFPNHNFTLEALWPGLFVDKCGNYWDVPFSMAADLASVASDSGPSYHLTMHHNSGLPTQFEGDENSSAVPASLLPGFSLKNAVAYKKNVDIWRSKAQKLKMVQPYDIFLSSPHVSASGIIGAAMTASIGDNSVRSP*******STGFHLHAADIKSSFSADIFGSVAFTAQHGNFQRLFSDLTRFHARLDFPSGSKFLSGATRLAQDYFNSQRPSLETVQAVCPKVFFSVQQQIAGPFSFRVDSGVVIDLKNRDICAHDSVFAIEYALQVLGSAKAVAWYAPKHQEFMIELRFFES
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MKKLRWAMEGEFWELDQSTPKSLEGSARAVPGNPNPLGISRGTRLSRPKQIDFMQRFMATPFLPSFSAGTLQLQRVLPFQFSGDWFATLLGQFNVLKFVSSLKQGELSKSRCLHALRDKSLYALGFCSELLFTDDDTLLLSYDSYGHNNTSRKKAVFCHKFPNHNFTLEALWPGLFVDKCGNYWDVPFSMAADLASVASDSGPSYHLTMHHNSGLPTQFEGDENSSAVPASLLPGFSLKNAVAYKKNVDIWRSKAQKLKMVQPYDIFLSSPHVSASGIIGAAMTASIGDNSVRSPVENDSDGSTGFHLHAADIKSSFSADIFGSVAFTAQHGNFQRLFSDLTRFHARLDFPSGSKFLSGATRLAQDYFNSQRPSLETVQAVCPKVFFSVQQQIAGPFSFRVDSGVVIDLKNRDICAHDSVFAIEYALQVLGSAKAVAWYAPKHQEFMIELRFFES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
224110284466 predicted protein [Populus trichocarpa] 0.997 0.974 0.689 0.0
359477333465 PREDICTED: uncharacterized protein LOC10 0.995 0.974 0.675 1e-178
147865781 1050 hypothetical protein VITISV_020812 [Viti 0.997 0.432 0.671 1e-178
255556596466 conserved hypothetical protein [Ricinus 0.997 0.974 0.644 1e-158
357449221468 hypothetical protein MTR_2g035830 [Medic 1.0 0.972 0.606 1e-157
297833468479 PDE320 [Arabidopsis lyrata subsp. lyrata 0.997 0.947 0.570 1e-155
18397783479 protein pigment defective 320 [Arabidops 0.997 0.947 0.570 1e-155
356556155468 PREDICTED: uncharacterized protein LOC10 0.989 0.961 0.614 1e-152
449518839470 PREDICTED: uncharacterized protein LOC10 0.997 0.965 0.543 1e-136
449441494470 PREDICTED: uncharacterized protein LOC10 0.997 0.965 0.543 1e-136
>gi|224110284|ref|XP_002315471.1| predicted protein [Populus trichocarpa] gi|222864511|gb|EEF01642.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/467 (68%), Positives = 370/467 (79%), Gaps = 13/467 (2%)

Query: 1   MKKLRWAMEGEFWELDQSTPKSLEGSARAVPGNPNPLGISRGTRLSRPKQIDFMQRFMAT 60
           M KLRWAM+G FW+LD+STP++LEG  RAVPG P PLG+SRGTRLSRPKQIDF QRFM  
Sbjct: 1   MNKLRWAMDGGFWDLDRSTPRTLEGEGRAVPGEPLPLGVSRGTRLSRPKQIDFFQRFMFA 60

Query: 61  PFLPSFSAGT--LQLQRVLPFQFSGDWFATLLGQFNVLKFVSSLKQ-GELSKSRCLHA-- 115
           PF+PS+SA +  L LQRVL   F+ DWFATLL QFN+ KFVSS K+ G L  SR  +   
Sbjct: 61  PFIPSYSASSHGLSLQRVLALPFTQDWFATLLAQFNLQKFVSSFKKNGALQSSRLENIRK 120

Query: 116 -LRDKSLYALGFCSELLFTDDDTLLLSYDSYGHNNTS--RKKAVFCHK--FPNHNFTLEA 170
            L DKSLYALGFCSELL +  DTLLLS D YG +N    RKKA+F HK  FPNHN  +EA
Sbjct: 121 HLEDKSLYALGFCSELLLSPCDTLLLSLDFYGDDNNKKPRKKAIFHHKACFPNHNLNVEA 180

Query: 171 LWPGLFVDKCGNYWDVPFSMAADLASVASDSGPSYHLTMHHNSGLPTQFEGDENSSAVPA 230
           +WPGL++DK GNYWDVPFSMA DLAS+ASDSG SYH  MHH++G P Q  GDE +  VPA
Sbjct: 181 VWPGLYIDKAGNYWDVPFSMAIDLASLASDSGASYHFCMHHSAGQPMQLGGDE-TVEVPA 239

Query: 231 SLLPGFSLKNAVAYKKNVDIWRSKAQKLKMVQPYDIFLSSPHVSASGIIGAAMTASIGDN 290
           +LLPG SLK+A + KKNV+IWRS AQKLKMVQP+DIFLS+PH+SASG+IGAA+ A  GDN
Sbjct: 240 TLLPGISLKSAFSLKKNVEIWRSNAQKLKMVQPFDIFLSNPHISASGVIGAAVMACFGDN 299

Query: 291 SVRSPVENDSDGSTGFHLHAADIKSSFSADIFGSVAFTAQHGNFQRLFSDLTRFHARLDF 350
           SVR  V ++S    GF LHA  +KS+   D F SV+FTAQHGNFQRL  DLTRFHARLDF
Sbjct: 300 SVRPQVVDESQQFEGFCLHAPAVKSTLLVDTFSSVSFTAQHGNFQRLLLDLTRFHARLDF 359

Query: 351 PSGSKFLSGATRLAQDYFNSQRPSLETVQAVCPKVFFSVQQQIAGPFSFRVDSGVVIDLK 410
           PS SKFLSGA RLAQD+ NSQRP++ETVQA+CPK   S QQQIAGPFSFRVDSGV ID K
Sbjct: 360 PSASKFLSGAIRLAQDFCNSQRPTMETVQAICPKATVSFQQQIAGPFSFRVDSGVEIDWK 419

Query: 411 NRD--ICAHDSVFAIEYALQVLGSAKAVAWYAPKHQEFMIELRFFES 455
           N+D  +C  D VFAIEYAL VLGSAKAVAWY+PKH+EFM+ELRFFE+
Sbjct: 420 NKDWHMCVDDPVFAIEYALHVLGSAKAVAWYSPKHREFMVELRFFET 466




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477333|ref|XP_003631965.1| PREDICTED: uncharacterized protein LOC100853208 [Vitis vinifera] gi|297736817|emb|CBI26018.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147865781|emb|CAN81147.1| hypothetical protein VITISV_020812 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255556596|ref|XP_002519332.1| conserved hypothetical protein [Ricinus communis] gi|223541647|gb|EEF43196.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357449221|ref|XP_003594887.1| hypothetical protein MTR_2g035830 [Medicago truncatula] gi|355483935|gb|AES65138.1| hypothetical protein MTR_2g035830 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297833468|ref|XP_002884616.1| PDE320 [Arabidopsis lyrata subsp. lyrata] gi|297330456|gb|EFH60875.1| PDE320 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18397783|ref|NP_566296.1| protein pigment defective 320 [Arabidopsis thaliana] gi|6729003|gb|AAF27000.1|AC016827_11 hypothetical protein [Arabidopsis thaliana] gi|14194139|gb|AAK56264.1|AF367275_1 AT3g06960/F17A9_11 [Arabidopsis thaliana] gi|16323342|gb|AAL15384.1| AT3g06960/F17A9_11 [Arabidopsis thaliana] gi|332640959|gb|AEE74480.1| protein pigment defective 320 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356556155|ref|XP_003546392.1| PREDICTED: uncharacterized protein LOC100793455 [Glycine max] Back     alignment and taxonomy information
>gi|449518839|ref|XP_004166443.1| PREDICTED: uncharacterized protein LOC101225023 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449441494|ref|XP_004138517.1| PREDICTED: uncharacterized protein LOC101205565 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
TAIR|locus:2077562479 PDE320 "PIGMENT DEFECTIVE 320" 0.848 0.805 0.549 2.4e-142
TAIR|locus:2042361451 AT2G44640 "AT2G44640" [Arabido 0.830 0.838 0.331 2.4e-53
TAIR|locus:2077562 PDE320 "PIGMENT DEFECTIVE 320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1097 (391.2 bits), Expect = 2.4e-142, Sum P(2) = 2.4e-142
 Identities = 221/402 (54%), Positives = 274/402 (68%)

Query:    69 GTLQLQRVLPFQFSGDWFATLLGQFNVLKFVSSLKQ----GELSKSRC---LHA----LR 117
             G   LQRVL   FS +W  +LLGQF+V +FV+ + +    G  S S     L+     L+
Sbjct:    79 GGFSLQRVLTLPFSNNWLVSLLGQFDVQRFVTEIDKTKAFGRGSSSTVASRLNTIGKHLK 138

Query:   118 DKSLYALGFCSEXXXX-XXXXXXXXXXXXGH-NNTSRKKAVFCHKFPNHNFTLEALWPGL 175
             DKSLYALGFCSE                 G  +   R KA+F H+FP HN T EA+WPGL
Sbjct:   139 DKSLYALGFCSEFLLSPDDTLLLSYDAYKGDLDKNPRAKAIFNHEFPLHNLTAEAVWPGL 198

Query:   176 FVDKCGNYWDVPFSMAADLASVASDSGPSYHLTMHHNSGLPTQFEGDENSSAVPASLLPG 235
             FVDK G YWDVP SMA DLAS+ ++SGPSYHL +HHNSG P +   D      P SLLPG
Sbjct:   199 FVDKHGEYWDVPLSMAIDLASLPAESGPSYHLCLHHNSGSPKKLHSD-TMEVPPPSLLPG 257

Query:   236 FSLKNAVAYKKNVDIWRSKAQKLKMVQPYDIFLSSPHVSASGIIGAAMTASIGDNSVRSP 295
              SLK+AV+Y+ N+D+WR    KL+  +PYD+FLSSPHV+ SGIIG+ MTA+ G+NS+RS 
Sbjct:   258 LSLKSAVSYRTNMDLWRGTTPKLETCKPYDVFLSSPHVAVSGIIGSVMTAAFGENSIRSK 317

Query:   296 VENDSDGSTGFHLHAADIKSSFSADIFGSVAFTAQHGNFQRLFSDLTRFHARLDFPSGSK 355
              ENDS+G  GF LH   + S F AD  G  + TAQ+GNFQ+ F DLTRFHARLDFP G +
Sbjct:   318 FENDSEGVGGFSLHFPSVNSGFMADALGRASLTAQYGNFQKFFFDLTRFHARLDFPHGLR 377

Query:   356 FLSGATRLAQDYFNSQRPSLETVQAVCPKVFFSVQQQIAGPFSFRVDSGVVIDLKN--RD 413
             FL+GAT +AQD  NS++PSLE  Q +CP+V  S+QQQI GPFSF+V+SG+ IDL+N    
Sbjct:   378 FLTGATSVAQDLLNSRQPSLEAFQKICPEVLVSLQQQIVGPFSFKVESGIEIDLRNGANP 437

Query:   414 ICAHDSVFAIEYALQVLGSAKAVAWYAPKHQEFMIELRFFES 455
             +    +VFAIEYALQVL SAKAV  Y+PK  EFM+ELRFFE+
Sbjct:   438 VTVDKTVFAIEYALQVLLSAKAVVSYSPKQNEFMVELRFFET 479


GO:0005634 "nucleus" evidence=ISM
GO:0009507 "chloroplast" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0034196 "acylglycerol transport" evidence=IMP
GO:1990052 "ER to chloroplast lipid transport" evidence=IMP
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009707 "chloroplast outer membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0006869 "lipid transport" evidence=RCA
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
GO:0010351 "lithium ion transport" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
GO:0009536 "plastid" evidence=IDA
GO:0042803 "protein homodimerization activity" evidence=IDA
GO:0070300 "phosphatidic acid binding" evidence=IDA
TAIR|locus:2042361 AT2G44640 "AT2G44640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pm.C_LG_X0017
hypothetical protein (467 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 455
PF12600451 DUF3769: Protein of unknown function (DUF3769); In 100.0
>PF12600 DUF3769: Protein of unknown function (DUF3769); InterPro: IPR022244 This family of proteins is found in bacteria and eukaryotes Back     alignment and domain information
Probab=100.00  E-value=2.7e-74  Score=596.61  Aligned_cols=351  Identities=23%  Similarity=0.307  Sum_probs=299.6

Q ss_pred             ccccchhhhhhcccCCCCc-----------------cCcCCC---ceEEeeeccccc-CCceEEEEeeceehhhhhhhcc
Q 012850           45 LSRPKQIDFMQRFMATPFL-----------------PSFSAG---TLQLQRVLPFQF-SGDWFATLLGQFNVLKFVSSLK  103 (455)
Q Consensus        45 l~R~qQl~~~qrf~~~P~~-----------------PSf~~~---Gl~lqr~~~~~~-~~nw~~tlt~Qf~~Qk~is~~~  103 (455)
                      .++-.+|.|.|++ ++|+.                 ..||..   ||+|+|.|..+. ++|||++|||||++||+|....
T Consensus        59 ~~~~~rLv~dq~~-~iP~~~~~~~~d~~~~~~~~~~~G~D~~Dr~Glfi~R~~~~i~~~~~~~l~ltPQfliQRAi~g~t  137 (451)
T PF12600_consen   59 KSSRNRLVFDQRL-SIPIPRRRLIIDRREREPNRWSFGYDNDDRDGLFIGRNFNPINLTPNWWLTLTPQFLIQRAINGET  137 (451)
T ss_pred             EEccceEEEeccc-ccceecceeecccccccCCceEEeeccCcCCeEEEeccccccccCCcEEEEEeehhheehhhcccc
Confidence            3455678888887 45541                 336643   999999999998 9999999999999999998844


Q ss_pred             ccccccccc-CccCCCCcccccceeeeeeccCCceEEE-----EeeecCCCccccceEEEEeecC-----CceEEEEeec
Q 012850          104 QGELSKSRC-LHALRDKSLYALGFCSELLFTDDDTLLL-----SYDSYGHNNTSRKKAVFCHKFP-----NHNFTLEALW  172 (455)
Q Consensus       104 ~~~~~~~~~-~~~l~D~SlyalG~~s~~~l~~~ttL~~-----sle~~~~~~~~R~k~~l~hklp-----~H~Lt~Eas~  172 (455)
                      ....+...+ +..+  +++|+|+.+.+.+++|++++.+     |++.+++++..|.|..++|++.     .|++++||+|
T Consensus       138 ~s~~~~~~~~~~~l--~dlFGL~a~l~~~l~~~~~l~~~a~lsSfd~~~~~~~~R~~~~l~~~i~~~~~~~~~l~l~~~Y  215 (451)
T PF12600_consen  138 NSYVNPGVKQDNNL--PDLFGLKARLNGNLGPNTSLEGSAELSSFDPDNFENGLRSSSRLRQKIGLPLNNPHDLNLEYAY  215 (451)
T ss_pred             ccccCCCccccCch--hhheeEEEEEecccCCceEEEeeeEecccCcchhhhhhccchhhhcccCCccCCCceEEEEEee
Confidence            444333322 4444  7899777777778999999976     6788889999999999999998     8999999999


Q ss_pred             CceeecCCCCeEEeccceeEEEeccC----CCCCc--eEEEeeeecCCCCcccCCCCCCCCCCCCCCCCceeeeEEeeee
Q 012850          173 PGLFVDKCGNYWDVPFSMAADLASVA----SDSGP--SYHLTMHHNSGLPTQFEGDENSSAVPASLLPGFSLKNAVAYKK  246 (455)
Q Consensus       173 rerf~d~~~gy~dVp~S~~~~laS~~----~~sGl--sY~~g~~~~~g~p~~~~~~~~t~r~P~~LLPg~~~qaa~S~~k  246 (455)
                      |||++||++|||||++|+|+.|.|++    +++|+  +||+++|+++++.+.++.   +.+     .+..|+|+++||++
T Consensus       216 R~R~~NGsLG~q~V~ss~G~~l~s~~~~~~~~~gl~~~Y~~~~~~~n~~td~~~~---~~~-----~~l~R~q~~~Sl~~  287 (451)
T PF12600_consen  216 RERLWNGSLGFQDVYSSYGGVLESPGIWPLGNGGLNLSYQWSVQLGNAQTDRFRS---NNL-----VPLWRAQAAASLNK  287 (451)
T ss_pred             eeeeecCCcCcEEEehhcceEEeccceecccCCCeeEEEEEEeeeeccccccCCC---CCc-----CccceEEEEEEccc
Confidence            99999999999999999999999988    46776  999999999886555433   333     46679999999999


Q ss_pred             ceeeccccccc--cccCCCceeeccCceeeEeeeeeeeEEEEecCCcccCCcCCCCCCCCcccccccccccccccceeEe
Q 012850          247 NVDIWRSKAQK--LKMVQPYDIFLSSPHVSASGIIGAAMTASIGDNSVRSPVENDSDGSTGFHLHAADIKSSFSADIFGS  324 (455)
Q Consensus       247 ~~~LWrg~~~~--~~~~~~Y~~~p~~P~v~~sGiiG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adlfgS  324 (455)
                      +++||++|++|  +++.+||++.|++|||++.+.+.++ .++|+|++.                         +++++||
T Consensus       288 ~~~LW~gk~lp~t~~~~lrYsp~PivP~l~l~t~l~~~-~s~Y~nGd~-------------------------Q~~l~~s  341 (451)
T PF12600_consen  288 SFPLWRGKPLPPTPEEGLRYSPRPIVPGLSLNTGLTGV-YSFYSNGDS-------------------------QNSLFGS  341 (451)
T ss_pred             cceeecCCCCCCCCCcCCCCCcccccCcEEEEeccccc-cccccCCCc-------------------------ceeeEEe
Confidence            99999999998  5779999999999999999988887 566666644                         3579999


Q ss_pred             EEEEEEecccccccccceeeeeeeecCCCCccccccchhhhhhhccCCCCchhhhccCCeEEEEEeeeEeeceEEEEeee
Q 012850          325 VAFTAQHGNFQRLFSDLTRFHARLDFPSGSKFLSGATRLAQDYFNSQRPSLETVQAVCPKVFFSVQQQIAGPFSFRVDSG  404 (455)
Q Consensus       325 v~~taQ~G~FsR~flDyTrf~~rld~~s~s~fL~gas~la~~~~~~~~~~~~~~~~~~p~l~l~lqQQI~GP~rfrv~s~  404 (455)
                      +|+++|+|||+|+|||||+|+++|+++    ++.|+||    |.+++.+|..       +|+++|+|||||||+|+||++
T Consensus       342 ~g~~~q~G~Fsr~~~DyT~~~~~~~~~----~~~g~Sp----f~fD~~~d~~-------~l~~~~~QQi~GP~~~~~~~~  406 (451)
T PF12600_consen  342 VGPTGQLGNFSRPFLDYTRFSIRYSQT----LKSGASP----FLFDRIVDLP-------TLSLGLTQQIYGPLRFGVQSS  406 (451)
T ss_pred             eeeEEEEccccccccccceEeeeecce----eccCCCc----cccccccccc-------eEEEEEEEEeeCCEEEeeeeE
Confidence            999999999999999999999999755    5889999    6677777777       999999999999999999999


Q ss_pred             EEeecCCCceeecccEEEEEeehhhcCcceEEEEeccccccceEEEEeec
Q 012850          405 VVIDLKNRDICAHDSVFAIEYALQVLGSAKAVAWYAPKHQEFMIELRFFE  454 (455)
Q Consensus       405 ~sid~~~~~i~~~d~vy~leyslrtlgSak~vawYnP~rqegmveLRife  454 (455)
                      ++||+  |+  +.|+.|.|||+||+|+   +++||||++|+||++|||+|
T Consensus       407 ~nld~--g~--~i~t~~~L~~sRRsY~---i~~~YnP~~~~Ggi~fRl~d  449 (451)
T PF12600_consen  407 INLDS--GE--EINTDYSLEYSRRSYG---IGLRYNPVRQIGGISFRLND  449 (451)
T ss_pred             EEcCC--Cc--EeeeeEEEEEEeeecc---EEEEECcccccccEEEEecc
Confidence            99997  77  3345599999999997   99999999999999999986



Proteins in this family are typically between 560 and 931 amino acids in length.


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00