Citrus Sinensis ID: 012925

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
Protein Sequence
MPTAATAWLPLFTPSISTITKNNSIPKTSRKLSNSNSVTCCKASLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEHNPGSYRNVPSRLIVERSDLAALEYLMAKQPRGTVRVGAGNTAGARVSNIFVDVKKFQTQYEDAMKKAAGKDTDTNWEARLSAIQAIRSISNWLYWQLPNAESYQNLTRSKQKLKEPNIKKLLDAAAARKQASQSTKSVPSNCMHHDEYWSPSTHALPDTTQSNRSFKAASESPYNKEWKKANDRNYSVREENRRSPIALGIPIVTAAIAAAMVRMQVDQGVSDGLKEHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIGNRQE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHcHHcccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccEEEEEEccccccccccEEEEcEEEEEcccccccEEEEcccccccccccccccccccccccEEEEEEEcccHHHHHcccccccccccHHHHHcccEEEEEccccEEEEEcccccccccEEEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHEEEEEccccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEcccccccccccHHcccHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccEEEEEcEEEEccHHHHHHccccEEEEcccccEEEEEccccHHHHHHHHHccccccEEcHHHHHHHHHHHHccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccEEEccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHccccHcccccccccccccccccccccccccccccccccccHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mptaatawlplftpsistitknnsipktsrklsnsnsvtcckaslnmdfdlydllgidsssdqSQIKTAYRMLQkrchpdiagsagHDMAIILNEAYsvlsdpnsrlaydkeqaktaglrgytgkpiysvwfgseseqrAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAqwadpehnpgsyrnvpsrliVERSDLAALEYLMakqprgtvrvgagntagarvSNIFVDVKKFQTQYEDAMKKAAGKDTDTNWEARLSAIQAIRSISNWLYwqlpnaesyQNLTRSKQKLKEPNIKKLLDAAAARKQAsqstksvpsncmhhdeywspsthalpdttqsnrsfkaasespynkewkkandrnysvreenrrspialgiPIVTAAIAAAMVRMQVDQGvsdglkehvGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIGNRQE
Flexible Loop (DISEMBL)
mptaatawlplftpsistitknnsipktsrklsnsnSVTCCKASLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQaktaglrgytgKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQwadpehnpgsyrnvpsrLIVERSDLAALEYLMAKQPRGTVRVGAgntagarvsnifVDVKKFQTQYEDAMKkaagkdtdtNWEARLSAIQAIRSISNWLYWQLPNAESYQNLTRSKQKLKEPNIKKLLDAAAARKQasqstksvpsncMHHDEYWSPSTHALPDTTQSNRSFKaasespynkewkkandrnysvreenrrspialgIPIVTAAIAAAMVRMQVDQGVSDGLKEHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIGNRQE
Low Complexity Region (SEG)
MPTAATAWLPLFTPSISTITKNNSIPKTSRKLSNSNSVTCCKASLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEHNPGSYRNVPSRLIVERSDLAALEYLMAKQPRGTVRVGAGNTAGARVSNIFVDVKKFQTQYEDAMKKAAGKDTDTNWEARLSAIQAIRSISNWLYWQLPNAESYQNLTRSKQKLKEPNIKKLLDAAAARKQASQSTKSVPSNCMHHDEYWSPSTHALPDTTQSNRSFKAASESPYNKEWKKANDRNYSVREENRRSPIALGIPIVTAAIAAAMVRMQVDQGVSDGLKEHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIGNRQE
Disordered region (IsUnstruct)
******AWLPLFTPSIST*******************VTCCKASLNMDFDLYDLLGID*******IKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEHN*GSYRNVPSRLIVERSDLAALEYLMAKQPRGTVRVGAGNTAGARVSNIFVDVKKFQTQYEDAMK****KDTDTNWEARLSAIQAIRSISNWLYWQLPNA************************************************************************************************IALGIPIVTAAIAAAMVRMQVDQGVSDGLKEHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIG****
Disordered Region (DISOPRED)
*********************************************NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKE*AK***************WFGSESEQRAVFVDEVKCVGC******************************H*PGSYRNVPSRLI************************************FVDVKKFQTQYEDAMKKAAGKDTDTNWEARLSAIQAIRSISNWLYWQLP***************************************************************************************************ALGIPIVTAAIAAAMVR***************GGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIGNR**
Disordered Region (DISEMBL)
MPTAATAWLPLFTPSISTITKNNSI***********SVTCCKASLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEHNPGSYRNVPSRLIVERSDLAALEYLMAKQPRGTVRVGAGNTAGARVSNIFVDVKKFQTQYEDAMKKAAGKDTDTNWEARLSAIQAIRSISNWLYWQLPNAESYQNLTRSKQKLKEPNIKKLLDA****************NCMHHDEYWSPSTHALPDTT*****************WKKANDRNYSVREENRRSPIALGIPIVTAAIAAAMVRMQVDQGVSDGLKEHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIGNRQE
Disordered Region (DISPRO)
**************************KTSR*L*************NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEHNPGSYRNVPSRLIVERSDLAALEYLMAKQPRGTVRVGAGNTAGARVSNIFVDVKKFQTQYEDAMKKAAG**T*TNW******IQAIRSISNWLYWQLPN*************LKEPNIKKLLDAAAARKQASQS*******CMHHDEYWSPST****************************************RSPIALGIPIVTAAIAAAMVRMQVDQGVSDGLKEHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIGN***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPTAATAWLPLFTPSISTITKNNSIPKTSRKLSNSNSVTCCKASLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEHNPGSYRNVPSRLIVERSDLAALEYLMAKQPRGTVRVGAGNTAGARVSNIFVDVKKFQTQYEDAMKKAAGKDTDTNWEARLSAIQAIRSISNWLYWQLPNAESYQNLTRSKQKLKEPNIKKLLDAAAARKQASQSTKSVPSNCMHHDEYWSPSTHALPDTTQSNRSFKAASESPYNKEWKKANDRNYSVREENRRSPIALGIPIVTAAIAAAMVRMQVDQGVSDGLKEHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIGNRQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	453	2.2.26 [Sep-21-2011]
Q5HNW7	373	Chaperone protein DnaJ OS	yes	no	0.198	0.241	0.366	8e-09
Q8RB67	384	Chaperone protein DnaJ OS	yes	no	0.136	0.161	0.437	1e-08
Q8CP18	373	Chaperone protein DnaJ OS	yes	no	0.198	0.241	0.366	2e-08
Q98PI9	377	Chaperone protein DnaJ OS	yes	no	0.174	0.209	0.397	2e-08
P47442	601	DnaJ-like protein MG200 O	yes	no	0.161	0.121	0.421	4e-08
Q0AKB3	395	Chaperone protein DnaJ OS	yes	no	0.136	0.156	0.453	4e-08
B8HLD2	374	Chaperone protein DnaJ OS	yes	no	0.143	0.173	0.424	5e-08
Q2YT48	379	Chaperone protein DnaJ OS	yes	no	0.136	0.163	0.460	5e-08
P63972	379	Chaperone protein DnaJ OS	yes	no	0.136	0.163	0.460	5e-08
A8Z4B8	379	Chaperone protein DnaJ OS	yes	no	0.136	0.163	0.460	5e-08

>sp|Q5HNW7|DNAJ_STAEQ Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=dnaJ PE=3 SV=1

 Score = 62.4 bits (150), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 11/101 (10%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
           D Y++LG++ S+ + +IK AYR L K+ HPDI    G D     ++EAY VLSD N R+ 
Sbjct: 5   DYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRVN 64

Query: 109 YDK----------EQAKTAGLRGYTGKPIYSVWFGSESEQR 139
           YD+                G      + I+S +FG  S QR
Sbjct: 65  YDQFGHDGPQGGFGSQGFGGSDFGGFEDIFSSFFGGGSRQR 105

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279)

>sp|Q8RB67|DNAJ_THETN Chaperone protein DnaJ OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=dnaJ PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI--AGSAGHDMAIILNEAYSVLSDPNSRL 107
           DLY++LG+D ++ Q +IK AYR L K+ HPD+             +NEAY +LSDP  R 
Sbjct: 5   DLYEILGVDRNASQEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 64

Query: 108 AYDK 111
            YD+
Sbjct: 65  QYDQ 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

>sp|Q8CP18|DNAJ_STAES Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC 12228) GN=dnaJ PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
           D Y++LG++ S+ + +IK AYR L K+ HPDI    G D     ++EAY VLSD N R  
Sbjct: 5   DYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRAN 64

Query: 109 YDK----------EQAKTAGLRGYTGKPIYSVWFGSESEQR 139
           YD+                G      + I+S +FG  S QR
Sbjct: 65  YDQFGHDGPQGGFGSQGFGGSDFGGFEDIFSSFFGGGSRQR 105

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280)

>sp|Q98PI9|DNAJ_MYCPU Chaperone protein DnaJ OS=Mycoplasma pulmonis (strain UAB CTIP) GN=dnaJ PE=3 SV=2

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 45  LNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDP 103
           +N   D Y +LGID S+++ +IK AYR L    HPD + S   +  +  +NEAY VLS+P
Sbjct: 1   MNKKEDYYKILGIDKSANEKEIKKAYRKLAMEHHPDRSSSKESEAKMREINEAYEVLSNP 60

Query: 104 NSRLAYDK---EQAKTAGLRGYT 123
             +  YDK   E A   G  G+ 
Sbjct: 61  EKKAIYDKYGHEAANNPGFNGFN 83

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Mycoplasma pulmonis (strain UAB CTIP) (taxid: 272635)

>sp|P47442|DNAJM_MYCGE DnaJ-like protein MG200 OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG200 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 10/83 (12%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII---LNEAYSVLSDPNSR 106
           D Y++LGI   +DQS+IK A+R L K+ HPD   +   D A I   +NEA  VLS+P  R
Sbjct: 7   DYYEVLGITPDADQSEIKKAFRKLAKKYHPDRNNAP--DAAKIFAEINEANDVLSNPKKR 64

Query: 107 LAYDKEQAKTAGLRGYTGKPIYS 129
             YDK      G  G  G+P ++
Sbjct: 65  ANYDK-----YGFDGVDGEPAFN 82

Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)

>sp|Q0AKB3|DNAJ_MARMM Chaperone protein DnaJ OS=Maricaulis maris (strain MCS10) GN=dnaJ PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI-AGSAGHDMAI-ILNEAYSVLSDPNSRL 107
           D Y++LG+D ++D+  +K+AYR    + HPD   G A  +    ++ EAYSVLSDPN R 
Sbjct: 5   DFYEVLGVDKTADEKTLKSAYRKQAMKYHPDRNPGDAEAEAQFKVVGEAYSVLSDPNKRA 64

Query: 108 AYDK 111
           AYD+
Sbjct: 65  AYDR 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Maricaulis maris (strain MCS10) (taxid: 394221)

>sp|B8HLD2|DNAJ_CYAP4 Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dnaJ PE=3 SV=1

 Score = 59.7 bits (143), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 47  MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNS 105
           M  D YD+LG+   + Q  +K AYR L ++ HPD+   AG +     +N AY VLSDP +
Sbjct: 1   MARDYYDILGVSRDAGQEDLKQAYRRLARKYHPDVNKEAGAEERFKEINRAYEVLSDPET 60

Query: 106 RLAYDK 111
           R  YD+
Sbjct: 61  RARYDR 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

>sp|Q2YT48|DNAJ_STAAB Chaperone protein DnaJ OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=dnaJ PE=3 SV=1

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
           D Y++LGI   + + +IK AYR L K+ HPDI    G D     ++EAY VLSD N R +
Sbjct: 5   DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64

Query: 109 YDK 111
           YD+
Sbjct: 65  YDQ 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036)

>sp|P63972|DNAJ_STAAW Chaperone protein DnaJ OS=Staphylococcus aureus (strain MW2) GN=dnaJ PE=3 SV=1

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
           D Y++LGI   + + +IK AYR L K+ HPDI    G D     ++EAY VLSD N R +
Sbjct: 5   DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64

Query: 109 YDK 111
           YD+
Sbjct: 65  YDQ 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus aureus (strain MW2) (taxid: 196620)

>sp|A8Z4B8|DNAJ_STAAT Chaperone protein DnaJ OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=dnaJ PE=3 SV=1

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
           D Y++LGI   + + +IK AYR L K+ HPDI    G D     ++EAY VLSD N R +
Sbjct: 5   DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64

Query: 109 YDK 111
           YD+
Sbjct: 65  YDQ 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus aureus (strain USA300 / TCH1516) (taxid: 451516)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
296085315	498	unnamed protein product [Vitis vinifera]	0.988	0.899	0.606	1e-150
225465672	482	PREDICTED: uncharacterized protein LOC10	0.988	0.929	0.606	1e-150
224096536	461	predicted protein [Populus trichocarpa]	0.964	0.947	0.612	1e-140
356532237	464	PREDICTED: uncharacterized protein LOC10	0.969	0.946	0.565	1e-137
356576963	490	PREDICTED: uncharacterized protein LOC10	0.977	0.904	0.568	1e-137
356519596	488	PREDICTED: uncharacterized protein LOC10	0.935	0.868	0.588	1e-137
357438881	459	Chaperone protein dnaJ [Medicago truncat	0.991	0.978	0.557	1e-134
449516463	460	PREDICTED: uncharacterized protein LOC10	0.971	0.956	0.557	1e-132
449451737	460	PREDICTED: uncharacterized protein LOC10	0.971	0.956	0.557	1e-132
147837842	434	hypothetical protein VITISV_018825 [Viti	0.865	0.903	0.604	1e-129

>gi|296085315|emb|CBI29047.3| unnamed protein product [Vitis vinifera]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 295/486 (60%), Positives = 350/486 (72%), Gaps = 38/486 (7%)

Query: 1   MPTAATAWLPLFTPSISTITKNNSIPK----------TSRKLSNSNSVTC--------CK 42
           MP+     LPL+TP+ S IT+  S P+          T RKL  +NS+TC          
Sbjct: 1   MPSTC---LPLYTPTSSIITRI-STPRSAGLTFHHATTLRKLHGNNSITCKASSSSSSSS 56

Query: 43  ASLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSD 102
            S  +DFDLYDLLGI+SSSDQ QIK AYR LQKRCHPDIAG AGHDMAIILNE YSVLSD
Sbjct: 57  LSSLVDFDLYDLLGIESSSDQWQIKMAYRKLQKRCHPDIAGPAGHDMAIILNEVYSVLSD 116

Query: 103 PNSRLAYDKEQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTF 162
           PN RLAYDKEQAK A LRGYTGKP+YSVW+GSESE+RAVFVDEVKCVGCLKCALFA KTF
Sbjct: 117 PNLRLAYDKEQAKIARLRGYTGKPLYSVWYGSESEERAVFVDEVKCVGCLKCALFAEKTF 176

Query: 163 AIESAYGRARVVAQWADPEHN-PGSYRNVPSRLI--VERSDLAALEYLMAKQPRGTVRVG 219
           AIES YGRARVVAQWADPE+    +    P   I  VERS+LAALE+LM+KQPRG+VR+ 
Sbjct: 177 AIESVYGRARVVAQWADPEYKIQQAIDACPVDCISMVERSNLAALEFLMSKQPRGSVRMS 236

Query: 220 AGNTAGARVSNIFVDVKKFQTQYEDAMKKAA---GKDTDTNWEARLSAIQAIRSISNWLY 276
           AGN  GA VSNIFVDVKKFQT++ DAM KA+    K+ D   EAR+SAIQ IRSI+NWLY
Sbjct: 237 AGNAVGACVSNIFVDVKKFQTRFHDAMDKASTHGSKEKDDQREARISAIQTIRSITNWLY 296

Query: 277 WQLPN--AESYQNLTRSKQKLKEPNIKKLLDAAAARKQASQST----KSVPSNCMHHDEY 330
           WQ P   ++S Q+LTR   +L  PN  KL DAAAARKQA +ST    +++PS  ++  EY
Sbjct: 297 WQAPTGGSDSGQSLTRVAGRLSGPNFNKLRDAAAARKQARESTEPRSRTMPSY-IYDAEY 355

Query: 331 WSPSTHALPDTTQSN---RSFKAASESPYNKEWKKANDRNYSVREENRRSPIALGIPIVT 387
           W PST ALP T Q+N       ++  SP +K+WK  + +++ V + NRRS     IP+ T
Sbjct: 356 WVPSTLALPATNQNNDLASKAASSESSPPSKQWKGKSKKDHGVSKNNRRSSTIWQIPLAT 415

Query: 388 AAIAAAMVRMQVDQGVSDGLKEHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEV 447
           A IAA +VR Q+ +G    LKEH+GGSLAL IVNSSWLQV+LAG+TWY IG  +VEL+EV
Sbjct: 416 ATIAAVVVRFQLGEGAVGELKEHIGGSLALYIVNSSWLQVVLAGVTWYLIGTYMVELLEV 475

Query: 448 IGNRQE 453
           I NR +
Sbjct: 476 IRNRDK 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465672|ref|XP_002272283.1| PREDICTED: uncharacterized protein LOC100247733 [Vitis vinifera]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 295/486 (60%), Positives = 350/486 (72%), Gaps = 38/486 (7%)

Query: 1   MPTAATAWLPLFTPSISTITKNNSIPK----------TSRKLSNSNSVTC--------CK 42
           MP+     LPL+TP+ S IT+  S P+          T RKL  +NS+TC          
Sbjct: 1   MPSTC---LPLYTPTSSIITRI-STPRSAGLTFHHATTLRKLHGNNSITCKASSSSSSSS 56

Query: 43  ASLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSD 102
            S  +DFDLYDLLGI+SSSDQ QIK AYR LQKRCHPDIAG AGHDMAIILNE YSVLSD
Sbjct: 57  LSSLVDFDLYDLLGIESSSDQWQIKMAYRKLQKRCHPDIAGPAGHDMAIILNEVYSVLSD 116

Query: 103 PNSRLAYDKEQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTF 162
           PN RLAYDKEQAK A LRGYTGKP+YSVW+GSESE+RAVFVDEVKCVGCLKCALFA KTF
Sbjct: 117 PNLRLAYDKEQAKIARLRGYTGKPLYSVWYGSESEERAVFVDEVKCVGCLKCALFAEKTF 176

Query: 163 AIESAYGRARVVAQWADPEHN-PGSYRNVPSRLI--VERSDLAALEYLMAKQPRGTVRVG 219
           AIES YGRARVVAQWADPE+    +    P   I  VERS+LAALE+LM+KQPRG+VR+ 
Sbjct: 177 AIESVYGRARVVAQWADPEYKIQQAIDACPVDCISMVERSNLAALEFLMSKQPRGSVRMS 236

Query: 220 AGNTAGARVSNIFVDVKKFQTQYEDAMKKAA---GKDTDTNWEARLSAIQAIRSISNWLY 276
           AGN  GA VSNIFVDVKKFQT++ DAM KA+    K+ D   EAR+SAIQ IRSI+NWLY
Sbjct: 237 AGNAVGACVSNIFVDVKKFQTRFHDAMDKASTHGSKEKDDQREARISAIQTIRSITNWLY 296

Query: 277 WQLPN--AESYQNLTRSKQKLKEPNIKKLLDAAAARKQASQST----KSVPSNCMHHDEY 330
           WQ P   ++S Q+LTR   +L  PN  KL DAAAARKQA +ST    +++PS  ++  EY
Sbjct: 297 WQAPTGGSDSGQSLTRVAGRLSGPNFNKLRDAAAARKQARESTEPRSRTMPSY-IYDAEY 355

Query: 331 WSPSTHALPDTTQSN---RSFKAASESPYNKEWKKANDRNYSVREENRRSPIALGIPIVT 387
           W PST ALP T Q+N       ++  SP +K+WK  + +++ V + NRRS     IP+ T
Sbjct: 356 WVPSTLALPATNQNNDLASKAASSESSPPSKQWKGKSKKDHGVSKNNRRSSTIWQIPLAT 415

Query: 388 AAIAAAMVRMQVDQGVSDGLKEHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEV 447
           A IAA +VR Q+ +G    LKEH+GGSLAL IVNSSWLQV+LAG+TWY IG  +VEL+EV
Sbjct: 416 ATIAAVVVRFQLGEGAVGELKEHIGGSLALYIVNSSWLQVVLAGVTWYLIGTYMVELLEV 475

Query: 448 IGNRQE 453
           I NR +
Sbjct: 476 IRNRDK 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096536|ref|XP_002310648.1| predicted protein [Populus trichocarpa] gi|222853551|gb|EEE91098.1| predicted protein [Populus trichocarpa]

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 284/464 (61%), Positives = 331/464 (71%), Gaps = 27/464 (5%)

Query: 12  FTPSISTITKNNSIPKTSRKLSNSNSVTCCKASLN---------MDFDLYDLLGIDSSSD 62
            T  I T     S P TS + + + S+TC   S +          DFDLYDLLGIDSSSD
Sbjct: 1   MTTRILTPKTFTSFPPTSSRKTCNYSLTCRATSSSSSSSSYSSITDFDLYDLLGIDSSSD 60

Query: 63  QSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGY 122
            SQIKTAYR LQKRCHPDIAG AGHDMAIILNEAYS+LSDPNSRLAYDKEQAK A LRGY
Sbjct: 61  HSQIKTAYRTLQKRCHPDIAGPAGHDMAIILNEAYSLLSDPNSRLAYDKEQAKMAELRGY 120

Query: 123 TGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEH 182
           +GKPIYSVWFGSESEQRAVFVDEVKCVGCLKCAL A KTFAIES YGRARVVAQWADPEH
Sbjct: 121 SGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALIAEKTFAIESLYGRARVVAQWADPEH 180

Query: 183 N-PGSYRNVPSRLI--VERSDLAALEYLMAKQPRGTVRVGAGNTAGARVSNIFVDVKKFQ 239
               +    P   I  VERSDLAALE+LM+KQPRG+VRVG GNTAG RVSNIF+DVKKFQ
Sbjct: 181 KIQAAIDACPVDCISTVERSDLAALEFLMSKQPRGSVRVGGGNTAGGRVSNIFIDVKKFQ 240

Query: 240 TQYEDAMKKAAGK---DTDTNWEARLSAIQAIRSISNWLYWQLPNA-----ESYQNLTRS 291
            ++ DAM KA  +   ++D   EAR+SA QAIRSISNWLYWQ P       ES Q L R 
Sbjct: 241 NRFVDAMNKANPQNSMESDLQREARISAFQAIRSISNWLYWQSPKGRADSPESCQKLARI 300

Query: 292 KQKLKEPNIKKLLDAAAARKQASQST---KSVPSNCMHHDEYWSPSTHALPDTTQSNRSF 348
            +K  +PNI K+ +AAAARK+A ++T   +  PS+ +++DEYW+PST  LP +  S+ S 
Sbjct: 301 VRKSPQPNINKIREAAAARKKARENTRPFRQTPSSSLYYDEYWTPSTQFLPASVNSSSS- 359

Query: 349 KAASESPYNKEWKKANDRNYSVREENRRS-PIALGIPIVTAAIAAAMVRMQVDQGVSDGL 407
            A  E+ + KE KK    N    EE R++ PI   IP+V A IAA ++ +QV +G    L
Sbjct: 360 SATPETSHAKEPKKLEKDNRG--EEKRQTNPIRWEIPMVPAIIAAVIIHLQVGEGTVGRL 417

Query: 408 KEHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIGNR 451
            EHVGGS AL IVNSSWLQV LAGITWY IG +++ ++E I  R
Sbjct: 418 NEHVGGSFALEIVNSSWLQVTLAGITWYLIGLSIIGVVEAIRKR 461

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532237|ref|XP_003534680.1| PREDICTED: uncharacterized protein LOC100783616 [Glycine max]

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/474 (56%), Positives = 330/474 (69%), Gaps = 35/474 (7%)

Query: 1   MPTAATAWLPL--------FTPSISTITKNNSIPKTSRKLSNSNSVTCCKASLN---MDF 49
           M T A+A LP         F PS       N   K   K + S S   CKAS +   +DF
Sbjct: 1   MATVASACLPSYIIKKPLGFHPS-------NLHNKCFSKSNASTSTLSCKASSSSSMVDF 53

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAY 109
           DLYDLLGID+S DQSQ+K AYR LQKRCHPDIAG AGHDMAIILN+AY++LSDPN+RLAY
Sbjct: 54  DLYDLLGIDNSCDQSQVKVAYRSLQKRCHPDIAGPAGHDMAIILNDAYAILSDPNARLAY 113

Query: 110 DKEQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESAYG 169
           DKEQAK++  +G+TG+PIYSVW GSESEQRA+FVDE+KCVGCLKCAL A KTFA+ES YG
Sbjct: 114 DKEQAKSSEFKGFTGRPIYSVWCGSESEQRAIFVDEIKCVGCLKCALLAEKTFAVESVYG 173

Query: 170 RARVVAQWAD-PEHNPGSYRNVPSRLI--VERSDLAALEYLMAKQPRGTVRVGAGNTAGA 226
           RARVVAQWAD P     +  + P   I  VERS+LAALE+LM+KQPRG VRVGAG+TAGA
Sbjct: 174 RARVVAQWADSPNKIDEAIESCPVNCISVVERSNLAALEFLMSKQPRGNVRVGAGHTAGA 233

Query: 227 RVSNIFVDVKKFQTQYEDAMKKA--AGKDTDTNWEARLSAIQAIRSISNWLYWQLPNAES 284
           RVSNIFVDV+KFQT++++AM+KA    K+TD   E+R+SAIQAIRSISNWLYWQ P   S
Sbjct: 234 RVSNIFVDVEKFQTRFQEAMEKANKCSKETDLQRESRMSAIQAIRSISNWLYWQTPRTSS 293

Query: 285 Y-----QNLTRSKQKLKEPNIKKLLDAAAARK--QASQSTKSVPSNCMHHDEYWSPSTHA 337
                 + +TR   KL EP+I KL DA A +K    +++ +  P NC+H +EYW+PSTHA
Sbjct: 294 SSSKSEKGMTRVVYKLPEPDISKLRDAVARKKVRDRTRTKRQTPLNCIHPEEYWTPSTHA 353

Query: 338 LPDTTQSNRSFKAASESPYNKEWKKANDRNYSVREENRRSPIALGIPIVTAAIAAAMVRM 397
           LP +T+S  +     +       +K  +  Y    EN+ SPI  G+P+VTA  A   V++
Sbjct: 354 LPSSTRSTTTPTPLEKPSVTTTGQKKTNETY----ENQNSPIRWGLPMVTALTAVVTVQI 409

Query: 398 QVDQGVSDGLKEHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIGNR 451
              +   + L++HV GSLAL IVNSSWLQ  LA  TWY IG A+ EL+ +IGNR
Sbjct: 410 HAVESTRE-LQQHVAGSLALQIVNSSWLQCTLAAATWYMIGMAITELVAIIGNR 462

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576963|ref|XP_003556599.1| PREDICTED: uncharacterized protein LOC100785995 [Glycine max]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/475 (56%), Positives = 328/475 (69%), Gaps = 32/475 (6%)

Query: 1   MPTAATAWLPL--------FTPSISTITKNNSIPKTSRKLSNSNSVTCCKASLN----MD 48
           M T A+A LP         F PS       N   K   K + S S   CKAS +    MD
Sbjct: 22  MATIASARLPSYIIKKPLGFHPS-------NLHNKCFSKSNASTSTLTCKASSSSSTMMD 74

Query: 49  FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLA 108
           FDLYDLLGIDSS DQSQ+K AYR LQKRCHPDIAG AGHDMAIILNEAYS+LSDPN+RLA
Sbjct: 75  FDLYDLLGIDSSCDQSQVKVAYRSLQKRCHPDIAGPAGHDMAIILNEAYSILSDPNARLA 134

Query: 109 YDKEQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESAY 168
           YDKEQAK++  +G+TG+PIYSVW GSESEQRA+FVDE+KCVGCLKCAL A KTFA+ES Y
Sbjct: 135 YDKEQAKSSEFKGFTGRPIYSVWCGSESEQRAIFVDEIKCVGCLKCALLAEKTFAVESVY 194

Query: 169 GRARVVAQWAD-PEHNPGSYRNVPSRLI--VERSDLAALEYLMAKQPRGTVRVGAGNTAG 225
           GRARVV+QWAD P     +  + P   I  VERS+LAALE+LM+KQPRG VRVGA +TAG
Sbjct: 195 GRARVVSQWADSPNKIDEAIESCPVNCISVVERSNLAALEFLMSKQPRGNVRVGAAHTAG 254

Query: 226 ARVSNIFVDVKKFQTQYEDAMKKA--AGKDTDTNWEARLSAIQAIRSISNWLYWQLPNAE 283
           ARVSNIFVDV+KFQT++++AM+KA    K+TD   E+R+SAIQAIRSISNWLYWQ P + 
Sbjct: 255 ARVSNIFVDVEKFQTRFQEAMEKANKCSKETDLQRESRMSAIQAIRSISNWLYWQTPRSS 314

Query: 284 SY-----QNLTRSKQKLKEPNIKKLLDAAAARK--QASQSTKSVPSNCMHHDEYWSPSTH 336
           S      + +TR   KL EP+I KL DA A +K    +++    P N +H +EYW+PSTH
Sbjct: 315 SSSSKSEKGMTRVVYKLPEPDISKLRDAVARKKVRDRTRTKHQTPLNFIHPEEYWTPSTH 374

Query: 337 ALPDTTQSNRSFKAASESPYNKEWKKANDRNYSVREENRRSPIALGIPIVTAAIAAAMVR 396
           ALP +T+S  +     +       +K  + +     ENR SPI  G+PI+TA  A   V+
Sbjct: 375 ALPSSTRSTTTPTPLEKPSVTTTGQKKTNASDHETYENRNSPIRWGLPIITALTAVVTVQ 434

Query: 397 MQVDQGVSDGLKEHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIGNR 451
           +   +  S  L++HV GSLAL IVNSSWLQ  LA  TWY IG A+ EL+ +IGNR
Sbjct: 435 IHTVESTSK-LQQHVAGSLALQIVNSSWLQCTLAAATWYMIGMAITELLSIIGNR 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519596|ref|XP_003528458.1| PREDICTED: uncharacterized protein LOC100812414 [Glycine max]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/440 (58%), Positives = 316/440 (71%), Gaps = 16/440 (3%)

Query: 27  KTSRKLSNSNSVTCCKA---SLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG 83
           K   K + S S   CKA   S  MDFDLYDLLGIDSS DQSQ+K AYR LQKRCHPDIAG
Sbjct: 48  KCFSKSNASTSTLTCKALSSSTMMDFDLYDLLGIDSSCDQSQVKVAYRSLQKRCHPDIAG 107

Query: 84  SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGYTGKPIYSVWFGSESEQRAVFV 143
            AGHDMAIILNEAYS+LSDPN+RLAYDKEQAK++  +G+TG+PIYSVW GSESEQRA+FV
Sbjct: 108 PAGHDMAIILNEAYSILSDPNARLAYDKEQAKSSEFKGFTGRPIYSVWCGSESEQRAIFV 167

Query: 144 DEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWAD-PEHNPGSYRNVPSRLI--VERSD 200
           DE+KCVGCLKCAL A KTFA+ES YGRARVV+QWAD P     +  + P   I  VERS+
Sbjct: 168 DEIKCVGCLKCALLAEKTFAVESVYGRARVVSQWADSPNKIDEAIESCPVNCISVVERSN 227

Query: 201 LAALEYLMAKQPRGTVRVGAGNTAGARVSNIFVDVKKFQTQYEDAMKKA--AGKDTDTNW 258
           LAALE+LM+KQPRG VRVGA +TAGARVSNIFVDV+KFQT++++AM+KA    K+TD   
Sbjct: 228 LAALEFLMSKQPRGNVRVGAAHTAGARVSNIFVDVEKFQTRFQEAMEKANKCSKETDLQR 287

Query: 259 EARLSAIQAIRSISNWLYWQLPNAESY-----QNLTRSKQKLKEPNIKKLLDAAAARK-- 311
           E+R+SAIQAIRSISNWLYWQ P + S      + +TR   KL EP+I KL DA A +K  
Sbjct: 288 ESRMSAIQAIRSISNWLYWQTPRSSSSSSKSEKGMTRVVNKLPEPDISKLRDAVARKKVR 347

Query: 312 QASQSTKSVPSNCMHHDEYWSPSTHALPDTTQSNRSFKAASESPYNKEWKKANDRNYSVR 371
             +++    P N +H +EYW+PSTHALP +T+S  +     +       +K  + +    
Sbjct: 348 DRTRTKHQTPLNFIHPEEYWTPSTHALPSSTRSTTTPTPLEKPSVTTTGQKKTNESDHET 407

Query: 372 EENRRSPIALGIPIVTAAIAAAMVRMQVDQGVSDGLKEHVGGSLALIIVNSSWLQVMLAG 431
            +N+ SPI  G+PI+TA  A   V+M   +  S  L++HV GSLAL IVNSSWLQ  LA 
Sbjct: 408 YDNQNSPIRWGLPIITALTAVVTVQMHTVESTSK-LQQHVAGSLALQIVNSSWLQCTLAA 466

Query: 432 ITWYFIGAAVVELIEVIGNR 451
            TWY IG A+ EL+ +IGNR
Sbjct: 467 ATWYMIGMAITELLSIIGNR 486

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438881|ref|XP_003589717.1| Chaperone protein dnaJ [Medicago truncatula] gi|355478765|gb|AES59968.1| Chaperone protein dnaJ [Medicago truncatula]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 256/459 (55%), Positives = 317/459 (69%), Gaps = 10/459 (2%)

Query: 1   MPTAATAWLPLFTPSISTITKNNSIPKTSRKLSNSNSVTCCKASLNMDFDLYDLLGIDSS 60
           M T  +  LPLFTP  S     +   K++       + +   ++  +DFDLYDLLGIDSS
Sbjct: 1   MATVTSTSLPLFTPKTSNFHNKSCFSKSNFSTLKCKASSSSFSASMLDFDLYDLLGIDSS 60

Query: 61  SDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLR 120
            DQSQIKTAYR LQKRCHPDIAG +GHDMAIILN+AY++LSDP +R AYDKE AK    +
Sbjct: 61  CDQSQIKTAYRSLQKRCHPDIAGPSGHDMAIILNDAYAILSDPFARFAYDKEHAKITEFK 120

Query: 121 GYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADP 180
           G+TG+P+YSVW GS+SEQRA+FVDEVKCVGCLKCAL A KTFAIES YGRARVV+QWAD 
Sbjct: 121 GFTGRPLYSVWCGSQSEQRAIFVDEVKCVGCLKCALLAEKTFAIESVYGRARVVSQWADS 180

Query: 181 EHN-PGSYRNVPSRLI--VERSDLAALEYLMAKQPRGTVRVGAGNTAGARVSNIFVDVKK 237
           E     + +  P   I  VERS+LAALE+LM+KQPRG VRVGA +TAGARVSNIFVDV++
Sbjct: 181 EPQIDEAIQACPVNCISVVERSNLAALEFLMSKQPRGNVRVGASHTAGARVSNIFVDVER 240

Query: 238 FQTQYEDAMKKAA--GKDTDTNWEARLSAIQAIRSISNWLYWQLPNAESYQNLTRSKQK- 294
           FQT++++ M+KA    ++TD   E+R+SAIQAIRSISNWLYWQ   A   +++T+  QK 
Sbjct: 241 FQTRFQETMQKATKYSQETDLQRESRMSAIQAIRSISNWLYWQPNRASDNKSMTKVAQKL 300

Query: 295 LKEPNIKKLLDAAAARK-QASQSTK-SVPSNCMHHDEYWSPSTHALPDTTQSNRSFKAAS 352
           L +PN+ KL DAAA RK + +Q TK   P N +H +EYW+PST  LP +T +  +     
Sbjct: 301 LPDPNLSKLRDAAAKRKLKDTQKTKHKTPINSIHPEEYWTPSTVVLPSSTSTTAT--PPI 358

Query: 353 ESPYNKEWKKANDRNYSVREENRRSPIALGIPIVTAAIAAAMVRMQVDQGVSDGLKEHVG 412
           E P   + KK   R+     EN  SPI  G+P+VT+    A VR+      +  LKEH G
Sbjct: 359 EKPTFAKGKKQRKRSDVETYENENSPIRWGLPVVTSLFGMAAVRLHEVGSSTVELKEHWG 418

Query: 413 GSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIGNR 451
           GSLAL IVNSSWLQ +L   TWY IG   VE +  IGNR
Sbjct: 419 GSLALEIVNSSWLQYILVAATWYVIGRVAVEFVANIGNR 457

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516463|ref|XP_004165266.1| PREDICTED: uncharacterized protein LOC101229316 [Cucumis sativus]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 258/463 (55%), Positives = 323/463 (69%), Gaps = 23/463 (4%)

Query: 5   ATAWLPLFTPSISTITK---NNSIPKTSRKLSNSNSVTCCKASLNMDFDLYDLLGIDSSS 61
           + +WLPL+TP+     +    +  P TSRKL + N+++C  AS   DFDLYDLLGID++S
Sbjct: 2   SASWLPLYTPTAQYPIQRKLGSYNPSTSRKL-HGNTLSCKAASSITDFDLYDLLGIDNTS 60

Query: 62  DQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRG 121
             S+IK AYR LQK CHPDIAG AGHDMAIILNEAYSVLSDP+SRLAYDKEQAK A LRG
Sbjct: 61  HPSRIKAAYRALQKHCHPDIAGPAGHDMAIILNEAYSVLSDPSSRLAYDKEQAKMAELRG 120

Query: 122 YTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPE 181
           YTGKP+YSVW GSESEQRAVFVDEVKC+GCLKCALFAGKTFA+ES YGRARVVAQWADPE
Sbjct: 121 YTGKPVYSVWLGSESEQRAVFVDEVKCIGCLKCALFAGKTFAVESVYGRARVVAQWADPE 180

Query: 182 HNP-GSYRNVPSRLI--VERSDLAALEYLMAKQPRGTVRVGAGNTAGARVSNIFVDVKKF 238
           +    +    P   I  VER+DLAALE+LM+KQPRG VRVG GNTAG RVSNIF DVKKF
Sbjct: 181 YKVMEAIEACPVDCISMVERTDLAALEFLMSKQPRGNVRVGMGNTAGERVSNIFTDVKKF 240

Query: 239 QTQYEDAMKKAAGKDTDTNWEARLSAIQAIRSISNWLYWQL-----PNAESYQNLTRSKQ 293
           Q ++ +AM+KA  + + +  E +L+AIQAIRSISNWL+WQ      P ++  Q+L RS  
Sbjct: 241 QIKFNEAMEKAMKEQSKS--EGQLAAIQAIRSISNWLFWQTATPVGPGSKQSQSLARSAS 298

Query: 294 KLKEPNIKKLLDAAAARKQASQSTKS---VPSNCMHHDEYWSPSTHALPDTTQS--NRSF 348
           K   P I KL  AA ARKQ  +  +      +  ++ D+YW P+T ALP +TQS  N   
Sbjct: 299 KFT-PEINKLQAAATARKQIREKAEDRNRTKTKYLYRDDYWVPTTFALPASTQSPNNPIS 357

Query: 349 KAASESPYNKEWKKANDRNYSVREENRRSPIALGIPIVTAAIAAAMVRMQVDQGVSDGLK 408
           K + E+   K  K++      V      SP+ L +P+  + IA A+++  V    +  LK
Sbjct: 358 KPSVET---KPTKQSRGLGSDVSRGGHVSPMRLVLPVSISIIATAIIQQMVRNDGASELK 414

Query: 409 EHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIGNR 451
           EH  GS+AL +VNS W+QV+L G+TWY IG AV+ ++E+I  +
Sbjct: 415 EHAAGSMALELVNSHWMQVILTGVTWYIIGMAVMGMLEMIARK 457

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451737|ref|XP_004143617.1| PREDICTED: uncharacterized protein LOC101205271 [Cucumis sativus]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 258/463 (55%), Positives = 323/463 (69%), Gaps = 23/463 (4%)

Query: 5   ATAWLPLFTPSISTITK---NNSIPKTSRKLSNSNSVTCCKASLNMDFDLYDLLGIDSSS 61
           + +WLPL+TP+     +    +  P TSRKL + N+++C  AS   DFDLYDLLGID++S
Sbjct: 2   SASWLPLYTPTAQYPIQRKLGSYNPSTSRKL-HGNTLSCKAASSITDFDLYDLLGIDNTS 60

Query: 62  DQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRG 121
             S+IK AYR LQK CHPDIAG AGHDMAIILNEAYSVLSDP+SRLAYDKEQAK A LRG
Sbjct: 61  HPSRIKAAYRALQKHCHPDIAGPAGHDMAIILNEAYSVLSDPSSRLAYDKEQAKMAELRG 120

Query: 122 YTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPE 181
           YTGKP+YSVW GSESEQRAVFVDEVKC+GCLKCALFAGKTFA+ES YGRARVVAQWADPE
Sbjct: 121 YTGKPVYSVWLGSESEQRAVFVDEVKCIGCLKCALFAGKTFAVESVYGRARVVAQWADPE 180

Query: 182 HNP-GSYRNVPSRLI--VERSDLAALEYLMAKQPRGTVRVGAGNTAGARVSNIFVDVKKF 238
           +    +    P   I  VER+DLAALE+LM+KQPRG VRVG GNTAG RVSNIF DVKKF
Sbjct: 181 YKVMEAIEACPVDCISMVERTDLAALEFLMSKQPRGNVRVGMGNTAGERVSNIFTDVKKF 240

Query: 239 QTQYEDAMKKAAGKDTDTNWEARLSAIQAIRSISNWLYWQL-----PNAESYQNLTRSKQ 293
           Q ++ +AM+KA  + + +  E +L+AIQAIRSISNWL+WQ      P ++  Q+L RS  
Sbjct: 241 QIKFNEAMEKAMKEQSKS--EGQLAAIQAIRSISNWLFWQTATPVGPGSKQSQSLARSAS 298

Query: 294 KLKEPNIKKLLDAAAARKQASQSTKS---VPSNCMHHDEYWSPSTHALPDTTQS--NRSF 348
           K   P I KL  AA ARKQ  +  +      +  ++ D+YW P+T ALP +TQS  N   
Sbjct: 299 KFT-PEINKLQAAATARKQIREKAEDRNRTTTKYLYRDDYWVPTTFALPASTQSPNNPIS 357

Query: 349 KAASESPYNKEWKKANDRNYSVREENRRSPIALGIPIVTAAIAAAMVRMQVDQGVSDGLK 408
           K + E+   K  K++      V      SP+ L +P+  + IA A+++  V    +  LK
Sbjct: 358 KPSVET---KPTKQSRGLGSDVSRGGHVSPMRLVLPVSISIIATAIIQQMVRNDGASELK 414

Query: 409 EHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIGNR 451
           EH  GS+AL +VNS W+QV+L G+TWY IG AV+ ++E+I  +
Sbjct: 415 EHAAGSMALELVNSHWMQVILTGVTWYIIGMAVMGMLEMIARK 457

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147837842|emb|CAN73797.1| hypothetical protein VITISV_018825 [Vitis vinifera]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/430 (60%), Positives = 308/430 (71%), Gaps = 38/430 (8%)

Query: 1   MPTAATAWLPLFTPSISTITKNNSIPK----------TSRKLSNSNSVTC--------CK 42
           MP+     LPL+TP+ S IT+  S P+          T RKL  +NS+TC          
Sbjct: 1   MPSTC---LPLYTPTSSIITRT-STPRSAGLTFHHATTLRKLHGNNSITCKASSSSSSSS 56

Query: 43  ASLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSD 102
            S  +DFDLYDLLGI+SSSDQ QIK AYR LQKRCHPDIAG AGHDMAIILNE YSVLSD
Sbjct: 57  LSSLVDFDLYDLLGIESSSDQWQIKMAYRKLQKRCHPDIAGPAGHDMAIILNEVYSVLSD 116

Query: 103 PNSRLAYDKEQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTF 162
           PN RLAYDKEQAK AGLRGYTGKP+YSVW+GSESE+RAVFVDEVKCVGCLKCALFA KTF
Sbjct: 117 PNLRLAYDKEQAKIAGLRGYTGKPLYSVWYGSESEERAVFVDEVKCVGCLKCALFAEKTF 176

Query: 163 AIESAYGRARVVAQWADPEHN-PGSYRNVPSRLI--VERSDLAALEYLMAKQPRGTVRVG 219
           AIES YGRARVVAQWADPE+    +    P   I  VERS+LAALE+LM+KQPRG+VR+ 
Sbjct: 177 AIESVYGRARVVAQWADPEYKIQQAIDACPVDCISMVERSNLAALEFLMSKQPRGSVRMS 236

Query: 220 AGNTAGARVSNIFVDVKKFQTQYEDAMKKAA---GKDTDTNWEARLSAIQAIRSISNWLY 276
           AGN  GA VSNIFVDVKKFQT++ DAM KA+    K+ D   EAR+SAIQ IRSI+NWLY
Sbjct: 237 AGNAVGACVSNIFVDVKKFQTRFHDAMDKASTHGSKEKDDQREARISAIQTIRSITNWLY 296

Query: 277 WQLPN--AESYQNLTRSKQKLKEPNIKKLLDAAAARKQASQST----KSVPSNCMHHDEY 330
           WQ P   ++S Q+LTR   +L  PNI KL DAAAARKQA +ST    +++PS  ++  EY
Sbjct: 297 WQAPTGGSDSCQSLTRVAGRLSGPNINKLRDAAAARKQARESTEPRSRTMPSY-IYDAEY 355

Query: 331 WSPSTHALPDTTQSN---RSFKAASESPYNKEWKKANDRNYSVREENRRSPIALGIPIVT 387
           W PST ALP T Q+N       ++  SP +K+WK  +++++ V + NRRS     IP+ T
Sbjct: 356 WIPSTLALPATNQNNDLASKAASSESSPPSKQWKGKSEKDHGVSKNNRRSSTIWQIPLAT 415

Query: 388 AAIAAAMVRM 397
           A IAA +VR 
Sbjct: 416 ATIAAVVVRF 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
TAIR|locus:2166968	465	AT5G23240 [Arabidopsis thalian	0.969	0.944	0.552	1.6e-118
TAIR|locus:2052426	344	AT2G42750 [Arabidopsis thalian	0.547	0.720	0.287	1.3e-16
TAIR|locus:2827820	160	AT2G17880 "AT2G17880" [Arabido	0.249	0.706	0.318	1.8e-08
TAIR|locus:2088100	157	AT3G13310 [Arabidopsis thalian	0.189	0.547	0.365	2.3e-08
TAIR|locus:2135159	161	J11 "AT4G36040" [Arabidopsis t	0.165	0.465	0.363	3.8e-08
TAIR|locus:2119465	197	J20 "AT4G13830" [Arabidopsis t	0.207	0.477	0.365	1e-07
UNIPROTKB|Q55980	133	sll0662 "Ferredoxin (Bacterial	0.108	0.368	0.489	2.8e-07
UNIPROTKB|Q74B05	313	GSU2406 "DnaJ domain protein"	0.163	0.236	0.412	4.8e-07
TIGR_CMR|GSU_2406	313	GSU_2406 "dnaJ domain protein"	0.163	0.236	0.412	4.8e-07
UNIPROTKB|A6QM13	250	DNAJA1 "DnaJ homolog subfamily	0.178	0.324	0.413	5.1e-07

TAIR|locus:2166968 AT5G23240 [Arabidopsis thaliana (taxid:3702)]

 Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
 Identities = 257/465 (55%), Positives = 316/465 (67%)

Query:     1 MPTAATAWLPLFTPSISTITKNNSIPKTSRKLSNSNSVTCCKASLNMDFDLYDLLGIDSS 60
             +P +   W P  T S   IT  + +    R  S+S+S+T        DFDLYDLLGID S
Sbjct:    11 LPPSTATW-PCST-SQKLITVRSPLKFKCRATSSSSSIT--------DFDLYDLLGIDRS 60

Query:    61 SDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLR 120
             SD+SQIK+AYR LQKRCHPDIAG  GHDMAIILNEAY +LSDP SR AYDKEQAK   LR
Sbjct:    61 SDKSQIKSAYRALQKRCHPDIAGDPGHDMAIILNEAYQLLSDPISRQAYDKEQAKLEELR 120

Query:   121 GYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADP 180
             GYTGKPIYSVW G E+EQRA FVDEVKCVGCLKCAL A KTFAIE+AYGRARVVAQWADP
Sbjct:   121 GYTGKPIYSVWCGPETEQRAAFVDEVKCVGCLKCALCAEKTFAIETAYGRARVVAQWADP 180

Query:   181 EHN-PGSYRNVPSRLI--VERSDLAALEYLMAKQPRGTVRVGAGNTAGARVSNIFVDVKK 237
             E     +    P   I  VERSDLA LE+LM+KQPRG VR+G GNT G RVSN+FVDVKK
Sbjct:   181 ESKIKEAIEACPVDCISMVERSDLAPLEFLMSKQPRGNVRIGVGNTVGERVSNVFVDVKK 240

Query:   238 FQTQYEDAMKKAAGKDTDTNWEARLSAIQAIRSISNWLYWQL-P-----NAESYQNLTRS 291
             FQ +Y  AM +   K+T    E ++SA++AIRSISNWLYW+  P     + ES  +LT +
Sbjct:   241 FQERYAKAMSRTT-KETSQR-EVQISAVEAIRSISNWLYWRSSPYTKPLSPESNMSLTFT 298

Query:   292 KQKLK-EPNIKKLLDAAAARKQASQS--TKSVPSNCMHHDEYWSPSTHALPDTTQSNRSF 348
             K+K   +P+I+KL D  AA KQA QS  TK   S  +  ++YWSPS  ALP +  +N S 
Sbjct:   299 KRKKAVDPDIRKLQDVVAAMKQADQSGRTKEKGSAYLLGEDYWSPSNAALPSSGNNNGS- 357

Query:   349 KAASESPYNKEWKKANDRNYSVREENRRSPIALGIPIVTAAIAAAMVRMQVDQGVSDGLK 408
             KA+S     ++   + ++  S R ENRR       PI TA +A  +V+ Q     +  L 
Sbjct:   358 KASSNPQVTRKTFPSEEKPTS-RRENRRQFRIKKFPIGTAIVAVFLVQYQASYRAASELN 416

Query:   409 EHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVIGNRQE 453
             +H+GGSLAL IVNS W Q++LAG+TWYFIGA +++L+E + ++ E
Sbjct:   417 DHIGGSLALSIVNSPWQQILLAGVTWYFIGAMLLQLVEAVQHKLE 461

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2052426 AT2G42750 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 79/275 (28%), Positives = 124/275 (45%)

Query:    50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGH--DMAIILNEAYSVLSDPNSRL 107
             D Y +LG+   + Q +IK AY    K CHPD++G+     +  + +N+ Y +LSDP  R+
Sbjct:    76 DYYAVLGLLPDATQEEIKKAYYNCMKSCHPDLSGNDPETTNFCMFINDIYEILSDPVQRM 135

Query:   108 AYDKEQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESA 167
              YD+       + GYT   I + +    + +  VFVDE  C+GC  CA  A   F IE  
Sbjct:   136 VYDE-------IHGYTVTAI-NPFLDDSTPRDHVFVDEFACIGCKNCANVAPDIFQIEED 187

Query:   168 YGRARVVAQWADPEHNPGSYRNVPSRLIVERSDLAALEYLMAKQPRGTVRVGAGNTAGAR 227
             +GRAR   Q  +P+    +    P   I + S  AA   L+  + R   RV         
Sbjct:   188 FGRARACNQRGNPDLVQQAVETCPVDCIHQTS--AAQLSLLEDEMRRVERVNVALMLSGM 245

Query:   228 VSNIFVDVKKF-QTQYEDAMKKAAGKDTDTNWEARLSAIQAIRSISNWLYWQLPNAESYQ 286
              S   VDV +  ++++E    K          +AR   ++   +     YW   N    Q
Sbjct:   246 GSGA-VDVFRMARSRWEKRQAKVLN-------QARSRMMKRKNTDETPSYWD--NLWGKQ 295

Query:   287 N-LTRSKQKLKEPNIKKLLDAAAARKQASQSTKSV 320
             N   +S+++++E   +    AAAAR+    S + V
Sbjct:   296 NEYQKSEEEVQE---RAQRAAAAARRWREYSRRGV 327

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

TAIR|locus:2827820 AT2G17880 "AT2G17880" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 42/132 (31%), Positives = 64/132 (48%)

Query:    13 TPSISTITKNNSIPKTSRKLSNSN-SVTCCK-----ASLNMDFD----LYDLLGIDSSSD 62
             +PS S+ +  + I + S  LS +  S TC +       +   F     LY++L I   S 
Sbjct:    21 SPSFSSTSPPSRISRISPSLSTTTASYTCAEDLPRLRQIPQRFSATASLYEILEIPVGST 80

Query:    63 QSQIKTAYRMLQKRCHPDIA----GSAGHDMAIILNEAYSVLSDPNSRLAYDKE-----Q 113
               +IK+AYR L + CHPD+A     ++  D  + ++ AY  LSDP  R  YD+      +
Sbjct:    81 SQEIKSAYRRLARICHPDVARNSRDNSSADDFMKIHAAYCTLSDPEKRAVYDRRTLLRSR 140

Query:   114 AKTAGLRGYTGK 125
               TAG   Y G+
Sbjct:   141 PLTAGYGSYGGR 152

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2088100 AT3G13310 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 34/93 (36%), Positives = 54/93 (58%)

Query:    51 LYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYD 110
             LY+LL ++ ++  ++IKTAYR L K  HPD + S G D   I ++AY+ L+DP +R  YD
Sbjct:    65 LYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEI-HKAYATLADPTTRAIYD 123

Query:   111 K-----EQAKTAGLRGYTGKPIYSVWFGSESEQ 138
                    +   AG  G +G+ +Y+     E++Q
Sbjct:   124 STLRVPRRRVHAGAMGRSGR-VYATTRRWETDQ 155

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2135159 J11 "AT4G36040" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 32/88 (36%), Positives = 46/88 (52%)

Query:    51 LYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG-----SAGHDMAIILNEAYSVLSDPNS 105
             LYD+L +   +    IK+AYR L + CHPD+AG     S+  D  + ++ AY  LSDP  
Sbjct:    66 LYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPEK 125

Query:   106 RLAYDKEQAK--------TAGLRGYTGK 125
             R  YD+   +        T+GL  Y G+
Sbjct:   126 RSVYDRRMLRRSRPLTVGTSGLGSYVGR 153

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2119465 J20 "AT4G13830" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
 Identities = 38/104 (36%), Positives = 56/104 (53%)

Query:    13 TPSISTITKNNSIPKTSRKLSNSNSVTCCKASLNMDFDLYDLLGIDSSSDQSQIKTAYRM 72
             T S  T T+ +S    SR L++ + V   K S ++ F  YDLLG+  S    +IK AY+ 
Sbjct:    35 TISYPTRTRFSSTRIQSR-LTHDDPV---KQSEDLSF--YDLLGVTESVTLPEIKQAYKQ 88

Query:    73 LQKRCHPDIAG----SAGHDMAIILNEAYSVLSDPNSRLAYDKE 112
             L ++ HPD++         D  I + EAY  LSDP  R+ YD++
Sbjct:    89 LARKYHPDVSPPDRVEEYTDRFIRVQEAYETLSDPRRRVLYDRD 132

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

UNIPROTKB|Q55980 sll0662 "Ferredoxin (Bacterial type ferredoxin family)" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 126 (49.4 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 24/49 (48%), Positives = 30/49 (61%)

Query:   133 GSESEQRAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPE 181
             G E  +R V+VDEV C+GC  CA  A  TF IE  +GR+R  +Q  D E
Sbjct:    38 GGELRERGVYVDEVTCIGCKNCAHVAPNTFTIEQEHGRSRAFSQNGDDE 86

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q74B05 GSU2406 "DnaJ domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 143 (55.4 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 33/80 (41%), Positives = 46/80 (57%)

Query:    50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI--AGSAGHDMAIILNEAYSVLSDPNSRL 107
             D Y +LG+  ++ Q +++ AYR L ++ HPDI  AG A      I NEAY VLSDP+ R 
Sbjct:     6 DYYAILGVSKTATQEEVQRAYRKLARKYHPDINKAGDAEEKFKQI-NEAYEVLSDPDKRA 64

Query:   108 AYD---KEQAKTAGLRGYTG 124
              YD   ++     G +GY G
Sbjct:    65 TYDQLGRDWDGRHGTQGYQG 84

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2406 GSU_2406 "dnaJ domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 143 (55.4 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 33/80 (41%), Positives = 46/80 (57%)

Query:    50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI--AGSAGHDMAIILNEAYSVLSDPNSRL 107
             D Y +LG+  ++ Q +++ AYR L ++ HPDI  AG A      I NEAY VLSDP+ R 
Sbjct:     6 DYYAILGVSKTATQEEVQRAYRKLARKYHPDINKAGDAEEKFKQI-NEAYEVLSDPDKRA 64

Query:   108 AYD---KEQAKTAGLRGYTG 124
              YD   ++     G +GY G
Sbjct:    65 TYDQLGRDWDGRHGTQGYQG 84

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A6QM13 DNAJA1 "DnaJ homolog subfamily A member 1" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 36/87 (41%), Positives = 49/87 (56%)

Query:    52 YDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDK 111
             YD+LG+  ++ Q ++K AYR L  + HPD   + G     I ++AY VLSD   R  YDK
Sbjct:     8 YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQI-SQAYEVLSDAKKRELYDK 66

Query:   112 --EQA-KTAGLRGYTGKP--IYSVWFG 133
               EQA K  G  G  G P  I+ ++FG
Sbjct:    67 GGEQAIKEGGAGGGFGSPMDIFDMFFG 93

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	453
pfam00226	63	pfam00226, DnaJ, DnaJ domain	8e-18
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	3e-13
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	4e-13
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	7e-13
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	2e-12
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	3e-12
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-11
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	5e-11
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	5e-11
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	6e-11
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	1e-10
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	2e-10
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-10
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	3e-10
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	2e-09
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	4e-09
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	5e-09
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	4e-08
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	4e-08
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	6e-08
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	9e-08
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-07
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	1e-07
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	5e-07
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	5e-07
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	8e-07
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	8e-07
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	1e-06
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	1e-06
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	2e-06
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	2e-06
pfam13370	58	pfam13370, Fer4_13, 4Fe-4S single cluster domain	2e-06
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	2e-06
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	4e-06
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	5e-06
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	1e-05
pfam13459	60	pfam13459, Fer4_15, 4Fe-4S single cluster domain	2e-05
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	2e-05
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	9e-05
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	9e-05
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	4e-04
PRK03578	176	PRK03578, hscB, co-chaperone HscB; Provisional	6e-04
TIGR00714	155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	0.001

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 76.8 bits (190), Expect = 8e-18
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAG--HDMAIILNEAYSVLSDPNSRL 107
           D Y++LG+   +   +IK AYR L  + HPD         +    +NEAY VLSDP  R 
Sbjct: 1   DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 108 AYD 110
            YD
Sbjct: 61  IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 70.7 bits (174), Expect = 3e-13
 Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIA-GSAG-HDMAIILNEAYSVLSDPNSRL 107
           D Y++LG+   + + +IK AYR L K+ HPD   G     +    +NEAY VLSDP  R 
Sbjct: 5   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64

Query: 108 AYD 110
           AYD
Sbjct: 65  AYD 67

Length = 371

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 63.3 bits (155), Expect = 4e-13
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSD 102
           D YD+LG+   +   +IK AYR L  + HPD         +    +NEAY VLSD
Sbjct: 1   DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 62.6 bits (153), Expect = 7e-13
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS---AGHDMAIILNEAYSVLSDPNS 105
           D Y++LG+   +   +IK AYR L  + HPD          +    +NEAY VLSDP  
Sbjct: 2   DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 32/73 (43%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAG-HDMAIILNEAYSVLSDPNSRLA 108
           + YD LG+   + Q +IK AYR L K+ HPDI    G  +    + EAY  LSDP  R A
Sbjct: 5   EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAA 64

Query: 109 YDKEQAKTAGLRG 121
           YD  Q   AG  G
Sbjct: 65  YD--QYGAAGANG 75

Length = 380

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 47  MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAG-HDMAIILNEAYSVLSDPNS 105
           M  D Y++LG+   +D+ ++K AYR L ++ HPD+    G  D    +N AY VLSDP +
Sbjct: 1   MAADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPET 60

Query: 106 RLAYDKEQAKTAGLRGYTGKP 126
           R  YD  Q   AG+ G  G P
Sbjct: 61  RARYD--QFGEAGVSGAAGFP 79

Length = 374

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHD--MAIILNEAYSVLSDPNSRL 107
           D Y++LG+   + + +IK AYR L K+ HPD       +     I NEAY VLSDP  R 
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEI-NEAYEVLSDPEKRA 59

Query: 108 AYDK 111
            YD+
Sbjct: 60  QYDQ 63

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 63.0 bits (153), Expect = 5e-11
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
           D Y +LG+  ++ Q +IK A++ L ++ HPD+  S G +     +NEAY+VLSDP  R  
Sbjct: 5   DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRI 64

Query: 109 YDKEQAKTAGLRGYTGKPIYSVWFGS 134
           YD     TA   G+ G P      G 
Sbjct: 65  YDTYGT-TAASAGWQGPPPGPPGGGD 89

Length = 291

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 14/104 (13%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
           D Y++LG+  S+ + +IK AYR L K+ HPDI    G D     ++EAY VLSD   R  
Sbjct: 5   DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQ 64

Query: 109 YDK----EQAKTAGLRGYTGKP---------IYSVWFGSESEQR 139
           YD+       +  G  G+ G           I+S +FG    +R
Sbjct: 65  YDQFGHAGPNQGFGGGGFGGGDFGGGFGFEDIFSSFFGGGGRRR 108

Length = 376

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 63.3 bits (154), Expect = 6e-11
 Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
           D Y++LG+D ++D+ +IK AYR L ++ HPD++   G +     ++EAY+VLSD   R  
Sbjct: 6   DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQR 65

Query: 109 YDKEQAKTAGLRGYTGKPIY 128
           YD  Q   AG+ G++ + I+
Sbjct: 66  YD--QFGHAGMDGFSQEDIF 83

Length = 378

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 61.4 bits (148), Expect = 1e-10
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 44  SLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPD---IAGSAGHDMAIILNEAYSVL 100
            ++   D Y++LG+  ++   +IK AYR L  + HPD          +    +NEAY +L
Sbjct: 1   MMSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEIL 60

Query: 101 SDPNSRLAYDKEQAKTA 117
           SDP  R  YDK  A   
Sbjct: 61  SDPERRAEYDKIGADNY 77

Length = 237

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
           D Y+LLG+  ++   +IK+AYR L  + HPD     G       +NEAY+VLSD   R  
Sbjct: 3   DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAH 62

Query: 109 YDK-EQAKTAGLRG 121
           YD+   A  AG+ G
Sbjct: 63  YDRFGTAPGAGMPG 76

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI--AGSAGHDMAIILNEAYSVLSDPNSRL 107
           D Y++LG+D ++ + +IK AYR L K+ HPD+             +NEAY +LSDP  R 
Sbjct: 6   DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 65

Query: 108 AYDK 111
            YD+
Sbjct: 66  QYDQ 69

Length = 386

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
           D Y++LG+  ++ Q +IK AYR L ++ HPD   +   +     +NEAY VLSDP  R  
Sbjct: 4   DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKL 63

Query: 109 YDKEQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVD 144
           YD  Q   A   G   +       G E        +
Sbjct: 64  YD--QFGHAAFSGSGQQ-----QQGQEGFSDFGGGN 92

Length = 382

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 59.4 bits (143), Expect = 2e-09
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII---LNEAYSVLSDPNSR 106
           D Y++LGID  +D+ +IK A+R L K+ HPD   +   D A I   +NEA  VLS+P  R
Sbjct: 3   DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAP--DAASIFAEINEANDVLSNPKKR 60

Query: 107 LAYDK 111
             YDK
Sbjct: 61  ANYDK 65

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAG-HDMAIILNEAYSVLSDPNSRLA 108
           D Y++LG+  ++ + +I+ AYR L K+ HPD+  S   HD  + +NEA  VL D + R  
Sbjct: 5   DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQ 64

Query: 109 YDK 111
           YD+
Sbjct: 65  YDQ 67

Length = 372

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 57.5 bits (140), Expect = 5e-09
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII----LNEAYSVLSDPNS 105
           D Y++LG+  ++ + +IK AYR L  + HPD   + G   A      + EAY VLSDP  
Sbjct: 5   DYYEVLGVSRNASEDEIKKAYRKLAMKYHPD--RNPGDKEAEEKFKEIKEAYEVLSDPQK 62

Query: 106 RLAYD 110
           R AYD
Sbjct: 63  RAAYD 67

Length = 371

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAG-HDMAIILNEAYSVLSDPNSRLA 108
           D Y++LG+   +    IK AYR L  + HPD        +    ++EAY+VLSD   R  
Sbjct: 6   DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQ 65

Query: 109 YDK 111
           YD+
Sbjct: 66  YDR 68

Length = 377

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI--AGSAGHDMAIILNEAYSVLSDPNSRL 107
           D Y  LG+ S +   +IK AYR L +  HPD      A  +    ++EA+ VLSDP  R 
Sbjct: 10  DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69

Query: 108 AYDKEQAKTAG 118
            YD+ +   AG
Sbjct: 70  EYDETRRLFAG 80

Length = 392

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 14/105 (13%)

Query: 47  MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPN 104
           M  D Y LLG+  ++  ++IK AYR L +  HPD+     A      I + AY VLSDP 
Sbjct: 1   MARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEI-SVAYEVLSDPE 59

Query: 105 SRLAYD-----KEQAKTAGLRGYTGK-----PIYSVWFGSESEQR 139
            R   D      E A   G  G+ G       ++  +FG  +  R
Sbjct: 60  KRRIVDLGGDPLESAGGGG-GGFGGGFGGLGDVFEAFFGGGAASR 103

Length = 378

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 53.4 bits (128), Expect = 9e-08
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 47  MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI----AGSAGHDMAIILNEAYSVLSD 102
           M  D Y +LG+D ++ Q  IK A+R L K+ HPD+       A      I +EAY VLSD
Sbjct: 1   MAKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEI-SEAYEVLSD 59

Query: 103 PNSRLAYDK 111
           P  R  YD+
Sbjct: 60  PQKRRQYDQ 68

Length = 365

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 9/82 (10%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIIL----NEAYSVLSDPNS 105
           D Y++LG+   + + +IK +YR L  + HPD   + G   A  L     EAY VLSDP  
Sbjct: 5   DYYEILGVTRDASEEEIKKSYRKLAMKYHPD--RNPGDKEAEELFKEAAEAYEVLSDPKK 62

Query: 106 RLAYDK---EQAKTAGLRGYTG 124
           R  YD+   E     G  G++G
Sbjct: 63  RGIYDQYGHEGLSGTGFSGFSG 84

Length = 366

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 24/113 (21%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI----AGSAGHDMAIILNEAYSVLSDPNS 105
           D Y++LG+  ++ Q +IK AY+ L K  HPD        A      I  EAY VLSDP  
Sbjct: 5   DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEI-QEAYEVLSDPQK 63

Query: 106 RLAYDK----------EQAKTAG---------LRGYTGKPIYSVWFGSESEQR 139
           R  YD+          ++ ++ G               + I+ ++FG    Q 
Sbjct: 64  RAMYDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQE 116

Length = 369

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 47  MDF-DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAI-ILNEAYSVLSDPN 104
           M+  D Y ++G+  + D   IKTAYR L ++ HPD++     +     + EA+ VLSD  
Sbjct: 1   MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQ 60

Query: 105 SRLAYDK 111
            R  YD+
Sbjct: 61  RRAEYDQ 67

Length = 306

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 51.2 bits (122), Expect = 5e-07
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-GHDMAIILNEAYSVLSDPNSRLA 108
           D Y++LG+D ++   ++K AYR L ++ HPD+  +    D    + EAY  LSDP  +  
Sbjct: 5   DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAH 64

Query: 109 YDK 111
           YD+
Sbjct: 65  YDQ 67

Length = 371

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 8/79 (10%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMA----IILNEAYSVLSDPNS 105
           D Y++LG++  +   +IK A+R L  + HPD   + G+  A      +NEAY VLSDP  
Sbjct: 5   DYYEVLGLEKGASDDEIKKAFRKLAIKYHPD--KNKGNKEAEEKFKEINEAYQVLSDPQK 62

Query: 106 RLAYDKEQAKTAGLRGYTG 124
           +  YD  Q  TA   G  G
Sbjct: 63  KAQYD--QFGTADFNGAGG 79

Length = 380

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 50.4 bits (120), Expect = 8e-07
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 47  MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNS 105
           M  D Y +LG+  ++ Q+ +K AY  L K+ HPD   +   +     +N AY VL D   
Sbjct: 1   MSQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQK 60

Query: 106 RLAYDK 111
           R AYD+
Sbjct: 61  RAAYDR 66

Length = 372

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 47  MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI--AGSAGHDMAIILNEAYSVLSDPN 104
           M  D Y++LG+  S+D+ +IK AYR L  + HPD         +    +NEAY VLS+ +
Sbjct: 1   MKRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDD 60

Query: 105 SRLAYDK 111
            R  YD+
Sbjct: 61  KRRRYDQ 67

Length = 397

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI-AGSAGHDMAII-LNEAYSVLSDPNSRL 107
           D Y +LG+  ++   +IK AYR L  + HPD   G A  +     ++EAY VLSD   R 
Sbjct: 2   DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61

Query: 108 AYDK--EQAKTAGLRGYTG 124
           +YD+  +    AG  G+ G
Sbjct: 62  SYDRYGKDGPFAGAGGFGG 80

Length = 391

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 52  YDLLGIDSSSDQSQIKTAYRMLQKRCHPD--IAGSAGHDMAIILNEAYSVLSDPNSRLAY 109
           YD+LG+  S++  +IK+AYR L  + HPD         +      EAY +L DP  R AY
Sbjct: 7   YDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAY 66

Query: 110 DKEQAKTAGLRGYTG 124
           D  Q   AG+    G
Sbjct: 67  D--QFGKAGVNAGAG 79

Length = 372

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 51  LYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYD 110
           LY++L +      S+IK AYR L  + HPD  G    +    ++ AY VLSDP  R  YD
Sbjct: 30  LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDP--EKFKEISRAYEVLSDPEKRKIYD 87

Query: 111 K--EQAKTAGLRGYTGKPIYSVWFG 133
           +  E+    G +      ++ + FG
Sbjct: 88  EYGEEGLEGGEQPADASDLFDLIFG 112

Length = 421

>gnl|CDD|222081 pfam13370, Fer4_13, 4Fe-4S single cluster domain

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 143 VDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEH 182
           VD   C+GC  C   A   FA +   G + V+ Q    E 
Sbjct: 1   VDRDTCIGCGLCREIAPDVFAYDDDGGASVVLDQPVPEEE 40

Length = 58

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI-AGSAGHDMAII-LNEAYSVLSDPNSRL 107
           D Y +LG+   + +++IK AYR L +  HPD   G A  +     ++EAY VLSD   R 
Sbjct: 10  DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69

Query: 108 AYDKEQA 114
            YD+ ++
Sbjct: 70  EYDEARS 76

Length = 389

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 47  MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMA----IILNEAYSVLSD 102
           M+   Y++L ++  S+Q  IK +YR L  + HPD   +AG   A     ++NEAY VLSD
Sbjct: 1   MELSYYEILEVEKHSNQETIKKSYRKLALKYHPD--RNAGDKEAEEKFKLINEAYGVLSD 58

Query: 103 PNSRLAYDK 111
              R  YD+
Sbjct: 59  EKKRALYDR 67

Length = 369

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 12/81 (14%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI------AGSAGHDMAIILNEAYSVLSDP 103
           D Y++LG+  ++   +IK AYR    + HPD       A     + A    EAY VLSDP
Sbjct: 6   DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAA----EAYDVLSDP 61

Query: 104 NSRLAYDKEQAKTAGLRGYTG 124
           + R  YD  Q   AG+ G  G
Sbjct: 62  DKRSRYD--QFGHAGVGGAAG 80

Length = 386

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 12/81 (14%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI------AGSAGHDMAIILNEAYSVLSDP 103
           D Y++LG+   + + +IK AYR L  + HPD       A     + A    EAY VL D 
Sbjct: 5   DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAA----EAYEVLRDA 60

Query: 104 NSRLAYDKEQAKTAGLRGYTG 124
             R  YD  +   AG+ G  G
Sbjct: 61  EKRARYD--RFGHAGVNGNGG 79

Length = 373

>gnl|CDD|222145 pfam13459, Fer4_15, 4Fe-4S single cluster domain

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 142 FVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPE 181
           FVD   C+GC  C   A   F ++   G+ARV+    +  
Sbjct: 1   FVDRDTCIGCGLCVALAPDVFELDE-DGKARVILDEGEVP 39

Length = 60

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 47  MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII--LNEAYSVLSDPN 104
           M  D Y++LG+   + + +IK AYR +  + HPD         +I     EAY VL D N
Sbjct: 1   MKRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDN 60

Query: 105 SRLAYDK 111
            R  YD+
Sbjct: 61  KRAQYDR 67

Length = 365

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 44.6 bits (105), Expect = 9e-05
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 7/68 (10%)

Query: 49  FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMA-------IILNEAYSVLS 101
           FD Y++LGID  + +  IK  YRML  + HPD A    +++          + +AY +L+
Sbjct: 98  FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLT 157

Query: 102 DPNSRLAY 109
           D   R  Y
Sbjct: 158 DKKRRENY 165

Length = 610

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 43.6 bits (104), Expect = 9e-05
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPD 80
           D Y +LG+  S D  +IK AYR L    HPD
Sbjct: 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPD 231

Length = 267

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 12/99 (12%)

Query: 50  DLYDLLGID---SSSDQSQIKTAYRMLQKRCHPDI---AGSAGHDMAI-ILNEAYSVLSD 102
           DLY LLG+    + +   QI  A++    + HPD     G+ G D    ++ +A  VL D
Sbjct: 44  DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD 103

Query: 103 PNSRLAYDK--EQAKTAGLRGYTGKPIYSVW---FGSES 136
              RL YD     A     R YT    + VW   F  E+
Sbjct: 104 RKLRLQYDSNDFDADVPPPRIYTPDEFFEVWEPVFEREA 142

Length = 379

>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 15/78 (19%)

Query: 43  ASLNMD-FDLYDL---LGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGH-------DMAI 91
            SL  D F L+ L     +D    ++ +  AYR +Q + HPD   +AG          A 
Sbjct: 2   VSLKDDHFSLFGLPARFALD----EAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWAT 57

Query: 92  ILNEAYSVLSDPNSRLAY 109
             NEAY  L DP  R  Y
Sbjct: 58  RANEAYQTLRDPLKRARY 75

Length = 176

>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 62  DQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-----LNEAYSVLSDPNSRLAY 109
           DQS+++  YR LQ + HPD +G A   +A       LN+AY  L DP  R  Y
Sbjct: 4   DQSRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	453
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.92
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.88
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.86
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.83
PRK14296	372	chaperone protein DnaJ; Provisional	99.82
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.79
PRK14287	371	chaperone protein DnaJ; Provisional	99.79
PRK14298	377	chaperone protein DnaJ; Provisional	99.78
PRK14282	369	chaperone protein DnaJ; Provisional	99.78
PRK14276	380	chaperone protein DnaJ; Provisional	99.77
PRK14280	376	chaperone protein DnaJ; Provisional	99.77
PRK14288	369	chaperone protein DnaJ; Provisional	99.77
PRK14278	378	chaperone protein DnaJ; Provisional	99.76
PRK14297	380	chaperone protein DnaJ; Provisional	99.76
PRK14286	372	chaperone protein DnaJ; Provisional	99.76
PRK14284	391	chaperone protein DnaJ; Provisional	99.75
PRK14277	386	chaperone protein DnaJ; Provisional	99.75
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.74
PRK10767	371	chaperone protein DnaJ; Provisional	99.73
PRK14294	366	chaperone protein DnaJ; Provisional	99.72
PRK14285	365	chaperone protein DnaJ; Provisional	99.72
PRK14279	392	chaperone protein DnaJ; Provisional	99.72
PRK14301	373	chaperone protein DnaJ; Provisional	99.7
PRK14299	291	chaperone protein DnaJ; Provisional	99.68
PRK14283	378	chaperone protein DnaJ; Provisional	99.68
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.68
PRK14292	371	chaperone protein DnaJ; Provisional	99.67
PRK14290	365	chaperone protein DnaJ; Provisional	99.66
PRK14291	382	chaperone protein DnaJ; Provisional	99.66
PRK14295	389	chaperone protein DnaJ; Provisional	99.66
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.65
PRK14293	374	chaperone protein DnaJ; Provisional	99.64
PRK14281	397	chaperone protein DnaJ; Provisional	99.64
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.63
PRK14289	386	chaperone protein DnaJ; Provisional	99.63
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.63
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.63
PRK14300	372	chaperone protein DnaJ; Provisional	99.61
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.61
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.61
PHA03102	153	Small T antigen; Reviewed	99.56
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.54
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.53
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.51
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.48
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.48
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.47
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.38
PRK05014	171	hscB co-chaperone HscB; Provisional	99.35
PRK01356	166	hscB co-chaperone HscB; Provisional	99.34
PRK03578	176	hscB co-chaperone HscB; Provisional	99.3
PRK00294	173	hscB co-chaperone HscB; Provisional	99.29
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.26
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.24
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.18
PTZ00100	116	DnaJ chaperone protein; Provisional	99.17
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.16
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.05
PHA02624	647	large T antigen; Provisional	99.02
PRK01773	173	hscB co-chaperone HscB; Provisional	98.93
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.91
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.78
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.69
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.53
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.08
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	97.99
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.63
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	96.71
COG1141	68	Fer Ferredoxin [Energy production and conversion]	96.67
PF13459	65	Fer4_15: 4Fe-4S single cluster domain	96.64
PF13370	58	Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A	96.42
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.58
KOG0431	453	consensus Auxilin-like protein and related protein	94.2
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	93.78
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	89.82

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.2e-26  Score=235.34  Aligned_cols=127  Identities=32%  Similarity=0.519  Sum_probs=95.3

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCC----
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG--SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLR----  120 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~--~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~----  120 (453)
                      ...|||+||||+++||.+||||||||||++||||+|+  +.++++|++|++||+|||||++|++||++|.......    
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg   81 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGG   81 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCC
Confidence            5689999999999999999999999999999999998  3489999999999999999999999999987664311    


Q ss_pred             ----CCC--CCCCcccccCCcch----h-h-----------------hhc-----ccceecccCcccccccCcee----e
Q 012925          121 ----GYT--GKPIYSVWFGSESE----Q-R-----------------AVF-----VDEVKCVGCLKCALFAGKTF----A  163 (453)
Q Consensus       121 ----g~~--g~~~fs~ffG~~~~----~-~-----------------~vF-----vDE~~CIGC~kCsl~a~~tF----a  163 (453)
                          +|.  -.++|+.|||++..    . +                 +++     +.....+-|..|++...+..    .
T Consensus        82 ~g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~t  161 (371)
T COG0484          82 FGFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKT  161 (371)
T ss_pred             CCcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCc
Confidence                122  26688899954321    1 0                 111     11135677888887754433    4


Q ss_pred             eecccCccee
Q 012925          164 IESAYGRARV  173 (453)
Q Consensus       164 ie~~~GRARV  173 (453)
                      +.+|.|.+.+
T Consensus       162 C~tC~G~G~v  171 (371)
T COG0484         162 CPTCNGSGQV  171 (371)
T ss_pred             CCCCCCcCeE
Confidence            5566676644

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.2e-23  Score=205.67  Aligned_cols=232  Identities=27%  Similarity=0.283  Sum_probs=159.9

Q ss_pred             CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhc---CC
Q 012925           45 LNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA--GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTA---GL  119 (453)
Q Consensus        45 s~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~--a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~---~~  119 (453)
                      +....|+|+|||++++|+.++|||+||+|+++||||++++.  ++++|++||+||++|+||.+|..||.+|..+.   +.
T Consensus        27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e~  106 (279)
T KOG0716|consen   27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAEQ  106 (279)
T ss_pred             ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHHh
Confidence            45578999999999999999999999999999999999864  89999999999999999999999999977654   33


Q ss_pred             CCCCCCCCcccccCCcchhhhhcccceeccc-Cccc---ccccCceeeeecccCcceeecccCCCCCCCccccccceEEE
Q 012925          120 RGYTGKPIYSVWFGSESEQRAVFVDEVKCVG-CLKC---ALFAGKTFAIESAYGRARVVAQWADPEHNPGSYRNVPSRLI  195 (453)
Q Consensus       120 ~g~~g~~~fs~ffG~~~~~~~vFvDE~~CIG-C~kC---sl~a~~tFaie~~~GRARV~~Q~~d~E~~iq~IqsCPvIs~  195 (453)
                      .|.++...+.+|.++.......++|...|.+ |..|   ..++  .+.        |...|+.+++...+.++.|     
T Consensus       107 fg~d~~~~~~v~~~~~~~~~~a~~dll~g~~~c~~c~~cc~~~--~~~--------~~c~~~~~P~~~~~~~~~~-----  171 (279)
T KOG0716|consen  107 FGEDSKIIYFVFSSPWIKATAACFDLLTGQRHCLCCRACCCCC--CCN--------RFCCGKAKPEVSEQHDYYC-----  171 (279)
T ss_pred             hcccCcceEEEecchhhhHHhhhhhhhhcchhhhhHHhHhhhh--cch--------HHHhhccCCccccchhhHH-----
Confidence            4556666777777766666677777754322 2222   1111  111        3445666665522225555     


Q ss_pred             eccccHHHHHHHHhhCCCcceeeccccccCcccccceechhhHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhhccc
Q 012925          196 VERSDLAALEYLMAKQPRGTVRVGAGNTAGARVSNIFVDVKKFQTQYEDAMKKAAGKDTDTNWEARLSAIQAIRSISNWL  275 (453)
Q Consensus       196 Ver~~laaLeflm~~~P~~~l~~~ag~~~g~~~~nvfv~~~~F~~~~~~~~~~~~~~es~~q~eaR~~a~~~~~~~~~~~  275 (453)
                       .+..+..++|++..+++..+....+......++|.+++...|.            ...-.+++..+.+-..++.+.+|.
T Consensus       172 -~~s~i~~~~~l~~~~~~~~~~~~~ed~~i~~vs~~~~~v~~~~------------~~~~S~r~~~v~~~v~~~p~~~~~  238 (279)
T KOG0716|consen  172 -HRSRIALLNFLQSNNKRVCLSHLLEDVFIDLVSNGAYDVGFSE------------RVLYSKREVIVGQPVFDMPISLWI  238 (279)
T ss_pred             -hhchhhhhhhhhhccccccccccchhhhhhhhhhhhccccccc------------ccccCccchhhCceeeccCccccc
Confidence             5666788999999999877665555556666777777754441            112235666666666677788998


Q ss_pred             ccccCccccccccchhhccccchhHHHHHH
Q 012925          276 YWQLPNAESYQNLTRSKQKLKEPNIKKLLD  305 (453)
Q Consensus       276 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (453)
                      +=+.|.+.+.-+++..++ ...++++.+++
T Consensus       239 ~~~~~~~~~~~~~~er~~-~i~~~~~~~~~  267 (279)
T KOG0716|consen  239 KPHSFRTWSSGNATERTQ-LIAPLIRSYYY  267 (279)
T ss_pred             cccCcccccccccccchh-hcCCcccchhh
Confidence            444455544445554443 34455666555

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.6e-22  Score=203.26  Aligned_cols=89  Identities=35%  Similarity=0.567  Sum_probs=76.8

Q ss_pred             CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCC--
Q 012925           45 LNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA--GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLR--  120 (453)
Q Consensus        45 s~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~--a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~--  120 (453)
                      .....|||+||||+++|+..|||+||||||++||||||+++  ++++|++|+.||+|||||++|+.||++|.+.....  
T Consensus        12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~   91 (336)
T KOG0713|consen   12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENK   91 (336)
T ss_pred             hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccc
Confidence            35578999999999999999999999999999999999844  79999999999999999999999999998876532  


Q ss_pred             ---CCCC-CCCcccccC
Q 012925          121 ---GYTG-KPIYSVWFG  133 (453)
Q Consensus       121 ---g~~g-~~~fs~ffG  133 (453)
                         +..+ .++|+.||+
T Consensus        92 ~~~~g~~~~~~f~~~f~  108 (336)
T KOG0713|consen   92 DGEGGGGGNDIFSAFFG  108 (336)
T ss_pred             ccccCCcccchHHHhhc
Confidence               2222 467777776

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=4.8e-21  Score=194.04  Aligned_cols=118  Identities=32%  Similarity=0.475  Sum_probs=89.8

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCCCCC-CC
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGYT-GK  125 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~g~~-g~  125 (453)
                      ....||+||||+++||.+|||||||+|+++||||||+. +.++|++|.+||+|||||++|+.||++|.+....+++. +.
T Consensus         2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~   80 (337)
T KOG0712|consen    2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGF   80 (337)
T ss_pred             cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCC
Confidence            35689999999999999999999999999999999954 78999999999999999999999999998876443332 22


Q ss_pred             CCcccccCCcc--h---hh--------hhcccc-----------eecccCcccccccCceeeee
Q 012925          126 PIYSVWFGSES--E---QR--------AVFVDE-----------VKCVGCLKCALFAGKTFAIE  165 (453)
Q Consensus       126 ~~fs~ffG~~~--~---~~--------~vFvDE-----------~~CIGC~kCsl~a~~tFaie  165 (453)
                      ..|+.|||.+.  .   .+        .++.++           ..-.-|..|.+..+..+...
T Consensus        81 ~~f~~~F~~g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~  144 (337)
T KOG0712|consen   81 GGFSQFFGFGGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAP  144 (337)
T ss_pred             ccHHHhccCCCcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCC
Confidence            23888886431  1   11        011111           24566888888877766553

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=8.5e-21  Score=195.87  Aligned_cols=69  Identities=35%  Similarity=0.600  Sum_probs=64.0

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG-SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~-~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      ...|||+||||+++|+.+|||+|||+||++||||+++ +.++++|++|++||+|||||++|+.||++|..
T Consensus         2 ~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~   71 (372)
T PRK14296          2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA   71 (372)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence            3579999999999999999999999999999999986 34789999999999999999999999998764

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.79  E-value=6.2e-20  Score=192.24  Aligned_cols=87  Identities=30%  Similarity=0.482  Sum_probs=73.0

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCC--CCCC
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGL--RGYT  123 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~--~g~~  123 (453)
                      +...|||+||||+++||.+|||+|||+||++||||+++  ..++|++|++||+||+||.+|+.||+++......  .+.+
T Consensus        25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~--~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~~~d  102 (421)
T PTZ00037         25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG--DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPAD  102 (421)
T ss_pred             ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCCCcc
Confidence            34679999999999999999999999999999999985  3589999999999999999999999988654321  1222


Q ss_pred             CCCCcccccCC
Q 012925          124 GKPIYSVWFGS  134 (453)
Q Consensus       124 g~~~fs~ffG~  134 (453)
                      ..++|+.|||+
T Consensus       103 ~~d~f~~~Fgg  113 (421)
T PTZ00037        103 ASDLFDLIFGG  113 (421)
T ss_pred             hhhhHHHhhcc
Confidence            34678888874

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=9.7e-20  Score=187.96  Aligned_cols=87  Identities=31%  Similarity=0.628  Sum_probs=72.2

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCC-------
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG-SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGL-------  119 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~-~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~-------  119 (453)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++ +.++++|++|++||+||+||.+|+.||++|......       
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~   82 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA   82 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence            469999999999999999999999999999999986 346789999999999999999999999998653221       


Q ss_pred             CCCCC-CCCcccccCC
Q 012925          120 RGYTG-KPIYSVWFGS  134 (453)
Q Consensus       120 ~g~~g-~~~fs~ffG~  134 (453)
                      .+|.+ .++|+.|||+
T Consensus        83 ~~f~~~~d~f~~~fgg   98 (371)
T PRK14287         83 GDFGGFSDIFDMFFGG   98 (371)
T ss_pred             ccccchHHHHHhhhcc
Confidence            11111 2568888874

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=1.4e-19  Score=187.17  Aligned_cols=87  Identities=30%  Similarity=0.516  Sum_probs=72.0

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCC------
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLR------  120 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~------  120 (453)
                      ..|||+||||+++|+.+|||+|||+||++||||+++. .+.++|++|++||+||+||.+|+.||++|.......      
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~   83 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI   83 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence            4699999999999999999999999999999999863 367899999999999999999999999886432110      


Q ss_pred             ----CCC-CCCCcccccCC
Q 012925          121 ----GYT-GKPIYSVWFGS  134 (453)
Q Consensus       121 ----g~~-g~~~fs~ffG~  134 (453)
                          ++. -.++|+.|||+
T Consensus        84 ~~~~~~~~~~d~f~~~Fgg  102 (377)
T PRK14298         84 FRGADFGGFGDIFEMFFGG  102 (377)
T ss_pred             cccCCcCcchhhhHhhhcC
Confidence                111 12578888874

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=2.1e-19  Score=185.30  Aligned_cols=69  Identities=36%  Similarity=0.548  Sum_probs=63.7

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      ...|||+||||+++||.+|||+|||+|+++||||+++..   +.++|++|++||+||+||.+|+.||+++..
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~   73 (369)
T PRK14282          2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV   73 (369)
T ss_pred             CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence            457999999999999999999999999999999998642   578999999999999999999999998764

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=2.7e-19  Score=185.18  Aligned_cols=68  Identities=41%  Similarity=0.664  Sum_probs=63.6

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      ..|||+||||+++||.+|||+|||+|+++||||+++. .++++|++|++||+||+||.+|+.||++|..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   71 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA   71 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence            5799999999999999999999999999999999863 4689999999999999999999999998864

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=3.5e-19  Score=184.10  Aligned_cols=69  Identities=38%  Similarity=0.606  Sum_probs=64.0

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG-SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~-~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++ +.++++|++|++||+||+||.+|+.||++|...
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   72 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG   72 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence            469999999999999999999999999999999986 347899999999999999999999999988653

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=3.5e-19  Score=183.75  Aligned_cols=69  Identities=35%  Similarity=0.610  Sum_probs=64.0

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      ..|||+||||+++||.+|||+|||+||++||||+++.  .+.++|++|++||+||+||.+|+.||++|...
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~   72 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG   72 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccc
Confidence            4799999999999999999999999999999999973  36899999999999999999999999998653

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=6.7e-19  Score=182.16  Aligned_cols=86  Identities=31%  Similarity=0.567  Sum_probs=70.9

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcC----CCCCC
Q 012925           49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAG----LRGYT  123 (453)
Q Consensus        49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~----~~g~~  123 (453)
                      .|||+||||+++|+.+|||+|||+|+++||||+++.. ++++|++|++||+||+||.+|+.||++|.....    ..++.
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~   82 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFG   82 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCC
Confidence            6999999999999999999999999999999999733 678999999999999999999999998754211    01111


Q ss_pred             ----C-CCCcccccCC
Q 012925          124 ----G-KPIYSVWFGS  134 (453)
Q Consensus       124 ----g-~~~fs~ffG~  134 (453)
                          + .++|+.|||+
T Consensus        83 ~~f~~~~d~f~~ffgg   98 (378)
T PRK14278         83 GGFGGLGDVFEAFFGG   98 (378)
T ss_pred             cCcCchhHHHHHHhCC
Confidence                1 2568888874

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=6.3e-19  Score=182.35  Aligned_cols=70  Identities=33%  Similarity=0.577  Sum_probs=64.2

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++.  .++++|++|++||+||+||.+|+.||++|...
T Consensus         2 ~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~   73 (380)
T PRK14297          2 ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD   73 (380)
T ss_pred             CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence            34799999999999999999999999999999999963  36899999999999999999999999987653

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=4.8e-19  Score=182.90  Aligned_cols=70  Identities=34%  Similarity=0.565  Sum_probs=64.4

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG--SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~--~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      ...|||+||||+++|+.+|||+|||+||++||||+++  +.+.++|++|++||+||+||.+|+.||+++...
T Consensus         2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   73 (372)
T PRK14286          2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG   73 (372)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence            3579999999999999999999999999999999986  336899999999999999999999999988653

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.4e-18  Score=180.58  Aligned_cols=67  Identities=34%  Similarity=0.573  Sum_probs=62.6

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      .|||+||||+++||.+|||+|||+|+++||||+++.  .+.++|++|++||+||+||.+|+.||+++..
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   69 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD   69 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence            489999999999999999999999999999999973  3688999999999999999999999998764

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.2e-18  Score=180.59  Aligned_cols=68  Identities=38%  Similarity=0.666  Sum_probs=63.3

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  .++++|++|++||+||+||.+|+.||++|..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~   73 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA   73 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence            4799999999999999999999999999999999863  3678999999999999999999999998764

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.74  E-value=2.8e-18  Score=175.71  Aligned_cols=67  Identities=39%  Similarity=0.656  Sum_probs=62.4

Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        50 DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      |||+||||+++|+.+|||+|||+|+++||||+++. .+.++|++|++||++|+||.+|+.||.++...
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~   68 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG   68 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence            79999999999999999999999999999999963 46889999999999999999999999987653

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=3e-18  Score=176.65  Aligned_cols=69  Identities=36%  Similarity=0.600  Sum_probs=63.5

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++.  .+.++|++|++||++|+||.+|+.||+++..
T Consensus         2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~   72 (371)
T PRK10767          2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA   72 (371)
T ss_pred             CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence            35799999999999999999999999999999999863  3678999999999999999999999998764

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=3.5e-18  Score=176.05  Aligned_cols=70  Identities=33%  Similarity=0.564  Sum_probs=64.5

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++.  .+.++|++|++||+||+||.+|+.||++|...
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g   73 (366)
T PRK14294          2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG   73 (366)
T ss_pred             CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence            35799999999999999999999999999999999963  36789999999999999999999999998653

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=3.4e-18  Score=176.21  Aligned_cols=68  Identities=32%  Similarity=0.541  Sum_probs=63.1

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      ..|||+||||+++||.+|||+|||+|+++||||+++.  .+.++|++|++||+||+||.+|..||+++..
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~   71 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT   71 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence            3699999999999999999999999999999999863  3678999999999999999999999998764

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=5.3e-18  Score=176.30  Aligned_cols=68  Identities=37%  Similarity=0.591  Sum_probs=63.4

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      ...|||+||||+++|+.+|||+|||+||++||||+++.  .+.++|++|++||+|||||++|+.||+++.
T Consensus         7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            35799999999999999999999999999999999873  368999999999999999999999999874

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=9.4e-18  Score=173.40  Aligned_cols=69  Identities=32%  Similarity=0.495  Sum_probs=63.8

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA--GHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~--a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++..  +.++|++|++||+||+||.+|+.||+++...
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g   73 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG   73 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence            57999999999999999999999999999999998633  5789999999999999999999999988653

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=1.9e-17  Score=165.81  Aligned_cols=69  Identities=35%  Similarity=0.607  Sum_probs=64.0

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG-SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~-~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      ...|||+||||+++||.+|||+|||+|+++||||+++ +.++++|++|++||++|+||.+|+.||+++..
T Consensus         2 ~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299          2 AYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            3579999999999999999999999999999999986 34689999999999999999999999998764

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=2.3e-17  Score=170.73  Aligned_cols=68  Identities=37%  Similarity=0.653  Sum_probs=63.9

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG-SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~-~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++ +.++++|++|++||++|+||.+|+.||++|..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~   72 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA   72 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence            579999999999999999999999999999999986 44789999999999999999999999998764

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=5.2e-17  Score=162.78  Aligned_cols=89  Identities=30%  Similarity=0.481  Sum_probs=73.0

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCCCCCC
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGYTG  124 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~g~~g  124 (453)
                      ....|||+||||+++|+..|||+||++|+++||||.+... +.++|++|.+||++|+|+++|+.||.++.......+..+
T Consensus        40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~~~g~~  119 (288)
T KOG0715|consen   40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGEFGGNP  119 (288)
T ss_pred             CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccccccCCc
Confidence            3444999999999999999999999999999999999744 789999999999999999999999999876411111134


Q ss_pred             CCCcccccCC
Q 012925          125 KPIYSVWFGS  134 (453)
Q Consensus       125 ~~~fs~ffG~  134 (453)
                      .+.|..+|++
T Consensus       120 ~~~~~~~~~~  129 (288)
T KOG0715|consen  120 FDVFLEFFGG  129 (288)
T ss_pred             cchHHHhhcc
Confidence            5555666655

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=2.7e-17  Score=169.61  Aligned_cols=86  Identities=34%  Similarity=0.591  Sum_probs=71.6

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCC-------C
Q 012925           49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGL-------R  120 (453)
Q Consensus        49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~-------~  120 (453)
                      .|||+||||+++|+.++||+|||+|++++|||+++. .+.++|++|++||+||+||.+|+.||.+|......       .
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~   81 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG   81 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence            599999999999999999999999999999999964 36899999999999999999999999987643110       1


Q ss_pred             C--CCCCCCcccccCC
Q 012925          121 G--YTGKPIYSVWFGS  134 (453)
Q Consensus       121 g--~~g~~~fs~ffG~  134 (453)
                      +  ++..++|+.|||+
T Consensus        82 ~~~~d~~d~f~~~fg~   97 (371)
T PRK14292         82 GMGFDPMDIFEQLFGG   97 (371)
T ss_pred             ccCCChHHHHHHhhCC
Confidence            1  2234678888874

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=4.2e-17  Score=168.00  Aligned_cols=67  Identities=39%  Similarity=0.656  Sum_probs=62.7

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS---AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~---~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      .|||+||||+++|+.+|||+|||+|++++|||+++.   .+.++|++|++||++|+||.+|+.||.+|..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~   72 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV   72 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence            699999999999999999999999999999999863   3679999999999999999999999998764

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=5.8e-17  Score=167.97  Aligned_cols=68  Identities=38%  Similarity=0.646  Sum_probs=63.5

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++. .+.++|++|++||+||+||.+|+.||+++..
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~   70 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA   70 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence            4799999999999999999999999999999999973 4689999999999999999999999998764

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=6.9e-17  Score=167.86  Aligned_cols=65  Identities=35%  Similarity=0.631  Sum_probs=61.0

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhH
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDK  111 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~  111 (453)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++.  .+.++|++|++||+||+||.+|+.||+
T Consensus         7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            35799999999999999999999999999999999863  368999999999999999999999998

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=8.7e-17  Score=166.80  Aligned_cols=67  Identities=33%  Similarity=0.609  Sum_probs=63.3

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhc
Q 012925           51 LYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTA  117 (453)
Q Consensus        51 yYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~  117 (453)
                      ||+||||.++|+..+||++||+|||+||||++++.   +++.|+.|+.||+|||||+.|..||.++.+.+
T Consensus        10 ~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil   79 (508)
T KOG0717|consen   10 YYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL   79 (508)
T ss_pred             HHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence            99999999999999999999999999999999765   68999999999999999999999999987654

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=1.4e-16  Score=164.57  Aligned_cols=69  Identities=36%  Similarity=0.661  Sum_probs=63.7

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++. .++++|++|++||++|+||.+|+.||.++...
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g   71 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAG   71 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccc
Confidence            3699999999999999999999999999999999863 36899999999999999999999999987643

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=1.4e-16  Score=165.96  Aligned_cols=69  Identities=36%  Similarity=0.563  Sum_probs=63.5

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  .+.++|++|++||++|+||.+|+.||+++...
T Consensus         2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~   72 (397)
T PRK14281          2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG   72 (397)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence            3699999999999999999999999999999999863  36789999999999999999999999987653

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=8.7e-17  Score=161.26  Aligned_cols=87  Identities=39%  Similarity=0.539  Sum_probs=73.1

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCCCC-CC
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA--GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGY-TG  124 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~--a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~g~-~g  124 (453)
                      ..|||+||||+.+++..+||+|||+.+++||||||+.+  +.+.|+.|.+||+||+|+.+|..||..+.......++ ..
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~~~~d~   83 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQGREDQ   83 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccchhhhhH
Confidence            67999999999999999999999999999999999843  7999999999999999999999999998876544433 23


Q ss_pred             CCCcccccCC
Q 012925          125 KPIYSVWFGS  134 (453)
Q Consensus       125 ~~~fs~ffG~  134 (453)
                      .++|..-||+
T Consensus        84 ~~~~r~~f~~   93 (296)
T KOG0691|consen   84 ADGFRKKFGS   93 (296)
T ss_pred             HHHHHHHhhh
Confidence            3344444554

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=2.3e-16  Score=163.64  Aligned_cols=70  Identities=33%  Similarity=0.491  Sum_probs=64.3

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++.  .+.++|++|++||++|+||.+|+.||+++...
T Consensus         3 ~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~   74 (386)
T PRK14289          3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG   74 (386)
T ss_pred             ccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence            35799999999999999999999999999999999963  36899999999999999999999999987643

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.63  E-value=1.4e-16  Score=177.27  Aligned_cols=74  Identities=26%  Similarity=0.341  Sum_probs=67.0

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCC
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGL  119 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~  119 (453)
                      .++.+||+||||+++||..+||+|||+||++||||+++.. +.++|+.|++||+|||||.+|+.||.+|..+...
T Consensus       570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~  644 (1136)
T PTZ00341        570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG  644 (1136)
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence            4678999999999999999999999999999999999743 6789999999999999999999999998765443

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.63  E-value=1.6e-16  Score=123.77  Aligned_cols=61  Identities=39%  Similarity=0.713  Sum_probs=57.3

Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhh
Q 012925           50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYD  110 (453)
Q Consensus        50 DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD  110 (453)
                      |||+||||+++++.++||++|+++++++|||+++..   +.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            689999999999999999999999999999997543   4789999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=3.8e-16  Score=161.37  Aligned_cols=67  Identities=34%  Similarity=0.569  Sum_probs=62.7

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      .|||+||||+++||.+|||+|||+|+++||||+++. .++++|++|++||++|+||.+|+.||+++..
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~   70 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD   70 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence            699999999999999999999999999999999863 3678999999999999999999999998764

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=4e-16  Score=162.09  Aligned_cols=76  Identities=32%  Similarity=0.506  Sum_probs=68.5

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCC
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-----GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLR  120 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-----a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~  120 (453)
                      ..+.|||.+|+|+++||.+|||+|||++++.|||||..++     ++++|+.|.+||+|||||++|.+||.+|.++....
T Consensus         6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~   85 (546)
T KOG0718|consen    6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTE   85 (546)
T ss_pred             cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccccc
Confidence            3456999999999999999999999999999999998633     58999999999999999999999999999877644


Q ss_pred             C
Q 012925          121 G  121 (453)
Q Consensus       121 g  121 (453)
                      |
T Consensus        86 g   86 (546)
T KOG0718|consen   86 G   86 (546)
T ss_pred             C
Confidence            3

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.61  E-value=5.2e-16  Score=156.43  Aligned_cols=67  Identities=34%  Similarity=0.543  Sum_probs=62.4

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      ..|||+||||+++++.+|||+|||+|+++||||+++. .+.++|++|++||++|+||.+|+.||.++.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            4699999999999999999999999999999999863 478999999999999999999999999864

>PHA03102 Small T antigen; Reviewed

Probab=99.56  E-value=1.5e-15  Score=139.52  Aligned_cols=86  Identities=21%  Similarity=0.264  Sum_probs=71.5

Q ss_pred             cccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCCCCCCCC
Q 012925           49 FDLYDLLGIDSSS--DQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGYTGKP  126 (453)
Q Consensus        49 ~DyYevLGV~~~A--s~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~g~~g~~  126 (453)
                      ..+|+||||+++|  |.++||+|||++++++|||+++  ..++|++||+||++|+|+.+|..||.++..........+..
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg--~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~~   82 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG--DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEEDVPSG   82 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc--hhHHHHHHHHHHHHHhhHHHhccccccCCcccccccccHHH
Confidence            4589999999999  9999999999999999999974  35799999999999999999999999886554333333555


Q ss_pred             CcccccCCcc
Q 012925          127 IYSVWFGSES  136 (453)
Q Consensus       127 ~fs~ffG~~~  136 (453)
                      .|.+.||++.
T Consensus        83 ~f~~~fg~~~   92 (153)
T PHA03102         83 YVGATFGDRV   92 (153)
T ss_pred             HhhhhcCCcc
Confidence            6677777654

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=3.3e-15  Score=144.13  Aligned_cols=69  Identities=32%  Similarity=0.561  Sum_probs=63.1

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA----GHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~----a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      ..|+|+||||.++|+..+||+|||+|++++|||++++.    ++++|+.|+.||+||+|.++|+.||..|.-.
T Consensus        13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            34899999999999999999999999999999999533    5899999999999999999999999987644

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.53  E-value=1.2e-14  Score=111.39  Aligned_cols=57  Identities=39%  Similarity=0.640  Sum_probs=52.4

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHhhcCCCCc
Q 012925           49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS---AGHDMAIILNEAYSVLSDPNS  105 (453)
Q Consensus        49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~---~a~~~f~~I~eAYevLsDp~k  105 (453)
                      .|||+||||+++++.++||++|+++++++|||+++.   .+.+.|..|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            489999999999999999999999999999999873   268899999999999999864

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.51  E-value=1.8e-14  Score=108.46  Aligned_cols=53  Identities=42%  Similarity=0.678  Sum_probs=50.0

Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCC
Q 012925           50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSD  102 (453)
Q Consensus        50 DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsD  102 (453)
                      |||+||||+++++.++||++||++++++|||+++.  .+.+.|+.|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            79999999999999999999999999999999974  468999999999999987

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=2.9e-14  Score=131.05  Aligned_cols=67  Identities=37%  Similarity=0.605  Sum_probs=62.0

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYDKEQ  113 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD~~g  113 (453)
                      ...|||+||||+++|+..|||+|||+++++||||+++..   +.+.|+.|++||++|+|+.+|..||..+
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            357899999999999999999999999999999999744   5699999999999999999999999864

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=3.7e-14  Score=135.63  Aligned_cols=72  Identities=31%  Similarity=0.538  Sum_probs=65.2

Q ss_pred             CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-c-hHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           45 LNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-A-GHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        45 s~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~-a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      .....|+||||||++++++.|||||||+|.+++||||+++ . .++.|..|++||+.|+|+..|+.|..+|..+
T Consensus        95 ~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD  168 (230)
T KOG0721|consen   95 ERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD  168 (230)
T ss_pred             HhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence            3667899999999999999999999999999999999876 3 4677889999999999999999999987643

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.47  E-value=2.4e-14  Score=156.57  Aligned_cols=68  Identities=40%  Similarity=0.628  Sum_probs=62.6

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      .|||+||||+++|+.++||+|||+|+++||||+++. .+.++|++|++||++|+||.+|..||.++..+
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG   70 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG   70 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence            589999999999999999999999999999999864 35778999999999999999999999987644

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.38  E-value=2.6e-13  Score=137.80  Aligned_cols=67  Identities=31%  Similarity=0.517  Sum_probs=61.8

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHhhcCCCCchhhhhHH
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-----GHDMAIILNEAYSVLSDPNSRLAYDKE  112 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-----a~~~f~~I~eAYevLsDp~kR~~YD~~  112 (453)
                      ....|||+||||.++|+..||-|||||+|.++|||...+.     ++.+|.-|..|-+||+||++|+.||..
T Consensus       391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG  462 (504)
T KOG0624|consen  391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG  462 (504)
T ss_pred             hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence            4568999999999999999999999999999999988644     578999999999999999999999975

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.35  E-value=9.2e-13  Score=123.06  Aligned_cols=65  Identities=29%  Similarity=0.508  Sum_probs=57.3

Q ss_pred             cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925           49 FDLYDLLGIDSS--SDQSQIKTAYRMLQKRCHPDIAGSA-------GHDMAIILNEAYSVLSDPNSRLAYDKEQ  113 (453)
Q Consensus        49 ~DyYevLGV~~~--As~~eIKkAYRklalk~HPDk~~~~-------a~~~f~~I~eAYevLsDp~kR~~YD~~g  113 (453)
                      .|||++|||+++  ++..+||++||++++++|||+....       +.+.|..||+||++|+||.+|..|+...
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l   74 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL   74 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence            489999999996  6889999999999999999997532       2467899999999999999999999654

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.34  E-value=9.8e-13  Score=122.41  Aligned_cols=65  Identities=31%  Similarity=0.394  Sum_probs=57.1

Q ss_pred             cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925           49 FDLYDLLGIDSS--SDQSQIKTAYRMLQKRCHPDIAGSAG-----HDMAIILNEAYSVLSDPNSRLAYDKEQ  113 (453)
Q Consensus        49 ~DyYevLGV~~~--As~~eIKkAYRklalk~HPDk~~~~a-----~~~f~~I~eAYevLsDp~kR~~YD~~g  113 (453)
                      .|||++|||+++  ++..+|+++||++++++|||++....     .+.+..||+||++|+||.+|..|+...
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l   73 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL   73 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            489999999997  78999999999999999999985332     235779999999999999999998764

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.30  E-value=2.9e-12  Score=120.31  Aligned_cols=67  Identities=33%  Similarity=0.504  Sum_probs=57.8

Q ss_pred             CccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc--h-----HHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925           47 MDFDLYDLLGIDSS--SDQSQIKTAYRMLQKRCHPDIAGSA--G-----HDMAIILNEAYSVLSDPNSRLAYDKEQ  113 (453)
Q Consensus        47 ~~~DyYevLGV~~~--As~~eIKkAYRklalk~HPDk~~~~--a-----~~~f~~I~eAYevLsDp~kR~~YD~~g  113 (453)
                      ...|||+||||++.  ++..+|+++||++++++|||++...  .     .+.+..||+||++|+||.+|..|+...
T Consensus         4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l   79 (176)
T PRK03578          4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHL   79 (176)
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Confidence            45799999999996  6889999999999999999998532  1     344689999999999999999999754

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.29  E-value=5.2e-12  Score=118.34  Aligned_cols=68  Identities=31%  Similarity=0.407  Sum_probs=59.8

Q ss_pred             CccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           47 MDFDLYDLLGIDSS--SDQSQIKTAYRMLQKRCHPDIAGSA-------GHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        47 ~~~DyYevLGV~~~--As~~eIKkAYRklalk~HPDk~~~~-------a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      ...|||++|||++.  .+..+|+++||++++++|||++...       +.+.|..||+||++|+||.+|..|+....
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~   78 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS   78 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            56799999999998  6789999999999999999997532       24678999999999999999999998653

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=3.5e-12  Score=132.93  Aligned_cols=71  Identities=28%  Similarity=0.389  Sum_probs=65.5

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhc
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG-SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTA  117 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~-~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~  117 (453)
                      ...|.|.+|||++++++++|||.|||+|...|||||. +.+.+.|+.|..||++|+|+++|+.||......+
T Consensus       233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ken  304 (490)
T KOG0720|consen  233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKEN  304 (490)
T ss_pred             cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence            3789999999999999999999999999999999997 4479999999999999999999999999876543

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=3.2e-12  Score=123.28  Aligned_cols=67  Identities=40%  Similarity=0.589  Sum_probs=62.1

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      ..|||+||||.++|+.+|||+|||++++++|||+++..   +..+|++|++||++|+|+.+|..||+++.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            47999999999999999999999999999999998755   45579999999999999999999999987

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=8.8e-12  Score=121.93  Aligned_cols=73  Identities=30%  Similarity=0.575  Sum_probs=65.8

Q ss_pred             CcccccccCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           36 NSVTCCKASLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-GHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        36 ~~~~C~~~ss~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      .-+.|      ...|.|+||||.++++..||++|||+|+++||||++++. +.+.|..|..||++|.|...|..||-...
T Consensus        26 egLYC------G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyald   99 (329)
T KOG0722|consen   26 EGLYC------GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALD   99 (329)
T ss_pred             hhhcc------cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence            34677      667999999999999999999999999999999999744 67899999999999999999999998654

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.17  E-value=2.7e-11  Score=106.63  Aligned_cols=54  Identities=28%  Similarity=0.391  Sum_probs=49.1

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcC
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLS  101 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLs  101 (453)
                      +...++|+||||++++|.+|||++||+|++++|||+.  .+++.|++|++||++|.
T Consensus        62 Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg--Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG--GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHh
Confidence            4557999999999999999999999999999999985  35678999999999995

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.6e-11  Score=127.02  Aligned_cols=69  Identities=35%  Similarity=0.557  Sum_probs=62.8

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      .+.+|||.||||.++++.++||+|||++++.+|||++...   ++.+|++|.+||.+|+||.+|..||....
T Consensus       370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d  441 (486)
T KOG0550|consen  370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD  441 (486)
T ss_pred             hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc
Confidence            3478999999999999999999999999999999998633   67899999999999999999999998543

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.05  E-value=1.2e-10  Score=116.03  Aligned_cols=57  Identities=32%  Similarity=0.486  Sum_probs=50.5

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------chHHHHHHHHHHHhhcCC
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS---------AGHDMAIILNEAYSVLSD  102 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~---------~a~~~f~~I~eAYevLsD  102 (453)
                      +.-.|+|+||||++++|.+|||++||+|+++||||+...         .++++|++|++||++|+.
T Consensus       197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            345799999999999999999999999999999999631         147899999999999975

>PHA02624 large T antigen; Provisional

Probab=99.02  E-value=2e-10  Score=124.82  Aligned_cols=60  Identities=27%  Similarity=0.378  Sum_probs=55.9

Q ss_pred             ccccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhh
Q 012925           48 DFDLYDLLGIDSSS--DQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAY  109 (453)
Q Consensus        48 ~~DyYevLGV~~~A--s~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~Y  109 (453)
                      ..++|++|||+++|  +.++||+|||++++++|||+++  ++++|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG--deekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG--DEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC--cHHHHHHHHHHHHHHhcHHHhhhc
Confidence            35899999999999  9999999999999999999964  468999999999999999999998

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.93  E-value=1.2e-09  Score=102.49  Aligned_cols=65  Identities=23%  Similarity=0.303  Sum_probs=56.8

Q ss_pred             cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925           49 FDLYDLLGIDSS--SDQSQIKTAYRMLQKRCHPDIAGSA-------GHDMAIILNEAYSVLSDPNSRLAYDKEQ  113 (453)
Q Consensus        49 ~DyYevLGV~~~--As~~eIKkAYRklalk~HPDk~~~~-------a~~~f~~I~eAYevLsDp~kR~~YD~~g  113 (453)
                      .|||++||+++.  .+..++++.||+|++++|||+....       +.+....||+||.+|+||.+|..|=...
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L   75 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIAL   75 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHh
Confidence            589999999998  8999999999999999999997533       2345679999999999999999997654

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.91  E-value=5.6e-10  Score=116.41  Aligned_cols=71  Identities=32%  Similarity=0.535  Sum_probs=64.0

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----hHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS---A----GHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~---~----a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      ....|+|||||++.+++..|||++||+|..++||||.++   .    -++.+++|++||+.|+|...|+.|-.+|..+
T Consensus        95 ~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd  172 (610)
T COG5407          95 RRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD  172 (610)
T ss_pred             HcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence            456799999999999999999999999999999999875   2    2788999999999999999999999987643

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.78  E-value=9.1e-09  Score=95.07  Aligned_cols=54  Identities=31%  Similarity=0.443  Sum_probs=46.9

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           61 SDQSQIKTAYRMLQKRCHPDIAGSA-------GHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        61 As~~eIKkAYRklalk~HPDk~~~~-------a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      .+..+|+++||++++++|||+....       +.+.+..||+||++|+||.+|..|+....
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~   63 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH   63 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            4678999999999999999986432       35788999999999999999999998754

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=1.2e-08  Score=97.07  Aligned_cols=67  Identities=25%  Similarity=0.388  Sum_probs=60.0

Q ss_pred             CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhh
Q 012925           44 SLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYD  110 (453)
Q Consensus        44 ss~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD  110 (453)
                      |++-+.|+|+||.|+|+.+.++||+.||+|++..|||||+++   +..+|-.|.+||..|-|+..|..-+
T Consensus        48 styfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~  117 (250)
T KOG1150|consen   48 STYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL  117 (250)
T ss_pred             ccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            356788999999999999999999999999999999999866   5788999999999999998766543

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=3.4e-08  Score=97.86  Aligned_cols=66  Identities=30%  Similarity=0.453  Sum_probs=58.2

Q ss_pred             CccccccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHHhhcCCCCchhhhhHH
Q 012925           47 MDFDLYDLLGIDSS---SDQSQIKTAYRMLQKRCHPDIAGSA----GHDMAIILNEAYSVLSDPNSRLAYDKE  112 (453)
Q Consensus        47 ~~~DyYevLGV~~~---As~~eIKkAYRklalk~HPDk~~~~----a~~~f~~I~eAYevLsDp~kR~~YD~~  112 (453)
                      ...|+|.+||++.-   ++..+|.++.++...+||||+...+    ..+.|+.|+.||+||+|+.+|..||..
T Consensus        41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~  113 (379)
T COG5269          41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN  113 (379)
T ss_pred             hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence            34799999999964   8899999999999999999997322    378999999999999999999999963

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=3.2e-06  Score=95.64  Aligned_cols=55  Identities=27%  Similarity=0.409  Sum_probs=47.7

Q ss_pred             CCccccccccCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcC
Q 012925           46 NMDFDLYDLLGIDSS----SDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLS  101 (453)
Q Consensus        46 ~~~~DyYevLGV~~~----As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLs  101 (453)
                      +...+-|+||.|+-+    -..+.||++|+|||.+|||||| |.+.++|..+|+||+.|+
T Consensus      1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN-PEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN-PEGREMFERVNKAYELLS 1336 (2235)
T ss_pred             cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHHHH
Confidence            445678999999865    2347899999999999999999 567899999999999998

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=5.4e-06  Score=80.92  Aligned_cols=54  Identities=26%  Similarity=0.589  Sum_probs=49.0

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHh-hcCC
Q 012925           49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-GHDMAIILNEAYS-VLSD  102 (453)
Q Consensus        49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-a~~~f~~I~eAYe-vLsD  102 (453)
                      +.||.||||..+|+.++++.+|.+|++++|||...+. ..+.|++|.+||. ||+.
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999998755 4789999999998 7763

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=8.7e-05  Score=64.62  Aligned_cols=53  Identities=34%  Similarity=0.417  Sum_probs=44.9

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCC
Q 012925           49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDP  103 (453)
Q Consensus        49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp  103 (453)
                      ..--.||||.++++.+.||+|+||..+..|||+.+.+  -...+||||+++|...
T Consensus        56 ~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP--YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   56 REAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP--YLASKINEAKDLLEGT  108 (112)
T ss_pred             HHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH--HHHHHHHHHHHHHhcc
Confidence            3444599999999999999999999999999998644  4556899999999754

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.001  Score=61.62  Aligned_cols=65  Identities=31%  Similarity=0.556  Sum_probs=53.0

Q ss_pred             ccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHhhcCCCCchhhhhHH
Q 012925           48 DFDLYDLLGIDSS--SDQSQIKTAYRMLQKRCHPDIAGSA-------GHDMAIILNEAYSVLSDPNSRLAYDKE  112 (453)
Q Consensus        48 ~~DyYevLGV~~~--As~~eIKkAYRklalk~HPDk~~~~-------a~~~f~~I~eAYevLsDp~kR~~YD~~  112 (453)
                      ..+||.++|....  ..++-++.-|.-..++.|||+....       +.+...+||+||.+|.||-+|+.|=..
T Consensus         7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk   80 (168)
T KOG3192|consen    7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLK   80 (168)
T ss_pred             HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            4689999986654  5677777799999999999995322       456678999999999999999999754

>COG1141 Fer Ferredoxin [Energy production and conversion]

Probab=96.67  E-value=0.00033  Score=56.60  Aligned_cols=55  Identities=25%  Similarity=0.453  Sum_probs=38.2

Q ss_pred             hcccceecccCcccccccCceeeeecccCccee------ecccCCC-CCCCcc-ccccce--EEEe
Q 012925          141 VFVDEVKCVGCLKCALFAGKTFAIESAYGRARV------VAQWADP-EHNPGS-YRNVPS--RLIV  196 (453)
Q Consensus       141 vFvDE~~CIGC~kCsl~a~~tFaie~~~GRARV------~~Q~~d~-E~~iq~-IqsCPv--Is~V  196 (453)
                      +.+|...||||+.|...++..|..+++ |.+++      ..+..+. ++.++. +.+||+  |+|.
T Consensus         3 v~vDrd~Cigcg~C~~~aPdvF~~~d~-G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~   67 (68)
T COG1141           3 VIVDRDTCIGCGACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVE   67 (68)
T ss_pred             EEechhhccccchhhhcCCcceeeCCC-cceEeccCccccccCChHHHHHHHHHHHhCCccceEec
Confidence            567888999999999999999998875 44432      1122111 233445 789999  8775

>PF13459 Fer4_15: 4Fe-4S single cluster domain

Probab=96.64  E-value=0.00036  Score=55.00  Aligned_cols=54  Identities=26%  Similarity=0.546  Sum_probs=38.8

Q ss_pred             hcccceecccCcccccccCceeeeecccCcceeecccCC--------CCCCCcc-ccccce--EEE
Q 012925          141 VFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWAD--------PEHNPGS-YRNVPS--RLI  195 (453)
Q Consensus       141 vFvDE~~CIGC~kCsl~a~~tFaie~~~GRARV~~Q~~d--------~E~~iq~-IqsCPv--Is~  195 (453)
                      |.+|...|+||+.|...++..|.+++. |.+++....++        ..+.++. ++.||+  |+|
T Consensus         1 V~vD~~~C~gcg~C~~~aP~vF~~d~~-g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v   65 (65)
T PF13459_consen    1 VWVDRDRCIGCGLCVELAPEVFELDDD-GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV   65 (65)
T ss_pred             CEEecccCcCccHHHhhCCccEEECCC-CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence            467888999999999999999999976 77766542111        1123444 678998  654

>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A

Probab=96.42  E-value=0.00037  Score=54.12  Aligned_cols=52  Identities=29%  Similarity=0.443  Sum_probs=35.0

Q ss_pred             ccceecccCcccccccCceeeeecccCcceeecccCCCC--CCCcc-ccccce--EE
Q 012925          143 VDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPE--HNPGS-YRNVPS--RL  194 (453)
Q Consensus       143 vDE~~CIGC~kCsl~a~~tFaie~~~GRARV~~Q~~d~E--~~iq~-IqsCPv--Is  194 (453)
                      ||...|++|+.|...+|..|.+++..|...+..|....+  +.... ++.||+  |+
T Consensus         1 VD~~~Ci~Cg~C~~~aP~vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~   57 (58)
T PF13370_consen    1 VDRDKCIGCGLCVEIAPDVFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIR   57 (58)
T ss_dssp             E-TTT--S-SHHHHH-TTTEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EE
T ss_pred             CChhhCcCCChHHHhCcHheeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcC
Confidence            455689999999999999999998878777766654432  23444 778998  54

...

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.58  E-value=0.0062  Score=57.12  Aligned_cols=53  Identities=34%  Similarity=0.475  Sum_probs=45.2

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---------hHHHHHHHHHHHhhc
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---------GHDMAIILNEAYSVL  100 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---------a~~~f~~I~eAYevL  100 (453)
                      ..|.|.+||+.......+|+++||++...+|||+....         ..+++++|++||+.+
T Consensus       112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            37899999999999999999999999999999985321         367788899998753

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=94.20  E-value=0.051  Score=58.48  Aligned_cols=30  Identities=27%  Similarity=0.345  Sum_probs=24.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 012925           56 GIDSSSDQSQIKTAYRMLQKRCHPDIAGSA   85 (453)
Q Consensus        56 GV~~~As~~eIKkAYRklalk~HPDk~~~~   85 (453)
                      ++..=.+.++|||+|||..|..||||.+..
T Consensus       395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~  424 (453)
T KOG0431|consen  395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQK  424 (453)
T ss_pred             chhhccCHHHHHHHHHhhhheeCcccccCC
Confidence            334446899999999999999999998644

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=93.78  E-value=0.026  Score=52.94  Aligned_cols=64  Identities=34%  Similarity=0.475  Sum_probs=50.0

Q ss_pred             ccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCch-------HHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925           50 DLYDLLGIDSSS--DQSQIKTAYRMLQKRCHPDIAGSAG-------HDMAIILNEAYSVLSDPNSRLAYDKEQ  113 (453)
Q Consensus        50 DyYevLGV~~~A--s~~eIKkAYRklalk~HPDk~~~~a-------~~~f~~I~eAYevLsDp~kR~~YD~~g  113 (453)
                      ||+..+|..+..  ..+.++..|+.+++.+|||+....+       -+.+..+|.||.+|.||-+|..|=...
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal   74 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLAL   74 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence            455666666654  4566899999999999999986332       346789999999999999999997643

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=89.82  E-value=0.55  Score=42.46  Aligned_cols=54  Identities=19%  Similarity=0.199  Sum_probs=37.7

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcC
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLS  101 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLs  101 (453)
                      ++-..-.+||||++..+.++|.+.|.+|-...+|++.+.  .-.-.+|..|.+.|.
T Consensus        55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS--fYLQSKV~rAKErl~  108 (127)
T PF03656_consen   55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS--FYLQSKVFRAKERLE  108 (127)
T ss_dssp             --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS---HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC--HHHHHHHHHHHHHHH
Confidence            444567789999999999999999999999999998642  233347888888885

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	453
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		2e-06
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		2e-05
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		2e-05
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		3e-05
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		4e-05
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		9e-05
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		1e-04
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-04
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		1e-04
3uo3_A	181	Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-		2e-04
3uo2_A	175	Jac1 Co-Chaperone From Saccharomyces Cerevisiae Len		2e-04
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		3e-04
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		3e-04
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-04
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		4e-04
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		6e-04
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		9e-04

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 47  MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAG-HDMAIILNEAYSVLSDPNS 105
           +DFD Y +LG+  ++ Q+ IK AY+ L +  HPD     G  D  I +++AY +LS+   
Sbjct: 15  LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEK 74
Query: 106 RLAYD 110
           R  YD
Sbjct: 75  RTNYD 79

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 52  YDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDK 111
           YD+LG+  ++ Q ++K AYR L  + HPD   + G     I ++AY VLSD   R  YDK
Sbjct: 9   YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQI-SQAYEVLSDAKKRELYDK 67

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
           D Y +LG+  + D   IKTAYR L ++ HPD++     +     L EA+ VL D   R  
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 109 YDK 111
           YD+
Sbjct: 89  YDQ 91

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
           D Y ++G+  + D   IKTAYR L ++ HPD++     +     + EA+ VLSD   R  
Sbjct: 6   DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 109 YDK 111
           YD+
Sbjct: 66  YDQ 68

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 51  LYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYD 110
           LYDLLG+  S+++ ++K  YR    + HPD           I +EA+ +L+DP  R  YD
Sbjct: 10  LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEI-SEAFEILNDPQKREIYD 68
Query: 111 K 111
           +
Sbjct: 69  Q 69

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAI-ILNEAYSVLSDPNSRLA 108
           D Y++LG+   +    +K AYR L  + HPD   + G   A   +  AY+VLS+P  R  
Sbjct: 8   DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 109 YDK 111
           YD+
Sbjct: 68  YDQ 70

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII--LNEAYSVLSDPNSRL 107
           D Y++LG+  ++++ +I+ AY+ L  + HPD         A    + EAY VL+D   R 
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 108 AYDK 111
           AYD+
Sbjct: 64  AYDQ 67

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII--LNEAYSVLSDPNSRL 107
           D Y++LG+  ++++ +I+ AY+ L  + HPD         A    + EAY VL+D   R 
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 108 AYDK 111
           AYD+
Sbjct: 64  AYDQ 67

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 52  YDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLAYD 110
           YD+LG+  S+ + QIK A+  L  + HPD   S   +     + EAY  LSD N R  YD
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69

>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182 Clone Length = 181

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 62  DQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAY 109
           DQS+++  YR LQ + HPD+A   G + +  LN+AY  L DP  R  Y
Sbjct: 31  DQSRLRKEYRQLQAQHHPDMA-QQGSEQSSTLNQAYHTLKDPLRRSQY 77

>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae Length = 175

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 62  DQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAY 109
           DQS+++  YR LQ + HPD+A   G + +  LN+AY  L DP  R  Y
Sbjct: 23  DQSRLRKEYRQLQAQHHPDMA-QQGSEQSSTLNQAYHTLKDPLRRSQY 69

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRL 107
           D Y +LG+  ++ Q +IK AY  L K+ HPD         +    L EAY VLSD   R 
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 108 AYD 110
            YD
Sbjct: 68  QYD 70

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMA---IILNEAYSVLSDPNSR 106
           + Y++LG+ +S+    IK AYR L  R HPD       +      +++EAY VLSD   R
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 107 LAYDK 111
             YD+
Sbjct: 70  SLYDR 74

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII--LNEAYSVLSDPNSRL 107
           D Y++LG+  ++++ +I+ AY+ L  + HPD         A    + EAY VL+D   R 
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 108 AYDK 111
           AYD+
Sbjct: 64  AYDQ 67

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
           D Y  LG+   +   +IK AYR    R HPD     G +     + EAY VLSDP  R  
Sbjct: 4   DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 109 YDKEQAKTAGLRG 121
           +D+   +  GL+G
Sbjct: 64  FDRYGEE--GLKG 74

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 48  DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPD--IAGSAGHDMAIILNEAYSVLSDPNS 105
           D + Y LLG+  ++   +I+ A++ L  + HPD        H   + +N AY VL D + 
Sbjct: 20  DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79
Query: 106 RLAYDK 111
           R  YDK
Sbjct: 80  RKKYDK 85

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 52  YDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDK 111
           YD+LG+   +  +++K AYR +  + HPD     G +    +++AY VLSD   R  YD+
Sbjct: 11  YDVLGVKPDASDNELKKAYRKMALKFHPD-KNPDGAEQFKQISQAYEVLSDEKKRQIYDQ 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	453
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	9e-16
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	5e-15
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	1e-14
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-14
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	8e-14
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	2e-13
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-13
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	2e-13
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	2e-13
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	2e-13
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	3e-13
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	3e-13
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	6e-13
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	1e-12
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	1e-12
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	2e-12
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-12
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	3e-12
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	4e-12
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	5e-12
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	8e-12
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	1e-11
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	1e-11
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	3e-11
1f2g_A	58	Ferredoxin II; electron transport, FDII desulfovib	3e-11
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	4e-11
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	5e-11
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	9e-11
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	4e-10
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-09
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	6e-09
2guz_A	71	Mitochondrial import inner membrane translocase su	2e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-08
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	3e-06
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	3e-06
1rof_A	60	Ferredoxin; electron transport, iron-sulfur; NMR {	3e-04
1sj1_A	66	Ferredoxin; thermostability, iron-sulfur cluster,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 72.2 bits (177), Expect = 9e-16
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 50  DLYDLLGI--DSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRL 107
            L DLLG+   +  +   ++ AY    K  HPD  G       +  N  Y  + D     
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKM--NTLYKKMEDGVKYA 66

Query: 108 AYDK--EQAKTAGLRGYTGKPIYSVWFGS 134
                        +  Y G   +  W+ +
Sbjct: 67  HQPDFGGFWDATEIPTY-GTDEWEQWWNA 94

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A Length = 64

 Score = 68.6 bits (168), Expect = 5e-15
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 139 RAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEH 182
           R  +VD+ +C+ C  C   A   FA++    +A V       + 
Sbjct: 2   RKFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQE 45

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1 Length = 59

 Score = 67.4 bits (165), Expect = 1e-14
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 140 AVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPE 181
            + +D  +C+GC  C     + FA+     +A V A  +  E
Sbjct: 1   TIVIDHEECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAE 42

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 70.3 bits (172), Expect = 2e-14
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 50  DLYDLLGI--DSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRL 107
            L DLLG+   +  +   ++ AY    K  HPD  G       +  N  Y  + D     
Sbjct: 12  QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKM--NTLYKKMEDGVKYA 69

Query: 108 AYDK--EQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCAL 156
                        +   +  P     +  +  +    +    C  CL C L
Sbjct: 70  HQPDFGGFWDATEVFASSLNPGVDAIYCKQWPECVKKMS-TNC-ICLLCLL 118

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 65.9 bits (161), Expect = 8e-14
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 35  SNSVTCCKASLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAG-HDMAIIL 93
           S S    ++   +DFD Y +LG+  ++ Q+ IK AY+ L +  HPD     G  D  I +
Sbjct: 3   SGSSGILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQI 62

Query: 94  NEAYSVLSDPNSRLAYDKEQAKTAGLRG 121
           ++AY +LS+   R  YD     +    G
Sbjct: 63  SKAYEILSNEEKRTNYD--HYGSGPSSG 88

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 24/132 (18%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPD--------IAGSAGHDMAIILNEAYSVLS 101
           D Y +LG D S++ S +K  Y+ L    HPD                  I +++A+ +L 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70

Query: 102 DPNSRLAYDKEQAKTAGLRGYTGKPIYSV--WFGSESEQRAVF--------------VDE 145
           +  ++  YD ++ +              +     +E +                    +E
Sbjct: 71  NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEE 130

Query: 146 VKCVGCLKCALF 157
           V  + C  C+L 
Sbjct: 131 VSLISCDTCSLI 142

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 64.5 bits (158), Expect = 2e-13
 Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 47  MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAG-HDMAIILNEAYSVLSDPNS 105
           M  D Y  LG+   +   +IK AYR    R HPD     G  +    + EAY VLSDP  
Sbjct: 1   MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60

Query: 106 RLAYDKEQAKTAGLRG 121
           R  +D  +    GL+G
Sbjct: 61  REIFD--RYGEEGLKG 74

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 67.3 bits (164), Expect = 2e-13
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 50  DLYDLLGIDSSS-------DQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSD 102
             Y+L              DQS+++  YR LQ + HPD+A       + + N+AY  L D
Sbjct: 12  TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTL-NQAYHTLKD 70

Query: 103 PNSRLAYDKEQAKTAGLRG 121
           P  R  Y  +  +   L  
Sbjct: 71  PLRRSQYMLKLLRNIDLTQ 89

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAY 109
            LYDLLG+  S+++ ++K  YR    + HPD           I +EA+ +L+DP  R  Y
Sbjct: 9   KLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEI-SEAFEILNDPQKREIY 67

Query: 110 DK 111
           D+
Sbjct: 68  DQ 69

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 65.2 bits (159), Expect = 3e-13
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI--AGSAGHDMAIILNEAYSVLSDPNSRL 107
           D Y LLG D  S   QI   +++    CHPD         +    L +A  +L++  SR 
Sbjct: 21  DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80

Query: 108 AYDK 111
            YD 
Sbjct: 81  RYDH 84

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAY 109
             YD+LG+   +  +++K AYR +  + HPD           I ++AY VLSD   R  Y
Sbjct: 9   GYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQI-SQAYEVLSDEKKRQIY 67

Query: 110 DK 111
           D+
Sbjct: 68  DQ 69

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 65.8 bits (160), Expect = 6e-13
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 47  MDFDLYDLLGIDSSS--DQSQIKTAYRMLQKRCHPDIAGSAG-------HDMAIILNEAY 97
           MD+  + L G+ +    D   +   ++ LQ++ HPD   S            +  +N+A+
Sbjct: 1   MDY--FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAW 58

Query: 98  SVLSDPNSRLAYDKEQ 113
             L  P  R  Y    
Sbjct: 59  QTLRHPLMRAEYLLSL 74

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII----LNEAYSVLSDPNS 105
           D Y++LG+  ++++ +I+ AY+ L  + HPD   + G   A      + EAY VL+D   
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDR--NQGDKEAEAKFKEIKEAYEVLTDSQK 61

Query: 106 RLAYD 110
           R AYD
Sbjct: 62  RAAYD 66

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
           D Y++LG+   +    +K AYR L  + HPD   + G   A   +  AY+VLS+P  R  
Sbjct: 8   DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67

Query: 109 YDKEQAKTAGLRG 121
           YD  Q  +    G
Sbjct: 68  YD--QFGSGPSSG 78

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI--AGSAGHDMAIILNEAYSVLSDPNSRL 107
            LYDLLG+ S++ Q+QIK AY       HPD     +   +    +++AY VL     R 
Sbjct: 18  ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77

Query: 108 AYDK-----EQAKTAGLRGYTG 124
            YD+     E  +  G    +G
Sbjct: 78  KYDRGLLSDEDLRGPGSGPSSG 99

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI--AGSAGHDMAIILNEAYSVLSDPNSRL 107
           + Y LLG+  ++   +I+ A++ L  + HPD        H   + +N AY VL D + R 
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62

Query: 108 AYDK 111
            YDK
Sbjct: 63  KYDK 66

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 10/70 (14%)

Query: 47  MDF-DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMA-----IILNEAYSVL 100
           M+  D Y +LG+  + D   IKTAYR L ++ HPD+  S  +D       +   EA+ VL
Sbjct: 25  MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDV--SKENDAEAKFKDL--AEAWEVL 80

Query: 101 SDPNSRLAYD 110
            D   R  YD
Sbjct: 81  KDEQRRAEYD 90

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 61.2 bits (149), Expect = 4e-12
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAI-ILNEAYSVLSDPNSRLA 108
             YD+LG+  S+ + QIK A+  L  + HPD   S   +     + EAY  LSD N R  
Sbjct: 8   SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKE 67

Query: 109 YDK 111
           YD 
Sbjct: 68  YDT 70

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 61.3 bits (149), Expect = 5e-12
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 50  DLYDLLGID-SSSDQSQIKTAYRMLQKRCHPDI-AGSAGHDMAI----ILNEAYSVLSDP 103
           + YD+L ++    D+ ++  AYR L ++ HPD         +A     ++  AY  L D 
Sbjct: 16  NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75

Query: 104 NSRLAYD 110
            ++  YD
Sbjct: 76  EAKTNYD 82

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 60.0 bits (146), Expect = 8e-12
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI--AGSAGHDMAIILNEAYSVLSDPNSRL 107
           D Y +LG+  ++ Q +IK AY  L K+ HPD         +    L EAY VLSD   R 
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67

Query: 108 AYD 110
            YD
Sbjct: 68  QYD 70

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI---AGSAGHDMAIILNEAYSVLSDPNSR 106
             Y++L +  S+    IK AYR    + HPD               + EAY VLSD + R
Sbjct: 3   SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62

Query: 107 LAYDKEQAKTAGLRGYTGKP 126
             YD  +    GL G    P
Sbjct: 63  EIYD--RYGREGLTGTGTGP 80

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAI-ILNEAYSVLSDPNSRLA 108
           D +D+LG+   + + ++  AYR L    HPD   + G + A   +  A + L        
Sbjct: 28  DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87

Query: 109 YD 110
             
Sbjct: 88  SS 89

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII----LNEAYSVLSDPNS 105
            LY +LG+D ++    IK +YR L  + HPD   +  +  A      +N A+++L+D   
Sbjct: 18  SLYHVLGLDKNATSDDIKKSYRKLALKYHPDK--NPDNPEAADKFKEINNAHAILTDATK 75

Query: 106 RLAYDKEQAKTAGLRGYTG 124
           R  YD  +  + GL     
Sbjct: 76  RNIYD--KYGSLGLYVAEQ 92

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A Length = 58

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 141 VFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPE 181
           + V++  C+ C  C       F +     +A V+   +D +
Sbjct: 2   IEVND-DCMACEACVEICPDVFEMNEEGDKAVVINPDSDLD 41

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 58.6 bits (142), Expect = 4e-11
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPD--------IAGSAGHDMAIILNEAYSVLS 101
           D Y +LG D S++ S +K  Y+ L    HPD                  I +++A+ +L 
Sbjct: 17  DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

Query: 102 DPNSRLAYDKEQAKTAGLRG 121
           +  ++  YD    ++    G
Sbjct: 77  NEETKKKYD--LQRSGPSSG 94

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 57.6 bits (140), Expect = 5e-11
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI---AGSAGHDMAIILNEAYSVLSDPNSR 106
           D Y++L +   +    IK AYR L  + HPD               + EAY VLSD   R
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69

Query: 107 LAYDKEQAKTAGLRG 121
             YD  +  +    G
Sbjct: 70  DIYD--RYGSGPSSG 82

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 57.3 bits (139), Expect = 9e-11
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI---AGSAGHDMAIILNEAYSVLSDPNSR 106
           + Y++LG+ +S+    IK AYR L  R HPD              +++EAY VLSD   R
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69

Query: 107 LAYDKEQAKTAGLRGYTGKP 126
             YD  +A     R   G  
Sbjct: 70  SLYD--RAGCDSWRAGGGAS 87

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 55.0 bits (132), Expect = 4e-10
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 50  DLYDLLGI--DSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRL 107
            L +LL +      D  +++ AY+      HPD  GS    +   LN  +         L
Sbjct: 12  RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH--ALMQELNSLWGTFKTEVYNL 69

Query: 108 AYD 110
             +
Sbjct: 70  RMN 72

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 48  DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNS 105
           D + Y LLG+  ++   +I+ A++ L  + HPD   +    H   + +N AY VL D + 
Sbjct: 20  DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79

Query: 106 RLAYDKE 112
           R  YDK 
Sbjct: 80  RKKYDKY 86

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 55.1 bits (132), Expect = 6e-09
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 41  CKASLNMDF--DLYDLLGIDSSS--DQSQIKTAYRMLQKRCHPDIAGSAG-------HDM 89
           C+A    D   D + L+  + S   D ++++  Y+ LQ+  HPD                
Sbjct: 33  CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH 92

Query: 90  AIILNEAYSVLSDPNSRLAYDKEQ 113
           + ++N+AY  L  P SR  Y  + 
Sbjct: 93  STLVNDAYKTLLAPLSRGLYLLKL 116

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 52  YDLLGID-SSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSR 106
             +L +  ++  + ++K  +R +    HPD  GS    +A  +NEA   L      
Sbjct: 17  LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP--FLATKINEAKDFLEKRGIS 70

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIA------GSAGHDMAIILNEAYSVLSDP 103
           D Y +LG+  ++ + +I  AYR L  + HPD          A      I   A  VLSDP
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDI-AAAKEVLSDP 441

Query: 104 NSRLAYD 110
             R  +D
Sbjct: 442 EMRKKFD 448

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 46.8 bits (110), Expect = 3e-06
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 52  YDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMA-----IILNEAYSVLSDPNSR 106
           +  +G+       Q+K  YR      HPD A    ++       + LN+A+S   +   +
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179

Query: 107 LAY 109
             Y
Sbjct: 180 PLY 182

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII----LNEAYSVLSDPNS 105
           ++  ++       +S+ K   R L  + HPD      HD+A      L    + L     
Sbjct: 17  EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPE-NHDIANEVFKHLQNEINRLEK--- 72

Query: 106 RLAYDKEQAKTAGLRG 121
           +   D  Q      R 
Sbjct: 73  QAFLD--QNADRASRR 86

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A Length = 60

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 141 VFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPE 181
           V VD   C+GC  C       F +    G+A+V+    D  
Sbjct: 3   VRVDADACIGCGVCENLCPDVFQLGDD-GKAKVLQPETDLP 42

>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A Length = 66

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 141 VFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEH 182
           V VD+  C+G   CA      F +    G+A+   +  + E 
Sbjct: 4   VSVDQDTCIGDAICASLCPDVFEMNDE-GKAQPKVEVIEDEE 44

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 68/476 (14%), Positives = 132/476 (27%), Gaps = 150/476 (31%)

Query: 46  NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNS 105
           +MDF+              + +  Y+ +              D   + +   S+LS    
Sbjct: 6   HMDFET------------GEHQYQYKDILSVFEDAFV--DNFDCKDVQDMPKSILSKEEI 51

Query: 106 RLAYDKEQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVDEVKCVGCLKCALFAGKTFAIE 165
                 + A +  LR      ++      + E    FV+EV                 + 
Sbjct: 52  DHIIMSKDAVSGTLR------LFWTLLSKQEEMVQKFVEEV-----------------LR 88

Query: 166 SAYG--RARVVAQWADPEHNPGSYRNVPSRLI----------VERSDL-AAL-EYLMAKQ 211
             Y    + +  +   P      Y     RL           V R      L + L+  +
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 212 PRGTVRV----GAGNT--AGARVSN----------IF-VDVKKFQTQYED-AMKKAAGKD 253
           P   V +    G+G T  A     +          IF +++K   +      M +     
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 254 TDTNWEARLSAIQAIRSISNWLYWQLPN---AESYQN-L-----TRSKQKLKEPNIK-KL 303
            D NW +R      I+   + +  +L     ++ Y+N L      ++ +     N+  K+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 304 L----DAAAARKQASQSTKSVPSN----CMHHDE-------YWSPSTHALPDTTQSNRSF 348
           L            ++ +T  +  +     +  DE       Y       LP         
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP--------- 319

Query: 349 KAASESPYNKEWKKANDRNYSVREENRRSPIALGIPIVTAAIAAAMVRM-----QVDQGV 403
                                 RE    +P  L I      IA ++              
Sbjct: 320 ----------------------REVLTTNPRRLSI------IAESIRDGLATWDNWKHVN 351

Query: 404 SDGLKEHVGGSLAL--------------IIVNSSWLQVMLAGITWYFIGAAVVELI 445
            D L   +  SL +              +   S+ +  +L  + W+ +  + V ++
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	453
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.78
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.78
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.77
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.77
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.76
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.76
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.75
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.75
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.75
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.75
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.75
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.74
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.73
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.73
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.73
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.73
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.67
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.67
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.67
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.67
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.65
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.63
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.6
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.6
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.58
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.57
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.57
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.53
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.52
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.51
2guz_A	71	Mitochondrial import inner membrane translocase su	99.5
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.5
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.49
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.88
2guz_B	65	Mitochondrial import inner membrane translocase su	98.59
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	88.75
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	88.55
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	84.99
1iqz_A	81	Ferredoxin; iron-sulfer protein, ultlahigh resolut	84.55

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.78  E-value=4.8e-20  Score=166.81  Aligned_cols=115  Identities=23%  Similarity=0.352  Sum_probs=84.3

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhc
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA--------GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTA  117 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~--------a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~  117 (453)
                      +...|||+||||+++++.++||+|||+|++++|||+++..        +.+.|+.|++||++|+||.+|+.||..+....
T Consensus         7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~   86 (155)
T 2l6l_A            7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDD   86 (155)
T ss_dssp             CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHH
T ss_pred             CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhh
Confidence            4567999999999999999999999999999999998744        35899999999999999999999998764321


Q ss_pred             --CCC---------CC-----CCCCCcccccCCcchhhhhcccce---ecccCcccccccCceee
Q 012925          118 --GLR---------GY-----TGKPIYSVWFGSESEQRAVFVDEV---KCVGCLKCALFAGKTFA  163 (453)
Q Consensus       118 --~~~---------g~-----~g~~~fs~ffG~~~~~~~vFvDE~---~CIGC~kCsl~a~~tFa  163 (453)
                        ...         .+     .....+.+.||+.+.   +..++.   ..++|..|+++..+.|+
T Consensus        87 ~~~~~~~~~~~~~~~m~~~e~~~~f~~~CrCG~~f~---i~~~~l~~~~~v~C~sCSl~~~v~~~  148 (155)
T 2l6l_A           87 LRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYS---VSKDEAEEVSLISCDTCSLIIELLHY  148 (155)
T ss_dssp             HHTTCSSSEEEETTTSEEETTTTEEEEECSSSCEEE---EETTHHHHCCEEECSSSSCEEEEECC
T ss_pred             ccccccccceeeHHHhccccCCcEEEEcCCCCCeEE---ecHHHhCCCCEEECCCCceEEEEEEc
Confidence              100         00     001123445665432   222222   57889999888777665

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.78  E-value=1.3e-19  Score=145.66  Aligned_cols=70  Identities=33%  Similarity=0.504  Sum_probs=64.3

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhhhc
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTA  117 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~  117 (453)
                      ..|||+||||+++++.++||+|||+|++++|||+++. .+.+.|+.|++||++|+||.+|..||..+..+.
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   72 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence            4689999999999999999999999999999999874 468999999999999999999999999876543

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=2.4e-19  Score=145.64  Aligned_cols=70  Identities=31%  Similarity=0.440  Sum_probs=63.7

Q ss_pred             CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           45 LNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        45 s~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      +....|||+||||+++++.++||+|||++++++|||+++..   +.+.|+.|++||++|+||.+|..||..+.
T Consensus         5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   77 (82)
T 2ej7_A            5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS   77 (82)
T ss_dssp             CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred             CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            34567999999999999999999999999999999998753   57899999999999999999999998764

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.8e-19  Score=145.36  Aligned_cols=70  Identities=36%  Similarity=0.506  Sum_probs=64.2

Q ss_pred             CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           45 LNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG--SAGHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        45 s~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~--~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      +....|||+||||+++++.++||++||+|++++|||+++  +.+.+.|+.|++||++|+||.+|..||..+.
T Consensus         3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   74 (79)
T 2dn9_A            3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS   74 (79)
T ss_dssp             SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence            355789999999999999999999999999999999986  3468999999999999999999999998764

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=4.5e-19  Score=146.42  Aligned_cols=74  Identities=32%  Similarity=0.433  Sum_probs=66.5

Q ss_pred             CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcC
Q 012925           45 LNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAG  118 (453)
Q Consensus        45 s~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~  118 (453)
                      +....|||+||||+++++.++||+|||+|++++|||+++.. +.+.|++|++||++|+||.+|..||..+.....
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   77 (88)
T 2ctr_A            3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFT   77 (88)
T ss_dssp             SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHT
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            34567999999999999999999999999999999999743 588999999999999999999999998765543

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=2.1e-19  Score=144.81  Aligned_cols=70  Identities=30%  Similarity=0.537  Sum_probs=64.2

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      ....|||+||||+++++.++||+|||++++++|||+++. .+.+.|+.|++||++|+||.+|..||..+..
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   74 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG   74 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            456799999999999999999999999999999999864 3688999999999999999999999997653

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.75  E-value=3.8e-19  Score=141.72  Aligned_cols=67  Identities=31%  Similarity=0.581  Sum_probs=61.5

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      ...|||+||||+++++.++||++||++++++|||+++. ..+.|+.|++||++|+||.+|..||..|.
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~-~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD-GAEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT-CHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC-HHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            45799999999999999999999999999999999854 46899999999999999999999999764

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.75  E-value=3.1e-19  Score=151.43  Aligned_cols=70  Identities=30%  Similarity=0.543  Sum_probs=64.2

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhc
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG--SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTA  117 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~--~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~  117 (453)
                      ..|||+||||+++++.++||+|||+|++++|||+++  +.+.+.|++|++||++|+||.+|+.||..+....
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhh
Confidence            468999999999999999999999999999999986  3468899999999999999999999999886543

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.75  E-value=3e-19  Score=148.43  Aligned_cols=69  Identities=26%  Similarity=0.491  Sum_probs=63.2

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------chHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--------AGHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--------~a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      +...|||+||||+++++.++||+|||+|++++|||+++.        .+.+.|++|++||++|+||.+|+.||..+.
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            556899999999999999999999999999999999862        257899999999999999999999998764

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.75  E-value=5.8e-19  Score=145.72  Aligned_cols=70  Identities=34%  Similarity=0.628  Sum_probs=64.6

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      ....|||+||||+++++.++||+|||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+..
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   84 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG   84 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence            457899999999999999999999999999999999874 4689999999999999999999999998753

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=6.6e-19  Score=146.26  Aligned_cols=71  Identities=34%  Similarity=0.548  Sum_probs=64.4

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      ....|||+||||+++++.++||++||+|++++|||+++..   +++.|++|++||++|+||.+|..||..+...
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   79 (92)
T 2dmx_A            6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDS   79 (92)
T ss_dssp             CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            4457999999999999999999999999999999998743   5789999999999999999999999987543

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=5.7e-19  Score=148.90  Aligned_cols=70  Identities=33%  Similarity=0.423  Sum_probs=64.2

Q ss_pred             CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           45 LNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        45 s~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      .+...|||+||||+++++.++||+|||+|++++|||+++.  .+.+.|++|++||++|+||.+|+.||..+.
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   84 (99)
T 2yua_A           13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLL   84 (99)
T ss_dssp             SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred             CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            4667899999999999999999999999999999999853  368899999999999999999999998643

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.73  E-value=1.4e-18  Score=147.02  Aligned_cols=69  Identities=30%  Similarity=0.427  Sum_probs=62.6

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhc
Q 012925           49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTA  117 (453)
Q Consensus        49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~  117 (453)
                      .|||+||||+++++.++||+|||++++++|||+++..   +.+.|+.|++||++|+||.+|..||..+....
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~   73 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGL   73 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC--
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            5899999999999999999999999999999998743   57899999999999999999999999886543

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.73  E-value=4.2e-19  Score=152.40  Aligned_cols=71  Identities=31%  Similarity=0.468  Sum_probs=64.9

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      ....|||+||||+++++.++||+|||+|++++|||+++.  .+.+.|++|++||++|+||.+|+.||.++..+
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   86 (109)
T 2ctw_A           14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLG   86 (109)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccc
Confidence            467899999999999999999999999999999999964  35889999999999999999999999987654

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.7e-18  Score=144.15  Aligned_cols=70  Identities=31%  Similarity=0.574  Sum_probs=63.9

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhc
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTA  117 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~  117 (453)
                      ...|||+||||+++++.++||+|||+|++++|||+++. ..+.|++|++||++|+||.+|+.||..+....
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   75 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG-DTEKFKEISEAFEILNDPQKREIYDQYGLEAA   75 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTC-CHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHH
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHh
Confidence            45799999999999999999999999999999999854 46799999999999999999999999876543

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=1.9e-18  Score=148.94  Aligned_cols=71  Identities=28%  Similarity=0.409  Sum_probs=65.3

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG--SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT  116 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~--~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~  116 (453)
                      ....|||+||||+++++.++||+|||+|++++|||+++  +.+.+.|++|++||++|+||.+|+.||..+...
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~   89 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQ   89 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhc
Confidence            45689999999999999999999999999999999986  336899999999999999999999999998754

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.67  E-value=1.4e-17  Score=142.52  Aligned_cols=68  Identities=25%  Similarity=0.440  Sum_probs=63.1

Q ss_pred             CccccccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           47 MDFDLYDLLGIDSSS-DQSQIKTAYRMLQKRCHPDIAGS-----AGHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        47 ~~~DyYevLGV~~~A-s~~eIKkAYRklalk~HPDk~~~-----~a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      ...|||+||||++++ +.++||+|||+|++++|||+++.     .+.+.|++|++||++|+||.+|+.||..+.
T Consensus        13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            467999999999999 99999999999999999999864     257899999999999999999999999875

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.67  E-value=4e-18  Score=172.08  Aligned_cols=72  Identities=33%  Similarity=0.493  Sum_probs=0.0

Q ss_pred             cCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           43 ASLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        43 ~ss~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      .+.+...|||+||||+++|+.+|||+|||+|+++||||+++. .+.++|++|++||++|+||.+|+.||+++.
T Consensus        22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   94 (329)
T 3lz8_A           22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ   94 (329)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence            334666899999999999999999999999999999999864 468899999999999999999999999743

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.67  E-value=3.8e-17  Score=155.31  Aligned_cols=80  Identities=24%  Similarity=0.414  Sum_probs=67.4

Q ss_pred             CCCcccccccCC----CCccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHhhc
Q 012925           34 NSNSVTCCKASL----NMDFDLYDLLGIDSS--SDQSQIKTAYRMLQKRCHPDIAGSA-------GHDMAIILNEAYSVL  100 (453)
Q Consensus        34 ~~~~~~C~~~ss----~~~~DyYevLGV~~~--As~~eIKkAYRklalk~HPDk~~~~-------a~~~f~~I~eAYevL  100 (453)
                      ....+.|-+|.+    ....|||+||||+++  ++.++||++||+|++++|||+++..       +.+.|+.||+||+||
T Consensus        24 ~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL  103 (207)
T 3bvo_A           24 REDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTL  103 (207)
T ss_dssp             CSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            345677855653    236899999999987  7999999999999999999998643       256899999999999


Q ss_pred             CCCCchhhhhHHH
Q 012925          101 SDPNSRLAYDKEQ  113 (453)
Q Consensus       101 sDp~kR~~YD~~g  113 (453)
                      +||.+|..||...
T Consensus       104 sdp~~R~~Yd~~l  116 (207)
T 3bvo_A          104 LAPLSRGLYLLKL  116 (207)
T ss_dssp             HSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999864

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.67  E-value=2.7e-17  Score=152.64  Aligned_cols=69  Identities=32%  Similarity=0.542  Sum_probs=63.7

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhc
Q 012925           49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG--SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTA  117 (453)
Q Consensus        49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~--~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~  117 (453)
                      .|||+||||+++++.++||+|||+|++++|||+++  +.+.++|+.|++||++|+||.+|+.||.+|....
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~   72 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL   72 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccc
Confidence            58999999999999999999999999999999985  3468899999999999999999999999986544

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=4.5e-17  Score=135.28  Aligned_cols=62  Identities=23%  Similarity=0.309  Sum_probs=57.3

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhh
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLA  108 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~  108 (453)
                      ...|||+||||+++++.++||+|||+|+++||||+++. .+.++|++|++||++|+||.+|..
T Consensus        25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            45899999999999999999999999999999999964 468999999999999999998874

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.63  E-value=1.9e-17  Score=153.64  Aligned_cols=65  Identities=25%  Similarity=0.325  Sum_probs=58.0

Q ss_pred             ccccccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           48 DFDLYDLLGIDSSSD--QSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        48 ~~DyYevLGV~~~As--~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      ..|||+||||+++|+  .++||+|||++++++|||+++.  +++|++|++||++|+||.+|+.||++|.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~--~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C--CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            468999999999998  6999999999999999999865  4799999999999999999999999885

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.60  E-value=3e-17  Score=142.55  Aligned_cols=64  Identities=25%  Similarity=0.332  Sum_probs=59.5

Q ss_pred             ccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925           48 DFDLYDLLGIDSSSDQ--SQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQ  113 (453)
Q Consensus        48 ~~DyYevLGV~~~As~--~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~YD~~g  113 (453)
                      ..|||+||||+++++.  ++||+|||+|++++|||+++.  .++|++|++||+||+||.+|+.||.++
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~--~e~f~~I~~AYevL~d~~~R~~~~~~~   72 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDFG   72 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc--HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence            4689999999999999  999999999999999999865  579999999999999999999999754

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.58  E-value=4.8e-16  Score=143.52  Aligned_cols=66  Identities=24%  Similarity=0.432  Sum_probs=59.9

Q ss_pred             cccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           49 FDLYDLLGIDSSS--DQSQIKTAYRMLQKRCHPDIAGSA-------GHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        49 ~DyYevLGV~~~A--s~~eIKkAYRklalk~HPDk~~~~-------a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      .|||+||||++++  +.++||++||+|+++||||+++..       +.+.|+.||+||+||+||.+|..||..+.
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~   75 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence            3899999999999  999999999999999999998643       24689999999999999999999998753

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.57  E-value=4.1e-16  Score=126.80  Aligned_cols=61  Identities=23%  Similarity=0.365  Sum_probs=55.6

Q ss_pred             ccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhhh
Q 012925           48 DFDLYDLLGIDSS--SDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYD  110 (453)
Q Consensus        48 ~~DyYevLGV~~~--As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~YD  110 (453)
                      ..++|+||||+++  ++.++||+|||+|++++|||+++  +.++|++|++||++|+|+.+|..++
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~--~~~~f~~i~~AYe~L~~~~~r~~~~   72 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG--SHALMQELNSLWGTFKTEVYNLRMN   72 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC--CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC--CHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            3579999999999  99999999999999999999975  3689999999999999999888743

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.57  E-value=4.2e-16  Score=129.53  Aligned_cols=64  Identities=14%  Similarity=0.079  Sum_probs=57.2

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhh
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAY  109 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~Y  109 (453)
                      ....|+|+||||+++++.+|||+|||+|+++||||+++..   ++++|++|++||++|+|...|..+
T Consensus        13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~   79 (88)
T 1iur_A           13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQN   79 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            4457899999999999999999999999999999999754   589999999999999998777443

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.53  E-value=2.2e-15  Score=140.41  Aligned_cols=67  Identities=34%  Similarity=0.587  Sum_probs=60.6

Q ss_pred             CCcccccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925           46 NMDFDLYDLL------GIDS-SSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQ  113 (453)
Q Consensus        46 ~~~~DyYevL------GV~~-~As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~YD~~g  113 (453)
                      ....|||+||      |+++ +++.++||++||+|++++|||+++. +.+.|+.|++||+||+||.+|..||..+
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            3457999999      4665 8999999999999999999999965 6789999999999999999999999976

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.52  E-value=2e-15  Score=140.90  Aligned_cols=61  Identities=23%  Similarity=0.344  Sum_probs=57.2

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHhhcCCCCchhhh
Q 012925           49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-----GHDMAIILNEAYSVLSDPNSRLAY  109 (453)
Q Consensus        49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-----a~~~f~~I~eAYevLsDp~kR~~Y  109 (453)
                      .|||+||||+++++.++||+|||++++++|||+++..     +++.|+.|++||++|+||.+|+.|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            6999999999999999999999999999999998633     578999999999999999999987

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.51  E-value=3.4e-15  Score=128.03  Aligned_cols=58  Identities=14%  Similarity=0.168  Sum_probs=51.4

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------chHHHHHHHHHHHhhcCCCCc
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS---------AGHDMAIILNEAYSVLSDPNS  105 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~---------~a~~~f~~I~eAYevLsDp~k  105 (453)
                      ...|||+|||++. |+.++||+|||++++++||||++.         .++++|+.|++||++|+|+..
T Consensus        39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~  105 (106)
T 3ag7_A           39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP  105 (106)
T ss_dssp             TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence            3579999999996 999999999999999999999752         137899999999999999863

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.50  E-value=4.6e-15  Score=118.09  Aligned_cols=60  Identities=20%  Similarity=0.247  Sum_probs=53.4

Q ss_pred             CCccccccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchh
Q 012925           46 NMDFDLYDLLGIDS-SSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRL  107 (453)
Q Consensus        46 ~~~~DyYevLGV~~-~As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~  107 (453)
                      +...++|+||||++ +++.++||+|||+|++++|||+++  +.+.|++|++||++|+|+..|+
T Consensus        11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g--~~~~f~~i~~Aye~L~~~~~rk   71 (71)
T 2guz_A           11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG--SPFLATKINEAKDFLEKRGISK   71 (71)
T ss_dssp             CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC--CHHHHHHHHHHHHHHHHHCCCC
T ss_pred             CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHhhhhhcC
Confidence            44568999999999 799999999999999999999963  4579999999999999987764

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.50  E-value=5e-15  Score=124.19  Aligned_cols=54  Identities=22%  Similarity=0.294  Sum_probs=49.7

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHhhcCC
Q 012925           49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-----GHDMAIILNEAYSVLSD  102 (453)
Q Consensus        49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-----a~~~f~~I~eAYevLsD  102 (453)
                      .++|++|||+++++.+|||+|||+++++||||+++..     +.++|+.|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999998643     57899999999999975

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.49  E-value=1.7e-15  Score=165.60  Aligned_cols=72  Identities=32%  Similarity=0.537  Sum_probs=40.8

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhc
Q 012925           46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG--SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTA  117 (453)
Q Consensus        46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~--~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~  117 (453)
                      ....|||+||||+++|+.++||+|||+|++++|||+++  +.+.++|++|++||++|+||.+|+.||++|..+.
T Consensus        18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~   91 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL   91 (780)
T ss_dssp             -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence            55789999999999999999999999999999999985  3468899999999999999999999999886543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.88  E-value=8.3e-10  Score=108.35  Aligned_cols=63  Identities=33%  Similarity=0.520  Sum_probs=54.2

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHhhcCCCCchhhhhH
Q 012925           49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-----GHDMAIILNEAYSVLSDPNSRLAYDK  111 (453)
Q Consensus        49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-----a~~~f~~I~eAYevLsDp~kR~~YD~  111 (453)
                      .++|++||+.++++.++|+++|+++++++|||+.+..     +.++|+.|++||++|+||++|..||.
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            4899999999999999999999999999999998643     47899999999999999999999996

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.59  E-value=2.8e-08  Score=78.15  Aligned_cols=51  Identities=18%  Similarity=0.204  Sum_probs=44.8

Q ss_pred             cccccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcC
Q 012925           49 FDLYDLLGIDSS---SDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLS  101 (453)
Q Consensus        49 ~DyYevLGV~~~---As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLs  101 (453)
                      .+-|+||||+++   ++.++|+++||+|...+|||+.+.  ...+..|++|+++|.
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS--~yl~~ki~~Ake~l~   57 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS--FYLQSKVYRAAERLK   57 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHHHH
Confidence            346889999999   999999999999999999999743  467788999999985

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1

Probab=88.75  E-value=0.37  Score=34.34  Aligned_cols=54  Identities=19%  Similarity=0.355  Sum_probs=32.6

Q ss_pred             hcccceecccCcccccccCceeeeecccCcceeecccCCCCCCCcc-ccccce--EEE
Q 012925          141 VFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEHNPGS-YRNVPS--RLI  195 (453)
Q Consensus       141 vFvDE~~CIGC~kCsl~a~~tFaie~~~GRARV~~Q~~d~E~~iq~-IqsCPv--Is~  195 (453)
                      +.+|...|+||+.|...++..|.+.+..|...+. ...+.-..... ++.||.  |.+
T Consensus         2 i~i~~~~C~~C~~C~~~Cp~~~~~~~~~~~~~~~-~~~~~c~~C~~C~~~CP~~Ai~~   58 (59)
T 1dwl_A            2 IVIDHEECIGCESCVELCPEVFAMIDGEEKAMVT-APDSTAECAQDAIDACPVEAISK   58 (59)
T ss_dssp             EEESSCCCSSCCGGGGTSTTTEEEEECSSCEEES-CTTCCCGGGGTGGGGSTTCCEEE
T ss_pred             eEEChhhCcChhHHHHHCCHHheecCCCCcEEEe-cChhhhhHHHHHHHhCCHhhEEc
Confidence            3567789999999999999767663233443321 11111122345 788998  554

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A

Probab=88.55  E-value=0.043  Score=40.58  Aligned_cols=56  Identities=20%  Similarity=0.356  Sum_probs=33.5

Q ss_pred             hcccceecccCcccccccCceeeeecccCcceeecccCCCCCCCcc-ccccce--EEEe
Q 012925          141 VFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEHNPGS-YRNVPS--RLIV  196 (453)
Q Consensus       141 vFvDE~~CIGC~kCsl~a~~tFaie~~~GRARV~~Q~~d~E~~iq~-IqsCPv--Is~V  196 (453)
                      +.+|...|+||+.|...++..|.+++..|...+.....+.-..-.. ++.||+  |.+.
T Consensus         4 ~~id~~~C~~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~   62 (64)
T 1dax_A            4 FYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWE   62 (64)
T ss_dssp             CEECSTTCCSCCHHHHHCTTTEEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECC
T ss_pred             EEEccccCCCchHHHHhCCccEeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeee
Confidence            4678889999999999999777765432444332210111111234 678888  5543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=84.99  E-value=0.48  Score=50.80  Aligned_cols=47  Identities=15%  Similarity=0.180  Sum_probs=36.7

Q ss_pred             CccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhh
Q 012925           47 MDFDLYDLLGIDSSSDQ--SQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSV   99 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~--~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYev   99 (453)
                      ...|||.+||++.+...  .+|+++||++++..+++      .+.+..|..|+.|
T Consensus       627 ~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          627 NKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ------RHRYTLVDMANKV  675 (681)
T ss_dssp             CCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH------HHHHHHHHHHHHH
T ss_pred             cCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh------HHHHHHHHHhccc
Confidence            34569999999776554  67999999999976655      3578888888876

>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*

Probab=84.55  E-value=0.082  Score=41.24  Aligned_cols=31  Identities=26%  Similarity=0.522  Sum_probs=24.3

Q ss_pred             hcccceecccCcccccccCceeeeecccCcce
Q 012925          141 VFVDEVKCVGCLKCALFAGKTFAIESAYGRAR  172 (453)
Q Consensus       141 vFvDE~~CIGC~kCsl~a~~tFaie~~~GRAR  172 (453)
                      +.+|...|+||+.|...++..|.+++ .|...
T Consensus         4 v~vd~~~CigCg~C~~~CP~~~~~~~-~g~~~   34 (81)
T 1iqz_A            4 TIVDKETCIACGACGAAAPDIYDYDE-DGIAY   34 (81)
T ss_dssp             EEECTTTCCCCSHHHHHCTTTEEECT-TSCEE
T ss_pred             EEEecccCcccChhhHhCchheeeCC-CCeEE
Confidence            56888899999999999998887653 34443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	453
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	3e-13
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	6e-13
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	5e-12
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	4e-11
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	9e-11
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-10
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	6e-10
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	5e-08
d1fxra_	64	d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacte	1e-05
d1iqza_	81	d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyt	4e-05
d1fxda_	58	d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [T	8e-05

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 62.7 bits (152), Expect = 3e-13
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 50  DLYDLLGID--SSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRL 107
            L +LL +      D  +++ AY+      HPD  GS      +  N  +         L
Sbjct: 12  RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQEL--NSLWGTFKTEVYNL 69

Query: 108 AYD 110
             +
Sbjct: 70  RMN 72

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.4 bits (151), Expect = 6e-13
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 46  NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCH--------PDIAGSAGHDMAIILNEAY 97
            +  D Y +LG D S++ S +K  Y+ L    H        P           I +++A+
Sbjct: 13  TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72

Query: 98  SVLSDPNSRLAYDKEQA 114
            +L +  ++  YD +++
Sbjct: 73  KILGNEETKKKYDLQRS 89

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 59.3 bits (143), Expect = 5e-12
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 11/73 (15%)

Query: 47  MDFDLYDLLGI--DSSSDQSQIKTAYRMLQKRCHPDIAGSAG-------HDMAIILNEAY 97
           MD+  + L G+      D   +   ++ LQ++ HPD   S            +  +N+A+
Sbjct: 1   MDY--FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAW 58

Query: 98  SVLSDPNSRLAYD 110
             L  P  R  Y 
Sbjct: 59  QTLRHPLMRAEYL 71

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 56.6 bits (136), Expect = 4e-11
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMA--IILNEAYSVLSDPNSRL 107
           D Y++LG+  ++++ +I+ AY+ L  + HPD         A    + EAY VL+D   R 
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63

Query: 108 AYDK 111
           AYD+
Sbjct: 64  AYDQ 67

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.1 bits (135), Expect = 9e-11
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAG-----HDMAIILNEAYSVLSDPN 104
             +  +G+       Q+K  YR      HPD A           + + LN+A+S   +  
Sbjct: 34  TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93

Query: 105 SRLAY 109
            +  Y
Sbjct: 94  QKPLY 98

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 56.3 bits (135), Expect = 1e-10
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 8/100 (8%)

Query: 50  DLYDLLGI--DSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRL 107
            L DLLG+   +  +   ++ AY    K  HPD  G       +  N  Y  + D     
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKM--NTLYKKMEDGVKYA 66

Query: 108 AYDK--EQAKTAGLRGYTGKPIYSVWFGSESEQRAVFVDE 145
                        +  Y G   +  W+ + +E+  +F  E
Sbjct: 67  HQPDFGGFWDATEIPTY-GTDEWEQWWNAFNEEN-LFCSE 104

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 6e-10
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 47  MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAG-HDMAIILNEAYSVLSDPNS 105
           M  D Y  LG+   +   +IK AYR    R HPD     G  +    + EAY VLSDP  
Sbjct: 1   MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60

Query: 106 RLAYDK 111
           R  +D+
Sbjct: 61  REIFDR 66

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 5e-08
 Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 6/65 (9%)

Query: 50  DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDM---AIILNEAYSVLSDPNSR 106
           ++  ++       +S+ K   R L  + HPD               L    + L     +
Sbjct: 17  EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---Q 73

Query: 107 LAYDK 111
              D+
Sbjct: 74  AFLDQ 78

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]

 Score = 40.5 bits (94), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 139 RAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPE 181
           R  +VD+ +C+ C  C   A   FA++    +A V       +
Sbjct: 2   RKFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQ 44

>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin
species: Bacillus thermoproteolyticus [TaxId: 1427]

 Score = 39.7 bits (92), Expect = 4e-05
 Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 1/46 (2%)

Query: 139 RAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEHNP 184
           +   VD+  C+ C  C   A   +  +   G A V           
Sbjct: 2   KYTIVDKETCIACGACGAAAPDIYDYDE-DGIAYVTLDDNQGIVEV 46

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} Length = 58

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Desulfovibrio gigas [TaxId: 879]

 Score = 38.1 bits (88), Expect = 8e-05
 Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 141 VFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQ 176
           + V++  C+ C  C       F +     +A V+  
Sbjct: 2   IEVND-DCMACEACVEICPDVFEMNEEGDKAVVINP 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	453
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.82
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.74
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.72
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.61
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.6
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.52
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.49
d1fxra_	64	Ferredoxin I {Sulfate-reducing bacteria (Desulfovi	98.09
d1fxda_	58	Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}	96.61
d1iqza_	81	Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1	95.94
d1sj1a_	66	Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI	94.32
d1vjwa_	59	Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	93.02

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=7.9e-21  Score=151.42  Aligned_cols=68  Identities=31%  Similarity=0.567  Sum_probs=62.6

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA--GHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~--a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      ..|||+||||+++||.+|||+|||++++++|||+++..  ..+.|+.|++||+||+||.+|..||++|..
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   71 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcc
Confidence            46999999999999999999999999999999998633  578899999999999999999999998753

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.9e-20  Score=149.66  Aligned_cols=71  Identities=32%  Similarity=0.492  Sum_probs=65.0

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcC
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAG  118 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~  118 (453)
                      .+|||+||||++++|.++||+||+++++++|||++.. .+.+.|+.|++||+||+||.+|+.||++|.....
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~   73 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK   73 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence            4799999999999999999999999999999999874 4688999999999999999999999998876543

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=4.4e-19  Score=147.06  Aligned_cols=68  Identities=26%  Similarity=0.494  Sum_probs=61.5

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------hHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925           47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA--------GHDMAIILNEAYSVLSDPNSRLAYDKEQA  114 (453)
Q Consensus        47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~--------a~~~f~~I~eAYevLsDp~kR~~YD~~g~  114 (453)
                      ...|||+||||+++++.++||+||++|++++|||++...        +.+.|+.|++||+||+||.+|+.||..+.
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            457999999999999999999999999999999998533        36789999999999999999999998753

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.72  E-value=6.6e-20  Score=156.66  Aligned_cols=66  Identities=24%  Similarity=0.340  Sum_probs=59.7

Q ss_pred             ccccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925           48 DFDLYDLLGIDSSS--DQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAK  115 (453)
Q Consensus        48 ~~DyYevLGV~~~A--s~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~  115 (453)
                      ..|||+||||+++|  +.++||+|||+||+++|||+++.  .++|++|++||+||+||.+|+.||..+..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~--~e~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--TTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh--HHHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            46899999999999  78899999999999999999864  46899999999999999999999976543

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=9.9e-17  Score=127.31  Aligned_cols=65  Identities=25%  Similarity=0.443  Sum_probs=56.9

Q ss_pred             cccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925           49 FDLYDLLGIDSSS--DQSQIKTAYRMLQKRCHPDIAGSA-------GHDMAIILNEAYSVLSDPNSRLAYDKEQ  113 (453)
Q Consensus        49 ~DyYevLGV~~~A--s~~eIKkAYRklalk~HPDk~~~~-------a~~~f~~I~eAYevLsDp~kR~~YD~~g  113 (453)
                      .|||+||||++++  +.++||+|||++++++|||+....       +.+.|+.|++||+||+||.+|..|+...
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l   74 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            4899999999964  589999999999999999997532       3567889999999999999999998753

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.60  E-value=6.6e-17  Score=130.14  Aligned_cols=63  Identities=24%  Similarity=0.334  Sum_probs=58.0

Q ss_pred             ccccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhhhHH
Q 012925           48 DFDLYDLLGIDSSS--DQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKE  112 (453)
Q Consensus        48 ~~DyYevLGV~~~A--s~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~YD~~  112 (453)
                      ..+||+||||++++  +.++||+|||++++++|||+++.  .++|++||+||++|+|+.+|..||..
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~--~e~~~~in~Ay~~L~d~~~r~~~~~~   74 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS--HALMQELNSLWGTFKTEVYNLRMNLG   74 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC--HHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC--HHHHHHHHHHHHHHCCHHHHHHHccC
Confidence            35899999999998  99999999999999999999754  57999999999999999999999964

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.52  E-value=1.6e-15  Score=126.35  Aligned_cols=62  Identities=23%  Similarity=0.339  Sum_probs=57.0

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHhhcCCCCchhhh
Q 012925           48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-----GHDMAIILNEAYSVLSDPNSRLAY  109 (453)
Q Consensus        48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-----a~~~f~~I~eAYevLsDp~kR~~Y  109 (453)
                      ..++|++||+...+|.++||+|||++++.+|||+++..     +.+.|+.|++||++|+||.+|..|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            45789999999999999999999999999999997643     467899999999999999999988

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.3e-15  Score=123.23  Aligned_cols=60  Identities=17%  Similarity=0.172  Sum_probs=53.4

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhhH
Q 012925           49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYDK  111 (453)
Q Consensus        49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD~  111 (453)
                      .|+|+||||+.++|.+|||+|||+|+++||||+++.+   +.++|+.|++||++|++   +..||.
T Consensus        16 ~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~   78 (88)
T d1iura_          16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQ   78 (88)
T ss_dssp             HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSS
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhc
Confidence            5899999999999999999999999999999998754   57899999999999975   455554

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]

Probab=98.09  E-value=1.1e-07  Score=71.78  Aligned_cols=59  Identities=20%  Similarity=0.377  Sum_probs=51.1

Q ss_pred             hhhcccceecccCcccccccCceeeeecccCcceeecccCCCCCCCcc-ccccce--EEEec
Q 012925          139 RAVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEHNPGS-YRNVPS--RLIVE  197 (453)
Q Consensus       139 ~~vFvDE~~CIGC~kCsl~a~~tFaie~~~GRARV~~Q~~d~E~~iq~-IqsCPv--Is~Ve  197 (453)
                      +.+|||+..|+||+.|...++..|.+++..|.+++..+..+.....+. ++.||+  |+|++
T Consensus         2 ~~~~VD~~~CigCg~C~~~cP~~f~~~~~~~~~~~~~~~~~~c~~c~~c~~~CP~~aI~~~e   63 (64)
T d1fxra_           2 RKFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED   63 (64)
T ss_dssp             CEEEECTTTCCCCCHHHHHCTTTEEEETTTTEEEESCTTSSCHHHHHHHHHHCTTCCEEEEC
T ss_pred             CeEEEchhhCccCCCccccCcCeEEEecCCCeeeeeccCCCcchhHHHHHhcCCcccEEEEe
Confidence            358999999999999999999999999888988888776665556667 899999  99986

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Desulfovibrio gigas [TaxId: 879]

Probab=96.61  E-value=0.00013  Score=53.54  Aligned_cols=53  Identities=17%  Similarity=0.349  Sum_probs=39.7

Q ss_pred             hcccceecccCcccccccCceeeeecccCcceeecccCCCCCCCcc-ccccce--EEE
Q 012925          141 VFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEHNPGS-YRNVPS--RLI  195 (453)
Q Consensus       141 vFvDE~~CIGC~kCsl~a~~tFaie~~~GRARV~~Q~~d~E~~iq~-IqsCPv--Is~  195 (453)
                      +|+|+ .|+||+.|...++..|.+.+. |..++..+..+.....+. ++.||+  |+.
T Consensus         2 v~v~e-~CigCg~C~~~CP~~~~~~~~-g~~~~~~~~~~~~~~c~~c~~~CP~~AIs~   57 (58)
T d1fxda_           2 IEVND-DCMACEACVEICPDVFEMNEE-GDKAVVINPDSDLDCVEEAIDSCPAEAIVR   57 (58)
T ss_dssp             EEECT-TCCCCCHHHHHCTTTEEECSS-SSSEEESCTTCCCHHHHHHHHHCTTCCEEE
T ss_pred             eeECc-cCcChhhHHHHcChhheEcCC-CCEEEEecCCCCcHHHHHHhhcCChhcEEC
Confidence            57775 799999999999999988875 444555555555555667 899999  653

>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin
species: Bacillus thermoproteolyticus [TaxId: 1427]

Probab=95.94  E-value=0.00057  Score=53.12  Aligned_cols=58  Identities=17%  Similarity=0.316  Sum_probs=41.3

Q ss_pred             hcccceecccCcccccccCceeeeecccCcceeecccCCCCC--------CCcc-ccccce--EEEeccc
Q 012925          141 VFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEH--------NPGS-YRNVPS--RLIVERS  199 (453)
Q Consensus       141 vFvDE~~CIGC~kCsl~a~~tFaie~~~GRARV~~Q~~d~E~--------~iq~-IqsCPv--Is~Ver~  199 (453)
                      ++||...|+||+.|...++..|.+++ .|.+.+.........        ..+. ++.||+  |++++..
T Consensus         4 v~VD~~~CigCg~C~~~cP~~f~~~~-dg~~~~~~~~~~~~~~v~~~~~~~~~~aa~~CP~~AI~v~d~p   72 (81)
T d1iqza_           4 TIVDKETCIACGACGAAAPDIYDYDE-DGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADEP   72 (81)
T ss_dssp             EEECTTTCCCCSHHHHHCTTTEEECT-TSCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESSC
T ss_pred             EEEeHHHCcCcChHhHhCchheeEcC-CCeEEEeecCCcCcccCCHHHHHHHHHHHHhCCcccEEEEeCC
Confidence            68999999999999999999998875 466655433221111        2333 668999  8888744

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Fe3S4-ferredoxin PF1909
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.32  E-value=0.0014  Score=48.38  Aligned_cols=57  Identities=25%  Similarity=0.393  Sum_probs=39.6

Q ss_pred             hhcccceecccCcccccccCceeeeecccCcceeecccCCCC---CCCcc-ccccce--EEEec
Q 012925          140 AVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPE---HNPGS-YRNVPS--RLIVE  197 (453)
Q Consensus       140 ~vFvDE~~CIGC~kCsl~a~~tFaie~~~GRARV~~Q~~d~E---~~iq~-IqsCPv--Is~Ve  197 (453)
                      .+.+|...|+||+.|...+|..|.+.+. |......+....+   ...+. ++.||+  |++++
T Consensus         3 ki~vD~~~Ci~Cg~C~~~CP~~~~~~~~-~~~~~~~~~~~~~~~c~~c~~c~~~CP~~AI~i~e   65 (66)
T d1sj1a_           3 KVSVDQDTCIGDAICASLCPDVFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE   65 (66)
T ss_dssp             EEEECTTTCCCCCHHHHHCTTTEEECTT-SCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred             EEEEeHHHCCCcChhhhhCCceEEEccc-CceEeeccccCChHHHhhhCHhhccCCcccEEEEe
Confidence            3678889999999999999999988753 4444433322221   12345 778999  88765

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin A
species: Thermotoga maritima [TaxId: 2336]

Probab=93.02  E-value=0.0053  Score=44.41  Aligned_cols=53  Identities=23%  Similarity=0.397  Sum_probs=37.9

Q ss_pred             hcccceecccCcccccccCceeeeecccCcceeecccCCCCCCCcc-ccccce--EEE
Q 012925          141 VFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEHNPGS-YRNVPS--RLI  195 (453)
Q Consensus       141 vFvDE~~CIGC~kCsl~a~~tFaie~~~GRARV~~Q~~d~E~~iq~-IqsCPv--Is~  195 (453)
                      +.+|...|+||+.|...++..|.+.+ .|...+..+.. ....... ++.||+  |.+
T Consensus         3 v~iD~~~C~~Cg~C~~~cP~~~~~~~-~g~~~~~~~~~-~c~~c~~c~~~CP~~AI~i   58 (59)
T d1vjwa_           3 VRVDADACIGCGVCENLCPDVFQLGD-DGKAKVLQPET-DLPCAKDAADSCPTGAISV   58 (59)
T ss_dssp             CEECTTTCCCCCHHHHHCTTTEEECT-TSSEEESCSBC-CCTHHHHHHHHCTTCCEEC
T ss_pred             EEEeHHHCCCCCCChHhCchheEEcc-ceeeEEecChH-HCcCcCcccCccCcccEEe
Confidence            56888999999999999999888765 46666544321 1223345 789999  665