Citrus Sinensis ID: 012930

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
Protein Sequence
MRRKNNLFLMVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANSG
Secondary Structure (PSIPRED)
ccccccEEEEEcccccHHHHHcccHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHccccccHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHHccccccEEEccccccccccccccccHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHHccccccEEEccccccccHHHHHHHHHHHccccccccccEEEcccccccHHHHHHHHHHHHcccccccEEEcccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccccccHHHHccHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccHHHHHHHccHcccccccccHHHHHHHHHHccHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHccccHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHHHcHHcccHHHEEccccHHccccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHccccccEEEcccccccHHHHHHcccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHHHHcccccEEccccccccHHHHccc
Coil and Loop (DISEMBL)
mrrknnlflmvtgddvipyvyelPADLFDILLTclpplalqklqtkmpfrdgddcgspdycfengrkrgrygnfNTVWKKLFKTRwsgftdqiepvdWQQRYWEAHVQGCLDEAAElvvlpsfrglisdinisdTILNYIGYEQQMNHLacdysklsyhcqqfgHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHcklspsfvEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSslsildlsgnsiggwlskydrsgplfslgagkslqSLRLLNLRGNNLCKADARDLGSalvhipnleildisdntieddgirsLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTlstlrrpptslsiadnnlgrfcansg
Flexible Loop (DISEMBL)
mrrknnlflmvtgdDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFengrkrgrygnfNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTlrrpptslsiadnnlgrfcansg
Low Complexity Region (SEG)
MRRKNNLFLMVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPssvvvelvsflssGRSLCSLKLRHCHLDRDFGRMVFsslleassslsildlsgnsIGGWLSKYDRSGPLFSLGAGKSLQSlrllnlrgnnlCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANSG
Disordered region (IsUnstruct)
*****NLFLMVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLST***********************
Disordered Region (DISOPRED)
****NNLFLMVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDY*****R***RYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQ*********KLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA***
Disordered Region (DISEMBL)
MRRKNNLFLMVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANSG
Disordered Region (DISPRO)
**RKNNLFLMVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRD**D*************RGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRKNNLFLMVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	453	2.2.26 [Sep-21-2011]
Q4R642	501	T-complex-associated test	N/A	no	0.350	0.317	0.327	7e-06
Q5JU00	501	T-complex-associated test	yes	no	0.355	0.321	0.324	8e-06
A6H639	498	T-complex-associated test	yes	no	0.353	0.321	0.320	1e-05
Q5DU56	1064	Protein NLRC3 OS=Mus musc	no	no	0.333	0.141	0.290	0.0001
P10775	456	Ribonuclease inhibitor OS	no	no	0.326	0.324	0.269	0.0002
B0FPE9	1035	NACHT, LRR and PYD domain	no	no	0.408	0.178	0.307	0.0002
Q8K3Z0	1020	Nucleotide-binding oligom	no	no	0.390	0.173	0.264	0.0003
Q86W24	1093	NACHT, LRR and PYD domain	no	no	0.554	0.229	0.275	0.0005

>sp|Q4R642|TCTE1_MACFA T-complex-associated testis-expressed protein 1 OS=Macaca fascicularis GN=TCTE1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 18/177 (10%)

Query: 272 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRS 331
           L + + +  +L   KL    +D D  R++  SLL+    L  LDLS N IG      DR 
Sbjct: 271 LAAAIKACHTLKIFKLTRSKVDDDKARIIIRSLLD-HPVLEELDLSHNLIG------DRG 323

Query: 332 GPLFSLGAGKSLQS--LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGI 389
               + GA K L    LR+LNL  N +    A+ L  AL H  NL  L++  N IED+G 
Sbjct: 324 ----ARGAAKLLNHSRLRVLNLANNQVRAPGAQSLAHALAHNTNLISLNLRLNCIEDEGG 379

Query: 390 RSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 446
           ++L  + +Q + +C  L  L+L   ELS    + LL  +  +    TS++++ N++G
Sbjct: 380 QALA-HALQ-TNKC--LTTLHLGGNELS-EPTATLLSQVLAINTTLTSINLSCNHIG 431

Macaca fascicularis (taxid: 9541)

>sp|Q5JU00|TCTE1_HUMAN T-complex-associated testis-expressed protein 1 OS=Homo sapiens GN=TCTE1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 18/179 (10%)

Query: 270 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 329
           + L + + +  +L   KL    +D D  R++  SLL+    L  LDLS N IG      D
Sbjct: 269 LSLAAAIKACHTLKIFKLTRSKVDDDKARIIIRSLLD-HPVLEELDLSQNLIG------D 321

Query: 330 RSGPLFSLGAGK--SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD 387
           R     + GA K  S   LR+LNL  N +    A+ L  AL H  NL  L++  N IED+
Sbjct: 322 RG----ARGAAKLLSHSRLRVLNLANNQVRAPGAQSLAHALAHNTNLISLNLRLNCIEDE 377

Query: 388 GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 446
           G ++L  + +Q + +C  L  L+L   ELS    + LL  +  +    TS++++ N++G
Sbjct: 378 GGQALA-HALQ-TNKC--LTTLHLGGNELS-EPTATLLSQVLAINTTLTSINLSCNHIG 431

Homo sapiens (taxid: 9606)

>sp|A6H639|TCTE1_MOUSE T-complex-associated testis-expressed protein 1 OS=Mus musculus GN=Tcte1 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 18/178 (10%)

Query: 272 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRS 331
           L + + +  +L   KL    +D D  R++  SLL+   +L  LDLS N IG      DR 
Sbjct: 269 LAATIKACHTLKIFKLTRSKVDDDKARILIRSLLD-HPALEELDLSHNLIG------DRG 321

Query: 332 GPLFSLGAGK--SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGI 389
               +  A K  S   LR+LNL  N L    A+ L  AL H  NL  L++  N IED+G 
Sbjct: 322 ----ARAAAKLLSHSRLRVLNLANNQLQAPGAQSLAHALAHNTNLVFLNLRLNCIEDEGG 377

Query: 390 RSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447
           +++      A E    L  L+L   +LS    + LL  + T+     SL+++ N++G+
Sbjct: 378 QAI----AHALETNKCLSVLHLGGNKLS-EPTATLLSQMLTVNTTLVSLNLSCNHIGQ 430

Mus musculus (taxid: 10090)

>sp|Q5DU56|NLRC3_MOUSE Protein NLRC3 OS=Mus musculus GN=Nlrc3 PE=2 SV=2

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 14/165 (8%)

Query: 269 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 328
           V  L+  L S ++L SL LR   +  + G    +  L  +++L  LDL+ N +      +
Sbjct: 822 VTVLMRALCSNQTLSSLNLRENSISPE-GAQALTQALCRNNTLKHLDLTANLL------H 874

Query: 329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 388
           DR     ++  G++  SL  L+L+ N +    AR LG AL     L  LD+ +N I D+G
Sbjct: 875 DRGAQAIAVAVGEN-HSLTHLHLQWNFIQAGAARALGQALQLNRTLTTLDLQENAIGDEG 933

Query: 389 IRSLIPYFVQASERCN-PLVELYLENCELSGRGVSQLLDTLSTLR 432
             S     V  + + N  L+ LYL+   +  +G   L + L+  R
Sbjct: 934 ASS-----VAGALKVNTTLIALYLQVASIGSQGAQALGEALTVNR 973

May modulate T-cell activation. Decreases the transcription of genes that are normally up-regulated after T-cell stimulation. Delays degradation of NFKBIA/IKBA.

Mus musculus (taxid: 10090)

>sp|P10775|RINI_PIG Ribonuclease inhibitor OS=Sus scrofa GN=RNH1 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 19/167 (11%)

Query: 289 HCHLDR---DFGRMV------FSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
            CHL++   ++ R+        +S+L A+ +L  L +S N IG      +    +   G 
Sbjct: 136 QCHLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIG------EAGARVLGQGL 189

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399
             S   L  L L    L  A+ +DL   +    +L  LD+  N + D GI  L P  +  
Sbjct: 190 ADSACQLETLRLENCGLTPANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSP 249

Query: 400 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 446
           + R   L  L+L  C+++  G   L   L   +     LS+A N LG
Sbjct: 250 ASR---LKTLWLWECDITASGCRDLCRVLQA-KETLKELSLAGNKLG 292

Ribonuclease inhibitor which inhibits RNASE1, RNASE2 and ANG. May play a role in redox homeostasis.

Sus scrofa (taxid: 9823)

>sp|B0FPE9|NALP3_MACMU NACHT, LRR and PYD domains-containing protein 3 OS=Macaca mulatta GN=NLRP3 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 91/208 (43%), Gaps = 23/208 (11%)

Query: 248 HKIENLSIDISSFIENCPSSVV--------VELVS-FLSSGRSLCSLKLRHCHLDRDFGR 298
           H++E+LS+    F+ N P            +++V   L    + CS +L + HL   F R
Sbjct: 674 HRVESLSL---GFLHNMPKEEEEEEKEGRHLDMVQCVLPGSHAACSHRLVNSHLTSSFCR 730

Query: 299 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 358
            +FS +L  S SL+ LDLS NS+G      D    +          ++R L L    L  
Sbjct: 731 GLFS-VLSTSQSLTELDLSDNSLG------DPGMRVLCETLQHPDCNIRRLWLGRCGLSH 783

Query: 359 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418
               D+   L     L  LD+SDN + D GIR L          CN L +L+L +C L+ 
Sbjct: 784 ECCFDISLVLSSNQKLVELDLSDNALGDFGIRLLCVGLKHL--LCN-LKKLWLVSCCLTS 840

Query: 419 RGVSQLLDTLSTLRRPPTSLSIADNNLG 446
                L   LST  R  T L + +N LG
Sbjct: 841 ACCQDLASVLST-SRSLTRLYVGENALG 867

May function as an inducer of apoptosis. Interacts selectively with ASC and this complex may function as an upstream activator of NF-kappa-B signaling. Inhibits TNF-alpha induced activation and nuclear translocation of RELA/NF-KB p65. Also inhibits transcriptional activity of RELA. Activates caspase-1 in response to a number of triggers including bacterial or viral infection which leads to processing and release of IL1B and IL18.

Macaca mulatta (taxid: 9544)

>sp|Q8K3Z0|NOD2_MOUSE Nucleotide-binding oligomerization domain-containing protein 2 OS=Mus musculus GN=Nod2 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 16/193 (8%)

Query: 237 CRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 296
            R+L     R  +++ L++  +   + C  S    +   L+  ++  SL++ + H+    
Sbjct: 812 ARTLVECALRCEQLQKLALFNNKLTDACACS----MAKLLAHKQNFLSLRVGNNHITAA- 866

Query: 297 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNL 356
           G  V +  L++++SL  L   GNS+G      D+     +       Q+L+ L+L GNN+
Sbjct: 867 GAEVLAQGLKSNTSLKFLGFWGNSVG------DKGTQALAEVVADH-QNLKWLSLVGNNI 919

Query: 357 CKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCEL 416
               A  L   L    +LE L + +N I D+G+ SL     +  +R + L  L L N  +
Sbjct: 920 GSMGAEALALMLEKNKSLEELCLEENHICDEGVYSL----AEGLKRNSTLKFLKLSNNGI 975

Query: 417 SGRGVSQLLDTLS 429
           + RG   LL  LS
Sbjct: 976 TYRGAEALLQALS 988

Induces NF-kappa-B via RICK (CARDIAK, RIP2) and IKK-gamma. Confers responsiveness to intracellular bacterial lipopolysaccharides (LPS).

Mus musculus (taxid: 10090)

>sp|Q86W24|NAL14_HUMAN NACHT, LRR and PYD domains-containing protein 14 OS=Homo sapiens GN=NLRP14 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 116/280 (41%), Gaps = 29/280 (10%)

Query: 169  CLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKL 228
            CL + NAL   ++   L  S    L       ++ VQ LC+ L      L  L    C L
Sbjct: 775  CLNISNALIRSQSLIFLNLSTNNLL-------DDGVQLLCEALRHPKCYLERLSLESCGL 827

Query: 229  SPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLK 286
            + +  E +  +L S ++  H             +N      V+L+S     +  +L SL 
Sbjct: 828  TEAGCEYLSLALISNKRLTH---------LCLADNVLGDGGVKLMSDALQHAQCTLKSLV 878

Query: 287  LRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 346
            LR CH        + +SLL  + SL+ LDL  N    WL   D    L          +L
Sbjct: 879  LRRCHFTSLSSEYLSTSLLH-NKSLTHLDLGSN----WLQ--DNGVKLLCDVFRHPSCNL 931

Query: 347  RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 406
            + L L G  L  A   DL S +++ PNL  LD+ +N ++DDG++ L       +  CN +
Sbjct: 932  QDLELMGCVLTNACCLDLASVILNNPNLRSLDLGNNDLQDDGVKILCDALRYPN--CN-I 988

Query: 407  VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 446
              L LE C L+      L   L   +R    +++  N LG
Sbjct: 989  QRLGLEYCGLTSLCCQDLSSALICNKR-LIKMNLTQNTLG 1027

May be involved in inflammation and spermatogenesis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
297744269	580	unnamed protein product [Vitis vinifera]	0.964	0.753	0.555	1e-132
255560275	598	protein binding protein, putative [Ricin	0.971	0.735	0.565	1e-127
359480084	834	PREDICTED: uncharacterized protein LOC10	0.940	0.510	0.543	1e-125
449443929	604	PREDICTED: uncharacterized protein LOC10	0.966	0.725	0.561	1e-123
449475557	604	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.966	0.725	0.561	1e-123
356503658	604	PREDICTED: uncharacterized protein LOC10	0.951	0.713	0.548	1e-120
356570694	625	PREDICTED: uncharacterized protein LOC10	0.960	0.696	0.503	1e-113
42569177	604	leucine-rich repeats-ribonuclease inhibi	0.960	0.720	0.525	1e-106
297832112	603	leucine-rich repeat family protein [Arab	0.971	0.729	0.528	1e-102
357154921	653	PREDICTED: uncharacterized protein LOC10	0.935	0.649	0.433	1e-84

>gi|297744269|emb|CBI37239.3| unnamed protein product [Vitis vinifera]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/454 (55%), Positives = 317/454 (69%), Gaps = 17/454 (3%)

Query: 13  GDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYG 72
           G+D+   +YELP+ LFD LL  LPPL LQKLQ +MP R  +   S + CF NGRKRG  G
Sbjct: 25  GNDLSSAIYELPSVLFDGLLMHLPPLTLQKLQEEMPLRCWNGHESTNICFRNGRKRGSCG 84

Query: 73  NFNTVWKKLFKTRWSGFTDQIEPVDW-------------QQRYWEAHVQGCLDEAAELVV 119
           NFNT WK LFK+RW     +I+ VDW             QQ YWE H+Q C+DEAAE+ V
Sbjct: 85  NFNTAWKALFKSRWPDLARKIQRVDWSAGVAKYESIIDWQQMYWETHLQNCIDEAAEIAV 144

Query: 120 LPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVE 179
           LPSF G + +I I DTI+  I Y+   +H   DYSKLSYHC+QFG YARCL+LQN LC+ 
Sbjct: 145 LPSFDGGLGEIEIPDTIIKCIVYKGHRSHSTRDYSKLSYHCEQFGSYARCLKLQNMLCIA 204

Query: 180 ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRS 239
           ET  LLR+S+LQ LVLRWI+  EH+  LC+LL QN+ETL+SLEF+ C LS + +  IC S
Sbjct: 205 ETSHLLRKSRLQQLVLRWIKSSEHMDGLCQLLQQNNETLSSLEFIFCNLSSASLNAICDS 264

Query: 240 LCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRM 299
           L  K  + +++++ SI  S+ +E  P S+   LVSFLSSGRSLCSLK     L ++F ++
Sbjct: 265 LRVKDMQTYRVQHFSI-TSTVLERNPLSLPHGLVSFLSSGRSLCSLKFSDNRLGKNFAKL 323

Query: 300 VFSSLLEASSSLSILDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRLLNLRGNNL 356
           VF++LL+ASS LS L+   N+I GWL  +++   + PL S G GKSLQ LR+LNLRGNNL
Sbjct: 324 VFNTLLDASSRLSTLNFEDNNITGWLFNFNQRSSTWPLPSFGLGKSLQLLRVLNLRGNNL 383

Query: 357 CKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCEL 416
           CK DA  L  AL+++PNLEILD+SDN IEDDGI SLIPYFV+ASER +PL +L L +C+L
Sbjct: 384 CKDDADSLKYALIYMPNLEILDLSDNPIEDDGISSLIPYFVEASERHSPLADLSLGDCDL 443

Query: 417 SGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450
           S  GV+QLLD LSTL+ P  SLSIA N LG   A
Sbjct: 444 SCNGVTQLLDVLSTLKNPLHSLSIAHNELGSQAA 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560275|ref|XP_002521155.1| protein binding protein, putative [Ricinus communis] gi|223539724|gb|EEF41306.1| protein binding protein, putative [Ricinus communis]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/453 (56%), Positives = 318/453 (70%), Gaps = 13/453 (2%)

Query: 10  MVTGDDVI--PYVYELPADLFDILLTCLPPLALQKLQTKMPFRD--GDDCG-SPDYCFEN 64
           +++GDDV+    +YE+P+ LF IL+T LPPLAL  LQ +MP+ +  G +C    D C + 
Sbjct: 8   LISGDDVLMLAEIYEIPSHLFSILVTKLPPLALHNLQMEMPYENSNGYECSDGGDGCSKI 67

Query: 65  GRKRGRYGNFNTVWKKLFKTRWSGF--TDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPS 122
           GRKRGR   FNT WK LFK RW     TD +E  +W Q YWE H+Q CLDEAA   ++ S
Sbjct: 68  GRKRGRSCKFNTEWKTLFKLRWPQIVDTDSVESDNWHQAYWEKHLQNCLDEAAGSSMV-S 126

Query: 123 FRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETC 182
           F G I +I + D IL +IG E  +NH    YSKLSYH QQ GHYARCLRLQN LCV ETC
Sbjct: 127 FDGCIGEIKVPDYILKWIGCEGHLNHSI--YSKLSYHFQQLGHYARCLRLQNVLCVAETC 184

Query: 183 QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 242
           QLLR S+LQ+L LRWIR +EHV  LC+LLIQN ETL SLEF+HCKLS +FV+ ICRSL  
Sbjct: 185 QLLRNSQLQNLALRWIRSQEHVDGLCQLLIQNRETLTSLEFVHCKLSSTFVDAICRSLEI 244

Query: 243 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS 302
           K K+ H I+N SI  S F+E    S+   LVSFLSSGRSLCSL+    HLDR F R++F+
Sbjct: 245 KDKQTHGIKNFSIRTSIFLETDLVSLPPSLVSFLSSGRSLCSLRFSGNHLDRKFARILFT 304

Query: 303 SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLF---SLGAGKSLQSLRLLNLRGNNLCKA 359
            L + SS++S+LDLS N I GWLS ++R        + G  KSLQSLR+LN+R NNL K 
Sbjct: 305 LLFDDSSNISVLDLSDNIIAGWLSNFNRGSSSMVPSTFGITKSLQSLRILNVRNNNLRKC 364

Query: 360 DARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR 419
           D + L   L+ +PNL+ILD+ +N IED+GIR LIPYF +A ERC+PLVEL LE+CELS  
Sbjct: 365 DMKSLRYTLLCMPNLDILDLGENPIEDEGIRCLIPYFTEAVERCSPLVELNLESCELSCE 424

Query: 420 GVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS 452
           GV+ LLDTLSTL++P  SL++ADN LG   A +
Sbjct: 425 GVTLLLDTLSTLQKPLNSLTLADNGLGSPIAGA 457

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480084|ref|XP_002267362.2| PREDICTED: uncharacterized protein LOC100261775 [Vitis vinifera]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 246/453 (54%), Positives = 309/453 (68%), Gaps = 27/453 (5%)

Query: 14  DDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGN 73
           +D+   +YELP+ LFD LL  LPPL LQKLQ +MP R  +   S + CF NGRKRG  GN
Sbjct: 81  NDLSSAIYELPSVLFDGLLMHLPPLTLQKLQEEMPLRCWNGHESTNICFRNGRKRGSCGN 140

Query: 74  FNTVWKKLFKTRWSGFTDQIEPVDW-------------QQRYWEAHVQGCLDEAAELVVL 120
           FNT WK LFK+RW     +I+ VDW             QQ YWE H+Q C+DEAAE+ VL
Sbjct: 141 FNTAWKALFKSRWPDLARKIQRVDWSAGVAKYESIIDWQQMYWETHLQNCIDEAAEIAVL 200

Query: 121 PSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEE 180
           PSF G + +I I              +H   DYSKLSYHC+QFG YARCL+LQN LC+ E
Sbjct: 201 PSFDGGLGEIEIPG----------HRSHSTRDYSKLSYHCEQFGSYARCLKLQNMLCIAE 250

Query: 181 TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSL 240
           T  LLR+S+LQ LVLRWI+  EH+  LC+LL QN+ETL+SLEF+ C LS + +  IC SL
Sbjct: 251 TSHLLRKSRLQQLVLRWIKSSEHMDGLCQLLQQNNETLSSLEFIFCNLSSASLNAICDSL 310

Query: 241 CSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMV 300
             K  + +++++ SI  S+ +E  P S+   LVSFLSSGRSLCSLK     L ++F ++V
Sbjct: 311 RVKDMQTYRVQHFSI-TSTVLERNPLSLPHGLVSFLSSGRSLCSLKFSDNRLGKNFAKLV 369

Query: 301 FSSLLEASSSLSILDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRLLNLRGNNLC 357
           F++LL+ASS LS L+   N+I GWL  +++   + PL S G GKSLQ LR+LNLRGNNLC
Sbjct: 370 FNTLLDASSRLSTLNFEDNNITGWLFNFNQRSSTWPLPSFGLGKSLQLLRVLNLRGNNLC 429

Query: 358 KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 417
           K DA  L  AL+++PNLEILD+SDN IEDDGI SLIPYFV+ASER +PL +L L +C+LS
Sbjct: 430 KDDADSLKYALIYMPNLEILDLSDNPIEDDGISSLIPYFVEASERHSPLADLSLGDCDLS 489

Query: 418 GRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450
             GV+QLLD LSTL+ P  SLSIA N LG   A
Sbjct: 490 CNGVTQLLDVLSTLKNPLHSLSIAHNELGSQAA 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443929|ref|XP_004139728.1| PREDICTED: uncharacterized protein LOC101206924 [Cucumis sativus]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/442 (56%), Positives = 302/442 (68%), Gaps = 4/442 (0%)

Query: 14  DDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGN 73
           DDV P +Y+LP  L D L   LPPLAL+ LQ+ MPF   ++    + C  +GRKR R  N
Sbjct: 23  DDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMPFELQNEDEYDNNCLMDGRKRRRSSN 82

Query: 74  FNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINIS 133
           FN  WKK F  RWS  TD I+PVDWQQ YWE H+Q CLDEAAE+  LPSF   I +I +S
Sbjct: 83  FNLAWKKNFDLRWSKLTDTIQPVDWQQIYWETHLQSCLDEAAEIASLPSFSKCIGEIEMS 142

Query: 134 DTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSL 193
           D+IL YI  ++ ++     Y  LSYHCQ+FG YA CLRLQ+ LCV E   +LR  +LQ+L
Sbjct: 143 DSILKYIASKESVHFWRAKYRYLSYHCQEFGCYALCLRLQSVLCVSEIYHILRSCRLQTL 202

Query: 194 VLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENL 253
           +LRWIRF E V  LCKLL QN ETL SLE +HCKLS + V  IC +L   RK  H I + 
Sbjct: 203 LLRWIRFPEQVNGLCKLLNQNRETLTSLELIHCKLSSTSVNSICDALIHNRK-THGILHF 261

Query: 254 SIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSI 313
           SI+ S F E  P ++   LVSF SSGR L S KL    L ++FG+ VF +LL+ASS LS+
Sbjct: 262 SINGSRFDETEPVALPSGLVSFFSSGRYLYSFKLCDNDLGKNFGKFVFHTLLDASSCLSV 321

Query: 314 LDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVH 370
           LDLS N + GWLS ++R   +G   S   GKSLQSLR+LNLRGN L K DA +L  AL H
Sbjct: 322 LDLSENKMTGWLSNFNRRSLTGLQASSMVGKSLQSLRVLNLRGNGLKKDDADNLRYALFH 381

Query: 371 IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLST 430
           IPNLE LD+SDN IEDDGIR+LIPYF++ASER  P  +L LENCELS  GV+QLL+ LST
Sbjct: 382 IPNLEFLDMSDNPIEDDGIRNLIPYFIEASERNCPFADLNLENCELSCDGVTQLLNVLST 441

Query: 431 LRRPPTSLSIADNNLGRFCANS 452
           LR+P  SLS+ADN+LG   A +
Sbjct: 442 LRKPLRSLSVADNSLGSSVAGA 463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475557|ref|XP_004154489.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101227026 [Cucumis sativus]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/442 (56%), Positives = 302/442 (68%), Gaps = 4/442 (0%)

Query: 14  DDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGN 73
           DDV P +Y+LP  L D L   LPPLAL+ LQ+ MPF   ++    + C  +GRKR R  N
Sbjct: 23  DDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMPFELQNEDEYDNNCLMDGRKRRRSSN 82

Query: 74  FNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINIS 133
           FN  WKK F  RWS  TD I+PVDWQQ YWE H+Q CLDEAAE+  LPSF   I +I +S
Sbjct: 83  FNLAWKKNFDLRWSKLTDTIQPVDWQQIYWETHLQSCLDEAAEIASLPSFSKCIGEIEMS 142

Query: 134 DTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSL 193
           D+IL YI  ++ ++     Y  LSYHCQ+FG YA CLRLQ+ LCV E   +LR  +LQ+L
Sbjct: 143 DSILKYIASKESVHFWRAKYRYLSYHCQEFGCYALCLRLQSVLCVSEIYHILRSCRLQTL 202

Query: 194 VLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENL 253
           +LRWIRF E V  LCKLL QN ETL SLE +HCKLS + V  IC +L   RK  H I + 
Sbjct: 203 LLRWIRFPEQVNGLCKLLNQNRETLTSLELIHCKLSSTSVNSICDALIHNRK-THGILHF 261

Query: 254 SIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSI 313
           SI+ S F E  P ++   LVSF SSGR L S KL    L ++FG+ VF +LL+ASS LS+
Sbjct: 262 SINGSRFDETEPVALPSGLVSFXSSGRYLYSFKLCDNDLGKNFGKFVFHTLLDASSCLSV 321

Query: 314 LDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVH 370
           LDLS N + GWLS ++R   +G   S   GKSLQSLR+LNLRGN L K DA +L  AL H
Sbjct: 322 LDLSENKMTGWLSNFNRRSLTGLQASSMVGKSLQSLRVLNLRGNGLKKDDADNLRYALFH 381

Query: 371 IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLST 430
           IPNLE LD+SDN IEDDGIR+LIPYF++ASER  P  +L LENCELS  GV+QLL+ LST
Sbjct: 382 IPNLEFLDMSDNPIEDDGIRNLIPYFIEASERNCPFADLNLENCELSCDGVTQLLNVLST 441

Query: 431 LRRPPTSLSIADNNLGRFCANS 452
           LR+P  SLS+ADN+LG   A +
Sbjct: 442 LRKPLRSLSVADNSLGSSVAGA 463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503658|ref|XP_003520623.1| PREDICTED: uncharacterized protein LOC100794405 [Glycine max]

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/436 (54%), Positives = 290/436 (66%), Gaps = 5/436 (1%)

Query: 14  DDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGN 73
           DD++P +Y+LP+ L D L+T LPPLAL+     +PF   D+ G         RKR R  N
Sbjct: 26  DDLLPCIYDLPSHLLDTLITRLPPLALRTFHHHLPF---DEEGFSHDDSTKKRKRARDWN 82

Query: 74  FNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINIS 133
            N+ W++LF+ RW     QI   DW+Q YWE H+Q CLDEA E+ ++PSF G I DI IS
Sbjct: 83  LNSAWQRLFQLRWPDRVKQIHRTDWEQLYWETHLQDCLDEAVEVALIPSFTGYIGDIQIS 142

Query: 134 DTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSL 193
           D+IL YIG+    NH  CD+SKLSYHC QFG +  CL LQN LC  ET  LLRE KLQSL
Sbjct: 143 DSILKYIGFVGNTNHSTCDHSKLSYHCLQFGSHVSCLGLQNVLCTAETSVLLRECKLQSL 202

Query: 194 VLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENL 253
           VLR IR +E +  LCKLL Q+  TL SLEF+HC LS  F+  I  SL  +R + H I++L
Sbjct: 203 VLRCIRSKEQIDGLCKLLAQHCRTLTSLEFVHCALSTDFINAIFGSLVIERVQKHGIQHL 262

Query: 254 SIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSI 313
           SI  +SF+E C  S+   LVSFLSSGRSLCSLKL   H    F + +F +LL  SS +S+
Sbjct: 263 SIIATSFLEPCTVSLPSGLVSFLSSGRSLCSLKLSENHHGWTFAKDLFVTLLNLSSGISV 322

Query: 314 LDLSGNSIGGWLSKYDR--SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHI 371
           LDLS N I GWL  Y R  SG   S G GKSL+ LR+LNLR NNL K D + L  AL H+
Sbjct: 323 LDLSRNRISGWLFYYRRSLSGSHLSFGNGKSLKLLRVLNLRENNLGKDDVQHLRYALEHV 382

Query: 372 PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTL 431
           PNLE LDISDN+IED+GIR+LIPYFV ASE C  +  L LENC+LS  GV+ LL  LST 
Sbjct: 383 PNLEELDISDNSIEDEGIRNLIPYFVGASETCPRITCLKLENCDLSCVGVNLLLHYLSTF 442

Query: 432 RRPPTSLSIADNNLGR 447
           + P  SLSIA+N LGR
Sbjct: 443 KGPLKSLSIAENYLGR 458

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570694|ref|XP_003553520.1| PREDICTED: uncharacterized protein LOC100817679 [Glycine max]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/463 (50%), Positives = 288/463 (62%), Gaps = 28/463 (6%)

Query: 15  DVIPYVYELPADLFDILLTCLPPLALQKLQTK-MPFRDGDDCGSPDYCFENGRKRGRYGN 73
           D +P +Y+LP+ L   L+T LPP AL+      +PF   D+ G         RKR R  N
Sbjct: 25  DDLPSIYDLPSHLLHTLITRLPPFALRTFHRHHLPF---DEEGFSRDDSTKKRKRARDWN 81

Query: 74  FNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINIS 133
            ++ W++LF  RW     QI+P DW+Q YWE H+Q CLDEAAE+ ++PSF G I DI IS
Sbjct: 82  LSSAWQRLFLLRWPDRVKQIQPTDWEQHYWEIHLQDCLDEAAEVALIPSFSGYIGDIQIS 141

Query: 134 DTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSL 193
           D+IL YIG+    +H +CD+SKLSYHC QFG +  CL LQN LC  ET  LLRE KLQSL
Sbjct: 142 DSILKYIGFVGNTSHSSCDHSKLSYHCLQFGSHVSCLMLQNVLCTAETSVLLRECKLQSL 201

Query: 194 VLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENL 253
           VLR IR +E +  LCKLL Q+   L SLEF+HC LS  F+  I  SL  +R + H I++L
Sbjct: 202 VLRCIRSKEQIDGLCKLLAQHCRMLTSLEFVHCTLSTDFINAIFGSLVIERVQKHGIQHL 261

Query: 254 SIDISSFIENCPSSVVVELVSFLSSG---------------------RSLCSLKLRHCHL 292
           SI  +SF+E C  S+   L+SFLSSG                     RSLCSLKL     
Sbjct: 262 SIIATSFLEPCAVSLPSGLMSFLSSGRYMSIIAFLSVEYLPYATAATRSLCSLKLSDNQH 321

Query: 293 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRLL 349
            R F + +F +LL  SS +S+LDLS N I GWLS ++R   SG   S G GKSL+ LR+L
Sbjct: 322 GRTFAKDLFVTLLNLSSGISVLDLSENRIAGWLSDFNRRFLSGSHMSFGNGKSLKLLRVL 381

Query: 350 NLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL 409
           NLR NNL K D   L  AL H+PNLE LDIS N+IED+GIR+LIPYFV ASE C  +  L
Sbjct: 382 NLRENNLGKDDVESLRYALQHVPNLEELDISGNSIEDEGIRNLIPYFVGASETCPHITCL 441

Query: 410 YLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS 452
            LENC+LS  GV+ LL  LS  + P  SLSIADN LG   A +
Sbjct: 442 KLENCDLSCVGVNNLLHILSNFKGPLKSLSIADNYLGSQVAEA 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569177|ref|NP_179611.2| leucine-rich repeats-ribonuclease inhibitor domain-containing protein [Arabidopsis thaliana] gi|330251888|gb|AEC06982.1| leucine-rich repeats-ribonuclease inhibitor domain-containing protein [Arabidopsis thaliana]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 237/451 (52%), Positives = 291/451 (64%), Gaps = 16/451 (3%)

Query: 10  MVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFR------DGDDCGSPDYCFE 63
           ++  D+ IP +YELP++L D ++  LP LALQK QT MPF        GDDC     C  
Sbjct: 19  LLESDNPIPDLYELPSELLDGIVAHLPALALQKFQTNMPFHCLDSYESGDDC-----CLI 73

Query: 64  NGRKRGRYGNFNTVWKKLFKTRWSGFTDQIE-PVDWQQRYWEAHVQGCLDEAAELVVLPS 122
            GRKR R     + WK LFK RW  F D++E P DWQQ YWE H+Q C+DEAAE+ + P+
Sbjct: 74  TGRKRARNDVLGSSWKLLFKLRWPDFVDRVESPADWQQLYWEKHLQNCVDEAAEVALRPT 133

Query: 123 FRGLISDINISDTILNYIGYEQQ-MNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEET 181
           F G I  IN+SD IL YI +E+  M    C   +LS+H Q FG Y RCLRL N LCV ET
Sbjct: 134 FSGRICSINVSDNILRYICHEEHIMTCQNCVCKELSFHFQTFGPYLRCLRLLNVLCVTET 193

Query: 182 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLC 241
            +LLR SKL+SLVLRWIR E+HV+ LCKLLIQ+ ETL SLE +HCKLS S +  IC SL 
Sbjct: 194 SELLRTSKLRSLVLRWIRSEKHVEPLCKLLIQSRETLTSLELIHCKLSLSSISAICTSLH 253

Query: 242 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF 301
            K      ++   I  SS IE  P +     VSFL S R+L SL     +LDR F RMVF
Sbjct: 254 EKGIHTTGMQRFCIKTSS-IEIDPLAAPSAFVSFLMSVRTLHSLHFGDSNLDRYFARMVF 312

Query: 302 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA 361
           S+LL++SS+LS LDLS N+I GWLS +     + SL +GKSLQSL  LNLRGN L + DA
Sbjct: 313 STLLDSSSNLSSLDLSENNISGWLSTFSCKSVVGSLSSGKSLQSLCKLNLRGNELDRYDA 372

Query: 362 RDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 421
            +L  AL+H+P LE LD+S N IED GIRSLI YF +  +  + L +L LENCELS  GV
Sbjct: 373 ENLAHALLHMPGLESLDLSGNPIEDSGIRSLISYFTKNPD--SRLADLNLENCELSCCGV 430

Query: 422 SQLLDTLSTLRRPPTSLSIADNNLGRFCANS 452
            + LDTLS L +P   LS+ADN LG   A +
Sbjct: 431 IEFLDTLSMLEKPLKFLSVADNALGSEVAEA 461

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832112|ref|XP_002883938.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297329778|gb|EFH60197.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/445 (52%), Positives = 289/445 (64%), Gaps = 5/445 (1%)

Query: 10  MVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRG 69
           ++  D+ IP +YELP++L D ++  LP LALQ  QT MPF   DD  S D C  NGRKR 
Sbjct: 19  LLDSDNPIPDLYELPSELLDAVIAHLPALALQNFQTNMPFNCLDDYESGDDCLINGRKRS 78

Query: 70  -RYGNFNTVWKKLFKTRWSGFTDQIE-PVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLI 127
            R     + WK LFK RW  F D++E P DWQQ YWE H+Q C+DEAAE+ + P+F G I
Sbjct: 79  SRNDPLGSSWKMLFKLRWPDFVDRVESPADWQQLYWEKHLQNCVDEAAEVALRPTFSGRI 138

Query: 128 SDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRE 187
             IN+SD IL YI +E+ M+   C   +LS+H Q FG Y RCLRL N LCV ET +LL  
Sbjct: 139 RSINVSDNILRYICHEEHMSCQKCVCKELSFHFQTFGPYLRCLRLLNVLCVTETSELLMT 198

Query: 188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI 247
           SKLQSLVLRWIR E+HV+ LCKLLIQ  +TL SLEF+HCKLS S +  IC SL  K    
Sbjct: 199 SKLQSLVLRWIRSEKHVEPLCKLLIQTRDTLTSLEFIHCKLSSSSISAICASLHEKGIHT 258

Query: 248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEA 307
             ++   I  SS IE  P +     VSFL S R+L SL     +LDR   RMVFS+LL++
Sbjct: 259 TGMQRFCIKTSS-IEIDPLAAPSAFVSFLMSVRTLHSLHFCDSNLDRHIARMVFSTLLDS 317

Query: 308 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA 367
           SS+LS LDLS N+I GWLS +     + SL +GK LQSL  LNLRGN L + DA +L  A
Sbjct: 318 SSNLSSLDLSENNISGWLSTFSCRSVVGSLSSGKFLQSLCKLNLRGNELDRYDAENLAHA 377

Query: 368 LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 427
           L+H+P LE LD+S N IED GIRSLI YF +  +  + L +L LENCELS  GV + LDT
Sbjct: 378 LLHMPGLESLDLSGNPIEDSGIRSLISYFTKNLD--SRLADLDLENCELSCCGVIEFLDT 435

Query: 428 LSTLRRPPTSLSIADNNLGRFCANS 452
           LS L +P   LS+ADN LG   A +
Sbjct: 436 LSMLEKPIKFLSVADNALGSEVAEA 460

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357154921|ref|XP_003576947.1| PREDICTED: uncharacterized protein LOC100822893 [Brachypodium distachyon]

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 191/441 (43%), Positives = 259/441 (58%), Gaps = 17/441 (3%)

Query: 23  LPADLFDILLTCLPPLALQKLQTKMPFRDGDDC------GSPDYCFENGRKRGRYGNFNT 76
           LP +L   L   L P AL+ L      R           G  D     G KR R  +FNT
Sbjct: 75  LPWELLHQLAPRLSPFALESLHDAAHARCCSSASTTVRFGGLDGGNRRGIKRSRCEDFNT 134

Query: 77  VWKKLFKTRW-----SGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDIN 131
            W+ LFK RW     +G  + +  VDWQQ+YWE H+Q CLDEAAE  +LPSFRG I ++ 
Sbjct: 135 TWQALFKCRWPLDDCTGQANFVT-VDWQQQYWEKHLQECLDEAAEAALLPSFRGSIDELI 193

Query: 132 ISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQ 191
           IS  I++ +     ++     YS+LSYHC + G+Y R LRLQN LC  E C +L+ S+L+
Sbjct: 194 ISAKIMSSVYLSADISQ---QYSRLSYHCTRLGYYVRRLRLQNVLCTVEICSMLQHSRLE 250

Query: 192 SLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIE 251
           +LV   I  E  V  +C LL  +++TL SLEF+HC+L P  ++ IC SLC +  + H+I+
Sbjct: 251 TLVFIRIISEAEVNGVCLLLSCHAKTLVSLEFIHCQLYPVVMDKICSSLCQQGSQNHEIQ 310

Query: 252 NLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSL 311
            LSI  S   E+ PS++   L++FLS  +SL  L L    +   F +++  +LL++S  L
Sbjct: 311 RLSIKSSRVCESNPSTISAGLLNFLSHAKSLQLLSLNDAKMQPSFAKIIIHTLLKSSCGL 370

Query: 312 SILDLSGNSIGGWLSKYDRSGPLFS--LGAGKSLQSLRLLNLRGNNLCKADARDLGSALV 369
             LD+S N I GWLS  DRS   FS  L +  SL SL +L LRGNNL K D  DL + + 
Sbjct: 371 QTLDISENDIAGWLSTVDRSCTSFSSELESNTSLSSLTVLKLRGNNLQKGDMEDLCNIIA 430

Query: 370 HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLS 429
            + NL  LDISDN I D+GIR LI +F +A ++ N L  L  ENC+LS  GV++LL+ L+
Sbjct: 431 KMSNLRSLDISDNPITDEGIRFLIHFFERALQKENLLWRLRAENCDLSSIGVTKLLECLT 490

Query: 430 TLRRPPTSLSIADNNLGRFCA 450
           ++ RP   LSIADN LG   A
Sbjct: 491 SVNRPLDMLSIADNYLGSSVA 511

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
TAIR|locus:2039027	604	AT2G20210 "AT2G20210" [Arabido	0.955	0.716	0.476	2.3e-94
UNIPROTKB|Q86W25	1043	NLRP13 "NACHT, LRR and PYD dom	0.233	0.101	0.260	0.00014
UNIPROTKB|G3MYV6	1037	Bt.111263 "Uncharacterized pro	0.178	0.078	0.362	0.00017

TAIR|locus:2039027 AT2G20210 "AT2G20210" [Arabidopsis thaliana (taxid:3702)]

 Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
 Identities = 210/441 (47%), Positives = 258/441 (58%)

Query:    10 MVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFR--DGDDCGSPDYCFENGRK 67
             ++  D+ IP +YELP++L D ++  LP LALQK QT MPF   D  + G  D C   GRK
Sbjct:    19 LLESDNPIPDLYELPSELLDGIVAHLPALALQKFQTNMPFHCLDSYESGD-DCCLITGRK 77

Query:    68 RGRYGNFNTVWKKLFKTRWSGFTDQIE-PVDWQQRYWEAHVQGCLDEAAELVVLPSFRGL 126
             R R     + WK LFK RW  F D++E P DWQQ YWE H+Q C+DEAAE+ + P+F G 
Sbjct:    78 RARNDVLGSSWKLLFKLRWPDFVDRVESPADWQQLYWEKHLQNCVDEAAEVALRPTFSGR 137

Query:   127 ISDINISDTILNYIGYEQQ-MNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLL 185
             I  IN+SD IL YI +E+  M    C   +LS+H Q FG Y RCLRL N LCV ET +LL
Sbjct:   138 ICSINVSDNILRYICHEEHIMTCQNCVCKELSFHFQTFGPYLRCLRLLNVLCVTETSELL 197

Query:   186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245
             R SKL+SLVLRWIR E+HV+ LCKLLIQ+ ETL SLE +HCKLS S +  IC SL  K  
Sbjct:   198 RTSKLRSLVLRWIRSEKHVEPLCKLLIQSRETLTSLELIHCKLSLSSISAICTSLHEKGI 257

Query:   246 RIHKIENLSIDISSFIENCPXXXXXXXXXXXXXGRSLCSLKLRHCHLDRDFGRMVFXXXX 305
                 ++   I  SS IE  P              R+L SL     +LDR F RMVF    
Sbjct:   258 HTTGMQRFCIKTSS-IEIDPLAAPSAFVSFLMSVRTLHSLHFGDSNLDRYFARMVFSTLL 316

Query:   306 XXXXXXXXXXXXXXXIGGWLSKYDRSGPLFSLGAGKSLQSXXXXXXXXXXXCKADARDLG 365
                            I GWLS +     + SL +GKSLQS            + DA +L 
Sbjct:   317 DSSSNLSSLDLSENNISGWLSTFSCKSVVGSLSSGKSLQSLCKLNLRGNELDRYDAENLA 376

Query:   366 SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL 425
              AL+H+P LE LD+S N IED GIRSLI YF +  +  + L +L LENCELS  GV + L
Sbjct:   377 HALLHMPGLESLDLSGNPIEDSGIRSLISYFTKNPD--SRLADLNLENCELSCCGVIEFL 434

Query:   426 DTLSTLRRPPTSLSIADNNLG 446
             DTLS L +P   LS+ADN LG
Sbjct:   435 DTLSMLEKPLKFLSVADNALG 455

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

UNIPROTKB|Q86W25 NLRP13 "NACHT, LRR and PYD domains-containing protein 13" [Homo sapiens (taxid:9606)]

 Score = 89 (36.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 30/115 (26%), Positives = 54/115 (46%)

Query:   142 YEQQMNHLACDYSKLSYHCQQFGHYARCLRLQ-NALCVEETCQLLRESKLQSLVLRWIRF 200
             +E  +N L  +  + S  C +       LRL  ++  +E   ++L  SK  S +  W   
Sbjct:   659 FEVDLNILEDEELQASSFCLKHCKRLNKLRLSVSSHILERDLEILETSKFDSRMHAW--- 715

Query:   201 EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSI 255
                  ++C  L+ N E L  L+  + KL  S V+G+C +L + R ++ K+   S+
Sbjct:   716 ----NSICSTLVTN-ENLHELDLSNSKLHASSVKGLCLALKNPRCKVQKLTCKSV 765

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|G3MYV6 Bt.111263 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 109 (43.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 33/91 (36%), Positives = 50/91 (54%)

Query:   359 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418
             A  R+L  AL H  +L+ILD+ +N I+D+G++ L    V  S  C  L  L LE C L+ 
Sbjct:   932 AGCRELAHALKHNGHLKILDVGNNDIQDEGVKELCS--VLKSPSC-VLQTLGLEKCSLTA 988

Query:   419 ---RGVSQLLDTLSTLRRPPTSLSIADNNLG 446
                R +S +L +  +L     +L++  NNLG
Sbjct:   989 ACCRPLSSVLGSSKSLE----NLNLLGNNLG 1015

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	453
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-12
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-10
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 13/179 (7%)

Query: 270 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 329
             ++  L    SL  LKL +  L     R++   L +   +L  L L  N + G      
Sbjct: 98  CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG------ 151

Query: 330 RSGPLFSL-GAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 388
                 +L  A ++ + L+ LNL  N +  A  R L   L    NLE+LD+++N + D+G
Sbjct: 152 --ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209

Query: 389 IRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447
             +L      AS +   L  L L +  L+  G + L   L +      +LS++ N++  
Sbjct: 210 ASALAETL--ASLKS--LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 60/179 (33%), Positives = 80/179 (44%), Gaps = 13/179 (7%)

Query: 272 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRS 331
           L+  L+ G  L  L L    L  D G  V  SLL  SSSL  L L+ N +G      DR 
Sbjct: 73  LLQGLTKGCGLQELDLSDNALGPD-GCGVLESLLR-SSSLQELKLNNNGLG------DRG 124

Query: 332 GPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRS 391
             L + G      +L  L L  N L  A    L  AL    +L+ L++++N I D GIR+
Sbjct: 125 LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184

Query: 392 LIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450
           L             L  L L N  L+  G S L +TL++L+     L++ DNNL    A
Sbjct: 185 LAEGLKANCN----LEVLDLNNNGLTDEGASALAETLASLKSLEV-LNLGDNNLTDAGA 238

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 25/122 (20%)

Query: 305 LEASSSLSILDLSGNSIGG----WLSKYDRSGPLFSLGAGKSLQSLRLLNL------RGN 354
           LE    L  +DLSGN+IG      L     +           +++LR++N       R  
Sbjct: 26  LEMMDELVEVDLSGNTIGTEAMEELCNVIAN-----------VRNLRVVNFSDAFTGRDK 74

Query: 355 NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC 414
           +   ++   L  AL+  P L+ +D+SDN    +    L      ++     LV L L N 
Sbjct: 75  DELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSST----DLVHLKLNNN 130

Query: 415 EL 416
            L
Sbjct: 131 GL 132

Length = 388

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 22/248 (8%)

Query: 168 RCLRLQNALCVEETCQ----LLRESKLQSLVLRWIRFE-EHVQALCKLLIQNSETLASLE 222
           + L L +     + C     LLR S LQ L L         ++ L K L      L  L 
Sbjct: 84  QELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143

Query: 223 FLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL 282
               +L        C +L    +    ++ L++  +   +    ++   L +      +L
Sbjct: 144 LGRNRLE----GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN----CNL 195

Query: 283 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW-LSKYDRSGPLFSLGAGK 341
             L L +  L  D G    +  L +  SL +L+L  N++     +         +     
Sbjct: 196 EVLDLNNNGL-TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA-------LASALLS 247

Query: 342 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE 401
              SL  L+L  N++    A+DL   L    +L  LD+  N   ++G + L    ++   
Sbjct: 248 PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGN 307

Query: 402 RCNPLVEL 409
               L   
Sbjct: 308 ELESLWVK 315

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 341 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN-TIEDD-GIRSLIPYFVQ 398
             L  L++L L GN L +  A+ L SAL   P+L+ L +S N T     G++SL+     
Sbjct: 20  PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-- 77

Query: 399 ASERCNPLVELYLENCELSGRGVSQLLDTLST 430
              +   L EL L +  L   G   L   L +
Sbjct: 78  --TKGCGLQELDLSDNALGPDGCGVLESLLRS 107

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	453
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.89
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.88
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.87
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.82
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.81
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.77
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.76
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.72
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.72
KOG4341	483	consensus F-box protein containing LRR [General fu	99.66
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.6
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.56
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.52
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.51
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.5
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.49
KOG4308	478	consensus LRR-containing protein [Function unknown	99.49
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.49
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.46
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.45
KOG4308	478	consensus LRR-containing protein [Function unknown	99.4
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.39
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.39
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.32
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.32
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.3
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.23
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.21
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.19
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.94
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.93
KOG4341	483	consensus F-box protein containing LRR [General fu	98.9
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.82
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.79
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.67
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.65
PLN03150	623	hypothetical protein; Provisional	98.6
PLN03150	623	hypothetical protein; Provisional	98.52
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.44
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.44
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.39
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.33
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.32
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.28
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.27
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.24
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.21
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.15
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.14
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.01
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.98
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.92
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.76
PRK15386	426	type III secretion protein GogB; Provisional	97.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.55
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.3
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.24
PRK15386	426	type III secretion protein GogB; Provisional	97.24
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.14
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	97.06
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.03
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.78
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	96.7
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.56
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.55
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	96.32
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.17
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.57
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.49
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	94.87
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	94.73
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	94.06
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.78
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	93.49
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	92.55
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	91.49
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	90.37

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.89  E-value=4.8e-21  Score=185.10  Aligned_cols=246  Identities=25%  Similarity=0.245  Sum_probs=193.6

Q ss_pred             HHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCC
Q 012930          180 ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS  259 (453)
Q Consensus       180 ~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~  259 (453)
                      ++..+..+++|++|++++|.+.......+..+... ++|++|++++|.+++.+...+...+...   .++|+.|++++|.
T Consensus        73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~---~~~L~~L~L~~n~  148 (319)
T cd00116          73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDL---PPALEKLVLGRNR  148 (319)
T ss_pred             HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhC---CCCceEEEcCCCc
Confidence            45556678899999999998765555555555555 7799999999999988888887776653   2789999999999


Q ss_pred             CCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcC
Q 012930          260 FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA  339 (453)
Q Consensus       260 l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~  339 (453)
                      ++..+.    ..+...+..+++|++|++++|.+++.....++.++... ++|+.|++++|.+++...    ..++..+. 
T Consensus       149 l~~~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~----~~l~~~~~-  218 (319)
T cd00116         149 LEGASC----EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGA----SALAETLA-  218 (319)
T ss_pred             CCchHH----HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHH----HHHHHHhc-
Confidence            986332    25677778889999999999999987777777766443 899999999999885322    11333333 


Q ss_pred             CCCCCcccEEEecCCCCChhhHHHHHHHHh-CCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          340 GKSLQSLRLLNLRGNNLCKADARDLGSALV-HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       340 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                        .+++|++|++++|.+++.++..+...+. ..+.|++|++++|.+++.|...+..    .+..+++|+++++++|.+++
T Consensus       219 --~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~----~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         219 --SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE----VLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             --ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH----HHhcCCCccEEECCCCCCcH
Confidence              6789999999999999888777776554 3678999999999999888777764    35555899999999999999


Q ss_pred             hhHHHHHHHHhcCCCCCcEEECcCCCC
Q 012930          419 RGVSQLLDTLSTLRRPPTSLSIADNNL  445 (453)
Q Consensus       419 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l  445 (453)
                      .++..++..+....+.|++|++.+|.+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         293 EGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            999999999988436799999998864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.88  E-value=4.9e-21  Score=184.98  Aligned_cols=261  Identities=21%  Similarity=0.232  Sum_probs=202.8

Q ss_pred             cceeccccccc-----hHHHhhhhcCCCccEEEeccccCh---HHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHH
Q 012930          167 ARCLRLQNALC-----VEETCQLLRESKLQSLVLRWIRFE---EHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR  238 (453)
Q Consensus       167 l~~l~L~~~~~-----~~~~~~l~~~~~L~~L~Ls~~~~~---~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  238 (453)
                      ++.+.+.++..     ..+...+...+.+++++++++...   ..+.. ....+..+++|++|++++|.+....+..+..
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQS-LLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHH-HHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            56666666554     335555666788999999998865   22333 3333445889999999999998777776665


Q ss_pred             HhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCC-CCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcC
Q 012930          239 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS  317 (453)
Q Consensus       239 ~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls  317 (453)
                      ....     ++|++|++++|.+++.+..    .+...+..+ ++|++|++++|.+++..+..+...+ ..+++|++|+++
T Consensus       104 l~~~-----~~L~~L~ls~~~~~~~~~~----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~~L~~L~l~  173 (319)
T cd00116         104 LLRS-----SSLQELKLNNNGLGDRGLR----LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL-RANRDLKELNLA  173 (319)
T ss_pred             Hhcc-----CcccEEEeeCCccchHHHH----HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH-HhCCCcCEEECc
Confidence            3211     3499999999999863333    566677777 9999999999999977776666654 345899999999


Q ss_pred             CCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHH
Q 012930          318 GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFV  397 (453)
Q Consensus       318 ~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~  397 (453)
                      +|.+++.+.    ..++..+.   .+++|+.|++++|.+++.++..++..+..+++|+.|++++|.+++.|+..++..+ 
T Consensus       174 ~n~l~~~~~----~~l~~~l~---~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~-  245 (319)
T cd00116         174 NNGIGDAGI----RALAEGLK---ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL-  245 (319)
T ss_pred             CCCCchHHH----HHHHHHHH---hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH-
Confidence            999985321    11333444   4579999999999999999888999999999999999999999998888877533 


Q ss_pred             hhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930          398 QASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       398 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                        ....+.|++|++++|.+++.+...++..+... ++|+++++++|.+++++
T Consensus       246 --~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~~~~  294 (319)
T cd00116         246 --LSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFGEEG  294 (319)
T ss_pred             --hccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCcHHH
Confidence              22458999999999999999999999999984 67999999999999875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.87  E-value=2.9e-21  Score=176.68  Aligned_cols=267  Identities=17%  Similarity=0.157  Sum_probs=208.9

Q ss_pred             cceeccccccchH-----HHhhhhcCCCccEEEeccccChHH---HHHH---HHHHHhcCCCccEEEcCCCCCChhHHHH
Q 012930          167 ARCLRLQNALCVE-----ETCQLLRESKLQSLVLRWIRFEEH---VQAL---CKLLIQNSETLASLEFLHCKLSPSFVEG  235 (453)
Q Consensus       167 l~~l~L~~~~~~~-----~~~~l~~~~~L~~L~Ls~~~~~~~---~~~~---~~~l~~~~~~L~~L~L~~n~l~~~~~~~  235 (453)
                      +..++++++.+..     +...+.+.++|+.-++|.--....   +...   +...+..+|.|+.++||.|.+...+++.
T Consensus        32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~  111 (382)
T KOG1909|consen   32 LTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRG  111 (382)
T ss_pred             eEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHH
Confidence            4555566655544     333445557787777766432211   1111   2222346679999999999999999999


Q ss_pred             HHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHH-----hhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCC
Q 012930          236 ICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS-----FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSS  310 (453)
Q Consensus       236 l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~-----~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~  310 (453)
                      +.+.+.+    +..|++|.|.+|++...+...+..++..     .+..-+.|+++..+.|.+.+.+...++.++... +.
T Consensus       112 l~~ll~s----~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~-~~  186 (382)
T KOG1909|consen  112 LEELLSS----CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH-PT  186 (382)
T ss_pred             HHHHHHh----ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc-cc
Confidence            9988887    4899999999999988776655443332     344557899999999999998888888876554 89


Q ss_pred             CCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHH
Q 012930          311 LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIR  390 (453)
Q Consensus       311 L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~  390 (453)
                      |+.+.++.|.|...+    ...+..++.   +|++|++|||+.|-++..|...+++++..+++|++|++++|.+.+.|+.
T Consensus       187 leevr~~qN~I~~eG----~~al~eal~---~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~  259 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEG----VTALAEALE---HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI  259 (382)
T ss_pred             cceEEEecccccCch----hHHHHHHHH---hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence            999999999988432    233555565   7899999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCC--Cccc
Q 012930          391 SLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL--GRFC  449 (453)
Q Consensus       391 ~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l--~~~~  449 (453)
                      ++..++..   ..+.|+.|.|.+|.|+..++..++..+.. .+.|..|+|++|.+  ++++
T Consensus       260 a~~~al~~---~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l~e~de~  316 (382)
T KOG1909|consen  260 AFVDALKE---SAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRLGEKDEG  316 (382)
T ss_pred             HHHHHHhc---cCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccccccchh
Confidence            99987643   35899999999999999999999999988 57799999999999  4443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.86  E-value=1.7e-20  Score=171.60  Aligned_cols=252  Identities=23%  Similarity=0.282  Sum_probs=207.4

Q ss_pred             HHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCC---CCChhHHHH---HHHHhhccccCCcceeEE
Q 012930          180 ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC---KLSPSFVEG---ICRSLCSKRKRIHKIENL  253 (453)
Q Consensus       180 ~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n---~l~~~~~~~---l~~~L~~~~~~~~~L~~L  253 (453)
                      +...+.....+++++||+|.+...-...+...+.+.+.|+..+++.-   ++....+.+   +.++|..    +++|+++
T Consensus        22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~----~~~L~~l   97 (382)
T KOG1909|consen   22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLG----CPKLQKL   97 (382)
T ss_pred             HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhc----CCceeEe
Confidence            34455567899999999999776655555555666789999999865   344444444   3455554    4689999


Q ss_pred             EccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHh--------hCCCCCCEEEcCCCCCCCcc
Q 012930          254 SIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL--------EASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       254 ~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~--------~~~~~L~~L~Ls~n~l~~~~  325 (453)
                      +||+|-|...++.    .+...++++.+|++|.|.+|.+...+...+..+|+        ...+.|+++...+|++.+. 
T Consensus        98 dLSDNA~G~~g~~----~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~-  172 (382)
T KOG1909|consen   98 DLSDNAFGPKGIR----GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG-  172 (382)
T ss_pred             eccccccCccchH----HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc-
Confidence            9999999997766    88888999999999999999998877777666543        2356899999999998853 


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  405 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~  405 (453)
                         +...+...+.   .++.|+.+.+..|.|...|+..+..++.++++|+.|||..|.++.+|..++..    ++..++.
T Consensus       173 ---ga~~~A~~~~---~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak----aL~s~~~  242 (382)
T KOG1909|consen  173 ---GATALAEAFQ---SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK----ALSSWPH  242 (382)
T ss_pred             ---cHHHHHHHHH---hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH----Hhcccch
Confidence               3333555666   56899999999999999999999999999999999999999999999998884    4677789


Q ss_pred             ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      |+.|++++|.+...|+.++.+++...+++|+.|.+.+|.|+..+.
T Consensus       243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~  287 (382)
T KOG1909|consen  243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA  287 (382)
T ss_pred             heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence            999999999999999999999999987889999999999987654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.82  E-value=3.7e-20  Score=204.76  Aligned_cols=244  Identities=22%  Similarity=0.218  Sum_probs=121.2

Q ss_pred             cCCceeeeehhhhc--------cccceeccccccch-HHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEE
Q 012930          151 CDYSKLSYHCQQFG--------HYARCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASL  221 (453)
Q Consensus       151 ~~l~~l~l~~~~~~--------~~l~~l~L~~~~~~-~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L  221 (453)
                      .+++.+.++.+.+.        ..++.|+++++... ..+..+..+++|++|+|++|.+....+.    .+.++++|++|
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L  193 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFL  193 (968)
T ss_pred             CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh----hhhhCcCCCee
Confidence            45555555544221        14566666666554 2444555666666666666664332221    13455666666


Q ss_pred             EcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHH
Q 012930          222 EFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF  301 (453)
Q Consensus       222 ~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~  301 (453)
                      +|++|.+.+..+..+..        +.+|+.|++++|.++.        .++..++.+++|++|++++|.+.+..+..+ 
T Consensus       194 ~L~~n~l~~~~p~~l~~--------l~~L~~L~L~~n~l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-  256 (968)
T PLN00113        194 TLASNQLVGQIPRELGQ--------MKSLKWIYLGYNNLSG--------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-  256 (968)
T ss_pred             eccCCCCcCcCChHHcC--------cCCccEEECcCCccCC--------cCChhHhcCCCCCEEECcCceeccccChhH-
Confidence            66666665554444433        3556666666666554        344445555666666666665555444433 


Q ss_pred             HHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCC
Q 012930          302 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISD  381 (453)
Q Consensus       302 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  381 (453)
                          ..+++|++|++++|.+.+..+        ..+.   .+++|++|++++|.++.    .+|..+..+++|+.|++++
T Consensus       257 ----~~l~~L~~L~L~~n~l~~~~p--------~~l~---~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~  317 (968)
T PLN00113        257 ----GNLKNLQYLFLYQNKLSGPIP--------PSIF---SLQKLISLDLSDNSLSG----EIPELVIQLQNLEILHLFS  317 (968)
T ss_pred             ----hCCCCCCEEECcCCeeeccCc--------hhHh---hccCcCEEECcCCeecc----CCChhHcCCCCCcEEECCC
Confidence                224556666666665554332        3333   33455555555555443    2444444455555555555


Q ss_pred             CCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          382 NTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       382 N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      |.+++.     .|   ..+..+++|+.|++++|.++..    ++..+..+ ++|+.|++++|.+++
T Consensus       318 n~~~~~-----~~---~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~~-~~L~~L~Ls~n~l~~  370 (968)
T PLN00113        318 NNFTGK-----IP---VALTSLPRLQVLQLWSNKFSGE----IPKNLGKH-NNLTVLDLSTNNLTG  370 (968)
T ss_pred             CccCCc-----CC---hhHhcCCCCCEEECcCCCCcCc----CChHHhCC-CCCcEEECCCCeeEe
Confidence            544432     22   2233344445555555544432    23333331 234444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.81  E-value=7.1e-20  Score=202.51  Aligned_cols=247  Identities=21%  Similarity=0.219  Sum_probs=189.5

Q ss_pred             cCCceeeeehhhh----------c-cccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCcc
Q 012930          151 CDYSKLSYHCQQF----------G-HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLA  219 (453)
Q Consensus       151 ~~l~~l~l~~~~~----------~-~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~  219 (453)
                      ..++.|.++.+.+          . ..++.|+++++....... ....++|++|+|++|.+......    .+.++++|+
T Consensus        93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~~~~p~----~~~~l~~L~  167 (968)
T PLN00113         93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLSGEIPN----DIGSFSSLK  167 (968)
T ss_pred             CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC-ccccCCCCEEECcCCcccccCCh----HHhcCCCCC
Confidence            5566666654422          1 157888888876653221 13457889999988886543322    256788999


Q ss_pred             EEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHH
Q 012930          220 SLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRM  299 (453)
Q Consensus       220 ~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~  299 (453)
                      +|+|++|.+.+..+..+..        +++|++|++++|.++.        .++..+..+++|++|+|++|.+.+..+..
T Consensus       168 ~L~L~~n~l~~~~p~~~~~--------l~~L~~L~L~~n~l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  231 (968)
T PLN00113        168 VLDLGGNVLVGKIPNSLTN--------LTSLEFLTLASNQLVG--------QIPRELGQMKSLKWIYLGYNNLSGEIPYE  231 (968)
T ss_pred             EEECccCcccccCChhhhh--------CcCCCeeeccCCCCcC--------cCChHHcCcCCccEEECcCCccCCcCChh
Confidence            9999999888777777765        5889999999998887        56777888999999999999988777766


Q ss_pred             HHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeC
Q 012930          300 VFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDI  379 (453)
Q Consensus       300 l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  379 (453)
                      +     ..+++|++|++++|.+++..+        ..++   .+++|++|++++|.+++    .+|..+..+++|+.|++
T Consensus       232 l-----~~l~~L~~L~L~~n~l~~~~p--------~~l~---~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L  291 (968)
T PLN00113        232 I-----GGLTSLNHLDLVYNNLTGPIP--------SSLG---NLKNLQYLFLYQNKLSG----PIPPSIFSLQKLISLDL  291 (968)
T ss_pred             H-----hcCCCCCEEECcCceeccccC--------hhHh---CCCCCCEEECcCCeeec----cCchhHhhccCcCEEEC
Confidence            5     347899999999999887544        6666   67899999999999876    47788888999999999


Q ss_pred             CCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930          380 SDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN  451 (453)
Q Consensus       380 s~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  451 (453)
                      ++|.+++.     +|   ..+..+++|+.|++++|.++..    ++..+..+ ++|+.|++++|.+++.+|.
T Consensus       292 s~n~l~~~-----~p---~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~p~  350 (968)
T PLN00113        292 SDNSLSGE-----IP---ELVIQLQNLEILHLFSNNFTGK----IPVALTSL-PRLQVLQLWSNKFSGEIPK  350 (968)
T ss_pred             cCCeeccC-----CC---hhHcCCCCCcEEECCCCccCCc----CChhHhcC-CCCCEEECcCCCCcCcCCh
Confidence            99998754     55   4467789999999999998875    55666664 5599999999999877664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.77  E-value=6e-21  Score=185.88  Aligned_cols=238  Identities=22%  Similarity=0.238  Sum_probs=167.6

Q ss_pred             hhcc-ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHh
Q 012930          162 QFGH-YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSL  240 (453)
Q Consensus       162 ~~~~-~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L  240 (453)
                      .|.. ++..++|+.|++.+.|..+...+++-.|+||+|.++.....+    +.++..|-.|+||+|++....|.. ..  
T Consensus        99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~l----finLtDLLfLDLS~NrLe~LPPQ~-RR--  171 (1255)
T KOG0444|consen   99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSL----FINLTDLLFLDLSNNRLEMLPPQI-RR--  171 (1255)
T ss_pred             hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchH----HHhhHhHhhhccccchhhhcCHHH-HH--
Confidence            4444 788899999999999999999999999999999965544333    556677888888888876443332 22  


Q ss_pred             hccccCCcceeEEEccCCCCCCCCchhhH-----------------HHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHH
Q 012930          241 CSKRKRIHKIENLSIDISSFIENCPSSVV-----------------VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSS  303 (453)
Q Consensus       241 ~~~~~~~~~L~~L~L~~n~l~~~~~~~i~-----------------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  303 (453)
                            +..|++|.|++|.+......++|                 ..+|..+..+.+|..+||+.|.+.. .|..+.. 
T Consensus       172 ------L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~-  243 (1255)
T KOG0444|consen  172 ------LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYK-  243 (1255)
T ss_pred             ------HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhh-
Confidence                  35566666666665443333332                 1455566777888888888888865 6666533 


Q ss_pred             HhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCC
Q 012930          304 LLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT  383 (453)
Q Consensus       304 L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~  383 (453)
                          ..+|+.|+||+|.|+.         +....+   ...+|++|+|+.|+++.     +|.++..++.|+.|.+.+|+
T Consensus       244 ----l~~LrrLNLS~N~ite---------L~~~~~---~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  244 ----LRNLRRLNLSGNKITE---------LNMTEG---EWENLETLNLSRNQLTV-----LPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             ----hhhhheeccCcCceee---------eeccHH---HHhhhhhhccccchhcc-----chHHHhhhHHHHHHHhccCc
Confidence                6889999999999885         223444   34678888999998884     88888888899999888888


Q ss_pred             CChhHHH-------------------hHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930          384 IEDDGIR-------------------SLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN  444 (453)
Q Consensus       384 i~~~g~~-------------------~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  444 (453)
                      ++-+|+.                   .+.|   +.+..|.+|+.|.|++|.+-.     +++++.-+ ..|+.||+..|.
T Consensus       303 L~FeGiPSGIGKL~~Levf~aanN~LElVP---EglcRC~kL~kL~L~~NrLiT-----LPeaIHlL-~~l~vLDlreNp  373 (1255)
T KOG0444|consen  303 LTFEGIPSGIGKLIQLEVFHAANNKLELVP---EGLCRCVKLQKLKLDHNRLIT-----LPEAIHLL-PDLKVLDLRENP  373 (1255)
T ss_pred             ccccCCccchhhhhhhHHHHhhccccccCc---hhhhhhHHHHHhcccccceee-----chhhhhhc-CCcceeeccCCc
Confidence            8766531                   1123   456666777777777777655     57777664 347777777774

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.76  E-value=3.5e-20  Score=179.36  Aligned_cols=242  Identities=19%  Similarity=0.181  Sum_probs=120.2

Q ss_pred             ccceeccccccchHHHhhhhc-CCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCVEETCQLLR-ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~-~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      .++.++|+.|.+.+++..-+. ..++++|+|++|.++....+.    +.++.+|..|.|+.|.|+...+..+..      
T Consensus       150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~----F~~lnsL~tlkLsrNrittLp~r~Fk~------  219 (873)
T KOG4194|consen  150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH----FDSLNSLLTLKLSRNRITTLPQRSFKR------  219 (873)
T ss_pred             hhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc----ccccchheeeecccCcccccCHHHhhh------
Confidence            367778887777765544433 377888888888755443332    445557778888888877666666544      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                        +++|+.|+|..|.|..        .=...+.++++|+.|.|..|.+..     +-.+.+..+.++++|+|+.|++...
T Consensus       220 --L~~L~~LdLnrN~iri--------ve~ltFqgL~Sl~nlklqrN~I~k-----L~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  220 --LPKLESLDLNRNRIRI--------VEGLTFQGLPSLQNLKLQRNDISK-----LDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             --cchhhhhhccccceee--------ehhhhhcCchhhhhhhhhhcCccc-----ccCcceeeecccceeecccchhhhh
Confidence              4667777777776654        112334455555555555554322     1111122245555555555554421


Q ss_pred             ccc--c----------CcCchH-HhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHh
Q 012930          325 LSK--Y----------DRSGPL-FSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRS  391 (453)
Q Consensus       325 ~~~--~----------~~~~l~-~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~  391 (453)
                      ...  +          ..+++. -.+..+..+++|++|+|++|+|+.    .-+.++..+..|++|+|++|.|+.     
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~----l~~~sf~~L~~Le~LnLs~Nsi~~-----  355 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR----LDEGSFRVLSQLEELNLSHNSIDH-----  355 (873)
T ss_pred             hcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc----CChhHHHHHHHhhhhcccccchHH-----
Confidence            110  0          000000 011222234455555555555443    112244444455555555554443     


Q ss_pred             HHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930          392 LIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  446 (453)
Q Consensus       392 l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  446 (453)
                      +..   .++..+++|++|||++|.|+. .+++-+..+..+ ++|++|++.+|+|.
T Consensus       356 l~e---~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl-~~LrkL~l~gNqlk  405 (873)
T KOG4194|consen  356 LAE---GAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGL-PSLRKLRLTGNQLK  405 (873)
T ss_pred             HHh---hHHHHhhhhhhhcCcCCeEEE-EEecchhhhccc-hhhhheeecCceee
Confidence            122   234444566666666665443 122223333332 33666666666654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.72  E-value=3.1e-19  Score=172.88  Aligned_cols=230  Identities=23%  Similarity=0.185  Sum_probs=152.6

Q ss_pred             cceeccccccchHHHhhhhc-CCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          167 ARCLRLQNALCVEETCQLLR-ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       167 l~~l~L~~~~~~~~~~~l~~-~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      +-.+.|+.|..+.++...++ +++|+.|+|..|.+...-..    .+.++++|+.|.|..|+|....-.++-.       
T Consensus       199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l----tFqgL~Sl~nlklqrN~I~kL~DG~Fy~-------  267 (873)
T KOG4194|consen  199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL----TFQGLPSLQNLKLQRNDISKLDDGAFYG-------  267 (873)
T ss_pred             heeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh----hhcCchhhhhhhhhhcCcccccCcceee-------
Confidence            34444555555554444433 45555555555553322111    1345555555555555554332222222       


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                       +.++++|+|..|++..        .--..+-++.+|+.|+|++|.+..--++.+     ..+++|++|+|++|.|+.--
T Consensus       268 -l~kme~l~L~~N~l~~--------vn~g~lfgLt~L~~L~lS~NaI~rih~d~W-----sftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  268 -LEKMEHLNLETNRLQA--------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSW-----SFTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             -ecccceeecccchhhh--------hhcccccccchhhhhccchhhhheeecchh-----hhcccceeEeccccccccCC
Confidence             5788899999998876        333455688999999999999877666655     33689999999999998632


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHH-HHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  404 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~  404 (453)
                      +        ..+.   .+..|++|+|++|.++.     +.+ ++..+++|+.|||++|.|+..     +..-...+..++
T Consensus       334 ~--------~sf~---~L~~Le~LnLs~Nsi~~-----l~e~af~~lssL~~LdLr~N~ls~~-----IEDaa~~f~gl~  392 (873)
T KOG4194|consen  334 E--------GSFR---VLSQLEELNLSHNSIDH-----LAEGAFVGLSSLHKLDLRSNELSWC-----IEDAAVAFNGLP  392 (873)
T ss_pred             h--------hHHH---HHHHhhhhcccccchHH-----HHhhHHHHhhhhhhhcCcCCeEEEE-----Eecchhhhccch
Confidence            2        3333   56789999999999985     555 788999999999999987431     000003356679


Q ss_pred             CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      .|++|.|.+|+|....    -.++..+ ..|+.|||.+|.|-.
T Consensus       393 ~LrkL~l~gNqlk~I~----krAfsgl-~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  393 SLRKLRLTGNQLKSIP----KRAFSGL-EALEHLDLGDNAIAS  430 (873)
T ss_pred             hhhheeecCceeeecc----hhhhccC-cccceecCCCCccee
Confidence            9999999999987752    3355554 349999999998754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.72  E-value=2.3e-19  Score=174.92  Aligned_cols=230  Identities=22%  Similarity=0.185  Sum_probs=178.8

Q ss_pred             cceeccccccchH--HHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          167 ARCLRLQNALCVE--ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       167 l~~l~L~~~~~~~--~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      ++.+.+..|.++.  +|..++.+..|..||||+|++......+     .+-+++-.|+||+|.|....-..+..      
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L-----E~AKn~iVLNLS~N~IetIPn~lfin------  148 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL-----EYAKNSIVLNLSYNNIETIPNSLFIN------  148 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh-----hhhcCcEEEEcccCccccCCchHHHh------
Confidence            4555555555443  7888999999999999999976654432     45578899999999987543333333      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                        +..|-.|+|++|++..         +|..+..+..|+.|.|++|++.-...+.+     ..+++|++|.+++.+-+- 
T Consensus       149 --LtDLLfLDLS~NrLe~---------LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-----PsmtsL~vLhms~TqRTl-  211 (1255)
T KOG0444|consen  149 --LTDLLFLDLSNNRLEM---------LPPQIRRLSMLQTLKLSNNPLNHFQLRQL-----PSMTSLSVLHMSNTQRTL-  211 (1255)
T ss_pred             --hHhHhhhccccchhhh---------cCHHHHHHhhhhhhhcCCChhhHHHHhcC-----ccchhhhhhhcccccchh-
Confidence              3557789999999865         78888899999999999999876555554     346888999998876431 


Q ss_pred             ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930          325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  404 (453)
Q Consensus       325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~  404 (453)
                            ..+|..+.   .+.+|..+||+.|++..     +|+.+..+++|+.|+||+|+|+.-      .   ...+...
T Consensus       212 ------~N~Ptsld---~l~NL~dvDlS~N~Lp~-----vPecly~l~~LrrLNLS~N~iteL------~---~~~~~W~  268 (1255)
T KOG0444|consen  212 ------DNIPTSLD---DLHNLRDVDLSENNLPI-----VPECLYKLRNLRRLNLSGNKITEL------N---MTEGEWE  268 (1255)
T ss_pred             ------hcCCCchh---hhhhhhhccccccCCCc-----chHHHhhhhhhheeccCcCceeee------e---ccHHHHh
Confidence                  11335555   67899999999999994     899999999999999999999872      1   1123337


Q ss_pred             CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccccCC
Q 012930          405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANSG  453 (453)
Q Consensus       405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~~  453 (453)
                      +|++|+|+.|+++.     ++.+++++.+ |+.|.+.+|.++-+|+.||
T Consensus       269 ~lEtLNlSrNQLt~-----LP~avcKL~k-L~kLy~n~NkL~FeGiPSG  311 (1255)
T KOG0444|consen  269 NLETLNLSRNQLTV-----LPDAVCKLTK-LTKLYANNNKLTFEGIPSG  311 (1255)
T ss_pred             hhhhhccccchhcc-----chHHHhhhHH-HHHHHhccCcccccCCccc
Confidence            89999999999998     8999999655 9999999999999998776

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.66  E-value=9.2e-17  Score=150.44  Aligned_cols=47  Identities=26%  Similarity=0.413  Sum_probs=35.9

Q ss_pred             hhhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCCCCCccccccccccccCCchHHHHHHHhcccCCCCCCCCCch
Q 012930           18 PYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVD   97 (453)
Q Consensus        18 ~~~~~lp~~~~~~i~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~w~~~~~~~w~~~~~~~~~~~   97 (453)
                      .....||||++.++|+.|+-..+                            +|+++...+|..++          .+++.
T Consensus        70 ~~~~~LPpEl~lkvFS~LDtksl----------------------------~r~a~~c~~~n~~A----------lD~~~  111 (483)
T KOG4341|consen   70 SISRSLPPELLLKVFSMLDTKSL----------------------------CRAAQCCTMWNKLA----------LDGSC  111 (483)
T ss_pred             cccccCCHHHHHHHHHHHhHHHH----------------------------HHHHHHHHHhhhhh----------hcccc
Confidence            34456999999999999996666                            66777888895544          45688


Q ss_pred             hHHHH
Q 012930           98 WQQRY  102 (453)
Q Consensus        98 ~~~~~  102 (453)
                      |+...
T Consensus       112 ~q~id  116 (483)
T KOG4341|consen  112 WQHID  116 (483)
T ss_pred             ceeee
Confidence            88766

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=99.60  E-value=5.5e-14  Score=124.97  Aligned_cols=252  Identities=21%  Similarity=0.194  Sum_probs=188.7

Q ss_pred             HHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCC---CCChhHHHHH---HHHhhccccCCcceeEE
Q 012930          180 ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC---KLSPSFVEGI---CRSLCSKRKRIHKIENL  253 (453)
Q Consensus       180 ~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n---~l~~~~~~~l---~~~L~~~~~~~~~L~~L  253 (453)
                      ....+..+..+.+++||+|.+...-.......+.+-.+|+..+++.-   ...+..+..+   .++|..    |+.|+..
T Consensus        22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk----cp~l~~v   97 (388)
T COG5238          22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK----CPRLQKV   97 (388)
T ss_pred             HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhc----CCcceee
Confidence            45556667889999999999655433333344446688999888865   3334444433   333333    7999999


Q ss_pred             EccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhh--------CCCCCCEEEcCCCCCCCcc
Q 012930          254 SIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE--------ASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       254 ~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~--------~~~~L~~L~Ls~n~l~~~~  325 (453)
                      +|++|.|....    ++.+...+++-..|++|.|++|.+....-..|.++|++        +-+.|++.+...|++..- 
T Consensus        98 ~LSDNAfg~~~----~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng-  172 (388)
T COG5238          98 DLSDNAFGSEF----PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG-  172 (388)
T ss_pred             eccccccCccc----chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC-
Confidence            99999998843    44888999999999999999999876555556655543        346799999999997631 


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHH-HHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  404 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~  404 (453)
                         ...-....+.   +...|+++.+..|.|..+|++.+.- .+..+.+|+.|||..|-++..|...+..    ++...+
T Consensus       173 ---s~~~~a~~l~---sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~----al~~W~  242 (388)
T COG5238         173 ---SKELSAALLE---SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD----ALCEWN  242 (388)
T ss_pred             ---cHHHHHHHHH---hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH----Hhcccc
Confidence               1111122333   4478999999999999999988764 6778999999999999999999888874    467778


Q ss_pred             CccEEEccCCCCChhhHHHHHHHHhcC-CCCCcEEECcCCCCCcccc
Q 012930          405 PLVELYLENCELSGRGVSQLLDTLSTL-RRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~~~~~  450 (453)
                      .|+.|.+..|-++..|+..+...+... .++|..|-..+|.+.+.++
T Consensus       243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i  289 (388)
T COG5238         243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGII  289 (388)
T ss_pred             hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCcee
Confidence            899999999999999999988887653 4568889888888766543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.56  E-value=2.1e-15  Score=158.25  Aligned_cols=105  Identities=21%  Similarity=0.276  Sum_probs=64.3

Q ss_pred             CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhH
Q 012930          309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG  388 (453)
Q Consensus       309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  388 (453)
                      ++|+.|++++|.++.         +|..+.     ++|+.|++++|+|+.     +|..+  .++|+.|+|++|.|+.  
T Consensus       325 ~sL~~L~Ls~N~Lt~---------LP~~l~-----~sL~~L~Ls~N~L~~-----LP~~l--p~~L~~LdLs~N~Lt~--  381 (754)
T PRK15370        325 PGLKTLEAGENALTS---------LPASLP-----PELQVLDVSKNQITV-----LPETL--PPTITTLDVSRNALTN--  381 (754)
T ss_pred             ccceeccccCCcccc---------CChhhc-----CcccEEECCCCCCCc-----CChhh--cCCcCEEECCCCcCCC--
Confidence            456666666666654         233332     578888888888774     55544  2578888888888775  


Q ss_pred             HHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          389 IRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       389 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                          +|.   .+.  ..|+.|++++|+|+.. ...++..... ...+..|++.+|+|..
T Consensus       382 ----LP~---~l~--~sL~~LdLs~N~L~~L-P~sl~~~~~~-~~~l~~L~L~~Npls~  429 (754)
T PRK15370        382 ----LPE---NLP--AALQIMQASRNNLVRL-PESLPHFRGE-GPQPTRIIVEYNPFSE  429 (754)
T ss_pred             ----CCH---hHH--HHHHHHhhccCCcccC-chhHHHHhhc-CCCccEEEeeCCCccH
Confidence                442   122  3577888888887752 1112222222 2447888888888764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.52  E-value=5e-17  Score=151.33  Aligned_cols=220  Identities=22%  Similarity=0.245  Sum_probs=124.5

Q ss_pred             cceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccC
Q 012930          167 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR  246 (453)
Q Consensus       167 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~  246 (453)
                      +..+.+..+...+++..++....++.++.++|++......+     ....+|..++.++|.+..- +..+.+        
T Consensus        70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-----~s~~~l~~l~~s~n~~~el-~~~i~~--------  135 (565)
T KOG0472|consen   70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-----GSLISLVKLDCSSNELKEL-PDSIGR--------  135 (565)
T ss_pred             eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-----hhhhhhhhhhccccceeec-CchHHH--------
Confidence            44555666666667777777777777777777744433322     3445677777777765532 223333        


Q ss_pred             CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930          247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  326 (453)
Q Consensus       247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  326 (453)
                      +..++.++..+|++..         ++..+.++.+|..+++.+|++....+..+.      ++.|++||...|.++.   
T Consensus       136 ~~~l~dl~~~~N~i~s---------lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~------m~~L~~ld~~~N~L~t---  197 (565)
T KOG0472|consen  136 LLDLEDLDATNNQISS---------LPEDMVNLSKLSKLDLEGNKLKALPENHIA------MKRLKHLDCNSNLLET---  197 (565)
T ss_pred             Hhhhhhhhcccccccc---------CchHHHHHHHHHHhhccccchhhCCHHHHH------HHHHHhcccchhhhhc---
Confidence            3556677777777665         566666667777777777777664444431      3667777776666654   


Q ss_pred             ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCc
Q 012930          327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL  406 (453)
Q Consensus       327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L  406 (453)
                            +|..++   .+.+|..|+|+.|+|..     +| .|..|..|.+|+++.|+|.-      +|+  +-..++..+
T Consensus       198 ------lP~~lg---~l~~L~~LyL~~Nki~~-----lP-ef~gcs~L~Elh~g~N~i~~------lpa--e~~~~L~~l  254 (565)
T KOG0472|consen  198 ------LPPELG---GLESLELLYLRRNKIRF-----LP-EFPGCSLLKELHVGENQIEM------LPA--EHLKHLNSL  254 (565)
T ss_pred             ------CChhhc---chhhhHHHHhhhccccc-----CC-CCCccHHHHHHHhcccHHHh------hHH--HHhcccccc
Confidence                  445555   44556666666665553     44 34555555555555555543      332  223344555


Q ss_pred             cEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          407 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       407 ~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      ..|||..|++++     ++..+..+ ++|.+||+|+|.|++
T Consensus       255 ~vLDLRdNklke-----~Pde~clL-rsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  255 LVLDLRDNKLKE-----VPDEICLL-RSLERLDLSNNDISS  289 (565)
T ss_pred             eeeecccccccc-----CchHHHHh-hhhhhhcccCCcccc
Confidence            555555555554     34444442 335555555555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.51  E-value=1.9e-15  Score=140.86  Aligned_cols=243  Identities=21%  Similarity=0.174  Sum_probs=161.9

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .+.++++..+....+| ++.+|..|++|.+..|.+..    +-....++++++..|||..|++.. .|..+|.       
T Consensus       207 ~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~----lpae~~~~L~~l~vLDLRdNklke-~Pde~cl-------  273 (565)
T KOG0472|consen  207 SLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEM----LPAEHLKHLNSLLVLDLRDNKLKE-VPDEICL-------  273 (565)
T ss_pred             hhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHh----hHHHHhcccccceeeecccccccc-CchHHHH-------
Confidence            3666777777777666 67777777777777776333    333335688899999999999984 4455554       


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCCh-------hHHHHHHHHHhhC-----------
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR-------DFGRMVFSSLLEA-----------  307 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~-------~~~~~l~~~L~~~-----------  307 (453)
                       +++|++|++++|.++.         ++..++++ .|+.|-+.||++..       .+...+.+++...           
T Consensus       274 -LrsL~rLDlSNN~is~---------Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~  342 (565)
T KOG0472|consen  274 -LRSLERLDLSNNDISS---------LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG  342 (565)
T ss_pred             -hhhhhhhcccCCcccc---------CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence             5889999999999886         77777788 88888888887632       1222333333220           


Q ss_pred             ------------------CCCCCEE--------------------------EcCCCCCCCcccc---------------c
Q 012930          308 ------------------SSSLSIL--------------------------DLSGNSIGGWLSK---------------Y  328 (453)
Q Consensus       308 ------------------~~~L~~L--------------------------~Ls~n~l~~~~~~---------------~  328 (453)
                                        +.+.+.|                          +++.|++...-..               -
T Consensus       343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn  422 (565)
T KOG0472|consen  343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN  422 (565)
T ss_pred             cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC
Confidence                              0012333                          3333333210000               0


Q ss_pred             CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChh--------HHHhHHHH-----
Q 012930          329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD--------GIRSLIPY-----  395 (453)
Q Consensus       329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~--------g~~~l~~~-----  395 (453)
                      ..+..|..+.   .+++|..|+|++|.+.+     +|..++.+.+|++||+|.|+|...        +...++..     
T Consensus       423 ~isfv~~~l~---~l~kLt~L~L~NN~Ln~-----LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~  494 (565)
T KOG0472|consen  423 KISFVPLELS---QLQKLTFLDLSNNLLND-----LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIG  494 (565)
T ss_pred             ccccchHHHH---hhhcceeeecccchhhh-----cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccccc
Confidence            0111344555   56899999999999996     899899998999999999987531        11111100     


Q ss_pred             -H-HhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930          396 -F-VQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  446 (453)
Q Consensus       396 -l-~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  446 (453)
                       + ...+.++.+|..|||.+|.|..     ++..++. ..+|++|++++|+|.
T Consensus       495 ~vd~~~l~nm~nL~tLDL~nNdlq~-----IPp~Lgn-mtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  495 SVDPSGLKNMRNLTTLDLQNNDLQQ-----IPPILGN-MTNLRHLELDGNPFR  541 (565)
T ss_pred             ccChHHhhhhhhcceeccCCCchhh-----CChhhcc-ccceeEEEecCCccC
Confidence             0 0236677899999999999877     6888988 477999999999997

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.50  E-value=1.1e-14  Score=152.84  Aligned_cols=32  Identities=16%  Similarity=0.070  Sum_probs=14.2

Q ss_pred             cceeccccccchHHHhhhhcCCCccEEEeccccC
Q 012930          167 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRF  200 (453)
Q Consensus       167 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~  200 (453)
                      ++.|++++|.+..++..+.  .+|+.|++++|.+
T Consensus       201 L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L  232 (754)
T PRK15370        201 ITTLILDNNELKSLPENLQ--GNIKTLYANSNQL  232 (754)
T ss_pred             CcEEEecCCCCCcCChhhc--cCCCEEECCCCcc
Confidence            4444444444444433322  2455555555443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.49  E-value=4.5e-14  Score=147.54  Aligned_cols=208  Identities=19%  Similarity=0.178  Sum_probs=119.6

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.|++++|.+..++..   .++|++|++++|.+.....        ...+|+.|++++|+++... ..          
T Consensus       243 ~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~--------lp~~L~~L~Ls~N~Lt~LP-~~----------  300 (788)
T PRK15387        243 ELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTSLP-VL----------  300 (788)
T ss_pred             CCcEEEecCCccCcccCc---ccccceeeccCCchhhhhh--------chhhcCEEECcCCcccccc-cc----------
Confidence            566677777766655431   2566777777766432111        1135666666666665321 10          


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                       .++|+.|++++|+++....      +      ..+|+.|++++|.++. .+. +       ..+|+.|+|++|+|+.. 
T Consensus       301 -p~~L~~LdLS~N~L~~Lp~------l------p~~L~~L~Ls~N~L~~-LP~-l-------p~~Lq~LdLS~N~Ls~L-  357 (788)
T PRK15387        301 -PPGLQELSVSDNQLASLPA------L------PSELCKLWAYNNQLTS-LPT-L-------PSGLQELSVSDNQLASL-  357 (788)
T ss_pred             -ccccceeECCCCccccCCC------C------cccccccccccCcccc-ccc-c-------ccccceEecCCCccCCC-
Confidence             2557777777776654110      1      1234444455554433 221 0       13455555555555431 


Q ss_pred             cccC---------cC---chHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHH
Q 012930          326 SKYD---------RS---GPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLI  393 (453)
Q Consensus       326 ~~~~---------~~---~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~  393 (453)
                      |...         ..   .+|.      ...+|+.|++++|+|+.     +|..   .++|+.|++++|.|+.      +
T Consensus       358 P~lp~~L~~L~Ls~N~L~~LP~------l~~~L~~LdLs~N~Lt~-----LP~l---~s~L~~LdLS~N~Lss------I  417 (788)
T PRK15387        358 PTLPSELYKLWAYNNRLTSLPA------LPSGLKELIVSGNRLTS-----LPVL---PSELKELMVSGNRLTS------L  417 (788)
T ss_pred             CCCCcccceehhhccccccCcc------cccccceEEecCCcccC-----CCCc---ccCCCEEEccCCcCCC------C
Confidence            1000         00   0111      12468888888888875     4432   3578889999998876      5


Q ss_pred             HHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          394 PYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       394 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      |.+   .   ..|+.|++++|+|+.     ++..+..+ ..|+.|+|++|+|++..+
T Consensus       418 P~l---~---~~L~~L~Ls~NqLt~-----LP~sl~~L-~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        418 PML---P---SGLLSLSVYRNQLTR-----LPESLIHL-SSETTVNLEGNPLSERTL  462 (788)
T ss_pred             Ccc---h---hhhhhhhhccCcccc-----cChHHhhc-cCCCeEECCCCCCCchHH
Confidence            521   1   468889999999986     67777774 559999999999987644

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=99.49  E-value=4.8e-15  Score=147.96  Aligned_cols=241  Identities=25%  Similarity=0.272  Sum_probs=199.0

Q ss_pred             ccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhH
Q 012930          190 LQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV  269 (453)
Q Consensus       190 L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~  269 (453)
                      +..|.|.+|.+...............++|+.|++++|.+++.+...+++.+..+.   +.+++|.+..|.++..++.   
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~---~~l~~L~l~~c~l~~~g~~---  162 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQ---CLLQTLELVSCSLTSEGAA---  162 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccch---HHHHHHHhhcccccccchH---
Confidence            7778888888776666666666677889999999999999999999999988852   7888999999999998877   


Q ss_pred             HHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhh---CCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc-
Q 012930          270 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE---ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS-  345 (453)
Q Consensus       270 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~---~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~-  345 (453)
                       .+.+.+..+..++.++++.|.+...+...++.++..   ..+++++|++++|.++.    ..|..+...+...   +. 
T Consensus       163 -~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~----~~c~~l~~~l~~~---~~~  234 (478)
T KOG4308|consen  163 -PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTS----SSCALLDEVLASG---ESL  234 (478)
T ss_pred             -HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcCh----HHHHHHHHHHhcc---chh
Confidence             777778788999999999999887788888888875   67889999999999883    4455566666643   44 


Q ss_pred             ccEEEecCCCCChhhHHHHHHHHhCC-CCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHH
Q 012930          346 LRLLNLRGNNLCKADARDLGSALVHI-PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL  424 (453)
Q Consensus       346 L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l  424 (453)
                      +..|++..|.+.+.|++.+.+.+..+ +.++.++++.|.|++.|+..+.    +.+..++.++.+.+++|.+++.++..+
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~----~~l~~~~~l~~l~l~~n~l~~~~~~~~  310 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA----EVLVSCRQLEELSLSNNPLTDYGVELL  310 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH----HHHhhhHHHHHhhcccCccccHHHHHH
Confidence            67799999999999999999999888 7899999999999999988887    446667899999999999999999999


Q ss_pred             HHHHhcCCCCCcEEECcCCCCCccc
Q 012930          425 LDTLSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       425 ~~~l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                      .+.+.. ...+..+-+.++.....+
T Consensus       311 ~~~l~~-~~~~~~~~l~~~~~~~~~  334 (478)
T KOG4308|consen  311 LEALER-KTPLLHLVLGGTGKGTRG  334 (478)
T ss_pred             HHHhhh-cccchhhhccccCccchh
Confidence            998888 455777777766655443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=99.49  E-value=9.8e-13  Score=117.07  Aligned_cols=231  Identities=16%  Similarity=0.155  Sum_probs=182.1

Q ss_pred             HHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHH---HHHHhhcCCCCc
Q 012930          206 ALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV---ELVSFLSSGRSL  282 (453)
Q Consensus       206 ~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~---~l~~~l~~~~~L  282 (453)
                      ..+..+.. +..+++++||+|-|+.+.+..+|+.+...    .+|+..++++- +++.....++.   .+..++.+||.|
T Consensus        21 ~v~eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~----~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l   94 (388)
T COG5238          21 GVVEELEM-MDELVEVDLSGNTIGTEAMEELCNVIANV----RNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRL   94 (388)
T ss_pred             HHHHHHHh-hcceeEEeccCCcccHHHHHHHHHHHhhh----cceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcc
Confidence            33333343 67999999999999999999999988875    77887777653 33323233333   345677899999


Q ss_pred             cEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhc------CCCCCCcccEEEecCCCC
Q 012930          283 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG------AGKSLQSLRLLNLRGNNL  356 (453)
Q Consensus       283 ~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~------~~~~~~~L~~L~L~~n~l  356 (453)
                      +..+||+|.+....+..+...+.+ .+.|++|.+++|.++-    ..++.+..++.      .-.+-+.|++.....|++
T Consensus        95 ~~v~LSDNAfg~~~~e~L~d~is~-~t~l~HL~l~NnGlGp----~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          95 QKVDLSDNAFGSEFPEELGDLISS-STDLVHLKLNNNGLGP----IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             eeeeccccccCcccchHHHHHHhc-CCCceeEEeecCCCCc----cchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            999999999998888888776655 5999999999998873    33333433222      112457899999999998


Q ss_pred             ChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCc
Q 012930          357 CKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPT  436 (453)
Q Consensus       357 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~  436 (453)
                      ..-.++..+..+..-..|.++.+..|.|..+|+..++-   ..+.++.+|+.|+|..|-+|..|...++.+++. .+.|+
T Consensus       170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~---~gl~y~~~LevLDlqDNtft~~gS~~La~al~~-W~~lr  245 (388)
T COG5238         170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAF---LGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE-WNLLR  245 (388)
T ss_pred             ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHH---HHHHHhCcceeeeccccchhhhhHHHHHHHhcc-cchhh
Confidence            87666677777776679999999999999999998875   457778999999999999999999999999999 55589


Q ss_pred             EEECcCCCCCccccc
Q 012930          437 SLSIADNNLGRFCAN  451 (453)
Q Consensus       437 ~L~Ls~N~l~~~~~~  451 (453)
                      .|.+..|-++..|.+
T Consensus       246 EL~lnDClls~~G~~  260 (388)
T COG5238         246 ELRLNDCLLSNEGVK  260 (388)
T ss_pred             hccccchhhccccHH
Confidence            999999998887764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.46  E-value=1.1e-14  Score=148.54  Aligned_cols=227  Identities=19%  Similarity=0.170  Sum_probs=126.8

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHH------------------HhcCCCccEEEcCCCC
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLL------------------IQNSETLASLEFLHCK  227 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l------------------~~~~~~L~~L~L~~n~  227 (453)
                      ++.+++++.+....++.++..+.+|+.++..+|.+.....++....                  ......|++|+|..|+
T Consensus       242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence            4667777777777777777777777777777777644333321110                  0113455555565555


Q ss_pred             CChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHH-hhcCCCCccEEEcCCCCCChhHHHHHHHHHhh
Q 012930          228 LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS-FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE  306 (453)
Q Consensus       228 l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~  306 (453)
                      |.......+...       ...+..|..+.|.+..         ++. .=..++.|+.|.+.+|.+++.....+     .
T Consensus       322 L~~lp~~~l~v~-------~~~l~~ln~s~n~l~~---------lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l-----~  380 (1081)
T KOG0618|consen  322 LPSLPDNFLAVL-------NASLNTLNVSSNKLST---------LPSYEENNHAALQELYLANNHLTDSCFPVL-----V  380 (1081)
T ss_pred             ccccchHHHhhh-------hHHHHHHhhhhccccc---------cccccchhhHHHHHHHHhcCcccccchhhh-----c
Confidence            543222111110       0112222222222221         000 00123456777777777777655544     3


Q ss_pred             CCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930          307 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       307 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  386 (453)
                      +...|+.|+|++|.+..         +|..  .+.++..|++|+|++|+++.     +|..+..++.|++|..-+|+|..
T Consensus       381 ~~~hLKVLhLsyNrL~~---------fpas--~~~kle~LeeL~LSGNkL~~-----Lp~tva~~~~L~tL~ahsN~l~~  444 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLNS---------FPAS--KLRKLEELEELNLSGNKLTT-----LPDTVANLGRLHTLRAHSNQLLS  444 (1081)
T ss_pred             cccceeeeeeccccccc---------CCHH--HHhchHHhHHHhcccchhhh-----hhHHHHhhhhhHHHhhcCCceee
Confidence            35677777777777664         2221  11256677777777777773     77777777777777777777765


Q ss_pred             hHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930          387 DGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN  444 (453)
Q Consensus       387 ~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  444 (453)
                            +|-    +..++.|+.+|++.|+|+...   ++++...  ++|++||++||.
T Consensus       445 ------fPe----~~~l~qL~~lDlS~N~L~~~~---l~~~~p~--p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  445 ------FPE----LAQLPQLKVLDLSCNNLSEVT---LPEALPS--PNLKYLDLSGNT  487 (1081)
T ss_pred             ------chh----hhhcCcceEEecccchhhhhh---hhhhCCC--cccceeeccCCc
Confidence                  552    445577777777777776642   3334332  447777777775

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=7.5e-14  Score=125.65  Aligned_cols=186  Identities=23%  Similarity=0.228  Sum_probs=133.8

Q ss_pred             CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCC-CCCCCCch
Q 012930          188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-SFIENCPS  266 (453)
Q Consensus       188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n-~l~~~~~~  266 (453)
                      +.||.||||...++..   ....+...|.+|+.|.|.++++.+.....+++        +.+|+.|+++.+ ++++.   
T Consensus       185 sRlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk--------N~~L~~lnlsm~sG~t~n---  250 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK--------NSNLVRLNLSMCSGFTEN---  250 (419)
T ss_pred             hhhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCcHHHHHHhc--------cccceeeccccccccchh---
Confidence            5689999988765433   23445778889999999999999888888887        588999999866 66663   


Q ss_pred             hhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCC--CCCcccccCcCchHHhhcCCCCCC
Q 012930          267 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS--IGGWLSKYDRSGPLFSLGAGKSLQ  344 (453)
Q Consensus       267 ~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~l~~~~~~~  344 (453)
                          ++.-.+.+|+.|..|+|+.|.+....+..++..+   ..+|..|+|+++.  +...       .+. .+.  +.|+
T Consensus       251 ----~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi---se~l~~LNlsG~rrnl~~s-------h~~-tL~--~rcp  313 (419)
T KOG2120|consen  251 ----ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI---SETLTQLNLSGYRRNLQKS-------HLS-TLV--RRCP  313 (419)
T ss_pred             ----HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh---chhhhhhhhhhhHhhhhhh-------HHH-HHH--HhCC
Confidence                3445567889999999999987766666665543   5678999999885  3221       121 222  2788


Q ss_pred             cccEEEecCC-CCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012930          345 SLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE  415 (453)
Q Consensus       345 ~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~  415 (453)
                      .|..|||++| .+++    .....+...+.|++|.++.|..-+       |.-.-.+...+.|.+|+..+|-
T Consensus       314 ~l~~LDLSD~v~l~~----~~~~~~~kf~~L~~lSlsRCY~i~-------p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  314 NLVHLDLSDSVMLKN----DCFQEFFKFNYLQHLSLSRCYDII-------PETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ceeeeccccccccCc----hHHHHHHhcchheeeehhhhcCCC-------hHHeeeeccCcceEEEEecccc
Confidence            9999999998 5666    356667788899999999886432       1111225666889999998883

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.45  E-value=7.5e-15  Score=149.79  Aligned_cols=204  Identities=23%  Similarity=0.266  Sum_probs=140.5

Q ss_pred             CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchh
Q 012930          188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  267 (453)
Q Consensus       188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~  267 (453)
                      .+|+.+++++|.+....     .+...+.+|+.++..+|.+. ..+..+..        ..+|+.|++..|.+..     
T Consensus       241 ~nl~~~dis~n~l~~lp-----~wi~~~~nle~l~~n~N~l~-~lp~ri~~--------~~~L~~l~~~~nel~y-----  301 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLP-----EWIGACANLEALNANHNRLV-ALPLRISR--------ITSLVSLSAAYNELEY-----  301 (1081)
T ss_pred             ccceeeecchhhhhcch-----HHHHhcccceEecccchhHH-hhHHHHhh--------hhhHHHHHhhhhhhhh-----
Confidence            67888888887754432     33556778888888888774 33333333        2667777777776654     


Q ss_pred             hHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHh---------------------hCCCCCCEEEcCCCCCCCccc
Q 012930          268 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL---------------------EASSSLSILDLSGNSIGGWLS  326 (453)
Q Consensus       268 i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~---------------------~~~~~L~~L~Ls~n~l~~~~~  326 (453)
                          ++..+...++|++|+|+.|++.. .|......+-                     ..++.|+.|.+.+|.+++.  
T Consensus       302 ----ip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~--  374 (1081)
T KOG0618|consen  302 ----IPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS--  374 (1081)
T ss_pred             ----CCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc--
Confidence                66677778899999999998865 4433221110                     0123366667777777763  


Q ss_pred             ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHH-HHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930          327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  405 (453)
Q Consensus       327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~  405 (453)
                               .+..+.+..+|++|+|++|+++.     +| ..+.+++.|++|+||+|+++.      +|   .....++.
T Consensus       375 ---------c~p~l~~~~hLKVLhLsyNrL~~-----fpas~~~kle~LeeL~LSGNkL~~------Lp---~tva~~~~  431 (1081)
T KOG0618|consen  375 ---------CFPVLVNFKHLKVLHLSYNRLNS-----FPASKLRKLEELEELNLSGNKLTT------LP---DTVANLGR  431 (1081)
T ss_pred             ---------chhhhccccceeeeeeccccccc-----CCHHHHhchHHhHHHhcccchhhh------hh---HHHHhhhh
Confidence                     22333366788999999998885     33 356678888899999998887      66   66777788


Q ss_pred             ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      |++|...+|+|..     ++ .+..++ .|+.+|+|+|+|+.
T Consensus       432 L~tL~ahsN~l~~-----fP-e~~~l~-qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  432 LHTLRAHSNQLLS-----FP-ELAQLP-QLKVLDLSCNNLSE  466 (1081)
T ss_pred             hHHHhhcCCceee-----ch-hhhhcC-cceEEecccchhhh
Confidence            9999999998887     56 445534 49999999999875

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=99.40  E-value=3.5e-14  Score=141.80  Aligned_cols=215  Identities=22%  Similarity=0.255  Sum_probs=187.1

Q ss_pred             ccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCC-CCccEEEcCCCCCChhH
Q 012930          218 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDF  296 (453)
Q Consensus       218 L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~-~~L~~L~L~~n~l~~~~  296 (453)
                      +..+.|.+|.+.+.+...+++++...    ..|+.|++++|.+.+.++.    .+...+... +.++.|++..|.+++.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~----~~L~~L~l~~n~l~~~g~~----~l~~~l~~~~~~l~~L~l~~c~l~~~g  160 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTL----PTLGQLDLSGNNLGDEGAR----LLCEGLRLPQCLLQTLELVSCSLTSEG  160 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhccc----ccHhHhhcccCCCccHhHH----HHHhhcccchHHHHHHHhhcccccccc
Confidence            88899999999999999999999985    8899999999999987776    677777776 78999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcC-CCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC-c
Q 012930          297 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA-GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN-L  374 (453)
Q Consensus       297 ~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L  374 (453)
                      ...+.+.+.. ...++.++++.|.+..    .+...++..+.. +....++++|++.+|.+++.+++.+..++...++ +
T Consensus       161 ~~~l~~~L~~-~~~l~~l~l~~n~l~~----~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~  235 (478)
T KOG4308|consen  161 AAPLAAVLEK-NEHLTELDLSLNGLIE----LGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLL  235 (478)
T ss_pred             hHHHHHHHhc-ccchhHHHHHhcccch----hhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhh
Confidence            9999999877 6999999999999874    333334455553 2346789999999999999999999999998887 8


Q ss_pred             cEEeCCCCCCChhHHHhHHHHHHhhcCCC-CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          375 EILDISDNTIEDDGIRSLIPYFVQASERC-NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       375 ~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      +.|+++.|.+.|.|++.+.|.+    ... +.++.++++.|.|++.|+..+++.+... +.++.++++.|.+++.+.
T Consensus       236 ~el~l~~n~l~d~g~~~L~~~l----~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~-~~l~~l~l~~n~l~~~~~  307 (478)
T KOG4308|consen  236 RELDLASNKLGDVGVEKLLPCL----SVLSETLRVLDLSRNSITEKGVRDLAEVLVSC-RQLEELSLSNNPLTDYGV  307 (478)
T ss_pred             HHHHHHhcCcchHHHHHHHHHh----cccchhhhhhhhhcCCccccchHHHHHHHhhh-HHHHHhhcccCccccHHH
Confidence            8899999999999999999864    333 7889999999999999999999999995 579999999999998754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.39  E-value=3.6e-14  Score=132.27  Aligned_cols=240  Identities=17%  Similarity=0.114  Sum_probs=157.2

Q ss_pred             ccccceeccccccchHHHhhhhc-CCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCC-CCCChhHHHHHHHHhh
Q 012930          164 GHYARCLRLQNALCVEETCQLLR-ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLC  241 (453)
Q Consensus       164 ~~~l~~l~L~~~~~~~~~~~l~~-~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~L~  241 (453)
                      +.....++|..|.++.+|...++ ..+|+.||||+|.++    .+.+..+.+++.|.+|-+.+ |+|++..-.++..   
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is----~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g---  138 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS----FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG---  138 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchh----hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh---
Confidence            34567788999999998877655 599999999999944    44455577778888887766 8999877777765   


Q ss_pred             ccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCC
Q 012930          242 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSI  321 (453)
Q Consensus       242 ~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l  321 (453)
                           +..++.|.+.-|++.-        ....++..+++|..|.+.+|.+..     |+++-+..+..++.+.+..|.+
T Consensus       139 -----L~slqrLllNan~i~C--------ir~~al~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  139 -----LSSLQRLLLNANHINC--------IRQDALRDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             -----HHHHHHHhcChhhhcc--------hhHHHHHHhhhcchhcccchhhhh-----hccccccchhccchHhhhcCcc
Confidence                 4778888888888876        677888899999999999987644     4443344567777777777762


Q ss_pred             -CCc-----------ccc-c------------------------CcC--chHHhh------------cCCCCCCcccEEE
Q 012930          322 -GGW-----------LSK-Y------------------------DRS--GPLFSL------------GAGKSLQSLRLLN  350 (453)
Q Consensus       322 -~~~-----------~~~-~------------------------~~~--~l~~~l------------~~~~~~~~L~~L~  350 (453)
                       .+.           .+. +                        .+.  .++..+            ..++.+++|+.|+
T Consensus       201 icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln  280 (498)
T KOG4237|consen  201 ICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN  280 (498)
T ss_pred             ccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence             110           000 0                        000  010000            0123556777777


Q ss_pred             ecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhc
Q 012930          351 LRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLST  430 (453)
Q Consensus       351 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  430 (453)
                      |++|+|+.    .-..+|.....+++|.|..|+|..      +..  ..+..+..|+.|+|.+|+||..    .+.++..
T Consensus       281 lsnN~i~~----i~~~aFe~~a~l~eL~L~~N~l~~------v~~--~~f~~ls~L~tL~L~~N~it~~----~~~aF~~  344 (498)
T KOG4237|consen  281 LSNNKITR----IEDGAFEGAAELQELYLTRNKLEF------VSS--GMFQGLSGLKTLSLYDNQITTV----APGAFQT  344 (498)
T ss_pred             cCCCccch----hhhhhhcchhhhhhhhcCcchHHH------HHH--HhhhccccceeeeecCCeeEEE----ecccccc
Confidence            77777775    234466677777777777777654      221  3355667777777777777765    3344444


Q ss_pred             CCCCCcEEECcCCCC
Q 012930          431 LRRPPTSLSIADNNL  445 (453)
Q Consensus       431 ~~~~L~~L~Ls~N~l  445 (453)
                      + .+|.+|.+-.|++
T Consensus       345 ~-~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  345 L-FSLSTLNLLSNPF  358 (498)
T ss_pred             c-ceeeeeehccCcc
Confidence            2 3467777766654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.39  E-value=3.4e-13  Score=141.03  Aligned_cols=154  Identities=16%  Similarity=0.074  Sum_probs=90.4

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.|.+.+|.+..++.   ..++|++|++++|+++....        ..++|+.|++++|.++... . +         
T Consensus       223 ~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~--------lp~sL~~L~Ls~N~L~~Lp-~-l---------  280 (788)
T PRK15387        223 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--------LPPGLLELSIFSNPLTHLP-A-L---------  280 (788)
T ss_pred             CCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccC--------cccccceeeccCCchhhhh-h-c---------
Confidence            46666677666665543   23677777777777553211        2356777777777665321 1 1         


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                       ..+|+.|++++|+++.         ++.   ..++|+.|+|++|++.. .+. +       ..+|+.|++++|.+++  
T Consensus       281 -p~~L~~L~Ls~N~Lt~---------LP~---~p~~L~~LdLS~N~L~~-Lp~-l-------p~~L~~L~Ls~N~L~~--  336 (788)
T PRK15387        281 -PSGLCKLWIFGNQLTS---------LPV---LPPGLQELSVSDNQLAS-LPA-L-------PSELCKLWAYNNQLTS--  336 (788)
T ss_pred             -hhhcCEEECcCCcccc---------ccc---cccccceeECCCCcccc-CCC-C-------cccccccccccCcccc--
Confidence             2456777777777765         222   23568888888887765 222 1       2467777888887764  


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  386 (453)
                             +|. +     ..+|+.|+|++|+|+.     +|..   .++|+.|++++|.|+.
T Consensus       337 -------LP~-l-----p~~Lq~LdLS~N~Ls~-----LP~l---p~~L~~L~Ls~N~L~~  376 (788)
T PRK15387        337 -------LPT-L-----PSGLQELSVSDNQLAS-----LPTL---PSELYKLWAYNNRLTS  376 (788)
T ss_pred             -------ccc-c-----ccccceEecCCCccCC-----CCCC---Ccccceehhhcccccc
Confidence                   221 1     1467888888888775     3321   2344555555555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.32  E-value=6.8e-15  Score=122.17  Aligned_cols=157  Identities=24%  Similarity=0.284  Sum_probs=95.1

Q ss_pred             cCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCC
Q 012930          214 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD  293 (453)
Q Consensus       214 ~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~  293 (453)
                      ++.+++.|.|+||+++ ..+..+++        +.+|+.|++.+|++.+         ++..+++++.|+.|++.-|++.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~--------l~nlevln~~nnqie~---------lp~~issl~klr~lnvgmnrl~   92 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAE--------LKNLEVLNLSNNQIEE---------LPTSISSLPKLRILNVGMNRLN   92 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHH--------hhhhhhhhcccchhhh---------cChhhhhchhhhheecchhhhh
Confidence            4456667777777776 45666665        4666777777776655         6666666777777777666554


Q ss_pred             hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC
Q 012930          294 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN  373 (453)
Q Consensus       294 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  373 (453)
                      - .|+.+     ...+.|+.|||++|++...       .+|..+-   .++.|+.|.|++|.+.     .+|..++.+.+
T Consensus        93 ~-lprgf-----gs~p~levldltynnl~e~-------~lpgnff---~m~tlralyl~dndfe-----~lp~dvg~lt~  151 (264)
T KOG0617|consen   93 I-LPRGF-----GSFPALEVLDLTYNNLNEN-------SLPGNFF---YMTTLRALYLGDNDFE-----ILPPDVGKLTN  151 (264)
T ss_pred             c-Ccccc-----CCCchhhhhhccccccccc-------cCCcchh---HHHHHHHHHhcCCCcc-----cCChhhhhhcc
Confidence            3 34433     2346667777776666532       1223332   3456666666666555     46666666677


Q ss_pred             ccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          374 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       374 L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      |+.|.++.|.+-.      +|   ..++.+..|++|++.+|.++.
T Consensus       152 lqil~lrdndll~------lp---keig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  152 LQILSLRDNDLLS------LP---KEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             eeEEeeccCchhh------Cc---HHHHHHHHHHHHhcccceeee
Confidence            7777776666544      44   445555666667777776655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=4.5e-13  Score=126.57  Aligned_cols=92  Identities=14%  Similarity=0.084  Sum_probs=45.9

Q ss_pred             hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCC
Q 012930          183 QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIE  262 (453)
Q Consensus       183 ~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~  262 (453)
                      ....+++++.||||+|-+.... . ...+...+|+|+.|+|+.|++....-...-..       ..+|+.|.++.|+++.
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~-~-v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~-------l~~lK~L~l~~CGls~  211 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWF-P-VLKIAEQLPSLENLNLSSNRLSNFISSNTTLL-------LSHLKQLVLNSCGLSW  211 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHH-H-HHHHHHhcccchhcccccccccCCccccchhh-------hhhhheEEeccCCCCH
Confidence            3445566677777666543321 1 22334566667777776665542211111111       2445556666665554


Q ss_pred             CCchhhHHHHHHhhcCCCCccEEEcCCC
Q 012930          263 NCPSSVVVELVSFLSSGRSLCSLKLRHC  290 (453)
Q Consensus       263 ~~~~~i~~~l~~~l~~~~~L~~L~L~~n  290 (453)
                      .       .+...+..+|+|+.|+|.+|
T Consensus       212 k-------~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  212 K-------DVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             H-------HHHHHHHhCCcHHHhhhhcc
Confidence            1       23334445555666666555

>PLN03210 Resistant to P

Probab=99.30  E-value=4.6e-12  Score=141.54  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=58.9

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.|++.++....+|..+ ...+|++|+++++.+...+..     ...+++|+.|+|++|......+. ++.       
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~-----~~~l~~Lk~L~Ls~~~~l~~ip~-ls~-------  655 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG-----VHSLTGLRNIDLRGSKNLKEIPD-LSM-------  655 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc-----cccCCCCCEEECCCCCCcCcCCc-ccc-------
Confidence            5777777777666666544 456777777777765443322     23566777777776632211111 211       


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCC
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH  291 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~  291 (453)
                       +++|++|++++|....        .++..+..+++|+.|++++|.
T Consensus       656 -l~~Le~L~L~~c~~L~--------~lp~si~~L~~L~~L~L~~c~  692 (1153)
T PLN03210        656 -ATNLETLKLSDCSSLV--------ELPSSIQYLNKLEDLDMSRCE  692 (1153)
T ss_pred             -CCcccEEEecCCCCcc--------ccchhhhccCCCCEEeCCCCC
Confidence             3566677776665433        355555566666666666653

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.23  E-value=3.5e-14  Score=117.99  Aligned_cols=160  Identities=21%  Similarity=0.231  Sum_probs=124.0

Q ss_pred             hhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCC
Q 012930          182 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFI  261 (453)
Q Consensus       182 ~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~  261 (453)
                      ..++.+.++..|.||+|++....+.+     ..+.+|+.|++.+|+|.+. +..+..        +++|+.|++.-|++.
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~vppni-----a~l~nlevln~~nnqie~l-p~~iss--------l~klr~lnvgmnrl~   92 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVVPPNI-----AELKNLEVLNLSNNQIEEL-PTSISS--------LPKLRILNVGMNRLN   92 (264)
T ss_pred             ccccchhhhhhhhcccCceeecCCcH-----HHhhhhhhhhcccchhhhc-Chhhhh--------chhhhheecchhhhh
Confidence            34566788889999999976654443     3567899999999988753 334433        578888888888876


Q ss_pred             CCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhH-HHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCC
Q 012930          262 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF-GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG  340 (453)
Q Consensus       262 ~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~  340 (453)
                      .         ++..++..+.|+.|||.+|++.... |..++.     +..|+-|.|+.|.+.-         +|..++  
T Consensus        93 ~---------lprgfgs~p~levldltynnl~e~~lpgnff~-----m~tlralyl~dndfe~---------lp~dvg--  147 (264)
T KOG0617|consen   93 I---------LPRGFGSFPALEVLDLTYNNLNENSLPGNFFY-----MTTLRALYLGDNDFEI---------LPPDVG--  147 (264)
T ss_pred             c---------CccccCCCchhhhhhccccccccccCCcchhH-----HHHHHHHHhcCCCccc---------CChhhh--
Confidence            5         7888889999999999999886533 332322     4678888999998764         667788  


Q ss_pred             CCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930          341 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       341 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  386 (453)
                       .+++|++|.++.|.+-.     +|..++.+..|++|++.+|+++-
T Consensus       148 -~lt~lqil~lrdndll~-----lpkeig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  148 -KLTNLQILSLRDNDLLS-----LPKEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             -hhcceeEEeeccCchhh-----CcHHHHHHHHHHHHhcccceeee
Confidence             67899999999998874     89999999999999999999875

>PLN03210 Resistant to P

Probab=99.21  E-value=2.1e-11  Score=136.27  Aligned_cols=230  Identities=20%  Similarity=0.221  Sum_probs=154.2

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .+..|++.++.+..++..+..+++|+.|+|+++......+.     +..+++|++|+|++|......+..+..       
T Consensus       612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~-------  679 (1153)
T PLN03210        612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQY-------  679 (1153)
T ss_pred             CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhc-------
Confidence            67888999888887777777889999999998752222222     346789999999998655455555544       


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                       +.+|+.|++++|....        .++..+ ++++|+.|++++|......+.        ...+|++|++++|.+...-
T Consensus       680 -L~~L~~L~L~~c~~L~--------~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~--------~~~nL~~L~L~~n~i~~lP  741 (1153)
T PLN03210        680 -LNKLEDLDMSRCENLE--------ILPTGI-NLKSLYRLNLSGCSRLKSFPD--------ISTNISWLDLDETAIEEFP  741 (1153)
T ss_pred             -cCCCCEEeCCCCCCcC--------ccCCcC-CCCCCCEEeCCCCCCcccccc--------ccCCcCeeecCCCcccccc
Confidence             5889999999875444        244333 678999999999965443432        1478999999999876411


Q ss_pred             cccCcCchH-------------HhhcC-----CCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCC-CCh
Q 012930          326 SKYDRSGPL-------------FSLGA-----GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT-IED  386 (453)
Q Consensus       326 ~~~~~~~l~-------------~~l~~-----~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~  386 (453)
                      .......+.             ..+..     ....++|+.|+|++|....    .+|..+..+++|+.|++++|. ++.
T Consensus       742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~----~lP~si~~L~~L~~L~Ls~C~~L~~  817 (1153)
T PLN03210        742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV----ELPSSIQNLHKLEHLEIENCINLET  817 (1153)
T ss_pred             ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc----ccChhhhCCCCCCEEECCCCCCcCe
Confidence            100000000             00000     0023578889999886444    478889999999999999864 554


Q ss_pred             hHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          387 DGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       387 ~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                            +|   ... .+++|++|++++|..-..    ++.    ...+|+.|+|++|.|+.
T Consensus       818 ------LP---~~~-~L~sL~~L~Ls~c~~L~~----~p~----~~~nL~~L~Ls~n~i~~  860 (1153)
T PLN03210        818 ------LP---TGI-NLESLESLDLSGCSRLRT----FPD----ISTNISDLNLSRTGIEE  860 (1153)
T ss_pred             ------eC---CCC-CccccCEEECCCCCcccc----ccc----cccccCEeECCCCCCcc
Confidence                  55   222 568999999999853221    222    23459999999999874

syringae 6; Provisional

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=9.8e-12  Score=117.65  Aligned_cols=222  Identities=21%  Similarity=0.183  Sum_probs=151.9

Q ss_pred             cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCCh-hHHHHHHHHhhccccCCcceeEEEccCCCCCCCC
Q 012930          186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIENC  264 (453)
Q Consensus       186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~-~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~  264 (453)
                      +..+|++..|.++........   .....+++++.|||++|-+.. ..+..+++.       +++|+.|+++.|.+..-.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eq-------Lp~Le~LNls~Nrl~~~~  188 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQ-------LPSLENLNLSSNRLSNFI  188 (505)
T ss_pred             hHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHh-------cccchhcccccccccCCc
Confidence            447788888877763332221   346789999999999997764 444556665       688999999999876521


Q ss_pred             chhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCC
Q 012930          265 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ  344 (453)
Q Consensus       265 ~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~  344 (453)
                      -....       ..+++|+.|.|+.|.++...+..+...    .++|+.|+|+.|.....-      ..+..     -++
T Consensus       189 ~s~~~-------~~l~~lK~L~l~~CGls~k~V~~~~~~----fPsl~~L~L~~N~~~~~~------~~~~~-----i~~  246 (505)
T KOG3207|consen  189 SSNTT-------LLLSHLKQLVLNSCGLSWKDVQWILLT----FPSLEVLYLEANEIILIK------ATSTK-----ILQ  246 (505)
T ss_pred             cccch-------hhhhhhheEEeccCCCCHHHHHHHHHh----CCcHHHhhhhccccccee------cchhh-----hhh
Confidence            11111       145789999999999998877776553    799999999999522110      01122     347


Q ss_pred             cccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHH
Q 012930          345 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL  424 (453)
Q Consensus       345 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l  424 (453)
                      .|++|||++|++-+.   ........++.|+.|+++.+.|++-..... .. ..-....++|++|++..|+|.+..   .
T Consensus       247 ~L~~LdLs~N~li~~---~~~~~~~~l~~L~~Lnls~tgi~si~~~d~-~s-~~kt~~f~kL~~L~i~~N~I~~w~---s  318 (505)
T KOG3207|consen  247 TLQELDLSNNNLIDF---DQGYKVGTLPGLNQLNLSSTGIASIAEPDV-ES-LDKTHTFPKLEYLNISENNIRDWR---S  318 (505)
T ss_pred             HHhhccccCCccccc---ccccccccccchhhhhccccCcchhcCCCc-cc-hhhhcccccceeeecccCcccccc---c
Confidence            899999999987763   233567789999999999998876210000 00 011345589999999999996631   3


Q ss_pred             HHHHhcCCCCCcEEECcCCCCCcc
Q 012930          425 LDTLSTLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       425 ~~~l~~~~~~L~~L~Ls~N~l~~~  448 (453)
                      ...+.. -.+|+.|.+.+|.|.-+
T Consensus       319 l~~l~~-l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  319 LNHLRT-LENLKHLRITLNYLNKE  341 (505)
T ss_pred             cchhhc-cchhhhhhccccccccc
Confidence            445555 34588888888888654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.14  E-value=1.1e-11  Score=116.00  Aligned_cols=213  Identities=20%  Similarity=0.183  Sum_probs=145.3

Q ss_pred             CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccC-CCCCCCCch
Q 012930          188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDI-SSFIENCPS  266 (453)
Q Consensus       188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~-n~l~~~~~~  266 (453)
                      ..-.+++|..|++....++.    ++.+++|++|+|++|.|+...+.++..        +.++.+|-+.+ |+|++    
T Consensus        67 ~~tveirLdqN~I~~iP~~a----F~~l~~LRrLdLS~N~Is~I~p~AF~G--------L~~l~~Lvlyg~NkI~~----  130 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGA----FKTLHRLRRLDLSKNNISFIAPDAFKG--------LASLLSLVLYGNNKITD----  130 (498)
T ss_pred             CcceEEEeccCCcccCChhh----ccchhhhceecccccchhhcChHhhhh--------hHhhhHHHhhcCCchhh----
Confidence            45677888888866554444    778899999999999999999999866        36666665555 88887    


Q ss_pred             hhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcc
Q 012930          267 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  346 (453)
Q Consensus       267 ~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L  346 (453)
                          .-...|.++.+|+.|.+..|++.-.....+     ..++++..|.+-.|.+...-         .  +.+..+..+
T Consensus       131 ----l~k~~F~gL~slqrLllNan~i~Cir~~al-----~dL~~l~lLslyDn~~q~i~---------~--~tf~~l~~i  190 (498)
T KOG4237|consen  131 ----LPKGAFGGLSSLQRLLLNANHINCIRQDAL-----RDLPSLSLLSLYDNKIQSIC---------K--GTFQGLAAI  190 (498)
T ss_pred             ----hhhhHhhhHHHHHHHhcChhhhcchhHHHH-----HHhhhcchhcccchhhhhhc---------c--ccccchhcc
Confidence                445677889999999999998876333333     33688999999888765311         0  111122333


Q ss_pred             cEEEecCCCC------------------ChhhH-------------------------HH---------------HHHHH
Q 012930          347 RLLNLRGNNL------------------CKADA-------------------------RD---------------LGSAL  368 (453)
Q Consensus       347 ~~L~L~~n~l------------------~~~~~-------------------------~~---------------l~~~l  368 (453)
                      +++.+..|.+                  .-.|+                         +.               -...|
T Consensus       191 ~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf  270 (498)
T KOG4237|consen  191 KTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF  270 (498)
T ss_pred             chHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHH
Confidence            3333333220                  00000                         00               12357


Q ss_pred             hCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930          369 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       369 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  448 (453)
                      ..+++|+.|+|++|+|++.     -+   .++.....+++|.|..|+|...    -...+..+ ..|+.|+|.+|+|+--
T Consensus       271 ~~L~~L~~lnlsnN~i~~i-----~~---~aFe~~a~l~eL~L~~N~l~~v----~~~~f~~l-s~L~tL~L~~N~it~~  337 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRI-----ED---GAFEGAAELQELYLTRNKLEFV----SSGMFQGL-SGLKTLSLYDNQITTV  337 (498)
T ss_pred             hhcccceEeccCCCccchh-----hh---hhhcchhhhhhhhcCcchHHHH----HHHhhhcc-ccceeeeecCCeeEEE
Confidence            7899999999999999872     33   5677778999999999998764    23334443 4499999999999754


Q ss_pred             c
Q 012930          449 C  449 (453)
Q Consensus       449 ~  449 (453)
                      .
T Consensus       338 ~  338 (498)
T KOG4237|consen  338 A  338 (498)
T ss_pred             e
Confidence            3

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=6.7e-11  Score=102.20  Aligned_cols=130  Identities=26%  Similarity=0.283  Sum_probs=46.5

Q ss_pred             CCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCC
Q 012930          278 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC  357 (453)
Q Consensus       278 ~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~  357 (453)
                      +...+++|+|++|.++.  .+.+    -..+.+|+.|++++|.|+..          ..+.   .++.|++|++++|+|+
T Consensus        17 n~~~~~~L~L~~n~I~~--Ie~L----~~~l~~L~~L~Ls~N~I~~l----------~~l~---~L~~L~~L~L~~N~I~   77 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST--IENL----GATLDKLEVLDLSNNQITKL----------EGLP---GLPRLKTLDLSNNRIS   77 (175)
T ss_dssp             ---------------------S------TT-TT--EEE-TTS--S------------TT-------TT--EEE--SS---
T ss_pred             ccccccccccccccccc--ccch----hhhhcCCCEEECCCCCCccc----------cCcc---ChhhhhhcccCCCCCC
Confidence            34567888888887764  1222    22356888888888888741          2233   5688888899999888


Q ss_pred             hhhHHHHHHHH-hCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCc
Q 012930          358 KADARDLGSAL-VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPT  436 (453)
Q Consensus       358 ~~~~~~l~~~l-~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~  436 (453)
                      +     +.+.+ ..+|+|++|++++|+|.+-+  .+     ..+..+++|+.|+|.+|+++...-.. ...+..+ ++|+
T Consensus        78 ~-----i~~~l~~~lp~L~~L~L~~N~I~~l~--~l-----~~L~~l~~L~~L~L~~NPv~~~~~YR-~~vi~~l-P~Lk  143 (175)
T PF14580_consen   78 S-----ISEGLDKNLPNLQELYLSNNKISDLN--EL-----EPLSSLPKLRVLSLEGNPVCEKKNYR-LFVIYKL-PSLK  143 (175)
T ss_dssp             S------CHHHHHH-TT--EEE-TTS---SCC--CC-----GGGGG-TT--EEE-TT-GGGGSTTHH-HHHHHH--TT-S
T ss_pred             c-----cccchHHhCCcCCEEECcCCcCCChH--Hh-----HHHHcCCCcceeeccCCcccchhhHH-HHHHHHc-Chhh
Confidence            6     43333 35788889999988887621  11     33566788889999998887643221 2233443 3488


Q ss_pred             EEEC
Q 012930          437 SLSI  440 (453)
Q Consensus       437 ~L~L  440 (453)
                      .||-
T Consensus       144 ~LD~  147 (175)
T PF14580_consen  144 VLDG  147 (175)
T ss_dssp             EETT
T ss_pred             eeCC
Confidence            8874

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=9.4e-11  Score=105.93  Aligned_cols=160  Identities=26%  Similarity=0.351  Sum_probs=84.4

Q ss_pred             CccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCC-CCChh
Q 012930          217 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRD  295 (453)
Q Consensus       217 ~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n-~l~~~  295 (453)
                      .|++|||+...|+...+..+...       |.+|+.|++.++++.+        .++..++.+.+|+.|+|+.+ .++..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~-------C~kLk~lSlEg~~LdD--------~I~~~iAkN~~L~~lnlsm~sG~t~n  250 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQ-------CSKLKNLSLEGLRLDD--------PIVNTIAKNSNLVRLNLSMCSGFTEN  250 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHH-------HHhhhhccccccccCc--------HHHHHHhccccceeeccccccccchh
Confidence            46666666666665555444332       5666666666666666        56666666666666666655 35544


Q ss_pred             HHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCC--CCChhhHHHHHHHHhCCCC
Q 012930          296 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN--NLCKADARDLGSALVHIPN  373 (453)
Q Consensus       296 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~  373 (453)
                      +++.+    +.+++.|..|+|+.|.+....    ...+...++     ++|+.|+|+++  ++.+.   ++......+|+
T Consensus       251 ~~~ll----~~scs~L~~LNlsWc~l~~~~----Vtv~V~his-----e~l~~LNlsG~rrnl~~s---h~~tL~~rcp~  314 (419)
T KOG2120|consen  251 ALQLL----LSSCSRLDELNLSWCFLFTEK----VTVAVAHIS-----ETLTQLNLSGYRRNLQKS---HLSTLVRRCPN  314 (419)
T ss_pred             HHHHH----HHhhhhHhhcCchHhhccchh----hhHHHhhhc-----hhhhhhhhhhhHhhhhhh---HHHHHHHhCCc
Confidence            44433    334566666666666554311    111112222     45666666666  34433   23333446666


Q ss_pred             ccEEeCCCC-CCChhHHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012930          374 LEILDISDN-TIEDDGIRSLIPYFVQASERCNPLVELYLENCE  415 (453)
Q Consensus       374 L~~L~Ls~N-~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~  415 (453)
                      |.+||||+| .+++.-+.+        +...+.|++|.++.|.
T Consensus       315 l~~LDLSD~v~l~~~~~~~--------~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  315 LVHLDLSDSVMLKNDCFQE--------FFKFNYLQHLSLSRCY  349 (419)
T ss_pred             eeeeccccccccCchHHHH--------HHhcchheeeehhhhc
Confidence            666666653 444432222        2233566666666664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.94  E-value=2.9e-11  Score=117.93  Aligned_cols=152  Identities=22%  Similarity=0.257  Sum_probs=81.7

Q ss_pred             cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930          248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  327 (453)
Q Consensus       248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  327 (453)
                      ..|+.+.+..|.+..         ++..+.++..|..|+|+.|+++- .|..+|.      .-|+.|-+++|+++.    
T Consensus        98 ~~Le~liLy~n~~r~---------ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~------lpLkvli~sNNkl~~----  157 (722)
T KOG0532|consen   98 VSLESLILYHNCIRT---------IPEAICNLEALTFLDLSSNQLSH-LPDGLCD------LPLKVLIVSNNKLTS----  157 (722)
T ss_pred             HHHHHHHHHhcccee---------cchhhhhhhHHHHhhhccchhhc-CChhhhc------CcceeEEEecCcccc----
Confidence            334555555555443         44555555666666666665544 4444433      345666666666553    


Q ss_pred             cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc
Q 012930          328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV  407 (453)
Q Consensus       328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~  407 (453)
                           +|..++   ...+|..||.+.|.+..     ++..++.+.+|+.|+++.|++.+      +|   +.+.. -.|.
T Consensus       158 -----lp~~ig---~~~tl~~ld~s~nei~s-----lpsql~~l~slr~l~vrRn~l~~------lp---~El~~-LpLi  214 (722)
T KOG0532|consen  158 -----LPEEIG---LLPTLAHLDVSKNEIQS-----LPSQLGYLTSLRDLNVRRNHLED------LP---EELCS-LPLI  214 (722)
T ss_pred             -----CCcccc---cchhHHHhhhhhhhhhh-----chHHhhhHHHHHHHHHhhhhhhh------CC---HHHhC-Ccee
Confidence                 344444   34555566666665553     55555555666666666665554      44   33332 2455


Q ss_pred             EEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930          408 ELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       408 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  448 (453)
                      +||+++|+++.     ++-.+.++ ++|++|-|.+|.++++
T Consensus       215 ~lDfScNkis~-----iPv~fr~m-~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  215 RLDFSCNKISY-----LPVDFRKM-RHLQVLQLENNPLQSP  249 (722)
T ss_pred             eeecccCceee-----cchhhhhh-hhheeeeeccCCCCCC
Confidence            66666666555     45555553 4466666666665553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.93  E-value=3.2e-10  Score=98.01  Aligned_cols=132  Identities=25%  Similarity=0.289  Sum_probs=46.8

Q ss_pred             cCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCC
Q 012930          214 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD  293 (453)
Q Consensus       214 ~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~  293 (453)
                      +...+++|+|++|.|+..  +.+...       +.+|+.|++++|.++.         + +.+..++.|+.|++++|.++
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~-------l~~L~~L~Ls~N~I~~---------l-~~l~~L~~L~~L~L~~N~I~   77 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGAT-------LDKLEVLDLSNNQITK---------L-EGLPGLPRLKTLDLSNNRIS   77 (175)
T ss_dssp             ---------------------S--TT--------TT--EEE-TTS--S------------TT----TT--EEE--SS---
T ss_pred             cccccccccccccccccc--cchhhh-------hcCCCEEECCCCCCcc---------c-cCccChhhhhhcccCCCCCC
Confidence            334667777777777642  222211       3567888888888775         2 23456788888888888887


Q ss_pred             hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC
Q 012930          294 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN  373 (453)
Q Consensus       294 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  373 (453)
                      .-. ..+.    ..+++|++|++++|+|.+..          .+..+..+++|++|+|.+|.+++..- .-...+..+|+
T Consensus        78 ~i~-~~l~----~~lp~L~~L~L~~N~I~~l~----------~l~~L~~l~~L~~L~L~~NPv~~~~~-YR~~vi~~lP~  141 (175)
T PF14580_consen   78 SIS-EGLD----KNLPNLQELYLSNNKISDLN----------ELEPLSSLPKLRVLSLEGNPVCEKKN-YRLFVIYKLPS  141 (175)
T ss_dssp             S-C-HHHH----HH-TT--EEE-TTS---SCC----------CCGGGGG-TT--EEE-TT-GGGGSTT-HHHHHHHH-TT
T ss_pred             ccc-cchH----HhCCcCCEEECcCCcCCChH----------HhHHHHcCCCcceeeccCCcccchhh-HHHHHHHHcCh
Confidence            622 2221    22578888888888887532          12333367888888888888775421 22345667888


Q ss_pred             ccEEeCC
Q 012930          374 LEILDIS  380 (453)
Q Consensus       374 L~~L~Ls  380 (453)
                      |+.||-.
T Consensus       142 Lk~LD~~  148 (175)
T PF14580_consen  142 LKVLDGQ  148 (175)
T ss_dssp             -SEETTE
T ss_pred             hheeCCE
Confidence            8888743

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.90  E-value=2.7e-09  Score=100.83  Aligned_cols=239  Identities=24%  Similarity=0.284  Sum_probs=133.9

Q ss_pred             ccceeccccccchH---HHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCC-CCChhHHHHHHHHhh
Q 012930          166 YARCLRLQNALCVE---ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLC  241 (453)
Q Consensus       166 ~l~~l~L~~~~~~~---~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~  241 (453)
                      +++.|.+.++.-.+   .......|++|+++++..|.  .........+...+++|++|++++| .|++.+++.+..+  
T Consensus       165 nIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~--~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG--  240 (483)
T KOG4341|consen  165 NIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS--SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG--  240 (483)
T ss_pred             chhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc--hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc--
Confidence            45555555543221   22223467889999998765  2234445667888999999999999 8888777777654  


Q ss_pred             ccccCCcceeEEEccCC---------------------------CCCCCCchhhHHHHHHhhcCCCCccEEEcCCCC-CC
Q 012930          242 SKRKRIHKIENLSIDIS---------------------------SFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LD  293 (453)
Q Consensus       242 ~~~~~~~~L~~L~L~~n---------------------------~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~-l~  293 (453)
                           +..++.+.+.+|                           .++++       .+...-..+..|+.|+.+++. ++
T Consensus       241 -----~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~-------~~~~i~~~c~~lq~l~~s~~t~~~  308 (483)
T KOG4341|consen  241 -----CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE-------DLWLIACGCHALQVLCYSSCTDIT  308 (483)
T ss_pred             -----chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch-------HHHHHhhhhhHhhhhcccCCCCCc
Confidence                 233344433332                           22321       222222344555555555542 22


Q ss_pred             hhHHHHHHHHHhhCCCCCCEEEcCCCC-CCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCC
Q 012930          294 RDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIP  372 (453)
Q Consensus       294 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  372 (453)
                      +.    ...+|..+..+|+.|.++.|+ +++.+.        ..++.  ++..|+.+++-.|.....+  .+...-.+++
T Consensus       309 d~----~l~aLg~~~~~L~~l~l~~c~~fsd~~f--------t~l~r--n~~~Le~l~~e~~~~~~d~--tL~sls~~C~  372 (483)
T KOG4341|consen  309 DE----VLWALGQHCHNLQVLELSGCQQFSDRGF--------TMLGR--NCPHLERLDLEECGLITDG--TLASLSRNCP  372 (483)
T ss_pred             hH----HHHHHhcCCCceEEEeccccchhhhhhh--------hhhhc--CChhhhhhcccccceehhh--hHhhhccCCc
Confidence            22    223334445666666666665 444322        22222  4566666666666433322  3444445677


Q ss_pred             CccEEeCCCC-CCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930          373 NLEILDISDN-TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN  444 (453)
Q Consensus       373 ~L~~L~Ls~N-~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  444 (453)
                      .|+.|.++++ .|+|+|++++-    ........|+.+.|++|..+.+   +..+.+.. ++.|+.+++-+++
T Consensus       373 ~lr~lslshce~itD~gi~~l~----~~~c~~~~l~~lEL~n~p~i~d---~~Le~l~~-c~~Leri~l~~~q  437 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLS----SSSCSLEGLEVLELDNCPLITD---ATLEHLSI-CRNLERIELIDCQ  437 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhh----hccccccccceeeecCCCCchH---HHHHHHhh-Ccccceeeeechh
Confidence            7777777776 46777766663    2234446777777777764433   25555655 4567777776654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.82  E-value=3.6e-09  Score=105.36  Aligned_cols=175  Identities=26%  Similarity=0.302  Sum_probs=91.2

Q ss_pred             CCccEEEcCCCCCChhHHHHHHHHhhccccCCc-ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCCh
Q 012930          216 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIH-KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR  294 (453)
Q Consensus       216 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~-~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~  294 (453)
                      +.++.|++.+|.++...+..-.         .. +|+.|++++|.+..         ++..+..+++|+.|++++|++.+
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~---------~~~nL~~L~l~~N~i~~---------l~~~~~~l~~L~~L~l~~N~l~~  177 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGL---------LKSNLKELDLSDNKIES---------LPSPLRNLPNLKNLDLSFNDLSD  177 (394)
T ss_pred             cceeEEecCCcccccCcccccc---------chhhcccccccccchhh---------hhhhhhccccccccccCCchhhh
Confidence            4566666666655543222110         12 56666666666554         33445566666666666666655


Q ss_pred             hHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCc
Q 012930          295 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL  374 (453)
Q Consensus       295 ~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  374 (453)
                       .+....     ..+.|+.|++++|++.+         +|..+.   ....|++|.+++|.+..     ++..+.....+
T Consensus       178 -l~~~~~-----~~~~L~~L~ls~N~i~~---------l~~~~~---~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l  234 (394)
T COG4886         178 -LPKLLS-----NLSNLNNLDLSGNKISD---------LPPEIE---LLSALEELDLSNNSIIE-----LLSSLSNLKNL  234 (394)
T ss_pred             -hhhhhh-----hhhhhhheeccCCcccc---------Cchhhh---hhhhhhhhhhcCCccee-----cchhhhhcccc
Confidence             222211     13566666666666654         333322   22346666666664322     34445555566


Q ss_pred             cEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          375 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       375 ~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      ..|.+++|++.+      .+   .....++.+++|++++|+++..     .. +.. -.+++.|++++|.+.+
T Consensus       235 ~~l~l~~n~~~~------~~---~~~~~l~~l~~L~~s~n~i~~i-----~~-~~~-~~~l~~L~~s~n~~~~  291 (394)
T COG4886         235 SGLELSNNKLED------LP---ESIGNLSNLETLDLSNNQISSI-----SS-LGS-LTNLRELDLSGNSLSN  291 (394)
T ss_pred             cccccCCceeee------cc---chhccccccceecccccccccc-----cc-ccc-cCccCEEeccCccccc
Confidence            666666666554      12   2244445566666666666652     21 333 2346666666665544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.81  E-value=1.2e-09  Score=99.00  Aligned_cols=129  Identities=24%  Similarity=0.288  Sum_probs=72.4

Q ss_pred             ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccccc
Q 012930          249 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  328 (453)
Q Consensus       249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~  328 (453)
                      .|+++++++|.|+.         +-+++.-.|.++.|++++|.+...  ..++     .+++|+.||||+|.++.     
T Consensus       285 ~LtelDLS~N~I~~---------iDESvKL~Pkir~L~lS~N~i~~v--~nLa-----~L~~L~~LDLS~N~Ls~-----  343 (490)
T KOG1259|consen  285 ELTELDLSGNLITQ---------IDESVKLAPKLRRLILSQNRIRTV--QNLA-----ELPQLQLLDLSGNLLAE-----  343 (490)
T ss_pred             hhhhccccccchhh---------hhhhhhhccceeEEeccccceeee--hhhh-----hcccceEeecccchhHh-----
Confidence            35666666666654         444444556667777777666431  1121     24666777777766552     


Q ss_pred             CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccE
Q 012930          329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE  408 (453)
Q Consensus       329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~  408 (453)
                             .-++-..+.++++|+|++|.|.+     + ..+..+.+|..||+++|+|..      +... ..+++++-|+.
T Consensus       344 -------~~Gwh~KLGNIKtL~La~N~iE~-----L-SGL~KLYSLvnLDl~~N~Ie~------ldeV-~~IG~LPCLE~  403 (490)
T KOG1259|consen  344 -------CVGWHLKLGNIKTLKLAQNKIET-----L-SGLRKLYSLVNLDLSSNQIEE------LDEV-NHIGNLPCLET  403 (490)
T ss_pred             -------hhhhHhhhcCEeeeehhhhhHhh-----h-hhhHhhhhheeccccccchhh------HHHh-cccccccHHHH
Confidence                   11222245566666676666654     2 234555666667777776654      2222 44566666666


Q ss_pred             EEccCCCCCh
Q 012930          409 LYLENCELSG  418 (453)
Q Consensus       409 L~L~~n~l~~  418 (453)
                      +.|.+|.|..
T Consensus       404 l~L~~NPl~~  413 (490)
T KOG1259|consen  404 LRLTGNPLAG  413 (490)
T ss_pred             HhhcCCCccc
Confidence            6666666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.79  E-value=1.2e-09  Score=98.88  Aligned_cols=128  Identities=21%  Similarity=0.206  Sum_probs=98.0

Q ss_pred             CCccEEEcCCCCCCh--hHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCC
Q 012930          216 ETLASLEFLHCKLSP--SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD  293 (453)
Q Consensus       216 ~~L~~L~L~~n~l~~--~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~  293 (453)
                      ..|+++||++|.|+.  ++++-           .+.++.|++++|.+..         +. .+..+++|++|||++|.++
T Consensus       284 q~LtelDLS~N~I~~iDESvKL-----------~Pkir~L~lS~N~i~~---------v~-nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKL-----------APKLRRLILSQNRIRT---------VQ-NLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hhhhhccccccchhhhhhhhhh-----------ccceeEEeccccceee---------eh-hhhhcccceEeecccchhH
Confidence            468899999998863  33332           3789999999999987         22 2668899999999999886


Q ss_pred             hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC
Q 012930          294 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN  373 (453)
Q Consensus       294 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  373 (453)
                      .      +.+.-..+.++++|.|++|.|.+-          ..++   .+-+|..||+++|+|..-+   -...++++|.
T Consensus       343 ~------~~Gwh~KLGNIKtL~La~N~iE~L----------SGL~---KLYSLvnLDl~~N~Ie~ld---eV~~IG~LPC  400 (490)
T KOG1259|consen  343 E------CVGWHLKLGNIKTLKLAQNKIETL----------SGLR---KLYSLVNLDLSSNQIEELD---EVNHIGNLPC  400 (490)
T ss_pred             h------hhhhHhhhcCEeeeehhhhhHhhh----------hhhH---hhhhheeccccccchhhHH---HhcccccccH
Confidence            5      222233468999999999998741          2334   5678999999999998632   2356889999


Q ss_pred             ccEEeCCCCCCCh
Q 012930          374 LEILDISDNTIED  386 (453)
Q Consensus       374 L~~L~Ls~N~i~~  386 (453)
                      |+++.|.+|++..
T Consensus       401 LE~l~L~~NPl~~  413 (490)
T KOG1259|consen  401 LETLRLTGNPLAG  413 (490)
T ss_pred             HHHHhhcCCCccc
Confidence            9999999998864

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.67  E-value=7.2e-10  Score=108.39  Aligned_cols=196  Identities=17%  Similarity=0.186  Sum_probs=147.3

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      +....+++.+...+++..+..+..|+.+.|..|.+......     ..++..|+.|+|+.|+++. .+..+|.       
T Consensus        76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-----i~~L~~lt~l~ls~NqlS~-lp~~lC~-------  142 (722)
T KOG0532|consen   76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-----ICNLEALTFLDLSSNQLSH-LPDGLCD-------  142 (722)
T ss_pred             chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-----hhhhhHHHHhhhccchhhc-CChhhhc-------
Confidence            34556777787777787777777888888888875443332     3466789999999998884 4555553       


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                        ..|+.|.+++|+++.         ++..++..++|.+|+.+.|.+.. .+..++.     +.+|+.|.+..|++.+  
T Consensus       143 --lpLkvli~sNNkl~~---------lp~~ig~~~tl~~ld~s~nei~s-lpsql~~-----l~slr~l~vrRn~l~~--  203 (722)
T KOG0532|consen  143 --LPLKVLIVSNNKLTS---------LPEEIGLLPTLAHLDVSKNEIQS-LPSQLGY-----LTSLRDLNVRRNHLED--  203 (722)
T ss_pred             --CcceeEEEecCcccc---------CCcccccchhHHHhhhhhhhhhh-chHHhhh-----HHHHHHHHHhhhhhhh--
Confidence              679999999999886         77778888899999999998876 5666544     5789999999999876  


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  405 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~  405 (453)
                             +|..+..    -.|..||++.|++..     ||-.|.+|..|++|-|.+|.++.--+..      ...+...-
T Consensus       204 -------lp~El~~----LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenNPLqSPPAqI------C~kGkVHI  261 (722)
T KOG0532|consen  204 -------LPEELCS----LPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENNPLQSPPAQI------CEKGKVHI  261 (722)
T ss_pred             -------CCHHHhC----CceeeeecccCceee-----cchhhhhhhhheeeeeccCCCCCChHHH------Hhccceee
Confidence                   6677763    368999999999994     8999999999999999999998632221      12333345


Q ss_pred             ccEEEccCCC
Q 012930          406 LVELYLENCE  415 (453)
Q Consensus       406 L~~L~L~~n~  415 (453)
                      .++|+..-|+
T Consensus       262 FKyL~~qA~q  271 (722)
T KOG0532|consen  262 FKYLSTQACQ  271 (722)
T ss_pred             eeeecchhcc
Confidence            5677776664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.65  E-value=1.6e-08  Score=100.70  Aligned_cols=193  Identities=28%  Similarity=0.301  Sum_probs=115.4

Q ss_pred             eccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcC-CCccEEEcCCCCCChhHHHHHHHHhhccccCCc
Q 012930          170 LRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNS-ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIH  248 (453)
Q Consensus       170 l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~-~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~  248 (453)
                      +.+..+....-...+...+.++.|++.+|.+......     .... ++|++|++++|.+.... ..+..        ++
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-----~~~~~~nL~~L~l~~N~i~~l~-~~~~~--------l~  163 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-----IGLLKSNLKELDLSDNKIESLP-SPLRN--------LP  163 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccccCccc-----cccchhhcccccccccchhhhh-hhhhc--------cc
Confidence            3444444322233333446677777777764433221     1222 26777888887776542 11111        47


Q ss_pred             ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccccc
Q 012930          249 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  328 (453)
Q Consensus       249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~  328 (453)
                      +|+.|++++|++++         ++......+.|+.|++++|++.+ .+..+     .....|++|.+++|.+..     
T Consensus       164 ~L~~L~l~~N~l~~---------l~~~~~~~~~L~~L~ls~N~i~~-l~~~~-----~~~~~L~~l~~~~N~~~~-----  223 (394)
T COG4886         164 NLKNLDLSFNDLSD---------LPKLLSNLSNLNNLDLSGNKISD-LPPEI-----ELLSALEELDLSNNSIIE-----  223 (394)
T ss_pred             cccccccCCchhhh---------hhhhhhhhhhhhheeccCCcccc-Cchhh-----hhhhhhhhhhhcCCccee-----
Confidence            77888888887776         44444466778888888887766 44332     113557888888874221     


Q ss_pred             CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccE
Q 012930          329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE  408 (453)
Q Consensus       329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~  408 (453)
                          .+..+.   .+.++..+.+.+|++..     ++..+..++.++.|++++|.+++      ++.    +....+++.
T Consensus       224 ----~~~~~~---~~~~l~~l~l~~n~~~~-----~~~~~~~l~~l~~L~~s~n~i~~------i~~----~~~~~~l~~  281 (394)
T COG4886         224 ----LLSSLS---NLKNLSGLELSNNKLED-----LPESIGNLSNLETLDLSNNQISS------ISS----LGSLTNLRE  281 (394)
T ss_pred             ----cchhhh---hcccccccccCCceeee-----ccchhccccccceeccccccccc------ccc----ccccCccCE
Confidence                112333   45666667777777664     35556677778888888888777      432    555677888


Q ss_pred             EEccCCCCCh
Q 012930          409 LYLENCELSG  418 (453)
Q Consensus       409 L~L~~n~l~~  418 (453)
                      |++++|.++.
T Consensus       282 L~~s~n~~~~  291 (394)
T COG4886         282 LDLSGNSLSN  291 (394)
T ss_pred             EeccCccccc
Confidence            8888776654

>PLN03150 hypothetical protein; Provisional

Probab=98.60  E-value=8.2e-08  Score=100.64  Aligned_cols=64  Identities=34%  Similarity=0.524  Sum_probs=30.1

Q ss_pred             CCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          343 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       343 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      +++|+.|+|++|.+.+    .+|..+..+++|+.|+|++|.++..     +|   ..++.+++|+.|+|++|+++.
T Consensus       441 L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~-----iP---~~l~~L~~L~~L~Ls~N~l~g  504 (623)
T PLN03150        441 LRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGS-----IP---ESLGQLTSLRILNLNGNSLSG  504 (623)
T ss_pred             CCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCC-----Cc---hHHhcCCCCCEEECcCCcccc
Confidence            3445555555554443    3444444555555555555554432     33   334444455555555554443

>PLN03150 hypothetical protein; Provisional

Probab=98.52  E-value=2.2e-07  Score=97.41  Aligned_cols=106  Identities=32%  Similarity=0.389  Sum_probs=60.9

Q ss_pred             eeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccC
Q 012930          250 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD  329 (453)
Q Consensus       250 L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~  329 (453)
                      ++.|+|++|.+..        .++..+..+++|+.|+|++|.+.+..+..+     ..+++|+.|+|++|.+++..|   
T Consensus       420 v~~L~L~~n~L~g--------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-----~~l~~L~~LdLs~N~lsg~iP---  483 (623)
T PLN03150        420 IDGLGLDNQGLRG--------FIPNDISKLRHLQSINLSGNSIRGNIPPSL-----GSITSLEVLDLSYNSFNGSIP---  483 (623)
T ss_pred             EEEEECCCCCccc--------cCCHHHhCCCCCCEEECCCCcccCcCChHH-----hCCCCCCEEECCCCCCCCCCc---
Confidence            5566666666655        455555566666666666666665555444     235666666666666665433   


Q ss_pred             cCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCC-CCccEEeCCCCC
Q 012930          330 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHI-PNLEILDISDNT  383 (453)
Q Consensus       330 ~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~N~  383 (453)
                           ..++   ++++|+.|+|++|+++.    .+|..+... .++..+++++|.
T Consensus       484 -----~~l~---~L~~L~~L~Ls~N~l~g----~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        484 -----ESLG---QLTSLRILNLNGNSLSG----RVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             -----hHHh---cCCCCCEEECcCCcccc----cCChHHhhccccCceEEecCCc
Confidence                 4454   45566666666666655    355555432 344556666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.44  E-value=1.3e-08  Score=102.28  Aligned_cols=156  Identities=26%  Similarity=0.293  Sum_probs=102.7

Q ss_pred             ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccccc
Q 012930          249 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  328 (453)
Q Consensus       249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~  328 (453)
                      .|...+.++|.+..         +-.++.-++.|++|+|+.|++++-  ..+     ..++.|++|||++|.+..     
T Consensus       165 ~L~~a~fsyN~L~~---------mD~SLqll~ale~LnLshNk~~~v--~~L-----r~l~~LkhLDlsyN~L~~-----  223 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL---------MDESLQLLPALESLNLSHNKFTKV--DNL-----RRLPKLKHLDLSYNCLRH-----  223 (1096)
T ss_pred             hHhhhhcchhhHHh---------HHHHHHHHHHhhhhccchhhhhhh--HHH-----Hhcccccccccccchhcc-----
Confidence            35555666776653         666777789999999999998762  222     337999999999999874     


Q ss_pred             CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccE
Q 012930          329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE  408 (453)
Q Consensus       329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~  408 (453)
                          +|. ++. .. +.|..|++++|.++.     + ..+.++.+|+.||+++|-|.+.  ..+-|     +..+..|..
T Consensus       224 ----vp~-l~~-~g-c~L~~L~lrnN~l~t-----L-~gie~LksL~~LDlsyNll~~h--seL~p-----LwsLs~L~~  283 (1096)
T KOG1859|consen  224 ----VPQ-LSM-VG-CKLQLLNLRNNALTT-----L-RGIENLKSLYGLDLSYNLLSEH--SELEP-----LWSLSSLIV  283 (1096)
T ss_pred             ----ccc-cch-hh-hhheeeeecccHHHh-----h-hhHHhhhhhhccchhHhhhhcc--hhhhH-----HHHHHHHHH
Confidence                222 111 13 359999999998885     2 3467788999999999988653  33433     444578999


Q ss_pred             EEccCCCCChh--hHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930          409 LYLENCELSGR--GVSQLLDTLSTLRRPPTSLSIADNNLG  446 (453)
Q Consensus       409 L~L~~n~l~~~--~~~~l~~~l~~~~~~L~~L~Ls~N~l~  446 (453)
                      |+|.+|.+-..  --.+.++.+.. +.-=..+-|.+-.|+
T Consensus       284 L~LeGNPl~c~p~hRaataqYl~~-~~a~~~f~LDgk~l~  322 (1096)
T KOG1859|consen  284 LWLEGNPLCCAPWHRAATAQYLHK-NSAPVKFKLDGKALG  322 (1096)
T ss_pred             HhhcCCccccCHHHHHHHHhHhcc-ccCCcceEecceecc
Confidence            99999987542  22334445543 222233444444443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=2.8e-07  Score=83.78  Aligned_cols=65  Identities=18%  Similarity=0.209  Sum_probs=33.5

Q ss_pred             CcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          344 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       344 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      +++..+-+..|.+.+..   -.+.....|++..|+|+.|+|.+      ..++ .++...+.|..|.++++.|.+
T Consensus       199 pnv~sv~v~e~PlK~~s---~ek~se~~p~~~~LnL~~~~ids------wasv-D~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTES---SEKGSEPFPSLSCLNLGANNIDS------WASV-DALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             ccchheeeecCcccchh---hcccCCCCCcchhhhhccccccc------HHHH-HHHcCCchhheeeccCCcccc
Confidence            45555555666555431   12234445555566666666654      2221 334455666666666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=1.2e-07  Score=86.10  Aligned_cols=170  Identities=17%  Similarity=0.161  Sum_probs=83.1

Q ss_pred             CCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCch
Q 012930          187 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  266 (453)
Q Consensus       187 ~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~  266 (453)
                      ++.++++||.+|.+.. |.+ +.++..++|.|+.|+|++|.+.... +.+       +.+..+|+.|.|++..+.-.   
T Consensus        70 ~~~v~elDL~~N~iSd-Wse-I~~ile~lP~l~~LNls~N~L~s~I-~~l-------p~p~~nl~~lVLNgT~L~w~---  136 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISD-WSE-IGAILEQLPALTTLNLSCNSLSSDI-KSL-------PLPLKNLRVLVLNGTGLSWT---  136 (418)
T ss_pred             hhhhhhhhcccchhcc-HHH-HHHHHhcCccceEeeccCCcCCCcc-ccC-------cccccceEEEEEcCCCCChh---
Confidence            3666677777766543 222 3344556677777777777665321 111       01135666666666655441   


Q ss_pred             hhHHHHHHhhcCCCCccEEEcCCCC-----CChhHHHHHHHH-------------------HhhCCCCCCEEEcCCCCCC
Q 012930          267 SVVVELVSFLSSGRSLCSLKLRHCH-----LDRDFGRMVFSS-------------------LLEASSSLSILDLSGNSIG  322 (453)
Q Consensus       267 ~i~~~l~~~l~~~~~L~~L~L~~n~-----l~~~~~~~l~~~-------------------L~~~~~~L~~L~Ls~n~l~  322 (453)
                          ...+++..+|.+++|+++.|.     +.+...+.+..+                   +..-.+++..+-+..|.+.
T Consensus       137 ----~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK  212 (418)
T KOG2982|consen  137 ----QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLK  212 (418)
T ss_pred             ----hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCccc
Confidence                233444555666666666652     122222111100                   0011233444444444433


Q ss_pred             CcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930          323 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       323 ~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  386 (453)
                      +....          .....++.+-.|+|+.|+|.+-+   -.+++..++.|+.|.+++|++.|
T Consensus       213 ~~s~e----------k~se~~p~~~~LnL~~~~idswa---svD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  213 TESSE----------KGSEPFPSLSCLNLGANNIDSWA---SVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             chhhc----------ccCCCCCcchhhhhcccccccHH---HHHHHcCCchhheeeccCCcccc
Confidence            21110          01113345556777777777642   23456677777777777777655

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.33  E-value=1.2e-08  Score=102.72  Aligned_cols=105  Identities=26%  Similarity=0.238  Sum_probs=51.1

Q ss_pred             CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhH
Q 012930          309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG  388 (453)
Q Consensus       309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  388 (453)
                      +.++.|||++|++++.          .++.   .|+.|++|||+.|.++.     +|..-..-..|+.|.+++|.++.  
T Consensus       187 ~ale~LnLshNk~~~v----------~~Lr---~l~~LkhLDlsyN~L~~-----vp~l~~~gc~L~~L~lrnN~l~t--  246 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKV----------DNLR---RLPKLKHLDLSYNCLRH-----VPQLSMVGCKLQLLNLRNNALTT--  246 (1096)
T ss_pred             HHhhhhccchhhhhhh----------HHHH---hcccccccccccchhcc-----ccccchhhhhheeeeecccHHHh--
Confidence            4556666666665531          2333   45566666666665553     33321112236666666665544  


Q ss_pred             HHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCC
Q 012930          389 IRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL  445 (453)
Q Consensus       389 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  445 (453)
                          +    ..+.++++|+.||+++|-|.+..--...-.+..    |+.|.|.||.+
T Consensus       247 ----L----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~----L~~L~LeGNPl  291 (1096)
T KOG1859|consen  247 ----L----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSS----LIVLWLEGNPL  291 (1096)
T ss_pred             ----h----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHH----HHHHhhcCCcc
Confidence                2    223444566666666665544322222222333    55566666654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.32  E-value=9.2e-08  Score=67.85  Aligned_cols=58  Identities=34%  Similarity=0.497  Sum_probs=29.0

Q ss_pred             cccEEEecCCCCChhhHHHHH-HHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012930          345 SLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE  415 (453)
Q Consensus       345 ~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~  415 (453)
                      +|++|++++|+++.     ++ .++..+++|+.|++++|.|+.      ++.  .++..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~-----i~~~~f~~l~~L~~L~l~~N~l~~------i~~--~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTE-----IPPDSFSNLPNLETLDLSNNNLTS------IPP--DAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESE-----ECTTTTTTGTTESEEEETSSSESE------EET--TTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCc-----cCHHHHcCCCCCCEeEccCCccCc------cCH--HHHcCCCCCCEEeCcCCc
Confidence            34555555555553     22 244455555555555555544      222  344555555555555554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.28  E-value=4.4e-08  Score=98.01  Aligned_cols=234  Identities=23%  Similarity=0.192  Sum_probs=129.4

Q ss_pred             ceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCC
Q 012930          168 RCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI  247 (453)
Q Consensus       168 ~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~  247 (453)
                      +.+.+..+........+....+|+.|++.+|.+......     ...+++|++|++++|.|+....-.-          +
T Consensus        75 ~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~i~~l~~----------l  139 (414)
T KOG0531|consen   75 KELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITKLEGLST----------L  139 (414)
T ss_pred             Hhhccchhhhhhhhcccccccceeeeeccccchhhcccc-----hhhhhcchheeccccccccccchhh----------c
Confidence            333345554444334456668888888888885443221     3456788888888888875332221          3


Q ss_pred             cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930          248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  327 (453)
Q Consensus       248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  327 (453)
                      +.|+.|++++|.+...          ..+..+..|+.+++++|.+.......+     ..+.+++.+++..|.+......
T Consensus       140 ~~L~~L~l~~N~i~~~----------~~~~~l~~L~~l~l~~n~i~~ie~~~~-----~~~~~l~~l~l~~n~i~~i~~~  204 (414)
T KOG0531|consen  140 TLLKELNLSGNLISDI----------SGLESLKSLKLLDLSYNRIVDIENDEL-----SELISLEELDLGGNSIREIEGL  204 (414)
T ss_pred             cchhhheeccCcchhc----------cCCccchhhhcccCCcchhhhhhhhhh-----hhccchHHHhccCCchhcccch
Confidence            5588888888887652          233347788888888888766333101     2357888888888876642110


Q ss_pred             cCcCchH------HhhcCCCC---CC--cccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHH
Q 012930          328 YDRSGPL------FSLGAGKS---LQ--SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYF  396 (453)
Q Consensus       328 ~~~~~l~------~~l~~~~~---~~--~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l  396 (453)
                      .....+.      ..+.....   ..  .|+.+++++|.+..     ++..+.....+..|+++.|++..      .   
T Consensus       205 ~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~-----~~~~~~~~~~l~~l~~~~n~~~~------~---  270 (414)
T KOG0531|consen  205 DLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR-----SPEGLENLKNLPVLDLSSNRISN------L---  270 (414)
T ss_pred             HHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccc-----ccccccccccccccchhhccccc------c---
Confidence            0000000      00010001   11  15666777776664     22445566677777777777655      2   


Q ss_pred             HhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          397 VQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       397 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                       ..+...+.+..+.+..+.+.......-...... ..+++.+.+..|.+..
T Consensus       271 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  271 -EGLERLPKLSELWLNDNKLALSEAISQEYITSA-APTLVTLTLELNPIRK  319 (414)
T ss_pred             -ccccccchHHHhccCcchhcchhhhhccccccc-cccccccccccCcccc
Confidence             123333556666666666553211111111333 3447777777776654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.27  E-value=3.5e-06  Score=86.08  Aligned_cols=218  Identities=22%  Similarity=0.187  Sum_probs=117.2

Q ss_pred             cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCC--CCChhH--HHHHHHHhhccccCCcceeEEEccCCC-C
Q 012930          186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC--KLSPSF--VEGICRSLCSKRKRIHKIENLSIDISS-F  260 (453)
Q Consensus       186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n--~l~~~~--~~~l~~~L~~~~~~~~~L~~L~L~~n~-l  260 (453)
                      .++.|+.|.+..+.......  ...+...++.|++|+++++  .+....  ...+...       +++|+.++++.+. +
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-------~~~L~~l~l~~~~~i  256 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSI-------CRKLKSLDLSGCGLV  256 (482)
T ss_pred             hCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhh-------cCCcCccchhhhhcc
Confidence            35777777777665221111  3334557778888888763  222222  2222222       5777888888776 6


Q ss_pred             CCCCchhhHHHHHHhhcCCCCccEEEcCCCC-CChhHHHHHHHHHhhCCCCCCEEEcCCCCCC-CcccccCcCchHHhhc
Q 012930          261 IENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIG-GWLSKYDRSGPLFSLG  338 (453)
Q Consensus       261 ~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~-~~~~~~~~~~l~~~l~  338 (453)
                      ++.+       +......|++|++|.+.+|. +++.+...+++.    ++.|++|+++.|... +.+       +.....
T Consensus       257 sd~~-------l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~----~~~L~~L~l~~c~~~~d~~-------l~~~~~  318 (482)
T KOG1947|consen  257 TDIG-------LSALASRCPNLETLSLSNCSNLTDEGLVSIAER----CPSLRELDLSGCHGLTDSG-------LEALLK  318 (482)
T ss_pred             Cchh-------HHHHHhhCCCcceEccCCCCccchhHHHHHHHh----cCcccEEeeecCccchHHH-------HHHHHH
Confidence            6632       22222347788888877776 677777776553    567888888877633 211       112222


Q ss_pred             CCCCCCcccEEEecCC----CCChhhHH---------HHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930          339 AGKSLQSLRLLNLRGN----NLCKADAR---------DLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  405 (453)
Q Consensus       339 ~~~~~~~L~~L~L~~n----~l~~~~~~---------~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~  405 (453)
                         +|++|+.|.+...    .+++.++.         .....+..++.++.+.+..+.+++.|...++       ..++.
T Consensus       319 ---~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l-------~gc~~  388 (482)
T KOG1947|consen  319 ---NCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSL-------RGCPN  388 (482)
T ss_pred             ---hCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHh-------cCCcc
Confidence               3444444433332    24443321         1122345677777777777766666654332       22222


Q ss_pred             --------------ccEEEccCCC-CChhhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930          406 --------------LVELYLENCE-LSGRGVSQLLDTLSTLRRPPTSLSIADNN  444 (453)
Q Consensus       406 --------------L~~L~L~~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  444 (453)
                                    ++.|+++.|. .+..++......    ...+..++++++.
T Consensus       389 l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~----~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  389 LTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADS----CSNLKDLDLSGCR  438 (482)
T ss_pred             cchHHHHHhccCCccceEecccCccccccchHHHhhh----hhccccCCccCcc
Confidence                          4677777764 455544433333    1236667766654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.24  E-value=2.8e-07  Score=65.30  Aligned_cols=61  Identities=34%  Similarity=0.464  Sum_probs=41.2

Q ss_pred             CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCC
Q 012930          309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI  384 (453)
Q Consensus       309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i  384 (453)
                      ++|++|++++|+++...+           ..+..+++|++|++++|.++.    .-+.++..+++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~-----------~~f~~l~~L~~L~l~~N~l~~----i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPP-----------DSFSNLPNLETLDLSNNNLTS----IPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECT-----------TTTTTGTTESEEEETSSSESE----EETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCH-----------HHHcCCCCCCEeEccCCccCc----cCHHHHcCCCCCCEEeCcCCcC
Confidence            357777788777765222           233366788888888887775    2234677788888888888764

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.21  E-value=3.9e-06  Score=85.69  Aligned_cols=224  Identities=22%  Similarity=0.265  Sum_probs=144.0

Q ss_pred             ccceeccccccchH---HHhhhhcCCCccEEEeccc-cChHHHHHHHHHHHhcCCCccEEEcCCCC-CChhHHHHHHHHh
Q 012930          166 YARCLRLQNALCVE---ETCQLLRESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSL  240 (453)
Q Consensus       166 ~l~~l~L~~~~~~~---~~~~l~~~~~L~~L~Ls~~-~~~~~~~~~~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~L  240 (453)
                      .++.+.+.++.-..   +......+++|++|+++++ ............+...+++|+.|+++++. +++.+...++.. 
T Consensus       189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~-  267 (482)
T KOG1947|consen  189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR-  267 (482)
T ss_pred             hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh-
Confidence            45556555542222   4455667899999999873 22122222223356677999999999997 999999999886 


Q ss_pred             hccccCCcceeEEEccCCC-CCCCCchhhHHHHHHhhcCCCCccEEEcCCCC-CChhHHHHHHHHHhhCCCCCCEEEcCC
Q 012930          241 CSKRKRIHKIENLSIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSG  318 (453)
Q Consensus       241 ~~~~~~~~~L~~L~L~~n~-l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~  318 (453)
                            |++|+.|.+..|. +++.       .+......+++|++|++++|. +++.+...+.    .++++++.|.+..
T Consensus       268 ------c~~L~~L~l~~c~~lt~~-------gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~----~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  268 ------CPNLETLSLSNCSNLTDE-------GLVSIAERCPSLRELDLSGCHGLTDSGLEALL----KNCPNLRELKLLS  330 (482)
T ss_pred             ------CCCcceEccCCCCccchh-------HHHHHHHhcCcccEEeeecCccchHHHHHHHH----HhCcchhhhhhhh
Confidence                  7899999988887 6763       456666688999999999995 4455555542    3367777766544


Q ss_pred             CC----CCCcccc---cCc-CchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC--------------ccE
Q 012930          319 NS----IGGWLSK---YDR-SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN--------------LEI  376 (453)
Q Consensus       319 n~----l~~~~~~---~~~-~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~--------------L~~  376 (453)
                      ..    +++....   ... ..+....  ..+++.++.+.+..+.+++.|..   ..+..++.              ++.
T Consensus       331 ~~~c~~l~~~~l~~~~~~~~d~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~---~~l~gc~~l~~~l~~~~~~~~~l~~  405 (482)
T KOG1947|consen  331 LNGCPSLTDLSLSGLLTLTSDDLAELI--LRSCPKLTDLSLSYCGISDLGLE---LSLRGCPNLTESLELRLCRSDSLRV  405 (482)
T ss_pred             cCCCccHHHHHHHHhhccCchhHhHHH--HhcCCCcchhhhhhhhccCcchH---HHhcCCcccchHHHHHhccCCccce
Confidence            43    3321100   000 0111211  23788999999999987765532   22334443              588


Q ss_pred             EeCCCCC-CChhHHHhHHHHHHhhcCCCCCccEEEccCCC-CChh
Q 012930          377 LDISDNT-IEDDGIRSLIPYFVQASERCNPLVELYLENCE-LSGR  419 (453)
Q Consensus       377 L~Ls~N~-i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~-l~~~  419 (453)
                      |+++.+. .++.++.....       .+..+..+++.++. ++..
T Consensus       406 L~l~~~~~~t~~~l~~~~~-------~~~~~~~l~~~~~~~~~~~  443 (482)
T KOG1947|consen  406 LNLSDCRLVTDKGLRCLAD-------SCSNLKDLDLSGCRVITLK  443 (482)
T ss_pred             EecccCccccccchHHHhh-------hhhccccCCccCcccccch
Confidence            9998865 56666555532       15788999999996 4544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.15  E-value=1.2e-07  Score=94.93  Aligned_cols=36  Identities=25%  Similarity=0.384  Sum_probs=24.6

Q ss_pred             ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      |+.+++++|.+...     ...+.. ...+..|+++.|.+..
T Consensus       234 L~~l~l~~n~i~~~-----~~~~~~-~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  234 LRELYLSGNRISRS-----PEGLEN-LKNLPVLDLSSNRISN  269 (414)
T ss_pred             HHHHhcccCccccc-----cccccc-cccccccchhhccccc
Confidence            77888888887762     134444 3448888888887754

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.14  E-value=3.8e-07  Score=73.67  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=18.0

Q ss_pred             cccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCC
Q 012930          345 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE  385 (453)
Q Consensus       345 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  385 (453)
                      .+++|+|++|.|.+     +|..+..++.|+.|+++.|++.
T Consensus        78 t~t~lNl~~neisd-----vPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   78 TATTLNLANNEISD-----VPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             hhhhhhcchhhhhh-----chHHHhhhHHhhhcccccCccc
Confidence            44455555555543     4444445555555555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.09  E-value=1.4e-05  Score=84.04  Aligned_cols=160  Identities=22%  Similarity=0.293  Sum_probs=99.2

Q ss_pred             cceeEEEccCCCCCCCCchhhHHHHHHhhc-CCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930          248 HKIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  326 (453)
Q Consensus       248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  326 (453)
                      .+|++|++++......       .++..++ .+|+|++|.+.+-.+...-...+|.    +.++|..||+|++.++..  
T Consensus       122 ~nL~~LdI~G~~~~s~-------~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~----sFpNL~sLDIS~TnI~nl--  188 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSN-------GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCA----SFPNLRSLDISGTNISNL--  188 (699)
T ss_pred             HhhhhcCccccchhhc-------cHHHHHhhhCcccceEEecCceecchhHHHHhh----ccCccceeecCCCCccCc--
Confidence            5677777776543221       3444444 4788888888887775544444544    468888888888888752  


Q ss_pred             ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCc
Q 012930          327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL  406 (453)
Q Consensus       327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L  406 (453)
                              .+++   ++++|++|.+++=.+....  .+ ..+..+++|+.||+|.....+.- +.+-.++ +.-..++.|
T Consensus       189 --------~GIS---~LknLq~L~mrnLe~e~~~--~l-~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYl-ec~~~LpeL  252 (699)
T KOG3665|consen  189 --------SGIS---RLKNLQVLSMRNLEFESYQ--DL-IDLFNLKKLRVLDISRDKNNDDT-KIIEQYL-ECGMVLPEL  252 (699)
T ss_pred             --------HHHh---ccccHHHHhccCCCCCchh--hH-HHHhcccCCCeeeccccccccch-HHHHHHH-HhcccCccc
Confidence                    4455   6678888888777666521  22 34557888888888876554422 1111122 445567888


Q ss_pred             cEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEC
Q 012930          407 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSI  440 (453)
Q Consensus       407 ~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L  440 (453)
                      +.||.++..++......+.+   . +++|+.+..
T Consensus       253 rfLDcSgTdi~~~~le~ll~---s-H~~L~~i~~  282 (699)
T KOG3665|consen  253 RFLDCSGTDINEEILEELLN---S-HPNLQQIAA  282 (699)
T ss_pred             cEEecCCcchhHHHHHHHHH---h-CccHhhhhh
Confidence            88888888877764333322   2 444555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.01  E-value=1.6e-05  Score=83.67  Aligned_cols=145  Identities=21%  Similarity=0.192  Sum_probs=100.7

Q ss_pred             CCccEEEecccc-ChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCch
Q 012930          188 SKLQSLVLRWIR-FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  266 (453)
Q Consensus       188 ~~L~~L~Ls~~~-~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~  266 (453)
                      .+|++|++++.. +...|.   ......+|.|++|.+++-.+.......+|..       .++|..||+++++++.    
T Consensus       122 ~nL~~LdI~G~~~~s~~W~---~kig~~LPsL~sL~i~~~~~~~~dF~~lc~s-------FpNL~sLDIS~TnI~n----  187 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWP---KKIGTMLPSLRSLVISGRQFDNDDFSQLCAS-------FPNLRSLDISGTNISN----  187 (699)
T ss_pred             HhhhhcCccccchhhccHH---HHHhhhCcccceEEecCceecchhHHHHhhc-------cCccceeecCCCCccC----
Confidence            789999998866 333332   3335677899999999887777767777765       5888999999998877    


Q ss_pred             hhHHHHHHhhcCCCCccEEEcCCCCCCh-hHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930          267 SVVVELVSFLSSGRSLCSLKLRHCHLDR-DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  345 (453)
Q Consensus       267 ~i~~~l~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~  345 (453)
                           + ..++++++|+.|.+.+=.+.. .....++     ++++|+.||+|.....+..     ..+-..+.....++.
T Consensus       188 -----l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF-----~L~~L~vLDIS~~~~~~~~-----~ii~qYlec~~~Lpe  251 (699)
T KOG3665|consen  188 -----L-SGISRLKNLQVLSMRNLEFESYQDLIDLF-----NLKKLRVLDISRDKNNDDT-----KIIEQYLECGMVLPE  251 (699)
T ss_pred             -----c-HHHhccccHHHHhccCCCCCchhhHHHHh-----cccCCCeeeccccccccch-----HHHHHHHHhcccCcc
Confidence                 2 566788899998888877654 2233332     3789999999988755321     112234444456788


Q ss_pred             ccEEEecCCCCChhhHH
Q 012930          346 LRLLNLRGNNLCKADAR  362 (453)
Q Consensus       346 L~~L~L~~n~l~~~~~~  362 (453)
                      |+.||.++..+.++-++
T Consensus       252 LrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  252 LRFLDCSGTDINEEILE  268 (699)
T ss_pred             ccEEecCCcchhHHHHH
Confidence            88888888888875433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.98  E-value=5.3e-06  Score=54.12  Aligned_cols=37  Identities=41%  Similarity=0.672  Sum_probs=22.7

Q ss_pred             cccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930          345 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       345 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  386 (453)
                      +|++|++++|+|++     ++..+..+++|+.|++++|+|++
T Consensus         2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence            46666666666664     55556666666666666666665

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.92  E-value=1.8e-06  Score=69.82  Aligned_cols=108  Identities=20%  Similarity=0.202  Sum_probs=81.1

Q ss_pred             CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHh-CCCCccEEeCCCCCCChh
Q 012930          309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALV-HIPNLEILDISDNTIEDD  387 (453)
Q Consensus       309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~N~i~~~  387 (453)
                      ..+..+||+.|.+..         ++.++..+.....|+..+|++|.+.+     .|+.+. ..+.++.|++++|.|++ 
T Consensus        27 kE~h~ldLssc~lm~---------i~davy~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neisd-   91 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMY---------IADAVYMLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEISD-   91 (177)
T ss_pred             HHhhhcccccchhhH---------HHHHHHHHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchhhhhh-
Confidence            456778888888764         33444444456788899999999886     666665 45689999999999999 


Q ss_pred             HHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCC
Q 012930          388 GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL  445 (453)
Q Consensus       388 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  445 (453)
                           +|   ..+..++.|+.|+++.|.+..     .++.+..+ .+|-.||..+|.+
T Consensus        92 -----vP---eE~Aam~aLr~lNl~~N~l~~-----~p~vi~~L-~~l~~Lds~~na~  135 (177)
T KOG4579|consen   92 -----VP---EELAAMPALRSLNLRFNPLNA-----EPRVIAPL-IKLDMLDSPENAR  135 (177)
T ss_pred             -----ch---HHHhhhHHhhhcccccCcccc-----chHHHHHH-HhHHHhcCCCCcc
Confidence                 77   557788999999999999887     35555442 3377788777764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.92  E-value=7.7e-06  Score=88.22  Aligned_cols=129  Identities=16%  Similarity=0.123  Sum_probs=91.1

Q ss_pred             cceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccC
Q 012930          167 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR  246 (453)
Q Consensus       167 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~  246 (453)
                      +++..+.++....++. -..+++|.+|-+.+|..  ....+...++..++.|..|||++|.=....|..+.+        
T Consensus       525 ~rr~s~~~~~~~~~~~-~~~~~~L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~--------  593 (889)
T KOG4658|consen  525 VRRMSLMNNKIEHIAG-SSENPKLRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE--------  593 (889)
T ss_pred             eeEEEEeccchhhccC-CCCCCccceEEEeecch--hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh--------
Confidence            4666666655543332 23446799999988762  233334445778899999999998665677777776        


Q ss_pred             CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCC
Q 012930          247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS  320 (453)
Q Consensus       247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~  320 (453)
                      +.+|++|+++++.+..         +|..+.+++.|.+|++..+.-....+..+     ..+++|++|.+-...
T Consensus       594 Li~LryL~L~~t~I~~---------LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~-----~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  594 LVHLRYLDLSDTGISH---------LPSGLGNLKKLIYLNLEVTGRLESIPGIL-----LELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhhhcccccCCCccc---------cchHHHHHHhhheeccccccccccccchh-----hhcccccEEEeeccc
Confidence            5889999999998876         88888899999999999886444232222     236899999887665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.76  E-value=3.3e-05  Score=50.35  Aligned_cols=38  Identities=39%  Similarity=0.502  Sum_probs=26.7

Q ss_pred             CCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          372 PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       372 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      ++|++|++++|+|++      +|   ..+.++++|+.|++++|+|++
T Consensus         1 ~~L~~L~l~~N~i~~------l~---~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITD------LP---PELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SS------HG---GHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcc------cC---chHhCCCCCCEEEecCCCCCC
Confidence            467888888888887      65   336777888888888887776

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.56  E-value=0.00022  Score=69.60  Aligned_cols=139  Identities=16%  Similarity=0.270  Sum_probs=84.5

Q ss_pred             HhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCC-
Q 012930          212 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-  290 (453)
Q Consensus       212 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n-  290 (453)
                      +..+.++++|++++|.++...  .+          ..+|+.|.+++|.-..        .++..+  .++|++|++++| 
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP--~L----------P~sLtsL~Lsnc~nLt--------sLP~~L--P~nLe~L~Ls~Cs  105 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP--VL----------PNELTEITIENCNNLT--------TLPGSI--PEGLEKLTVCHCP  105 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC--CC----------CCCCcEEEccCCCCcc--------cCCchh--hhhhhheEccCcc
Confidence            456689999999999777542  11          3679999998764322        122222  257899999988 


Q ss_pred             CCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCC-CChhhHHHHHHHHh
Q 012930          291 HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN-LCKADARDLGSALV  369 (453)
Q Consensus       291 ~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~  369 (453)
                      .+..     +       ..+|+.|+++.+.....          ..+.     ++|+.|.+.+++ ....   .++..  
T Consensus       106 ~L~s-----L-------P~sLe~L~L~~n~~~~L----------~~LP-----ssLk~L~I~~~n~~~~~---~lp~~--  153 (426)
T PRK15386        106 EISG-----L-------PESVRSLEIKGSATDSI----------KNVP-----NGLTSLSINSYNPENQA---RIDNL--  153 (426)
T ss_pred             cccc-----c-------ccccceEEeCCCCCccc----------ccCc-----chHhheecccccccccc---ccccc--
Confidence            4432     2       36788899887665421          1111     456777775433 1110   11211  


Q ss_pred             CCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012930          370 HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE  415 (453)
Q Consensus       370 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~  415 (453)
                      -.++|+.|++++|....      +|   ..+.  .+|+.|.++.|.
T Consensus       154 LPsSLk~L~Is~c~~i~------LP---~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        154 ISPSLKTLSLTGCSNII------LP---EKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             cCCcccEEEecCCCccc------Cc---cccc--ccCcEEEecccc
Confidence            12589999999887553      33   2233  689999988763

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.55  E-value=6.2e-05  Score=81.36  Aligned_cols=153  Identities=20%  Similarity=0.108  Sum_probs=91.3

Q ss_pred             CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCC--CChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCc
Q 012930          188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK--LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  265 (453)
Q Consensus       188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~--l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~  265 (453)
                      ...+...+-+|.+.....      ...++.|++|-+..|.  +.......+..        .+.|..|++++|.-..   
T Consensus       523 ~~~rr~s~~~~~~~~~~~------~~~~~~L~tLll~~n~~~l~~is~~ff~~--------m~~LrVLDLs~~~~l~---  585 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAG------SSENPKLRTLLLQRNSDWLLEISGEFFRS--------LPLLRVLDLSGNSSLS---  585 (889)
T ss_pred             hheeEEEEeccchhhccC------CCCCCccceEEEeecchhhhhcCHHHHhh--------CcceEEEECCCCCccC---
Confidence            455666666655322211      2355678888887775  34333333333        4778888888765444   


Q ss_pred             hhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930          266 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  345 (453)
Q Consensus       266 ~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~  345 (453)
                           .+|+.++.+-+|++|+|+++.+.. .|..+..     +..|.+||+..+.-....        +..+.   .+++
T Consensus       586 -----~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~-----Lk~L~~Lnl~~~~~l~~~--------~~i~~---~L~~  643 (889)
T KOG4658|consen  586 -----KLPSSIGELVHLRYLDLSDTGISH-LPSGLGN-----LKKLIYLNLEVTGRLESI--------PGILL---ELQS  643 (889)
T ss_pred             -----cCChHHhhhhhhhcccccCCCccc-cchHHHH-----HHhhheeccccccccccc--------cchhh---hccc
Confidence                 577788888888888888888774 6666633     577888888877533211        12222   4678


Q ss_pred             ccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCC
Q 012930          346 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISD  381 (453)
Q Consensus       346 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  381 (453)
                      |++|.+..-......  ..-..+..+.+|+.+....
T Consensus       644 Lr~L~l~~s~~~~~~--~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  644 LRVLRLPRSALSNDK--LLLKELENLEHLENLSITI  677 (889)
T ss_pred             ccEEEeeccccccch--hhHHhhhcccchhhheeec
Confidence            888888665422211  2333445666666665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=3.2e-05  Score=70.02  Aligned_cols=106  Identities=23%  Similarity=0.201  Sum_probs=70.4

Q ss_pred             CCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCCh
Q 012930          279 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK  358 (453)
Q Consensus       279 ~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~  358 (453)
                      +.+.+.|++-+|.+++.   .||+.    ++.|+.|.||-|+|+.             +..+..|++|++|.|+.|.|.+
T Consensus        18 l~~vkKLNcwg~~L~DI---sic~k----Mp~lEVLsLSvNkIss-------------L~pl~rCtrLkElYLRkN~I~s   77 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---SICEK----MPLLEVLSLSVNKISS-------------LAPLQRCTRLKELYLRKNCIES   77 (388)
T ss_pred             HHHhhhhcccCCCccHH---HHHHh----cccceeEEeecccccc-------------chhHHHHHHHHHHHHHhccccc
Confidence            34667788888888772   24443    6888888888888874             2333377888888888888876


Q ss_pred             hhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEE
Q 012930          359 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELY  410 (453)
Q Consensus       359 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~  410 (453)
                      -+   --..+.++|+|+.|.|..|+-..++...-=-   ..+..+++|+.||
T Consensus        78 ld---EL~YLknlpsLr~LWL~ENPCc~~ag~nYR~---~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   78 LD---ELEYLKNLPSLRTLWLDENPCCGEAGQNYRR---KVLRVLPNLKKLD  123 (388)
T ss_pred             HH---HHHHHhcCchhhhHhhccCCcccccchhHHH---HHHHHcccchhcc
Confidence            32   1245778888888888888765543321111   2244557777765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.24  E-value=0.00045  Score=59.95  Aligned_cols=110  Identities=24%  Similarity=0.235  Sum_probs=58.3

Q ss_pred             CCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChh
Q 012930          280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKA  359 (453)
Q Consensus       280 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~  359 (453)
                      .+...+||++|.+....       .+..+..|.+|.|++|+|+...+         .+..  -+++|+.|.|.+|+|..-
T Consensus        42 d~~d~iDLtdNdl~~l~-------~lp~l~rL~tLll~nNrIt~I~p---------~L~~--~~p~l~~L~LtnNsi~~l  103 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-------NLPHLPRLHTLLLNNNRITRIDP---------DLDT--FLPNLKTLILTNNSIQEL  103 (233)
T ss_pred             cccceecccccchhhcc-------cCCCccccceEEecCCcceeecc---------chhh--hccccceEEecCcchhhh
Confidence            35666677776553311       12335667777777777665332         2322  235566777777766642


Q ss_pred             hHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012930          360 DARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE  415 (453)
Q Consensus       360 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~  415 (453)
                      |  .+ .-+..+|.|+.|.+=+|++++..-.-.     -.+..+++|+.||.+.-.
T Consensus       104 ~--dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~-----yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  104 G--DL-DPLASCPKLEYLTLLGNPVEHKKNYRL-----YVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             h--hc-chhccCCccceeeecCCchhcccCcee-----EEEEecCcceEeehhhhh
Confidence            2  11 124466677777766676665321111     124555666666665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.24  E-value=0.00022  Score=69.56  Aligned_cols=57  Identities=12%  Similarity=0.135  Sum_probs=28.7

Q ss_pred             hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCC
Q 012930          184 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS  258 (453)
Q Consensus       184 l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n  258 (453)
                      +..+.+++.|++++|.+....        .--++|++|.+++|.--...+..+          ..+|++|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP--------~LP~sLtsL~Lsnc~nLtsLP~~L----------P~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP--------VLPNELTEITIENCNNLTTLPGSI----------PEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC--------CCCCCCcEEEccCCCCcccCCchh----------hhhhhheEccCc
Confidence            334466677777766533221        112357777776652212222222          245667777666

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=4.2e-05  Score=69.32  Aligned_cols=105  Identities=20%  Similarity=0.253  Sum_probs=78.3

Q ss_pred             CCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChh
Q 012930          308 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD  387 (453)
Q Consensus       308 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  387 (453)
                      +.+.+.|++.+|.++|.             +.+..++.|++|.|+-|+|+.     + ..+..|++|++|.|..|.|.+ 
T Consensus        18 l~~vkKLNcwg~~L~DI-------------sic~kMp~lEVLsLSvNkIss-----L-~pl~rCtrLkElYLRkN~I~s-   77 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-------------SICEKMPLLEVLSLSVNKISS-----L-APLQRCTRLKELYLRKNCIES-   77 (388)
T ss_pred             HHHhhhhcccCCCccHH-------------HHHHhcccceeEEeecccccc-----c-hhHHHHHHHHHHHHHhccccc-
Confidence            46788999999999872             233378999999999999996     3 347789999999999999987 


Q ss_pred             HHHhHHHHHHhhcCCCCCccEEEccCCCCChh-hHHHHHHHHhcCCCCCcEEE
Q 012930          388 GIRSLIPYFVQASERCNPLVELYLENCELSGR-GVSQLLDTLSTLRRPPTSLS  439 (453)
Q Consensus       388 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~l~~~~~~L~~L~  439 (453)
                           +.-+ .-+.++++|+.|.|..|.=... |-..=...+..+ ++|++||
T Consensus        78 -----ldEL-~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L-PnLkKLD  123 (388)
T KOG2123|consen   78 -----LDEL-EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL-PNLKKLD  123 (388)
T ss_pred             -----HHHH-HHHhcCchhhhHhhccCCcccccchhHHHHHHHHc-ccchhcc
Confidence                 3332 4478889999999999974433 333334455554 4488886

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=97.06  E-value=0.0014  Score=63.87  Aligned_cols=238  Identities=16%  Similarity=0.050  Sum_probs=125.5

Q ss_pred             CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCC-hhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCch
Q 012930          188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLS-PSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  266 (453)
Q Consensus       188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~-~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~  266 (453)
                      ..+.+++|+.|.....+..+....... -.++.++.+...+. +.....+..    ..  .++++..+++.|........
T Consensus       214 ~~lteldls~n~~Kddip~~~n~~a~~-~vl~~ld~s~tgirlD~l~~~l~~----g~--~tkl~~~kls~ng~s~skg~  286 (553)
T KOG4242|consen  214 LWLTELDLSTNGGKDDIPRTLNKKAGT-LVLFKLDRSTTGIRLDLLTSPLAA----GR--TTKLTFGKLSRNGTSPSKGE  286 (553)
T ss_pred             ccccccccccCCCCccchhHHHHhhhh-hhhhcccccccccchhhccccccc----cc--ccccchhhhccCCCCccccc
Confidence            456778888887666555554444433 25666676666443 122222211    11  25677777877776544333


Q ss_pred             hhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCC-CCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930          267 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSS-LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  345 (453)
Q Consensus       267 ~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~  345 (453)
                      .+...--+.++.-+++ +|++..+....+-+..+.-++..+-.. =-++|+..|...+.          .++..+.+=..
T Consensus       287 Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a----------~vleaci~g~R  355 (553)
T KOG4242|consen  287 EGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERA----------EVLEACIFGQR  355 (553)
T ss_pred             ccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhcccccc----------chhhcccccee
Confidence            3333555566666778 888888888777776664443333222 24567777665542          22222222245


Q ss_pred             ccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCC-C--CChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHH
Q 012930          346 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN-T--IEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVS  422 (453)
Q Consensus       346 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~--i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  422 (453)
                      +++|..+.|++..+|....  .+...++.+.++++.- .  +-+.+..+  +.....-....-+..+.++.|.+... ..
T Consensus       356 ~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a--~~v~k~~~~~g~l~el~ls~~~lka~-l~  430 (553)
T KOG4242|consen  356 VQVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEA--PPVSKKSRTHGVLAELSLSPGPLKAG-LE  430 (553)
T ss_pred             eeEeecccccccccccccc--ceeeccccccccccccCCceeccccccc--hhhhhhhcccccccCcccCCCccccc-HH
Confidence            8888888888877665433  4556667777776642 2  22211111  11101111223455566666655442 22


Q ss_pred             HHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930          423 QLLDTLSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       423 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                      .....+.. ++++.+|++++|.-++-+
T Consensus       431 s~in~l~s-tqtl~kldisgn~mgd~g  456 (553)
T KOG4242|consen  431 SAINKLLS-TQTLAKLDISGNGMGDGG  456 (553)
T ss_pred             HHHHhhcc-CcccccccccCCCcccCC
Confidence            23333333 345666666666555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.03  E-value=0.00019  Score=64.73  Aligned_cols=88  Identities=26%  Similarity=0.362  Sum_probs=56.3

Q ss_pred             CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhH
Q 012930          309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG  388 (453)
Q Consensus       309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  388 (453)
                      ..|+.|.+.+..++.             +..+..+++|+.|.++.|.+...+  .+......+|+|++|++++|+|.+  
T Consensus        43 ~~le~ls~~n~gltt-------------~~~~P~Lp~LkkL~lsdn~~~~~~--~l~vl~e~~P~l~~l~ls~Nki~~--  105 (260)
T KOG2739|consen   43 VELELLSVINVGLTT-------------LTNFPKLPKLKKLELSDNYRRVSG--GLEVLAEKAPNLKVLNLSGNKIKD--  105 (260)
T ss_pred             cchhhhhhhccceee-------------cccCCCcchhhhhcccCCcccccc--cceehhhhCCceeEEeecCCcccc--
Confidence            455555555555542             234446788999999999333221  233334566999999999998876  


Q ss_pred             HHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          389 IRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       389 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      +..+     ..+..+.+|..|++.+|..+.
T Consensus       106 lstl-----~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  106 LSTL-----RPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             cccc-----chhhhhcchhhhhcccCCccc
Confidence            2222     235566778889999986544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=0.00049  Score=59.71  Aligned_cols=69  Identities=29%  Similarity=0.327  Sum_probs=36.5

Q ss_pred             CCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCC-CCChhhHHHHHHHHhCCCCccEEeCCCC-CCChh
Q 012930          310 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDN-TIEDD  387 (453)
Q Consensus       310 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~  387 (453)
                      .++.+|-+++.|..           ..+..+..++.++.|.+.+| ++.+.+.+.+..   ..++|+.|++++| +||+.
T Consensus       102 ~IeaVDAsds~I~~-----------eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~  167 (221)
T KOG3864|consen  102 KIEAVDASDSSIMY-----------EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDG  167 (221)
T ss_pred             eEEEEecCCchHHH-----------HHHHHHhccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechh
Confidence            34555555555543           23333335556666666666 455555544443   3456666666655 46666


Q ss_pred             HHHhH
Q 012930          388 GIRSL  392 (453)
Q Consensus       388 g~~~l  392 (453)
                      |+..+
T Consensus       168 GL~~L  172 (221)
T KOG3864|consen  168 GLACL  172 (221)
T ss_pred             HHHHH
Confidence            65544

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=96.70  E-value=0.0026  Score=36.88  Aligned_cols=23  Identities=43%  Similarity=0.778  Sum_probs=13.5

Q ss_pred             CCccEEeCCCCCCChhHHHhHHH
Q 012930          372 PNLEILDISDNTIEDDGIRSLIP  394 (453)
Q Consensus       372 ~~L~~L~Ls~N~i~~~g~~~l~~  394 (453)
                      ++|+.|||++|.|+++|+.+++.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~   24 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAE   24 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHH
Confidence            35566666666666666655553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.56  E-value=0.0019  Score=56.12  Aligned_cols=129  Identities=22%  Similarity=0.277  Sum_probs=89.4

Q ss_pred             ccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhH
Q 012930          282 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA  361 (453)
Q Consensus       282 L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~  361 (453)
                      =++++|.+.++...  ..+    .....+...+||+.|.+..             +..+.+++.|.+|.|.+|+|+.   
T Consensus        21 e~e~~LR~lkip~i--enl----g~~~d~~d~iDLtdNdl~~-------------l~~lp~l~rL~tLll~nNrIt~---   78 (233)
T KOG1644|consen   21 ERELDLRGLKIPVI--ENL----GATLDQFDAIDLTDNDLRK-------------LDNLPHLPRLHTLLLNNNRITR---   78 (233)
T ss_pred             ccccccccccccch--hhc----cccccccceecccccchhh-------------cccCCCccccceEEecCCccee---
Confidence            46788888877652  122    2335678999999999874             2444478999999999999996   


Q ss_pred             HHHHHHHh-CCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEC
Q 012930          362 RDLGSALV-HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSI  440 (453)
Q Consensus       362 ~~l~~~l~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L  440 (453)
                        +.+.+. .++.|..|.|.+|.|..-|  .+     .-+..+++|++|.+-+|+++...-... -.+..+ ++|+.||.
T Consensus        79 --I~p~L~~~~p~l~~L~LtnNsi~~l~--dl-----~pLa~~p~L~~Ltll~Npv~~k~~YR~-yvl~kl-p~l~~LDF  147 (233)
T KOG1644|consen   79 --IDPDLDTFLPNLKTLILTNNSIQELG--DL-----DPLASCPKLEYLTLLGNPVEHKKNYRL-YVLYKL-PSLRTLDF  147 (233)
T ss_pred             --eccchhhhccccceEEecCcchhhhh--hc-----chhccCCccceeeecCCchhcccCcee-EEEEec-CcceEeeh
Confidence              555444 5678999999999886521  12     336777999999999998776322111 123343 45899988


Q ss_pred             cCC
Q 012930          441 ADN  443 (453)
Q Consensus       441 s~N  443 (453)
                      +.-
T Consensus       148 ~kV  150 (233)
T KOG1644|consen  148 QKV  150 (233)
T ss_pred             hhh
Confidence            654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.55  E-value=0.00098  Score=60.20  Aligned_cols=85  Identities=25%  Similarity=0.303  Sum_probs=50.8

Q ss_pred             CCCCccEEEcCCC--CCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCC
Q 012930          278 SGRSLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN  355 (453)
Q Consensus       278 ~~~~L~~L~L~~n--~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~  355 (453)
                      .+++|+.|.++.|  ++.. +...+++    .+++|++|+++.|+|...          ..+.-.+.+.+|.+|++.+|.
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~-~l~vl~e----~~P~l~~l~ls~Nki~~l----------stl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSG-GLEVLAE----KAPNLKVLNLSGNKIKDL----------STLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             CcchhhhhcccCCcccccc-cceehhh----hCCceeEEeecCCccccc----------cccchhhhhcchhhhhcccCC
Confidence            5678888888888  4444 2333333    357888888888887741          334444456778888888885


Q ss_pred             CChhhHHHHHHHHhCCCCccEEe
Q 012930          356 LCKADARDLGSALVHIPNLEILD  378 (453)
Q Consensus       356 l~~~~~~~l~~~l~~~~~L~~L~  378 (453)
                      .+...- .=-..+.-+++|..||
T Consensus       128 ~~~l~d-yre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  128 VTNLDD-YREKVFLLLPSLKYLD  149 (260)
T ss_pred             cccccc-HHHHHHHHhhhhcccc
Confidence            443110 1223445566666664

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=96.32  E-value=0.0062  Score=35.25  Aligned_cols=26  Identities=35%  Similarity=0.451  Sum_probs=22.9

Q ss_pred             CCccEEEccCCCCChhhHHHHHHHHh
Q 012930          404 NPLVELYLENCELSGRGVSQLLDTLS  429 (453)
Q Consensus       404 ~~L~~L~L~~n~l~~~~~~~l~~~l~  429 (453)
                      ++|++|+|++|.|++.|+..+++.+.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~L~   27 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEALK   27 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHHhc
Confidence            67999999999999999999888774

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.17  E-value=0.0027  Score=35.26  Aligned_cols=21  Identities=57%  Similarity=0.953  Sum_probs=9.5

Q ss_pred             CCccEEeCCCCCCChhHHHhH
Q 012930          372 PNLEILDISDNTIEDDGIRSL  392 (453)
Q Consensus       372 ~~L~~L~Ls~N~i~~~g~~~l  392 (453)
                      ++|++|+|++|+|+++|+.++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            345555555555555554443

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.57  E-value=0.0088  Score=33.16  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=15.8

Q ss_pred             CCCccEEEccCCCCChhhHHHHH
Q 012930          403 CNPLVELYLENCELSGRGVSQLL  425 (453)
Q Consensus       403 ~~~L~~L~L~~n~l~~~~~~~l~  425 (453)
                      +++|++|+|++|+|++.|+..++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            36788888888888888777664

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.49  E-value=0.0043  Score=54.01  Aligned_cols=59  Identities=36%  Similarity=0.320  Sum_probs=29.6

Q ss_pred             ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCC-CCChhHHHHHHHHHhhCCCCCCEEEcCCC
Q 012930          249 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGN  319 (453)
Q Consensus       249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n  319 (453)
                      .++.++-+++.|..        .-.+.+..+++++.|.+.+| ++.+.+.+.+..    ..++|+.|++++|
T Consensus       102 ~IeaVDAsds~I~~--------eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC  161 (221)
T KOG3864|consen  102 KIEAVDASDSSIMY--------EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGC  161 (221)
T ss_pred             eEEEEecCCchHHH--------HHHHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCC
Confidence            35555555555544        33444555666666666666 355544444322    1344444444444

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=94.87  E-value=0.026  Score=37.23  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=16.4

Q ss_pred             hccCchHHHHHHHhcCChhhh
Q 012930           20 VYELPADLFDILLTCLPPLAL   40 (453)
Q Consensus        20 ~~~lp~~~~~~i~~~l~~~~l   40 (453)
                      +.+||.|++..||++||+.-+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl   21 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDL   21 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHH
Confidence            357999999999999998766

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=94.73  E-value=0.019  Score=56.21  Aligned_cols=70  Identities=16%  Similarity=0.127  Sum_probs=36.0

Q ss_pred             ccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930          374 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       374 L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                      +..+.++.|.+... ....+    .++.....+..|++++|..++.|...++.++.. +..++.+..+.|..++.+
T Consensus       415 l~el~ls~~~lka~-l~s~i----n~l~stqtl~kldisgn~mgd~gap~lpkalq~-n~rlr~ipds~n~p~~~g  484 (553)
T KOG4242|consen  415 LAELSLSPGPLKAG-LESAI----NKLLSTQTLAKLDISGNGMGDGGAPPLPKALQS-NCRLRPIPDSLNLPEDPG  484 (553)
T ss_pred             ccCcccCCCccccc-HHHHH----HhhccCcccccccccCCCcccCCCCcCccccCC-CCccCCCCCCCCCccccc
Confidence            55555555555432 11111    333344556666666666666555555555555 444666666555555443

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=94.06  E-value=0.08  Score=49.72  Aligned_cols=123  Identities=18%  Similarity=0.130  Sum_probs=78.1

Q ss_pred             HhhCCCCCCEEEcCCCC-CCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCC
Q 012930          304 LLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN  382 (453)
Q Consensus       304 L~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N  382 (453)
                      +..+-+.+...+++++. |...    .-..+..++.   .-+..+...+.+-+..+.-+-+++..+..+++|++|++.+|
T Consensus       193 i~~nd~~l~evnlnn~~~ip~e----~lk~~~eal~---~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesn  265 (353)
T KOG3735|consen  193 IKENDTGLTEVNLNNIRRIPIE----TLKQFSEALK---NNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESN  265 (353)
T ss_pred             HhcCCCCceeeeccccccCCHH----HHHHHHHHHh---cCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccc
Confidence            34556888988888775 3311    0111223333   44566667777777777666677777888889999999999


Q ss_pred             CCChhHHHhHHHHHHhhcCCCCCccEEEccCC--CCChhhHHHHHHHHhcCCCCCcEE
Q 012930          383 TIEDDGIRSLIPYFVQASERCNPLVELYLENC--ELSGRGVSQLLDTLSTLRRPPTSL  438 (453)
Q Consensus       383 ~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~~L~~L  438 (453)
                      .|++.|+.+++    .++....+|..+...+-  .+....-..++..+.. +.+|-.+
T Consensus       266 FItg~gi~a~~----~al~~n~tl~el~~dnqrq~lg~~vemeia~~lee-n~sllk~  318 (353)
T KOG3735|consen  266 FITGLGIMALL----RALQSNKSLTELKNDNQRQVLGNAVEMEIALELEE-NASLLKF  318 (353)
T ss_pred             ccccHHHHHHH----HHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHh-ccccccc
Confidence            99999888887    44566677877765443  2444444455666666 3334333

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.78  E-value=0.062  Score=30.37  Aligned_cols=21  Identities=48%  Similarity=0.839  Sum_probs=9.5

Q ss_pred             CCccEEeCCCC-CCChhHHHhH
Q 012930          372 PNLEILDISDN-TIEDDGIRSL  392 (453)
Q Consensus       372 ~~L~~L~Ls~N-~i~~~g~~~l  392 (453)
                      ++|+.|+|++| .|+|.|+.++
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHHH
Confidence            34444444444 2444444433

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=93.49  E-value=0.24  Score=46.61  Aligned_cols=100  Identities=14%  Similarity=0.186  Sum_probs=78.0

Q ss_pred             HHHHHhcCCCccEEEcCCC-CCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEE
Q 012930          208 CKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLK  286 (453)
Q Consensus       208 ~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~  286 (453)
                      ..-+..+-+.+++.++.++ .|.......+++++..+    ...+.+.+.+.+..+    ..+.++...+..+++|++|+
T Consensus       190 leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~n----t~vk~Fsla~tr~~d----~vA~a~a~ml~~n~sl~sln  261 (353)
T KOG3735|consen  190 LERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNN----THVKKFSLANTRSSD----PVAFAIAEMLKENKSLTSLN  261 (353)
T ss_pred             HHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcC----chhhhhhhhcccCCc----hhHHHHHHHHhhcchhhhee
Confidence            4444567789999999988 88888889999888875    678888888887777    34446777778889999999


Q ss_pred             cCCCCCChhHHHHHHHHHhhCCCCCCEEEc
Q 012930          287 LRHCHLDRDFGRMVFSSLLEASSSLSILDL  316 (453)
Q Consensus       287 L~~n~l~~~~~~~l~~~L~~~~~~L~~L~L  316 (453)
                      +.+|.|++.+...+..+|..+ .+|..+..
T Consensus       262 vesnFItg~gi~a~~~al~~n-~tl~el~~  290 (353)
T KOG3735|consen  262 VESNFITGLGIMALLRALQSN-KSLTELKN  290 (353)
T ss_pred             ccccccccHHHHHHHHHHhcc-chhhHhhh
Confidence            999999998888888877665 55555543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=92.55  E-value=0.15  Score=28.79  Aligned_cols=24  Identities=13%  Similarity=0.415  Sum_probs=19.7

Q ss_pred             CCCccEEEcCCC-CCChhHHHHHHH
Q 012930          215 SETLASLEFLHC-KLSPSFVEGICR  238 (453)
Q Consensus       215 ~~~L~~L~L~~n-~l~~~~~~~l~~  238 (453)
                      +++|++|+|++| .|++.++..+++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            468899999999 799988888753

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=91.49  E-value=0.18  Score=33.16  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=17.7

Q ss_pred             hhhccCchHHHHHHHhcCChhhh
Q 012930           18 PYVYELPADLFDILLTCLPPLAL   40 (453)
Q Consensus        18 ~~~~~lp~~~~~~i~~~l~~~~l   40 (453)
                      +.+.+||.|++..|+.+||+..+
T Consensus         1 ~~~~~LP~~il~~Il~~l~~~~~   23 (48)
T PF00646_consen    1 FPLSDLPDEILQEILSYLDPKDL   23 (48)
T ss_dssp             -HHHHS-HHHHHHHHHTS-HHHH
T ss_pred             CCHHHCCHHHHHHHHHHCcHHHH
Confidence            45789999999999999997666

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.07  E-value=0.11  Score=26.14  Aligned_cols=6  Identities=50%  Similarity=0.789  Sum_probs=2.1

Q ss_pred             EEecCC
Q 012930          349 LNLRGN  354 (453)
Q Consensus       349 L~L~~n  354 (453)
                      |++++|
T Consensus         6 L~l~~n   11 (17)
T PF13504_consen    6 LDLSNN   11 (17)
T ss_dssp             EEETSS
T ss_pred             EECCCC
Confidence            333333

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=90.37  E-value=0.1  Score=28.18  Aligned_cols=15  Identities=27%  Similarity=0.248  Sum_probs=9.6

Q ss_pred             CcEEECcCCCCCcccc
Q 012930          435 PTSLSIADNNLGRFCA  450 (453)
Q Consensus       435 L~~L~Ls~N~l~~~~~  450 (453)
                      |++|||++|+|+ .+|
T Consensus         2 L~~Ldls~n~l~-~ip   16 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIP   16 (22)
T ss_dssp             ESEEEETSSEES-EEG
T ss_pred             ccEEECCCCcCE-eCC
Confidence            666777777666 444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	453
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-23
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-18
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-17
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-21
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-19
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-13
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	8e-10
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	2e-08
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	2e-06
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-04

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 98.6 bits (246), Expect = 7e-23
 Identities = 54/289 (18%), Positives = 94/289 (32%), Gaps = 35/289 (12%)

Query: 172 LQNALCVEETCQLLRE-----SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLH 225
           +   L +      + E       + SL L            L +       ++ SL    
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 226 CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV-VVELVSFLSSG-RSLC 283
             L     + + + L +    +  + NLS        N  S     ELV  L++   ++ 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSL-NLS-------GNFLSYKSSDELVKTLAAIPFTIT 112

Query: 284 SLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 343
            L L               +     +S++ L+L GN +G       +S            
Sbjct: 113 VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG------IKSSDELIQILAAIP 166

Query: 344 QSLRLLNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIRSLIPYFVQASER 402
            ++  LNLRGNNL   +  +L   L  IP ++  LD+S N +       L          
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL----AYIFSS 222

Query: 403 CNP-LVELYLENCELSGRGVSQL---LDTLSTLRRPPTSLSIADNNLGR 447
               +V L L    L G  +  L    D+L  L     ++ +  + +  
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL----QTVYLDYDIVKN 267

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 84.4 bits (209), Expect = 4e-18
 Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 12/181 (6%)

Query: 272 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRS 331
           +  F S    + SL L   +L       +  +     +S++ L+LSGNS+G       ++
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG------FKN 67

Query: 332 GPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIR 390
                        ++  LNL GN L    + +L   L  IP  + +LD+  N        
Sbjct: 68  SDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS 127

Query: 391 SLIPYFVQASERCNP-LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 449
                  QA       +  L L   +L  +   +L+  L+ +     SL++  NNL    
Sbjct: 128 EFK----QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183

Query: 450 A 450
            
Sbjct: 184 C 184

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 42/266 (15%), Positives = 76/266 (28%), Gaps = 26/266 (9%)

Query: 188 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 246
             +  L L W  F  +      +       ++ SL      L     + + + L +    
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168

Query: 247 IHKIENLSIDISSFIENCP--SSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSS 303
           ++ + NL              S    EL  FL+S   S+ SL L    L       +   
Sbjct: 169 VNSL-NLR--------GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219

Query: 304 LLEASSSLSILDLSGNSIGGWLSKYDRSGPLFS--LGAGKSLQSLRLLNLRGNNLCKADA 361
                + +  L+L  N +         S         + K LQ++ L      N+ K   
Sbjct: 220 FSSIPNHVVSLNLCLNCLH------GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC 273

Query: 362 RDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE-LYLENCELSGRG 420
           + LG+A  +I  + ++D +   I       +           +   +   L N  L    
Sbjct: 274 KALGAAFPNIQKIILVDKNGKEIHPSHSIPIS----NLIRELSGKADVPSLLNQCLIFAQ 329

Query: 421 VSQLLDTLSTLRRPPTSLSIADNNLG 446
             Q       +             L 
Sbjct: 330 KHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 81.7 bits (202), Expect = 4e-17
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 289 HCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 348
           +  L    G             ++ LDLS N++         S          +  S+  
Sbjct: 2   NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY------SISTVELIQAFANTPASVTS 55

Query: 349 LNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIRSLIPYFVQASERCN-PL 406
           LNL GN+L   ++ +L   L  IP N+  L++S N +       L    V+        +
Sbjct: 56  LNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL----VKTLAAIPFTI 111

Query: 407 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450
             L L   + S +  S+     S L    TSL++  N+LG   +
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 96.6 bits (241), Expect = 8e-22
 Identities = 59/262 (22%), Positives = 95/262 (36%), Gaps = 27/262 (10%)

Query: 188 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 246
             +QSL ++     +     L  LL    +    +    C L+ +  + I  +L      
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLL----QQCQVVRLDDCGLTEARCKDISSALRVNPA- 57

Query: 247 IHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVFSSL 304
              +  L++       N    V V  V     +    +  L L++C L    G  V SS 
Sbjct: 58  ---LAELNLR-----SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT-GAGCGVLSST 108

Query: 305 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 364
           L    +L  L LS N +G      D    L   G       L  L L   +L  A    L
Sbjct: 109 LRTLPTLQELHLSDNLLG------DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162

Query: 365 GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 424
            S L   P+ + L +S+N I + G+R L      +  +   L  L LE+C ++      L
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ---LEALKLESCGVTSDNCRDL 219

Query: 425 LDTLSTLRRPPTSLSIADNNLG 446
              +++       L++  N LG
Sbjct: 220 CGIVASKAS-LRELALGSNKLG 240

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 92.7 bits (231), Expect = 2e-20
 Identities = 56/273 (20%), Positives = 86/273 (31%), Gaps = 23/273 (8%)

Query: 182 CQLLRES--KLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 238
            Q L+    K+Q L L+           L   L     TL  L      L  + ++ +C 
Sbjct: 77  LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCE 135

Query: 239 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 298
            L   +    ++E L ++  S            L S L +      L + +  ++    R
Sbjct: 136 GLLDPQC---RLEKLQLEYCSLSAAS----CEPLASVLRAKPDFKELTVSNNDINEAGVR 188

Query: 299 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 358
           ++   L ++   L  L L    +         +          S  SLR L L  N L  
Sbjct: 189 VLCQGLKDSPCQLEALKLESCGVT------SDNCRDLCG-IVASKASLRELALGSNKLGD 241

Query: 359 ADARDLGSALVHI-PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 417
               +L   L+H    L  L I +  I   G   L     +       L EL L   EL 
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL----CRVLRAKESLKELSLAGNELG 297

Query: 418 GRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450
             G   L +TL        SL +   +    C 
Sbjct: 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 91.6 bits (228), Expect = 4e-20
 Identities = 56/275 (20%), Positives = 99/275 (36%), Gaps = 40/275 (14%)

Query: 182 CQLLRES--KLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 238
           CQ L++S  +L++L L       ++ + LC ++   + +L  L     KL    +  +C 
Sbjct: 191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA-SLRELALGSNKLGDVGMAELCP 249

Query: 239 SLCSKRKRIHKIENLS---------IDISSFIENCPSSVVVEL---------VSFLSSG- 279
            L     R+  +  +           D+   +    S   + L            L    
Sbjct: 250 GLLHPSSRLRTL-WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 308

Query: 280 ----RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLF 335
                 L SL ++ C          FSS+L  +  L  L +S N +       D      
Sbjct: 309 LEPGCQLESLWVKSCSFTAA-CCSHFSSVLAQNRFLLELQISNNRLE------DAGVREL 361

Query: 336 SLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPY 395
             G G+    LR+L L   ++  +    L + L+   +L  LD+S+N + D GI  L   
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL--- 418

Query: 396 FVQASERCNP-LVELYLENCELSGRGVSQLLDTLS 429
            V++  +    L +L L +   S     +L     
Sbjct: 419 -VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 452

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.0 bits (185), Expect = 9e-15
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 24/144 (16%)

Query: 308 SSSLSILDLSGNSIG--GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG 365
           S  +  LD+    +    W                  LQ  +++ L    L +A  +D+ 
Sbjct: 2   SLDIQSLDIQCEELSDARWAE------------LLPLLQQCQVVRLDDCGLTEARCKDIS 49

Query: 366 SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL- 424
           SAL   P L  L++  N + D G+  ++      +  C  + +L L+NC L+G G   L 
Sbjct: 50  SALRVNPALAELNLRSNELGDVGVHCVLQGL--QTPSCK-IQKLSLQNCCLTGAGCGVLS 106

Query: 425 --LDTLSTLRRPPTSLSIADNNLG 446
             L TL TL      L ++DN LG
Sbjct: 107 STLRTLPTL----QELHLSDNLLG 126

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 38/214 (17%), Positives = 69/214 (32%), Gaps = 33/214 (15%)

Query: 188 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 246
           S+L++L +       +    LC++L     +L  L     +L       +C +L     +
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLAGNELGDEGARLLCETLLEPGCQ 314

Query: 247 IHKIENLS---------IDISSFIENCPSSVVVEL---------VSFLSSG-----RSLC 283
           +  +  +             SS +      + +++         V  L  G       L 
Sbjct: 315 LESL-WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373

Query: 284 SLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 343
            L L  C +  D      ++ L A+ SL  LDLS N +G      D           +  
Sbjct: 374 VLWLADCDV-SDSSCSSLAATLLANHSLRELDLSNNCLG------DAGILQLVESVRQPG 426

Query: 344 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL 377
             L  L L      +     L +     P+L ++
Sbjct: 427 CLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 93.2 bits (232), Expect = 6e-21
 Identities = 48/267 (17%), Positives = 81/267 (30%), Gaps = 44/267 (16%)

Query: 184 LLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 242
           LL+  KL ++ L    F     + L   L +++  L  L   +  L P     I R+L  
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 243 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS 302
                                                  L S+      L+ +     ++
Sbjct: 149 LAVNKKAKNA---------------------------PPLRSIICGRNRLE-NGSMKEWA 180

Query: 303 SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG-KSLQSLRLLNLRGNNLCKADA 361
              ++   L  + +  N I          G    L  G    Q L++L+L+ N      +
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRP-------EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233

Query: 362 RDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP--LVELYLENCELSGR 419
             L  AL   PNL  L ++D  +   G  ++    V A  +     L  L L+  E+   
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSARGAAAV----VDAFSKLENIGLQTLRLQYNEIELD 289

Query: 420 GVSQLLDTLSTLRRPPTSLSIADNNLG 446
            V  L   +         L +  N   
Sbjct: 290 AVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 80.9 bits (200), Expect = 8e-17
 Identities = 24/186 (12%), Positives = 50/186 (26%), Gaps = 14/186 (7%)

Query: 269 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 328
              + + L    S+  + L    +         S  + +   L I + S    G    + 
Sbjct: 21  EKSVFAVLLEDDSVKEIVLSGNTIG-TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI 79

Query: 329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 388
             +  L    A      L  + L  N         L   L     LE L + +N +    
Sbjct: 80  PEALRLLL-QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138

Query: 389 IRSL-----IPYFVQASERCNPLVELYLENCELSGRGVSQL---LDTLSTLRRPPTSLSI 440
              +          + ++   PL  +      L    + +      +   L     ++ +
Sbjct: 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL----HTVKM 194

Query: 441 ADNNLG 446
             N + 
Sbjct: 195 VQNGIR 200

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 16/145 (11%)

Query: 307 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS 366
           A  S+    L  ++I                       S++ + L GN +    AR L  
Sbjct: 2   ARFSIEGKSLKLDAITT-------EDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE 54

Query: 367 ALVHIPNLEILDISDNTIED--DGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 424
            +    +LEI + SD       D I   +   +QA  +C  L  + L +          L
Sbjct: 55  NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114

Query: 425 LDTLS---TLRRPPTSLSIADNNLG 446
           +D LS    L      L + +N LG
Sbjct: 115 IDFLSKHTPL----EHLYLHNNGLG 135

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 36/205 (17%), Positives = 64/205 (31%), Gaps = 20/205 (9%)

Query: 188 SKLQSLVLRWIRFE-EHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 246
             L+S++    R E   ++   K    +   L +++ +   + P   EGI   L      
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRP---EGIEHLLLEGLAY 214

Query: 247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE 306
             +++ L +  ++F           L   L S  +L  L L  C L    G         
Sbjct: 215 CQELKVLDLQDNTFTHLG----SSALAIALKSWPNLRELGLNDCLL-SARGAAAVVDAFS 269

Query: 307 --ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA--R 362
              +  L  L L  N I         +         + +  L  L L GN   + D    
Sbjct: 270 KLENIGLQTLRLQYNEIE------LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 323

Query: 363 DLGSALVHIPNLEILDISDNTIEDD 387
           ++          E+ ++ D     D
Sbjct: 324 EIREVFSTRGRGELDELDDMEELTD 348

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 87.1 bits (216), Expect = 5e-19
 Identities = 47/248 (18%), Positives = 83/248 (33%), Gaps = 24/248 (9%)

Query: 188 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 246
           S L+ L L  +R        +  +L      L  +    C+L P+ +  +       RK 
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK- 130

Query: 247 IHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVFSSL 304
                   + +     N       + +    L     + +L+L +  L    G  V    
Sbjct: 131 --------LGLQ---LNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL-TAAGVAVLMEG 178

Query: 305 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 364
           L  ++S++ L L    +G      D    L +       + L+ LN+  N      A  L
Sbjct: 179 LAGNTSVTHLSLLHTGLG------DEGLELLAA-QLDRNRQLQELNVAYNGAGDTAALAL 231

Query: 365 GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 424
             A    P+LE+L +  N +  +G + L      A+E    +V    E   +S      L
Sbjct: 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLG-GAAEGGARVVVSLTEGTAVSEYWSVIL 290

Query: 425 LDTLSTLR 432
            +    L 
Sbjct: 291 SEVQRNLN 298

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 69.0 bits (169), Expect = 6e-13
 Identities = 35/178 (19%), Positives = 59/178 (33%), Gaps = 28/178 (15%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
            SL  L L    +      +V + L     +L  ++L+   +                G 
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD-------------PAGL 118

Query: 340 ---GKSLQSLRLLNLRGNNLCKADARDLGSALVH-IPNLEILDISDNTIEDDGIRSLIPY 395
                     R L L+ N+L     +DL   L+H    +  L +S+N +   G+  L   
Sbjct: 119 RTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL--- 175

Query: 396 FVQASERCNPLVELYLENCELSGRGVSQLLDTL---STLRRPPTSLSIADNNLGRFCA 450
            ++       +  L L +  L   G+  L   L     L      L++A N  G   A
Sbjct: 176 -MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL----QELNVAYNGAGDTAA 228

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 36/221 (16%), Positives = 67/221 (30%), Gaps = 20/221 (9%)

Query: 182 CQLLRE--SKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 238
             LL     ++ +L L         V  L + L  N+ ++  L  LH  L    +E +  
Sbjct: 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAA 205

Query: 239 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 298
            L   R+    ++ L++  +   +       + L        SL  L L    L    GR
Sbjct: 206 QLDRNRQ----LQELNVAYNGAGDTA----ALALARAAREHPSLELLHLYFNELS-SEGR 256

Query: 299 MVFSSLLEASSS---LSILDLSGNSIG----GWLSKYDRSGPLFSLGAGKSLQSLRLLNL 351
            V   L  A+     + +    G ++       LS+  R+   +     +    L L +L
Sbjct: 257 QVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDL 316

Query: 352 RGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSL 392
             +     +       L     +  L     +         
Sbjct: 317 EDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWS 357

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 23/196 (11%), Positives = 50/196 (25%), Gaps = 32/196 (16%)

Query: 188 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 246
           + +  L L      +E ++ L   L +N   L  L   +     +    + R+       
Sbjct: 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNGAGDTAALALARAAREHPS- 240

Query: 247 IHKIENLSIDISSFIENCPSSV-VVELVSFLSSGRSLCSLKLR--HCHLDRDFGRMVFSS 303
              +E L +       N  SS     L     +      + +         ++  ++ S 
Sbjct: 241 ---LELLHLY-----FNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSE 292

Query: 304 LLEASSS-----------LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLR 352
           +    +S           L + DL  +             P       +    +R L  +
Sbjct: 293 VQRNLNSWDRARVQRHLELLLRDLEDSRGATL-------NPWRKAQLLRVEGEVRALLEQ 345

Query: 353 GNNLCKADARDLGSAL 368
             +             
Sbjct: 346 LGSSGSPSGSWSHPQF 361

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 66.1 bits (160), Expect = 5e-12
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 10/147 (6%)

Query: 282 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGK 341
           L SL++    L       +  S L     L +     +                 L +  
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD-----GDMNVFRPLFSKD 249

Query: 342 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE 401
              +L+ L +               + + +P LE +DIS   + D+G R L+       +
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDI-LPQLETMDISAGVLTDEGARLLL----DHVD 304

Query: 402 RCNPLVELYLENCELSGRGVSQLLDTL 428
           +   L  + ++   LS     +L  +L
Sbjct: 305 KIKHLKFINMKYNYLSDEMKKELQKSL 331

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 58.8 bits (141), Expect = 1e-09
 Identities = 33/183 (18%), Positives = 62/183 (33%), Gaps = 23/183 (12%)

Query: 210 LLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV 269
           +  +    L SLE +   L  S VE I  S     +++     L + +  +  +     +
Sbjct: 187 IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL----VLYVGVEDYGFDGD---M 239

Query: 270 VELVSFLSSGR--SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 327
                  S  R  +L  L +           M   S +     L  +D+S   +      
Sbjct: 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI--LPQLETMDISAGVLTD---- 293

Query: 328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD 387
               G    L     ++ L+ +N++ N L     ++L  +L        +D+SD+   DD
Sbjct: 294 ---EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPM-----KIDVSDSQEYDD 345

Query: 388 GIR 390
              
Sbjct: 346 DYS 348

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 21/149 (14%)

Query: 304 LLEASSSLSILDLSG-NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADAR 362
           +      L  ++L+   +I         +    +  A K+   ++  ++ G       A 
Sbjct: 31  IQNNDPDLEEVNLNNIMNIP------VPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAF 83

Query: 363 DLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC--ELSGRG 420
            L   L     L+ L++  N I   GI +L    V+A +    L+EL ++N    L    
Sbjct: 84  ALAEMLKVNNTLKSLNVESNFISGSGILAL----VEALQSNTSLIELRIDNQSQPLGNNV 139

Query: 421 VSQLLDTL---STLRRPPTSLSIADNNLG 446
             ++ + L   +TL              G
Sbjct: 140 EMEIANMLEKNTTL----LKFGYHFTQQG 164

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 22/167 (13%), Positives = 51/167 (30%), Gaps = 26/167 (15%)

Query: 276 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLF 335
            ++   L  + L +            +  L+ ++ +    + G                 
Sbjct: 32  QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN------------- 78

Query: 336 SLGA---GKSLQ---SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN--TIEDD 387
              A    + L+   +L+ LN+  N +  +    L  AL    +L  L I +    + ++
Sbjct: 79  DPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138

Query: 388 GIRSLIPYFVQASERCNPLVELYLENCELSGRG-VSQLLDTLSTLRR 433
               +        E+   L++      +   R   S  +   + L R
Sbjct: 139 VEMEIA----NMLEKNTTLLKFGYHFTQQGPRLRASNAMMNNNDLVR 181

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 53/192 (27%), Positives = 80/192 (41%), Gaps = 33/192 (17%)

Query: 254 SIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSI 313
           SID+SS      +     + S L S   L SL L + H++         S  + S+SL+ 
Sbjct: 54  SIDLSS---KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV------SGFKCSASLTS 104

Query: 314 LDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 373
           LDLS NS+ G ++       L SLG   S   L+ LN+  N L   D     S  + + +
Sbjct: 105 LDLSRNSLSGPVT------TLTSLG---SCSGLKFLNVSSNTL---DFPGKVSGGLKLNS 152

Query: 374 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRR 433
           LE+LD+S N+I               S+ C  L  L +   ++SG      +     L  
Sbjct: 153 LEVLDLSANSIS-----GANVVGWVLSDGCGELKHLAISGNKISG---DVDVSRCVNLE- 203

Query: 434 PPTSLSIADNNL 445
               L ++ NN 
Sbjct: 204 ---FLDVSSNNF 212

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 54/248 (21%), Positives = 85/248 (34%), Gaps = 51/248 (20%)

Query: 215 SETLASLEFL---HCKLS---PSFVEGICRSLCSKRKRIHKIEN-LSIDISSFIENCPSS 267
              L SL++L     K +   P F+ G C +L      +    N     +  F  +C   
Sbjct: 265 PLPLKSLQYLSLAENKFTGEIPDFLSGACDTL----TGLDLSGNHFYGAVPPFFGSCSLL 320

Query: 268 VVVEL----------VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS 317
             + L          +  L   R L  L L         G  +  SL   S+SL  LDLS
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS---GE-LPESLTNLSASLLTLDLS 376

Query: 318 GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL 377
            N+          SGP+          +L+ L L+ N         +   L +   L  L
Sbjct: 377 SNNF---------SGPILPNLCQNPKNTLQELYLQNNGFT----GKIPPTLSNCSELVSL 423

Query: 378 DISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTS 437
            +S N +   G    IP  +      + L +L L    L G    ++   L  ++    +
Sbjct: 424 HLSFNYLS--GT---IPSSLG---SLSKLRDLKLWLNMLEG----EIPQELMYVKT-LET 470

Query: 438 LSIADNNL 445
           L +  N+L
Sbjct: 471 LILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 47/176 (26%)

Query: 276 LSSGRSLCSLKLRHCHLDRDFGRM-VFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPL 334
           +S   +L  L +   +       +          S+L  LD+SGN + G  S+       
Sbjct: 196 VSRCVNLEFLDVSSNNF---STGIPFLGDC----SALQHLDISGNKLSGDFSR------- 241

Query: 335 FSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIP-----NLEILDISDNTIEDDGI 389
            ++    +   L+LLN+  N         +G     IP     +L+ L +++N    +  
Sbjct: 242 -AIS---TCTELKLLNISSNQF-------VGP----IPPLPLKSLQYLSLAENKFTGE-- 284

Query: 390 RSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
              IP F+  +  C+ L  L L      G  V     + S L     SL+++ NN 
Sbjct: 285 ---IPDFLSGA--CDTLTGLDLSGNHFYGA-VPPFFGSCSLL----ESLALSSNNF 330

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 39/145 (26%)

Query: 252 NLSIDISSFIENCPSSVVVELV---------SFLSSGRSLCSLKLRHCHLD----RDFGR 298
            LS  I S + +      ++L            L   ++L +L L    L          
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 299 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPL-FSLGAGKSLQSLRLLNLRGNNLC 357
                     ++L+ + LS N +         +G +   +G    L++L +L L  N+  
Sbjct: 489 C---------TNLNWISLSNNRL---------TGEIPKWIG---RLENLAILKLSNNSF- 526

Query: 358 KADARDLGSALVHIPNLEILDISDN 382
              + ++ + L    +L  LD++ N
Sbjct: 527 ---SGNIPAELGDCRSLIWLDLNTN 548

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 37/205 (18%), Positives = 61/205 (29%), Gaps = 35/205 (17%)

Query: 252 NLSIDISSFIENCPS-----------SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMV 300
                  +     PS             V    S     R+L  L L + ++  +    +
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI-ANINDDM 499

Query: 301 FSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 360
              L      L ILDL  N++       +  GP++ L   K L  L +LNL  N   +  
Sbjct: 500 LEGL----EKLEILDLQHNNLARLWKHANPGGPIYFL---KGLSHLHILNLESNGFDEIP 552

Query: 361 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 420
                     +  L+I+D+  N      + +L             L  L L+   ++   
Sbjct: 553 V----EVFKDLFELKIIDLGLN-----NLNTLPASVFNNQVS---LKSLNLQKNLITSVE 600

Query: 421 VSQLLDTLSTLRRPPTSLSIADNNL 445
                     L    T L +  N  
Sbjct: 601 KKVFGPAFRNL----TELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 26/173 (15%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
            +L  L L +  + +            A+SSL  L+LS N I             FS G 
Sbjct: 145 ENLQELLLSNNKI-QALKSEELDIF--ANSSLKKLELSSNQIKE-----------FSPGC 190

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399
             ++  L  L L    L  +    L   L    ++  L +S++      + +        
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNS-----QLSTTSNTTFLG 244

Query: 400 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS 452
            +  N L  L L    L+  G +     L  L        +  NN+    ++S
Sbjct: 245 LKWTN-LTMLDLSYNNLNVVG-NDSFAWLPQLE----YFFLEYNNIQHLFSHS 291

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 53/273 (19%), Positives = 92/273 (33%), Gaps = 47/273 (17%)

Query: 179 EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 238
            E   +   S L+ L L   + +E               L  L   + +L PS  E +C 
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKE----FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217

Query: 239 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 298
            L +       I NLS+  +S +    ++  + L        +L  L L + +L    G 
Sbjct: 218 ELANT-----SIRNLSLS-NSQLSTTSNTTFLGL-----KWTNLTMLDLSYNNL-NVVGN 265

Query: 299 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 358
             F+ L      L    L  N+I                 +   L ++R LNL+ +   +
Sbjct: 266 DSFAWL----PQLEYFFLEYNNIQH-----------LFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 359 ADARDL-----GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLEN 413
           + +          +   +  LE L++ DN I       +             L  L L N
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIP-----GIKS---NMFTGLINLKYLSLSN 362

Query: 414 CELSGRGVSQLLDTLSTLRRPP-TSLSIADNNL 445
              S R ++   +T  +L   P   L++  N +
Sbjct: 363 SFTSLRTLT--NETFVSLAHSPLHILNLTKNKI 393

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 73/530 (13%), Positives = 158/530 (29%), Gaps = 154/530 (29%)

Query: 11  VTGDDVIPYVYELPAD------LFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCF-- 62
           +   + I ++            LF  LL+       Q+   +    +       +Y F  
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLS------KQEEMVQKFVEEVLR---INYKFLM 95

Query: 63  ------ENGR---------KRGRYGNFNTVWKKLFKTRWSGFTD------QIEPVDWQQR 101
                 +            +R R  N N V+ K   +R   +        ++ P      
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN--- 152

Query: 102 YWEAHVQG-------CLDEAAELV----VLPSFRGLISDINIS-----DTILNYIGYEQQ 145
                + G        +  A ++     V       I  +N+      +T+L      + 
Sbjct: 153 ---VLIDGVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL------EM 201

Query: 146 MNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQS--LVLRWIRFEEH 203
           +  L     ++  +      ++  ++L+      E  +LL+    ++  LVL  ++  + 
Sbjct: 202 LQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 204 VQAL---CKLLI-----QNSETLASLEFLHCKL---SPSFVEGICRSLCSK--------- 243
             A    CK+L+     Q ++ L++    H  L   S +      +SL  K         
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 244 RKRIHKIENLSID-ISSFIENCPS-------SVVVELVSFLSSGRSLCSLK---LRHCHL 292
            + +       +  I+  I +  +           +L + + S  SL  L+    R    
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLEPAEYRKMF- 375

Query: 293 DRDFGRMVF--SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 350
                  VF  S+ +  +  LS++         W     +S  +  +     L    L+ 
Sbjct: 376 -DRLS--VFPPSAHIP-TILLSLI---------WFDV-IKSDVMVVV---NKLHKYSLVE 418

Query: 351 LRGNN--------LCKADARDLGSALVH---IPNLEILDISDN----TIEDDG-IRSLIP 394
            +             +   +      +H   + +  I    D+        D    S I 
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 395 Y---FVQASERCNPLVELYL---------ENCELSGRGVSQLLDTLSTLR 432
           +    ++  ER      ++L          +   +      +L+TL  L+
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 42/307 (13%), Positives = 83/307 (27%), Gaps = 80/307 (26%)

Query: 22  ELPADLFDILLTCLPPLALQK--LQTKM---PFRDGDDCGSPDYCFENGRKRGRYGNFNT 76
            L     D     LP   L     +  +     RDG                  + N+  
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA---------------TWDNWKH 349

Query: 77  VWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTI 136
           V      T      + +EP ++++ +              L V P         +I   +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFD------------RLSVFP------PSAHIPTIL 391

Query: 137 L-----NYIGYEQQ--MNHLACDYS---------KLSYHCQQFGHYARCLRLQ--NALCV 178
           L     + I  +    +N L   YS          +S          +       +   V
Sbjct: 392 LSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 179 EETCQLLRESKLQSLVLRWIR------FEEHVQALCKLLIQNSETLASLEFLHCKLSPSF 232
           +    + +      L+  ++          H++      I++ E +     +   L   F
Sbjct: 451 DHY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKN-----IEHPERMTLFRMVF--LDFRF 502

Query: 233 VEGICRSLCSKRKRIHKIENLSIDI---SSFI-ENCP--SSVVVELVSFLSSGRSLCSLK 286
           +E   R   +       I N    +     +I +N P    +V  ++ FL          
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL--- 559

Query: 287 LRHCHLD 293
           +   + D
Sbjct: 560 ICSKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 68/427 (15%), Positives = 126/427 (29%), Gaps = 126/427 (29%)

Query: 40  LQKLQTKMPFRDGDDCGSPDYC------FENGRKRGR-------YGN----FNTVW---- 78
           LQKL  ++   D +     D+         + +   R       Y N       V     
Sbjct: 202 LQKLLYQI---DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 79  --------KKLFKTRWSGFTDQIEPVDWQQRYWEAHVQG-CLDEAAELVV---------L 120
                   K L  TR+   TD +          + H      DE   L++         L
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 121 PSFRGLISDIN------ISDTILNYIGYEQQMNHLACD----YSKLSYHCQQFGHYARCL 170
           P     +   N      I+++I + +       H+ CD      + S +  +   Y +  
Sbjct: 319 PR---EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 171 RLQNALCVEETCQLLRES---KLQSLVLRWIRFEEH-----VQALC-KLLI--QNSETLA 219
                    +   +   S       L L W    +      V  L    L+  Q  E+  
Sbjct: 376 ---------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 220 SLEFLHCKLSPSFVEGICRSLCSKRKRIHK--IENLSIDISSFIENCPSSVVVE-LVSFL 276
           S+  ++ +L         +        +H+  +++ +I  +   ++     + +   S +
Sbjct: 427 SIPSIYLEL---------KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 277 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL-SKYDRSGPLF 335
             G  L    + H      F RMVF            LD        +L  K       +
Sbjct: 478 --GHHL--KNIEHPERMTLF-RMVF------------LDFR------FLEQKIRHDSTAW 514

Query: 336 SLGAGKSLQSLRLLNLRGNNLCKADA------RDL-------GSALVHIPNLEILDISDN 382
           +  +G  L +L+ L      +C  D         +          L+     ++L I+  
Sbjct: 515 N-ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573

Query: 383 TIEDDGI 389
             ED+ I
Sbjct: 574 A-EDEAI 579

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 16/139 (11%)

Query: 259 SFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSG 318
           + ++      +  L+    + + +    L +  +  D        L+E S SL +L++  
Sbjct: 49  NNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS-DSEARGLIELIETSPSLRVLNVES 107

Query: 319 NSIGG----WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 374
           N +       L +        S    +S+   +  N R + L      D+  A+    +L
Sbjct: 108 NFLTPELLARLLR--------STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESL 159

Query: 375 EILDISDNTIEDDGIRSLI 393
             + IS         R  +
Sbjct: 160 LRVGIS---FASMEARHRV 175

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 14/109 (12%)

Query: 344 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC 403
           + +   +L    +  ++AR L   +   P+L +L++  N +  + +  L    ++++   
Sbjct: 70  KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL----LRSTLVT 125

Query: 404 NPLVELYLENCELSGRGV------SQLLDTLSTLRRPPTSLSIADNNLG 446
             +VE   +N   S  G          ++   +L      + I+  ++ 
Sbjct: 126 QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESL----LRVGISFASME 170

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 22/157 (14%), Positives = 47/157 (29%), Gaps = 15/157 (9%)

Query: 281 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 340
            L  + + +                  S  +    L+  +I       D           
Sbjct: 42  DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS------DSEARGL----I 91

Query: 341 KSLQ---SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFV 397
           + ++   SLR+LN+  N L       L  + +   ++      +      G +  +   +
Sbjct: 92  ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM-DMM 150

Query: 398 QASERCNPLVELYLENCELSGRG-VSQLLDTLSTLRR 433
            A E    L+ + +    +  R  VS+ L+      R
Sbjct: 151 MAIEENESLLRVGISFASMEARHRVSEALERNYERVR 187

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 29/173 (16%)

Query: 274 SFLSSGRSLCSLKLRHCHLDR-DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSG 332
             L +  +L  L L H  ++  D   +   +L    S L  L+LS N             
Sbjct: 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNL----SHLQSLNLSYNEPLS--------- 390

Query: 333 PLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSL 392
                 A K    L LL+L    L   DA+   S   ++  L++L++S +      +   
Sbjct: 391 --LKTEAFKECPQLELLDLAFTRLKVKDAQ---SPFQNLHLLKVLNLSHS-----LLDIS 440

Query: 393 IPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
                        L  L L+       G  Q  ++L TL R    L ++  +L
Sbjct: 441 SEQLFDGLPA---LQHLNLQGNHFPK-GNIQKTNSLQTLGR-LEILVLSFCDL 488

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 30/166 (18%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
             L  L L    L     +  F +L      L +L+LS + +              S   
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNL----HLLKVLNLSHSLLDI-----------SSEQL 444

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399
              L +L+ LNL+GN+  K + +    +L  +  LEIL +S        + S+  +   +
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTN-SLQTLGRLEILVLSFC-----DLSSIDQHAFTS 498

Query: 400 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
            +    +  + L +  L+     + L  L  +      L++A N++
Sbjct: 499 LKM---MNHVDLSHNRLTS-SSIEALSHLKGIY-----LNLASNHI 535

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 30/170 (17%)

Query: 281 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 340
            LC + +   +L + +   + S+     S L  LDL+   +               L +G
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-------------ELPSG 296

Query: 341 -KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399
              L +L+ L L  N            +  + P+L  L I  NT         +      
Sbjct: 297 LVGLSTLKKLVLSANKF----ENLCQISASNFPSLTHLSIKGNTK-------RLELGTGC 345

Query: 400 SERCNPLVELYLENCELSGRGV-SQLLDTLSTLRRPPTSLSIADNNLGRF 448
            E    L EL L + ++      +  L  LS L+    SL+++ N     
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ----SLNLSYNEPLSL 391

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 21/117 (17%)

Query: 266 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325
               ++  + L +   L  L L  C L     +  F+SL      ++ +DLS N +    
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDL-SSIDQHAFTSL----KMMNHVDLSHNRLTS-- 514

Query: 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 382
                     S+ A   L+ + L NL  N++         S L  +     +++  N
Sbjct: 515 ---------SSIEALSHLKGIYL-NLASNHISIILP----SLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 26/170 (15%), Positives = 47/170 (27%), Gaps = 32/170 (18%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
           ++L  L      +       +    L    +L  L L  N I               L  
Sbjct: 105 KALKHLFFIQTGI-----SSIDFIPLHNQKTLESLYLGSNHISS-----------IKLPK 148

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399
           G   + L++L+ + N +      D+ S L    NL  L+++ N I               
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSS-LQQATNLS-LNLNGNDIAG---------IEPG 197

Query: 400 SERCNPLVELYLENCELSGRGVSQL-LDTLSTLRRPPTSLSIADNNLGRF 448
           +        L     +        L   T+ +L       +  D +    
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW----LGTFEDMDDEDI 243

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 42/200 (21%), Positives = 67/200 (33%), Gaps = 26/200 (13%)

Query: 188 SKLQSLVLRWIRFEE-HVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 246
            KLQ+L LR       H       +  +   L +L  ++   +   +             
Sbjct: 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYF 421

Query: 247 IHKIENL-SIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSL 304
           + ++ +L  + ++     +C            S   SL  L L    L   +   +   +
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGD------QTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 305 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 364
            E  S L +L L+ N +                G    L +LR L+L  N L      DL
Sbjct: 476 FEGLSHLQVLYLNHNYLNS-----------LPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524

Query: 365 GSALVHIPNLEILDISDNTI 384
                   NLEILDIS N +
Sbjct: 525 ------PANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 32/167 (19%), Positives = 52/167 (31%), Gaps = 29/167 (17%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
             L  L+L   +      +  F +L     +L ILDL  + I                 A
Sbjct: 48  EQLQLLELGSQYTPLTIDKEAFRNL----PNLRILDLGSSKIYF-----------LHPDA 92

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399
            + L  L  L L    L  +DA        ++  L  LD+S N I    +          
Sbjct: 93  FQGLFHLFELRLYFCGL--SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS- 149

Query: 400 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPP-TSLSIADNNL 445
                 L  +   + ++           L  L+    +  S+A N+L
Sbjct: 150 ------LKSIDFSSNQIF----LVCEHELEPLQGKTLSFFSLAANSL 186

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 46/293 (15%), Positives = 80/293 (27%), Gaps = 45/293 (15%)

Query: 179 EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 238
           E   + L+   L    L        V       +     +  LE L   +S +       
Sbjct: 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM-VLEILD--VSGNGWTVDIT 221

Query: 239 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG---RSLCSLKLRHCHLDRD 295
              S      +  +L +             + +      +G    S+  L L H  +   
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV-FS 280

Query: 296 FGRMVFSSLLEASSSLSILDLSGNSIG----------GWLSKYDRSGPLFSL---GAGKS 342
               VF +L      L +L+L+ N I             L   + S  L           
Sbjct: 281 LNSRVFETL----KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 343 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER 402
           L  +  ++L+ N++              +  L+ LD+ DN +        IP        
Sbjct: 337 LPKVAYIDLQKNHIAIIQD----QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL---S 389

Query: 403 CNPLVE----------LYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
            N LV           ++L    L    +   L  +  L      L +  N  
Sbjct: 390 GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL----QILILNQNRF 438

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 18/176 (10%)

Query: 274 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 333
            +  + ++L  L L    +   +    F  L    +SL  +D S N I            
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKL----NSLKSIDFSSNQI-----FLVCEHE 167

Query: 334 LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN--LEILDISDNTIEDDGIRS 391
           L  L      ++L   +L  N+L    + D G  +    N  LEILD+S N    D I  
Sbjct: 168 LEPL----QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD-ITG 222

Query: 392 LIPYFVQASERCNPLVELYLENCELSGRGVSQL-LDTLSTLRRPP-TSLSIADNNL 445
                +  S+  + ++  ++         +     +T + L R     L ++   +
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 28/166 (16%)

Query: 301 FSSLLEASSSLSILDLSGNSIG----------GWLSKYDRSGPLFSL----GAGKSLQSL 346
            + + +  ++   L LS N I             L   +       L     A ++L +L
Sbjct: 16  LTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75

Query: 347 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 406
           R+L+L  + +          A   + +L  L +    + D  ++      ++A      L
Sbjct: 76  RILDLGSSKIYFLHP----DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA------L 125

Query: 407 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS 452
             L L   ++    +      L++L+    S+  + N +   C + 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLK----SIDFSSNQIFLVCEHE 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 28/166 (16%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
             L  L L  C +     + +     ++ S LS L L+GN I              +LGA
Sbjct: 52  PELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQS-----------LALGA 95

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399
              L SL+ L     NL    A      + H+  L+ L+++ N I+   +          
Sbjct: 96  FSGLSSLQKLVAVETNL----ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN- 150

Query: 400 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
                 L  L L + ++        L  L  +     SL ++ N +
Sbjct: 151 ------LEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPM 189

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 41/265 (15%), Positives = 76/265 (28%), Gaps = 30/265 (11%)

Query: 184 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSE--TLASLEFLHCKLSPSFVEGICRSLC 241
             +E +L  L LR      +V   C   +   E   L   EF +      F +     LC
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 242 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF 301
           +            + I  F        + +++   +   ++ S  L    ++R       
Sbjct: 256 N------------LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 302 SSLLEAS-SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 360
                    +          +         S    +  +   L SL  L+L  N L    
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 361 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 420
                 +     +L+ LD+S N     G+ ++   F         L  L  ++  L    
Sbjct: 364 C--CSQSDFGTTSLKYLDLSFN-----GVITMSSNF----LGLEQLEHLDFQHSNLKQMS 412

Query: 421 VSQLLDTLSTLRRPPTSLSIADNNL 445
              +  +L  L      L I+  + 
Sbjct: 413 EFSVFLSLRNLIY----LDISHTHT 433

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 26/133 (19%)

Query: 281 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 340
           SL  LK+       +F   +F+ L     +L+ LDLS   +              S  A 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTEL----RNLTFLDLSQCQLEQ-----------LSPTAF 490

Query: 341 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS 400
            SL SL++LN+  NN    D          + +L++LD S N I      +     +Q  
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIM-----TSKKQELQHF 541

Query: 401 ERCNPLVELYLEN 413
                L  L L  
Sbjct: 542 PS--SLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 28/138 (20%)

Query: 308 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA 367
             S   LDLS N +        R    +S     S   L++L+L    +   +      A
Sbjct: 27  PFSTKNLDLSFNPL--------RHLGSYSFF---SFPELQVLDLSRCEIQTIED----GA 71

Query: 368 LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 427
              + +L  L ++ N      I+SL      A    + L +L      L+    +  +  
Sbjct: 72  YQSLSHLSTLILTGN-----PIQSLAL---GAFSGLSSLQKLVAVETNLASL-ENFPIGH 122

Query: 428 LSTLRRPPTSLSIADNNL 445
           L TL+     L++A N +
Sbjct: 123 LKTLK----ELNVAHNLI 136

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 27/138 (19%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
            SL +LK+       +    VF++     ++L+ LDLS   +              S G 
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANT----TNLTFLDLSKCQLEQ-----------ISWGV 492

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399
             +L  L+LLN+  NNL   D+    S    + +L  LD S N IE     +        
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDS----SHYNQLYSLSTLDCSFNRIE-----TSKGILQHF 543

Query: 400 SERCNPLVELYLENCELS 417
            +    L    L N  ++
Sbjct: 544 PKS---LAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 55/289 (19%), Positives = 89/289 (30%), Gaps = 55/289 (19%)

Query: 184 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSET--LASLEFLHCKLSPSFVEGICRSLC 241
             +  KL  L LR      ++   C   +       L   EF   +    F   I   LC
Sbjct: 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259

Query: 242 SKRK---RIHKIENLSIDISSFIENCPSSVVVEL-------VSFLSSGRSLCSLKLRHCH 291
                  R+    + S DI  F     +   + L       +  +       SL +  C 
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKF-HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ 318

Query: 292 LDRDFGRMVFSSL---------------LEASSSLSILDLSGNSIGGWLSKYDRSGPLFS 336
           L + F  +    L                 A  SLS LDLS N++      +        
Sbjct: 319 L-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL-----SFSGCCSYSD 372

Query: 337 LGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYF 396
           LG      SLR L+L  N         + +  + +  L+ LD   +T++       +  F
Sbjct: 373 LG----TNSLRHLDLSFNGA-----IIMSANFMGLEELQHLDFQHSTLKR------VTEF 417

Query: 397 VQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
             A      L+ L +            +   L++L      L +A N+ 
Sbjct: 418 -SAFLSLEKLLYLDISYTNTKID-FDGIFLGLTSLNT----LKMAGNSF 460

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 30/174 (17%), Positives = 53/174 (30%), Gaps = 34/174 (19%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
            S  ++ L    L +      FS+     S L  LDLS   I                 A
Sbjct: 32  SSTKNIDLSFNPL-KILKSYSFSNF----SELQWLDLSRCEIET-----------IEDKA 75

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQ 398
              L  L  L L GN +     +     +   + +LE L   +       + SL  + + 
Sbjct: 76  WHGLHHLSNLILTGNPI-----QSFSPGSFSGLTSLENLVAVET-----KLASLESFPIG 125

Query: 399 ASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS 452
                  L +L + +  +    +      L+ L      + ++ N +     N 
Sbjct: 126 QLIT---LKKLNVAHNFIHSCKLPAYFSNLTNLVH----VDLSYNYIQTITVND 172

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 31/156 (19%), Positives = 51/156 (32%), Gaps = 30/156 (19%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
            SL +L      L       + S  +    +L  L+++ N I        +    FS   
Sbjct: 104 TSLENLVAVETKL-----ASLESFPIGQLITLKKLNVAHNFI-----HSCKLPAYFS--- 150

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN---TIEDDGIRSLIPYF 396
             +L +L  ++L  N +      DL     +      LD+S N    I+D   + +    
Sbjct: 151 --NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI---- 204

Query: 397 VQASERCNPLVELYLENCELSGRGVSQLLDTLSTLR 432
                    L EL L     S   +   L  L+ L 
Sbjct: 205 --------KLHELTLRGNFNSSNIMKTCLQNLAGLH 232

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 9e-07
 Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 34/148 (22%)

Query: 305 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 364
           L     L  L L  N I               +     L  L  L+L  N +      D+
Sbjct: 127 LVHLPQLESLYLGNNKI-------------TDITVLSRLTKLDTLSLEDNQI-----SDI 168

Query: 365 GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 424
              L  +  L+ L +S N I D  +R+L             L  L L + E     +++ 
Sbjct: 169 -VPLAGLTKLQNLYLSKNHISD--LRAL--------AGLKNLDVLELFSQEC----LNKP 213

Query: 425 LDTLSTLRRPPTSLSIADNNLGRFCANS 452
           ++  S L  P  ++   D +L      S
Sbjct: 214 INHQSNLVVPN-TVKNTDGSLVTPEIIS 240

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 18/142 (12%)

Query: 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL 305
           +I  IENL   +  F     S   +  +      R L +L + +  + R     +   L 
Sbjct: 30  KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICR-----IGEGLD 84

Query: 306 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK-ADARDL 364
           +A   L+ L L+ NS+            L  L    SL+SL  L +  N +      R  
Sbjct: 85  QALPDLTELILTNNSLVELGD-------LDPL---ASLKSLTYLCILRNPVTNKKHYRL- 133

Query: 365 GSALVHIPNLEILDISDNTIED 386
              +  +P + +LD     +++
Sbjct: 134 -YVIYKVPQVRVLDFQKVKLKE 154

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 32/258 (12%), Positives = 78/258 (30%), Gaps = 31/258 (12%)

Query: 188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI 247
           S ++ L LR               +   E  + ++ L  + S    +     L    + I
Sbjct: 196 SSVRYLELRDTNLAR----FQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYI 250

Query: 248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEA 307
            ++  +  D  +   N            +S    + ++ +R  H+ + +     S++   
Sbjct: 251 LELSEVEFDDCTL--NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308

Query: 308 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA 367
              +  + +  + +            L      + L+SL  L+L  N +   +     + 
Sbjct: 309 LEKVKRITVENSKV-----------FLVPCSFSQHLKSLEFLDLSENLM-VEEYLKNSAC 356

Query: 368 LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 427
               P+L+ L +S N +        +    +       L  L +          S     
Sbjct: 357 KGAWPSLQTLVLSQNHLRS------MQKTGEILLTLKNLTSLDISRNTFHPMPDS--CQW 408

Query: 428 LSTLRRPPTSLSIADNNL 445
              +R     L+++   +
Sbjct: 409 PEKMR----FLNLSSTGI 422

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 40/201 (19%), Positives = 65/201 (32%), Gaps = 47/201 (23%)

Query: 263 NCPSSVVVELVSFLSSGRSLCS-----------LKLRHCHLDRDFGRMVFSSLLEASSSL 311
           +C +S V +        RS  S           L L    +    G     +     ++L
Sbjct: 3   SCDASGVCDG-----RSRSFTSIPSGLTAAMKSLDLSFNKI-TYIGHGDLRAC----ANL 52

Query: 312 SILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHI 371
            +L L  + I                 A  SL SL  L+L  N+L    +    S    +
Sbjct: 53  QVLILKSSRINT-----------IEGDAFYSLGSLEHLDLSDNHLSSLSS----SWFGPL 97

Query: 372 PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTL 431
            +L+ L++  N  +  G+ SL P           L  L + N E            L++L
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPNLTN-------LQTLRIGNVETFSEIRRIDFAGLTSL 150

Query: 432 RRPPTSLSIADNNLGRFCANS 452
                 L I   +L  + + S
Sbjct: 151 NE----LEIKALSLRNYQSQS 167

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 34/234 (14%), Positives = 68/234 (29%), Gaps = 31/234 (13%)

Query: 184 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 243
           +++   L+ L +R  R    +      ++  S  L  L   + +++ +    +  +    
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLLEATGPD 122

Query: 244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSS 303
              ++          +++                    L  L +   H            
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQW----------LKPGLKVLSIAQAHSLN-----FSCE 167

Query: 304 LLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARD 363
            +    +LS LDLS N   G          L S        +L++L LR   +       
Sbjct: 168 QVRVFPALSTLDLSDNPELGER-------GLISALCPLKFPTLQVLALRNAGMETPS-GV 219

Query: 364 LGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 417
             +       L+ LD+S N      +R        + +  + L  L L    L 
Sbjct: 220 CSALAAARVQLQGLDLSHN-----SLRDAAG--APSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 41/232 (17%), Positives = 71/232 (30%), Gaps = 20/232 (8%)

Query: 214 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELV 273
           N    A +E      S  ++     +     +    I++LS+   +       S ++   
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 274 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 333
             +     L  L L +  +    G      L      L+IL+L   S     +       
Sbjct: 89  LRVLGISGLQELTLENLEVT---GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ 145

Query: 334 LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLI 393
                       L++L++   +        +       P L  LD+SDN     G R LI
Sbjct: 146 W-------LKPGLKVLSIAQAHSLNFSCEQVR----VFPALSTLDLSDNPEL--GERGLI 192

Query: 394 PYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
                       L  L L N  +     S +   L+  R     L ++ N+L
Sbjct: 193 SALCPLKFPT--LQVLALRNAGME--TPSGVCSALAAARVQLQGLDLSHNSL 240

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 30/117 (25%), Positives = 42/117 (35%), Gaps = 19/117 (16%)

Query: 281 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP--LFSLG 338
           +L  L LR+  ++   G  V S+L  A   L  LDLS NS+           P  L SL 
Sbjct: 202 TLQVLALRNAGMETPSG--VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 339 A---------GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 386
                           L +L+L  N L      D   +   +P +  L +  N   D
Sbjct: 260 LSFTGLKQVPKGLPAKLSVLDLSYNRL------DRNPSPDELPQVGNLSLKGNPFLD 310

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 40/303 (13%), Positives = 83/303 (27%), Gaps = 46/303 (15%)

Query: 168 RCLRLQNALCVEETCQLLRESKLQSLVLRWIR-----------FEEHVQALCKLLIQNSE 216
             + +             R   L+SL L+              +  +V      +  N  
Sbjct: 53  EHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112

Query: 217 TLASLEFLHCKLSPSFVEGICRSLCSKRKR--IHKIENLSID-ISSFIENCPSSVVVEL- 272
            L S+ F    +S   ++ + ++     +   + K    + D + S + +C     + + 
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172

Query: 273 ------------VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 320
                               SL  L                 ++     SL  + +    
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF-AKISPKDLETIARNCRSLVSVKVGDFE 231

Query: 321 IGGWLSKYDRSGPLFSLGAG----------KSLQSLRLLNLRGNNLCKADARDLGSALVH 370
           I   +  +  +  L     G          K +  +    L    L      ++      
Sbjct: 232 ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF 291

Query: 371 IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLST 430
              +  LD+    +E +   +LI       ++C  L  L   N  +  RG+  L      
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLI-------QKCPNLEVLETRNV-IGDRGLEVLAQYCKQ 343

Query: 431 LRR 433
           L+R
Sbjct: 344 LKR 346

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 42/291 (14%), Positives = 91/291 (31%), Gaps = 32/291 (10%)

Query: 151 CDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRE-----SKLQSLVLRWIRFEEHVQ 205
              ++     +++ +     +L            +       ++++ L L +        
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL---LET 307

Query: 206 ALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 265
                LIQ    L  LE  +  +    +E + +  C + KR+     +            
Sbjct: 308 EDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQY-CKQLKRLR----IERGADEQGMEDE 361

Query: 266 SSVVVE--LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 323
             +V +  L++     + L  + + +     +       S+     +L    L       
Sbjct: 362 EGLVSQRGLIALAQGCQELEYMAV-YVSDITNES---LESIGTYLKNLCDFRLVLLDREE 417

Query: 324 WLSKYDRSGPLFSLGAG-KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 382
            ++       + SL  G K L+      LR   L       +G    + PN+  + +   
Sbjct: 418 RITDLPLDNGVRSLLIGCKKLRRFAFY-LRQGGLTDLGLSYIGQ---YSPNVRWMLLGYV 473

Query: 383 TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRR 433
              D+G+          S  C  L +L +  C  S R ++  +  L +LR 
Sbjct: 474 GESDEGLMEF-------SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 28/141 (19%)

Query: 309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG--S 366
             + +++++ N         D    L     G+ +Q    + +  NNL     +     +
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI---IYIGYNNL-----KTFPVET 324

Query: 367 ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG--RGVSQL 424
           +L  +  L +L+   N +E       +P F         L  L L   +++         
Sbjct: 325 SLQKMKKLGMLECLYNQLE-----GKLPAF----GSEIKLASLNLAYNQITEIPANFCGF 375

Query: 425 LDTLSTLRRPPTSLSIADNNL 445
            + +        +LS A N L
Sbjct: 376 TEQV-------ENLSFAHNKL 389

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 25/150 (16%)

Query: 275 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSL---LEASSSLSILDLSGNSIGGWLSKYDRS 331
              S   + ++   +  +        F  L        ++S ++LS N I          
Sbjct: 397 DAKSVSVMSAIDFSYNEI-GSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-------- 447

Query: 332 GPLFSLGAGKSLQSLRLLNLRGNNLC---KADARDLGSALVHIPNLEILDISDNTIEDDG 388
              F      +   L  +NL GN L    K   +D      +   L  +D+  N      
Sbjct: 448 ---FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-----K 499

Query: 389 IRSLIPYFVQASERCNPLVELYLENCELSG 418
           +  L   F   +     LV + L     S 
Sbjct: 500 LTKLSDDFRATT--LPYLVGIDLSYNSFSK 527

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 18/150 (12%)

Query: 238 RSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 297
             L + +    KIE L+ +  +       +V +  VS L     L  L+L    +     
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG--- 85

Query: 298 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC 357
                 L E   +L+ L+LSGN +    +       L  L   K L+ L+ L+L    + 
Sbjct: 86  --GLDMLAEKLPNLTHLNLSGNKLKDIST-------LEPL---KKLECLKSLDLFNCEVT 133

Query: 358 KADA-RDLGSALVHIPNLEILDISDNTIED 386
             +  R+  S    +P L  LD  D   ++
Sbjct: 134 NLNDYRE--SVFKLLPQLTYLDGYDREDQE 161

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 30/138 (21%)

Query: 281 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 340
           ++  L L +C  +          L     +L  L L    +              S+   
Sbjct: 25  AVRELVLDNCKSNDG----KIEGLTAEFVNLEFLSLINVGLI-------------SVSNL 67

Query: 341 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED-DGIRSLIPYFVQA 399
             L  L+ L L  N +       L      +PNL  L++S N ++D   +  L       
Sbjct: 68  PKLPKLKKLELSENRIFGG----LDMLAEKLPNLTHLNLSGNKLKDISTLEPL------- 116

Query: 400 SERCNPLVELYLENCELS 417
            ++   L  L L NCE++
Sbjct: 117 -KKLECLKSLDLFNCEVT 133

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 51/192 (26%)

Query: 274 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSL---------------LEASSSLSILDLSG 318
           S L+   ++  L   H  +       V   L               L     L  +DLS 
Sbjct: 199 STLAIPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 257

Query: 319 NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILD 378
           N +                     +Q L  L +  N L       L      IP L++LD
Sbjct: 258 NELE-----------KIMYHPFVKMQRLERLYISNNRL-----VALNLYGQPIPTLKVLD 301

Query: 379 ISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL-LDTLSTLRRPPTS 437
           +S N +        +    +   + + L  LYL++  +       L L T  TL+    +
Sbjct: 302 LSHNHLLH------VE---RNQPQFDRLENLYLDHNSI-----VTLKLSTHHTLK----N 343

Query: 438 LSIADNNLGRFC 449
           L+++ N+     
Sbjct: 344 LTLSHNDWDCNS 355

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 37/166 (22%), Positives = 58/166 (34%), Gaps = 44/166 (26%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
            SL    + +  L          S L    ++  LD S NSI               +  
Sbjct: 186 PSLFHANVSYNLL----------STLAIPIAVEELDASHNSIN-------------VVRG 222

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399
                 L +L L+ NNL      D    L++ P L  +D+S N +E       I Y    
Sbjct: 223 P-VNVELTILKLQHNNL-----TDTA-WLLNYPGLVEVDLSYNELEK------IMY--HP 267

Query: 400 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
             +   L  LY+ N  L    ++     + TL+     L ++ N+L
Sbjct: 268 FVKMQRLERLYISNNRLV--ALNLYGQPIPTLKV----LDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 28/144 (19%)

Query: 274 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 333
           + L S R +  L L    +  +     F+       ++  L +  N+I            
Sbjct: 63  ALLDSFRQVELLNLNDLQI-EEIDTYAFAYA----HTIQKLYMGFNAIR----------- 106

Query: 334 LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLI 393
                  +++  L +L L  N+L             + P L  L +S+N +E       I
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLER------I 156

Query: 394 PYFVQASERCNPLVELYLENCELS 417
                  +    L  L L +  L+
Sbjct: 157 E--DDTFQATTSLQNLQLSSNRLT 178

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 19/137 (13%), Positives = 48/137 (35%), Gaps = 32/137 (23%)

Query: 309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSAL 368
           +SL+ + L+  ++               L   +   +++ L +   +       +  + +
Sbjct: 44  NSLTYITLANINVT-------------DLTGIEYAHNIKDLTINNIHA-----TNY-NPI 84

Query: 369 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL 428
             + NLE L I    +  D I +L             L  L + +       +++ ++TL
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNL--------SGLTSLTLLDISHSAHDDSILTK-INTL 135

Query: 429 STLRRPPTSLSIADNNL 445
             +     S+ ++ N  
Sbjct: 136 PKV----NSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 21/143 (14%), Positives = 47/143 (32%), Gaps = 35/143 (24%)

Query: 305 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 364
           +E + ++  L ++                  +      L +L  L + G ++        
Sbjct: 62  IEYAHNIKDLTINNIHAT-------------NYNPISGLSNLERLRIMGKDVTSDKI--- 105

Query: 365 GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 424
              L  + +L +LDIS +  +D  +  +             +  + L         ++ +
Sbjct: 106 -PNLSGLTSLTLLDISHSAHDDSILTKI--------NTLPKVNSIDLSYNGA----ITDI 152

Query: 425 --LDTLSTLRRPPTSLSIADNNL 445
             L TL  L     SL+I  + +
Sbjct: 153 MPLKTLPEL----KSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 31/146 (21%)

Query: 273 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSG 332
            + +S   +L  L++    +         S L    +SL++LD+S ++            
Sbjct: 81  YNPISGLSNLERLRIMGKDV-TSDKIPNLSGL----TSLTLLDISHSAHDDS-------- 127

Query: 333 PLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSL 392
               L    +L  +  ++L  N        D+   L  +P L+ L+I  + + D   R +
Sbjct: 128 ---ILTKINTLPKVNSIDLSYNGAIT----DI-MPLKTLPELKSLNIQFDGVHD--YRGI 177

Query: 393 IPYFVQASERCNPLVELYLENCELSG 418
                   E    L +LY  +  + G
Sbjct: 178 --------EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 23/104 (22%)

Query: 343 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED-DGIRSLIPYFVQASE 401
           + SL  + L   N+      DL + + +  N++ L I++    + + I  L         
Sbjct: 43  MNSLTYITLANINV-----TDL-TGIEYAHNIKDLTINNIHATNYNPISGLS-------- 88

Query: 402 RCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
               L  L +   +++   +   L  L++L    T L I+ +  
Sbjct: 89  ---NLERLRIMGKDVTSDKIPN-LSGLTSL----TLLDISHSAH 124

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 21/104 (20%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
            SL  LK+       +F   +F+ L     +L+ LDLS   +              S  A
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTEL----RNLTFLDLSQCQLEQ-----------LSPTA 489

Query: 340 GKSLQSLRLLNLRGNNLCKADARDL-GSALVHIPNLEILDISDN 382
             SL SL++LN+  N L     + +       + +L+ + +  N
Sbjct: 490 FNSLSSLQVLNMASNQL-----KSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 47/276 (17%), Positives = 82/276 (29%), Gaps = 54/276 (19%)

Query: 185 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSE--TLASLEFLHCKLSPSFVEGICRSLCS 242
            +E +L  L LR      +V   C   +   E   L   EF +      F +     LC+
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 243 ---KRKRIHKIENLSIDISSFIENCPSSVVVEL----------VSFLSSGRSLCSLKLRH 289
              +  R+  ++    DI        +     L           S+    + L  +  + 
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 290 CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL 349
                         L     SL  L  + N  G             +  +   L SL  L
Sbjct: 317 GQFP-------TLKL----KSLKRLTFTSNKGG-------------NAFSEVDLPSLEFL 352

Query: 350 NLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL 409
           +L  N L          +     +L+ LD+S N     G+ ++   F+   +    L  L
Sbjct: 353 DLSRNGLSFKG--CCSQSDFGTTSLKYLDLSFN-----GVITMSSNFLGLEQ----LEHL 401

Query: 410 YLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
             ++  L       +  +L  L      L I+  + 
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNL----IYLDISHTHT 433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 35/173 (20%), Positives = 56/173 (32%), Gaps = 32/173 (18%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
            S  +L L    L R  G   F S       L +LDLS   I                GA
Sbjct: 28  FSTKNLDLSFNPL-RHLGSYSFFSF----PELQVLDLSRCEIQT-----------IEDGA 71

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399
            +SL  L  L L GN +          A   + +L+ L   +       + SL  + +  
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVET-----NLASLENFPIGH 122

Query: 400 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS 452
            +    L EL + +  +    + +    L+ L      L ++ N +       
Sbjct: 123 LKT---LKELNVAHNLIQSFKLPEYFSNLTNLE----HLDLSSNKIQSIYCTD 168

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 38/172 (22%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
             L +L L    + +      FS L    SSL  L     ++                  
Sbjct: 76  SHLSTLILTGNPI-QSLALGAFSGL----SSLQKLVAVETNLAS-----------LENFP 119

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED------DGIRSLI 393
              L++L+ LN+  N +       L     ++ NLE LD+S N I+         +  + 
Sbjct: 120 IGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 394 PYFVQASERCNP-------------LVELYLENCELSGRGVSQLLDTLSTLR 432
              +      NP             L +L L N   S   +   +  L+ L 
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 38/172 (22%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
             L  L++    L + +      S+     ++S L L                 L     
Sbjct: 174 TFLEELEIDASDL-QSYEPKSLKSI----QNVSHLILHMKQH-----------ILLLEIF 217

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGS----ALVHIPNLEILDISDNTIEDDGIRSLIPY 395
                S+  L LR  +L      +L +    +L+       + I+D ++       ++  
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-----FQVMKL 272

Query: 396 FVQASERCNPLVELYLENCELSG--RGVSQLLDTLSTLRRPPTSLSIADNNL 445
             Q S     L+EL     +L     G+    D L++L++    + +  N  
Sbjct: 273 LNQISG----LLELEFSRNQLKSVPDGI---FDRLTSLQK----IWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 25/172 (14%)

Query: 274 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 333
           S  S    L  L++ +        R  F+ L    + L  L++  + +        +S  
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGL----TFLEELEIDASDL--------QSYE 190

Query: 334 LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLI 393
             SL   KS+Q++  L L                +    ++E L++ D  ++      L 
Sbjct: 191 PKSL---KSIQNVSHLILHMKQHILLLE----IFVDVTSSVECLELRDTDLDTFHFSEL- 242

Query: 394 PYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
                  E  + + +    N +++   + Q++  L+ +      L  + N L
Sbjct: 243 ----STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG-LLELEFSRNQL 289

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 34/137 (24%)

Query: 309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSAL 368
           S L+ L++  N I               + A K L  L++LN+  N +      D+ S L
Sbjct: 243 SQLTWLEIGTNQIS-------------DINAVKDLTKLKMLNVGSNQI-----SDI-SVL 283

Query: 369 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL 428
            ++  L  L +++N + ++ +  +             L  L+L    ++     + L +L
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVI--------GGLTNLTTLFLSQNHITD---IRPLASL 332

Query: 429 STLRRPPTSLSIADNNL 445
           S +     S   A+  +
Sbjct: 333 SKM----DSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 36/209 (17%), Positives = 74/209 (35%), Gaps = 47/209 (22%)

Query: 239 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 298
           +L +    I++I   + D++  I        V  V       S+  L +    +      
Sbjct: 4   TLATLPAPINQIFPDA-DLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKV------ 56

Query: 299 MVFSSL--LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNL 356
              +S+  +E  ++L  L+L+GN I               +    +L  L  L +  N +
Sbjct: 57  ---ASIQGIEYLTNLEYLNLNGNQIT-------------DISPLSNLVKLTNLYIGTNKI 100

Query: 357 CKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCEL 416
                 D+ SAL ++ NL  L ++++ I D      I      ++    +  L L     
Sbjct: 101 -----TDI-SALQNLTNLRELYLNEDNISD------ISPLANLTK----MYSLNLGANHN 144

Query: 417 SGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
                   L  ++ L      L++ ++ +
Sbjct: 145 L--SDLSPLSNMTGL----NYLTVTESKV 167

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 35/141 (24%)

Query: 305 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 364
           L   + +  L+L  N     LS          L    ++  L  L +  + +     +D+
Sbjct: 128 LANLTKMYSLNLGANHNLSDLS---------PLS---NMTGLNYLTVTESKV-----KDV 170

Query: 365 GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 424
            + + ++ +L  L ++ N IED      I      +     L        +++       
Sbjct: 171 -TPIANLTDLYSLSLNYNQIED------ISPLASLTS----LHYFTAYVNQITD---ITP 216

Query: 425 LDTLSTLRRPPTSLSIADNNL 445
           +  ++ L     SL I +N +
Sbjct: 217 VANMTRL----NSLKIGNNKI 233

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 36/137 (26%)

Query: 309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSAL 368
           +SL       N I               +    ++  L  L +  N +      DL S L
Sbjct: 199 TSLHYFTAYVNQIT-------------DITPVANMTRLNSLKIGNNKI-----TDL-SPL 239

Query: 369 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL 428
            ++  L  L+I  N I D      I       +    L  L + + ++S      +L+ L
Sbjct: 240 ANLSQLTWLEIGTNQISD------INAV----KDLTKLKMLNVGSNQISD---ISVLNNL 286

Query: 429 STLRRPPTSLSIADNNL 445
           S L     SL + +N L
Sbjct: 287 SQL----NSLFLNNNQL 299

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 26/199 (13%), Positives = 54/199 (27%), Gaps = 38/199 (19%)

Query: 271 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR 330
            L     +G  +    + + +L+          +      L +LD   N     +   + 
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM----VKLGLLDCVHNK----VRHLEA 590

Query: 331 SGPLFSL---------------GAGKSLQSLRLLNLRGNNLCKADARDL--GSALVHIPN 373
            G    L                       +  L    N L     + +        +  
Sbjct: 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL-----KYIPNIFNAKSVYV 645

Query: 374 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRR 433
           +  +D S N I        I   +   +  N    + L   E+     ++L  T S +  
Sbjct: 646 MGSVDFSYNKIG--SEGRNISCSMDDYKGIN-ASTVTLSYNEIQKF-PTELFATGSPIST 701

Query: 434 PPTSLSIADNNLGRFCANS 452
               + +++N +     NS
Sbjct: 702 ----IILSNNLMTSIPENS 716

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 40/251 (15%), Positives = 72/251 (28%), Gaps = 42/251 (16%)

Query: 207 LCKLLIQNSETLASLEFLHCKLS--PSFVEGICRSLCS-KRKRIHKIENLSIDISSFIEN 263
             K+ +   + L   + L   ++  P        S  S K  +I  + N    IS  I+ 
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR 446

Query: 264 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEAS----SSLSILDLSGN 319
                   L     +        +     D +          E S      L+ ++L   
Sbjct: 447 LTK-----LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 320 SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNL-----CKADARDLGSALVHIPNL 374
                L           L     L  L+ LN+  N        KAD   L       P +
Sbjct: 502 PNMTQLPD--------FLY---DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 375 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRP 434
           +I  +  N +E+    + +        +   L  L   + ++        L+   T  + 
Sbjct: 551 QIFYMGYNNLEEFPASASLQ-------KMVKLGLLDCVHNKVRH------LEAFGTNVK- 596

Query: 435 PTSLSIADNNL 445
            T L +  N +
Sbjct: 597 LTDLKLDYNQI 607

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 35/229 (15%), Positives = 71/229 (31%), Gaps = 43/229 (18%)

Query: 188 SKLQSLVLRWIRFEE-HVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 246
             + S+   + +         C +        +++   + ++   F   +  +       
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATG------ 696

Query: 247 IHKIENLSI-DISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSL 304
                 +S   +S+  + + P + +        +   L ++ LR   L         ++L
Sbjct: 697 ----SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752

Query: 305 LEASSSLSILDLSGNSIGG---------WLSKYDRSGPLFSLGAGKS---------LQSL 346
                 LS +D+S N              L  +       + G               SL
Sbjct: 753 ----PYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 347 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPY 395
             L +  N++ K D +         P L ILDI+DN      + S+ PY
Sbjct: 809 IQLQIGSNDIRKVDEKLT-------PQLYILDIADNPNISIDVTSVCPY 850

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 37/191 (19%), Positives = 60/191 (31%), Gaps = 49/191 (25%)

Query: 274 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSL---------------LEASSSLSILDLSG 318
           S L+   ++  L   H  +       V   L               L     L  +DLS 
Sbjct: 205 STLAIPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 263

Query: 319 NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILD 378
           N +                     +Q L  L +  N L       L      IP L++LD
Sbjct: 264 NELEK-----------IMYHPFVKMQRLERLYISNNRL-----VALNLYGQPIPTLKVLD 307

Query: 379 ISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSL 438
           +S N +    +    P F +       L  LYL++  +     +  L T  TL+     L
Sbjct: 308 LSHNHLLH--VERNQPQFDR-------LENLYLDHNSIV----TLKLSTHHTLKN----L 350

Query: 439 SIADNNLGRFC 449
           +++ N+     
Sbjct: 351 TLSHNDWDCNS 361

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 37/166 (22%), Positives = 58/166 (34%), Gaps = 44/166 (26%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
            SL    + +  L          S L    ++  LD S NSI               +  
Sbjct: 192 PSLFHANVSYNLL----------STLAIPIAVEELDASHNSIN-------------VVRG 228

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399
                 L +L L+ NNL      D    L++ P L  +D+S N +E       I Y    
Sbjct: 229 P-VNVELTILKLQHNNL-----TDTA-WLLNYPGLVEVDLSYNELEK------IMY--HP 273

Query: 400 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
             +   L  LY+ N  L    ++     + TL+     L ++ N+L
Sbjct: 274 FVKMQRLERLYISNNRLV--ALNLYGQPIPTLKV----LDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 20/113 (17%)

Query: 274 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 333
           + L S R +  L L    +  +     F+       ++  L +  N+I            
Sbjct: 69  ALLDSFRQVELLNLNDLQI-EEIDTYAFAYA----HTIQKLYMGFNAIRY---------- 113

Query: 334 LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 386
                  +++  L +L L  N+L             + P L  L +S+N +E 
Sbjct: 114 -LPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLER 161

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 19/105 (18%)

Query: 281 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 340
           SL  LK+       +F   +F+ L     +L+ LDLS   +              S  A 
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTEL----RNLTFLDLSQCQLEQ-----------LSPTAF 195

Query: 341 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE 385
            SL SL++LN+  NN    D          + +L++LD S N I 
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 31/165 (18%)

Query: 281 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 340
           S   L+L    L       VF  L    + L+ L LS N +         S       + 
Sbjct: 29  SATRLELESNKLQS-LPHGVFDKL----TQLTKLSLSSNGL---------SFKGCCSQSD 74

Query: 341 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS 400
               SL+ L+L  N +       + S  + +  LE LD   +      ++ +  +     
Sbjct: 75  FGTTSLKYLDLSFNGV-----ITMSSNFLGLEQLEHLDFQHS-----NLKQMSEF--SVF 122

Query: 401 ERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
                L+ L + +        + + + LS+L      L +A N+ 
Sbjct: 123 LSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEV----LKMAGNSF 162

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 28/145 (19%)

Query: 302 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA 361
           SS       L  LD   +++            +       SL++L  L++   +   A  
Sbjct: 94  SSNFLGLEQLEHLDFQHSNLKQ----------MSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 362 RDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 421
                    + +LE+L ++ N+       + +P           L  L L  C+L    +
Sbjct: 144 G----IFNGLSSLEVLKMAGNSF----QENFLPD---IFTELRNLTFLDLSQCQL--EQL 190

Query: 422 SQ-LLDTLSTLRRPPTSLSIADNNL 445
           S    ++LS+L+     L+++ NN 
Sbjct: 191 SPTAFNSLSSLQV----LNMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 30/140 (21%)

Query: 308 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG--KSLQSLRLLNLRGNNLCKADARDLG 365
            SS + L+L  N +              SL  G    L  L  L+L  N L         
Sbjct: 27  PSSATRLELESNKLQ-------------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ- 72

Query: 366 SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL 425
            +     +L+ LD+S N     G+ ++   F+   +    L  L  ++  L       + 
Sbjct: 73  -SDFGTTSLKYLDLSFN-----GVITMSSNFLGLEQ----LEHLDFQHSNLKQMSEFSVF 122

Query: 426 DTLSTLRRPPTSLSIADNNL 445
            +L  L      L I+  + 
Sbjct: 123 LSLRNLIY----LDISHTHT 138

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 24/124 (19%)

Query: 276 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLF 335
            S G+   ++ L +  +      +         S +  LDL  N I   ++  + +    
Sbjct: 116 CSRGQGKKNIYLANNKI-TMLRDLDEGCR----SRVQYLDLKLNEIDT-VNFAELAASSD 169

Query: 336 SL-------------GAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 382
           +L                     L+ L+L  N L       +G        +  + + +N
Sbjct: 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL-----AFMGPEFQSAAGVTWISLRNN 224

Query: 383 TIED 386
            +  
Sbjct: 225 KLVL 228

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 35/147 (23%)

Query: 302 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA 361
             + +  +   I  ++ +S+                   +S  +++ L+L GN L +  A
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQ-----------ALASLRQSAWNVKELDLSGNPLSQISA 51

Query: 362 RDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 421
               + L     LE+L++S N + +             S     L  L L N  +     
Sbjct: 52  ----ADLAPFTKLELLNLSSNVLYE------TLDLESLST----LRTLDLNNNYVQ---- 93

Query: 422 SQLLDTLSTLRRPPTSLSIADNNLGRF 448
              L    ++     +L  A+NN+ R 
Sbjct: 94  --ELLVGPSIE----TLHAANNNISRV 114

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 38/248 (15%), Positives = 80/248 (32%), Gaps = 28/248 (11%)

Query: 188 SKLQSLVLRW--IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245
           S+L +L L +  ++  + V+ LC+           L+ L   +     +     L S  K
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCP--------KLQRLW--VLDYIEDAGLEVLASTCK 338

Query: 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL 305
            + ++  +       +E   +     LVS       L S+ L  C    +       ++ 
Sbjct: 339 DLREL-RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAA---LITIA 393

Query: 306 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG 365
               +++   L                 +      +  + LR L+L G      D     
Sbjct: 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG---LLTDK-VFE 449

Query: 366 SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL 425
               +   +E+L ++     D G+  +          C+ L +L + +C    + +    
Sbjct: 450 YIGTYAKKMEMLSVAFAGDSDLGMHHV-------LSGCDSLRKLEIRDCPFGDKALLANA 502

Query: 426 DTLSTLRR 433
             L T+R 
Sbjct: 503 SKLETMRS 510

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 45/257 (17%), Positives = 74/257 (28%), Gaps = 47/257 (18%)

Query: 188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEF--LHCKLSPSFVEGICRSLCSKRK 245
             L+ L LR    ++              +L SL    L  ++S S +E +         
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC----- 210

Query: 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL 305
               +++L +             + +L + L     L  L       +     +     +
Sbjct: 211 --PNLKSLKL------NRAVP--LEKLATLLQRAPQLEELGTGGYTAEVR-PDVYSGLSV 259

Query: 306 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG 365
             S    +  LSG              P            L  LNL         + DL 
Sbjct: 260 ALSGCKELRCLSGFWDAV-----PAYLPAV----YSVCSRLTTLNLSY---ATVQSYDLV 307

Query: 366 SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE---------L 416
             L   P L+ L + D  IED G+  L       +  C  L EL +   E         L
Sbjct: 308 KLLCQCPKLQRLWVLDY-IEDAGLEVL-------ASTCKDLRELRVFPSEPFVMEPNVAL 359

Query: 417 SGRGVSQLLDTLSTLRR 433
           + +G+  +      L  
Sbjct: 360 TEQGLVSVSMGCPKLES 376

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 33/166 (19%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
            +L +L LR   L +     VF+ L    S+L+ LD+S N I            +     
Sbjct: 80  FNLRTLGLRSNRL-KLIPLGVFTGL----SNLTKLDISENKIV-----------ILLDYM 123

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399
            + L +L+ L +  N+L     R    A   + +LE L +    +      + IP   +A
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHR----AFSGLNSLEQLTLEKCNL------TSIP--TEA 171

Query: 400 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
               + L+ L L +  ++          L  L+     L I+    
Sbjct: 172 LSHLHGLIVLRLRHLNINAIR-DYSFKRLYRLKV----LEISHWPY 212

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 24/110 (21%)

Query: 278 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSL 337
            G +L SL + HC+L      +    L      L  L+LS N I              ++
Sbjct: 222 YGLNLTSLSITHCNL-TAVPYLAVRHL----VYLRFLNLSYNPIS-------------TI 263

Query: 338 GAG--KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE 385
                  L  L+ + L G  L   +      A   +  L +L++S N + 
Sbjct: 264 EGSMLHELLRLQEIQLVGGQLAVVEPY----AFRGLNYLRVLNVSGNQLT 309

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 34/176 (19%)

Query: 271 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR 330
           E + + S+ +++  ++  +    R    +  S L    + + +L L+   +         
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-------- 454

Query: 331 SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED-DGI 389
                 L   + L  +  L+L  N L     R L  AL  +  LE+L  SDN +E+ DG+
Sbjct: 455 -----VLCHLEQLLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNALENVDGV 504

Query: 390 RSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
            +L             L EL L N  L      Q L +   L      L++  N+L
Sbjct: 505 ANL-----------PRLQELLLCNNRLQQSAAIQPLVSCPRLVL----LNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 44/308 (14%), Positives = 89/308 (28%), Gaps = 41/308 (13%)

Query: 78  WKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTIL 137
             +                   Q  +     G   +   +++         D    + + 
Sbjct: 293 RNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLF 352

Query: 138 NYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRW 197
                 ++              C++       L  +N  C+     L+R           
Sbjct: 353 RCELSVEKSTV----LQSELESCKELQE----LEPENKWCLLTIILLMRALDPLLYEKET 404

Query: 198 IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLS--- 254
           +++   ++A+  +     + L S   L   +       + R L    K +  + +L    
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV-RVLHLAHKDLTVLCHLEQLL 463

Query: 255 ----IDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSS 310
               +D+S    N     +  L   L++ R L  L+     L+   G       +     
Sbjct: 464 LVTHLDLSH---NR----LRALPPALAALRCLEVLQASDNALENVDG-------VANLPR 509

Query: 311 LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVH 370
           L  L L  N +           PL       S   L LLNL+GN+LC+ +          
Sbjct: 510 LQELLLCNNRLQQS----AAIQPL------VSCPRLVLLNLQGNSLCQEEGI-QERLAEM 558

Query: 371 IPNLEILD 378
           +P++  + 
Sbjct: 559 LPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 33/188 (17%)

Query: 207 LCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 266
             K  +Q   TL +++ +             RS       + K+E   + +         
Sbjct: 400 YEKETLQYFSTLKAVDPMRAAYLDD-----LRSKFLLENSVLKMEYADVRVLHLAHKD-- 452

Query: 267 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 326
              + ++  L     +  L L H  L            L A   L +L  S N++     
Sbjct: 453 ---LTVLCHLEQLLLVTHLDLSHNRLRA------LPPALAALRCLEVLQASDNAL----- 498

Query: 327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI-E 385
                    ++    +L  L+ L L  N L ++ A      LV  P L +L++  N++ +
Sbjct: 499 --------ENVDGVANLPRLQELLLCNNRLQQSAAIQ---PLVSCPRLVLLNLQGNSLCQ 547

Query: 386 DDGIRSLI 393
           ++GI+  +
Sbjct: 548 EEGIQERL 555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 35/153 (22%)

Query: 301 FSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 360
              + +  +   I  ++ +S+                   +S  +++ L+L GN L +  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQ-----------ALASLRQSAWNVKELDLSGNPLSQIS 50

Query: 361 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 420
           A    + L     LE+L++S N + +             S     L  L L N  +    
Sbjct: 51  A----ADLAPFTKLELLNLSSNVLYE------TLDLESLST----LRTLDLNNNYVQE-- 94

Query: 421 VSQLLDTLSTLRRPPTSLSIADNNLGRFCANSG 453
               L    ++     +L  A+NN+ R   + G
Sbjct: 95  ----LLVGPSIE----TLHAANNNISRVSCSRG 119

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 28/165 (16%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
            SL  L L    +           L    ++L+ L LS NSI                G+
Sbjct: 192 PSLTELHLDGNKI-TKVDAASLKGL----NNLAKLGLSFNSISA-----------VDNGS 235

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399
             +   LR L+L  N L       +   L     ++++ + +N I   G     P     
Sbjct: 236 LANTPHLRELHLNNNKL-----VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP--PGY 288

Query: 400 SERCNPLVELYLENCELSGRGVSQ-LLDTLSTLRRPPTSLSIADN 443
           + +      + L +  +    +       +        ++ + + 
Sbjct: 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA----AVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 29/138 (21%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
           ++L +L L +  +        F+ L      L  L LS N +               L  
Sbjct: 76  KNLHTLILINNKI-SKISPGAFAPL----VKLERLYLSKNQLK-------------ELPE 117

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399
               ++L+ L +  N + K       S    +  + ++++  N ++  GI +       A
Sbjct: 118 K-MPKTLQELRVHENEITKVRK----SVFNGLNQMIVVELGTNPLKSSGIEN------GA 166

Query: 400 SERCNPLVELYLENCELS 417
            +    L  + + +  ++
Sbjct: 167 FQGMKKLSYIRIADTNIT 184

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 36/137 (26%)

Query: 309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSAL 368
           ++L+ L+L+ N +               +    +L++L  L L  NN+      D+ S +
Sbjct: 287 TALTNLELNENQLE-------------DISPISNLKNLTYLTLYFNNI-----SDI-SPV 327

Query: 369 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL 428
             +  L+ L   +N + D      +            +  L   + ++S       L  L
Sbjct: 328 SSLTKLQRLFFYNNKVSD------VSSL----ANLTNINWLSAGHNQISD---LTPLANL 374

Query: 429 STLRRPPTSLSIADNNL 445
           + +    T L + D   
Sbjct: 375 TRI----TQLGLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 29/110 (26%)

Query: 309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSAL 368
           ++L+ ++ S N +               +   K+L  L  + +  N +      D+ + L
Sbjct: 68  NNLTQINFSNNQLT-------------DITPLKNLTKLVDILMNNNQI-----ADI-TPL 108

Query: 369 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418
            ++ NL  L + +N I D          +   +    L  L L +  +S 
Sbjct: 109 ANLTNLTGLTLFNNQITD----------IDPLKNLTNLNRLELSSNTISD 148

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 19/88 (21%)

Query: 305 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 364
           L   + L  L L  N I               +     L  L+ L L  N++      DL
Sbjct: 152 LSRLTKLDTLSLEDNQI-------------SDIVPLAGLTKLQNLYLSKNHI-----SDL 193

Query: 365 GSALVHIPNLEILDISDNTIEDDGIRSL 392
             AL  + NL++L++      +  I   
Sbjct: 194 -RALAGLKNLDVLELFSQECLNKPINHQ 220

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 29/113 (25%)

Query: 305 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 364
           L   S+L +L L  N I              ++     L +L+ L++    +      DL
Sbjct: 125 LAGLSNLQVLYLDLNQIT-------------NISPLAGLTNLQYLSIGNAQV-----SDL 166

Query: 365 GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 417
            + L ++  L  L   DN I D      I            L+E++L+N ++S
Sbjct: 167 -TPLANLSKLTTLKADDNKISD------ISPL----ASLPNLIEVHLKNNQIS 208

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 40/179 (22%), Positives = 59/179 (32%), Gaps = 53/179 (29%)

Query: 277 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFS 336
                + +L +   +L         +SL      L  L++SGN              L S
Sbjct: 58  CLPAHITTLVIPDNNL---------TSLPALPPELRTLEVSGNQ-------------LTS 95

Query: 337 LGAG-KSLQSLRLLNLRGN-------NLCKADARD--LGSALVHIPNLEILDISDNTIED 386
           L      L  L + +            LCK       L S  V  P L+ L +SDN +  
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA- 154

Query: 387 DGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445
               SL     +       L +L+  N +L     + L    S L      LS++DN L
Sbjct: 155 ----SLPALPSE-------LCKLWAYNNQL-----TSLPMLPSGL----QELSVSDNQL 193

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 28/138 (20%), Positives = 43/138 (31%), Gaps = 30/138 (21%)

Query: 281 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 340
            +  L L +   +          L +    L  L      +              S+   
Sbjct: 18  DVKELVLDNSRSNE----GKLEGLTDEFEELEFLSTINVGLT-------------SIANL 60

Query: 341 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED-DGIRSLIPYFVQA 399
             L  L+ L L  N +       L       PNL  L++S N I+D   I  L       
Sbjct: 61  PKLNKLKKLELSDNRVSGG----LEVLAEKCPNLTHLNLSGNKIKDLSTIEPL------- 109

Query: 400 SERCNPLVELYLENCELS 417
            ++   L  L L NCE++
Sbjct: 110 -KKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 35/170 (20%)

Query: 210 LLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV 269
           L  +    +  L   + + +   +EG+            ++E LS            +V 
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFE-------ELEFLST----------INVG 53

Query: 270 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 329
           +  ++ L     L  L+L    +           L E   +L+ L+LSGN I    +   
Sbjct: 54  LTSIANLPKLNKLKKLELSDNRVSG-----GLEVLAEKCPNLTHLNLSGNKIKDLST--- 105

Query: 330 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA-RDLGSALVHIPNLEILD 378
               +  L   K L++L+ L+L    +   +  R+  +    +P L  LD
Sbjct: 106 ----IEPL---KKLENLKSLDLFNCEVTNLNDYRE--NVFKLLPQLTYLD 146

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 41/167 (24%)

Query: 285 LKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG--KS 342
           L L H +L R       + L    ++L  L LS N +               + +     
Sbjct: 44  LDLSHNNLSRLRAEWTPTRL----TNLHSLLLSHNHLN-------------FISSEAFVP 86

Query: 343 LQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPY-FVQAS 400
           + +LR L+L  N+L       L       +  LE+L + +N I       +    F   +
Sbjct: 87  VPNLRYLDLSSNHL-----HTLDEFLFSDLQALEVLLLYNNHIV-----VVDRNAFEDMA 136

Query: 401 ERCNPLVELYLENCELSG--RGVSQLLDTLSTLRRPPTSLSIADNNL 445
           +    L +LYL   ++S     + +  + L  L      L ++ N L
Sbjct: 137 Q----LQKLYLSQNQISRFPVELIKDGNKLPKLML----LDLSSNKL 175

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 37/141 (26%)

Query: 305 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 364
           L+  + L  L ++ N +                   K+L  +    L    L   + RD 
Sbjct: 81  LKDLTKLEELSVNRNRL-------------------KNLNGIPSACLSRLFLDNNELRDT 121

Query: 365 GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 424
             +L+H+ NLEIL I +N ++   I  L           + L  L L   E++    +  
Sbjct: 122 -DSLIHLKNLEILSIRNNKLKS--IVML--------GFLSKLEVLDLHGNEIT---NTGG 167

Query: 425 LDTLSTLRRPPTSLSIADNNL 445
           L  L  +      + +     
Sbjct: 168 LTRLKKV----NWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 19/88 (21%)

Query: 305 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 364
           L    +L IL +  N +              S+     L  L +L+L GN +        
Sbjct: 124 LIHLKNLEILSIRNNKLK-------------SIVMLGFLSKLEVLDLHGNEITNT----- 165

Query: 365 GSALVHIPNLEILDISDNTIEDDGIRSL 392
              L  +  +  +D++     ++ ++  
Sbjct: 166 -GGLTRLKKVNWIDLTGQKCVNEPVKYQ 192

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 30/158 (18%), Positives = 46/158 (29%), Gaps = 37/158 (23%)

Query: 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339
            SL  L L             F  L     +L  L+L   +I               +  
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGL----FNLKYLNLGMCNI-------------KDMPN 213

Query: 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN---TIEDDGIRSLIPYF 396
              L  L  L + GN+           +   + +L+ L + ++    IE +    L    
Sbjct: 214 LTPLVGLEELEMSGNHF----PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL---- 265

Query: 397 VQASERCNPLVELYLENCELSG--RGVSQLLDTLSTLR 432
                    LVEL L +  LS     +   L  L  L 
Sbjct: 266 -------ASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 27/110 (24%)

Query: 305 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 364
           L    +L IL L  N I        +   L ++       +L  L +  N +        
Sbjct: 66  LSGMENLRILSLGRNLI-------KKIENLDAV-----ADTLEELWISYNQIASL----- 108

Query: 365 GSALVHIPNLEILDISDNTIED-DGIRSLIPYFVQASERCNPLVELYLEN 413
            S +  + NL +L +S+N I +   I  L           + L +L L  
Sbjct: 109 -SGIEKLVNLRVLYMSNNKITNWGEIDKL--------AALDKLEDLLLAG 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	453
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.94
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.94
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.93
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.84
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.84
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.8
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.8
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.8
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.79
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.79
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.79
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.78
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.78
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.78
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.78
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.77
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.77
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.77
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.76
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.75
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.75
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.75
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.75
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.75
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.73
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.73
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.73
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.73
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.73
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.72
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.72
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.72
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.72
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.71
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.69
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.69
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.69
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.69
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.68
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.68
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.67
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.67
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.67
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.66
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.63
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.62
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.6
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.59
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.58
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.58
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.58
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.57
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.56
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.56
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.55
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.55
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.54
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.49
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.48
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.48
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.48
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.47
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.46
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.46
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.45
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.45
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.44
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.43
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.42
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.41
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.4
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.4
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.38
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.38
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.37
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.34
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.32
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.32
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.29
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.27
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.27
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.27
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.27
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.26
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.24
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.21
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.17
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.09
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.02
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.98
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.96
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.79
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.75
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.67
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.58
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.11
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.1
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.09
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.29
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.89
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	94.74
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.51
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.45
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.03
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.42
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	92.5
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	88.89
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	87.79

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.94  E-value=2.2e-26  Score=225.11  Aligned_cols=266  Identities=16%  Similarity=0.128  Sum_probs=217.0

Q ss_pred             ccceeccccccchHHH-----hhhhcCC-CccEEEeccccChHHHHHHHHHHHhc-CCCccEEEcCCCCCChhHHHHHHH
Q 012930          166 YARCLRLQNALCVEET-----CQLLRES-KLQSLVLRWIRFEEHVQALCKLLIQN-SETLASLEFLHCKLSPSFVEGICR  238 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~-----~~l~~~~-~L~~L~Ls~~~~~~~~~~~~~~l~~~-~~~L~~L~L~~n~l~~~~~~~l~~  238 (453)
                      .++.|+++++......     ..+...+ +|++|+|++|.+.......+..+... .++|++|+|++|.+++.++..++.
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            4777888877766533     5566777 89999999999776533333333344 489999999999999999999998


Q ss_pred             HhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcC-CCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcC
Q 012930          239 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSS-GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS  317 (453)
Q Consensus       239 ~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls  317 (453)
                      .+...   .++|++|++++|.++..+..    .+...+.. +++|++|+|++|.+++.++..++.++....++|++|+|+
T Consensus       103 ~l~~~---~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls  175 (362)
T 3goz_A          103 TLAAI---PFTITVLDLGWNDFSSKSSS----EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR  175 (362)
T ss_dssp             HHHTS---CTTCCEEECCSSCGGGSCHH----HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHhC---CCCccEEECcCCcCCcHHHH----HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence            87764   27899999999999986654    67777777 469999999999999989999988876654599999999


Q ss_pred             CCCCCCcccccCcCchHHhhcCCCCC-CcccEEEecCCCCChhhHHHHHHHHhC-CCCccEEeCCCCCCChhHHHhHHHH
Q 012930          318 GNSIGGWLSKYDRSGPLFSLGAGKSL-QSLRLLNLRGNNLCKADARDLGSALVH-IPNLEILDISDNTIEDDGIRSLIPY  395 (453)
Q Consensus       318 ~n~l~~~~~~~~~~~l~~~l~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~N~i~~~g~~~l~~~  395 (453)
                      +|.+++.++    ..+...+.   .+ ++|++|+|++|.|++.|+..++..+.. .++|+.|+|++|.|++.|+..+.  
T Consensus       176 ~n~l~~~~~----~~l~~~l~---~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~--  246 (362)
T 3goz_A          176 GNNLASKNC----AELAKFLA---SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK--  246 (362)
T ss_dssp             TSCGGGSCH----HHHHHHHH---TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH--
T ss_pred             CCCCchhhH----HHHHHHHH---hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH--
Confidence            999986443    22444555   44 599999999999999999999999987 45999999999999998887765  


Q ss_pred             HHhhcCCCCCccEEEccCCC---CChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          396 FVQASERCNPLVELYLENCE---LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       396 l~~~l~~~~~L~~L~L~~n~---l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                        ..+..+++|++|+|++|.   ++..+...+...+.. .++|+.||+++|+|++..+
T Consensus       247 --~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~-l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          247 --LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN-IQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             --HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT-CCEEEEECTTSCBCCGGGC
T ss_pred             --HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc-CCceEEEecCCCcCCCcch
Confidence              446778999999999998   888888888888887 5669999999999998743

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.94  E-value=1.5e-25  Score=226.09  Aligned_cols=265  Identities=24%  Similarity=0.251  Sum_probs=160.0

Q ss_pred             cceeccccccch-----HHHhhhhcCCCccEEEeccccChHH-HHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHh
Q 012930          167 ARCLRLQNALCV-----EETCQLLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSL  240 (453)
Q Consensus       167 l~~l~L~~~~~~-----~~~~~l~~~~~L~~L~Ls~~~~~~~-~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L  240 (453)
                      ++.|+++++.+.     .++..+..+++|++|++++|.+... ...+...+....++|++|++++|.+++.++..+...+
T Consensus        87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  166 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL  166 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred             eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence            555555555444     2344444555566666665554433 2222222233344566666666655555555555444


Q ss_pred             hccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhc-CCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCC
Q 012930          241 CSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN  319 (453)
Q Consensus       241 ~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n  319 (453)
                      ..    +++|++|++++|.+++.+..    .+...+. ..++|++|++++|.+++.+...+...+. .+++|++|++++|
T Consensus       167 ~~----~~~L~~L~L~~n~i~~~~~~----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          167 RA----KPDFKELTVSNNDINEAGVR----VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSN  237 (461)
T ss_dssp             HH----CTTCCEEECCSSBCHHHHHH----HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSS
T ss_pred             hh----CCCCCEEECcCCCcchHHHH----HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCC
Confidence            44    25556666665555442111    2222222 2445666666666655554444444432 2356666666666


Q ss_pred             CCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhh
Q 012930          320 SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA  399 (453)
Q Consensus       320 ~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~  399 (453)
                      .+++.+.    ..++..+.  ..+++|++|++++|.+++.|+..++..+..+++|++|++++|.+++.|...+...+   
T Consensus       238 ~l~~~~~----~~l~~~~~--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l---  308 (461)
T 1z7x_W          238 KLGDVGM----AELCPGLL--HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL---  308 (461)
T ss_dssp             BCHHHHH----HHHHHHHT--STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH---
T ss_pred             cCChHHH----HHHHHHHh--cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh---
Confidence            5553211    11222222  14678888888888888888888888888888888888888888888877776532   


Q ss_pred             cCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          400 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       400 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      ....++|++|++++|.+++.++..++..+.. .++|++|++++|.|++.++
T Consensus       309 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~  358 (461)
T 1z7x_W          309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAGV  358 (461)
T ss_dssp             TSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-CSSCCEEECCSSBCHHHHH
T ss_pred             ccCCccceeeEcCCCCCchHHHHHHHHHHhh-CCCccEEEccCCccccccH
Confidence            2334688999999999988888888888888 5669999999998887654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.94  E-value=1.4e-25  Score=226.42  Aligned_cols=263  Identities=21%  Similarity=0.238  Sum_probs=160.8

Q ss_pred             ccceeccccccch-----HHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCC----CccEEEcCCCCCChhHHHHH
Q 012930          166 YARCLRLQNALCV-----EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSE----TLASLEFLHCKLSPSFVEGI  236 (453)
Q Consensus       166 ~l~~l~L~~~~~~-----~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~----~L~~L~L~~n~l~~~~~~~l  236 (453)
                      .++.++++++...     .++..+..+++|++|+|++|.+.....   ..+...++    +|++|+|++|.+++.+...+
T Consensus        29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV---HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH---HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH---HHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            3455555554443     233444555666666666665443221   11122222    46666666666666555555


Q ss_pred             HHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhc-CCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEE
Q 012930          237 CRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILD  315 (453)
Q Consensus       237 ~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~  315 (453)
                      ...+..    +++|++|++++|.+++.+..    .+...+. ..++|++|++++|.+++..+..+...+.. +++|++|+
T Consensus       106 ~~~l~~----~~~L~~L~Ls~n~i~~~~~~----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~  176 (461)
T 1z7x_W          106 SSTLRT----LPTLQELHLSDNLLGDAGLQ----LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA-KPDFKELT  176 (461)
T ss_dssp             HHHTTS----CTTCCEEECCSSBCHHHHHH----HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-CTTCCEEE
T ss_pred             HHHHcc----CCceeEEECCCCcCchHHHH----HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh-CCCCCEEE
Confidence            555444    35566666666665542111    2333222 24456666666666666555555544433 35666666


Q ss_pred             cCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHH
Q 012930          316 LSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPY  395 (453)
Q Consensus       316 Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~  395 (453)
                      +++|.+++.++    ..++..+..  ..++|++|++++|.+++.++..++..+..+++|++|++++|.+++.|+..+.+.
T Consensus       177 L~~n~i~~~~~----~~l~~~l~~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  250 (461)
T 1z7x_W          177 VSNNDINEAGV----RVLCQGLKD--SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG  250 (461)
T ss_dssp             CCSSBCHHHHH----HHHHHHHHH--SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CcCCCcchHHH----HHHHHHHhc--CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence            66666554221    112222221  235788888888888888888888888888899999999999988888888763


Q ss_pred             HHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          396 FVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       396 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      +   ...+++|++|++++|.+++.++..++..+.. .++|++|++++|.|++.++
T Consensus       251 ~---~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~  301 (461)
T 1z7x_W          251 L---LHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGA  301 (461)
T ss_dssp             H---TSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHH
T ss_pred             H---hcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHH
Confidence            3   4456888888888888888888888888877 4568888888888876543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.94  E-value=1.5e-25  Score=221.08  Aligned_cols=266  Identities=16%  Similarity=0.127  Sum_probs=208.9

Q ss_pred             ccceeccccccchH-----HHhhhhcCCCccEEEeccccCh---H----HHHHHHHHHHhcCCCccEEEcCCCCCChhHH
Q 012930          166 YARCLRLQNALCVE-----ETCQLLRESKLQSLVLRWIRFE---E----HVQALCKLLIQNSETLASLEFLHCKLSPSFV  233 (453)
Q Consensus       166 ~l~~l~L~~~~~~~-----~~~~l~~~~~L~~L~Ls~~~~~---~----~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~  233 (453)
                      .++.|+++++.+..     +...+..+++|++|+|++|.+.   .    .+..+ ...+..+++|++|+|++|.+++.+.
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l-~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL-LQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH-HHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHH-HHHHhhCCcccEEECCCCcCCHHHH
Confidence            57778888776654     3344567899999999997432   1    22222 2334578999999999999999887


Q ss_pred             HHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCC---------CCccEEEcCCCCCChhHHHHHHHHH
Q 012930          234 EGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG---------RSLCSLKLRHCHLDRDFGRMVFSSL  304 (453)
Q Consensus       234 ~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~---------~~L~~L~L~~n~l~~~~~~~l~~~L  304 (453)
                      ..+...+..    +++|++|++++|.++..+    +..++..+..+         ++|++|+|++|++++.....++..+
T Consensus       112 ~~l~~~l~~----~~~L~~L~L~~n~l~~~~----~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          112 EPLIDFLSK----HTPLEHLYLHNNGLGPQA----GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             HHHHHHHHH----CTTCCEEECCSSCCHHHH----HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             HHHHHHHHh----CCCCCEEECcCCCCCHHH----HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            777777665    489999999999997632    23566666666         8999999999999977777777765


Q ss_pred             hhCCCCCCEEEcCCCCCCCcccccCcCchHH-hhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCC
Q 012930          305 LEASSSLSILDLSGNSIGGWLSKYDRSGPLF-SLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT  383 (453)
Q Consensus       305 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~-~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~  383 (453)
                      .. +++|++|++++|.+++.+.    ..+.. .+.   .+++|++|+|++|.+++.|+..++..+..+++|+.|+|++|.
T Consensus       184 ~~-~~~L~~L~L~~n~l~~~g~----~~l~~~~l~---~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          184 QS-HRLLHTVKMVQNGIRPEGI----EHLLLEGLA---YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             HH-CTTCCEEECCSSCCCHHHH----HHHHHTTGG---GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             Hh-CCCcCEEECcCCCCCHhHH----HHHHHHHhh---cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            44 5899999999999984321    11112 444   678999999999999999999999999999999999999999


Q ss_pred             CChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          384 IEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       384 i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      |++.|+..+...+.  .+.+++|++|+|++|.|+..|+..++..+....++|++|++++|.|++.++
T Consensus       256 i~~~~~~~l~~~l~--~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          256 LSARGAAAVVDAFS--KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCHHHHHHHHHHHH--TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CchhhHHHHHHHHh--hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            99999888765321  144799999999999999999999999884423669999999999998763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.94  E-value=3.1e-25  Score=218.77  Aligned_cols=232  Identities=22%  Similarity=0.206  Sum_probs=111.9

Q ss_pred             hcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc-----CCcceeEEEccCCC
Q 012930          185 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK-----RIHKIENLSIDISS  259 (453)
Q Consensus       185 ~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~-----~~~~L~~L~L~~n~  259 (453)
                      ..+++|++|+|++|.+.......+...+..+++|++|+|++|.+++.++..++..+.....     ..++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            4445555555555554432222222233445555555555555555555555544332100     00455555555555


Q ss_pred             CCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcC
Q 012930          260 FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA  339 (453)
Q Consensus       260 l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~  339 (453)
                      ++..++.    .+...+..+++|++|++++|.+++.+...++...+..+++|+.|+|++|.+++.    +...++..+. 
T Consensus       171 l~~~~~~----~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~----g~~~l~~~l~-  241 (386)
T 2ca6_A          171 LENGSMK----EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL----GSSALAIALK-  241 (386)
T ss_dssp             CTGGGHH----HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH----HHHHHHHHGG-
T ss_pred             CCcHHHH----HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH----HHHHHHHHHc-
Confidence            5532222    333445555555555555555555444444441223345555555555555421    1112333343 


Q ss_pred             CCCCCcccEEEecCCCCChhhHHHHHHHHhC--CCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCC
Q 012930          340 GKSLQSLRLLNLRGNNLCKADARDLGSALVH--IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS  417 (453)
Q Consensus       340 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~  417 (453)
                        .+++|++|+|++|.+++.|+..++..+..  +++|+.|+|++|.|++.|+..+...+   ..++++|++|++++|.++
T Consensus       242 --~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l---~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          242 --SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI---DEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             --GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH---HHHCTTCCEEECTTSBSC
T ss_pred             --cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH---HhcCCCceEEEccCCcCC
Confidence              34555555555555555555555555533  55555555555555555554444321   123355555555555555


Q ss_pred             hhh--HHHHHHHHhc
Q 012930          418 GRG--VSQLLDTLST  430 (453)
Q Consensus       418 ~~~--~~~l~~~l~~  430 (453)
                      ..+  +..+...+..
T Consensus       317 ~~~~~~~~l~~~l~~  331 (386)
T 2ca6_A          317 EEDDVVDEIREVFST  331 (386)
T ss_dssp             TTSHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHhhh
Confidence            554  3444444444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.93  E-value=2.7e-25  Score=217.28  Aligned_cols=257  Identities=19%  Similarity=0.175  Sum_probs=207.5

Q ss_pred             ccccccchHHHhhhhcC-CCccEEEeccccChHHHHHHHHHHHhcCC-CccEEEcCCCCCChhHHHHHHHHhhccccCCc
Q 012930          171 RLQNALCVEETCQLLRE-SKLQSLVLRWIRFEEHVQALCKLLIQNSE-TLASLEFLHCKLSPSFVEGICRSLCSKRKRIH  248 (453)
Q Consensus       171 ~L~~~~~~~~~~~l~~~-~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~  248 (453)
                      +++.+........+... .+|++|+|++|.+.......+...+..++ +|++|+|++|.+++.++..++..+...   ++
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~---~~   80 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI---PA   80 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS---CT
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc---CC
Confidence            44555555444444444 66999999999977654433444456777 899999999999999999999987764   38


Q ss_pred             ceeEEEccCCCCCCCCchhhHHHHHHhhcCC-CCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930          249 KIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  327 (453)
Q Consensus       249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  327 (453)
                      +|++|++++|.++..+..    .+...+..+ ++|++|+|++|.+++..+..++.++...+++|++|+|++|.+++.+  
T Consensus        81 ~L~~L~Ls~n~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--  154 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSD----ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS--  154 (362)
T ss_dssp             TCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC--
T ss_pred             CccEEECcCCcCChHHHH----HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH--
Confidence            899999999999985544    677778888 8999999999999998888888876553479999999999998533  


Q ss_pred             cCcCchHHhhcCCCCCC-cccEEEecCCCCChhhHHHHHHHHhCCC-CccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930          328 YDRSGPLFSLGAGKSLQ-SLRLLNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIRSLIPYFVQASERCNP  405 (453)
Q Consensus       328 ~~~~~l~~~l~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~  405 (453)
                        ...++..+.   ..+ +|++|+|++|++++.+...+...+..++ +|+.|+|++|.|++.|+..+...+.   ...++
T Consensus       155 --~~~l~~~l~---~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~---~~~~~  226 (362)
T 3goz_A          155 --SDELIQILA---AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS---SIPNH  226 (362)
T ss_dssp             --HHHHHHHHH---TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH---HSCTT
T ss_pred             --HHHHHHHHh---cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh---cCCCC
Confidence              333556665   334 8999999999999999989999999885 9999999999999999888876431   22369


Q ss_pred             ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCC
Q 012930          406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL  445 (453)
Q Consensus       406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  445 (453)
                      |++|+|++|.|++.|+..+...+.. .++|++|++++|.+
T Consensus       227 L~~L~Ls~N~l~~~~~~~l~~~~~~-l~~L~~L~L~~n~l  265 (362)
T 3goz_A          227 VVSLNLCLNCLHGPSLENLKLLKDS-LKHLQTVYLDYDIV  265 (362)
T ss_dssp             CCEEECCSSCCCCCCHHHHHHTTTT-TTTCSEEEEEHHHH
T ss_pred             ceEEECcCCCCCcHHHHHHHHHHhc-CCCccEEEeccCCc
Confidence            9999999999999999888877777 56699999999983

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.91  E-value=3e-23  Score=200.44  Aligned_cols=234  Identities=16%  Similarity=0.169  Sum_probs=173.8

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.+++.++.....+..+..+++|++|++++|.+...   .....+..+++|++|+|++|.+++..+..++.       
T Consensus        71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-------  140 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-------  140 (336)
T ss_dssp             TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH---HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-------
T ss_pred             cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH---HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-------
Confidence            35556666665555444566779999999999986533   12334678899999999999999888887765       


Q ss_pred             CCcceeEEEccCC-CCCCCCchhhHHHHHHhhcCCCCccEEEcCCC-CCChhHHHHHHHHHhhCCC-CCCEEEcCCC--C
Q 012930          246 RIHKIENLSIDIS-SFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASS-SLSILDLSGN--S  320 (453)
Q Consensus       246 ~~~~L~~L~L~~n-~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~-~L~~L~Ls~n--~  320 (453)
                       +++|++|++++| .+++       ..++..+..+++|++|++++| .+++.....+..    .++ +|++|++++|  .
T Consensus       141 -~~~L~~L~L~~~~~l~~-------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~l~~~L~~L~l~~~~~~  208 (336)
T 2ast_B          141 -NSNLVRLNLSGCSGFSE-------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA----HVSETITQLNLSGYRKN  208 (336)
T ss_dssp             -CTTCSEEECTTCBSCCH-------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH----HSCTTCCEEECCSCGGG
T ss_pred             -CCCCCEEECCCCCCCCH-------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH----hcccCCCEEEeCCCccc
Confidence             588999999999 6665       136677888999999999999 998765444333    367 9999999999  4


Q ss_pred             CCCcccccCcCchHHhhcCCCCCCcccEEEecCCC-CChhhHHHHHHHHhCCCCccEEeCCCC-CCChhHHHhHHHHHHh
Q 012930          321 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN-LCKADARDLGSALVHIPNLEILDISDN-TIEDDGIRSLIPYFVQ  398 (453)
Q Consensus       321 l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~  398 (453)
                      +++.       .++..+.   .+++|++|++++|. +++.    .+..+..+++|+.|++++| .+++.++.        
T Consensus       209 ~~~~-------~l~~~~~---~~~~L~~L~l~~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~--------  266 (336)
T 2ast_B          209 LQKS-------DLSTLVR---RCPNLVHLDLSDSVMLKND----CFQEFFQLNYLQHLSLSRCYDIIPETLL--------  266 (336)
T ss_dssp             SCHH-------HHHHHHH---HCTTCSEEECTTCTTCCGG----GGGGGGGCTTCCEEECTTCTTCCGGGGG--------
T ss_pred             CCHH-------HHHHHHh---hCCCCCEEeCCCCCcCCHH----HHHHHhCCCCCCEeeCCCCCCCCHHHHH--------
Confidence            5531       1445555   57899999999998 7774    3446778899999999999 57765532        


Q ss_pred             hcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930          399 ASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN  451 (453)
Q Consensus       399 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  451 (453)
                      .+..+++|++|++++| +++.+...+...       +..|++++|.+++..|.
T Consensus       267 ~l~~~~~L~~L~l~~~-i~~~~~~~l~~~-------l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          267 ELGEIPTLKTLQVFGI-VPDGTLQLLKEA-------LPHLQINCSHFTTIARP  311 (336)
T ss_dssp             GGGGCTTCCEEECTTS-SCTTCHHHHHHH-------STTSEESCCCSCCTTCS
T ss_pred             HHhcCCCCCEEeccCc-cCHHHHHHHHhh-------CcceEEecccCccccCC
Confidence            2455789999999999 888766655433       45566899999886654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=1.2e-23  Score=225.51  Aligned_cols=245  Identities=22%  Similarity=0.226  Sum_probs=165.2

Q ss_pred             cceeccccccch-HHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          167 ARCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       167 l~~l~L~~~~~~-~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      ++.++++++... ..+..+..+++|+.|++++|.+......    .+..+++|++|++++|.+++..+..+..       
T Consensus       420 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~-------  488 (768)
T 3rgz_A          420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ----ELMYVKTLETLILDFNDLTGEIPSGLSN-------  488 (768)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGG-------
T ss_pred             CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH----HHcCCCCceEEEecCCcccCcCCHHHhc-------
Confidence            444555554443 2334444555555555555554322211    1345566666666666666544444432       


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                       +++|++|++++|.+++        .++..+..+++|++|+|++|++.+..+..+     ..+++|+.|++++|.+++..
T Consensus       489 -l~~L~~L~L~~N~l~~--------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~g~i  554 (768)
T 3rgz_A          489 -CTNLNWISLSNNRLTG--------EIPKWIGRLENLAILKLSNNSFSGNIPAEL-----GDCRSLIWLDLNTNLFNGTI  554 (768)
T ss_dssp             -CTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECCSSCCEEECCGGG-----GGCTTCCEEECCSSEEESBC
T ss_pred             -CCCCCEEEccCCccCC--------cCChHHhcCCCCCEEECCCCcccCcCCHHH-----cCCCCCCEEECCCCccCCcC
Confidence             4667777777777765        455566677777777777777776666554     34677888888888776654


Q ss_pred             cccCcCc--------------------------------------hHHhh---------------------cCCCCCCcc
Q 012930          326 SKYDRSG--------------------------------------PLFSL---------------------GAGKSLQSL  346 (453)
Q Consensus       326 ~~~~~~~--------------------------------------l~~~l---------------------~~~~~~~~L  346 (453)
                      |......                                      .+..+                     ..+..+++|
T Consensus       555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L  634 (768)
T 3rgz_A          555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM  634 (768)
T ss_dssp             CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred             ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence            4211100                                      00000                     012345789


Q ss_pred             cEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHH
Q 012930          347 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD  426 (453)
Q Consensus       347 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~  426 (453)
                      ++|+|++|++++    .+|..++.++.|+.|+|++|.+++.     +|   ..++.++.|+.|+|++|+++..    ++.
T Consensus       635 ~~LdLs~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~-----ip---~~l~~L~~L~~LdLs~N~l~g~----ip~  698 (768)
T 3rgz_A          635 MFLDMSYNMLSG----YIPKEIGSMPYLFILNLGHNDISGS-----IP---DEVGDLRGLNILDLSSNKLDGR----IPQ  698 (768)
T ss_dssp             CEEECCSSCCBS----CCCGGGGGCTTCCEEECCSSCCCSC-----CC---GGGGGCTTCCEEECCSSCCEEC----CCG
T ss_pred             cEEECcCCcccc----cCCHHHhccccCCEEeCcCCccCCC-----CC---hHHhCCCCCCEEECCCCcccCc----CCh
Confidence            999999999997    5888999999999999999999864     77   6788899999999999999975    677


Q ss_pred             HHhcCCCCCcEEECcCCCCCcccccCC
Q 012930          427 TLSTLRRPPTSLSIADNNLGRFCANSG  453 (453)
Q Consensus       427 ~l~~~~~~L~~L~Ls~N~l~~~~~~~~  453 (453)
                      .+..+ +.|++||+++|++++.+|..|
T Consensus       699 ~l~~l-~~L~~L~ls~N~l~g~iP~~~  724 (768)
T 3rgz_A          699 AMSAL-TMLTEIDLSNNNLSGPIPEMG  724 (768)
T ss_dssp             GGGGC-CCCSEEECCSSEEEEECCSSS
T ss_pred             HHhCC-CCCCEEECcCCcccccCCCch
Confidence            88885 569999999999999988653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.87  E-value=7.2e-22  Score=193.03  Aligned_cols=186  Identities=20%  Similarity=0.237  Sum_probs=85.4

Q ss_pred             CCccEEEeccccChHHHH-HHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCch
Q 012930          188 SKLQSLVLRWIRFEEHVQ-ALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  266 (453)
Q Consensus       188 ~~L~~L~Ls~~~~~~~~~-~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~  266 (453)
                      +.|++|+|++|.++.... .+...+....++|++|+|++|.+++.++..++..+       .+|++|++++|.+++.++.
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-------~~L~~L~Ls~n~l~~~~~~  144 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF-------LRARKLGLQLNSLGPEACK  144 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHH-------HTEEEEECCSSCCCHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHH-------HhccHhhcCCCCCCHHHHH
Confidence            445555555555443322 22222222334555555555555555555554442       3345555555555442222


Q ss_pred             hhHHHHHHhhc-CCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930          267 SVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  345 (453)
Q Consensus       267 ~i~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~  345 (453)
                          .+...+. .+++|++|+|++|.+++.+...++.++.. +++|++|+|++|.|++.+    ...++..+.   .+++
T Consensus       145 ----~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g----~~~L~~~L~---~~~~  212 (372)
T 3un9_A          145 ----DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEG----LELLAAQLD---RNRQ  212 (372)
T ss_dssp             ----HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHH----HHHHHHHGG---GCSC
T ss_pred             ----HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHH----HHHHHHHHh---cCCC
Confidence                3333332 24455555555555555444444444432 244555555555544321    111223333   2234


Q ss_pred             ccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhH
Q 012930          346 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSL  392 (453)
Q Consensus       346 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l  392 (453)
                      |++|+|++|.|++.|+..++.++..+++|++|+|++|.|++.|+..+
T Consensus       213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            55555555555555554555555455555555555555555554444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.86  E-value=4.7e-24  Score=204.24  Aligned_cols=231  Identities=18%  Similarity=0.164  Sum_probs=153.3

Q ss_pred             ccceeccccccch---HHHhhhhcCCCccEEEecc-ccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhh
Q 012930          166 YARCLRLQNALCV---EETCQLLRESKLQSLVLRW-IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLC  241 (453)
Q Consensus       166 ~l~~l~L~~~~~~---~~~~~l~~~~~L~~L~Ls~-~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~  241 (453)
                      .++.++++++.+.   .++..+..+++|++|++++ |.+....+.    .+..+++|++|+|++|.+++..+..+..   
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~---  123 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQ---  123 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGG---
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh----hHhcCCCCCEEECcCCeeCCcCCHHHhC---
Confidence            4566666666555   3556667778888888874 654432222    1456778888888888777555555443   


Q ss_pred             ccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCC-CCCEEEcCCCC
Q 012930          242 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASS-SLSILDLSGNS  320 (453)
Q Consensus       242 ~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~-~L~~L~Ls~n~  320 (453)
                           +.+|++|++++|.++.        .++..+..+++|++|++++|.+.+..+..+     ..+. +|++|++++|.
T Consensus       124 -----l~~L~~L~Ls~N~l~~--------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          124 -----IKTLVTLDFSYNALSG--------TLPPSISSLPNLVGITFDGNRISGAIPDSY-----GSFSKLFTSMTISRNR  185 (313)
T ss_dssp             -----CTTCCEEECCSSEEES--------CCCGGGGGCTTCCEEECCSSCCEEECCGGG-----GCCCTTCCEEECCSSE
T ss_pred             -----CCCCCEEeCCCCccCC--------cCChHHhcCCCCCeEECcCCcccCcCCHHH-----hhhhhcCcEEECcCCe
Confidence                 5778888888887775        355566777888888888887776555544     2344 77888888887


Q ss_pred             CCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhc
Q 012930          321 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS  400 (453)
Q Consensus       321 l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l  400 (453)
                      +++..+        ..+.   .+. |++|++++|.+++    .++..+..+++|+.|++++|.++..     .|    .+
T Consensus       186 l~~~~~--------~~~~---~l~-L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~-----~~----~~  240 (313)
T 1ogq_A          186 LTGKIP--------PTFA---NLN-LAFVDLSRNMLEG----DASVLFGSDKNTQKIHLAKNSLAFD-----LG----KV  240 (313)
T ss_dssp             EEEECC--------GGGG---GCC-CSEEECCSSEEEE----CCGGGCCTTSCCSEEECCSSEECCB-----GG----GC
T ss_pred             eeccCC--------hHHh---CCc-ccEEECcCCcccC----cCCHHHhcCCCCCEEECCCCceeee-----cC----cc
Confidence            775444        4555   233 7788888887765    3556677777888888888877642     32    25


Q ss_pred             CCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930          401 ERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN  451 (453)
Q Consensus       401 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  451 (453)
                      ..+++|++|+|++|+|+..    ++..+..+ ++|++|++++|.|++.+|.
T Consensus       241 ~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          241 GLSKNLNGLDLRNNRIYGT----LPQGLTQL-KFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CCCTTCCEEECCSSCCEEC----CCGGGGGC-TTCCEEECCSSEEEEECCC
T ss_pred             cccCCCCEEECcCCcccCc----CChHHhcC-cCCCEEECcCCcccccCCC
Confidence            5667788888888877643    45556663 4588888888877766654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.85  E-value=1e-22  Score=218.17  Aligned_cols=233  Identities=24%  Similarity=0.272  Sum_probs=173.0

Q ss_pred             ccceeccccccch-HHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~-~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      .++.+++.++... .++..+..+++|+.|++++|.+......    .+..+++|++|++++|.+++..+..+..      
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~~~~------  464 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS----SLGSLSKLRDLKLWLNMLEGEIPQELMY------  464 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGG------
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH----HHhcCCCCCEEECCCCcccCcCCHHHcC------
Confidence            3666777766655 3556677778888888888875533222    2456778888888888887666555543      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                        +++|++|++++|.++.        .++..+..+++|++|+|++|++.+..+..+     ..+++|++|++++|.+++.
T Consensus       465 --l~~L~~L~L~~N~l~~--------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~  529 (768)
T 3rgz_A          465 --VKTLETLILDFNDLTG--------EIPSGLSNCTNLNWISLSNNRLTGEIPKWI-----GRLENLAILKLSNNSFSGN  529 (768)
T ss_dssp             --CTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECCSSCCCSCCCGGG-----GGCTTCCEEECCSSCCEEE
T ss_pred             --CCCceEEEecCCcccC--------cCCHHHhcCCCCCEEEccCCccCCcCChHH-----hcCCCCCEEECCCCcccCc
Confidence              5778888888888876        456667788888888888888887666654     3468888888888888765


Q ss_pred             ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHH-------------------------------------
Q 012930          325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA-------------------------------------  367 (453)
Q Consensus       325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-------------------------------------  367 (453)
                      .|        ..++   .+++|++|++++|+++.    .+|..                                     
T Consensus       530 ~p--------~~l~---~l~~L~~L~Ls~N~l~g----~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (768)
T 3rgz_A          530 IP--------AELG---DCRSLIWLDLNTNLFNG----TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL  594 (768)
T ss_dssp             CC--------GGGG---GCTTCCEEECCSSEEES----BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred             CC--------HHHc---CCCCCCEEECCCCccCC----cCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence            54        6666   66888999999887763    12322                                     


Q ss_pred             ---------------------------------HhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCC
Q 012930          368 ---------------------------------LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC  414 (453)
Q Consensus       368 ---------------------------------l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n  414 (453)
                                                       +..+++|+.|||++|++++.     +|   ..++.++.|+.|+|++|
T Consensus       595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~-----ip---~~l~~l~~L~~L~Ls~N  666 (768)
T 3rgz_A          595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY-----IP---KEIGSMPYLFILNLGHN  666 (768)
T ss_dssp             ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC-----CC---GGGGGCTTCCEEECCSS
T ss_pred             ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc-----CC---HHHhccccCCEEeCcCC
Confidence                                             23356788999999998864     66   66888899999999999


Q ss_pred             CCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930          415 ELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN  451 (453)
Q Consensus       415 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  451 (453)
                      +++..    ++..+..+ +.|++|||++|++++.+|.
T Consensus       667 ~l~g~----ip~~l~~L-~~L~~LdLs~N~l~g~ip~  698 (768)
T 3rgz_A          667 DISGS----IPDEVGDL-RGLNILDLSSNKLDGRIPQ  698 (768)
T ss_dssp             CCCSC----CCGGGGGC-TTCCEEECCSSCCEECCCG
T ss_pred             ccCCC----CChHHhCC-CCCCEEECCCCcccCcCCh
Confidence            99865    67788885 5699999999999988775

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.84  E-value=1.2e-21  Score=197.32  Aligned_cols=255  Identities=17%  Similarity=0.122  Sum_probs=128.1

Q ss_pred             ccceeccccccchHH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHH-HHHHhhcc
Q 012930          166 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEG-ICRSLCSK  243 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~-l~~~L~~~  243 (453)
                      .++.|+++++..... +..+.++++|++|++++|.+......  ...+..+++|++|+|++|.++...+.. +..     
T Consensus        80 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-----  152 (455)
T 3v47_A           80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASFFLN-----  152 (455)
T ss_dssp             TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH--SSTTTTCTTCCEEECCSSBCCSCCCCGGGGG-----
T ss_pred             cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccC--cccccCcccCCEEECCCCccCccCcccccCC-----
Confidence            355566665555443 33445556666666666654432110  011334556666666666555443322 111     


Q ss_pred             ccCCcceeEEEccCCCCCCCCch--------------------------hhHHHHHHhhcCCCCccEEEcCCCCCChhHH
Q 012930          244 RKRIHKIENLSIDISSFIENCPS--------------------------SVVVELVSFLSSGRSLCSLKLRHCHLDRDFG  297 (453)
Q Consensus       244 ~~~~~~L~~L~L~~n~l~~~~~~--------------------------~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  297 (453)
                         +++|++|++++|.++.....                          .+.......+..+++|++|++++|.+.+..+
T Consensus       153 ---l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  229 (455)
T 3v47_A          153 ---MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA  229 (455)
T ss_dssp             ---CTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred             ---CCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence               35555555555555442211                          1111111223345678888888888777666


Q ss_pred             HHHHHHHhh----------------------------------CCCCCCEEEcCCCCCCCcccccCc------------C
Q 012930          298 RMVFSSLLE----------------------------------ASSSLSILDLSGNSIGGWLSKYDR------------S  331 (453)
Q Consensus       298 ~~l~~~L~~----------------------------------~~~~L~~L~Ls~n~l~~~~~~~~~------------~  331 (453)
                      ..+...+..                                  ..++|++|++++|.+++..+....            .
T Consensus       230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  309 (455)
T 3v47_A          230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN  309 (455)
T ss_dssp             HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             hhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC
Confidence            666543110                                  012444555555444432220000            0


Q ss_pred             ----chHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc
Q 012930          332 ----GPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV  407 (453)
Q Consensus       332 ----~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~  407 (453)
                          ..+..+.   .+++|++|+|++|.+++    ..+..+..+++|+.|+|++|.+++.     .|   ..+..+++|+
T Consensus       310 ~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~  374 (455)
T 3v47_A          310 EINKIDDNAFW---GLTHLLKLNLSQNFLGS----IDSRMFENLDKLEVLDLSYNHIRAL-----GD---QSFLGLPNLK  374 (455)
T ss_dssp             CCCEECTTTTT---TCTTCCEEECCSSCCCE----ECGGGGTTCTTCCEEECCSSCCCEE-----CT---TTTTTCTTCC
T ss_pred             cccccChhHhc---CcccCCEEECCCCccCC----cChhHhcCcccCCEEECCCCccccc-----Ch---hhcccccccc
Confidence                0012222   45666666666666655    2344556666677777777766652     22   4456667777


Q ss_pred             EEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          408 ELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       408 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      +|++++|+|+..    ....+.. .++|++|++++|++++..+
T Consensus       375 ~L~L~~N~l~~~----~~~~~~~-l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          375 ELALDTNQLKSV----PDGIFDR-LTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             EEECCSSCCSCC----CTTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred             EEECCCCccccC----CHhHhcc-CCcccEEEccCCCcccCCC
Confidence            777777776653    1222334 2447777777777766554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.84  E-value=4.3e-21  Score=193.18  Aligned_cols=113  Identities=15%  Similarity=0.156  Sum_probs=59.9

Q ss_pred             ccceeccccccch-HH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHH--HHHHhh
Q 012930          166 YARCLRLQNALCV-EE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEG--ICRSLC  241 (453)
Q Consensus       166 ~l~~l~L~~~~~~-~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~--l~~~L~  241 (453)
                      .++.|+++++... .+ +..+.++++|++|+|++|.+......    .+..+++|++|+|++|.+++..+..  +..   
T Consensus        55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~---  127 (455)
T 3v47_A           55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG----AFNGLANLEVLTLTQCNLDGAVLSGNFFKP---  127 (455)
T ss_dssp             TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT----TTTTCTTCCEEECTTSCCBTHHHHSSTTTT---
T ss_pred             cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh----hccCcccCCEEeCCCCCCCccccCcccccC---
Confidence            4566666665443 12 23345556666666666664433211    1345566666666666666543332  221   


Q ss_pred             ccccCCcceeEEEccCCCCCCCCchhhHHHHHH-hhcCCCCccEEEcCCCCCChhHHH
Q 012930          242 SKRKRIHKIENLSIDISSFIENCPSSVVVELVS-FLSSGRSLCSLKLRHCHLDRDFGR  298 (453)
Q Consensus       242 ~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~  298 (453)
                           +++|++|++++|.++..        .+. .+.++++|++|++++|.+.+..+.
T Consensus       128 -----l~~L~~L~L~~n~l~~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~  172 (455)
T 3v47_A          128 -----LTSLEMLVLRDNNIKKI--------QPASFFLNMRRFHVLDLTFNKVKSICEE  172 (455)
T ss_dssp             -----CTTCCEEECCSSBCCSC--------CCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred             -----cccCCEEECCCCccCcc--------CcccccCCCCcccEEeCCCCcccccChh
Confidence                 45666666666666551        122 245566666666666666554333

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.84  E-value=5.8e-20  Score=179.53  Aligned_cols=212  Identities=17%  Similarity=0.139  Sum_probs=171.2

Q ss_pred             CCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChh
Q 012930          216 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  295 (453)
Q Consensus       216 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~  295 (453)
                      +.|++|+|++|.|++.....++..+...   +++|++|+|++|.+++.++.    .+.   ..+++|++|+|++|.+++.
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~---~~~L~~L~Ls~n~l~~~~~~----~l~---~~L~~L~~L~Ls~n~l~~~  141 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSG---RHALDEVNLASCQLDPAGLR----TLL---PVFLRARKLGLQLNSLGPE  141 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSC---SSCEEEEECTTCCCCHHHHH----HTH---HHHHTEEEEECCSSCCCHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhC---CCCceEEEecCCCCCHHHHH----HHH---HHHHhccHhhcCCCCCCHH
Confidence            5799999999999999999999988865   47899999999999873332    222   2345899999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCcc
Q 012930          296 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE  375 (453)
Q Consensus       296 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  375 (453)
                      ++..++.++....++|++|+|++|.|++.    ++..++..+.   .+++|++|+|++|.|++.|+..++.++..+++|+
T Consensus       142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~----~~~~l~~~L~---~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~  214 (372)
T 3un9_A          142 ACKDLRDLLLHDQCQITTLRLSNNPLTAA----GVAVLMEGLA---GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ  214 (372)
T ss_dssp             HHHHHHHHHHSTTCCCCEEECCSSCCHHH----HHHHHHHHHH---TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCC
T ss_pred             HHHHHHHHHHhcCCccceeeCCCCCCChH----HHHHHHHHHh---cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcC
Confidence            99999998877679999999999999853    2334556666   5688999999999999999999999999999999


Q ss_pred             EEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEE--CcCCCCCcc
Q 012930          376 ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLS--IADNNLGRF  448 (453)
Q Consensus       376 ~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~--Ls~N~l~~~  448 (453)
                      +|+|++|.|++.|+..++..    +..+++|++|+|++|.|++.|+..+..........|+.+.  +..|.++++
T Consensus       215 ~L~Ls~N~i~~~g~~~l~~~----L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          215 ELNVAYNGAGDTAALALARA----AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             EEECCSSCCCHHHHHHHHHH----HHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred             eEECCCCCCCHHHHHHHHHH----HHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence            99999999999998888754    5566899999999999999999988775443112388888  888877654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=3e-21  Score=186.05  Aligned_cols=229  Identities=17%  Similarity=0.185  Sum_probs=122.0

Q ss_pred             ccceeccccccchHH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      .++.++++++....+ +..+..+++|++|++++|.+......       ..++|++|++++|.++...+..+..      
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~------  143 (330)
T 1xku_A           77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-------MPKTLQELRVHENEITKVRKSVFNG------  143 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-------CCTTCCEEECCSSCCCBBCHHHHTT------
T ss_pred             CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-------hcccccEEECCCCcccccCHhHhcC------
Confidence            355555555554443 33444555555555555554321110       1145555666655555544444432      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                        +++|+.|++++|.+...+      ..+..+..+++|++|++++|.+.. .+..+       .++|++|++++|.+++.
T Consensus       144 --l~~L~~L~l~~n~l~~~~------~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~-------~~~L~~L~l~~n~l~~~  207 (330)
T 1xku_A          144 --LNQMIVVELGTNPLKSSG------IENGAFQGMKKLSYIRIADTNITT-IPQGL-------PPSLTELHLDGNKITKV  207 (330)
T ss_dssp             --CTTCCEEECCSSCCCGGG------BCTTGGGGCTTCCEEECCSSCCCS-CCSSC-------CTTCSEEECTTSCCCEE
T ss_pred             --CccccEEECCCCcCCccC------cChhhccCCCCcCEEECCCCcccc-CCccc-------cccCCEEECCCCcCCcc
Confidence              355666666666554211      122344555666666666666554 22211       24566666666666543


Q ss_pred             ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930          325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  404 (453)
Q Consensus       325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~  404 (453)
                      .+        ..+.   .+++|++|++++|.+++.    .+..+..+++|+.|++++|.++.      +|   ..+..++
T Consensus       208 ~~--------~~~~---~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~------lp---~~l~~l~  263 (330)
T 1xku_A          208 DA--------ASLK---GLNNLAKLGLSFNSISAV----DNGSLANTPHLRELHLNNNKLVK------VP---GGLADHK  263 (330)
T ss_dssp             CT--------GGGT---TCTTCCEEECCSSCCCEE----CTTTGGGSTTCCEEECCSSCCSS------CC---TTTTTCS
T ss_pred             CH--------HHhc---CCCCCCEEECCCCcCcee----ChhhccCCCCCCEEECCCCcCcc------CC---hhhccCC
Confidence            22        3343   556777777777777752    23356667777777777777764      44   4456667


Q ss_pred             CccEEEccCCCCChhhHHHHHHHHh-cCCCCCcEEECcCCCCCc
Q 012930          405 PLVELYLENCELSGRGVSQLLDTLS-TLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       405 ~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~  447 (453)
                      +|++|++++|+|+..+...+..... .....|+.|++++|.++.
T Consensus       264 ~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            7777777777776643222111000 002346777777777653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.82  E-value=8.5e-21  Score=184.67  Aligned_cols=231  Identities=16%  Similarity=0.122  Sum_probs=144.8

Q ss_pred             ccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      .++.++++++....++. .+.++++|++|++++|.+......    .+.++++|++|++++|.++......+..      
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------  122 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED----SFSSLGSLEHLDLSYNYLSNLSSSWFKP------  122 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCSSCCHHHHTT------
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh----hcCCCCCCCEEECCCCcCCcCCHhHhCC------
Confidence            57777777777666554 456678888888888876543222    2456778888888888887655554433      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHH--hhcCCCCccEEEcCCCC-CChhHHHHHHHHHhhCCCCCCEEEcCCCCC
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSI  321 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~--~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l  321 (453)
                        +++|++|++++|.++.         ++.  .+..+++|++|++++|. +....+..+     ..+++|++|++++|.+
T Consensus       123 --l~~L~~L~L~~n~l~~---------l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          123 --LSSLTFLNLLGNPYKT---------LGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-----AGLTFLEELEIDASDL  186 (353)
T ss_dssp             --CTTCSEEECTTCCCSS---------SCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-----TTCCEEEEEEEEETTC
T ss_pred             --CccCCEEECCCCCCcc---------cCchhhhccCCCCcEEECCCCccccccCHHHc-----cCCCCCCEEECCCCCc
Confidence              5778888888888775         222  45677888888888873 554323222     3467788888888887


Q ss_pred             CCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHH-HHhCCCCccEEeCCCCCCChh-------------
Q 012930          322 GGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDD-------------  387 (453)
Q Consensus       322 ~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~-------------  387 (453)
                      ++..+        ..+.   .+++|++|++++|.++.     ++. .+..+++|+.|++++|.+++.             
T Consensus       187 ~~~~~--------~~l~---~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~  250 (353)
T 2z80_A          187 QSYEP--------KSLK---SIQNVSHLILHMKQHIL-----LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL  250 (353)
T ss_dssp             CEECT--------TTTT---TCSEEEEEEEECSCSTT-----HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred             CccCH--------HHHh---ccccCCeecCCCCcccc-----chhhhhhhcccccEEECCCCccccccccccccccccch
Confidence            76433        3344   56778888888887765     343 334567777777777776652             


Q ss_pred             --------------HHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHH-hcCCCCCcEEECcCCCCCcc
Q 012930          388 --------------GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL-STLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       388 --------------g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~l~~~  448 (453)
                                    ++..+ |   ..+..+++|++|++++|+|+.     ++..+ .. .++|++|++++|++...
T Consensus       251 l~~l~L~~~~l~~~~l~~l-~---~~l~~l~~L~~L~Ls~N~l~~-----i~~~~~~~-l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          251 IKKFTFRNVKITDESLFQV-M---KLLNQISGLLELEFSRNQLKS-----VPDGIFDR-LTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CCEEEEESCBCCHHHHHHH-H---HHHHTCTTCCEEECCSSCCCC-----CCTTTTTT-CTTCCEEECCSSCBCCC
T ss_pred             hhccccccccccCcchhhh-H---HHHhcccCCCEEECCCCCCCc-----cCHHHHhc-CCCCCEEEeeCCCccCc
Confidence                          22222 1   234455666666666666654     23332 33 23466666666666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.82  E-value=1.4e-21  Score=186.82  Aligned_cols=219  Identities=17%  Similarity=0.082  Sum_probs=160.3

Q ss_pred             cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCc
Q 012930          186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  265 (453)
Q Consensus       186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~  265 (453)
                      .+++|++|++++|.+.......+  +...+++|++|+|++|.+++. +..+.......   .++|++|++++|.++.   
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~---~~~L~~L~L~~N~l~~---  163 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPL--LEATGPDLNILNLRNVSWATR-DAWLAELQQWL---KPGLKVLSIAQAHSLN---  163 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCS--SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTC---CTTCCEEEEESCSCCC---
T ss_pred             CcCCccEEEccCCcccchhHHHH--HHhcCCCccEEEccCCCCcch-hHHHHHHHHhh---cCCCcEEEeeCCCCcc---
Confidence            67999999999999764322110  025789999999999999876 55554421111   2789999999999988   


Q ss_pred             hhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930          266 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  345 (453)
Q Consensus       266 ~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~  345 (453)
                           ..+..+..+++|++|+|++|++.+.... +....+..+++|++|++++|.+++...      ++..+.  ..+++
T Consensus       164 -----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~~--~~l~~  229 (312)
T 1wwl_A          164 -----FSCEQVRVFPALSTLDLSDNPELGERGL-ISALCPLKFPTLQVLALRNAGMETPSG------VCSALA--AARVQ  229 (312)
T ss_dssp             -----CCTTTCCCCSSCCEEECCSCTTCHHHHH-HHHSCTTSCTTCCEEECTTSCCCCHHH------HHHHHH--HTTCC
T ss_pred             -----chHHHhccCCCCCEEECCCCCcCcchHH-HHHHHhccCCCCCEEECCCCcCcchHH------HHHHHH--hcCCC
Confidence                 3446778999999999999998764221 111112567999999999999985221      222221  15689


Q ss_pred             ccEEEecCCCCChhhHHHHH-HHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHH
Q 012930          346 LRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL  424 (453)
Q Consensus       346 L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l  424 (453)
                      |++|++++|++++.    .+ ..+..+++|+.|+|++|.|+.      +|   ..+.  ++|++|+|++|+|++.     
T Consensus       230 L~~L~Ls~N~l~~~----~~~~~~~~l~~L~~L~Ls~N~l~~------ip---~~~~--~~L~~L~Ls~N~l~~~-----  289 (312)
T 1wwl_A          230 LQGLDLSHNSLRDA----AGAPSCDWPSQLNSLNLSFTGLKQ------VP---KGLP--AKLSVLDLSYNRLDRN-----  289 (312)
T ss_dssp             CSEEECTTSCCCSS----CCCSCCCCCTTCCEEECTTSCCSS------CC---SSCC--SEEEEEECCSSCCCSC-----
T ss_pred             CCEEECCCCcCCcc----cchhhhhhcCCCCEEECCCCccCh------hh---hhcc--CCceEEECCCCCCCCC-----
Confidence            99999999999873    22 334567899999999999985      66   3344  7999999999999884     


Q ss_pred             HHHHhcCCCCCcEEECcCCCCCccc
Q 012930          425 LDTLSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       425 ~~~l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                      +. +..+ ++|++|++++|+|++.+
T Consensus       290 p~-~~~l-~~L~~L~L~~N~l~~~~  312 (312)
T 1wwl_A          290 PS-PDEL-PQVGNLSLKGNPFLDSE  312 (312)
T ss_dssp             CC-TTTS-CEEEEEECTTCTTTCCC
T ss_pred             hh-HhhC-CCCCEEeccCCCCCCCC
Confidence            33 5553 55999999999998853

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=6.9e-22  Score=190.36  Aligned_cols=224  Identities=19%  Similarity=0.190  Sum_probs=148.6

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.++++++.+..++..+..+++|++|+|++|.+.. ++    ..+..+++|++|+|++|.++ ..+..+..       
T Consensus        82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~-lp----~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-------  148 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME-LP----DTMQQFAGLETLTLARNPLR-ALPASIAS-------  148 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC-CC----SCGGGGTTCSEEEEESCCCC-CCCGGGGG-------
T ss_pred             ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc-hh----HHHhccCCCCEEECCCCccc-cCcHHHhc-------
Confidence            5667777777776677777777788888888877652 21    12356677888888888776 33333332       


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhh---------cCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFL---------SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDL  316 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l---------~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~L  316 (453)
                       +.+|++|++++|.+..        .++..+         .++++|++|+|++|.++. .+..+     ..+++|++|++
T Consensus       149 -l~~L~~L~L~~n~~~~--------~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l-----~~l~~L~~L~L  213 (328)
T 4fcg_A          149 -LNRLRELSIRACPELT--------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASI-----ANLQNLKSLKI  213 (328)
T ss_dssp             -CTTCCEEEEEEETTCC--------CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGGG-----GGCTTCCEEEE
T ss_pred             -CcCCCEEECCCCCCcc--------ccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHhh-----cCCCCCCEEEc
Confidence             4778888888776655        233333         337788888888887763 44433     34677888888


Q ss_pred             CCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHH
Q 012930          317 SGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYF  396 (453)
Q Consensus       317 s~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l  396 (453)
                      ++|.+++         ++..++   .+++|++|++++|++..    .+|..+..+++|+.|++++|.+.+.     +|  
T Consensus       214 ~~N~l~~---------l~~~l~---~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~-----~p--  270 (328)
T 4fcg_A          214 RNSPLSA---------LGPAIH---HLPKLEELDLRGCTALR----NYPPIFGGRAPLKRLILKDCSNLLT-----LP--  270 (328)
T ss_dssp             ESSCCCC---------CCGGGG---GCTTCCEEECTTCTTCC----BCCCCTTCCCCCCEEECTTCTTCCB-----CC--
T ss_pred             cCCCCCc---------Cchhhc---cCCCCCEEECcCCcchh----hhHHHhcCCCCCCEEECCCCCchhh-----cc--
Confidence            8887775         334455   56778888888877665    3566677777888888887766543     44  


Q ss_pred             HhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930          397 VQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  446 (453)
Q Consensus       397 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  446 (453)
                       ..+..+++|++|+|++|++...    ++..+..+ ++|+.+++..|.+.
T Consensus       271 -~~~~~l~~L~~L~L~~n~~~~~----iP~~l~~L-~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          271 -LDIHRLTQLEKLDLRGCVNLSR----LPSLIAQL-PANCIILVPPHLQA  314 (328)
T ss_dssp             -TTGGGCTTCCEEECTTCTTCCC----CCGGGGGS-CTTCEEECCGGGSC
T ss_pred             -hhhhcCCCCCEEeCCCCCchhh----ccHHHhhc-cCceEEeCCHHHHH
Confidence             4466667888888888776654    66677774 44778877766543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=4.6e-21  Score=180.81  Aligned_cols=207  Identities=20%  Similarity=0.177  Sum_probs=118.1

Q ss_pred             CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCC-CCCCCch
Q 012930          188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPS  266 (453)
Q Consensus       188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~-l~~~~~~  266 (453)
                      ++|++|++++|.+......    .+..+++|++|++++|.++...+..+..        +++|++|++++|. +..    
T Consensus        32 ~~l~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~~l~~----   95 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAFTG--------LALLEQLDLSDNAQLRS----   95 (285)
T ss_dssp             TTCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTT--------CTTCCEEECCSCTTCCC----
T ss_pred             CCceEEEeeCCcCCccCHH----HcccCCCCCEEECCCCccceeCHhhcCC--------ccCCCEEeCCCCCCccc----
Confidence            4666677766665433221    1345666777777777666544444432        4666777777665 544    


Q ss_pred             hhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcc
Q 012930          267 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  346 (453)
Q Consensus       267 ~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L  346 (453)
                          ..+..+..+++|++|++++|.+.+..+..+     ..+++|++|++++|.+++..+        ..+.   .+++|
T Consensus        96 ----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~--------~~~~---~l~~L  155 (285)
T 1ozn_A           96 ----VDPATFHGLGRLHTLHLDRCGLQELGPGLF-----RGLAALQYLYLQDNALQALPD--------DTFR---DLGNL  155 (285)
T ss_dssp             ----CCTTTTTTCTTCCEEECTTSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCT--------TTTT---TCTTC
T ss_pred             ----cCHHHhcCCcCCCEEECCCCcCCEECHhHh-----hCCcCCCEEECCCCcccccCH--------hHhc---cCCCc
Confidence                123445566677777777776665333222     335667777777776664322        2222   45667


Q ss_pred             cEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHH
Q 012930          347 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD  426 (453)
Q Consensus       347 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~  426 (453)
                      ++|++++|+++.    ..+..+..+++|+.|++++|.+++.     .|   ..+..+++|++|++++|.++..    .+.
T Consensus       156 ~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~-----~~---~~~~~l~~L~~L~l~~n~l~~~----~~~  219 (285)
T 1ozn_A          156 THLFLHGNRISS----VPERAFRGLHSLDRLLLHQNRVAHV-----HP---HAFRDLGRLMTLYLFANNLSAL----PTE  219 (285)
T ss_dssp             CEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEE-----CT---TTTTTCTTCCEEECCSSCCSCC----CHH
T ss_pred             cEEECCCCcccc----cCHHHhcCccccCEEECCCCccccc-----CH---hHccCcccccEeeCCCCcCCcC----CHH
Confidence            777777776665    1122455666777777777766652     22   3455566677777777766653    223


Q ss_pred             HHhcCCCCCcEEECcCCCCCc
Q 012930          427 TLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       427 ~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      .+.. .++|++|++++|++..
T Consensus       220 ~~~~-l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          220 ALAP-LRALQYLRLNDNPWVC  239 (285)
T ss_dssp             HHTT-CTTCCEEECCSSCEEC
T ss_pred             Hccc-CcccCEEeccCCCccC
Confidence            3444 2447777777776543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.82  E-value=6.4e-21  Score=193.17  Aligned_cols=230  Identities=19%  Similarity=0.103  Sum_probs=123.8

Q ss_pred             ccceeccccccchHHHhh-hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      .++.|+++++.+..++.. +.++++|++|+|++|.+......    .+..+++|++|++++|.++...+..+..      
T Consensus        81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~------  150 (477)
T 2id5_A           81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSG------  150 (477)
T ss_dssp             TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTT------
T ss_pred             cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccC------
Confidence            355555555555444433 23445555666655554332111    1344555666666655555443333322      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                        +.+|++|++++|.++.        .....+..+++|+.|++++|.+.+..+..     +..+++|+.|++++|...+.
T Consensus       151 --l~~L~~L~l~~n~l~~--------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-----~~~l~~L~~L~l~~~~~~~~  215 (477)
T 2id5_A          151 --LNSLEQLTLEKCNLTS--------IPTEALSHLHGLIVLRLRHLNINAIRDYS-----FKRLYRLKVLEISHWPYLDT  215 (477)
T ss_dssp             --CTTCCEEEEESCCCSS--------CCHHHHTTCTTCCEEEEESCCCCEECTTC-----SCSCTTCCEEEEECCTTCCE
T ss_pred             --CCCCCEEECCCCcCcc--------cChhHhcccCCCcEEeCCCCcCcEeChhh-----cccCcccceeeCCCCccccc
Confidence              3556666666665554        22334455566666666666555422211     13345566666666554433


Q ss_pred             ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930          325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  404 (453)
Q Consensus       325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~  404 (453)
                      .+        ....   ...+|++|++++|+++..    -+..+..+++|+.|+|++|.|++      ++.  ..+..++
T Consensus       216 ~~--------~~~~---~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~~--~~~~~l~  272 (477)
T 2id5_A          216 MT--------PNCL---YGLNLTSLSITHCNLTAV----PYLAVRHLVYLRFLNLSYNPIST------IEG--SMLHELL  272 (477)
T ss_dssp             EC--------TTTT---TTCCCSEEEEESSCCCSC----CHHHHTTCTTCCEEECCSSCCCE------ECT--TSCTTCT
T ss_pred             cC--------cccc---cCccccEEECcCCccccc----CHHHhcCccccCeeECCCCcCCc------cCh--hhccccc
Confidence            22        2111   223677777777777751    22456777788888888887775      221  3456667


Q ss_pred             CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930          405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  448 (453)
                      +|++|+|++|+++..    .+..+.. .++|+.|+|++|.|++-
T Consensus       273 ~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~N~l~~~  311 (477)
T 2id5_A          273 RLQEIQLVGGQLAVV----EPYAFRG-LNYLRVLNVSGNQLTTL  311 (477)
T ss_dssp             TCCEEECCSSCCSEE----CTTTBTT-CTTCCEEECCSSCCSCC
T ss_pred             cCCEEECCCCccceE----CHHHhcC-cccCCEEECCCCcCcee
Confidence            777777777776664    2334444 24477777777776653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=4.4e-22  Score=191.71  Aligned_cols=211  Identities=21%  Similarity=0.224  Sum_probs=122.4

Q ss_pred             CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchh
Q 012930          188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  267 (453)
Q Consensus       188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~  267 (453)
                      .+++.|+|++|.+......     +..+++|++|+|++|.++ ..+..+..        +.+|++|++++|.++.     
T Consensus        81 ~~l~~L~L~~n~l~~lp~~-----l~~l~~L~~L~L~~n~l~-~lp~~~~~--------l~~L~~L~Ls~n~l~~-----  141 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQ-----AFRLSHLQHMTIDAAGLM-ELPDTMQQ--------FAGLETLTLARNPLRA-----  141 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSC-----GGGGTTCSEEEEESSCCC-CCCSCGGG--------GTTCSEEEEESCCCCC-----
T ss_pred             cceeEEEccCCCchhcChh-----hhhCCCCCEEECCCCCcc-chhHHHhc--------cCCCCEEECCCCcccc-----
Confidence            5667777777665422111     234566777777777666 33333322        4667777777776664     


Q ss_pred             hHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHH----HHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCC
Q 012930          268 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS----SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL  343 (453)
Q Consensus       268 i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~----~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~  343 (453)
                          ++..+..+++|++|++++|++.+..+..+..    .-+..+++|++|++++|.++.         +|..++   .+
T Consensus       142 ----lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------lp~~l~---~l  205 (328)
T 4fcg_A          142 ----LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS---------LPASIA---NL  205 (328)
T ss_dssp             ----CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC---------CCGGGG---GC
T ss_pred             ----CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc---------chHhhc---CC
Confidence                3445666677777777776555444432210    000125667777777776663         334444   45


Q ss_pred             CcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHH
Q 012930          344 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ  423 (453)
Q Consensus       344 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~  423 (453)
                      ++|++|++++|.++.     ++..+..+++|+.|++++|.+.+.     +|   ..+..+++|++|++++|.+...    
T Consensus       206 ~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~-----~p---~~~~~l~~L~~L~L~~n~~~~~----  268 (328)
T 4fcg_A          206 QNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRN-----YP---PIFGGRAPLKRLILKDCSNLLT----  268 (328)
T ss_dssp             TTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB-----CC---CCTTCCCCCCEEECTTCTTCCB----
T ss_pred             CCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhh-----hH---HHhcCCCCCCEEECCCCCchhh----
Confidence            667777777777664     455566677777777777665543     34   4456666777777777665543    


Q ss_pred             HHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930          424 LLDTLSTLRRPPTSLSIADNNLGRFCAN  451 (453)
Q Consensus       424 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  451 (453)
                      ++..+..+ ++|++|+|++|++.+.+|.
T Consensus       269 ~p~~~~~l-~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          269 LPLDIHRL-TQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             CCTTGGGC-TTCCEEECTTCTTCCCCCG
T ss_pred             cchhhhcC-CCCCEEeCCCCCchhhccH
Confidence            44455553 4477777777766666553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.80  E-value=2.2e-21  Score=184.97  Aligned_cols=234  Identities=19%  Similarity=0.196  Sum_probs=174.5

Q ss_pred             cccceeccccccchHHHhh-hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcc
Q 012930          165 HYARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  243 (453)
Q Consensus       165 ~~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~  243 (453)
                      ..++.++++++....++.. +..+++|++|++++|.+.....  .......+++|++|++++|.++... ..+.      
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~L~~L~Ls~n~i~~l~-~~~~------   98 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITMS-SNFL------   98 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE--EEHHHHSCSCCCEEECCSCSEEEEE-EEEE------
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC--cccccccccccCEEECCCCccccCh-hhcC------
Confidence            3688888988888777665 4677999999999998653210  0011236789999999999887421 1111      


Q ss_pred             ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930          244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  323 (453)
Q Consensus       244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  323 (453)
                        .+++|++|++++|.++....       ...+..+++|++|++++|.+.+..+..+     ..+++|++|++++|.+++
T Consensus        99 --~l~~L~~L~l~~n~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           99 --GLEQLEHLDFQHSNLKQMSE-------FSVFLSLRNLIYLDISHTHTRVAFNGIF-----NGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             --TCTTCCEEECTTSEEESSTT-------TTTTTTCTTCCEEECTTSCCEECSTTTT-----TTCTTCCEEECTTCEEGG
T ss_pred             --CCCCCCEEECCCCccccccc-------chhhhhccCCCEEECCCCcCCccchhhc-----ccCcCCCEEECCCCcccc
Confidence              15889999999999877221       1457788999999999999876544333     457899999999999875


Q ss_pred             -cccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCC
Q 012930          324 -WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER  402 (453)
Q Consensus       324 -~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~  402 (453)
                       ..+        ..+   ..+++|++|++++|.+++    ..+..+..+++|+.|++++|.+++      ++.  ..+..
T Consensus       165 ~~~~--------~~~---~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~  221 (306)
T 2z66_A          165 NFLP--------DIF---TELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNNFFS------LDT--FPYKC  221 (306)
T ss_dssp             GEEC--------SCC---TTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCSB------CCS--GGGTT
T ss_pred             ccch--------hHH---hhCcCCCEEECCCCCcCC----cCHHHhcCCCCCCEEECCCCccCc------cCh--hhccC
Confidence             222        333   367899999999999997    346678889999999999999987      332  34677


Q ss_pred             CCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930          403 CNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       403 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  448 (453)
                      +++|++|++++|+++..    .+..+..+.++|++|++++|.++..
T Consensus       222 l~~L~~L~L~~N~l~~~----~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          222 LNSLQVLDYSLNHIMTS----KKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CTTCCEEECTTSCCCBC----SSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             cccCCEeECCCCCCccc----CHHHHHhhhccCCEEEccCCCeecc
Confidence            89999999999999875    3445555445799999999998654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=3.1e-19  Score=172.23  Aligned_cols=211  Identities=20%  Similarity=0.245  Sum_probs=164.6

Q ss_pred             CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchh
Q 012930          188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  267 (453)
Q Consensus       188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~  267 (453)
                      .+++.|++++|.+......     ...+++|++|++++|.+++.....+...       +++|++|++++|.+++     
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~~~~~~~~~-------~~~L~~L~L~~~~l~~-----  132 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTLHGILSQ-------CSKLQNLSLEGLRLSD-----  132 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHHHHHHTT-------BCCCSEEECTTCBCCH-----
T ss_pred             ccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHHHHHHHHhh-------CCCCCEEeCcCcccCH-----
Confidence            7899999999986544332     2367899999999999987744444332       6899999999999887     


Q ss_pred             hHHHHHHhhcCCCCccEEEcCCC-CCChhHHHHHHHHHhhCCCCCCEEEcCCC-CCCCcccccCcCchHHhhcCCCCCC-
Q 012930          268 VVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQ-  344 (453)
Q Consensus       268 i~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~l~~~~~~~-  344 (453)
                         ..+..+..+++|++|++++| .+++.....+.    ..+++|++|++++| .+++..       ++..+.   .++ 
T Consensus       133 ---~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~----~~~~~L~~L~l~~~~~l~~~~-------~~~~~~---~l~~  195 (336)
T 2ast_B          133 ---PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL----SSCSRLDELNLSWCFDFTEKH-------VQVAVA---HVSE  195 (336)
T ss_dssp             ---HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH----HHCTTCCEEECCCCTTCCHHH-------HHHHHH---HSCT
T ss_pred             ---HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH----hcCCCCCEEcCCCCCCcChHH-------HHHHHH---hccc
Confidence               67888889999999999999 78876554433    33799999999999 888531       234455   567 


Q ss_pred             cccEEEecCC--CCChhhHHHHHHHHhCCCCccEEeCCCCC-CChhHHHhHHHHHHhhcCCCCCccEEEccCC-CCChhh
Q 012930          345 SLRLLNLRGN--NLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERCNPLVELYLENC-ELSGRG  420 (453)
Q Consensus       345 ~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n-~l~~~~  420 (453)
                      +|++|++++|  .+++.   .++..+..+++|+.|++++|. +++.+..        .+..+++|++|++++| .+++.+
T Consensus       196 ~L~~L~l~~~~~~~~~~---~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--------~l~~l~~L~~L~l~~~~~~~~~~  264 (336)
T 2ast_B          196 TITQLNLSGYRKNLQKS---DLSTLVRRCPNLVHLDLSDSVMLKNDCFQ--------EFFQLNYLQHLSLSRCYDIIPET  264 (336)
T ss_dssp             TCCEEECCSCGGGSCHH---HHHHHHHHCTTCSEEECTTCTTCCGGGGG--------GGGGCTTCCEEECTTCTTCCGGG
T ss_pred             CCCEEEeCCCcccCCHH---HHHHHHhhCCCCCEEeCCCCCcCCHHHHH--------HHhCCCCCCEeeCCCCCCCCHHH
Confidence            9999999999  67764   467778889999999999999 7876433        3455699999999999 577764


Q ss_pred             HHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930          421 VSQLLDTLSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       421 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                      .    ..+.. .++|++|++++| +++++
T Consensus       265 ~----~~l~~-~~~L~~L~l~~~-i~~~~  287 (336)
T 2ast_B          265 L----LELGE-IPTLKTLQVFGI-VPDGT  287 (336)
T ss_dssp             G----GGGGG-CTTCCEEECTTS-SCTTC
T ss_pred             H----HHHhc-CCCCCEEeccCc-cCHHH
Confidence            3    34555 456999999999 87754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.80  E-value=4.2e-19  Score=172.13  Aligned_cols=218  Identities=20%  Similarity=0.248  Sum_probs=114.9

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.++++++....++. +..+++|+.|++++|........     +..+++|++|++++|.+.....  +..       
T Consensus       111 ~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~--~~~-------  175 (347)
T 4fmz_A          111 NLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKDVTP--IAN-------  175 (347)
T ss_dssp             TCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-----GTTCTTCCEEECCSSCCCCCGG--GGG-------
T ss_pred             cCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-----hhhCCCCcEEEecCCCcCCchh--hcc-------
Confidence            35555555555444333 44455555555555532111111     3355556666666665554332  111       


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                       +++|++|++++|.+..         +.. +..+++|+.|++++|.+.+..+       +..+++|++|++++|.+++. 
T Consensus       176 -l~~L~~L~l~~n~l~~---------~~~-~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~l~~n~l~~~-  236 (347)
T 4fmz_A          176 -LTDLYSLSLNYNQIED---------ISP-LASLTSLHYFTAYVNQITDITP-------VANMTRLNSLKIGNNKITDL-  236 (347)
T ss_dssp             -CTTCSEEECTTSCCCC---------CGG-GGGCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCC-
T ss_pred             -CCCCCEEEccCCcccc---------ccc-ccCCCccceeecccCCCCCCch-------hhcCCcCCEEEccCCccCCC-
Confidence             3556666666666554         111 4455566666666665554222       12356666666666666541 


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  405 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~  405 (453)
                              +. +.   .+++|++|++++|.+++     + ..+..+++|+.|++++|.+++      ++    .+..+++
T Consensus       237 --------~~-~~---~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~------~~----~~~~l~~  288 (347)
T 4fmz_A          237 --------SP-LA---NLSQLTWLEIGTNQISD-----I-NAVKDLTKLKMLNVGSNQISD------IS----VLNNLSQ  288 (347)
T ss_dssp             --------GG-GT---TCTTCCEEECCSSCCCC-----C-GGGTTCTTCCEEECCSSCCCC------CG----GGGGCTT
T ss_pred             --------cc-hh---cCCCCCEEECCCCccCC-----C-hhHhcCCCcCEEEccCCccCC------Ch----hhcCCCC
Confidence                    11 22   45666666666666665     2 235566666666666666665      22    2344566


Q ss_pred             ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      |++|++++|+++..    .+..+..+ ++|++|++++|.+++..+
T Consensus       289 L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          289 LNSLFLNNNQLGNE----DMEVIGGL-TNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CSEEECCSSCCCGG----GHHHHHTC-TTCSEEECCSSSCCCCGG
T ss_pred             CCEEECcCCcCCCc----ChhHhhcc-ccCCEEEccCCccccccC
Confidence            66666666666654    23444442 346666666666665443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.80  E-value=7.9e-21  Score=187.43  Aligned_cols=233  Identities=18%  Similarity=0.082  Sum_probs=147.6

Q ss_pred             ccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      .++.++++++....++. .+..+++|++|++++|.+......    .+..+++|++|++++|.++......+..      
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~------  139 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHN------  139 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTT------
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcC------
Confidence            67888888887766543 566778899999998886544322    2467788999999999887543333222      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                        +++|++|++++|.+..        ..+..+..+++|++|++++|.+++...        ..+++|+.|++++|.+++.
T Consensus       140 --l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          140 --TPKLTTLSMSNNNLER--------IEDDTFQATTSLQNLQLSSNRLTHVDL--------SLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             --CTTCCEEECCSSCCCB--------CCTTTTSSCTTCCEEECCSSCCSBCCG--------GGCTTCSEEECCSSCCSEE
T ss_pred             --CCCCcEEECCCCccCc--------cChhhccCCCCCCEEECCCCcCCcccc--------ccccccceeeccccccccc
Confidence              5788999999998876        334557788899999999998876422        1234555544444443321


Q ss_pred             cccc----------------------------CcCch--HHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCc
Q 012930          325 LSKY----------------------------DRSGP--LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL  374 (453)
Q Consensus       325 ~~~~----------------------------~~~~l--~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  374 (453)
                      ....                            ....+  ...+.   .+++|++|++++|.+++    ..+..+..+++|
T Consensus       202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~---~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L  274 (390)
T 3o6n_A          202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL---NYPGLVEVDLSYNELEK----IMYHPFVKMQRL  274 (390)
T ss_dssp             ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGG---GCTTCSEEECCSSCCCE----EESGGGTTCSSC
T ss_pred             CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHc---CCCCccEEECCCCcCCC----cChhHccccccC
Confidence            0000                            00000  01222   45677777777777776    235566677777


Q ss_pred             cEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930          375 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       375 ~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  448 (453)
                      +.|++++|.+++      +|   .....+++|++|++++|+++..     +..+..+ ++|++|++++|.|++.
T Consensus       275 ~~L~L~~n~l~~------~~---~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~l-~~L~~L~L~~N~i~~~  333 (390)
T 3o6n_A          275 ERLYISNNRLVA------LN---LYGQPIPTLKVLDLSHNHLLHV-----ERNQPQF-DRLENLYLDHNSIVTL  333 (390)
T ss_dssp             CEEECCSSCCCE------EE---CSSSCCTTCCEEECCSSCCCCC-----GGGHHHH-TTCSEEECCSSCCCCC
T ss_pred             CEEECCCCcCcc------cC---cccCCCCCCCEEECCCCcceec-----Ccccccc-CcCCEEECCCCcccee
Confidence            777777777765      33   3345567788888888877652     3333332 3377778777777653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.80  E-value=1.4e-18  Score=180.62  Aligned_cols=113  Identities=15%  Similarity=0.124  Sum_probs=68.6

Q ss_pred             ccceeccccccchH-HHhhhh-cCCCccEEEecccc-ChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhc
Q 012930          166 YARCLRLQNALCVE-ETCQLL-RESKLQSLVLRWIR-FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS  242 (453)
Q Consensus       166 ~l~~l~L~~~~~~~-~~~~l~-~~~~L~~L~Ls~~~-~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~  242 (453)
                      .++.++++++.... .+..+. .+++|++|+|++|. +...   ....+..++++|++|+|++|.+++.++..+..... 
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~-  181 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD---GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD-  181 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH---HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT-
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH---HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh-
Confidence            46666666655443 223333 56888888888874 3322   12333557788888888888776655444432211 


Q ss_pred             cccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCC
Q 012930          243 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC  290 (453)
Q Consensus       243 ~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n  290 (453)
                         .+++|++|++++|. .....    ..+...+..+++|++|++++|
T Consensus       182 ---~~~~L~~L~l~~~~-~~~~~----~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          182 ---TYTSLVSLNISCLA-SEVSF----SALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             ---TCCCCCEEECTTCC-SCCCH----HHHHHHHHHCTTCCEEECCTT
T ss_pred             ---cCCcCcEEEecccC-CcCCH----HHHHHHHHhCCCCcEEecCCC
Confidence               15678888888876 22111    145555566888888888887

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.80  E-value=6.2e-21  Score=191.32  Aligned_cols=228  Identities=17%  Similarity=0.105  Sum_probs=170.9

Q ss_pred             cccceeccccccchHHH-hhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcc
Q 012930          165 HYARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  243 (453)
Q Consensus       165 ~~l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~  243 (453)
                      ..++.++++++.+..++ ..+.++++|++|+|++|.+......    .+.++++|++|+|++|.++......+..     
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----  134 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG----AFNGLANLNTLELFDNRLTTIPNGAFVY-----  134 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG----GGTTCSSCCEEECCSSCCSSCCTTTSCS-----
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh----hccCCccCCEEECCCCcCCeeCHhHhhc-----
Confidence            35788888888777654 4566789999999999986544322    2567899999999999888654444332     


Q ss_pred             ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930          244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  323 (453)
Q Consensus       244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  323 (453)
                         +.+|++|++++|.+..        .....+..+++|++|+|++|+.....+...    +..+++|++|++++|.+++
T Consensus       135 ---l~~L~~L~L~~N~i~~--------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~----~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          135 ---LSKLKELWLRNNPIES--------IPSYAFNRIPSLRRLDLGELKRLSYISEGA----FEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             ---CSSCCEEECCSCCCCE--------ECTTTTTTCTTCCEEECCCCTTCCEECTTT----TTTCSSCCEEECTTSCCSS
T ss_pred             ---cccCceeeCCCCcccc--------cCHHHhhhCcccCEeCCCCCCCcceeCcch----hhcccccCeecCCCCcCcc
Confidence               5889999999999886        334467788999999999864333233221    3457899999999999885


Q ss_pred             cccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCC
Q 012930          324 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC  403 (453)
Q Consensus       324 ~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~  403 (453)
                               +    ..+..+++|++|+|++|+++.    ..+..+..+++|+.|+|++|.|++.     .+   .++..+
T Consensus       200 ---------~----~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~-----~~---~~~~~l  254 (440)
T 3zyj_A          200 ---------I----PNLTPLIKLDELDLSGNHLSA----IRPGSFQGLMHLQKLWMIQSQIQVI-----ER---NAFDNL  254 (440)
T ss_dssp             ---------C----CCCTTCSSCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEE-----CT---TSSTTC
T ss_pred             ---------c----cccCCCcccCEEECCCCccCc----cChhhhccCccCCEEECCCCceeEE-----Ch---hhhcCC
Confidence                     2    223467899999999999987    3466788999999999999999872     22   557788


Q ss_pred             CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930          404 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  446 (453)
Q Consensus       404 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  446 (453)
                      ++|++|+|++|+|+..    ....+.. .++|+.|+|++|.+.
T Consensus       255 ~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          255 QSLVEINLAHNNLTLL----PHDLFTP-LHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTCCEEECTTSCCCCC----CTTTTSS-CTTCCEEECCSSCEE
T ss_pred             CCCCEEECCCCCCCcc----ChhHhcc-ccCCCEEEcCCCCcc
Confidence            9999999999999874    2333455 356999999999863

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.79  E-value=2.5e-20  Score=179.57  Aligned_cols=224  Identities=19%  Similarity=0.155  Sum_probs=137.3

Q ss_pred             ccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      .++.++++++....++. .+..+++|++|++++|.+......    .+..+++|++|++++|.++.... .+        
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~l~~-~~--------  119 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG----AFAPLVKLERLYLSKNQLKELPE-KM--------  119 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCSBCCS-SC--------
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH----HhcCCCCCCEEECCCCcCCccCh-hh--------
Confidence            46666777666655444 455667777777777775433221    14566777777777777663211 11        


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChh--HHHHHHHHHhhCCCCCCEEEcCCCCCC
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD--FGRMVFSSLLEASSSLSILDLSGNSIG  322 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~~L~~~~~~L~~L~Ls~n~l~  322 (453)
                        ..+|++|++++|.++.        ..+..+.++++|++|++++|.+...  .+..     +..+++|++|++++|.++
T Consensus       120 --~~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          120 --PKTLQELRVHENEITK--------VRKSVFNGLNQMIVVELGTNPLKSSGIENGA-----FQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             --CTTCCEEECCSSCCCB--------BCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-----GGGCTTCCEEECCSSCCC
T ss_pred             --cccccEEECCCCcccc--------cCHhHhcCCccccEEECCCCcCCccCcChhh-----ccCCCCcCEEECCCCccc
Confidence              2567777777777765        3344566777777777777776531  1111     234577777777777776


Q ss_pred             CcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCC
Q 012930          323 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER  402 (453)
Q Consensus       323 ~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~  402 (453)
                      +         +|..+     .++|++|++++|.+++    ..+..+..+++|+.|++++|.+++.      +.  ..+..
T Consensus       185 ~---------l~~~~-----~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~------~~--~~~~~  238 (330)
T 1xku_A          185 T---------IPQGL-----PPSLTELHLDGNKITK----VDAASLKGLNNLAKLGLSFNSISAV------DN--GSLAN  238 (330)
T ss_dssp             S---------CCSSC-----CTTCSEEECTTSCCCE----ECTGGGTTCTTCCEEECCSSCCCEE------CT--TTGGG
T ss_pred             c---------CCccc-----cccCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCcee------Ch--hhccC
Confidence            4         11211     1567777777777776    2345566777777777777777652      21  23455


Q ss_pred             CCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930          403 CNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       403 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                      +++|++|++++|+++.     ++..+.. .++|++|++++|.|++-.
T Consensus       239 l~~L~~L~L~~N~l~~-----lp~~l~~-l~~L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          239 TPHLRELHLNNNKLVK-----VPGGLAD-HKYIQVVYLHNNNISAIG  279 (330)
T ss_dssp             STTCCEEECCSSCCSS-----CCTTTTT-CSSCCEEECCSSCCCCCC
T ss_pred             CCCCCEEECCCCcCcc-----CChhhcc-CCCcCEEECCCCcCCccC
Confidence            5777777777777765     4555555 345777777777776543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.79  E-value=1e-20  Score=190.45  Aligned_cols=228  Identities=18%  Similarity=0.096  Sum_probs=173.0

Q ss_pred             cccceeccccccchHH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcc
Q 012930          165 HYARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  243 (453)
Q Consensus       165 ~~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~  243 (453)
                      ..++.|+++++.+..+ +..+.++++|+.|+|++|.+......    .+.++++|++|+|++|.++......+..     
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----  145 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG----AFNGLASLNTLELFDNWLTVIPSGAFEY-----  145 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSBCCTTTSSS-----
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh----hccCcccCCEEECCCCcCCccChhhhcc-----
Confidence            4688899998887765 44567789999999999987654322    2567899999999999988655444432     


Q ss_pred             ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930          244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  323 (453)
Q Consensus       244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  323 (453)
                         +++|++|++++|.+..        .....+..+++|++|++++|...+..+...    +..+++|+.|++++|.+++
T Consensus       146 ---l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~----~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          146 ---LSKLRELWLRNNPIES--------IPSYAFNRVPSLMRLDLGELKKLEYISEGA----FEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             ---CTTCCEEECCSCCCCE--------ECTTTTTTCTTCCEEECCCCTTCCEECTTT----TTTCTTCCEEECTTSCCSS
T ss_pred             ---cCCCCEEECCCCCcce--------eCHhHHhcCCcccEEeCCCCCCccccChhh----ccCCCCCCEEECCCCcccc
Confidence               5889999999999886        233467789999999999854333233221    3457899999999999985


Q ss_pred             cccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCC
Q 012930          324 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC  403 (453)
Q Consensus       324 ~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~  403 (453)
                      .             ..+..+++|++|+|++|.+++    ..+..+..+++|+.|++++|.++..     .+   ..+..+
T Consensus       211 ~-------------~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~-----~~---~~~~~l  265 (452)
T 3zyi_A          211 M-------------PNLTPLVGLEELEMSGNHFPE----IRPGSFHGLSSLKKLWVMNSQVSLI-----ER---NAFDGL  265 (452)
T ss_dssp             C-------------CCCTTCTTCCEEECTTSCCSE----ECGGGGTTCTTCCEEECTTSCCCEE-----CT---TTTTTC
T ss_pred             c-------------ccccccccccEEECcCCcCcc----cCcccccCccCCCEEEeCCCcCceE-----CH---HHhcCC
Confidence            2             223467899999999999987    3467888999999999999999872     23   557788


Q ss_pred             CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930          404 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  446 (453)
Q Consensus       404 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  446 (453)
                      ++|++|+|++|+|+..    ....+.. .++|+.|+|++|.+.
T Consensus       266 ~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          266 ASLVELNLAHNNLSSL----PHDLFTP-LRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTCCEEECCSSCCSCC----CTTSSTT-CTTCCEEECCSSCEE
T ss_pred             CCCCEEECCCCcCCcc----ChHHhcc-ccCCCEEEccCCCcC
Confidence            9999999999999874    2233444 356999999999864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=5.2e-21  Score=182.35  Aligned_cols=230  Identities=17%  Similarity=0.137  Sum_probs=173.2

Q ss_pred             cceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhH--HHHHHHHhhccc
Q 012930          167 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSKR  244 (453)
Q Consensus       167 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~--~~~l~~~L~~~~  244 (453)
                      .+.+++++.....++..+.  ++|++|++++|.+......    .+..+++|++|+|++|.++..+  +..+..      
T Consensus         9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~------   76 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFG------   76 (306)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCEEEEEEHHHHS------
T ss_pred             CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHh----HhhccccCCEEECCCCccCcccCccccccc------
Confidence            3455566665555554332  6899999999997643222    2568899999999999998543  333332      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHH-HHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG-RMVFSSLLEASSSLSILDLSGNSIGG  323 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~~L~~~~~~L~~L~Ls~n~l~~  323 (453)
                        +.+|++|++++|.+..         ++..+..+++|++|++++|.+.+... ..     +..+++|++|++++|.+++
T Consensus        77 --~~~L~~L~Ls~n~i~~---------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~~l~~L~~L~l~~n~l~~  140 (306)
T 2z66_A           77 --TTSLKYLDLSFNGVIT---------MSSNFLGLEQLEHLDFQHSNLKQMSEFSV-----FLSLRNLIYLDISHTHTRV  140 (306)
T ss_dssp             --CSCCCEEECCSCSEEE---------EEEEEETCTTCCEEECTTSEEESSTTTTT-----TTTCTTCCEEECTTSCCEE
T ss_pred             --ccccCEEECCCCcccc---------ChhhcCCCCCCCEEECCCCcccccccchh-----hhhccCCCEEECCCCcCCc
Confidence              5889999999999875         45567889999999999998876332 12     2457899999999999886


Q ss_pred             cccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCC
Q 012930          324 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC  403 (453)
Q Consensus       324 ~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~  403 (453)
                      ..+        ..+.   .+++|++|++++|.+++.   .++..+..+++|+.|++++|.+++.     .|   ..+..+
T Consensus       141 ~~~--------~~~~---~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~---~~~~~l  198 (306)
T 2z66_A          141 AFN--------GIFN---GLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQL-----SP---TAFNSL  198 (306)
T ss_dssp             CST--------TTTT---TCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE-----CT---TTTTTC
T ss_pred             cch--------hhcc---cCcCCCEEECCCCccccc---cchhHHhhCcCCCEEECCCCCcCCc-----CH---HHhcCC
Confidence            433        3344   678999999999998752   2466788899999999999999872     23   557788


Q ss_pred             CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930          404 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN  451 (453)
Q Consensus       404 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  451 (453)
                      ++|++|++++|.++...    ...+.. .++|++|++++|.|++..+.
T Consensus       199 ~~L~~L~L~~N~l~~~~----~~~~~~-l~~L~~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          199 SSLQVLNMSHNNFFSLD----TFPYKC-LNSLQVLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             TTCCEEECTTSCCSBCC----SGGGTT-CTTCCEEECTTSCCCBCSSS
T ss_pred             CCCCEEECCCCccCccC----hhhccC-cccCCEeECCCCCCcccCHH
Confidence            99999999999998742    223455 35699999999999886653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.79  E-value=7.6e-19  Score=170.27  Aligned_cols=229  Identities=17%  Similarity=0.214  Sum_probs=177.3

Q ss_pred             cCCceeeeehhhhc--------cccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEE
Q 012930          151 CDYSKLSYHCQQFG--------HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLE  222 (453)
Q Consensus       151 ~~l~~l~l~~~~~~--------~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~  222 (453)
                      .+++.+.++.+.+.        ..++.+++.++........+..+++|++|++++|.+.....      +..+++|++|+
T Consensus       110 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~~l~~L~~L~  183 (347)
T 4fmz_A          110 TNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP------IANLTDLYSLS  183 (347)
T ss_dssp             TTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG------GGGCTTCSEEE
T ss_pred             CcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh------hccCCCCCEEE
Confidence            67777777665221        15788999988554445557888999999999998654432      56889999999


Q ss_pred             cCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHH
Q 012930          223 FLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS  302 (453)
Q Consensus       223 L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~  302 (453)
                      +++|.+.+...  +..        +.+|+.|++++|.++..        .+  +..+++|++|++++|.+.+..+     
T Consensus       184 l~~n~l~~~~~--~~~--------l~~L~~L~l~~n~l~~~--------~~--~~~~~~L~~L~l~~n~l~~~~~-----  238 (347)
T 4fmz_A          184 LNYNQIEDISP--LAS--------LTSLHYFTAYVNQITDI--------TP--VANMTRLNSLKIGNNKITDLSP-----  238 (347)
T ss_dssp             CTTSCCCCCGG--GGG--------CTTCCEEECCSSCCCCC--------GG--GGGCTTCCEEECCSSCCCCCGG-----
T ss_pred             ccCCccccccc--ccC--------CCccceeecccCCCCCC--------ch--hhcCCcCCEEEccCCccCCCcc-----
Confidence            99999886543  221        58899999999999872        11  6789999999999999987433     


Q ss_pred             HHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCC
Q 012930          303 SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN  382 (453)
Q Consensus       303 ~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N  382 (453)
                        +..+++|++|++++|.+++.          ..+.   .+++|++|++++|.+++     + ..+..+++|+.|++++|
T Consensus       239 --~~~l~~L~~L~l~~n~l~~~----------~~~~---~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          239 --LANLSQLTWLEIGTNQISDI----------NAVK---DLTKLKMLNVGSNQISD-----I-SVLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             --GTTCTTCCEEECCSSCCCCC----------GGGT---TCTTCCEEECCSSCCCC-----C-GGGGGCTTCSEEECCSS
T ss_pred             --hhcCCCCCEEECCCCccCCC----------hhHh---cCCCcCEEEccCCccCC-----C-hhhcCCCCCCEEECcCC
Confidence              24579999999999999862          2334   67899999999999997     3 35788999999999999


Q ss_pred             CCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930          383 TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  446 (453)
Q Consensus       383 ~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  446 (453)
                      .+++.+     +   ..+..+++|++|++++|+++..     .. +..+ +.|++|++++|.|+
T Consensus       298 ~l~~~~-----~---~~l~~l~~L~~L~L~~n~l~~~-----~~-~~~l-~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          298 QLGNED-----M---EVIGGLTNLTTLFLSQNHITDI-----RP-LASL-SKMDSADFANQVIK  346 (347)
T ss_dssp             CCCGGG-----H---HHHHTCTTCSEEECCSSSCCCC-----GG-GGGC-TTCSEESSSCC---
T ss_pred             cCCCcC-----h---hHhhccccCCEEEccCCccccc-----cC-hhhh-hccceeehhhhccc
Confidence            998753     2   3356679999999999999885     22 5563 55999999999986

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=2.2e-20  Score=194.56  Aligned_cols=233  Identities=18%  Similarity=0.087  Sum_probs=155.2

Q ss_pred             ccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      .++.|+++++.+..++. .+..+++|+.|+|++|.+......    .+.++++|++|+|++|.++...+..+..      
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~------  145 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHN------  145 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTT------
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhcc------
Confidence            68888888887776554 667778999999999986554332    2567889999999999888544433332      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                        +++|++|++++|.++.        ..+..+..+++|++|+|++|.+.+..+.        .+++|+.|++++|.+++.
T Consensus       146 --l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          146 --TPKLTTLSMSNNNLER--------IEDDTFQATTSLQNLQLSSNRLTHVDLS--------LIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             --CTTCCEEECCSSCCCB--------CCTTTTTTCTTCCEEECTTSCCSBCCGG--------GCTTCSEEECCSSCCSEE
T ss_pred             --CCCCCEEEeeCCcCCC--------CChhhhhcCCcCcEEECcCCCCCCcChh--------hhhhhhhhhcccCccccc
Confidence              5889999999998887        3445677889999999999988764221        234555544444443321


Q ss_pred             cccc----------------------------CcCch--HHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCc
Q 012930          325 LSKY----------------------------DRSGP--LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL  374 (453)
Q Consensus       325 ~~~~----------------------------~~~~l--~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  374 (453)
                      ....                            ....+  +..+.   .+++|++|+|++|.+++    ..|..+..+++|
T Consensus       208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L  280 (597)
T 3oja_B          208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL---NYPGLVEVDLSYNELEK----IMYHPFVKMQRL  280 (597)
T ss_dssp             ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGG---GCTTCSEEECCSSCCCE----EESGGGTTCSSC
T ss_pred             cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhc---cCCCCCEEECCCCccCC----CCHHHhcCccCC
Confidence            0000                            00000  01223   56778888888888876    345667778888


Q ss_pred             cEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930          375 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       375 ~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  448 (453)
                      +.|+|++|.++.      +|   .....+++|+.|+|++|.++.     ++..+..+ ++|++|+|++|.|++.
T Consensus       281 ~~L~Ls~N~l~~------l~---~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~l-~~L~~L~L~~N~l~~~  339 (597)
T 3oja_B          281 ERLYISNNRLVA------LN---LYGQPIPTLKVLDLSHNHLLH-----VERNQPQF-DRLENLYLDHNSIVTL  339 (597)
T ss_dssp             CEEECTTSCCCE------EE---CSSSCCTTCCEEECCSSCCCC-----CGGGHHHH-TTCSEEECCSSCCCCC
T ss_pred             CEEECCCCCCCC------CC---cccccCCCCcEEECCCCCCCc-----cCcccccC-CCCCEEECCCCCCCCc
Confidence            888888888876      44   335566788888888888875     33334442 3488888888887653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.79  E-value=8.5e-21  Score=187.24  Aligned_cols=245  Identities=21%  Similarity=0.206  Sum_probs=175.7

Q ss_pred             cCCceeeeehhh--------hcc--ccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCcc
Q 012930          151 CDYSKLSYHCQQ--------FGH--YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLA  219 (453)
Q Consensus       151 ~~l~~l~l~~~~--------~~~--~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~  219 (453)
                      .+++.+.++.+.        +..  .++.|+++++....++. .+..+++|++|++++|.+......    .+..+++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~  144 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLT  144 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCC
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHH----HhcCCCCCc
Confidence            567777766542        222  68999999998877654 457789999999999997643322    256789999


Q ss_pred             EEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHH---------hh--------------
Q 012930          220 SLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS---------FL--------------  276 (453)
Q Consensus       220 ~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~---------~l--------------  276 (453)
                      +|++++|.++...+..+..        +++|++|++++|.++......++. +..         .+              
T Consensus       145 ~L~L~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~L~~L~l~~n  215 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQA--------TTSLQNLQLSSNRLTHVDLSLIPS-LFHANVSYNLLSTLAIPIAVEELDASHN  215 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSS--------CTTCCEEECCSSCCSBCCGGGCTT-CSEEECCSSCCSEEECCSSCSEEECCSS
T ss_pred             EEECCCCccCccChhhccC--------CCCCCEEECCCCcCCccccccccc-cceeecccccccccCCCCcceEEECCCC
Confidence            9999999998765554433        589999999999998754331110 000         00              


Q ss_pred             -------cCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEE
Q 012930          277 -------SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL  349 (453)
Q Consensus       277 -------~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L  349 (453)
                             ...++|+.|++++|.+.+.  ..     +..+++|++|++++|.+++..+        ..+.   .+++|++|
T Consensus       216 ~l~~~~~~~~~~L~~L~l~~n~l~~~--~~-----l~~l~~L~~L~Ls~n~l~~~~~--------~~~~---~l~~L~~L  277 (390)
T 3o6n_A          216 SINVVRGPVNVELTILKLQHNNLTDT--AW-----LLNYPGLVEVDLSYNELEKIMY--------HPFV---KMQRLERL  277 (390)
T ss_dssp             CCCEEECCCCSSCCEEECCSSCCCCC--GG-----GGGCTTCSEEECCSSCCCEEES--------GGGT---TCSSCCEE
T ss_pred             eeeeccccccccccEEECCCCCCccc--HH-----HcCCCCccEEECCCCcCCCcCh--------hHcc---ccccCCEE
Confidence                   0113566666666666652  11     2446889999999998886544        4555   67899999


Q ss_pred             EecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHh
Q 012930          350 NLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLS  429 (453)
Q Consensus       350 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  429 (453)
                      ++++|+++.     ++..+..+++|+.|++++|+++.      +|   ..+..+++|++|++++|+|+...       +.
T Consensus       278 ~L~~n~l~~-----~~~~~~~l~~L~~L~L~~n~l~~------~~---~~~~~l~~L~~L~L~~N~i~~~~-------~~  336 (390)
T 3o6n_A          278 YISNNRLVA-----LNLYGQPIPTLKVLDLSHNHLLH------VE---RNQPQFDRLENLYLDHNSIVTLK-------LS  336 (390)
T ss_dssp             ECCSSCCCE-----EECSSSCCTTCCEEECCSSCCCC------CG---GGHHHHTTCSEEECCSSCCCCCC-------CC
T ss_pred             ECCCCcCcc-----cCcccCCCCCCCEEECCCCccee------cC---ccccccCcCCEEECCCCccceeC-------ch
Confidence            999999986     55556778999999999999986      44   22344589999999999998842       44


Q ss_pred             cCCCCCcEEECcCCCCCcc
Q 012930          430 TLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       430 ~~~~~L~~L~Ls~N~l~~~  448 (453)
                      . .++|+.|++++|+++..
T Consensus       337 ~-~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          337 T-HHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             T-TCCCSEEECCSSCEEHH
T ss_pred             h-hccCCEEEcCCCCccch
Confidence            4 35699999999998754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.79  E-value=1.4e-21  Score=186.92  Aligned_cols=209  Identities=17%  Similarity=0.226  Sum_probs=168.4

Q ss_pred             CCccEEEeccccChH--HHHHHHHHHHhcCCCccEEEcCC-CCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCC
Q 012930          188 SKLQSLVLRWIRFEE--HVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC  264 (453)
Q Consensus       188 ~~L~~L~Ls~~~~~~--~~~~~~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~  264 (453)
                      .++++|+|++|.+..  ....    .+..+++|++|++++ |.+.+..+..+..        +++|++|++++|.++.  
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~----~l~~l~~L~~L~L~~~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~~--  115 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPS----SLANLPYLNFLYIGGINNLVGPIPPAIAK--------LTQLHYLYITHTNVSG--  115 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG----GGGGCTTCSEEEEEEETTEESCCCGGGGG--------CTTCSEEEEEEECCEE--
T ss_pred             ceEEEEECCCCCccCCcccCh----hHhCCCCCCeeeCCCCCcccccCChhHhc--------CCCCCEEECcCCeeCC--
Confidence            579999999999764  3222    256889999999995 8887766666544        6899999999999986  


Q ss_pred             chhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCC
Q 012930          265 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ  344 (453)
Q Consensus       265 ~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~  344 (453)
                            .++..+..+++|++|+|++|.+.+..+..+     ..+++|++|++++|.+++..+        ..+.   .+.
T Consensus       116 ------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p--------~~l~---~l~  173 (313)
T 1ogq_A          116 ------AIPDFLSQIKTLVTLDFSYNALSGTLPPSI-----SSLPNLVGITFDGNRISGAIP--------DSYG---SFS  173 (313)
T ss_dssp             ------ECCGGGGGCTTCCEEECCSSEEESCCCGGG-----GGCTTCCEEECCSSCCEEECC--------GGGG---CCC
T ss_pred             ------cCCHHHhCCCCCCEEeCCCCccCCcCChHH-----hcCCCCCeEECcCCcccCcCC--------HHHh---hhh
Confidence                  466778899999999999999887666554     447999999999999986554        6666   455


Q ss_pred             -cccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHH
Q 012930          345 -SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ  423 (453)
Q Consensus       345 -~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~  423 (453)
                       +|++|++++|+++.    .+|..+..++ |+.|++++|.+++.     .|   ..+..+++|++|+|++|.++..    
T Consensus       174 ~~L~~L~L~~N~l~~----~~~~~~~~l~-L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~~L~L~~N~l~~~----  236 (313)
T 1ogq_A          174 KLFTSMTISRNRLTG----KIPPTFANLN-LAFVDLSRNMLEGD-----AS---VLFGSDKNTQKIHLAKNSLAFD----  236 (313)
T ss_dssp             TTCCEEECCSSEEEE----ECCGGGGGCC-CSEEECCSSEEEEC-----CG---GGCCTTSCCSEEECCSSEECCB----
T ss_pred             hcCcEEECcCCeeec----cCChHHhCCc-ccEEECcCCcccCc-----CC---HHHhcCCCCCEEECCCCceeee----
Confidence             89999999999986    3677777777 99999999999763     44   5678889999999999999863    


Q ss_pred             HHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930          424 LLDTLSTLRRPPTSLSIADNNLGRFCAN  451 (453)
Q Consensus       424 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  451 (453)
                       ...+.. .++|++|++++|.|++.+|.
T Consensus       237 -~~~~~~-l~~L~~L~Ls~N~l~~~~p~  262 (313)
T 1ogq_A          237 -LGKVGL-SKNLNGLDLRNNRIYGTLPQ  262 (313)
T ss_dssp             -GGGCCC-CTTCCEEECCSSCCEECCCG
T ss_pred             -cCcccc-cCCCCEEECcCCcccCcCCh
Confidence             222455 46699999999999877664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.79  E-value=1.5e-20  Score=197.12  Aligned_cols=136  Identities=14%  Similarity=0.078  Sum_probs=89.8

Q ss_pred             ccceeccccccchH------------------HHhhhh--cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCC
Q 012930          166 YARCLRLQNALCVE------------------ETCQLL--RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH  225 (453)
Q Consensus       166 ~l~~l~L~~~~~~~------------------~~~~l~--~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~  225 (453)
                      .++.|+++++.+..                  ++..+.  ++++|++|+|++|.+....+    ..+.++++|++|++++
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP----TFLKALPEMQLINVAC  282 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC----TTTTTCSSCCEEECTT
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh----HHHhcCCCCCEEECcC
Confidence            57777787777766                  677777  78888888888887544333    2245778888888888


Q ss_pred             CC-CCh-hHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHH--hhcCCCCccEEEcCCCCCChhHHHHHH
Q 012930          226 CK-LSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVF  301 (453)
Q Consensus       226 n~-l~~-~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~--~l~~~~~L~~L~L~~n~l~~~~~~~l~  301 (453)
                      |. +++ ..+..+...-...  .+++|++|++++|.++.         ++.  .+..+++|++|++++|.+.+..+ .+ 
T Consensus       283 n~~l~~~~lp~~~~~L~~~~--~l~~L~~L~L~~n~l~~---------ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~-  349 (636)
T 4eco_A          283 NRGISGEQLKDDWQALADAP--VGEKIQIIYIGYNNLKT---------FPVETSLQKMKKLGMLECLYNQLEGKLP-AF-  349 (636)
T ss_dssp             CTTSCHHHHHHHHHHHHHSG--GGGTCCEEECCSSCCSS---------CCCHHHHTTCTTCCEEECCSCCCEEECC-CC-
T ss_pred             CCCCccccchHHHHhhhccc--cCCCCCEEECCCCcCCc---------cCchhhhccCCCCCEEeCcCCcCccchh-hh-
Confidence            87 777 6666665420000  02678888888887774         444  56677788888888887775454 22 


Q ss_pred             HHHhhCCCCCCEEEcCCCCCC
Q 012930          302 SSLLEASSSLSILDLSGNSIG  322 (453)
Q Consensus       302 ~~L~~~~~~L~~L~Ls~n~l~  322 (453)
                          ..+++|++|++++|.++
T Consensus       350 ----~~l~~L~~L~L~~N~l~  366 (636)
T 4eco_A          350 ----GSEIKLASLNLAYNQIT  366 (636)
T ss_dssp             ----EEEEEESEEECCSSEEE
T ss_pred             ----CCCCCCCEEECCCCccc
Confidence                33456666666666655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.78  E-value=1.3e-20  Score=196.54  Aligned_cols=244  Identities=20%  Similarity=0.133  Sum_probs=115.9

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHH-HHHHHhhccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVE-GICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~-~l~~~L~~~~  244 (453)
                      .++.++++++....++..+..+++|++|++++|.+......    .+..+++|++|++++|.+....+. .+..      
T Consensus       279 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~~------  348 (606)
T 3t6q_A          279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI----SASNFPSLTHLSIKGNTKRLELGTGCLEN------  348 (606)
T ss_dssp             TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGG----CGGGCTTCSEEECCSCSSCCBCCSSTTTT------
T ss_pred             CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchh----hhhccCcCCEEECCCCCcccccchhhhhc------
Confidence            45556666655555555555556666666666654432211    133455555555555544321111 1111      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                        +++|++|++++|.++...      ..+..+..+++|++|++++|.+.+..+..+     ..+++|++|++++|.+++.
T Consensus       349 --l~~L~~L~l~~n~l~~~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~  415 (606)
T 3t6q_A          349 --LENLRELDLSHDDIETSD------CCNLQLRNLSHLQSLNLSYNEPLSLKTEAF-----KECPQLELLDLAFTRLKVK  415 (606)
T ss_dssp             --CTTCCEEECCSSCCCEEE------ESTTTTTTCTTCCEEECCSCSCEEECTTTT-----TTCTTCSEEECTTCCEECC
T ss_pred             --cCcCCEEECCCCcccccc------CcchhcccCCCCCEEECCCCcCCcCCHHHh-----cCCccCCeEECCCCcCCCc
Confidence              344555555555544311      002233444455555555554443222221     2234444444444444332


Q ss_pred             ccccCc-----------------CchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChh
Q 012930          325 LSKYDR-----------------SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD  387 (453)
Q Consensus       325 ~~~~~~-----------------~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  387 (453)
                      .+....                 ...+..+.   .+++|++|++++|++++..+ ..+..+..+++|+.|++++|.+++.
T Consensus       416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~  491 (606)
T 3t6q_A          416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFD---GLPALQHLNLQGNHFPKGNI-QKTNSLQTLGRLEILVLSFCDLSSI  491 (606)
T ss_dssp             TTCCTTTTCTTCCEEECTTCCCBTTCTTTTT---TCTTCCEEECTTCBCGGGEE-CSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred             ccchhhhCcccCCEEECCCCccCCcCHHHHh---CCCCCCEEECCCCCCCcccc-ccchhhccCCCccEEECCCCccCcc
Confidence            110000                 00012222   45566666666666654110 0112355566666666666666652


Q ss_pred             HHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          388 GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       388 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                           .|   ..+..+++|++|+|++|+++..    .+..+..+ +.| +|++++|.|++..+
T Consensus       492 -----~~---~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l-~~L-~L~L~~N~l~~~~~  540 (606)
T 3t6q_A          492 -----DQ---HAFTSLKMMNHVDLSHNRLTSS----SIEALSHL-KGI-YLNLASNHISIILP  540 (606)
T ss_dssp             -----CT---TTTTTCTTCCEEECCSSCCCGG----GGGGGTTC-CSC-EEECCSSCCCCCCG
T ss_pred             -----Ch---hhhccccCCCEEECCCCccCcC----ChhHhCcc-ccc-EEECcCCcccccCH
Confidence                 22   4456667777777777777664    34455553 446 77777777765443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.78  E-value=6.1e-21  Score=184.10  Aligned_cols=229  Identities=17%  Similarity=0.137  Sum_probs=127.0

Q ss_pred             ccceeccccccchHHH-hhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      .++.++++++....++ ..+..+++|++|++++|.+......    .+..+++|++|++++|.++..... +        
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~-~--------  121 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK----AFSPLRKLQKLYISKNHLVEIPPN-L--------  121 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG----GSTTCTTCCEEECCSSCCCSCCSS-C--------
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh----HhhCcCCCCEEECCCCcCCccCcc-c--------
Confidence            5666777766665543 3455667777777777765433221    145667777777777766632111 0        


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChh--HHHHHHHHHhhCC--------------
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD--FGRMVFSSLLEAS--------------  308 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~~L~~~~--------------  308 (453)
                        ..+|++|++++|.+..        ..+..+..+++|++|++++|.+...  .+..     +..+              
T Consensus       122 --~~~L~~L~l~~n~i~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~l~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          122 --PSSLVELRIHDNRIRK--------VPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-----FDGLKLNYLRISEAKLTG  186 (332)
T ss_dssp             --CTTCCEEECCSSCCCC--------CCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-----SCSCCCSCCBCCSSBCSS
T ss_pred             --cccCCEEECCCCccCc--------cCHhHhCCCccCCEEECCCCccccCCCCccc-----ccCCccCEEECcCCCCCc
Confidence              2457777777777665        2223455667777777777766431  1111     1112              


Q ss_pred             ------CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCC
Q 012930          309 ------SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN  382 (453)
Q Consensus       309 ------~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N  382 (453)
                            ++|++|++++|.+++..+        ..   +..+++|++|++++|++++    ..+..+..+++|+.|++++|
T Consensus       187 l~~~~~~~L~~L~l~~n~i~~~~~--------~~---l~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N  251 (332)
T 2ft3_A          187 IPKDLPETLNELHLDHNKIQAIEL--------ED---LLRYSKLYRLGLGHNQIRM----IENGSLSFLPTLRELHLDNN  251 (332)
T ss_dssp             CCSSSCSSCSCCBCCSSCCCCCCT--------TS---STTCTTCSCCBCCSSCCCC----CCTTGGGGCTTCCEEECCSS
T ss_pred             cCccccCCCCEEECCCCcCCccCH--------HH---hcCCCCCCEEECCCCcCCc----CChhHhhCCCCCCEEECCCC
Confidence                  244444444444443211        22   2255677777777777765    22335666777777777777


Q ss_pred             CCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHH-hcCCCCCcEEECcCCCCC
Q 012930          383 TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL-STLRRPPTSLSIADNNLG  446 (453)
Q Consensus       383 ~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~l~  446 (453)
                      .++.      +|   ..+..+++|++|++++|+|+..+...+.... ......|+.|++++|.++
T Consensus       252 ~l~~------lp---~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          252 KLSR------VP---AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCCB------CC---TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             cCee------cC---hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            7764      44   3455667777777777777664322111100 000234677777777765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.78  E-value=5.5e-18  Score=176.14  Aligned_cols=242  Identities=16%  Similarity=0.111  Sum_probs=178.3

Q ss_pred             cceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccC
Q 012930          167 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR  246 (453)
Q Consensus       167 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~  246 (453)
                      ++.+.+.++....++..+..+++|++|+|++|.+....   ...+...+++|++|+++ +.+++.++..+...       
T Consensus       272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~---~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~-------  340 (592)
T 3ogk_B          272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED---HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQY-------  340 (592)
T ss_dssp             CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH---HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHH-------
T ss_pred             ccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH---HHHHHHhCcCCCEEecc-CccCHHHHHHHHHh-------
Confidence            33444444444445666667789999999999854332   23346789999999999 67777777777665       


Q ss_pred             CcceeEEEccC-----------CCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEE
Q 012930          247 IHKIENLSIDI-----------SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILD  315 (453)
Q Consensus       247 ~~~L~~L~L~~-----------n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~  315 (453)
                      +++|++|++++           +.++.       ..+......+++|++|+++.|.+++..+..++..    +++|+.|+
T Consensus       341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~-------~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~----~~~L~~L~  409 (592)
T 3ogk_B          341 CKQLKRLRIERGADEQGMEDEEGLVSQ-------RGLIALAQGCQELEYMAVYVSDITNESLESIGTY----LKNLCDFR  409 (592)
T ss_dssp             CTTCCEEEEECCCCSSTTSSTTCCCCH-------HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH----CCSCCEEE
T ss_pred             CCCCCEEEeecCccccccccccCccCH-------HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh----CCCCcEEE
Confidence            68899999993           55554       1344455678999999999999999888877553    68999999


Q ss_pred             cC----CCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCC--CChhhHHHHHHHHhCCCCccEEeCCCCCCChhHH
Q 012930          316 LS----GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN--LCKADARDLGSALVHIPNLEILDISDNTIEDDGI  389 (453)
Q Consensus       316 Ls----~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~  389 (453)
                      ++    .|.+++...   ...++..+.   ++++|++|+++.|.  +++.++..+   ...+++|+.|++++|.+++.|+
T Consensus       410 l~~~~~~n~l~~~p~---~~~~~~~~~---~~~~L~~L~L~~~~~~l~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~  480 (592)
T 3ogk_B          410 LVLLDREERITDLPL---DNGVRSLLI---GCKKLRRFAFYLRQGGLTDLGLSYI---GQYSPNVRWMLLGYVGESDEGL  480 (592)
T ss_dssp             EEECSCCSCCSSCCC---HHHHHHHHH---HCTTCCEEEEECCGGGCCHHHHHHH---HHSCTTCCEEEECSCCSSHHHH
T ss_pred             EeecCCCccccCchH---HHHHHHHHH---hCCCCCEEEEecCCCCccHHHHHHH---HHhCccceEeeccCCCCCHHHH
Confidence            96    566775210   001223344   57899999998764  888654443   3468999999999999999875


Q ss_pred             HhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          390 RSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       390 ~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      ..+       +..+++|++|++++|.+++.+...+...+    ++|++|+|++|++++.+.
T Consensus       481 ~~~-------~~~~~~L~~L~l~~n~l~~~~~~~~~~~l----~~L~~L~ls~n~it~~~~  530 (592)
T 3ogk_B          481 MEF-------SRGCPNLQKLEMRGCCFSERAIAAAVTKL----PSLRYLWVQGYRASMTGQ  530 (592)
T ss_dssp             HHH-------HTCCTTCCEEEEESCCCBHHHHHHHHHHC----SSCCEEEEESCBCCTTCT
T ss_pred             HHH-------HhcCcccCeeeccCCCCcHHHHHHHHHhc----CccCeeECcCCcCCHHHH
Confidence            555       45668999999999999887766655544    349999999999998864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.78  E-value=3.5e-20  Score=187.74  Aligned_cols=232  Identities=17%  Similarity=0.120  Sum_probs=168.1

Q ss_pred             ccceeccccccchHH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      .++.|+++++....+ +..+.++++|+.|+|++|.+......    .+.++++|++|+|++|.+....+..+..      
T Consensus        57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------  126 (477)
T 2id5_A           57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG----VFTGLSNLTKLDISENKIVILLDYMFQD------  126 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT----SSTTCTTCCEEECTTSCCCEECTTTTTT------
T ss_pred             CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc----cccCCCCCCEEECCCCccccCChhHccc------
Confidence            578888888776664 45566778888888888876543222    2456788888888888887655544433      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                        +.+|++|++++|.+..        ..+..+..+++|++|+|++|.+++..+..+     ..+++|+.|++++|.+.+.
T Consensus       127 --l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          127 --LYNLKSLEVGDNDLVY--------ISHRAFSGLNSLEQLTLEKCNLTSIPTEAL-----SHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             --CTTCCEEEECCTTCCE--------ECTTSSTTCTTCCEEEEESCCCSSCCHHHH-----TTCTTCCEEEEESCCCCEE
T ss_pred             --cccCCEEECCCCccce--------eChhhccCCCCCCEEECCCCcCcccChhHh-----cccCCCcEEeCCCCcCcEe
Confidence              5788888888888876        334456778889999999888877443333     4578899999999888763


Q ss_pred             ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930          325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  404 (453)
Q Consensus       325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~  404 (453)
                      .+        .   .+..+++|+.|++++|.+.+    .++..+....+|+.|++++|.++.      +|.  ..+..++
T Consensus       192 ~~--------~---~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~------~~~--~~~~~l~  248 (477)
T 2id5_A          192 RD--------Y---SFKRLYRLKVLEISHWPYLD----TMTPNCLYGLNLTSLSITHCNLTA------VPY--LAVRHLV  248 (477)
T ss_dssp             CT--------T---CSCSCTTCCEEEEECCTTCC----EECTTTTTTCCCSEEEEESSCCCS------CCH--HHHTTCT
T ss_pred             Ch--------h---hcccCcccceeeCCCCcccc----ccCcccccCccccEEECcCCcccc------cCH--HHhcCcc
Confidence            32        2   33367889999999986655    355555556689999999999986      432  3467789


Q ss_pred             CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      +|++|+|++|.++...    ...+.. ..+|+.|+|++|.|++..+
T Consensus       249 ~L~~L~Ls~n~l~~~~----~~~~~~-l~~L~~L~L~~n~l~~~~~  289 (477)
T 2id5_A          249 YLRFLNLSYNPISTIE----GSMLHE-LLRLQEIQLVGGQLAVVEP  289 (477)
T ss_dssp             TCCEEECCSSCCCEEC----TTSCTT-CTTCCEEECCSSCCSEECT
T ss_pred             ccCeeECCCCcCCccC----hhhccc-cccCCEEECCCCccceECH
Confidence            9999999999988752    334555 3559999999999987654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.78  E-value=3.3e-21  Score=202.06  Aligned_cols=216  Identities=14%  Similarity=0.183  Sum_probs=134.2

Q ss_pred             HHhhhhcCCCccEEEeccccChHH-------------HHHHHHHHHh--cCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          180 ETCQLLRESKLQSLVLRWIRFEEH-------------VQALCKLLIQ--NSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       180 ~~~~l~~~~~L~~L~Ls~~~~~~~-------------~~~~~~~l~~--~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      ++..+.++++|++|+|++|.+...             ....++..+.  ++++|++|+|++|.+.+..+..+..      
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~------  271 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA------  271 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT------
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc------
Confidence            555666777777777777776541             0001112233  6677777777777777666655543      


Q ss_pred             cCCcceeEEEccCCC-CCCCCchhhHHHHHHhhcCC------CCccEEEcCCCCCChhHHH--HHHHHHhhCCCCCCEEE
Q 012930          245 KRIHKIENLSIDISS-FIENCPSSVVVELVSFLSSG------RSLCSLKLRHCHLDRDFGR--MVFSSLLEASSSLSILD  315 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~-l~~~~~~~i~~~l~~~l~~~------~~L~~L~L~~n~l~~~~~~--~l~~~L~~~~~~L~~L~  315 (453)
                        +++|++|++++|. ++.       ..++..+..+      ++|++|++++|.++ ..+.  .+     ..+++|++|+
T Consensus       272 --l~~L~~L~Ls~n~~l~~-------~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-----~~l~~L~~L~  336 (636)
T 4eco_A          272 --LPEMQLINVACNRGISG-------EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-----QKMKKLGMLE  336 (636)
T ss_dssp             --CSSCCEEECTTCTTSCH-------HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-----TTCTTCCEEE
T ss_pred             --CCCCCEEECcCCCCCcc-------ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-----ccCCCCCEEe
Confidence              4677777777776 442       0134444333      67777777777776 3444  33     3467777777


Q ss_pred             cCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC-ccEEeCCCCCCChhHHHhHHH
Q 012930          316 LSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN-LEILDISDNTIEDDGIRSLIP  394 (453)
Q Consensus       316 Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~N~i~~~g~~~l~~  394 (453)
                      +++|.+++.        +| .++   .+++|++|++++|+++.     +|..+..+++ |+.|++++|.++.      +|
T Consensus       337 L~~N~l~g~--------ip-~~~---~l~~L~~L~L~~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~l~~------lp  393 (636)
T 4eco_A          337 CLYNQLEGK--------LP-AFG---SEIKLASLNLAYNQITE-----IPANFCGFTEQVENLSFAHNKLKY------IP  393 (636)
T ss_dssp             CCSCCCEEE--------CC-CCE---EEEEESEEECCSSEEEE-----CCTTSEEECTTCCEEECCSSCCSS------CC
T ss_pred             CcCCcCccc--------hh-hhC---CCCCCCEEECCCCcccc-----ccHhhhhhcccCcEEEccCCcCcc------cc
Confidence            777777642        22 223   55677778888877773     6666777777 8888888888774      55


Q ss_pred             HHHhhcCCCC--CccEEEccCCCCChhhHHHHHHHHh-------cCCCCCcEEECcCCCCCc
Q 012930          395 YFVQASERCN--PLVELYLENCELSGRGVSQLLDTLS-------TLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       395 ~l~~~l~~~~--~L~~L~L~~n~l~~~~~~~l~~~l~-------~~~~~L~~L~Ls~N~l~~  447 (453)
                         ..+...+  +|++|++++|.++..    .+..+.       . ..+|++|++++|.|++
T Consensus       394 ---~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~~~~~~~~-~~~L~~L~Ls~N~l~~  447 (636)
T 4eco_A          394 ---NIFDAKSVSVMSAIDFSYNEIGSV----DGKNFDPLDPTPFK-GINVSSINLSNNQISK  447 (636)
T ss_dssp             ---SCCCTTCSSCEEEEECCSSCTTTT----TTCSSCTTCSSCCC-CCCEEEEECCSSCCCS
T ss_pred             ---hhhhhcccCccCEEECcCCcCCCc----chhhhccccccccc-CCCCCEEECcCCccCc
Confidence               3344333  788888888887764    333343       3 2358888888888773

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.78  E-value=1.9e-18  Score=179.65  Aligned_cols=112  Identities=15%  Similarity=0.111  Sum_probs=54.3

Q ss_pred             ccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhH
Q 012930          190 LQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV  269 (453)
Q Consensus       190 L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~  269 (453)
                      |++|+|++|...  .......+...+++|++|+|++|.+++.+...+...+..    +++|++|++++|.++..+..   
T Consensus       140 L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~----~~~L~~L~L~~n~~~~~~~~---  210 (592)
T 3ogk_B          140 LETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH----NTSLEVLNFYMTEFAKISPK---  210 (592)
T ss_dssp             CCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH----CCCCCEEECTTCCCSSCCHH---
T ss_pred             CcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc----CCCccEEEeeccCCCccCHH---
Confidence            666666655411  111122233455666666666665544433222222221    35566666666665532222   


Q ss_pred             HHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcC
Q 012930          270 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS  317 (453)
Q Consensus       270 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls  317 (453)
                       .+...+.++++|++|++++|.+.+ .+..+     ..+++|++|+++
T Consensus       211 -~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~-----~~~~~L~~L~l~  251 (592)
T 3ogk_B          211 -DLETIARNCRSLVSVKVGDFEILE-LVGFF-----KAAANLEEFCGG  251 (592)
T ss_dssp             -HHHHHHHHCTTCCEEECSSCBGGG-GHHHH-----HHCTTCCEEEEC
T ss_pred             -HHHHHHhhCCCCcEEeccCccHHH-HHHHH-----hhhhHHHhhccc
Confidence             445555556666666666665544 33222     124555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=1.5e-19  Score=172.79  Aligned_cols=210  Identities=22%  Similarity=0.169  Sum_probs=159.3

Q ss_pred             ccceeccccccchH-HHhhh--hcCCCccEEEeccccChHHHHHHHHHH-HhcCCCccEEEcCCCCCChhHHHHHHHHhh
Q 012930          166 YARCLRLQNALCVE-ETCQL--LRESKLQSLVLRWIRFEEHVQALCKLL-IQNSETLASLEFLHCKLSPSFVEGICRSLC  241 (453)
Q Consensus       166 ~l~~l~L~~~~~~~-~~~~l--~~~~~L~~L~Ls~~~~~~~~~~~~~~l-~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~  241 (453)
                      .++.|+++++.... .+..+  ..+++|++|+|++|.+... ...+..+ ....++|++|+|++|.++...+..+..   
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~---  171 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV---  171 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC---
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc---
Confidence            68888888887763 55554  6779999999999997665 2222222 112389999999999998766555543   


Q ss_pred             ccccCCcceeEEEccCCCCCCCCchhhHHHHHHhh--cCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCC
Q 012930          242 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFL--SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN  319 (453)
Q Consensus       242 ~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l--~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n  319 (453)
                           +++|++|++++|.+..    .  ..++..+  ..+++|++|+|++|.+++.  ..+...++..+++|++|++++|
T Consensus       172 -----l~~L~~L~Ls~N~l~~----~--~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~~l~~L~~L~Ls~N  238 (312)
T 1wwl_A          172 -----FPALSTLDLSDNPELG----E--RGLISALCPLKFPTLQVLALRNAGMETP--SGVCSALAAARVQLQGLDLSHN  238 (312)
T ss_dssp             -----CSSCCEEECCSCTTCH----H--HHHHHHSCTTSCTTCCEEECTTSCCCCH--HHHHHHHHHTTCCCSEEECTTS
T ss_pred             -----CCCCCEEECCCCCcCc----c--hHHHHHHHhccCCCCCEEECCCCcCcch--HHHHHHHHhcCCCCCEEECCCC
Confidence                 6899999999999865    0  0244455  7899999999999999841  2234444556799999999999


Q ss_pred             CCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhh
Q 012930          320 SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA  399 (453)
Q Consensus       320 ~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~  399 (453)
                      .+++..+          ...+..+++|++|+|++|+|+.     +|..+.  ++|+.|++++|+|++      +|   . 
T Consensus       239 ~l~~~~~----------~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~------~p---~-  291 (312)
T 1wwl_A          239 SLRDAAG----------APSCDWPSQLNSLNLSFTGLKQ-----VPKGLP--AKLSVLDLSYNRLDR------NP---S-  291 (312)
T ss_dssp             CCCSSCC----------CSCCCCCTTCCEEECTTSCCSS-----CCSSCC--SEEEEEECCSSCCCS------CC---C-
T ss_pred             cCCcccc----------hhhhhhcCCCCEEECCCCccCh-----hhhhcc--CCceEEECCCCCCCC------Ch---h-
Confidence            9997432          1222356899999999999995     666554  899999999999998      54   3 


Q ss_pred             cCCCCCccEEEccCCCCChh
Q 012930          400 SERCNPLVELYLENCELSGR  419 (453)
Q Consensus       400 l~~~~~L~~L~L~~n~l~~~  419 (453)
                      +..+++|++|++++|++++.
T Consensus       292 ~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          292 PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             TTTSCEEEEEECTTCTTTCC
T ss_pred             HhhCCCCCEEeccCCCCCCC
Confidence            67779999999999999864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.78  E-value=6.5e-20  Score=191.30  Aligned_cols=136  Identities=15%  Similarity=0.084  Sum_probs=102.5

Q ss_pred             ccceeccccccchHH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      .++.|+++++....+ +..+.++++|++|+|++|.+....+.    .+.++++|++|++++|.++...+..+..      
T Consensus        58 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~i~~l~~~~~~~------  127 (606)
T 3t6q_A           58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSIDFIPLHN------  127 (606)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT----TTSSCTTCCEEECTTSCCSCGGGSCCTT------
T ss_pred             cceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh----hhcccccccEeeccccCcccCCcchhcc------
Confidence            688899998877664 45677889999999999986544222    2567899999999999988765554433      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCC--EEEcCCCCCC
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLS--ILDLSGNSIG  322 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~--~L~Ls~n~l~  322 (453)
                        +.+|++|++++|.+.....        ..+..+++|++|++++|.+.+..+..+     ..+++|+  .|++++|.+.
T Consensus       128 --l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          128 --QKTLESLYLGSNHISSIKL--------PKGFPTEKLKVLDFQNNAIHYLSKEDM-----SSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             --CTTCCEEECCSSCCCCCCC--------CTTCCCTTCCEEECCSSCCCEECHHHH-----HTTTTCCSEEEECTTCCCC
T ss_pred             --CCcccEEECCCCcccccCc--------ccccCCcccCEEEcccCcccccChhhh-----hhhcccceeEEecCCCccC
Confidence              6889999999999887322        223348999999999999987556554     3468888  8999999887


Q ss_pred             Cccc
Q 012930          323 GWLS  326 (453)
Q Consensus       323 ~~~~  326 (453)
                      +..+
T Consensus       193 ~~~~  196 (606)
T 3t6q_A          193 GIEP  196 (606)
T ss_dssp             EECT
T ss_pred             ccCh
Confidence            6443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.77  E-value=1.8e-20  Score=178.97  Aligned_cols=217  Identities=16%  Similarity=0.068  Sum_probs=151.2

Q ss_pred             cCCCccEEEeccccChHHHHHHHHHHH-hcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCC
Q 012930          186 RESKLQSLVLRWIRFEEHVQALCKLLI-QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC  264 (453)
Q Consensus       186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~-~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~  264 (453)
                      ..++|++|++++|.+.......   ++ ..+++|++|+|++|.+++..+..-...+..    +++|++|++++|.++.  
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~--  159 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPL---PLEATGLALSSLRLRNVSWATGRSWLAELQQWL----KPGLKVLSIAQAHSPA--  159 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCC---SSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB----CSCCCEEEEECCSSCC--
T ss_pred             ccCceeEEEeeCCEeccchhhh---hhhccCCCCCEEEeecccccchhhhhHHHHhhh----ccCCCEEEeeCCCcch--
Confidence            3467999999999865433221   01 567899999999999886433111112221    5889999999999977  


Q ss_pred             chhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHh-hcCCCCC
Q 012930          265 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFS-LGAGKSL  343 (453)
Q Consensus       265 ~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~-l~~~~~~  343 (453)
                            ..+..+..+++|++|+|++|++.+...... ......+++|++|++++|.++....      .+.. +.   .+
T Consensus       160 ------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~------~~~~l~~---~l  223 (310)
T 4glp_A          160 ------FSCEQVRAFPALTSLDLSDNPGLGERGLMA-ALCPHKFPAIQNLALRNTGMETPTG------VCAALAA---AG  223 (310)
T ss_dssp             ------CCTTSCCCCTTCCEEECCSCTTCHHHHHHT-TSCTTSSCCCCSCBCCSSCCCCHHH------HHHHHHH---HT
T ss_pred             ------hhHHHhccCCCCCEEECCCCCCccchhhhH-HHhhhcCCCCCEEECCCCCCCchHH------HHHHHHh---cC
Confidence                  445667788999999999998765321100 0112356889999999999975211      1122 23   56


Q ss_pred             CcccEEEecCCCCChhhHHHHHHHHhCC---CCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhh
Q 012930          344 QSLRLLNLRGNNLCKADARDLGSALVHI---PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG  420 (453)
Q Consensus       344 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~---~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~  420 (453)
                      ++|++|+|++|++++    ..|..+..+   ++|+.|+|++|+|+.      +|   ..+.  ++|++|+|++|+|+.. 
T Consensus       224 ~~L~~L~Ls~N~l~~----~~p~~~~~~~~~~~L~~L~Ls~N~l~~------lp---~~~~--~~L~~L~Ls~N~l~~~-  287 (310)
T 4glp_A          224 VQPHSLDLSHNSLRA----TVNPSAPRCMWSSALNSLNLSFAGLEQ------VP---KGLP--AKLRVLDLSSNRLNRA-  287 (310)
T ss_dssp             CCCSSEECTTSCCCC----CCCSCCSSCCCCTTCCCEECCSSCCCS------CC---SCCC--SCCSCEECCSCCCCSC-
T ss_pred             CCCCEEECCCCCCCc----cchhhHHhccCcCcCCEEECCCCCCCc------hh---hhhc--CCCCEEECCCCcCCCC-
Confidence            889999999999987    235555555   699999999999985      55   3343  7999999999999873 


Q ss_pred             HHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930          421 VSQLLDTLSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       421 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                          +. +..+ ++|+.|++++|.|+++|
T Consensus       288 ----~~-~~~l-~~L~~L~L~~N~l~~~g  310 (310)
T 4glp_A          288 ----PQ-PDEL-PEVDNLTLDGNPFLVPG  310 (310)
T ss_dssp             ----CC-TTSC-CCCSCEECSSTTTSCCC
T ss_pred             ----ch-hhhC-CCccEEECcCCCCCCCC
Confidence                11 3443 55999999999998864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=2e-20  Score=194.78  Aligned_cols=245  Identities=21%  Similarity=0.214  Sum_probs=177.3

Q ss_pred             cCCceeeeehhh--------hcc--ccceeccccccchHHHhh-hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCcc
Q 012930          151 CDYSKLSYHCQQ--------FGH--YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLA  219 (453)
Q Consensus       151 ~~l~~l~l~~~~--------~~~--~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~  219 (453)
                      ..++.|.++.+.        +..  .++.|+++++.+..++.. +..+++|+.|+|++|.+......    .+.++++|+
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~  150 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLT  150 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHH----HhccCCCCC
Confidence            566677666542        222  689999999988776654 46789999999999997644322    256889999


Q ss_pred             EEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHH---------Hhhc-------------
Q 012930          220 SLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELV---------SFLS-------------  277 (453)
Q Consensus       220 ~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~---------~~l~-------------  277 (453)
                      +|+|++|.++...+..+..        +++|++|++++|.++......++. +.         ..+.             
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~l~~-L~~L~l~~n~l~~l~~~~~L~~L~ls~n  221 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQA--------TTSLQNLQLSSNRLTHVDLSLIPS-LFHANVSYNLLSTLAIPIAVEELDASHN  221 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTT--------CTTCCEEECTTSCCSBCCGGGCTT-CSEEECCSSCCSEEECCTTCSEEECCSS
T ss_pred             EEEeeCCcCCCCChhhhhc--------CCcCcEEECcCCCCCCcChhhhhh-hhhhhcccCccccccCCchhheeeccCC
Confidence            9999999998776655544        689999999999998754321110 00         0000             


Q ss_pred             --------CCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEE
Q 012930          278 --------SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL  349 (453)
Q Consensus       278 --------~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L  349 (453)
                              ..++|+.|+|++|.+++.  ..     +..+++|+.|+|++|.+++..+        ..++   .+++|++|
T Consensus       222 ~l~~~~~~~~~~L~~L~L~~n~l~~~--~~-----l~~l~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L  283 (597)
T 3oja_B          222 SINVVRGPVNVELTILKLQHNNLTDT--AW-----LLNYPGLVEVDLSYNELEKIMY--------HPFV---KMQRLERL  283 (597)
T ss_dssp             CCCEEECSCCSCCCEEECCSSCCCCC--GG-----GGGCTTCSEEECCSSCCCEEES--------GGGT---TCSSCCEE
T ss_pred             cccccccccCCCCCEEECCCCCCCCC--hh-----hccCCCCCEEECCCCccCCCCH--------HHhc---CccCCCEE
Confidence                    012466666666666652  11     2446889999999999887544        5555   67899999


Q ss_pred             EecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHh
Q 012930          350 NLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLS  429 (453)
Q Consensus       350 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  429 (453)
                      +|++|.++.     ++..+..+++|+.|+|++|.++.      +|   ..+..+++|++|+|++|.|+...       +.
T Consensus       284 ~Ls~N~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~------i~---~~~~~l~~L~~L~L~~N~l~~~~-------~~  342 (597)
T 3oja_B          284 YISNNRLVA-----LNLYGQPIPTLKVLDLSHNHLLH------VE---RNQPQFDRLENLYLDHNSIVTLK-------LS  342 (597)
T ss_dssp             ECTTSCCCE-----EECSSSCCTTCCEEECCSSCCCC------CG---GGHHHHTTCSEEECCSSCCCCCC-------CC
T ss_pred             ECCCCCCCC-----CCcccccCCCCcEEECCCCCCCc------cC---cccccCCCCCEEECCCCCCCCcC-------hh
Confidence            999999996     56666778999999999999986      54   33445589999999999998742       44


Q ss_pred             cCCCCCcEEECcCCCCCcc
Q 012930          430 TLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       430 ~~~~~L~~L~Ls~N~l~~~  448 (453)
                      . .++|+.|++++|++...
T Consensus       343 ~-~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          343 T-HHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             T-TCCCSEEECCSSCEEHH
T ss_pred             h-cCCCCEEEeeCCCCCCh
Confidence            4 35699999999998653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.77  E-value=6.2e-20  Score=196.75  Aligned_cols=192  Identities=17%  Similarity=0.163  Sum_probs=120.9

Q ss_pred             HhcCCCccEEEcCCCCCChh-----------------HHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHH
Q 012930          212 IQNSETLASLEFLHCKLSPS-----------------FVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS  274 (453)
Q Consensus       212 ~~~~~~L~~L~L~~n~l~~~-----------------~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~  274 (453)
                      +.++++|++|+|++|.+++.                 .|..+.  +.    .+++|+.|++++|.+..        .++.
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~--f~----~L~~L~~L~Ls~N~l~~--------~iP~  509 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS--WS----NLKDLTDVELYNCPNMT--------QLPD  509 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC--GG----GCTTCCEEEEESCTTCC--------SCCG
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh--hc----cCCCCCEEECcCCCCCc--------cChH
Confidence            45677888888888887762                 222221  00    15778888888887776        4666


Q ss_pred             hhcCCCCccEEEcCCCC-CCh-hHHHHHHHH--HhhCCCCCCEEEcCCCCCCCcccccCcCchHH--hhcCCCCCCcccE
Q 012930          275 FLSSGRSLCSLKLRHCH-LDR-DFGRMVFSS--LLEASSSLSILDLSGNSIGGWLSKYDRSGPLF--SLGAGKSLQSLRL  348 (453)
Q Consensus       275 ~l~~~~~L~~L~L~~n~-l~~-~~~~~l~~~--L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~--~l~~~~~~~~L~~  348 (453)
                      .+.++++|++|+|++|+ +++ ..|..+...  -+..+++|+.|+|++|.++ ..|        .  .++   .+++|++
T Consensus       510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip--------~~~~l~---~L~~L~~  577 (876)
T 4ecn_A          510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP--------ASASLQ---KMVKLGL  577 (876)
T ss_dssp             GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC--------CHHHHT---TCTTCCE
T ss_pred             HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC--------Chhhhh---cCCCCCE
Confidence            77788888888888887 776 666665431  1123457888888888877 333        4  455   5567777


Q ss_pred             EEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC-ccEEEccCCCCChhhHHHHHHH
Q 012930          349 LNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP-LVELYLENCELSGRGVSQLLDT  427 (453)
Q Consensus       349 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~-L~~L~L~~n~l~~~~~~~l~~~  427 (453)
                      |+|++|+++.     +| .+..+++|+.|+|++|.++.      +|   ..+..+++ |++|+|++|.++.     ++..
T Consensus       578 L~Ls~N~l~~-----lp-~~~~L~~L~~L~Ls~N~l~~------lp---~~l~~l~~~L~~L~Ls~N~L~~-----lp~~  637 (876)
T 4ecn_A          578 LDCVHNKVRH-----LE-AFGTNVKLTDLKLDYNQIEE------IP---EDFCAFTDQVEGLGFSHNKLKY-----IPNI  637 (876)
T ss_dssp             EECTTSCCCB-----CC-CCCTTSEESEEECCSSCCSC------CC---TTSCEECTTCCEEECCSSCCCS-----CCSC
T ss_pred             EECCCCCccc-----ch-hhcCCCcceEEECcCCcccc------ch---HHHhhccccCCEEECcCCCCCc-----Cchh
Confidence            7777777763     45 56667777777777777763      44   34555566 7777777777664     3333


Q ss_pred             HhcCC-CCCcEEECcCCCCCccc
Q 012930          428 LSTLR-RPPTSLSIADNNLGRFC  449 (453)
Q Consensus       428 l~~~~-~~L~~L~Ls~N~l~~~~  449 (453)
                      +.... ++|+.|++++|.|++.+
T Consensus       638 ~~~~~~~~L~~L~Ls~N~l~g~i  660 (876)
T 4ecn_A          638 FNAKSVYVMGSVDFSYNKIGSEG  660 (876)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTS
T ss_pred             hhccccCCCCEEECcCCcCCCcc
Confidence            33211 12666666666665543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.77  E-value=6.2e-20  Score=173.05  Aligned_cols=218  Identities=17%  Similarity=0.101  Sum_probs=167.2

Q ss_pred             cccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCC-CChhHHHHHHHHhhc
Q 012930          165 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCS  242 (453)
Q Consensus       165 ~~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~L~~  242 (453)
                      ..++.++++++....++. .+..+++|++|++++|.+......    .+..+++|++|++++|. ++...+..+..    
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~l~~~~~~~~~~----  103 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVDPATFHG----  103 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSCTTCCCCCTTTTTT----
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh----hcCCccCCCEEeCCCCCCccccCHHHhcC----
Confidence            368888888888777654 466789999999999986654222    25678999999999996 77655555543    


Q ss_pred             cccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCC
Q 012930          243 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG  322 (453)
Q Consensus       243 ~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~  322 (453)
                          +++|++|++++|.++.        ..+..+..+++|++|++++|.+.+..+..+     ..+++|++|++++|.++
T Consensus       104 ----l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A          104 ----LGRLHTLHLDRCGLQE--------LGPGLFRGLAALQYLYLQDNALQALPDDTF-----RDLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             ----CTTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCC
T ss_pred             ----CcCCCEEECCCCcCCE--------ECHhHhhCCcCCCEEECCCCcccccCHhHh-----ccCCCccEEECCCCccc
Confidence                5899999999999987        345667889999999999999987433322     45789999999999998


Q ss_pred             CcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCC
Q 012930          323 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER  402 (453)
Q Consensus       323 ~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~  402 (453)
                      +..+        ..+.   .+++|++|++++|.+++    ..+..+..+++|+.|++++|.+++      ++.  ..+..
T Consensus       167 ~~~~--------~~~~---~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~------~~~--~~~~~  223 (285)
T 1ozn_A          167 SVPE--------RAFR---GLHSLDRLLLHQNRVAH----VHPHAFRDLGRLMTLYLFANNLSA------LPT--EALAP  223 (285)
T ss_dssp             EECT--------TTTT---TCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCSC------CCH--HHHTT
T ss_pred             ccCH--------HHhc---CccccCEEECCCCcccc----cCHhHccCcccccEeeCCCCcCCc------CCH--HHccc
Confidence            6332        2333   67899999999999997    346778899999999999999987      332  44677


Q ss_pred             CCCccEEEccCCCCChh-hHHHHHHHHhc
Q 012930          403 CNPLVELYLENCELSGR-GVSQLLDTLST  430 (453)
Q Consensus       403 ~~~L~~L~L~~n~l~~~-~~~~l~~~l~~  430 (453)
                      +++|++|++++|.++.. ....+...+..
T Consensus       224 l~~L~~L~l~~N~~~c~~~~~~~~~~l~~  252 (285)
T 1ozn_A          224 LRALQYLRLNDNPWVCDCRARPLWAWLQK  252 (285)
T ss_dssp             CTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred             CcccCEEeccCCCccCCCCcHHHHHHHHh
Confidence            89999999999998643 22234444444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=1.8e-19  Score=193.18  Aligned_cols=183  Identities=16%  Similarity=0.123  Sum_probs=103.4

Q ss_pred             ccceeccccccchH------------------HHhhhh--cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCC
Q 012930          166 YARCLRLQNALCVE------------------ETCQLL--RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH  225 (453)
Q Consensus       166 ~l~~l~L~~~~~~~------------------~~~~l~--~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~  225 (453)
                      .++.|+|+++.+..                  +|..+.  ++++|+.|+|++|.+....+    ..+.++++|++|+|++
T Consensus       449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP----~~l~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP----DFLYDLPELQSLNIAC  524 (876)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC----GGGGGCSSCCEEECTT
T ss_pred             CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh----HHHhCCCCCCEEECcC
Confidence            56666666666655                  566655  67777777777776443322    2245677777777777


Q ss_pred             CC-CCh-hHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHH--hhcCCCCccEEEcCCCCCChhHHHHHH
Q 012930          226 CK-LSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVF  301 (453)
Q Consensus       226 n~-l~~-~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~--~l~~~~~L~~L~L~~n~l~~~~~~~l~  301 (453)
                      |. +++ ..|..+... ......+++|+.|++++|.++.         ++.  .+..+++|+.|+|++|.+. ..+ .  
T Consensus       525 N~~lsg~~iP~~i~~L-~~~~~~l~~L~~L~Ls~N~L~~---------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~--  590 (876)
T 4ecn_A          525 NRGISAAQLKADWTRL-ADDEDTGPKIQIFYMGYNNLEE---------FPASASLQKMVKLGLLDCVHNKVR-HLE-A--  590 (876)
T ss_dssp             CTTSCHHHHHHHHHHH-HHCTTTTTTCCEEECCSSCCCB---------CCCHHHHTTCTTCCEEECTTSCCC-BCC-C--
T ss_pred             CCCcccccchHHHHhh-hhcccccCCccEEEeeCCcCCc---------cCChhhhhcCCCCCEEECCCCCcc-cch-h--
Confidence            76 776 555555432 1000013467777777777664         333  5666777777777777766 344 2  


Q ss_pred             HHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc-ccEEEecCCCCChhhHHHHHHHHhCCC--CccEEe
Q 012930          302 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS-LRLLNLRGNNLCKADARDLGSALVHIP--NLEILD  378 (453)
Q Consensus       302 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~~~--~L~~L~  378 (453)
                         +..+++|+.|+|++|.++. .+        ..+.   .+++ |++|+|++|.++.     +|..+...+  +|+.|+
T Consensus       591 ---~~~L~~L~~L~Ls~N~l~~-lp--------~~l~---~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~  650 (876)
T 4ecn_A          591 ---FGTNVKLTDLKLDYNQIEE-IP--------EDFC---AFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVD  650 (876)
T ss_dssp             ---CCTTSEESEEECCSSCCSC-CC--------TTSC---EECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEE
T ss_pred             ---hcCCCcceEEECcCCcccc-ch--------HHHh---hccccCCEEECcCCCCCc-----CchhhhccccCCCCEEE
Confidence               2345667777777776662 22        3333   3444 5566666665553     343333332  255555


Q ss_pred             CCCCCCCh
Q 012930          379 ISDNTIED  386 (453)
Q Consensus       379 Ls~N~i~~  386 (453)
                      +++|.+++
T Consensus       651 Ls~N~l~g  658 (876)
T 4ecn_A          651 FSYNKIGS  658 (876)
T ss_dssp             CCSSCTTT
T ss_pred             CcCCcCCC
Confidence            55555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.76  E-value=8.4e-20  Score=174.37  Aligned_cols=213  Identities=19%  Similarity=0.134  Sum_probs=157.9

Q ss_pred             ccceeccccccchH-HHhhh--hcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhc
Q 012930          166 YARCLRLQNALCVE-ETCQL--LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS  242 (453)
Q Consensus       166 ~l~~l~L~~~~~~~-~~~~l--~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~  242 (453)
                      .++.++++++.... .+..+  ...++|++|++++|.+......+....+..+++|++|+|++|.++...+..+..    
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~----  167 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA----  167 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC----
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc----
Confidence            47888888877654 33344  567999999999999765322222222447899999999999997665554432    


Q ss_pred             cccCCcceeEEEccCCCCCCCCchhhHHHHHH--hhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCC
Q 012930          243 KRKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS  320 (453)
Q Consensus       243 ~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~--~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~  320 (453)
                          +++|++|++++|.+...      ..++.  .+..+++|++|+|++|.++. .+ .++.+++..+++|++|+|++|.
T Consensus       168 ----l~~L~~L~Ls~N~l~~~------~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~-~~~~~l~~~l~~L~~L~Ls~N~  235 (310)
T 4glp_A          168 ----FPALTSLDLSDNPGLGE------RGLMAALCPHKFPAIQNLALRNTGMET-PT-GVCAALAAAGVQPHSLDLSHNS  235 (310)
T ss_dssp             ----CTTCCEEECCSCTTCHH------HHHHTTSCTTSSCCCCSCBCCSSCCCC-HH-HHHHHHHHHTCCCSSEECTTSC
T ss_pred             ----CCCCCEEECCCCCCccc------hhhhHHHhhhcCCCCCEEECCCCCCCc-hH-HHHHHHHhcCCCCCEEECCCCC
Confidence                58899999999997641      01322  23678999999999999974 22 2333444557999999999999


Q ss_pred             CCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhc
Q 012930          321 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS  400 (453)
Q Consensus       321 l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l  400 (453)
                      +++..|        ..+..+..+++|++|+|++|+|+.     +|..+.  ++|+.|+|++|+|++      +|.    +
T Consensus       236 l~~~~p--------~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~--~~L~~L~Ls~N~l~~------~~~----~  290 (310)
T 4glp_A          236 LRATVN--------PSAPRCMWSSALNSLNLSFAGLEQ-----VPKGLP--AKLRVLDLSSNRLNR------APQ----P  290 (310)
T ss_dssp             CCCCCC--------SCCSSCCCCTTCCCEECCSSCCCS-----CCSCCC--SCCSCEECCSCCCCS------CCC----T
T ss_pred             CCccch--------hhHHhccCcCcCCEEECCCCCCCc-----hhhhhc--CCCCEEECCCCcCCC------Cch----h
Confidence            998544        455544445799999999999995     565553  799999999999997      432    4


Q ss_pred             CCCCCccEEEccCCCCChh
Q 012930          401 ERCNPLVELYLENCELSGR  419 (453)
Q Consensus       401 ~~~~~L~~L~L~~n~l~~~  419 (453)
                      ..+++|+.|+|++|+|++.
T Consensus       291 ~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          291 DELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             TSCCCCSCEECSSTTTSCC
T ss_pred             hhCCCccEEECcCCCCCCC
Confidence            6679999999999999874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=1.1e-19  Score=182.09  Aligned_cols=225  Identities=17%  Similarity=0.118  Sum_probs=170.8

Q ss_pred             eeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCc
Q 012930          169 CLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIH  248 (453)
Q Consensus       169 ~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~  248 (453)
                      .++..+..+..+|..+.  .+++.|+|++|.+......    .+.++++|++|+|++|.|+...+..+..        +.
T Consensus        47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~i~~~~~~~--------l~  112 (440)
T 3zyj_A           47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEIGAFNG--------LA  112 (440)
T ss_dssp             EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTT----TTSSCSSCCEEECCSSCCCEECGGGGTT--------CS
T ss_pred             EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHH----HhhCCCCCCEEECCCCcCCccChhhccC--------Cc
Confidence            34445544554554332  6899999999997654322    2568899999999999998776665544        68


Q ss_pred             ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccccc
Q 012930          249 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  328 (453)
Q Consensus       249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~  328 (453)
                      +|++|++++|.++.        .....+..+++|++|+|++|.+.......     +..+++|++|++++|...+..+  
T Consensus       113 ~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~--  177 (440)
T 3zyj_A          113 NLNTLELFDNRLTT--------IPNGAFVYLSKLKELWLRNNPIESIPSYA-----FNRIPSLRRLDLGELKRLSYIS--  177 (440)
T ss_dssp             SCCEEECCSSCCSS--------CCTTTSCSCSSCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEEC--
T ss_pred             cCCEEECCCCcCCe--------eCHhHhhccccCceeeCCCCcccccCHHH-----hhhCcccCEeCCCCCCCcceeC--
Confidence            99999999999987        23346788999999999999998633322     3457999999999965433222  


Q ss_pred             CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccE
Q 012930          329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE  408 (453)
Q Consensus       329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~  408 (453)
                            .  ..+..+++|++|+|++|+++.     ++ .+..+++|+.|+|++|.|++.     .|   ..+..+++|++
T Consensus       178 ------~--~~~~~l~~L~~L~L~~n~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~~  235 (440)
T 3zyj_A          178 ------E--GAFEGLSNLRYLNLAMCNLRE-----IP-NLTPLIKLDELDLSGNHLSAI-----RP---GSFQGLMHLQK  235 (440)
T ss_dssp             ------T--TTTTTCSSCCEEECTTSCCSS-----CC-CCTTCSSCCEEECTTSCCCEE-----CT---TTTTTCTTCCE
T ss_pred             ------c--chhhcccccCeecCCCCcCcc-----cc-ccCCCcccCEEECCCCccCcc-----Ch---hhhccCccCCE
Confidence                  1  223478999999999999996     44 477889999999999999872     23   56888899999


Q ss_pred             EEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930          409 LYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       409 L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                      |+|++|+|+..    .+..+.. .++|+.|+|++|.|++..
T Consensus       236 L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~N~l~~~~  271 (440)
T 3zyj_A          236 LWMIQSQIQVI----ERNAFDN-LQSLVEINLAHNNLTLLP  271 (440)
T ss_dssp             EECTTCCCCEE----CTTSSTT-CTTCCEEECTTSCCCCCC
T ss_pred             EECCCCceeEE----ChhhhcC-CCCCCEEECCCCCCCccC
Confidence            99999999885    3445555 356999999999998644

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.76  E-value=1.1e-19  Score=170.15  Aligned_cols=202  Identities=15%  Similarity=0.115  Sum_probs=151.8

Q ss_pred             cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCc
Q 012930          186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  265 (453)
Q Consensus       186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~  265 (453)
                      .+.+|+.|++++|.+.....      +..+++|++|++++|.+++.  ..+..        +++|++|++++|.++.   
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~------l~~l~~L~~L~l~~n~l~~~--~~l~~--------l~~L~~L~L~~n~l~~---   99 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQG------IQYLPNVRYLALGGNKLHDI--SALKE--------LTNLTYLILTGNQLQS---   99 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTT------GGGCTTCCEEECTTSCCCCC--GGGTT--------CTTCCEEECTTSCCCC---
T ss_pred             cccceeeeeeCCCCcccccc------cccCCCCcEEECCCCCCCCc--hhhcC--------CCCCCEEECCCCccCc---
Confidence            45788999998888554321      45788999999999988763  22222        5889999999999887   


Q ss_pred             hhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930          266 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  345 (453)
Q Consensus       266 ~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~  345 (453)
                           ..+..+..+++|++|++++|.+.+..+..     +..+++|++|++++|.+++..+        ..+.   .+++
T Consensus       100 -----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~--------~~~~---~l~~  158 (272)
T 3rfs_A          100 -----LPNGVFDKLTNLKELVLVENQLQSLPDGV-----FDKLTNLTYLNLAHNQLQSLPK--------GVFD---KLTN  158 (272)
T ss_dssp             -----CCTTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT--------TTTT---TCTT
T ss_pred             -----cChhHhcCCcCCCEEECCCCcCCccCHHH-----hccCCCCCEEECCCCccCccCH--------HHhc---cCcc
Confidence                 33445678899999999999988643322     2457899999999999886433        2233   6789


Q ss_pred             ccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHH
Q 012930          346 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL  425 (453)
Q Consensus       346 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~  425 (453)
                      |++|++++|++++    ..+..+..+++|+.|++++|.+++      ++.  ..+..+++|++|++++|.++..      
T Consensus       159 L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~l~~N~~~~~------  220 (272)
T 3rfs_A          159 LTELDLSYNQLQS----LPEGVFDKLTQLKDLRLYQNQLKS------VPD--GVFDRLTSLQYIWLHDNPWDCT------  220 (272)
T ss_dssp             CCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSSCBCCC------
T ss_pred             CCEEECCCCCcCc----cCHHHhcCCccCCEEECCCCcCCc------cCH--HHHhCCcCCCEEEccCCCcccc------
Confidence            9999999999986    234456788999999999999986      332  4467789999999999988753      


Q ss_pred             HHHhcCCCCCcEEECcCCCCCccccc
Q 012930          426 DTLSTLRRPPTSLSIADNNLGRFCAN  451 (453)
Q Consensus       426 ~~l~~~~~~L~~L~Ls~N~l~~~~~~  451 (453)
                            .+.|+.|+++.|.+++.+|.
T Consensus       221 ------~~~l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          221 ------CPGIRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             ------TTTTHHHHHHHHHTGGGBBC
T ss_pred             ------CcHHHHHHHHHHhCCCcccC
Confidence                  23478888888888887764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.76  E-value=1.4e-19  Score=181.99  Aligned_cols=225  Identities=19%  Similarity=0.119  Sum_probs=170.0

Q ss_pred             eeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCc
Q 012930          169 CLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIH  248 (453)
Q Consensus       169 ~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~  248 (453)
                      .++.++..+..++..+.  ++++.|+|++|.+......    .+.++++|++|+|++|.|+...+..+..        +.
T Consensus        58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--------l~  123 (452)
T 3zyi_A           58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIRQIEVGAFNG--------LA  123 (452)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTT--------CT
T ss_pred             EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHH----HcCCCCCCCEEECCCCccCCcChhhccC--------cc
Confidence            34444444444443222  6899999999997654332    2568899999999999998776665544        68


Q ss_pred             ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccccc
Q 012930          249 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  328 (453)
Q Consensus       249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~  328 (453)
                      +|++|++++|.++.        .....+..+++|++|+|++|.+.......     +..+++|+.|++++|...+..+  
T Consensus       124 ~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~--  188 (452)
T 3zyi_A          124 SLNTLELFDNWLTV--------IPSGAFEYLSKLRELWLRNNPIESIPSYA-----FNRVPSLMRLDLGELKKLEYIS--  188 (452)
T ss_dssp             TCCEEECCSSCCSB--------CCTTTSSSCTTCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEEC--
T ss_pred             cCCEEECCCCcCCc--------cChhhhcccCCCCEEECCCCCcceeCHhH-----HhcCCcccEEeCCCCCCccccC--
Confidence            99999999999987        33445778999999999999998633222     3557999999999965433222  


Q ss_pred             CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccE
Q 012930          329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE  408 (453)
Q Consensus       329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~  408 (453)
                            .  ..+..+++|++|+|++|++++     ++ .+..+++|+.|+|++|.|++.     .|   ..+..+++|++
T Consensus       189 ------~--~~~~~l~~L~~L~L~~n~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~~  246 (452)
T 3zyi_A          189 ------E--GAFEGLFNLKYLNLGMCNIKD-----MP-NLTPLVGLEELEMSGNHFPEI-----RP---GSFHGLSSLKK  246 (452)
T ss_dssp             ------T--TTTTTCTTCCEEECTTSCCSS-----CC-CCTTCTTCCEEECTTSCCSEE-----CG---GGGTTCTTCCE
T ss_pred             ------h--hhccCCCCCCEEECCCCcccc-----cc-cccccccccEEECcCCcCccc-----Cc---ccccCccCCCE
Confidence                  1  223378999999999999986     33 477889999999999999872     33   56888899999


Q ss_pred             EEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930          409 LYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       409 L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                      |+|++|+++..    .+..+..+ ++|+.|+|++|.|++..
T Consensus       247 L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~N~l~~~~  282 (452)
T 3zyi_A          247 LWVMNSQVSLI----ERNAFDGL-ASLVELNLAHNNLSSLP  282 (452)
T ss_dssp             EECTTSCCCEE----CTTTTTTC-TTCCEEECCSSCCSCCC
T ss_pred             EEeCCCcCceE----CHHHhcCC-CCCCEEECCCCcCCccC
Confidence            99999999885    34455663 56999999999998644

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.75  E-value=2.5e-19  Score=171.58  Aligned_cols=215  Identities=19%  Similarity=0.143  Sum_probs=155.6

Q ss_pred             ccceeccccccchHHH-hhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      .++.++++++....++ ..+..+++|++|+|++|.+.....      +..+++|++|++++|.+++..         .  
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~l~---------~--   97 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL---------V--   97 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE------ETTCTTCCEEECCSSEEEEEE---------E--
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh------hhhcCCCCEEECcCCcccccc---------C--
Confidence            5777788777766644 456677888888888888654322      457788888888888776422         1  


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                        .++|++|++++|.++...           ...+++|++|++++|.+++..+..+     ..+++|++|++++|.+++.
T Consensus        98 --~~~L~~L~l~~n~l~~~~-----------~~~~~~L~~L~l~~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           98 --GPSIETLHAANNNISRVS-----------CSRGQGKKNIYLANNKITMLRDLDE-----GCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             --CTTCCEEECCSSCCSEEE-----------ECCCSSCEEEECCSSCCCSGGGBCT-----GGGSSEEEEECTTSCCCEE
T ss_pred             --CCCcCEEECCCCccCCcC-----------ccccCCCCEEECCCCCCCCccchhh-----hccCCCCEEECCCCCCCcc
Confidence              367888888888887621           1246789999999998887433332     3368899999999998864


Q ss_pred             ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930          325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  404 (453)
Q Consensus       325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~  404 (453)
                      .+        ..+.  ..+++|++|+|++|.++.     ++ ....+++|+.|++++|.|++      +|   ..+..++
T Consensus       160 ~~--------~~~~--~~l~~L~~L~L~~N~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~------l~---~~~~~l~  214 (317)
T 3o53_A          160 NF--------AELA--ASSDTLEHLNLQYNFIYD-----VK-GQVVFAKLKTLDLSSNKLAF------MG---PEFQSAA  214 (317)
T ss_dssp             EG--------GGGG--GGTTTCCEEECTTSCCCE-----EE-CCCCCTTCCEEECCSSCCCE------EC---GGGGGGT
T ss_pred             cH--------HHHh--hccCcCCEEECCCCcCcc-----cc-cccccccCCEEECCCCcCCc------ch---hhhcccC
Confidence            33        3332  145789999999999886     22 23358899999999999987      44   3356668


Q ss_pred             CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930          405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  446 (453)
Q Consensus       405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  446 (453)
                      +|++|+|++|+|+.     ++..+.. .++|+.|++++|.++
T Consensus       215 ~L~~L~L~~N~l~~-----l~~~~~~-l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          215 GVTWISLRNNKLVL-----IEKALRF-SQNLEHFDLRGNGFH  250 (317)
T ss_dssp             TCSEEECTTSCCCE-----ECTTCCC-CTTCCEEECTTCCCB
T ss_pred             cccEEECcCCcccc-----hhhHhhc-CCCCCEEEccCCCcc
Confidence            99999999999986     4556666 456999999999987

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.75  E-value=5.7e-20  Score=176.13  Aligned_cols=213  Identities=16%  Similarity=0.087  Sum_probs=167.6

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.|+++++.....+. +..+++|++|++++|.+...         ...++|++|++++|.++...+..          
T Consensus        59 ~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---------~~~~~L~~L~l~~n~l~~~~~~~----------  118 (317)
T 3o53_A           59 KLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVSCSR----------  118 (317)
T ss_dssp             TCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCSEEEECC----------
T ss_pred             cCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---------cCCCCcCEEECCCCccCCcCccc----------
Confidence            58888898887765444 77889999999999986542         24489999999999998654322          


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                       +++|++|++++|.++.        ..+..+..+++|++|++++|.+.+..+..+    ...+++|++|++++|.+++. 
T Consensus       119 -~~~L~~L~l~~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~l~~L~~L~L~~N~l~~~-  184 (317)
T 3o53_A          119 -GQGKKNIYLANNKITM--------LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----AASSDTLEHLNLQYNFIYDV-  184 (317)
T ss_dssp             -CSSCEEEECCSSCCCS--------GGGBCTGGGSSEEEEECTTSCCCEEEGGGG----GGGTTTCCEEECTTSCCCEE-
T ss_pred             -cCCCCEEECCCCCCCC--------ccchhhhccCCCCEEECCCCCCCcccHHHH----hhccCcCCEEECCCCcCccc-
Confidence             4789999999999988        344566788999999999999988555444    23468999999999999852 


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  405 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~  405 (453)
                                  .....+++|++|+|++|+++.     ++..+..+++|+.|++++|.|+.      +|   ..+..+++
T Consensus       185 ------------~~~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~L~~N~l~~------l~---~~~~~l~~  238 (317)
T 3o53_A          185 ------------KGQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL------IE---KALRFSQN  238 (317)
T ss_dssp             ------------ECCCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE------EC---TTCCCCTT
T ss_pred             ------------ccccccccCCEEECCCCcCCc-----chhhhcccCcccEEECcCCcccc------hh---hHhhcCCC
Confidence                        111246899999999999996     55668899999999999999996      66   55788899


Q ss_pred             ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcC
Q 012930          406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIAD  442 (453)
Q Consensus       406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  442 (453)
                      |+.|++++|.++...   ++..+..+ +.|+.|++++
T Consensus       239 L~~L~l~~N~~~~~~---~~~~~~~~-~~L~~l~l~~  271 (317)
T 3o53_A          239 LEHFDLRGNGFHCGT---LRDFFSKN-QRVQTVAKQT  271 (317)
T ss_dssp             CCEEECTTCCCBHHH---HHHHHHTC-HHHHHHHHHH
T ss_pred             CCEEEccCCCccCcC---HHHHHhcc-ccceEEECCC
Confidence            999999999998432   45555552 3377777763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.75  E-value=1.2e-19  Score=170.32  Aligned_cols=211  Identities=17%  Similarity=0.117  Sum_probs=104.1

Q ss_pred             CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchh
Q 012930          188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  267 (453)
Q Consensus       188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~  267 (453)
                      .+|++|++++|.+......    .+..+++|++|++++|.++...+..+..        +++|++|++++|.++.     
T Consensus        28 ~~l~~L~ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~-----   90 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS-----   90 (276)
T ss_dssp             TTCCEEECTTCCCCEECTT----TTTTCTTCSEEECTTCCCCEECTTTTTT--------CTTCCEEECTTCCCCE-----
T ss_pred             CCccEEECCCCcccccCHh----HhccccCCcEEECCCCcCCccCHHHccC--------CcCCCEEECCCCccCc-----
Confidence            3466666666654432211    1345566666666666665443333322        3556666666666654     


Q ss_pred             hHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCccc
Q 012930          268 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR  347 (453)
Q Consensus       268 i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~  347 (453)
                         ..+..+.++++|++|++++|.+.+..+..     +..+++|++|++++|.+++..       +|..+.   .+++|+
T Consensus        91 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~-------l~~~~~---~l~~L~  152 (276)
T 2z62_A           91 ---LALGAFSGLSSLQKLVAVETNLASLENFP-----IGHLKTLKELNVAHNLIQSFK-------LPEYFS---NLTNLE  152 (276)
T ss_dssp             ---ECTTTTTTCTTCCEEECTTSCCCCSTTCC-----CTTCTTCCEEECCSSCCCCCC-------CCGGGG---GCTTCC
T ss_pred             ---cChhhhcCCccccEEECCCCCccccCchh-----cccCCCCCEEECcCCccceec-------Cchhhc---cCCCCC
Confidence               22234555666666666666655422211     133456666666666665421       113344   445666


Q ss_pred             EEEecCCCCChhhHHHHHHHHhCCCCcc-EEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHH
Q 012930          348 LLNLRGNNLCKADARDLGSALVHIPNLE-ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD  426 (453)
Q Consensus       348 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~  426 (453)
                      +|++++|++++.....+ ..+..++.|. .|++++|.+++      ++   .......+|++|++++|+++..    ...
T Consensus       153 ~L~Ls~N~l~~~~~~~~-~~l~~L~~l~l~L~ls~n~l~~------~~---~~~~~~~~L~~L~L~~n~l~~~----~~~  218 (276)
T 2z62_A          153 HLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNF------IQ---PGAFKEIRLKELALDTNQLKSV----PDG  218 (276)
T ss_dssp             EEECCSSCCCEECGGGG-HHHHTCTTCCEEEECCSSCCCE------EC---TTSSCSCCEEEEECCSSCCSCC----CTT
T ss_pred             EEECCCCCCCcCCHHHh-hhhhhccccceeeecCCCcccc------cC---ccccCCCcccEEECCCCceeec----CHh
Confidence            66666666654211111 1122233333 56666666654      22   1122223566666666666552    112


Q ss_pred             HHhcCCCCCcEEECcCCCCCcc
Q 012930          427 TLSTLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       427 ~l~~~~~~L~~L~Ls~N~l~~~  448 (453)
                      .+.. .++|++|++++|+++..
T Consensus       219 ~~~~-l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          219 IFDR-LTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             TTTT-CCSCCEEECCSSCBCCC
T ss_pred             Hhcc-cccccEEEccCCccccc
Confidence            2233 23466666666666543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.75  E-value=1.3e-18  Score=178.19  Aligned_cols=47  Identities=13%  Similarity=0.159  Sum_probs=29.3

Q ss_pred             hhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930          275 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  323 (453)
Q Consensus       275 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  323 (453)
                      .+..+++|+.|++++|.+.+..+..+.....  .++|++|++++|.+++
T Consensus       215 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~  261 (520)
T 2z7x_B          215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVW--HTTVWYFSISNVKLQG  261 (520)
T ss_dssp             GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH--TSSCSEEEEEEEEEES
T ss_pred             hhccccchhhccccccccCHHHHHHHHHHhh--hCcccEEEeecccccC
Confidence            5667777777777777776665555544332  2466666666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.75  E-value=6.7e-19  Score=171.21  Aligned_cols=225  Identities=16%  Similarity=0.151  Sum_probs=167.1

Q ss_pred             ccceeccccccchHHHhh-hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCC-CCChhHHHHHHHHhhcc
Q 012930          166 YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSK  243 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~  243 (453)
                      .++.++++++....++.. +..+++|++|++++|.+.....   ...+..+++|++|++++| .++...+..+..     
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-----  172 (353)
T 2z80_A          101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE---TSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-----  172 (353)
T ss_dssp             TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS---SCSCTTCTTCCEEEEEESSSCCEECTTTTTT-----
T ss_pred             CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc---hhhhccCCCCcEEECCCCccccccCHHHccC-----
Confidence            578888888877776655 5667888888888887653211   012456788889998888 466544444433     


Q ss_pred             ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930          244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  323 (453)
Q Consensus       244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  323 (453)
                         +++|++|++++|.++.        ..+..+..+++|++|++++|.+.. .+..+.    ..+++|+.|++++|.+++
T Consensus       173 ---l~~L~~L~l~~n~l~~--------~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~----~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          173 ---LTFLEELEIDASDLQS--------YEPKSLKSIQNVSHLILHMKQHIL-LLEIFV----DVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             ---CCEEEEEEEEETTCCE--------ECTTTTTTCSEEEEEEEECSCSTT-HHHHHH----HHTTTEEEEEEESCBCTT
T ss_pred             ---CCCCCEEECCCCCcCc--------cCHHHHhccccCCeecCCCCcccc-chhhhh----hhcccccEEECCCCcccc
Confidence               5889999999998877        445677889999999999999865 444332    336899999999999986


Q ss_pred             cccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCC
Q 012930          324 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC  403 (453)
Q Consensus       324 ~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~  403 (453)
                      ..+        ..+........++.++++++.+++.++..+|..+..+++|+.|++++|+|+.      +|.  ..+..+
T Consensus       237 ~~~--------~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~------i~~--~~~~~l  300 (353)
T 2z80_A          237 FHF--------SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS------VPD--GIFDRL  300 (353)
T ss_dssp             CCC--------C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC------CCT--TTTTTC
T ss_pred             ccc--------cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc------cCH--HHHhcC
Confidence            433        2333333567899999999999999999999999999999999999999986      552  335788


Q ss_pred             CCccEEEccCCCCChhh--HHHHHHHHhc
Q 012930          404 NPLVELYLENCELSGRG--VSQLLDTLST  430 (453)
Q Consensus       404 ~~L~~L~L~~n~l~~~~--~~~l~~~l~~  430 (453)
                      ++|++|++++|+++...  ...+...+..
T Consensus       301 ~~L~~L~L~~N~~~~~~~~l~~l~~~~~~  329 (353)
T 2z80_A          301 TSLQKIWLHTNPWDCSCPRIDYLSRWLNK  329 (353)
T ss_dssp             TTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence            99999999999998753  3344455554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.75  E-value=1.9e-17  Score=145.58  Aligned_cols=140  Identities=14%  Similarity=0.073  Sum_probs=75.4

Q ss_pred             HHHHHHhhcCCCCccEEEcCCC-CCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCccc
Q 012930          269 VVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR  347 (453)
Q Consensus       269 ~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~  347 (453)
                      .+.+...+..+++|++|+|++| .+++.+...++.++..+ ++|++|+|++|.|++.+    +..+...+.   ..++|+
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g----~~~l~~~L~---~n~~L~   96 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPV----AFALAEMLK---VNNTLK   96 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHH----HHHHHHHHH---HCSSCC
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHH----HHHHHHHHH---hCCCcC
Confidence            4467777777888888888888 88887777777765442 55555555555555321    122223333   223455


Q ss_pred             EEEecCCCCChhhHHHHHHHHhCCCCccEEeC--CCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhh
Q 012930          348 LLNLRGNNLCKADARDLGSALVHIPNLEILDI--SDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG  420 (453)
Q Consensus       348 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L--s~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~  420 (453)
                      +|+|++|.|++.|+..++.++..+++|++|+|  ++|.|+++|+..+..    .+..++.|++|+|++|.+++.|
T Consensus        97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~----~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A           97 SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN----MLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH----HHHHCSSCCEEECCCSSHHHHH
T ss_pred             EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH----HHHhCCCcCEEeccCCCCChHH
Confidence            55555555555555555555555555555555  445555555444442    2233344555555555544443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.75  E-value=1.1e-19  Score=189.71  Aligned_cols=142  Identities=16%  Similarity=0.134  Sum_probs=92.6

Q ss_pred             hhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCC
Q 012930          275 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN  354 (453)
Q Consensus       275 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n  354 (453)
                      .+..+++|++|++++|.+.+..+..+     ..+++|++|++++|.+++..       +|..+   ..+++|++|++++|
T Consensus       419 ~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~-------~~~~~---~~l~~L~~L~Ls~n  483 (606)
T 3vq2_A          419 AFLSLEKLLYLDISYTNTKIDFDGIF-----LGLTSLNTLKMAGNSFKDNT-------LSNVF---ANTTNLTFLDLSKC  483 (606)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTT-----TTCTTCCEEECTTCEEGGGE-------ECSCC---TTCTTCCEEECTTS
T ss_pred             hhhccccCCEEECcCCCCCccchhhh-----cCCCCCCEEECCCCcCCCcc-------hHHhh---ccCCCCCEEECCCC
Confidence            34455566666666665554333322     23456666666666555310       11223   36678888888888


Q ss_pred             CCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCC
Q 012930          355 NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRP  434 (453)
Q Consensus       355 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~  434 (453)
                      ++++    ..+..+..+++|+.|++++|++++.     .|   ..+..+++|++|++++|+|+.     ++..+..+.++
T Consensus       484 ~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~~L~l~~N~l~~-----~p~~~~~l~~~  546 (606)
T 3vq2_A          484 QLEQ----ISWGVFDTLHRLQLLNMSHNNLLFL-----DS---SHYNQLYSLSTLDCSFNRIET-----SKGILQHFPKS  546 (606)
T ss_dssp             CCCE----ECTTTTTTCTTCCEEECCSSCCSCE-----EG---GGTTTCTTCCEEECTTSCCCC-----EESCGGGSCTT
T ss_pred             cCCc----cChhhhcccccCCEEECCCCcCCCc-----CH---HHccCCCcCCEEECCCCcCcc-----cCHhHhhhccc
Confidence            8876    3456677888888888888888762     34   557777888888888888876     45556665556


Q ss_pred             CcEEECcCCCCCcc
Q 012930          435 PTSLSIADNNLGRF  448 (453)
Q Consensus       435 L~~L~Ls~N~l~~~  448 (453)
                      |++|++++|++...
T Consensus       547 L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          547 LAFFNLTNNSVACI  560 (606)
T ss_dssp             CCEEECCSCCCCCS
T ss_pred             CcEEEccCCCcccC
Confidence            88888888887653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.75  E-value=4.3e-20  Score=178.13  Aligned_cols=139  Identities=21%  Similarity=0.175  Sum_probs=100.4

Q ss_pred             CCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChh
Q 012930          280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKA  359 (453)
Q Consensus       280 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~  359 (453)
                      ++|++|++++|.+.+..+..+     ..+++|++|++++|.+++..+        ..+.   .+++|++|++++|+++. 
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~~--------~~~~---~l~~L~~L~L~~N~l~~-  255 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDL-----LRYSKLYRLGLGHNQIRMIEN--------GSLS---FLPTLRELHLDNNKLSR-  255 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSS-----TTCTTCSCCBCCSSCCCCCCT--------TGGG---GCTTCCEEECCSSCCCB-
T ss_pred             CCCCEEECCCCcCCccCHHHh-----cCCCCCCEEECCCCcCCcCCh--------hHhh---CCCCCCEEECCCCcCee-
Confidence            689999999999887544433     457899999999999987543        3455   67899999999999995 


Q ss_pred             hHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEE
Q 012930          360 DARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLS  439 (453)
Q Consensus       360 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~  439 (453)
                          +|..+..+++|+.|++++|+|++.+...+.+.  ........|+.|++++|.++..++  .+..+.. .+.|+.|+
T Consensus       256 ----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~N~~~~~~~--~~~~~~~-l~~L~~l~  326 (332)
T 2ft3_A          256 ----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV--GFGVKRAYYNGISLFNNPVPYWEV--QPATFRC-VTDRLAIQ  326 (332)
T ss_dssp             ----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS--SCCSSSCCBSEEECCSSSSCGGGS--CGGGGTT-BCCSTTEE
T ss_pred             ----cChhhhcCccCCEEECCCCCCCccChhHcccc--ccccccccccceEeecCccccccc--Ccccccc-cchhhhhh
Confidence                78889999999999999999998543333210  000113679999999999874322  2345555 46699999


Q ss_pred             CcCCC
Q 012930          440 IADNN  444 (453)
Q Consensus       440 Ls~N~  444 (453)
                      +++|.
T Consensus       327 l~~n~  331 (332)
T 2ft3_A          327 FGNYK  331 (332)
T ss_dssp             C----
T ss_pred             ccccc
Confidence            99884

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=1.7e-19  Score=183.02  Aligned_cols=57  Identities=19%  Similarity=0.177  Sum_probs=26.1

Q ss_pred             cceeccccccchHHH-hhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCC
Q 012930          167 ARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLS  229 (453)
Q Consensus       167 l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~  229 (453)
                      ++.|+++++.+..++ ..+..+++|+.|+|++|.+....+      +..+++|++|+|++|.|+
T Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~   93 (487)
T 3oja_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQ   93 (487)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEE
T ss_pred             ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCC
Confidence            444444444444332 234444555555555555432221      334455555555555444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.74  E-value=1e-19  Score=189.87  Aligned_cols=241  Identities=18%  Similarity=0.094  Sum_probs=185.8

Q ss_pred             cCCceeeeehhhh------c--cccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEE
Q 012930          151 CDYSKLSYHCQQF------G--HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLE  222 (453)
Q Consensus       151 ~~l~~l~l~~~~~------~--~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~  222 (453)
                      .+++.+.++...+      .  ..++.+++.++....++ .+ .+++|++|++++|......      .+..+++|++|+
T Consensus       285 ~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~  356 (606)
T 3vq2_A          285 ANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF------KKVALPSLSYLD  356 (606)
T ss_dssp             TTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC------CCCCCTTCCEEE
T ss_pred             CCCCEEEecCccchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch------hhccCCCCCEEE
Confidence            4556666555422      1  16889999999887666 45 8899999999999633222      145789999999


Q ss_pred             cCCCCCChhH--HHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHH
Q 012930          223 FLHCKLSPSF--VEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMV  300 (453)
Q Consensus       223 L~~n~l~~~~--~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l  300 (453)
                      +++|.++...  +..+..        +++|++|++++|.++.         ++..+..+++|++|++++|.+.+..+...
T Consensus       357 ls~n~l~~~~~~~~~~~~--------~~~L~~L~L~~n~l~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  419 (606)
T 3vq2_A          357 LSRNALSFSGCCSYSDLG--------TNSLRHLDLSFNGAII---------MSANFMGLEELQHLDFQHSTLKRVTEFSA  419 (606)
T ss_dssp             CCSSCEEEEEECCHHHHC--------CSCCCEEECCSCSEEE---------ECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred             CcCCccCCCcchhhhhcc--------CCcccEeECCCCcccc---------chhhccCCCCCCeeECCCCccCCccChhh
Confidence            9999987653  444443        5899999999999876         44667789999999999999877544111


Q ss_pred             HHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCC
Q 012930          301 FSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDIS  380 (453)
Q Consensus       301 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls  380 (453)
                          +..+++|++|++++|.+++..+        ..+.   .+++|++|++++|.+++.   .++..+..+++|+.|+++
T Consensus       420 ----~~~l~~L~~L~l~~n~l~~~~~--------~~~~---~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls  481 (606)
T 3vq2_A          420 ----FLSLEKLLYLDISYTNTKIDFD--------GIFL---GLTSLNTLKMAGNSFKDN---TLSNVFANTTNLTFLDLS  481 (606)
T ss_dssp             ----TTTCTTCCEEECTTSCCEECCT--------TTTT---TCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECT
T ss_pred             ----hhccccCCEEECcCCCCCccch--------hhhc---CCCCCCEEECCCCcCCCc---chHHhhccCCCCCEEECC
Confidence                2457999999999999986544        4444   778999999999998862   146678899999999999


Q ss_pred             CCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          381 DNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       381 ~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      +|.+++.     .|   ..+..+++|++|++++|+++..    .+..+..+ ++|++|++++|+|+.
T Consensus       482 ~n~l~~~-----~~---~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~l~~N~l~~  535 (606)
T 3vq2_A          482 KCQLEQI-----SW---GVFDTLHRLQLLNMSHNNLLFL----DSSHYNQL-YSLSTLDCSFNRIET  535 (606)
T ss_dssp             TSCCCEE-----CT---TTTTTCTTCCEEECCSSCCSCE----EGGGTTTC-TTCCEEECTTSCCCC
T ss_pred             CCcCCcc-----Ch---hhhcccccCCEEECCCCcCCCc----CHHHccCC-CcCCEEECCCCcCcc
Confidence            9999873     33   5578889999999999999885    35666664 569999999999984

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.74  E-value=2.9e-18  Score=163.45  Aligned_cols=60  Identities=28%  Similarity=0.434  Sum_probs=27.3

Q ss_pred             CCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          343 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       343 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      +++|++|++++|.+++     ++. +..+++|+.|++++|.+++      ++.    +..+++|++|++++|++++
T Consensus       150 l~~L~~L~l~~n~l~~-----~~~-l~~l~~L~~L~l~~n~l~~------~~~----l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          150 LTNLQYLSIGNAQVSD-----LTP-LANLSKLTTLKADDNKISD------ISP----LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             CTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCC------CGG----GGGCTTCCEEECTTSCCCB
T ss_pred             CCCccEEEccCCcCCC-----Chh-hcCCCCCCEEECCCCccCc------Chh----hcCCCCCCEEEccCCccCc
Confidence            3445555555555443     222 4444555555555555544      221    2333445555555555444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.73  E-value=5.1e-19  Score=167.21  Aligned_cols=210  Identities=17%  Similarity=0.096  Sum_probs=135.8

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.++++++.+..++..+.  ++++.|+|++|.+......    .+..+++|++|+|++|.|+.....          .
T Consensus        11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~----------~   74 (290)
T 1p9a_G           11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTKLQVD----------G   74 (290)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG----GGTTCTTCCEEECTTSCCCEEECC----------S
T ss_pred             CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHH----HhhcCCCCCEEECCCCccCcccCC----------C
Confidence            45666666666665554332  5778888888876543222    245677888888888877753321          1


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                      .+++|++|++++|.++.         ++..+..+++|++|++++|+++...+..+     ..+++|++|++++|.+++..
T Consensus        75 ~l~~L~~L~Ls~N~l~~---------l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-----~~l~~L~~L~L~~N~l~~~~  140 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQS---------LPLLGQTLPALTVLDVSFNRLTSLPLGAL-----RGLGELQELYLKGNELKTLP  140 (290)
T ss_dssp             CCTTCCEEECCSSCCSS---------CCCCTTTCTTCCEEECCSSCCCCCCSSTT-----TTCTTCCEEECTTSCCCCCC
T ss_pred             CCCcCCEEECCCCcCCc---------CchhhccCCCCCEEECCCCcCcccCHHHH-----cCCCCCCEEECCCCCCCccC
Confidence            15778888888888765         44456677888888888888775322222     44678888888888877532


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHH-HHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  404 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~  404 (453)
                      +        ..+   ..+++|+.|+|++|+|+.     ++. .+..+++|+.|+|++|+|+.      +|   ..+....
T Consensus       141 ~--------~~~---~~l~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~l~~------ip---~~~~~~~  195 (290)
T 1p9a_G          141 P--------GLL---TPTPKLEKLSLANNNLTE-----LPAGLLNGLENLDTLLLQENSLYT------IP---KGFFGSH  195 (290)
T ss_dssp             T--------TTT---TTCTTCCEEECTTSCCSC-----CCTTTTTTCTTCCEEECCSSCCCC------CC---TTTTTTC
T ss_pred             h--------hhc---ccccCCCEEECCCCcCCc-----cCHHHhcCcCCCCEEECCCCcCCc------cC---hhhcccc
Confidence            2        222   256778888888888775     343 45667888888888888875      55   4455566


Q ss_pred             CccEEEccCCCCChh-hHHHHHHHHhc
Q 012930          405 PLVELYLENCELSGR-GVSQLLDTLST  430 (453)
Q Consensus       405 ~L~~L~L~~n~l~~~-~~~~l~~~l~~  430 (453)
                      .|+.|+|++|.+... ....+...+..
T Consensus       196 ~L~~l~L~~Np~~C~c~~~~l~~wl~~  222 (290)
T 1p9a_G          196 LLPFAFLHGNPWLCNCEILYFRRWLQD  222 (290)
T ss_dssp             CCSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred             cCCeEEeCCCCccCcCccHHHHHHHHh
Confidence            788888888876532 22334445544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.73  E-value=2.6e-18  Score=175.80  Aligned_cols=228  Identities=18%  Similarity=0.178  Sum_probs=164.9

Q ss_pred             ccceeccccccch-HHHhhh-----hcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHH
Q 012930          166 YARCLRLQNALCV-EETCQL-----LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRS  239 (453)
Q Consensus       166 ~l~~l~L~~~~~~-~~~~~l-----~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  239 (453)
                      .++.++++++... .++..+     ..+++|+.+++++|.+. .....+..++. ..+|++|++++|.+......     
T Consensus       248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~-~p~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~-----  320 (520)
T 2z7x_B          248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFS-NMNIKNFTVSGTRMVHMLCP-----  320 (520)
T ss_dssp             SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCC-SCTHHHHHHHH-TCCCSEEEEESSCCCCCCCC-----
T ss_pred             cccEEEeecccccCccccchhhcccccCceeEecccccccee-cchhhhhcccc-cCceeEEEcCCCccccccch-----
Confidence            5777777777665 455555     66788888888887761 11111222222 24788999998877643210     


Q ss_pred             hhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCCh--hHHHHHHHHHhhCCCCCCEEEcC
Q 012930          240 LCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR--DFGRMVFSSLLEASSSLSILDLS  317 (453)
Q Consensus       240 L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~--~~~~~l~~~L~~~~~~L~~L~Ls  317 (453)
                           ..+++|++|++++|.+++        ..+..+..+++|++|++++|++.+  ..+..+     ..+++|++|+++
T Consensus       321 -----~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-----~~l~~L~~L~Ls  382 (520)
T 2z7x_B          321 -----SKISPFLHLDFSNNLLTD--------TVFENCGHLTELETLILQMNQLKELSKIAEMT-----TQMKSLQQLDIS  382 (520)
T ss_dssp             -----SSCCCCCEEECCSSCCCT--------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH-----TTCTTCCEEECC
T ss_pred             -----hhCCcccEEEeECCccCh--------hhhhhhccCCCCCEEEccCCccCccccchHHH-----hhCCCCCEEECC
Confidence                 116889999999999988        566777899999999999999986  233333     457999999999


Q ss_pred             CCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHH
Q 012930          318 GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFV  397 (453)
Q Consensus       318 ~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~  397 (453)
                      +|.+++..+        .  ..+..+++|++|++++|++++.    ++..+.  ++|+.|++++|+|+.      +|   
T Consensus       383 ~N~l~~~l~--------~--~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~--~~L~~L~Ls~N~l~~------ip---  437 (520)
T 2z7x_B          383 QNSVSYDEK--------K--GDCSWTKSLLSLNMSSNILTDT----IFRCLP--PRIKVLDLHSNKIKS------IP---  437 (520)
T ss_dssp             SSCCBCCGG--------G--CSCCCCTTCCEEECCSSCCCGG----GGGSCC--TTCCEEECCSSCCCC------CC---
T ss_pred             CCcCCcccc--------c--chhccCccCCEEECcCCCCCcc----hhhhhc--ccCCEEECCCCcccc------cc---
Confidence            999987433        2  1233678999999999999863    443332  789999999999986      66   


Q ss_pred             hhcCCCCCccEEEccCCCCChhhHHHHHHH-HhcCCCCCcEEECcCCCCCccc
Q 012930          398 QASERCNPLVELYLENCELSGRGVSQLLDT-LSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       398 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                      ..+..+++|++|++++|+|+.     ++.. +.. .++|++|++++|++....
T Consensus       438 ~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~-l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          438 KQVVKLEALQELNVASNQLKS-----VPDGIFDR-LTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             GGGGGCTTCCEEECCSSCCCC-----CCTTTTTT-CTTCCEEECCSSCBCCCH
T ss_pred             hhhhcCCCCCEEECCCCcCCc-----cCHHHhcc-CCcccEEECcCCCCcccC
Confidence            445577999999999999986     3433 555 356999999999987643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.73  E-value=2.8e-17  Score=165.95  Aligned_cols=107  Identities=19%  Similarity=0.205  Sum_probs=49.1

Q ss_pred             hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCC
Q 012930          184 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN  263 (453)
Q Consensus       184 l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~  263 (453)
                      +..+++|+.|++++|.+....      .+..+++|++|++++|.+++..+  +..        +++|+.|++++|.++..
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~~~~--~~~--------l~~L~~L~l~~n~l~~~  236 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSDIS------VLAKLTNLESLIATNNQISDITP--LGI--------LTNLDELSLNGNQLKDI  236 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCSSCCCCCGG--GGG--------CTTCCEEECCSSCCCCC
T ss_pred             hccCCCCCEEECcCCcCCCCh------hhccCCCCCEEEecCCccccccc--ccc--------cCCCCEEECCCCCcccc
Confidence            334455555555555543221      13345555555555555544322  110        34455555555555441


Q ss_pred             CchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930          264 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  323 (453)
Q Consensus       264 ~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  323 (453)
                                ..+..+++|++|++++|.+.+..+       +..+++|+.|++++|.+++
T Consensus       237 ----------~~l~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~  279 (466)
T 1o6v_A          237 ----------GTLASLTNLTDLDLANNQISNLAP-------LSGLTKLTELKLGANQISN  279 (466)
T ss_dssp             ----------GGGGGCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCCC
T ss_pred             ----------hhhhcCCCCCEEECCCCccccchh-------hhcCCCCCEEECCCCccCc
Confidence                      123444555555555555544221       1234455555555555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.73  E-value=3.4e-18  Score=176.15  Aligned_cols=92  Identities=28%  Similarity=0.285  Sum_probs=52.4

Q ss_pred             CCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChh
Q 012930          308 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD  387 (453)
Q Consensus       308 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  387 (453)
                      +++|++|++++|.+++..+        .....+..+++|++|++++|++++..  ..+..+..+++|+.|++++|+++. 
T Consensus       333 l~~L~~L~Ls~N~l~~~~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~-  401 (549)
T 2z81_A          333 LKSLEFLDLSENLMVEEYL--------KNSACKGAWPSLQTLVLSQNHLRSMQ--KTGEILLTLKNLTSLDISRNTFHP-  401 (549)
T ss_dssp             CTTCCEEECCSSCCCHHHH--------HHHTCTTSSTTCCEEECTTSCCCCHH--HHHHHGGGCTTCCEEECTTCCCCC-
T ss_pred             CccccEEEccCCccccccc--------cchhhhhccccCcEEEccCCcccccc--cchhhhhcCCCCCEEECCCCCCcc-
Confidence            4666666666666664221        22222235566777777777776511  112346667777777777777664 


Q ss_pred             HHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          388 GIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       388 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                           +|   ..+..+++|++|++++|.++.
T Consensus       402 -----lp---~~~~~~~~L~~L~Ls~N~l~~  424 (549)
T 2z81_A          402 -----MP---DSCQWPEKMRFLNLSSTGIRV  424 (549)
T ss_dssp             -----CC---SCCCCCTTCCEEECTTSCCSC
T ss_pred             -----CC---hhhcccccccEEECCCCCccc
Confidence                 44   345555666666666666554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.73  E-value=4.3e-17  Score=169.42  Aligned_cols=224  Identities=16%  Similarity=0.148  Sum_probs=150.4

Q ss_pred             hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccC------
Q 012930          184 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDI------  257 (453)
Q Consensus       184 l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~------  257 (453)
                      +..+++|++|++++|.+....   ...+...+++|++|++++| +++.++..+...       +++|++|++.+      
T Consensus       285 ~~~~~~L~~L~L~~~~l~~~~---l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~-------~~~L~~L~L~~~~~~g~  353 (594)
T 2p1m_B          285 YSVCSRLTTLNLSYATVQSYD---LVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST-------CKDLRELRVFPSEPFVM  353 (594)
T ss_dssp             HHHHTTCCEEECTTCCCCHHH---HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH-------CTTCCEEEEECSCTTCS
T ss_pred             HHhhCCCCEEEccCCCCCHHH---HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh-------CCCCCEEEEecCccccc
Confidence            345678888888888854322   3344567888899988888 666666666654       57788888833      


Q ss_pred             ---CCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcC--C----CCCCCccccc
Q 012930          258 ---SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS--G----NSIGGWLSKY  328 (453)
Q Consensus       258 ---n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls--~----n~l~~~~~~~  328 (453)
                         +.+++       ..+......+++|++|.+..|.+++..+..++..    +++|+.|+++  +    +.+++...  
T Consensus       354 ~~~~~l~~-------~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~----~~~L~~L~L~~~~~~~~~~l~~~~~--  420 (594)
T 2p1m_B          354 EPNVALTE-------QGLVSVSMGCPKLESVLYFCRQMTNAALITIARN----RPNMTRFRLCIIEPKAPDYLTLEPL--  420 (594)
T ss_dssp             SCSSCCCH-------HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH----CTTCCEEEEEESSTTCCCTTTCCCT--
T ss_pred             ccCCCCCH-------HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh----CCCcceeEeecccCCCcccccCCch--
Confidence               34444       1233333457888888888888888777666543    6889999988  3    44552100  


Q ss_pred             CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccE
Q 012930          329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE  408 (453)
Q Consensus       329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~  408 (453)
                       ...++..+.   .+++|+.|++++ .+++.++..+..   .+++|+.|+|++|.+++.|+..++.       .+++|++
T Consensus       421 -~~~~~~l~~---~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~~-------~~~~L~~  485 (594)
T 2p1m_B          421 -DIGFGAIVE---HCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLS-------GCDSLRK  485 (594)
T ss_dssp             -HHHHHHHHH---HCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHHH-------HCTTCCE
T ss_pred             -hhHHHHHHh---hCCCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHHh-------cCCCcCE
Confidence             011222333   567888888877 788765444432   4778888999888888887666642       2478888


Q ss_pred             EEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          409 LYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       409 L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      |++++|.+++.+...+...+.    +|++|++++|.+++.+.
T Consensus       486 L~L~~n~~~~~~~~~~~~~l~----~L~~L~l~~~~~~~~~~  523 (594)
T 2p1m_B          486 LEIRDCPFGDKALLANASKLE----TMRSLWMSSCSVSFGAC  523 (594)
T ss_dssp             EEEESCSCCHHHHHHTGGGGG----GSSEEEEESSCCBHHHH
T ss_pred             EECcCCCCcHHHHHHHHHhCC----CCCEEeeeCCCCCHHHH
Confidence            999998887776555444443    38889998888866553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.73  E-value=4e-19  Score=166.68  Aligned_cols=220  Identities=15%  Similarity=0.130  Sum_probs=163.8

Q ss_pred             cccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcc
Q 012930          165 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  243 (453)
Q Consensus       165 ~~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~  243 (453)
                      ..++.++++++....++. .+..+++|++|++++|.+......    .+..+++|++|+|++|.++...+..+..     
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----   98 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSG-----   98 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTT-----
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccChhhhcC-----
Confidence            358888999888776655 567789999999999986644322    2567899999999999998776555543     


Q ss_pred             ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChh-HHHHHHHHHhhCCCCCCEEEcCCCCCC
Q 012930          244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD-FGRMVFSSLLEASSSLSILDLSGNSIG  322 (453)
Q Consensus       244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~L~~~~~~L~~L~Ls~n~l~  322 (453)
                         +.+|++|++++|.+...        ....+..+++|++|++++|.+.+. .+..+     ..+++|++|++++|.++
T Consensus        99 ---l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~-----~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A           99 ---LSSLQKLVAVETNLASL--------ENFPIGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             ---CTTCCEEECTTSCCCCS--------TTCCCTTCTTCCEEECCSSCCCCCCCCGGG-----GGCTTCCEEECCSSCCC
T ss_pred             ---CccccEEECCCCCcccc--------CchhcccCCCCCEEECcCCccceecCchhh-----ccCCCCCEEECCCCCCC
Confidence               68999999999999872        223477899999999999998762 24333     44799999999999998


Q ss_pred             CcccccCcCchHHhhcCCCCCCccc-EEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcC
Q 012930          323 GWLSKYDRSGPLFSLGAGKSLQSLR-LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE  401 (453)
Q Consensus       323 ~~~~~~~~~~l~~~l~~~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~  401 (453)
                      +..+        ..+..+..++.|. .|++++|.++.     ++.......+|+.|++++|.++.      +|.  ..+.
T Consensus       163 ~~~~--------~~~~~l~~L~~l~l~L~ls~n~l~~-----~~~~~~~~~~L~~L~L~~n~l~~------~~~--~~~~  221 (276)
T 2z62_A          163 SIYC--------TDLRVLHQMPLLNLSLDLSLNPMNF-----IQPGAFKEIRLKELALDTNQLKS------VPD--GIFD  221 (276)
T ss_dssp             EECG--------GGGHHHHTCTTCCEEEECCSSCCCE-----ECTTSSCSCCEEEEECCSSCCSC------CCT--TTTT
T ss_pred             cCCH--------HHhhhhhhccccceeeecCCCcccc-----cCccccCCCcccEEECCCCceee------cCH--hHhc
Confidence            6433        3344322444454 89999999996     44444455689999999999987      442  4467


Q ss_pred             CCCCccEEEccCCCCChhh--HHHHHHHHhc
Q 012930          402 RCNPLVELYLENCELSGRG--VSQLLDTLST  430 (453)
Q Consensus       402 ~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~  430 (453)
                      .+++|++|++++|+++...  ...+...+..
T Consensus       222 ~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~  252 (276)
T 2z62_A          222 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  252 (276)
T ss_dssp             TCCSCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred             ccccccEEEccCCcccccCCchHHHHHHHHh
Confidence            7899999999999988643  2334444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=2.7e-19  Score=181.50  Aligned_cols=212  Identities=17%  Similarity=0.096  Sum_probs=167.8

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.|++++|.+...+. +..+++|+.|+|++|.+....         ..++|++|++++|.++...+..          
T Consensus        59 ~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---------~~~~L~~L~L~~N~l~~~~~~~----------  118 (487)
T 3oja_A           59 KLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---------VGPSIETLHAANNNISRVSCSR----------  118 (487)
T ss_dssp             TCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---------ECTTCCEEECCSSCCCCEEECC----------
T ss_pred             CCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---------CCCCcCEEECcCCcCCCCCccc----------
Confidence            58889999888765444 778899999999999965432         3489999999999998754322          


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                       +++|+.|++++|.++.        ..+..+..+++|++|+|++|.+++..+..+.    ..+++|++|+|++|.+++. 
T Consensus       119 -l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----~~l~~L~~L~Ls~N~l~~~-  184 (487)
T 3oja_A          119 -GQGKKNIYLANNKITM--------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----ASSDTLEHLNLQYNFIYDV-  184 (487)
T ss_dssp             -CSSCEEEECCSSCCCS--------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGG----GGTTTCCEEECTTSCCCEE-
T ss_pred             -cCCCCEEECCCCCCCC--------CCchhhcCCCCCCEEECCCCCCCCcChHHHh----hhCCcccEEecCCCccccc-
Confidence             4789999999999998        4556778899999999999999986665542    2468999999999999863 


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  405 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~  405 (453)
                                  .....+++|++|+|++|.+++     ++..+..+++|+.|+|++|.|++      +|   ..+..+++
T Consensus       185 ------------~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~------lp---~~l~~l~~  238 (487)
T 3oja_A          185 ------------KGQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL------IE---KALRFSQN  238 (487)
T ss_dssp             ------------ECCCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE------EC---TTCCCCTT
T ss_pred             ------------cccccCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCCcCcc------cc---hhhccCCC
Confidence                        112257899999999999997     56668899999999999999997      66   55788899


Q ss_pred             ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECc
Q 012930          406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIA  441 (453)
Q Consensus       406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls  441 (453)
                      |+.|++++|.++...   ++..+.. .+.|+.++++
T Consensus       239 L~~L~l~~N~l~c~~---~~~~~~~-l~~L~~l~~~  270 (487)
T 3oja_A          239 LEHFDLRGNGFHCGT---LRDFFSK-NQRVQTVAKQ  270 (487)
T ss_dssp             CCEEECTTCCBCHHH---HHHHHTT-CHHHHHHHHH
T ss_pred             CCEEEcCCCCCcCcc---hHHHHHh-CCCCcEEecc
Confidence            999999999998542   4444544 2336666664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.72  E-value=1.3e-18  Score=179.99  Aligned_cols=127  Identities=17%  Similarity=0.056  Sum_probs=97.2

Q ss_pred             cccceeccccccchHHH-hhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcc
Q 012930          165 HYARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  243 (453)
Q Consensus       165 ~~l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~  243 (453)
                      ..++.++++++....++ ..+..+++|++|+|++|.+......    .+.++++|++|+|++|.++.....         
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~lp~~---------  118 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQNISCC---------  118 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCCEECSC---------
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCCccCcc---------
Confidence            47899999999888765 4677889999999999997654332    256789999999999999843222         


Q ss_pred             ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCC--CEEEcCCCCC
Q 012930          244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSL--SILDLSGNSI  321 (453)
Q Consensus       244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L--~~L~Ls~n~l  321 (453)
                        .+.+|++|++++|.++...       .+..++++++|++|++++|.+.+.....        +++|  ++|++++|.+
T Consensus       119 --~l~~L~~L~Ls~N~l~~l~-------~p~~~~~l~~L~~L~L~~n~l~~~~~~~--------l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          119 --PMASLRHLDLSFNDFDVLP-------VCKEFGNLTKLTFLGLSAAKFRQLDLLP--------VAHLHLSCILLDLVSY  181 (562)
T ss_dssp             --CCTTCSEEECCSSCCSBCC-------CCGGGGGCTTCCEEEEECSBCCTTTTGG--------GTTSCEEEEEEEESSC
T ss_pred             --ccccCCEEECCCCCccccC-------chHhhcccCcccEEecCCCccccCchhh--------hhhceeeEEEeecccc
Confidence              1689999999999988622       2357889999999999999997633322        2444  7777777766

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.72  E-value=2.9e-18  Score=181.31  Aligned_cols=186  Identities=15%  Similarity=0.078  Sum_probs=113.8

Q ss_pred             ccceeccccccchHH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      .++.++++++....+ +..+.++++|++|+|++|.+......    .+.++++|++|++++|.++...+..+..      
T Consensus        50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~------  119 (680)
T 1ziw_A           50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK----TFAFCTNLTELHLMSNSIQKIKNNPFVK------  119 (680)
T ss_dssp             TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCSCTTTT------
T ss_pred             cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh----hhccCCCCCEEECCCCccCccChhHccc------
Confidence            577777777766554 34456778888888888875533221    2456778888888888776554444433      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                        +.+|++|++++|.++.        ..+..+.++++|++|++++|.+++..+..+..   ..+++|++|++++|.+++.
T Consensus       120 --l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---~~~~~L~~L~L~~n~l~~~  186 (680)
T 1ziw_A          120 --QKNLITLDLSHNGLSS--------TKLGTQVQLENLQELLLSNNKIQALKSEELDI---FANSSLKKLELSSNQIKEF  186 (680)
T ss_dssp             --CTTCCEEECCSSCCSC--------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG---GTTCEESEEECTTCCCCCB
T ss_pred             --cCCCCEEECCCCcccc--------cCchhhcccccCCEEEccCCcccccCHHHhhc---cccccccEEECCCCccccc
Confidence              5778888888888776        23344567888888888888887654443311   1347788888888888764


Q ss_pred             ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930          325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  386 (453)
                      .+        ..+.   .+.+|+.|++.+|.+.......++..+ ..++|+.|++++|.+++
T Consensus       187 ~~--------~~~~---~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~  236 (680)
T 1ziw_A          187 SP--------GCFH---AIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLST  236 (680)
T ss_dssp             CT--------TGGG---GSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCE
T ss_pred             Ch--------hhhh---hhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccc
Confidence            44        3333   344555555555555544333333332 22445555555554443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.72  E-value=6.5e-18  Score=178.63  Aligned_cols=239  Identities=21%  Similarity=0.119  Sum_probs=165.1

Q ss_pred             cccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcc
Q 012930          165 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  243 (453)
Q Consensus       165 ~~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~  243 (453)
                      ..++.++++++.+..++. .+.++++|++|+|++|.+......    .+.++++|++|+|++|.++......+..     
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~-----   95 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLSDKTFAF-----   95 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCCTTTTTT-----
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccChhhhcc-----
Confidence            467888888877766554 466778888888888876544322    2456788888888888877544434433     


Q ss_pred             ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930          244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  323 (453)
Q Consensus       244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  323 (453)
                         +.+|++|++++|.++.        ..+..++++++|++|+|++|.+.+..+..+     ..+++|++|++++|.+++
T Consensus        96 ---l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A           96 ---CTNLTELHLMSNSIQK--------IKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-----VQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             ---CTTCSEEECCSSCCCC--------CCSCTTTTCTTCCEEECCSSCCSCCCCCSS-----SCCTTCCEEECCSSCCCC
T ss_pred             ---CCCCCEEECCCCccCc--------cChhHccccCCCCEEECCCCcccccCchhh-----cccccCCEEEccCCcccc
Confidence               5788888888888776        223456778888888888888776444332     346788888888888876


Q ss_pred             cccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCC
Q 012930          324 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC  403 (453)
Q Consensus       324 ~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~  403 (453)
                      ..+        ..+... .+++|++|++++|.+++    ..+..+..+++|+.|++++|.+++.....++..    + ..
T Consensus       160 ~~~--------~~~~~~-~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~----l-~~  221 (680)
T 1ziw_A          160 LKS--------EELDIF-ANSSLKKLELSSNQIKE----FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE----L-AN  221 (680)
T ss_dssp             BCH--------HHHGGG-TTCEESEEECTTCCCCC----BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH----H-TT
T ss_pred             cCH--------HHhhcc-ccccccEEECCCCcccc----cChhhhhhhhhhhhhhccccccChhhHHHHHHH----h-hh
Confidence            433        333322 45788888888888876    345567778888888888888877655555432    2 23


Q ss_pred             CCccEEEccCCCCChhhHHHHHHHHhcCC-CCCcEEECcCCCCCcccc
Q 012930          404 NPLVELYLENCELSGRGVSQLLDTLSTLR-RPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       404 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~~L~~L~Ls~N~l~~~~~  450 (453)
                      ++|++|++++|.++...    +..+..+. ++|++|++++|.+++.++
T Consensus       222 ~~L~~L~L~~n~l~~~~----~~~~~~l~~~~L~~L~Ls~n~l~~~~~  265 (680)
T 1ziw_A          222 TSIRNLSLSNSQLSTTS----NTTFLGLKWTNLTMLDLSYNNLNVVGN  265 (680)
T ss_dssp             SCCCEEECTTSCCCEEC----TTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred             ccccEEEccCCcccccC----hhHhhccCcCCCCEEECCCCCcCccCc
Confidence            78999999999887752    23333321 349999999999887554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.72  E-value=9.1e-19  Score=163.75  Aligned_cols=202  Identities=16%  Similarity=0.155  Sum_probs=137.6

Q ss_pred             cceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccC
Q 012930          167 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR  246 (453)
Q Consensus       167 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~  246 (453)
                      .+.++++++.+..++..+.  .++++|++++|.+......    .+..+++|++|+|++|.++......+..        
T Consensus        18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~i~~~~~~~--------   83 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSK----AFHRLTKLRLLYLNDNKLQTLPAGIFKE--------   83 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTT----SSSSCTTCCEEECCSSCCSCCCTTTTSS--------
T ss_pred             CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHH----HhcCCCCCCEEECCCCccCeeChhhhcC--------
Confidence            4556666666655554332  5788888888886543221    2457788888888888877543333222        


Q ss_pred             CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930          247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  326 (453)
Q Consensus       247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  326 (453)
                      +++|++|++++|.+..        ..+..+..+++|++|++++|.+.+..+..     +..+++|++|++++|.+++..+
T Consensus        84 l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~  150 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQA--------LPIGVFDQLVNLAELRLDRNQLKSLPPRV-----FDSLTKLTYLSLGYNELQSLPK  150 (270)
T ss_dssp             CTTCCEEECCSSCCCC--------CCTTTTTTCSSCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCCCEEECCCCcCCc--------CCHhHcccccCCCEEECCCCccCeeCHHH-----hCcCcCCCEEECCCCcCCccCH
Confidence            5778888888888876        22345567888888888888887643332     2446888888888888876322


Q ss_pred             ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCc
Q 012930          327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL  406 (453)
Q Consensus       327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L  406 (453)
                              ..+.   .+++|++|++++|.++.    ..+..+..+++|+.|++++|.|+.      +|.  ..+..+++|
T Consensus       151 --------~~~~---~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L  207 (270)
T 2o6q_A          151 --------GVFD---KLTSLKELRLYNNQLKR----VPEGAFDKLTELKTLKLDNNQLKR------VPE--GAFDSLEKL  207 (270)
T ss_dssp             --------TTTT---TCTTCCEEECCSSCCSC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTC
T ss_pred             --------hHcc---CCcccceeEecCCcCcE----eChhHhccCCCcCEEECCCCcCCc------CCH--HHhccccCC
Confidence                    2233   67888888888888876    223356778888888888888876      332  346667888


Q ss_pred             cEEEccCCCCCh
Q 012930          407 VELYLENCELSG  418 (453)
Q Consensus       407 ~~L~L~~n~l~~  418 (453)
                      +.|++++|.+..
T Consensus       208 ~~L~l~~N~~~c  219 (270)
T 2o6q_A          208 KMLQLQENPWDC  219 (270)
T ss_dssp             CEEECCSSCBCC
T ss_pred             CEEEecCCCeeC
Confidence            888888887654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.72  E-value=1.8e-18  Score=161.77  Aligned_cols=204  Identities=17%  Similarity=0.150  Sum_probs=155.4

Q ss_pred             CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchh
Q 012930          188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  267 (453)
Q Consensus       188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~  267 (453)
                      ...+.++++++.++....       .-.+++++|+|++|.++...+..+..        +++|++|++++|.++.     
T Consensus        16 ~~~~~l~~~~~~l~~ip~-------~~~~~l~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~-----   75 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPS-------NIPADTKKLDLQSNKLSSLPSKAFHR--------LTKLRLLYLNDNKLQT-----   75 (270)
T ss_dssp             TTTTEEECTTSCCSSCCS-------CCCTTCSEEECCSSCCSCCCTTSSSS--------CTTCCEEECCSSCCSC-----
T ss_pred             CCCCEEEccCCCCCccCC-------CCCCCCCEEECcCCCCCeeCHHHhcC--------CCCCCEEECCCCccCe-----
Confidence            457789999988664321       12257999999999998655444433        5899999999999987     


Q ss_pred             hHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCccc
Q 012930          268 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR  347 (453)
Q Consensus       268 i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~  347 (453)
                         .....+..+++|++|++++|.+....+..     +..+++|++|++++|.+++..+        ..+.   .+++|+
T Consensus        76 ---i~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~--------~~~~---~l~~L~  136 (270)
T 2o6q_A           76 ---LPAGIFKELKNLETLWVTDNKLQALPIGV-----FDQLVNLAELRLDRNQLKSLPP--------RVFD---SLTKLT  136 (270)
T ss_dssp             ---CCTTTTSSCTTCCEEECCSSCCCCCCTTT-----TTTCSSCCEEECCSSCCCCCCT--------TTTT---TCTTCC
T ss_pred             ---eChhhhcCCCCCCEEECCCCcCCcCCHhH-----cccccCCCEEECCCCccCeeCH--------HHhC---cCcCCC
Confidence               23344578999999999999998733322     3457899999999999987433        3333   779999


Q ss_pred             EEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHH
Q 012930          348 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT  427 (453)
Q Consensus       348 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  427 (453)
                      +|+|++|.++..    .+..+..+++|+.|++++|.++.      ++.  ..+..+++|++|++++|+|+...    ...
T Consensus       137 ~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~~--~~~~~l~~L~~L~L~~N~l~~~~----~~~  200 (270)
T 2o6q_A          137 YLSLGYNELQSL----PKGVFDKLTSLKELRLYNNQLKR------VPE--GAFDKLTELKTLKLDNNQLKRVP----EGA  200 (270)
T ss_dssp             EEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSSCCSCCC----TTT
T ss_pred             EEECCCCcCCcc----CHhHccCCcccceeEecCCcCcE------eCh--hHhccCCCcCEEECCCCcCCcCC----HHH
Confidence            999999999862    23357889999999999999987      432  44777899999999999998742    233


Q ss_pred             HhcCCCCCcEEECcCCCCCc
Q 012930          428 LSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       428 l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      +.. .++|+.|++++|.+..
T Consensus       201 ~~~-l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          201 FDS-LEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTT-CTTCCEEECCSSCBCC
T ss_pred             hcc-ccCCCEEEecCCCeeC
Confidence            555 3569999999999754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.72  E-value=2.6e-17  Score=166.12  Aligned_cols=212  Identities=18%  Similarity=0.179  Sum_probs=169.7

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.++++++....+. .+..+++|++|++++|.+.....      ...+++|++|++++|.+++..  .+.    .   
T Consensus       178 ~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~--~l~----~---  241 (466)
T 1o6v_A          178 TLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDIG--TLA----S---  241 (466)
T ss_dssp             TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCG--GGG----G---
T ss_pred             CCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc------ccccCCCCEEECCCCCcccch--hhh----c---
Confidence            5788888888776543 47788999999999999665432      457899999999999988642  222    2   


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                       +++|+.|++++|.+..        ..+  +..+++|++|++++|.+.+..+       +..+++|+.|++++|.+++..
T Consensus       242 -l~~L~~L~l~~n~l~~--------~~~--~~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~L~~n~l~~~~  303 (466)
T 1o6v_A          242 -LTNLTDLDLANNQISN--------LAP--LSGLTKLTELKLGANQISNISP-------LAGLTALTNLELNENQLEDIS  303 (466)
T ss_dssp             -CTTCSEEECCSSCCCC--------CGG--GTTCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCSCCG
T ss_pred             -CCCCCEEECCCCcccc--------chh--hhcCCCCCEEECCCCccCcccc-------ccCCCccCeEEcCCCcccCch
Confidence             5899999999999987        111  7789999999999999987433       245799999999999998631


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  405 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~  405 (453)
                               . ++   .+++|++|++++|++++.    .+  +..+++|+.|++++|.+++      ++    .+..+++
T Consensus       304 ---------~-~~---~l~~L~~L~L~~n~l~~~----~~--~~~l~~L~~L~l~~n~l~~------~~----~l~~l~~  354 (466)
T 1o6v_A          304 ---------P-IS---NLKNLTYLTLYFNNISDI----SP--VSSLTKLQRLFFYNNKVSD------VS----SLANLTN  354 (466)
T ss_dssp             ---------G-GG---GCTTCSEEECCSSCCSCC----GG--GGGCTTCCEEECCSSCCCC------CG----GGTTCTT
T ss_pred             ---------h-hc---CCCCCCEEECcCCcCCCc----hh--hccCccCCEeECCCCccCC------ch----hhccCCC
Confidence                     2 34   678999999999999973    22  7789999999999999987      32    3677899


Q ss_pred             ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      |+.|++++|++++..    +  +..+ +.|+.|++++|.+++
T Consensus       355 L~~L~l~~n~l~~~~----~--~~~l-~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          355 INWLSAGHNQISDLT----P--LANL-TRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCEEECCSSCCCBCG----G--GTTC-TTCCEEECCCEEEEC
T ss_pred             CCEEeCCCCccCccc----h--hhcC-CCCCEEeccCCcccC
Confidence            999999999998852    2  5664 559999999998876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.72  E-value=1.1e-17  Score=159.39  Aligned_cols=190  Identities=17%  Similarity=0.209  Sum_probs=153.1

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.+++.++....++ .+..+++|+.|++++|.+.....      +..+++|++|++++|.+++..  .+.    .   
T Consensus        42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~~~--~~~----~---  105 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKNVS--AIA----G---  105 (308)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSCCG--GGT----T---
T ss_pred             CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCCch--hhc----C---
Confidence            5777788877766554 57788999999999999765432      568899999999999998642  222    2   


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                       +++|++|++++|.++.         ++ .+..+++|++|++++|.+.+..+       +..+++|+.|++++|.+++. 
T Consensus       106 -l~~L~~L~l~~n~l~~---------~~-~l~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n~l~~~-  166 (308)
T 1h6u_A          106 -LQSIKTLDLTSTQITD---------VT-PLAGLSNLQVLYLDLNQITNISP-------LAGLTNLQYLSIGNAQVSDL-  166 (308)
T ss_dssp             -CTTCCEEECTTSCCCC---------CG-GGTTCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCC-
T ss_pred             -CCCCCEEECCCCCCCC---------ch-hhcCCCCCCEEECCCCccCcCcc-------ccCCCCccEEEccCCcCCCC-
Confidence             5899999999999987         22 27889999999999999987433       34579999999999999862 


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  405 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~  405 (453)
                              +. +.   .+++|++|++++|++++     ++. +..+++|+.|++++|++++      ++    .+..+++
T Consensus       167 --------~~-l~---~l~~L~~L~l~~n~l~~-----~~~-l~~l~~L~~L~L~~N~l~~------~~----~l~~l~~  218 (308)
T 1h6u_A          167 --------TP-LA---NLSKLTTLKADDNKISD-----ISP-LASLPNLIEVHLKNNQISD------VS----PLANTSN  218 (308)
T ss_dssp             --------GG-GT---TCTTCCEEECCSSCCCC-----CGG-GGGCTTCCEEECTTSCCCB------CG----GGTTCTT
T ss_pred             --------hh-hc---CCCCCCEEECCCCccCc-----Chh-hcCCCCCCEEEccCCccCc------cc----cccCCCC
Confidence                    22 34   77899999999999987     333 7899999999999999998      43    2677899


Q ss_pred             ccEEEccCCCCCh
Q 012930          406 LVELYLENCELSG  418 (453)
Q Consensus       406 L~~L~L~~n~l~~  418 (453)
                      |++|++++|.++.
T Consensus       219 L~~L~l~~N~i~~  231 (308)
T 1h6u_A          219 LFIVTLTNQTITN  231 (308)
T ss_dssp             CCEEEEEEEEEEC
T ss_pred             CCEEEccCCeeec
Confidence            9999999999876

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.71  E-value=1.1e-17  Score=168.11  Aligned_cols=184  Identities=18%  Similarity=0.097  Sum_probs=100.7

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.++++++.+..++  +..+++|++|++++|.+... .      +..+++|++|++++|.+++..   +.    .   
T Consensus        65 ~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~l~---~~----~---  125 (457)
T 3bz5_A           65 GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTKLD---VS----Q---  125 (457)
T ss_dssp             TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSCCC---CT----T---
T ss_pred             CCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCeec---CC----C---
Confidence            4555555555554432  44556666666666654432 0      345556666666666555421   11    1   


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                       +++|++|++++|.++..           .++.+++|++|++++|...+...       +..+++|++|++++|.+++  
T Consensus       126 -l~~L~~L~l~~N~l~~l-----------~l~~l~~L~~L~l~~n~~~~~~~-------~~~l~~L~~L~ls~n~l~~--  184 (457)
T 3bz5_A          126 -NPLLTYLNCARNTLTEI-----------DVSHNTQLTELDCHLNKKITKLD-------VTPQTQLTTLDCSFNKITE--  184 (457)
T ss_dssp             -CTTCCEEECTTSCCSCC-----------CCTTCTTCCEEECTTCSCCCCCC-------CTTCTTCCEEECCSSCCCC--
T ss_pred             -CCcCCEEECCCCcccee-----------ccccCCcCCEEECCCCCcccccc-------cccCCcCCEEECCCCccce--
Confidence             35566666666665551           13455666666666663222221       1234666666666666654  


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  405 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~  405 (453)
                             ++  ++   .+++|+.|++++|++++.       .+..+++|+.|++++|++++      +|     +..+++
T Consensus       185 -------l~--l~---~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~------ip-----~~~l~~  234 (457)
T 3bz5_A          185 -------LD--VS---QNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE------ID-----VTPLTQ  234 (457)
T ss_dssp             -------CC--CT---TCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSC------CC-----CTTCTT
T ss_pred             -------ec--cc---cCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccc------cC-----ccccCC
Confidence                   11  22   456666777777766652       25566667777777776665      33     445566


Q ss_pred             ccEEEccCCCCChh
Q 012930          406 LVELYLENCELSGR  419 (453)
Q Consensus       406 L~~L~L~~n~l~~~  419 (453)
                      |++|++++|+++..
T Consensus       235 L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          235 LTYFDCSVNPLTEL  248 (457)
T ss_dssp             CSEEECCSSCCSCC
T ss_pred             CCEEEeeCCcCCCc
Confidence            77777777766653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.71  E-value=4.1e-19  Score=183.78  Aligned_cols=229  Identities=18%  Similarity=0.157  Sum_probs=160.9

Q ss_pred             cceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhH--HHHHHHHhhccc
Q 012930          167 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSKR  244 (453)
Q Consensus       167 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~--~~~l~~~L~~~~  244 (453)
                      ++.+++.++....++.  ..+++|+.|++++|.......      ...+++|++|++++|.++...  +..+..      
T Consensus       306 L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~------  371 (570)
T 2z63_A          306 WQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQSDFG------  371 (570)
T ss_dssp             CSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCC------CCBCTTCCEEECCSSCCBEEEEEEHHHHT------
T ss_pred             ccEEeeccCcccccCc--ccccccCEEeCcCCccccccc------cccCCCCCEEeCcCCccCccccccccccc------
Confidence            4455555554443332  244666666666665433221      146788888888888887543  334433      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                        +++|++|++++|.+..         ++..+..+++|++|++++|.+.+..+...    +..+++|++|++++|.+.+.
T Consensus       372 --~~~L~~L~l~~n~l~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~  436 (570)
T 2z63_A          372 --TTSLKYLDLSFNGVIT---------MSSNFLGLEQLEHLDFQHSNLKQMSEFSV----FLSLRNLIYLDISHTHTRVA  436 (570)
T ss_dssp             --CSCCCEEECCSCSEEE---------EEEEEETCTTCCEEECTTSEEESCTTSCT----TTTCTTCCEEECTTSCCEEC
T ss_pred             --cCccCEEECCCCcccc---------ccccccccCCCCEEEccCCccccccchhh----hhcCCCCCEEeCcCCccccc
Confidence              5788888888888765         33337788899999999988765433111    24578899999999988764


Q ss_pred             ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930          325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  404 (453)
Q Consensus       325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~  404 (453)
                      .+        ..+.   .+++|++|++++|.+++.   .+|..+..+++|+.|++++|.+++.     .|   ..+..++
T Consensus       437 ~~--------~~~~---~l~~L~~L~l~~n~l~~~---~~p~~~~~l~~L~~L~l~~n~l~~~-----~~---~~~~~l~  494 (570)
T 2z63_A          437 FN--------GIFN---GLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQL-----SP---TAFNSLS  494 (570)
T ss_dssp             CT--------TTTT---TCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE-----CT---TTTTTCT
T ss_pred             ch--------hhhh---cCCcCcEEECcCCcCccc---cchhhhhcccCCCEEECCCCccccC-----Ch---hhhhccc
Confidence            33        3334   678999999999998742   3667788899999999999999873     24   5577889


Q ss_pred             CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930          405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN  451 (453)
Q Consensus       405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  451 (453)
                      +|++|++++|+++..    .+..+.. .++|+.|++++|+++...+.
T Consensus       495 ~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          495 SLQVLNMASNQLKSV----PDGIFDR-LTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCCEEECCSSCCSCC----CTTTTTT-CTTCCEEECCSSCBCCCTTT
T ss_pred             CCCEEeCCCCcCCCC----CHHHhhc-ccCCcEEEecCCcccCCCcc
Confidence            999999999999874    2344555 35699999999999887653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.69  E-value=4.2e-18  Score=175.41  Aligned_cols=237  Identities=16%  Similarity=0.161  Sum_probs=179.5

Q ss_pred             cccceeccccccchHH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcc
Q 012930          165 HYARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  243 (453)
Q Consensus       165 ~~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~  243 (453)
                      ..++.++++++....+ +..+..+++|++|++++|.+......    .+..+++|++|++++|.+++..+..+..     
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----   96 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD----AFYSLGSLEHLDLSDNHLSSLSSSWFGP-----   96 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCCSCCHHHHTT-----
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh----hccccccCCEEECCCCccCccCHHHhcc-----
Confidence            3688888888877665 35677889999999999997654322    2568899999999999999887776754     


Q ss_pred             ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHH-HHHHHHHhhCCCCCCEEEcCCCCCC
Q 012930          244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG-RMVFSSLLEASSSLSILDLSGNSIG  322 (453)
Q Consensus       244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~~L~~~~~~L~~L~Ls~n~l~  322 (453)
                         +.+|++|++++|.++..+       .+..+.++++|++|++++|.+.+..+ ..+     ..+++|++|++++|.++
T Consensus        97 ---l~~L~~L~Ls~n~l~~~~-------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           97 ---LSSLKYLNLMGNPYQTLG-------VTSLFPNLTNLQTLRIGNVETFSEIRRIDF-----AGLTSLNELEIKALSLR  161 (549)
T ss_dssp             ---CTTCCEEECTTCCCSSSC-------SSCSCTTCTTCCEEEEEESSSCCEECTTTT-----TTCCEEEEEEEEETTCC
T ss_pred             ---CCCCcEEECCCCcccccc-------hhhhhhccCCccEEECCCCccccccCHhhh-----hcccccCeeeccCCccc
Confidence               689999999999988522       23456789999999999998433333 222     45789999999999998


Q ss_pred             CcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHH-HhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcC
Q 012930          323 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA-LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE  401 (453)
Q Consensus       323 ~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~  401 (453)
                      +..+        ..++   .+++|++|++++|.++.     ++.. +..+++|+.|++++|.+++..+...     ....
T Consensus       162 ~~~~--------~~l~---~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~~  220 (549)
T 2z81_A          162 NYQS--------QSLK---SIRDIHHLTLHLSESAF-----LLEIFADILSSVRYLELRDTNLARFQFSPL-----PVDE  220 (549)
T ss_dssp             EECT--------TTTT---TCSEEEEEEEECSBSTT-----HHHHHHHSTTTBSEEEEESCBCTTCCCCCC-----SSCC
T ss_pred             ccCh--------hhhh---ccccCceEecccCcccc-----cchhhHhhcccccEEEccCCcccccccccc-----chhh
Confidence            7544        4444   67899999999998875     4443 4578999999999999876211000     1234


Q ss_pred             CCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          402 RCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       402 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      .+++|++|++++|.+++.+...+...+.. ...|+.+++++|.+.+
T Consensus       221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~-~~~L~~l~l~~~~~~~  265 (549)
T 2z81_A          221 VSSPMKKLAFRGSVLTDESFNELLKLLRY-ILELSEVEFDDCTLNG  265 (549)
T ss_dssp             CCCCCCEEEEESCEEEHHHHHHHHGGGGG-CTTCCEEEEESCEEEC
T ss_pred             hhhcccceeccccccchhHHHHHHHHhhh-hccccccccccccccc
Confidence            56889999999999998877777776666 3568899988887654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.69  E-value=5.6e-18  Score=175.75  Aligned_cols=227  Identities=19%  Similarity=0.150  Sum_probs=143.4

Q ss_pred             cCCceeeeehhhhc------cccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcC
Q 012930          151 CDYSKLSYHCQQFG------HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFL  224 (453)
Q Consensus       151 ~~l~~l~l~~~~~~------~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~  224 (453)
                      .+++.|.++.+.+.      ..++.|++++|.+..++.   ..++|++|++++|.+....        ..+++|+.|+++
T Consensus        61 ~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~--------~~l~~L~~L~L~  129 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIF  129 (622)
T ss_dssp             TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCC--------CCCTTCCEEECC
T ss_pred             CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCC--------CCCCCcCEEECC
Confidence            45555555544221      257777777777665554   5577888888887754421        145678888888


Q ss_pred             CCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHH
Q 012930          225 HCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSL  304 (453)
Q Consensus       225 ~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L  304 (453)
                      +|+++....            ..++|++|++++|.++...         .   ..++|+.|++++|.++. .+       
T Consensus       130 ~N~l~~lp~------------~l~~L~~L~Ls~N~l~~l~---------~---~~~~L~~L~L~~N~l~~-l~-------  177 (622)
T 3g06_A          130 GNQLTSLPV------------LPPGLQELSVSDNQLASLP---------A---LPSELCKLWAYNNQLTS-LP-------  177 (622)
T ss_dssp             SSCCSCCCC------------CCTTCCEEECCSSCCSCCC---------C---CCTTCCEEECCSSCCSC-CC-------
T ss_pred             CCCCCcCCC------------CCCCCCEEECcCCcCCCcC---------C---ccCCCCEEECCCCCCCC-Cc-------
Confidence            887764211            0367888888888776521         1   22455555555555544 22       


Q ss_pred             hhCCCCCCEEEcCCCCCCCccccc--------CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccE
Q 012930          305 LEASSSLSILDLSGNSIGGWLSKY--------DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEI  376 (453)
Q Consensus       305 ~~~~~~L~~L~Ls~n~l~~~~~~~--------~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  376 (453)
                       ..+++|+.|++++|.+++.....        ....+. .+.  ..+++|++|++++|+|+.     +|   ..+++|+.
T Consensus       178 -~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~-~l~--~~~~~L~~L~Ls~N~L~~-----lp---~~l~~L~~  245 (622)
T 3g06_A          178 -MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SLP--ALPSGLKELIVSGNRLTS-----LP---VLPSELKE  245 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCC--CCCTTCCEEECCSSCCSC-----CC---CCCTTCCE
T ss_pred             -ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCccc-ccC--CCCCCCCEEEccCCccCc-----CC---CCCCcCcE
Confidence             12355666666666655411000        000000 001  123678999999999886     44   46688999


Q ss_pred             EeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          377 LDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       377 L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      |++++|.|+.      +|   .   .+++|+.|+|++|+|+.     ++..+..+ ++|+.|+|++|.|++..+
T Consensus       246 L~Ls~N~L~~------lp---~---~~~~L~~L~Ls~N~L~~-----lp~~l~~l-~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          246 LMVSGNRLTS------LP---M---LPSGLLSLSVYRNQLTR-----LPESLIHL-SSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             EECCSSCCSC------CC---C---CCTTCCEEECCSSCCCS-----CCGGGGGS-CTTCEEECCSCCCCHHHH
T ss_pred             EECCCCCCCc------CC---c---ccccCcEEeCCCCCCCc-----CCHHHhhc-cccCEEEecCCCCCCcCH
Confidence            9999999986      65   2   45789999999999986     56677774 569999999999987654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.69  E-value=1.8e-18  Score=187.14  Aligned_cols=90  Identities=17%  Similarity=0.147  Sum_probs=66.3

Q ss_pred             CcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHH
Q 012930          344 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ  423 (453)
Q Consensus       344 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~  423 (453)
                      ++|+.|++++|.++.    ..+..+..+++|+.|+|++|.|+..     .|   .++..+++|++|+|++|.++..    
T Consensus       266 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~-----~~---~~~~~l~~L~~L~Ls~N~l~~~----  329 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFS----LNSRVFETLKDLKVLNLAYNKINKI-----AD---EAFYGLDNLQVLNLSYNLLGEL----  329 (844)
T ss_dssp             SCCCEEECTTCCCCE----ECSCCSSSCCCCCEEEEESCCCCEE-----CT---TTTTTCSSCCEEEEESCCCSCC----
T ss_pred             CCccEEECCCCcccc----cChhhhhcCCCCCEEECCCCcCCCC-----Ch---HHhcCCCCCCEEECCCCCCCcc----
Confidence            578888888888876    3455677888888999988888762     23   4567778899999999988763    


Q ss_pred             HHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          424 LLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       424 l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      .+..+..+ ++|+.|++++|.|++..+
T Consensus       330 ~~~~~~~l-~~L~~L~L~~N~i~~~~~  355 (844)
T 3j0a_A          330 YSSNFYGL-PKVAYIDLQKNHIAIIQD  355 (844)
T ss_dssp             CSCSCSSC-TTCCEEECCSCCCCCCCS
T ss_pred             CHHHhcCC-CCCCEEECCCCCCCccCh
Confidence            24455553 458999999998876443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.69  E-value=2.1e-17  Score=154.69  Aligned_cols=184  Identities=18%  Similarity=0.191  Sum_probs=143.9

Q ss_pred             cCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCC
Q 012930          214 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD  293 (453)
Q Consensus       214 ~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~  293 (453)
                      .+++|++|++++|.++...  .+..        +++|++|++++|.++.         + ..+..+++|++|++++|.++
T Consensus        39 ~l~~L~~L~l~~~~i~~~~--~l~~--------l~~L~~L~l~~n~l~~---------~-~~l~~l~~L~~L~L~~n~l~   98 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ--GIQY--------LPNVRYLALGGNKLHD---------I-SALKELTNLTYLILTGNQLQ   98 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT--TGGG--------CTTCCEEECTTSCCCC---------C-GGGTTCTTCCEEECTTSCCC
T ss_pred             cccceeeeeeCCCCccccc--cccc--------CCCCcEEECCCCCCCC---------c-hhhcCCCCCCEEECCCCccC
Confidence            4578999999999887532  2222        5899999999999887         2 26778999999999999998


Q ss_pred             hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC
Q 012930          294 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN  373 (453)
Q Consensus       294 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  373 (453)
                      +..+..     +..+++|++|++++|.+++..+        ..+.   .+++|++|++++|+++.    ..+..+..+++
T Consensus        99 ~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~--------~~~~---~l~~L~~L~L~~n~l~~----~~~~~~~~l~~  158 (272)
T 3rfs_A           99 SLPNGV-----FDKLTNLKELVLVENQLQSLPD--------GVFD---KLTNLTYLNLAHNQLQS----LPKGVFDKLTN  158 (272)
T ss_dssp             CCCTTT-----TTTCTTCCEEECTTSCCCCCCT--------TTTT---TCTTCCEEECCSSCCCC----CCTTTTTTCTT
T ss_pred             ccChhH-----hcCCcCCCEEECCCCcCCccCH--------HHhc---cCCCCCEEECCCCccCc----cCHHHhccCcc
Confidence            743332     2457999999999999986433        2334   67899999999999996    23445688999


Q ss_pred             ccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          374 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       374 L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      |+.|++++|.+++      ++.  ..+..+++|++|++++|+++..    .+..+.. .++|+.|++++|.+....+
T Consensus       159 L~~L~l~~n~l~~------~~~--~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          159 LTELDLSYNQLQS------LPE--GVFDKLTQLKDLRLYQNQLKSV----PDGVFDR-LTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CCEEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCCSCC----CTTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred             CCEEECCCCCcCc------cCH--HHhcCCccCCEEECCCCcCCcc----CHHHHhC-CcCCCEEEccCCCccccCc
Confidence            9999999999987      332  4467889999999999999874    2334555 3569999999999887654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.69  E-value=3.7e-16  Score=136.53  Aligned_cols=136  Identities=13%  Similarity=0.225  Sum_probs=80.5

Q ss_pred             HHHHHHhhcCCCCccEEEcCCC-CCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCccc
Q 012930          269 VVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR  347 (453)
Q Consensus       269 ~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~  347 (453)
                      .+.+...+...++|++|+|++| .+.+.+...++++|..+ +.|+.|+|++|.|+                         
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~ig-------------------------   83 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAIS-------------------------   83 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCB-------------------------
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCC-------------------------
Confidence            3467777778888888888885 88888888888887544 55555555555555                         


Q ss_pred             EEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCC---CCChhhHHHH
Q 012930          348 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC---ELSGRGVSQL  424 (453)
Q Consensus       348 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n---~l~~~~~~~l  424 (453)
                                +.|++.+++++..+++|++|+|+.|.|++.|+.+++    +++..++.|++|+|++|   .+++.|..++
T Consensus        84 ----------d~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala----~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i  149 (197)
T 1pgv_A           84 ----------DSEARGLIELIETSPSLRVLNVESNFLTPELLARLL----RSTLVTQSIVEFKADNQRQSVLGNQVEMDM  149 (197)
T ss_dssp             ----------HHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH----HHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             ----------hHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH----HHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence                      444445555555555555555555555555555554    23444455555555433   4455555555


Q ss_pred             HHHHhcCCCCCcEEECcCCCC
Q 012930          425 LDTLSTLRRPPTSLSIADNNL  445 (453)
Q Consensus       425 ~~~l~~~~~~L~~L~Ls~N~l  445 (453)
                      ++++.. |++|+.|+++.|.+
T Consensus       150 a~aL~~-N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          150 MMAIEE-NESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHH-CSSCCEEECCCCCH
T ss_pred             HHHHHh-CCCcCeEeccCCCc
Confidence            555555 44555555554443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.68  E-value=5.7e-18  Score=159.97  Aligned_cols=203  Identities=17%  Similarity=0.136  Sum_probs=134.7

Q ss_pred             hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCC
Q 012930          184 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN  263 (453)
Q Consensus       184 l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~  263 (453)
                      +..++++++++++++.+......       -.++++.|+|++|.++...+..+..        +.+|++|++++|.++..
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~-------~~~~l~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~   70 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPD-------LPKDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRAELTKL   70 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSC-------CCTTCCEEECTTSCCSEEEGGGGTT--------CTTCCEEECTTSCCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCCC-------CCCCCCEEEcCCCcCCccCHHHhhc--------CCCCCEEECCCCccCcc
Confidence            34557788888887775543211       1257788888888887665555443        47788888888877651


Q ss_pred             CchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCC
Q 012930          264 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL  343 (453)
Q Consensus       264 ~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~  343 (453)
                               +. ...+++|++|++++|.+.. .+..+     ..+++|++|++++|.+++..+        ..+.   .+
T Consensus        71 ---------~~-~~~l~~L~~L~Ls~N~l~~-l~~~~-----~~l~~L~~L~l~~N~l~~l~~--------~~~~---~l  123 (290)
T 1p9a_G           71 ---------QV-DGTLPVLGTLDLSHNQLQS-LPLLG-----QTLPALTVLDVSFNRLTSLPL--------GALR---GL  123 (290)
T ss_dssp             ---------EC-CSCCTTCCEEECCSSCCSS-CCCCT-----TTCTTCCEEECCSSCCCCCCS--------STTT---TC
T ss_pred             ---------cC-CCCCCcCCEEECCCCcCCc-Cchhh-----ccCCCCCEEECCCCcCcccCH--------HHHc---CC
Confidence                     11 1467788888888887764 33222     346778888888888775332        2333   66


Q ss_pred             CcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHH
Q 012930          344 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ  423 (453)
Q Consensus       344 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~  423 (453)
                      ++|++|+|++|+++.    ..+..+..+++|+.|+|++|+|+.      +|.  ..+..+++|++|+|++|+|+.     
T Consensus       124 ~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------l~~--~~~~~l~~L~~L~L~~N~l~~-----  186 (290)
T 1p9a_G          124 GELQELYLKGNELKT----LPPGLLTPTPKLEKLSLANNNLTE------LPA--GLLNGLENLDTLLLQENSLYT-----  186 (290)
T ss_dssp             TTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCSC------CCT--TTTTTCTTCCEEECCSSCCCC-----
T ss_pred             CCCCEEECCCCCCCc----cChhhcccccCCCEEECCCCcCCc------cCH--HHhcCcCCCCEEECCCCcCCc-----
Confidence            788888888888775    223345677788888888888875      442  345667788888888888775     


Q ss_pred             HHHHHhcCCCCCcEEECcCCCCC
Q 012930          424 LLDTLSTLRRPPTSLSIADNNLG  446 (453)
Q Consensus       424 l~~~l~~~~~~L~~L~Ls~N~l~  446 (453)
                      ++..+.. ..+|+.|+|++|++.
T Consensus       187 ip~~~~~-~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          187 IPKGFFG-SHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCTTTTT-TCCCSEEECCSCCBC
T ss_pred             cChhhcc-cccCCeEEeCCCCcc
Confidence            4555555 345888888888764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.68  E-value=2.4e-17  Score=165.74  Aligned_cols=177  Identities=15%  Similarity=0.170  Sum_probs=105.6

Q ss_pred             cCCceeeeehhhhc-------cccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEc
Q 012930          151 CDYSKLSYHCQQFG-------HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEF  223 (453)
Q Consensus       151 ~~l~~l~l~~~~~~-------~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L  223 (453)
                      .+++.+.++.+.+.       ..++.|+++++.+..++  +..+++|++|++++|.+... +      +..+++|++|++
T Consensus        64 ~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l-~------~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL-D------VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCC-C------CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCee-c------CCCCCcCCEEEC
Confidence            45555555544221       14666777766665542  55667777777777765442 1      446667777777


Q ss_pred             CCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHH
Q 012930          224 LHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSS  303 (453)
Q Consensus       224 ~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  303 (453)
                      ++|.+++..   +..        +++|++|++++|....        .+  .+..+++|++|++++|++++ .+      
T Consensus       135 ~~N~l~~l~---l~~--------l~~L~~L~l~~n~~~~--------~~--~~~~l~~L~~L~ls~n~l~~-l~------  186 (457)
T 3bz5_A          135 ARNTLTEID---VSH--------NTQLTELDCHLNKKIT--------KL--DVTPQTQLTTLDCSFNKITE-LD------  186 (457)
T ss_dssp             TTSCCSCCC---CTT--------CTTCCEEECTTCSCCC--------CC--CCTTCTTCCEEECCSSCCCC-CC------
T ss_pred             CCCccceec---ccc--------CCcCCEEECCCCCccc--------cc--ccccCCcCCEEECCCCccce-ec------
Confidence            777666531   111        4667777777774333        12  24456777777777777665 22      


Q ss_pred             HhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCC
Q 012930          304 LLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT  383 (453)
Q Consensus       304 L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~  383 (453)
                       +..+++|+.|++++|.+++.           .   +..+++|++|++++|++++     +|  +..+++|+.|++++|+
T Consensus       187 -l~~l~~L~~L~l~~N~l~~~-----------~---l~~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          187 -VSQNKLLNRLNCDTNNITKL-----------D---LNQNIQLTFLDCSSNKLTE-----ID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCC-----------C---CTTCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCSSC
T ss_pred             -cccCCCCCEEECcCCcCCee-----------c---cccCCCCCEEECcCCcccc-----cC--ccccCCCCEEEeeCCc
Confidence             23456777777777776651           1   2255677777777777765     33  5666777777777777


Q ss_pred             CCh
Q 012930          384 IED  386 (453)
Q Consensus       384 i~~  386 (453)
                      +++
T Consensus       245 l~~  247 (457)
T 3bz5_A          245 LTE  247 (457)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.67  E-value=3.4e-18  Score=184.98  Aligned_cols=87  Identities=24%  Similarity=0.204  Sum_probs=42.5

Q ss_pred             CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhH
Q 012930          309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG  388 (453)
Q Consensus       309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  388 (453)
                      ++|+.|++++|.+.+..+        ..   +..+++|++|+|++|+++.    ..+.++..+++|+.|+|++|.+++. 
T Consensus       266 ~~L~~L~Ls~n~l~~~~~--------~~---~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~~-  329 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNS--------RV---FETLKDLKVLNLAYNKINK----IADEAFYGLDNLQVLNLSYNLLGEL-  329 (844)
T ss_dssp             SCCCEEECTTCCCCEECS--------CC---SSSCCCCCEEEEESCCCCE----ECTTTTTTCSSCCEEEEESCCCSCC-
T ss_pred             CCccEEECCCCcccccCh--------hh---hhcCCCCCEEECCCCcCCC----CChHHhcCCCCCCEEECCCCCCCcc-
Confidence            456666666665554222        11   2244555555555555554    2233445555555555555555431 


Q ss_pred             HHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          389 IRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       389 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                          .|   ..+..+++|++|++++|.++.
T Consensus       330 ----~~---~~~~~l~~L~~L~L~~N~i~~  352 (844)
T 3j0a_A          330 ----YS---SNFYGLPKVAYIDLQKNHIAI  352 (844)
T ss_dssp             ----CS---CSCSSCTTCCEEECCSCCCCC
T ss_pred             ----CH---HHhcCCCCCCEEECCCCCCCc
Confidence                12   334444555555555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.67  E-value=3.6e-17  Score=169.04  Aligned_cols=159  Identities=24%  Similarity=0.272  Sum_probs=120.8

Q ss_pred             CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCCh--hHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR--DFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~--~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                      +++|++|++++|.+++        ..+..+..+++|++|+|++|++.+  ..+..     +..+++|++|++++|.+++.
T Consensus       352 l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~~~l~~L~~L~l~~N~l~~~  418 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTD--------SVFQGCSTLKRLQTLILQRNGLKNFFKVALM-----TKNMSSLETLDVSLNSLNSH  418 (562)
T ss_dssp             CCCCCEEECCSSCCCT--------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHT-----TTTCTTCCEEECTTSCCBSC
T ss_pred             CCCceEEECCCCcccc--------chhhhhcccCCCCEEECCCCCcCCcccchhh-----hcCCCCCCEEECCCCcCCCc
Confidence            5788999999998887        566677889999999999999886  22322     24578999999999998864


Q ss_pred             ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930          325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  404 (453)
Q Consensus       325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~  404 (453)
                      .+        .  ..+..+++|++|++++|++++.    ++..+.  ++|+.|++++|+|+.      +|   ..+..++
T Consensus       419 ~~--------~--~~~~~l~~L~~L~l~~n~l~~~----~~~~l~--~~L~~L~L~~N~l~~------ip---~~~~~l~  473 (562)
T 3a79_B          419 AY--------D--RTCAWAESILVLNLSSNMLTGS----VFRCLP--PKVKVLDLHNNRIMS------IP---KDVTHLQ  473 (562)
T ss_dssp             CS--------S--CCCCCCTTCCEEECCSSCCCGG----GGSSCC--TTCSEEECCSSCCCC------CC---TTTTSSC
T ss_pred             cC--------h--hhhcCcccCCEEECCCCCCCcc----hhhhhc--CcCCEEECCCCcCcc------cC---hhhcCCC
Confidence            33        1  1233678999999999999862    333222  689999999999986      66   4455789


Q ss_pred             CccEEEccCCCCChhhHHHHHHH-HhcCCCCCcEEECcCCCCCccc
Q 012930          405 PLVELYLENCELSGRGVSQLLDT-LSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       405 ~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                      +|++|+|++|+|+.     ++.. +.. .++|+.|++++|++....
T Consensus       474 ~L~~L~L~~N~l~~-----l~~~~~~~-l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          474 ALQELNVASNQLKS-----VPDGVFDR-LTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             CCSEEECCSSCCCC-----CCTTSTTT-CTTCCCEECCSCCBCCCH
T ss_pred             CCCEEECCCCCCCC-----CCHHHHhc-CCCCCEEEecCCCcCCCc
Confidence            99999999999986     3444 555 356999999999987643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.67  E-value=3.5e-17  Score=151.22  Aligned_cols=191  Identities=17%  Similarity=0.155  Sum_probs=128.3

Q ss_pred             CccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhh
Q 012930          189 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV  268 (453)
Q Consensus       189 ~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i  268 (453)
                      ..++++++++.+......       -.+++++|+|++|.++...+..+..        +.+|++|++++|.++.      
T Consensus        15 ~~~~l~~~~~~l~~~p~~-------~~~~l~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~------   73 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSG-------IPADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQT------   73 (251)
T ss_dssp             GGTEEECTTCCCSSCCSC-------CCTTCCEEECTTSCCCCCCTTTTTT--------CTTCCEEECTTSCCCC------
T ss_pred             CCeEEecCCCCccccCCC-------CCCCCCEEEccCCCcCccCHhHhcC--------cccCCEEECCCCcCCc------
Confidence            445666666654432211       1246777888888777655544433        4778888888888776      


Q ss_pred             HHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccE
Q 012930          269 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL  348 (453)
Q Consensus       269 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~  348 (453)
                        ..+..+..+++|++|+|++|.+++..+..     +..+++|++|+|++|.+++..+        ..+.   .+++|++
T Consensus        74 --~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~--------~~~~---~l~~L~~  135 (251)
T 3m19_A           74 --LSAGVFDDLTELGTLGLANNQLASLPLGV-----FDHLTQLDKLYLGGNQLKSLPS--------GVFD---RLTKLKE  135 (251)
T ss_dssp             --CCTTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT--------TTTT---TCTTCCE
T ss_pred             --cCHhHhccCCcCCEEECCCCcccccChhH-----hcccCCCCEEEcCCCcCCCcCh--------hHhc---cCCcccE
Confidence              33445667888888888888887633322     2446888899999888886322        2233   6788889


Q ss_pred             EEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChh--hHHHHHH
Q 012930          349 LNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR--GVSQLLD  426 (453)
Q Consensus       349 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~  426 (453)
                      |+|++|+|+.    ..+..+..+++|+.|+|++|+|+.      ++.  ..+..+++|++|++++|.++..  ....+..
T Consensus       136 L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~  203 (251)
T 3m19_A          136 LRLNTNQLQS----IPAGAFDKLTNLQTLSLSTNQLQS------VPH--GAFDRLGKLQTITLFGNQFDCSRCEILYLSQ  203 (251)
T ss_dssp             EECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSCCBCTTSTTHHHHHH
T ss_pred             EECcCCcCCc----cCHHHcCcCcCCCEEECCCCcCCc------cCH--HHHhCCCCCCEEEeeCCceeCCccccHHHHH
Confidence            9999998886    223367788889999999998876      332  4567778899999999988664  3334455


Q ss_pred             HHhc
Q 012930          427 TLST  430 (453)
Q Consensus       427 ~l~~  430 (453)
                      .+..
T Consensus       204 ~~~~  207 (251)
T 3m19_A          204 WIRE  207 (251)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.66  E-value=2.2e-16  Score=138.65  Aligned_cols=140  Identities=13%  Similarity=0.063  Sum_probs=102.1

Q ss_pred             HHHHHHHhcCCCccEEEcCCC-CCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccE
Q 012930          206 ALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCS  284 (453)
Q Consensus       206 ~~~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~  284 (453)
                      ..+.......++|++|+|++| .|++.+...+++.+                                    ..+++|++
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L------------------------------------~~~~~L~~   69 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL------------------------------------KTNTYVKK   69 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHH------------------------------------TTCCSCCE
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHH------------------------------------HhCCCcCE
Confidence            334444556666777777776 67766666665543                                    44566777


Q ss_pred             EEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEe--cCCCCChhhHH
Q 012930          285 LKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL--RGNNLCKADAR  362 (453)
Q Consensus       285 L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L--~~n~l~~~~~~  362 (453)
                      |+|++|.+++.+...+++++..+ ++|++|+|++|.|++.+    +..+..++.   ..++|++|+|  ++|.|++.|+.
T Consensus        70 L~Ls~n~i~~~g~~~l~~~L~~n-~~L~~L~L~~N~i~~~g----~~~l~~~L~---~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           70 FSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFISGSG----ILALVEALQ---SNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             EECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCCHHH----HHHHHHGGG---GCSSCCEEECCCCSSCCCHHHHH
T ss_pred             EECcCCCCChHHHHHHHHHHHhC-CCcCEEECcCCcCCHHH----HHHHHHHHH---hCCCceEEEecCCCCCCCHHHHH
Confidence            77777777777777777776554 66777777777777532    223444455   4578999999  88999999999


Q ss_pred             HHHHHHhCCCCccEEeCCCCCCChhHH
Q 012930          363 DLGSALVHIPNLEILDISDNTIEDDGI  389 (453)
Q Consensus       363 ~l~~~l~~~~~L~~L~Ls~N~i~~~g~  389 (453)
                      .+...+..+++|++|+|++|.|++.|.
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n~i~~~~~  168 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFTQQGPRLR  168 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSHHHHHH
T ss_pred             HHHHHHHhCCCcCEEeccCCCCChHHH
Confidence            999999999999999999999998873

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.66  E-value=3e-17  Score=151.70  Aligned_cols=181  Identities=18%  Similarity=0.170  Sum_probs=141.2

Q ss_pred             CCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChh
Q 012930          216 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  295 (453)
Q Consensus       216 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~  295 (453)
                      ...++++++++.++... ..+          ...++.|++++|.+..        ..+..+.++++|++|+|++|.+.+.
T Consensus        14 ~~~~~l~~~~~~l~~~p-~~~----------~~~l~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~   74 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVP-SGI----------PADTEKLDLQSTGLAT--------LSDATFRGLTKLTWLNLDYNQLQTL   74 (251)
T ss_dssp             GGGTEEECTTCCCSSCC-SCC----------CTTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             CCCeEEecCCCCccccC-CCC----------CCCCCEEEccCCCcCc--------cCHhHhcCcccCCEEECCCCcCCcc
Confidence            45788999999887432 111          3679999999999988        3445677899999999999999874


Q ss_pred             HHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCcc
Q 012930          296 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE  375 (453)
Q Consensus       296 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  375 (453)
                      .+..+     ..+++|++|++++|.+++..+        ..+.   .+++|++|+|++|+|+.    ..+..+..+++|+
T Consensus        75 ~~~~~-----~~l~~L~~L~L~~n~l~~~~~--------~~~~---~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~  134 (251)
T 3m19_A           75 SAGVF-----DDLTELGTLGLANNQLASLPL--------GVFD---HLTQLDKLYLGGNQLKS----LPSGVFDRLTKLK  134 (251)
T ss_dssp             CTTTT-----TTCTTCCEEECTTSCCCCCCT--------TTTT---TCTTCCEEECCSSCCCC----CCTTTTTTCTTCC
T ss_pred             CHhHh-----ccCCcCCEEECCCCcccccCh--------hHhc---ccCCCCEEEcCCCcCCC----cChhHhccCCccc
Confidence            44333     457999999999999986433        3333   67899999999999996    2234567899999


Q ss_pred             EEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930          376 ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       376 ~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  448 (453)
                      .|+|++|.|+.      +|.  ..+..+++|++|+|++|+|+..    .+..+.. .++|+.|++++|.+...
T Consensus       135 ~L~Ls~N~l~~------~~~--~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          135 ELRLNTNQLQS------IPA--GAFDKLTNLQTLSLSTNQLQSV----PHGAFDR-LGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             EEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCCSCC----CTTTTTT-CTTCCEEECCSCCBCTT
T ss_pred             EEECcCCcCCc------cCH--HHcCcCcCCCEEECCCCcCCcc----CHHHHhC-CCCCCEEEeeCCceeCC
Confidence            99999999987      442  4577889999999999999874    2335555 35699999999999765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.64  E-value=2.7e-16  Score=148.53  Aligned_cols=171  Identities=22%  Similarity=0.188  Sum_probs=110.1

Q ss_pred             cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCc
Q 012930          186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  265 (453)
Q Consensus       186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~  265 (453)
                      .+++|+.|++++|.+.....      +..+++|++|++++|.+++..+  +..        +++|++|++++|.++.   
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~------~~~l~~L~~L~L~~n~l~~~~~--l~~--------l~~L~~L~l~~n~l~~---  104 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQG------IQYLPNVTKLFLNGNKLTDIKP--LAN--------LKNLGWLFLDENKVKD---  104 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTT------GGGCTTCCEEECCSSCCCCCGG--GTT--------CTTCCEEECCSSCCCC---
T ss_pred             hcCcccEEEccCCCcccChh------HhcCCCCCEEEccCCccCCCcc--ccc--------CCCCCEEECCCCcCCC---
Confidence            34677778887777543311      4566777778887777765443  221        4677777777777765   


Q ss_pred             hhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930          266 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  345 (453)
Q Consensus       266 ~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~  345 (453)
                            ++ .+..+++|++|++++|.+.+.  ..     +..+++|+.|++++|.+++.          ..+.   .+++
T Consensus       105 ------~~-~l~~l~~L~~L~L~~n~i~~~--~~-----l~~l~~L~~L~l~~n~l~~~----------~~l~---~l~~  157 (291)
T 1h6t_A          105 ------LS-SLKDLKKLKSLSLEHNGISDI--NG-----LVHLPQLESLYLGNNKITDI----------TVLS---RLTK  157 (291)
T ss_dssp             ------GG-GGTTCTTCCEEECTTSCCCCC--GG-----GGGCTTCCEEECCSSCCCCC----------GGGG---GCTT
T ss_pred             ------Ch-hhccCCCCCEEECCCCcCCCC--hh-----hcCCCCCCEEEccCCcCCcc----------hhhc---cCCC
Confidence                  21 266777777777777777652  11     23457777777777777652          2233   5567


Q ss_pred             ccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          346 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       346 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      |++|++++|.+++     ++. +..+++|+.|++++|.|++      ++    .+..+++|+.|++++|.++.
T Consensus       158 L~~L~L~~N~l~~-----~~~-l~~l~~L~~L~L~~N~i~~------l~----~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          158 LDTLSLEDNQISD-----IVP-LAGLTKLQNLYLSKNHISD------LR----ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CSEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCB------CG----GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCEEEccCCcccc-----chh-hcCCCccCEEECCCCcCCC------Ch----hhccCCCCCEEECcCCcccC
Confidence            7777777777775     222 6677777777777777776      33    25566777777777776655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=4.6e-16  Score=138.16  Aligned_cols=151  Identities=15%  Similarity=0.187  Sum_probs=117.1

Q ss_pred             cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930          248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  327 (453)
Q Consensus       248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  327 (453)
                      .+|+.|++++|.++.         ++ .+..+++|++|++++|.+...  ..     +..+++|++|++++|.+++..+ 
T Consensus        44 ~~L~~L~l~~n~i~~---------l~-~l~~l~~L~~L~l~~n~~~~~--~~-----l~~l~~L~~L~l~~n~l~~~~~-  105 (197)
T 4ezg_A           44 NSLTYITLANINVTD---------LT-GIEYAHNIKDLTINNIHATNY--NP-----ISGLSNLERLRIMGKDVTSDKI-  105 (197)
T ss_dssp             HTCCEEEEESSCCSC---------CT-TGGGCTTCSEEEEESCCCSCC--GG-----GTTCTTCCEEEEECTTCBGGGS-
T ss_pred             CCccEEeccCCCccC---------hH-HHhcCCCCCEEEccCCCCCcc--hh-----hhcCCCCCEEEeECCccCcccC-
Confidence            678889999888876         33 467889999999999977652  12     2457899999999999986433 


Q ss_pred             cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCC-CChhHHHhHHHHHHhhcCCCCCc
Q 012930          328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERCNPL  406 (453)
Q Consensus       328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~l~~~~~L  406 (453)
                                ..+..+++|++|++++|.+++.    .+..+..+++|+.|++++|. +++      +|    .+..+++|
T Consensus       106 ----------~~l~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~~i~~------~~----~l~~l~~L  161 (197)
T 4ezg_A          106 ----------PNLSGLTSLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAITD------IM----PLKTLPEL  161 (197)
T ss_dssp             ----------CCCTTCTTCCEEECCSSBCBGG----GHHHHTTCSSCCEEECCSCTBCCC------CG----GGGGCSSC
T ss_pred             ----------hhhcCCCCCCEEEecCCccCcH----hHHHHhhCCCCCEEEccCCCCccc------cH----hhcCCCCC
Confidence                      3344788999999999999973    56778899999999999998 887      44    25667899


Q ss_pred             cEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          407 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       407 ~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      ++|++++|++++.     . .+..+ ++|++|++++|+|++
T Consensus       162 ~~L~l~~n~i~~~-----~-~l~~l-~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          162 KSLNIQFDGVHDY-----R-GIEDF-PKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CEEECTTBCCCCC-----T-TGGGC-SSCCEEEECBC----
T ss_pred             CEEECCCCCCcCh-----H-HhccC-CCCCEEEeeCcccCC
Confidence            9999999999883     2 56664 559999999999976

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.63  E-value=1e-17  Score=173.31  Aligned_cols=229  Identities=17%  Similarity=0.140  Sum_probs=169.8

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.+++.++....++..+... +|++|++++|.+... +      ...+++|++|++++|.+....+.          .
T Consensus       283 ~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l-~------~~~l~~L~~L~l~~n~~~~~~~~----------~  344 (570)
T 2z63_A          283 NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQF-P------TLKLKSLKRLTFTSNKGGNAFSE----------V  344 (570)
T ss_dssp             TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSC-C------BCBCSSCCEEEEESCBSCCBCCC----------C
T ss_pred             cccEEEecCccchhhhhhhccC-CccEEeeccCccccc-C------cccccccCEEeCcCCcccccccc----------c
Confidence            5777778777777666666666 888888888886521 1      13678888999988876643322          1


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                      .+++|++|++++|.++..++      .+..+..+++|++|++++|.+.+..+.      +..+++|++|++++|.+.+..
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~------~~~l~~L~~L~l~~n~l~~~~  412 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGC------CSQSDFGTTSLKYLDLSFNGVITMSSN------FLGLEQLEHLDFQHSNLKQMS  412 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEE------EEHHHHTCSCCCEEECCSCSEEEEEEE------EETCTTCCEEECTTSEEESCT
T ss_pred             cCCCCCEEeCcCCccCcccc------ccccccccCccCEEECCCCcccccccc------ccccCCCCEEEccCCcccccc
Confidence            15889999999998876211      134566889999999999988763222      245789999999999887532


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  405 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~  405 (453)
                      +        .  ..+..+++|++|++++|.++.    ..+..+..+++|+.|++++|.+++..    +|   ..+..+++
T Consensus       413 ~--------~--~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~p---~~~~~l~~  471 (570)
T 2z63_A          413 E--------F--SVFLSLRNLIYLDISHTHTRV----AFNGIFNGLSSLEVLKMAGNSFQENF----LP---DIFTELRN  471 (570)
T ss_dssp             T--------S--CTTTTCTTCCEEECTTSCCEE----CCTTTTTTCTTCCEEECTTCEEGGGE----EC---SCCTTCTT
T ss_pred             c--------h--hhhhcCCCCCEEeCcCCcccc----cchhhhhcCCcCcEEECcCCcCcccc----ch---hhhhcccC
Confidence            2        1  123377899999999999887    35667889999999999999987421    44   55788899


Q ss_pred             ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      |++|++++|+++..    .+..+.. .++|++|++++|.|++..+
T Consensus       472 L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~l~~~~~  511 (570)
T 2z63_A          472 LTFLDLSQCQLEQL----SPTAFNS-LSSLQVLNMASNQLKSVPD  511 (570)
T ss_dssp             CCEEECTTSCCCEE----CTTTTTT-CTTCCEEECCSSCCSCCCT
T ss_pred             CCEEECCCCccccC----Chhhhhc-ccCCCEEeCCCCcCCCCCH
Confidence            99999999999985    3556666 3569999999999988654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.62  E-value=3.7e-16  Score=147.63  Aligned_cols=170  Identities=20%  Similarity=0.250  Sum_probs=99.8

Q ss_pred             CCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChh
Q 012930          216 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  295 (453)
Q Consensus       216 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~  295 (453)
                      ++|++|++++|.+....  .+..        +++|++|++++|.++.         +.. +..+++|++|++++|.+.+ 
T Consensus        46 ~~L~~L~l~~~~i~~~~--~~~~--------l~~L~~L~L~~n~l~~---------~~~-l~~l~~L~~L~l~~n~l~~-  104 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQ--GIQY--------LPNVTKLFLNGNKLTD---------IKP-LANLKNLGWLFLDENKVKD-  104 (291)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGG--------CTTCCEEECCSSCCCC---------CGG-GTTCTTCCEEECCSSCCCC-
T ss_pred             CcccEEEccCCCcccCh--hHhc--------CCCCCEEEccCCccCC---------Ccc-cccCCCCCEEECCCCcCCC-
Confidence            46667777777665431  1111        4667777777776665         111 5566777777777776665 


Q ss_pred             HHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCcc
Q 012930          296 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE  375 (453)
Q Consensus       296 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  375 (453)
                      .+.      +..+++|++|++++|.+++.          ..+.   .+++|++|++++|++++     + ..+..+++|+
T Consensus       105 ~~~------l~~l~~L~~L~L~~n~i~~~----------~~l~---~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~  159 (291)
T 1h6t_A          105 LSS------LKDLKKLKSLSLEHNGISDI----------NGLV---HLPQLESLYLGNNKITD-----I-TVLSRLTKLD  159 (291)
T ss_dssp             GGG------GTTCTTCCEEECTTSCCCCC----------GGGG---GCTTCCEEECCSSCCCC-----C-GGGGGCTTCS
T ss_pred             Chh------hccCCCCCEEECCCCcCCCC----------hhhc---CCCCCCEEEccCCcCCc-----c-hhhccCCCCC
Confidence            211      23456677777777766641          1233   45667777777776665     2 3456666777


Q ss_pred             EEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930          376 ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       376 ~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  448 (453)
                      .|++++|.|++      +++    +..+++|++|++++|.|++.     + .+.. .++|+.|++++|.+++.
T Consensus       160 ~L~L~~N~l~~------~~~----l~~l~~L~~L~L~~N~i~~l-----~-~l~~-l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          160 TLSLEDNQISD------IVP----LAGLTKLQNLYLSKNHISDL-----R-ALAG-LKNLDVLELFSQECLNK  215 (291)
T ss_dssp             EEECCSSCCCC------CGG----GTTCTTCCEEECCSSCCCBC-----G-GGTT-CTTCSEEEEEEEEEECC
T ss_pred             EEEccCCcccc------chh----hcCCCccCEEECCCCcCCCC-----h-hhcc-CCCCCEEECcCCcccCC
Confidence            77777777665      321    45556777777777776662     2 2444 24477777777666543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.60  E-value=1.7e-17  Score=152.03  Aligned_cols=198  Identities=14%  Similarity=0.055  Sum_probs=136.5

Q ss_pred             CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCC-CChhHHHHHHHHhhccccCCcceeEEEccC-CCCCCCCc
Q 012930          188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDI-SSFIENCP  265 (453)
Q Consensus       188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~-n~l~~~~~  265 (453)
                      .++++|++++|.+......    .+.++++|++|++++|. ++......+..        +++|++|++++ |.++.   
T Consensus        31 ~~l~~L~l~~n~l~~i~~~----~~~~l~~L~~L~l~~n~~l~~i~~~~f~~--------l~~L~~L~l~~~n~l~~---   95 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSH----AFSNLPNISRIYVSIDVTLQQLESHSFYN--------LSKVTHIEIRNTRNLTY---   95 (239)
T ss_dssp             TTCCEEEEESCCCSEECTT----TTTTCTTCCEEEEECCSSCCEECTTTEES--------CTTCCEEEEEEETTCCE---
T ss_pred             CcccEEEEeCCcceEECHH----HccCCCCCcEEeCCCCCCcceeCHhHcCC--------CcCCcEEECCCCCCeeE---
Confidence            4788888888886544322    24577888888888886 76544433322        57888888887 88776   


Q ss_pred             hhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCC---EEEcCCC-CCCCcccccCcCchHHhhcCCC
Q 012930          266 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLS---ILDLSGN-SIGGWLSKYDRSGPLFSLGAGK  341 (453)
Q Consensus       266 ~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~---~L~Ls~n-~l~~~~~~~~~~~l~~~l~~~~  341 (453)
                           ..+..+..+++|++|++++|.+.+ .+.      +..+++|+   +|++++| .+++..+        ..+   .
T Consensus        96 -----i~~~~f~~l~~L~~L~l~~n~l~~-lp~------~~~l~~L~~L~~L~l~~N~~l~~i~~--------~~~---~  152 (239)
T 2xwt_C           96 -----IDPDALKELPLLKFLGIFNTGLKM-FPD------LTKVYSTDIFFILEITDNPYMTSIPV--------NAF---Q  152 (239)
T ss_dssp             -----ECTTSEECCTTCCEEEEEEECCCS-CCC------CTTCCBCCSEEEEEEESCTTCCEECT--------TTT---T
T ss_pred             -----cCHHHhCCCCCCCEEeCCCCCCcc-ccc------cccccccccccEEECCCCcchhhcCc--------ccc---c
Confidence                 223456778889999999988876 332      23467777   9999998 7775322        223   3


Q ss_pred             CCCccc-EEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCC-CChhHHHhHHHHHHhhcCCC-CCccEEEccCCCCCh
Q 012930          342 SLQSLR-LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERC-NPLVELYLENCELSG  418 (453)
Q Consensus       342 ~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~l~~~-~~L~~L~L~~n~l~~  418 (453)
                      .+++|+ +|++++|+++.     ++......++|+.|++++|+ ++.      +|.  ..+..+ ++|++|++++|+++.
T Consensus       153 ~l~~L~~~L~l~~n~l~~-----i~~~~~~~~~L~~L~L~~n~~l~~------i~~--~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          153 GLCNETLTLKLYNNGFTS-----VQGYAFNGTKLDAVYLNKNKYLTV------IDK--DAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             TTBSSEEEEECCSCCCCE-----ECTTTTTTCEEEEEECTTCTTCCE------ECT--TTTTTCSBCCSEEECTTCCCCC
T ss_pred             chhcceeEEEcCCCCCcc-----cCHhhcCCCCCCEEEcCCCCCccc------CCH--HHhhccccCCcEEECCCCcccc
Confidence            678888 99999998885     44433334789999999994 876      432  446677 889999999998876


Q ss_pred             hhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930          419 RGVSQLLDTLSTLRRPPTSLSIADNN  444 (453)
Q Consensus       419 ~~~~~l~~~l~~~~~~L~~L~Ls~N~  444 (453)
                      .     +..  . -+.|+.|+++++.
T Consensus       220 l-----~~~--~-~~~L~~L~l~~~~  237 (239)
T 2xwt_C          220 L-----PSK--G-LEHLKELIARNTW  237 (239)
T ss_dssp             C-----CCT--T-CTTCSEEECTTC-
T ss_pred             C-----Chh--H-hccCceeeccCcc
Confidence            3     222  2 2348888888763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.59  E-value=4.9e-16  Score=137.98  Aligned_cols=130  Identities=21%  Similarity=0.273  Sum_probs=77.0

Q ss_pred             CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930          247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  326 (453)
Q Consensus       247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  326 (453)
                      +++|++|++++|.++.         + ..+..+++|++|++++|.+++..+..+     ..+++|++|++++|.+++..+
T Consensus        65 l~~L~~L~l~~n~~~~---------~-~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~i~~~~~  129 (197)
T 4ezg_A           65 AHNIKDLTINNIHATN---------Y-NPISGLSNLERLRIMGKDVTSDKIPNL-----SGLTSLTLLDISHSAHDDSIL  129 (197)
T ss_dssp             CTTCSEEEEESCCCSC---------C-GGGTTCTTCCEEEEECTTCBGGGSCCC-----TTCTTCCEEECCSSBCBGGGH
T ss_pred             CCCCCEEEccCCCCCc---------c-hhhhcCCCCCEEEeECCccCcccChhh-----cCCCCCCEEEecCCccCcHhH
Confidence            3556666666665443         1 245566677777777776665444433     335667777777777665322


Q ss_pred             ccCcCchHHhhcCCCCCCcccEEEecCCC-CChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930          327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNN-LCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  405 (453)
Q Consensus       327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~  405 (453)
                              ..+.   .+++|++|++++|. +++     ++ .+..+++|+.|++++|.+++      ++    .+..+++
T Consensus       130 --------~~l~---~l~~L~~L~L~~n~~i~~-----~~-~l~~l~~L~~L~l~~n~i~~------~~----~l~~l~~  182 (197)
T 4ezg_A          130 --------TKIN---TLPKVNSIDLSYNGAITD-----IM-PLKTLPELKSLNIQFDGVHD------YR----GIEDFPK  182 (197)
T ss_dssp             --------HHHT---TCSSCCEEECCSCTBCCC-----CG-GGGGCSSCCEEECTTBCCCC------CT----TGGGCSS
T ss_pred             --------HHHh---hCCCCCEEEccCCCCccc-----cH-hhcCCCCCCEEECCCCCCcC------hH----HhccCCC
Confidence                    4444   55677777777776 664     33 46667777777777777766      32    2445567


Q ss_pred             ccEEEccCCCCCh
Q 012930          406 LVELYLENCELSG  418 (453)
Q Consensus       406 L~~L~L~~n~l~~  418 (453)
                      |++|++++|+|++
T Consensus       183 L~~L~l~~N~i~~  195 (197)
T 4ezg_A          183 LNQLYAFSQTIGG  195 (197)
T ss_dssp             CCEEEECBC----
T ss_pred             CCEEEeeCcccCC
Confidence            7777777777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.58  E-value=4.8e-16  Score=161.28  Aligned_cols=197  Identities=18%  Similarity=0.075  Sum_probs=133.3

Q ss_pred             cccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          165 HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       165 ~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      ..++.|++++|.+..++.   ..++|++|+|++|.+....        ..+++|++|+|++|.++....           
T Consensus        61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp--------~~l~~L~~L~Ls~N~l~~l~~-----------  118 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP--------VLPPGLLELSIFSNPLTHLPA-----------  118 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCC--------CCCTTCCEEEECSCCCCCCCC-----------
T ss_pred             CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCC--------CCCCCCCEEECcCCcCCCCCC-----------
Confidence            478999999998876665   5689999999999865321        267899999999998875322           


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                       .+.+|+.|++++|.++..         +.   .+++|++|+|++|.+++ .+.        ...+|+.|++++|.+++ 
T Consensus       119 -~l~~L~~L~L~~N~l~~l---------p~---~l~~L~~L~Ls~N~l~~-l~~--------~~~~L~~L~L~~N~l~~-  175 (622)
T 3g06_A          119 -LPSGLCKLWIFGNQLTSL---------PV---LPPGLQELSVSDNQLAS-LPA--------LPSELCKLWAYNNQLTS-  175 (622)
T ss_dssp             -CCTTCCEEECCSSCCSCC---------CC---CCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSC-
T ss_pred             -CCCCcCEEECCCCCCCcC---------CC---CCCCCCEEECcCCcCCC-cCC--------ccCCCCEEECCCCCCCC-
Confidence             157899999999998762         21   24889999999999876 221        25789999999999885 


Q ss_pred             ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHH---h--------------CCCCccEEeCCCCCCChh
Q 012930          325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSAL---V--------------HIPNLEILDISDNTIEDD  387 (453)
Q Consensus       325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l---~--------------~~~~L~~L~Ls~N~i~~~  387 (453)
                              +|   .   .+++|+.|++++|.++.     ++..+   .              ..++|+.|++++|.|+. 
T Consensus       176 --------l~---~---~~~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-  235 (622)
T 3g06_A          176 --------LP---M---LPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-  235 (622)
T ss_dssp             --------CC---C---CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-
T ss_pred             --------Cc---c---cCCCCcEEECCCCCCCC-----CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-
Confidence                    22   1   34677788888887765     22211   0              11445555555555554 


Q ss_pred             HHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930          388 GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  446 (453)
Q Consensus       388 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  446 (453)
                           +|      ..+++|++|+|++|.|+.     ++.   . .++|++|+|++|.|+
T Consensus       236 -----lp------~~l~~L~~L~Ls~N~L~~-----lp~---~-~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          236 -----LP------VLPSELKELMVSGNRLTS-----LPM---L-PSGLLSLSVYRNQLT  274 (622)
T ss_dssp             -----CC------CCCTTCCEEECCSSCCSC-----CCC---C-CTTCCEEECCSSCCC
T ss_pred             -----CC------CCCCcCcEEECCCCCCCc-----CCc---c-cccCcEEeCCCCCCC
Confidence                 32      223566666666666665     222   1 344777777777766

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.58  E-value=6.6e-17  Score=148.15  Aligned_cols=181  Identities=14%  Similarity=0.140  Sum_probs=137.1

Q ss_pred             CCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCC-CCCCCchhhHHHHHHhhcCCCCccEEEcCC-CCCC
Q 012930          216 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLD  293 (453)
Q Consensus       216 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~-l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~-n~l~  293 (453)
                      ++|++|++++|.++......+..        +++|++|++++|. ++.        ..+..+.++++|++|++++ |.+.
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~--------l~~L~~L~l~~n~~l~~--------i~~~~f~~l~~L~~L~l~~~n~l~   94 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSN--------LPNISRIYVSIDVTLQQ--------LESHSFYNLSKVTHIEIRNTRNLT   94 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTT--------CTTCCEEEEECCSSCCE--------ECTTTEESCTTCCEEEEEEETTCC
T ss_pred             CcccEEEEeCCcceEECHHHccC--------CCCCcEEeCCCCCCcce--------eCHhHcCCCcCCcEEECCCCCCee
Confidence            47999999999998766555543        5899999999997 766        2234678899999999998 9988


Q ss_pred             hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCccc---EEEecCC-CCChhhHHHHHHHHh
Q 012930          294 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR---LLNLRGN-NLCKADARDLGSALV  369 (453)
Q Consensus       294 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~---~L~L~~n-~l~~~~~~~l~~~l~  369 (453)
                      ...+..     +..+++|++|++++|.+++         +|. +.   .+++|+   +|++++| .++.    ..+..+.
T Consensus        95 ~i~~~~-----f~~l~~L~~L~l~~n~l~~---------lp~-~~---~l~~L~~L~~L~l~~N~~l~~----i~~~~~~  152 (239)
T 2xwt_C           95 YIDPDA-----LKELPLLKFLGIFNTGLKM---------FPD-LT---KVYSTDIFFILEITDNPYMTS----IPVNAFQ  152 (239)
T ss_dssp             EECTTS-----EECCTTCCEEEEEEECCCS---------CCC-CT---TCCBCCSEEEEEEESCTTCCE----ECTTTTT
T ss_pred             EcCHHH-----hCCCCCCCEEeCCCCCCcc---------ccc-cc---cccccccccEEECCCCcchhh----cCccccc
Confidence            633222     3457899999999999986         223 34   455565   9999999 9986    2234578


Q ss_pred             CCCCcc-EEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCC-CChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          370 HIPNLE-ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE-LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       370 ~~~~L~-~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      .+++|+ .|++++|.++.      +|.  ..+.. ++|++|++++|+ ++...    ...+..+.++|+.|++++|.|++
T Consensus       153 ~l~~L~~~L~l~~n~l~~------i~~--~~~~~-~~L~~L~L~~n~~l~~i~----~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          153 GLCNETLTLKLYNNGFTS------VQG--YAFNG-TKLDAVYLNKNKYLTVID----KDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             TTBSSEEEEECCSCCCCE------ECT--TTTTT-CEEEEEECTTCTTCCEEC----TTTTTTCSBCCSEEECTTCCCCC
T ss_pred             chhcceeEEEcCCCCCcc------cCH--hhcCC-CCCCEEEcCCCCCcccCC----HHHhhccccCCcEEECCCCcccc
Confidence            899999 99999999986      552  23344 799999999995 88741    23444421569999999999985

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.58  E-value=6.8e-16  Score=158.30  Aligned_cols=184  Identities=20%  Similarity=0.179  Sum_probs=135.8

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.++++++.+..++..+.  ++|+.|+|++|.+....        ..+++|++|+|++|.|+.. +. +         
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~Ls~N~l~~i-p~-l---------  118 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP--------ELPASLEYLDACDNRLSTL-PE-L---------  118 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCC-CC-C---------
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc--------cccCCCCEEEccCCCCCCc-ch-h---------
Confidence            57777777777666555442  78999999999876321        3568999999999988862 22 2         


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                       ..+|+.|++++|.++.         ++.   .+++|+.|+|++|.+++ .+.        .+++|++|+|++|.+++ .
T Consensus       119 -~~~L~~L~Ls~N~l~~---------lp~---~l~~L~~L~Ls~N~l~~-lp~--------~l~~L~~L~Ls~N~L~~-l  175 (571)
T 3cvr_A          119 -PASLKHLDVDNNQLTM---------LPE---LPALLEYINADNNQLTM-LPE--------LPTSLEVLSVRNNQLTF-L  175 (571)
T ss_dssp             -CTTCCEEECCSSCCSC---------CCC---CCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSC-C
T ss_pred             -hcCCCEEECCCCcCCC---------CCC---cCccccEEeCCCCccCc-CCC--------cCCCcCEEECCCCCCCC-c
Confidence             2479999999999887         222   57899999999999876 333        25789999999999886 2


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCc-------cEEeCCCCCCChhHHHhHHHHHHh
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL-------EILDISDNTIEDDGIRSLIPYFVQ  398 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-------~~L~Ls~N~i~~~g~~~l~~~l~~  398 (453)
                      +        . +.     ++|++|+|++|+|+.     +|. +..  +|       +.|+|++|.|+.      +|   .
T Consensus       176 p--------~-l~-----~~L~~L~Ls~N~L~~-----lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~------lp---~  224 (571)
T 3cvr_A          176 P--------E-LP-----ESLEALDVSTNLLES-----LPA-VPV--RNHHSEETEIFFRCRENRITH------IP---E  224 (571)
T ss_dssp             C--------C-CC-----TTCCEEECCSSCCSS-----CCC-CC----------CCEEEECCSSCCCC------CC---G
T ss_pred             c--------h-hh-----CCCCEEECcCCCCCc-----hhh-HHH--hhhcccccceEEecCCCccee------cC---H
Confidence            2        3 22     789999999999985     554 332  56       999999999986      66   4


Q ss_pred             hcCCCCCccEEEccCCCCChhhHHHH
Q 012930          399 ASERCNPLVELYLENCELSGRGVSQL  424 (453)
Q Consensus       399 ~l~~~~~L~~L~L~~n~l~~~~~~~l  424 (453)
                      .+..+++|+.|+|++|.|+......+
T Consensus       225 ~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          225 NILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             GGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             HHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            45568899999999999988644333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.57  E-value=1.5e-15  Score=152.43  Aligned_cols=98  Identities=14%  Similarity=0.035  Sum_probs=48.8

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.++++++....++..   ..+|++|++++|.+... +     .+..+++|++|++++|.+++..         ..  
T Consensus       154 ~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l-~-----~~~~l~~L~~L~l~~N~l~~l~---------~~--  213 (454)
T 1jl5_A          154 FLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL-P-----ELQNLPFLTAIYADNNSLKKLP---------DL--  213 (454)
T ss_dssp             TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC-C-----CCTTCTTCCEEECCSSCCSSCC---------CC--
T ss_pred             CCCEEECCCCcCcccCCC---cccccEEECcCCcCCcC-c-----cccCCCCCCEEECCCCcCCcCC---------CC--
Confidence            456666666655443321   24666666666664432 1     1345566666666666555310         00  


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCCh
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR  294 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~  294 (453)
                       ..+|++|++++|.+..         ++ .+..+++|++|++++|++.+
T Consensus       214 -~~~L~~L~l~~n~l~~---------lp-~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          214 -PLSLESIVAGNNILEE---------LP-ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             -CTTCCEEECCSSCCSS---------CC-CCTTCTTCCEEECCSSCCSS
T ss_pred             -cCcccEEECcCCcCCc---------cc-ccCCCCCCCEEECCCCcCCc
Confidence             2345555665555543         22 14455555555555555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.56  E-value=3e-16  Score=140.55  Aligned_cols=156  Identities=19%  Similarity=0.161  Sum_probs=86.9

Q ss_pred             cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930          248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  327 (453)
Q Consensus       248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  327 (453)
                      .+|++|++++|.++.        .....+..+++|++|++++|++.+..+..     +..+++|++|++++|.+++..+ 
T Consensus        28 ~~l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~-   93 (208)
T 2o6s_A           28 AQTTYLDLETNSLKS--------LPNGVFDELTSLTQLYLGGNKLQSLPNGV-----FNKLTSLTYLNLSTNQLQSLPN-   93 (208)
T ss_dssp             TTCSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT-
T ss_pred             CCCcEEEcCCCccCc--------CChhhhcccccCcEEECCCCccCccChhh-----cCCCCCcCEEECCCCcCCccCH-
Confidence            445666666666554        22233455666666666666665422111     2335667777777776664222 


Q ss_pred             cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc
Q 012930          328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV  407 (453)
Q Consensus       328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~  407 (453)
                             ..+.   .+++|++|++++|+++.    ..+..+..+++|+.|++++|.+++      ++.  ..+..+++|+
T Consensus        94 -------~~~~---~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~------~~~--~~~~~l~~L~  151 (208)
T 2o6s_A           94 -------GVFD---KLTQLKELALNTNQLQS----LPDGVFDKLTQLKDLRLYQNQLKS------VPD--GVFDRLTSLQ  151 (208)
T ss_dssp             -------TTTT---TCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCC
T ss_pred             -------hHhc---CccCCCEEEcCCCcCcc----cCHhHhccCCcCCEEECCCCccce------eCH--HHhccCCCcc
Confidence                   1222   45667777777776664    122335566677777777776664      221  2345566777


Q ss_pred             EEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930          408 ELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN  451 (453)
Q Consensus       408 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  451 (453)
                      +|++++|.++..            .+.|+.|+++.|.+++.+|.
T Consensus       152 ~L~l~~N~~~~~------------~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          152 YIWLHDNPWDCT------------CPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             EEECCSCCBCCC------------TTTTHHHHHHHHHCTTTBBC
T ss_pred             EEEecCCCeecC------------CCCHHHHHHHHHhCCceeec
Confidence            777777765542            22366666666666665553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.56  E-value=3.1e-15  Score=154.91  Aligned_cols=171  Identities=22%  Similarity=0.182  Sum_probs=107.9

Q ss_pred             cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCc
Q 012930          186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  265 (453)
Q Consensus       186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~  265 (453)
                      .+.+|+.|++++|.+....      .+..+++|++|+|++|.|++..+  +..        +++|+.|+|++|.+..   
T Consensus        41 ~L~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~~~~--l~~--------l~~L~~L~Ls~N~l~~---  101 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP--LTN--------LKNLGWLFLDENKIKD---  101 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCCCGG--GGG--------CTTCCEEECCSSCCCC---
T ss_pred             cCCCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCCChh--hcc--------CCCCCEEECcCCCCCC---
Confidence            3456666777766644321      13466777777777777765443  221        4677777777777665   


Q ss_pred             hhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930          266 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  345 (453)
Q Consensus       266 ~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~  345 (453)
                            ++ .+..+++|++|+|++|.+.+. + .     +..+++|+.|+|++|.+++.          ..+.   .+++
T Consensus       102 ------l~-~l~~l~~L~~L~Ls~N~l~~l-~-~-----l~~l~~L~~L~Ls~N~l~~l----------~~l~---~l~~  154 (605)
T 1m9s_A          102 ------LS-SLKDLKKLKSLSLEHNGISDI-N-G-----LVHLPQLESLYLGNNKITDI----------TVLS---RLTK  154 (605)
T ss_dssp             ------CT-TSTTCTTCCEEECTTSCCCCC-G-G-----GGGCTTCSEEECCSSCCCCC----------GGGG---SCTT
T ss_pred             ------Ch-hhccCCCCCEEEecCCCCCCC-c-c-----ccCCCccCEEECCCCccCCc----------hhhc---ccCC
Confidence                  11 456677777777777777652 1 1     23467777777777777652          2333   5667


Q ss_pred             ccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          346 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       346 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      |+.|+|++|.|++     ++. +..+++|+.|+|++|.|++      ++    .+..+++|+.|+|++|.++.
T Consensus       155 L~~L~Ls~N~l~~-----~~~-l~~l~~L~~L~Ls~N~i~~------l~----~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          155 LDTLSLEDNQISD-----IVP-LAGLTKLQNLYLSKNHISD------LR----ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CSEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCB------CG----GGTTCTTCSEEECCSEEEEC
T ss_pred             CCEEECcCCcCCC-----chh-hccCCCCCEEECcCCCCCC------Ch----HHccCCCCCEEEccCCcCcC
Confidence            7777777777775     222 6677777777777777776      32    25566777777777776655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.56  E-value=2.3e-15  Score=155.96  Aligned_cols=173  Identities=20%  Similarity=0.253  Sum_probs=139.8

Q ss_pred             cCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCC
Q 012930          214 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD  293 (453)
Q Consensus       214 ~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~  293 (453)
                      .+++|+.|++++|.+....  .+.    .    +++|+.|+|++|.+..         ++. +..+++|+.|+|++|.+.
T Consensus        41 ~L~~L~~L~l~~n~i~~l~--~l~----~----l~~L~~L~Ls~N~l~~---------~~~-l~~l~~L~~L~Ls~N~l~  100 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQ--GIQ----Y----LPNVTKLFLNGNKLTD---------IKP-LTNLKNLGWLFLDENKIK  100 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCT--TGG----G----CTTCCEEECTTSCCCC---------CGG-GGGCTTCCEEECCSSCCC
T ss_pred             cCCCCCEEECcCCCCCCCh--HHc----c----CCCCCEEEeeCCCCCC---------Chh-hccCCCCCEEECcCCCCC
Confidence            4578999999999887642  222    2    6899999999999987         222 789999999999999998


Q ss_pred             hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC
Q 012930          294 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN  373 (453)
Q Consensus       294 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  373 (453)
                      + .+ .     +..+++|+.|+|++|.+.+.          ..+.   .+++|+.|+|++|.+++     + ..+..+++
T Consensus       101 ~-l~-~-----l~~l~~L~~L~Ls~N~l~~l----------~~l~---~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~  154 (605)
T 1m9s_A          101 D-LS-S-----LKDLKKLKSLSLEHNGISDI----------NGLV---HLPQLESLYLGNNKITD-----I-TVLSRLTK  154 (605)
T ss_dssp             C-CT-T-----STTCTTCCEEECTTSCCCCC----------GGGG---GCTTCSEEECCSSCCCC-----C-GGGGSCTT
T ss_pred             C-Ch-h-----hccCCCCCEEEecCCCCCCC----------cccc---CCCccCEEECCCCccCC-----c-hhhcccCC
Confidence            7 22 2     35579999999999999862          2344   67899999999999997     3 56889999


Q ss_pred             ccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930          374 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       374 L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                      |+.|+|++|.|++      +++    +..+++|+.|+|++|.|++.      ..+..+ ++|+.|+|++|.+.+..
T Consensus       155 L~~L~Ls~N~l~~------~~~----l~~l~~L~~L~Ls~N~i~~l------~~l~~l-~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          155 LDTLSLEDNQISD------IVP----LAGLTKLQNLYLSKNHISDL------RALAGL-KNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CSEEECCSSCCCC------CGG----GTTCTTCCEEECCSSCCCBC------GGGTTC-TTCSEEECCSEEEECCC
T ss_pred             CCEEECcCCcCCC------chh----hccCCCCCEEECcCCCCCCC------hHHccC-CCCCEEEccCCcCcCCc
Confidence            9999999999987      332    67789999999999999983      246664 56999999999987753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.55  E-value=2.3e-15  Score=140.00  Aligned_cols=39  Identities=33%  Similarity=0.577  Sum_probs=18.4

Q ss_pred             CCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930          342 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       342 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  386 (453)
                      .+++|++|++++|++++     ++ .+..+++|+.|++++|.|++
T Consensus       126 ~l~~L~~L~Ls~N~i~~-----~~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          126 HLKNLEILSIRNNKLKS-----IV-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             TCTTCCEEECTTSCCCB-----CG-GGGGCTTCCEEECTTSCCCB
T ss_pred             CcccccEEECCCCcCCC-----Ch-HHccCCCCCEEECCCCcCcc
Confidence            34445555555555543     11 34444555555555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.55  E-value=1.6e-15  Score=155.62  Aligned_cols=35  Identities=11%  Similarity=0.261  Sum_probs=18.7

Q ss_pred             cEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930          347 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       347 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  386 (453)
                      ++|+|++|+|+.     +|..+..+++|+.|+|++|++++
T Consensus       210 ~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          210 IFFRCRENRITH-----IPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             EEEECCSSCCCC-----CCGGGGGSCTTEEEECCSSSCCH
T ss_pred             eEEecCCCccee-----cCHHHhcCCCCCEEEeeCCcCCC
Confidence            555555555553     44444445555555555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.54  E-value=2.2e-15  Score=151.30  Aligned_cols=218  Identities=17%  Similarity=0.098  Sum_probs=148.4

Q ss_pred             hhccCCceeeeehhhh------ccccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEE
Q 012930          148 HLACDYSKLSYHCQQF------GHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASL  221 (453)
Q Consensus       148 ~l~~~l~~l~l~~~~~------~~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L  221 (453)
                      |....++.+.++...+      ...++.++++++....++.   ...+|++|++++|.+....        ...++|++|
T Consensus        68 c~~~~l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~l~--------~~~~~L~~L  136 (454)
T 1jl5_A           68 CLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKALS--------DLPPLLEYL  136 (454)
T ss_dssp             HHHHTCSEEECTTSCCSCCCSCCTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC--------SCCTTCCEE
T ss_pred             hhccCCCEEEecCCccccCCCCcCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCccc--------CCCCCCCEE
Confidence            3334455555555422      2367888888877765443   2378888888888765321        112588888


Q ss_pred             EcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHH
Q 012930          222 EFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF  301 (453)
Q Consensus       222 ~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~  301 (453)
                      ++++|.+++. + .+..        +.+|++|++++|.++...         .   ..++|++|++++|.+.+ .+ .  
T Consensus       137 ~L~~n~l~~l-p-~~~~--------l~~L~~L~l~~N~l~~lp---------~---~~~~L~~L~L~~n~l~~-l~-~--  190 (454)
T 1jl5_A          137 GVSNNQLEKL-P-ELQN--------SSFLKIIDVDNNSLKKLP---------D---LPPSLEFIAAGNNQLEE-LP-E--  190 (454)
T ss_dssp             ECCSSCCSSC-C-CCTT--------CTTCCEEECCSSCCSCCC---------C---CCTTCCEEECCSSCCSS-CC-C--
T ss_pred             ECcCCCCCCC-c-ccCC--------CCCCCEEECCCCcCcccC---------C---CcccccEEECcCCcCCc-Cc-c--
Confidence            8888888752 2 2222        578888888888877521         1   12488888888888876 33 2  


Q ss_pred             HHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCC
Q 012930          302 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISD  381 (453)
Q Consensus       302 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  381 (453)
                         +..+++|++|++++|.+++.         |.      ...+|++|++++|.++.     +| .+..+++|+.|++++
T Consensus       191 ---~~~l~~L~~L~l~~N~l~~l---------~~------~~~~L~~L~l~~n~l~~-----lp-~~~~l~~L~~L~l~~  246 (454)
T 1jl5_A          191 ---LQNLPFLTAIYADNNSLKKL---------PD------LPLSLESIVAGNNILEE-----LP-ELQNLPFLTTIYADN  246 (454)
T ss_dssp             ---CTTCTTCCEEECCSSCCSSC---------CC------CCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCS
T ss_pred             ---ccCCCCCCEEECCCCcCCcC---------CC------CcCcccEEECcCCcCCc-----cc-ccCCCCCCCEEECCC
Confidence               24578888999988888751         11      12578999999998884     55 377889999999999


Q ss_pred             CCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          382 NTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       382 N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      |++++      +|   .   ..++|++|++++|+++..     +.    ..++|++|++++|.+++
T Consensus       247 N~l~~------l~---~---~~~~L~~L~l~~N~l~~l-----~~----~~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          247 NLLKT------LP---D---LPPSLEALNVRDNYLTDL-----PE----LPQSLTFLDVSENIFSG  291 (454)
T ss_dssp             SCCSS------CC---S---CCTTCCEEECCSSCCSCC-----CC----CCTTCCEEECCSSCCSE
T ss_pred             CcCCc------cc---c---cccccCEEECCCCccccc-----Cc----ccCcCCEEECcCCccCc
Confidence            99886      44   1   126889999999988762     22    12458888888888876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.49  E-value=1.7e-14  Score=131.22  Aligned_cols=146  Identities=21%  Similarity=0.215  Sum_probs=101.3

Q ss_pred             cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930          248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  327 (453)
Q Consensus       248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  327 (453)
                      .+|++|++++|.++.        ..+..+..+++|++|+|++|.+.. .+...    +..+++|+.|+|++|.+++..+ 
T Consensus        40 ~~L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~----~~~l~~L~~L~Ls~N~l~~l~~-  105 (229)
T 3e6j_A           40 TNAQILYLHDNQITK--------LEPGVFDSLINLKELYLGSNQLGA-LPVGV----FDSLTQLTVLDLGTNQLTVLPS-  105 (229)
T ss_dssp             TTCSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCCC-CCTTT----TTTCTTCCEEECCSSCCCCCCT-
T ss_pred             CCCCEEEcCCCccCc--------cCHHHhhCccCCcEEECCCCCCCC-cChhh----cccCCCcCEEECCCCcCCccCh-
Confidence            557777777777776        334556677888888888888765 22211    2446888888888888876322 


Q ss_pred             cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc
Q 012930          328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV  407 (453)
Q Consensus       328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~  407 (453)
                             ..+.   .+++|++|+|++|+|+.     +|..+..+++|+.|+|++|+|+.      ++.  ..+..+++|+
T Consensus       106 -------~~~~---~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~  162 (229)
T 3e6j_A          106 -------AVFD---RLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKS------IPH--GAFDRLSSLT  162 (229)
T ss_dssp             -------TTTT---TCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCC------CCT--TTTTTCTTCC
T ss_pred             -------hHhC---cchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCc------cCH--HHHhCCCCCC
Confidence                   2233   66888888888888884     67777888888888888888876      432  4467778888


Q ss_pred             EEEccCCCCChhh--HHHHHHHHhc
Q 012930          408 ELYLENCELSGRG--VSQLLDTLST  430 (453)
Q Consensus       408 ~L~L~~n~l~~~~--~~~l~~~l~~  430 (453)
                      .|++++|.++...  ...+...+..
T Consensus       163 ~L~l~~N~~~c~c~~~~~l~~~~~~  187 (229)
T 3e6j_A          163 HAYLFGNPWDCECRDIMYLRNWVAD  187 (229)
T ss_dssp             EEECTTSCBCTTBGGGHHHHHHHHH
T ss_pred             EEEeeCCCccCCcchhHHHHHHHHh
Confidence            8888888877542  3344444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.49  E-value=1.5e-13  Score=133.05  Aligned_cols=199  Identities=17%  Similarity=0.149  Sum_probs=135.2

Q ss_pred             hcCCCccEEEcCCCCCCh-----hHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEc
Q 012930          213 QNSETLASLEFLHCKLSP-----SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKL  287 (453)
Q Consensus       213 ~~~~~L~~L~L~~n~l~~-----~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L  287 (453)
                      ..+++|+.|.+.......     .....+...+..    +++|+.|++++|.-..         ++. + .+++|++|+|
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~----~P~L~~L~L~g~~~l~---------l~~-~-~~~~L~~L~L  200 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDA----MPLLNNLKIKGTNNLS---------IGK-K-PRPNLKSLEI  200 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHT----CTTCCEEEEECCBTCB---------CCS-C-BCTTCSEEEE
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhc----CCCCcEEEEeCCCCce---------ecc-c-cCCCCcEEEE
Confidence            356788888876543211     000011122222    4789999998772111         111 2 3789999999


Q ss_pred             CCCCCChhHHHHHHHHHhhCCCCCCEEEcCCC--CCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHH
Q 012930          288 RHCHLDRDFGRMVFSSLLEASSSLSILDLSGN--SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG  365 (453)
Q Consensus       288 ~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~  365 (453)
                      ..|.+.+..+..++.   ..+++|+.|+|+.+  ...+.   .+...+...+.. ..+++|++|+|++|.+++.++..+.
T Consensus       201 ~~~~l~~~~l~~l~~---~~lp~L~~L~L~~~~~~~~~~---~~~~~l~~~l~~-~~~p~Lr~L~L~~~~i~~~~~~~la  273 (362)
T 2ra8_A          201 ISGGLPDSVVEDILG---SDLPNLEKLVLYVGVEDYGFD---GDMNVFRPLFSK-DRFPNLKWLGIVDAEEQNVVVEMFL  273 (362)
T ss_dssp             ECSBCCHHHHHHHHH---SBCTTCCEEEEECBCGGGTCC---SCGGGTGGGSCT-TTCTTCCEEEEESCTTHHHHHHHHH
T ss_pred             ecCCCChHHHHHHHH---ccCCCCcEEEEeccccccccc---hhHHHHHHHHhc-CCCCCcCEEeCCCCCCchHHHHHHH
Confidence            999998887777653   34799999999642  22211   111112222221 2578999999999999987766665


Q ss_pred             HHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930          366 SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN  444 (453)
Q Consensus       366 ~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  444 (453)
                      .+ ..+++|++|+|+.|.|++.|+.++..    .+.++++|+.|+|++|.|++.++..+.+++      ...++++.++
T Consensus       274 ~a-~~~~~L~~LdLs~n~L~d~G~~~L~~----~L~~l~~L~~L~L~~n~i~d~~~~~l~~al------g~~~~~~~~~  341 (362)
T 2ra8_A          274 ES-DILPQLETMDISAGVLTDEGARLLLD----HVDKIKHLKFINMKYNYLSDEMKKELQKSL------PMKIDVSDSQ  341 (362)
T ss_dssp             HC-SSGGGCSEEECCSSCCBHHHHHHHHT----THHHHTTCSEEECCSBBCCHHHHHHHHHHC------CSEEECCSBC
T ss_pred             hC-ccCCCCCEEECCCCCCChHHHHHHHh----hcccCCcceEEECCCCcCCHHHHHHHHHHc------CCEEEecCCc
Confidence            43 46889999999999999999888763    345668999999999999999888877765      3558998886

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=5.8e-16  Score=159.37  Aligned_cols=125  Identities=23%  Similarity=0.262  Sum_probs=88.6

Q ss_pred             CccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhh
Q 012930          281 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD  360 (453)
Q Consensus       281 ~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~  360 (453)
                      .|+.|+|++|.+++ .+. +     ..+++|+.|+|++|.++.         +|..++   .+++|++|+|++|+|+.  
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~-----~~l~~L~~L~Ls~N~l~~---------lp~~~~---~l~~L~~L~Ls~N~l~~--  500 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-L-----EQLLLVTHLDLSHNRLRA---------LPPALA---ALRCLEVLQASDNALEN--  500 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-G-----GGGTTCCEEECCSSCCCC---------CCGGGG---GCTTCCEEECCSSCCCC--
T ss_pred             CceEEEecCCCCCC-CcC-c-----cccccCcEeecCcccccc---------cchhhh---cCCCCCEEECCCCCCCC--
Confidence            58888888888876 442 2     446888888988888874         446666   66888889999988886  


Q ss_pred             HHHHHHHHhCCCCccEEeCCCCCCChhHHHhHH-HHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEE
Q 012930          361 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLI-PYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLS  439 (453)
Q Consensus       361 ~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~-~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~  439 (453)
                         +| .+..+++|+.|+|++|.|++.     . |   ..+..+++|+.|+|++|+++.... .....+..+ ++|+.|+
T Consensus       501 ---lp-~l~~l~~L~~L~Ls~N~l~~~-----~~p---~~l~~l~~L~~L~L~~N~l~~~~~-~~~~l~~~l-p~L~~L~  566 (567)
T 1dce_A          501 ---VD-GVANLPRLQELLLCNNRLQQS-----AAI---QPLVSCPRLVLLNLQGNSLCQEEG-IQERLAEML-PSVSSIL  566 (567)
T ss_dssp             ---CG-GGTTCSSCCEEECCSSCCCSS-----STT---GGGGGCTTCCEEECTTSGGGGSSS-CTTHHHHHC-TTCSEEE
T ss_pred             ---Cc-ccCCCCCCcEEECCCCCCCCC-----CCc---HHHhcCCCCCEEEecCCcCCCCcc-HHHHHHHHC-cccCccC
Confidence               56 688888899999998888772     1 5   557777888999999988765310 011222222 3388886


Q ss_pred             C
Q 012930          440 I  440 (453)
Q Consensus       440 L  440 (453)
                      +
T Consensus       567 l  567 (567)
T 1dce_A          567 T  567 (567)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.48  E-value=4.7e-15  Score=144.47  Aligned_cols=178  Identities=20%  Similarity=0.165  Sum_probs=111.6

Q ss_pred             cEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHH
Q 012930          191 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV  270 (453)
Q Consensus       191 ~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~  270 (453)
                      +.++++++.+......       -.+.++.|+|++|.|+......+..       .+.+|+.|++++|.++.        
T Consensus        21 ~~l~c~~~~l~~iP~~-------~~~~l~~L~Ls~N~l~~l~~~~~~~-------~l~~L~~L~L~~N~i~~--------   78 (361)
T 2xot_A           21 NILSCSKQQLPNVPQS-------LPSYTALLDLSHNNLSRLRAEWTPT-------RLTNLHSLLLSHNHLNF--------   78 (361)
T ss_dssp             TEEECCSSCCSSCCSS-------CCTTCSEEECCSSCCCEECTTSSSS-------CCTTCCEEECCSSCCCE--------
T ss_pred             CEEEeCCCCcCccCcc-------CCCCCCEEECCCCCCCccChhhhhh-------cccccCEEECCCCcCCc--------
Confidence            5678887775543211       2245788888888887654433320       15778888888888776        


Q ss_pred             HHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEE
Q 012930          271 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN  350 (453)
Q Consensus       271 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~  350 (453)
                      ..+..+..+++|++|+|++|++....+..     +..+++|++|+|++|.|++..+        ..+.   .+++|++|+
T Consensus        79 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~N~i~~~~~--------~~~~---~l~~L~~L~  142 (361)
T 2xot_A           79 ISSEAFVPVPNLRYLDLSSNHLHTLDEFL-----FSDLQALEVLLLYNNHIVVVDR--------NAFE---DMAQLQKLY  142 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSCCCEECT--------TTTT---TCTTCCEEE
T ss_pred             cChhhccCCCCCCEEECCCCcCCcCCHHH-----hCCCcCCCEEECCCCcccEECH--------HHhC---CcccCCEEE
Confidence            23345667788888888888876632222     2446788888888888775333        3333   667888888


Q ss_pred             ecCCCCChhhHHHHHHHH----hCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC--ccEEEccCCCCChh
Q 012930          351 LRGNNLCKADARDLGSAL----VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP--LVELYLENCELSGR  419 (453)
Q Consensus       351 L~~n~l~~~~~~~l~~~l----~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~--L~~L~L~~n~l~~~  419 (453)
                      |++|+|+.     ++..+    ..+++|+.|+|++|+|+.-..        ..+..++.  ++.|+|++|.+...
T Consensus       143 L~~N~l~~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~--------~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          143 LSQNQISR-----FPVELIKDGNKLPKLMLLDLSSNKLKKLPL--------TDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCSSCCCS-----CCGGGTC----CTTCCEEECCSSCCCCCCH--------HHHHHSCHHHHTTEECCSSCEECC
T ss_pred             CCCCcCCe-----eCHHHhcCcccCCcCCEEECCCCCCCccCH--------HHhhhccHhhcceEEecCCCccCC
Confidence            88888775     33322    457788888888888776221        11222233  46788888877653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.48  E-value=1.5e-14  Score=131.52  Aligned_cols=157  Identities=18%  Similarity=0.156  Sum_probs=121.1

Q ss_pred             cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930          248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  327 (453)
Q Consensus       248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  327 (453)
                      |.-+.++.+++.++.         ++..  -.++|++|+|++|.+.+..+..+     ..+++|++|+|++|.++...+ 
T Consensus        19 Cs~~~v~c~~~~l~~---------ip~~--~~~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~i~~-   81 (229)
T 3e6j_A           19 CSGTTVDCRSKRHAS---------VPAG--IPTNAQILYLHDNQITKLEPGVF-----DSLINLKELYLGSNQLGALPV-   81 (229)
T ss_dssp             EETTEEECTTSCCSS---------CCSC--CCTTCSEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCT-
T ss_pred             EeCCEeEccCCCcCc---------cCCC--CCCCCCEEEcCCCccCccCHHHh-----hCccCCcEEECCCCCCCCcCh-
Confidence            556788888888776         2222  23789999999999988545433     457999999999999976322 


Q ss_pred             cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc
Q 012930          328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV  407 (453)
Q Consensus       328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~  407 (453)
                             ..+.   .+++|++|+|++|+|+.    ..+..+..+++|+.|+|++|.|+.      +|   ..+..+++|+
T Consensus        82 -------~~~~---~l~~L~~L~Ls~N~l~~----l~~~~~~~l~~L~~L~Ls~N~l~~------lp---~~~~~l~~L~  138 (229)
T 3e6j_A           82 -------GVFD---SLTQLTVLDLGTNQLTV----LPSAVFDRLVHLKELFMCCNKLTE------LP---RGIERLTHLT  138 (229)
T ss_dssp             -------TTTT---TCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCS------CC---TTGGGCTTCS
T ss_pred             -------hhcc---cCCCcCEEECCCCcCCc----cChhHhCcchhhCeEeccCCcccc------cC---cccccCCCCC
Confidence                   2233   77999999999999996    233457889999999999999996      66   5567889999


Q ss_pred             EEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930          408 ELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       408 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                      +|+|++|+|+..    ....+..+ ++|+.|++++|.+....
T Consensus       139 ~L~L~~N~l~~~----~~~~~~~l-~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          139 HLALDQNQLKSI----PHGAFDRL-SSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             EEECCSSCCCCC----CTTTTTTC-TTCCEEECTTSCBCTTB
T ss_pred             EEECCCCcCCcc----CHHHHhCC-CCCCEEEeeCCCccCCc
Confidence            999999999874    12345553 56999999999987543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.48  E-value=3e-13  Score=118.06  Aligned_cols=93  Identities=15%  Similarity=0.275  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhcCCCccEEEcCCC-CCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCc
Q 012930          204 VQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL  282 (453)
Q Consensus       204 ~~~~~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L  282 (453)
                      +...+..+..+-+.|++|+|++| .|.+.+...++++|+.+    +.|+.|+|++|.+.+.++.    .+.+.+..+++|
T Consensus        29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N----~~L~~L~L~~n~igd~ga~----alA~aL~~N~tL  100 (197)
T 1pgv_A           29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS----KHIEKFSLANTAISDSEAR----GLIELIETSPSL  100 (197)
T ss_dssp             HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC----SCCCEEECTTSCCBHHHHT----THHHHHHHCSSC
T ss_pred             HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC----CCcCEEEccCCCCChHHHH----HHHHHHhcCCcc
Confidence            33445555666778888888885 88888888888776653    4555555555555543333    344444444455


Q ss_pred             cEEEcCCCCCChhHHHHHHHHH
Q 012930          283 CSLKLRHCHLDRDFGRMVFSSL  304 (453)
Q Consensus       283 ~~L~L~~n~l~~~~~~~l~~~L  304 (453)
                      ++|+|++|.|++.+...|+++|
T Consensus       101 ~~L~L~~N~Ig~~Ga~ala~aL  122 (197)
T 1pgv_A          101 RVLNVESNFLTPELLARLLRST  122 (197)
T ss_dssp             CEEECCSSBCCHHHHHHHHHHT
T ss_pred             CeEecCCCcCCHHHHHHHHHHH
Confidence            5555555555554444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.47  E-value=1.1e-14  Score=131.65  Aligned_cols=154  Identities=18%  Similarity=0.194  Sum_probs=96.3

Q ss_pred             cEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHH
Q 012930          219 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR  298 (453)
Q Consensus       219 ~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  298 (453)
                      +++++++|.++. .+..+          ...+++|++++|.++...       ....+..+++|++|+|++|.+++..+.
T Consensus        14 ~~l~~s~n~l~~-iP~~~----------~~~~~~L~L~~N~l~~~~-------~~~~~~~l~~L~~L~L~~N~i~~i~~~   75 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI----------PQYTAELRLNNNEFTVLE-------ATGIFKKLPQLRKINFSNNKITDIEEG   75 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC----------CTTCSEEECCSSCCCEEC-------CCCCGGGCTTCCEEECCSSCCCEECTT
T ss_pred             CEeEeCCCCccc-CccCC----------CCCCCEEEcCCCcCCccC-------chhhhccCCCCCEEECCCCcCCEECHH
Confidence            467777777663 11110          245677777777776511       012355677777777777777663332


Q ss_pred             HHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEe
Q 012930          299 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILD  378 (453)
Q Consensus       299 ~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  378 (453)
                      .+     ..+++|++|+|++|.+++..+        ..+.   .+++|++|+|++|+|+.    ..+..+..+++|+.|+
T Consensus        76 ~~-----~~l~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A           76 AF-----EGASGVNEILLTSNRLENVQH--------KMFK---GLESLKTLMLRSNRITC----VGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             TT-----TTCTTCCEEECCSSCCCCCCG--------GGGT---TCSSCCEEECTTSCCCC----BCTTSSTTCTTCSEEE
T ss_pred             Hh-----CCCCCCCEEECCCCccCccCH--------hHhc---CCcCCCEEECCCCcCCe----ECHhHcCCCccCCEEE
Confidence            22     346777777777777775333        3343   56777777777777775    2355666777777777


Q ss_pred             CCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          379 ISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       379 Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      |++|.|+..     .|   ..+..+++|++|+|++|.++.
T Consensus       136 L~~N~l~~~-----~~---~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          136 LYDNQITTV-----AP---GAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CTTSCCCCB-----CT---TTTTTCTTCCEEECCSCCEEC
T ss_pred             CCCCcCCEE-----CH---HHhcCCCCCCEEEecCcCCcC
Confidence            777777662     23   446666777777777777653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.46  E-value=3.2e-14  Score=132.16  Aligned_cols=149  Identities=21%  Similarity=0.268  Sum_probs=70.6

Q ss_pred             hcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCC
Q 012930          185 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC  264 (453)
Q Consensus       185 ~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~  264 (453)
                      ..+++|+.|++++|.+....      .+..+++|++|+|++|.|++..+  +..        +++|+.|++++|.++...
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~L~~N~i~~~~~--l~~--------l~~L~~L~L~~N~l~~l~  101 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLA------GMQFFTNLKELHLSHNQISDLSP--LKD--------LTKLEELSVNRNRLKNLN  101 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG--GTT--------CSSCCEEECCSSCCSCCT
T ss_pred             hhcCcCcEEECcCCCcccch------HHhhCCCCCEEECCCCccCCChh--hcc--------CCCCCEEECCCCccCCcC
Confidence            34455555555555543221      13345555555555555554332  111        355555555555554411


Q ss_pred             chhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCC
Q 012930          265 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ  344 (453)
Q Consensus       265 ~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~  344 (453)
                               . +.. ++|++|++++|.+++. + .     +..+++|+.|++++|.+++.         + .+.   .++
T Consensus       102 ---------~-~~~-~~L~~L~L~~N~l~~~-~-~-----l~~l~~L~~L~Ls~N~i~~~---------~-~l~---~l~  150 (263)
T 1xeu_A          102 ---------G-IPS-ACLSRLFLDNNELRDT-D-S-----LIHLKNLEILSIRNNKLKSI---------V-MLG---FLS  150 (263)
T ss_dssp             ---------T-CCC-SSCCEEECCSSCCSBS-G-G-----GTTCTTCCEEECTTSCCCBC---------G-GGG---GCT
T ss_pred             ---------c-ccc-CcccEEEccCCccCCC-h-h-----hcCcccccEEECCCCcCCCC---------h-HHc---cCC
Confidence                     1 111 5555555555555541 1 1     12345555555555555531         1 222   345


Q ss_pred             cccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930          345 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       345 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  386 (453)
                      +|++|++++|++++.      ..+..+++|+.|++++|.++.
T Consensus       151 ~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          151 KLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             TCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEEC
T ss_pred             CCCEEECCCCcCcch------HHhccCCCCCEEeCCCCcccC
Confidence            555555555555541      334455555555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.46  E-value=1.6e-14  Score=130.48  Aligned_cols=153  Identities=18%  Similarity=0.145  Sum_probs=100.2

Q ss_pred             cEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHH
Q 012930          219 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR  298 (453)
Q Consensus       219 ~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  298 (453)
                      +.++.+++.++. .+..+          ..+++.|++++|.++.        ..+..+..+++|++|+|++|.+.+..+.
T Consensus        14 ~~v~c~~~~l~~-iP~~l----------~~~l~~L~l~~n~i~~--------i~~~~~~~l~~L~~L~Ls~N~i~~~~~~   74 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNL----------PETITEIRLEQNTIKV--------IPPGAFSPYKKLRRIDLSNNQISELAPD   74 (220)
T ss_dssp             TEEECTTSCCSS-CCSSC----------CTTCCEEECCSSCCCE--------ECTTSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             CEEEcCCCCcCc-CCCcc----------CcCCCEEECCCCcCCC--------cCHhHhhCCCCCCEEECCCCcCCCcCHH
Confidence            466777766652 11111          2567888888887776        2233566777888888888887764444


Q ss_pred             HHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEe
Q 012930          299 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILD  378 (453)
Q Consensus       299 ~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  378 (453)
                      .+     ..+++|++|+|++|.++...+        ..   +..+++|++|+|++|+|+.    ..+..+..+++|+.|+
T Consensus        75 ~~-----~~l~~L~~L~Ls~N~l~~l~~--------~~---f~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~  134 (220)
T 2v9t_B           75 AF-----QGLRSLNSLVLYGNKITELPK--------SL---FEGLFSLQLLLLNANKINC----LRVDAFQDLHNLNLLS  134 (220)
T ss_dssp             TT-----TTCSSCCEEECCSSCCCCCCT--------TT---TTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEE
T ss_pred             Hh-----hCCcCCCEEECCCCcCCccCH--------hH---ccCCCCCCEEECCCCCCCE----eCHHHcCCCCCCCEEE
Confidence            33     446778888888888775222        12   2356778888888888776    2345677778888888


Q ss_pred             CCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          379 ISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       379 Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      |++|.|+.      ++.  ..+..+++|++|+|++|.++.
T Consensus       135 L~~N~l~~------~~~--~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          135 LYDNKLQT------IAK--GTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCSSCCSC------CCT--TTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCcCCE------ECH--HHHhCCCCCCEEEeCCCCcCC
Confidence            88888776      331  346666778888888887644

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.45  E-value=2e-14  Score=129.85  Aligned_cols=152  Identities=18%  Similarity=0.171  Sum_probs=105.3

Q ss_pred             cEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHH
Q 012930          191 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV  270 (453)
Q Consensus       191 ~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~  270 (453)
                      +.++++++.+......       -.++|++|+|++|.|+...+..+..        +.+|+.|++++|.++.        
T Consensus        14 ~~v~c~~~~l~~iP~~-------l~~~l~~L~l~~n~i~~i~~~~~~~--------l~~L~~L~Ls~N~i~~--------   70 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTN-------LPETITEIRLEQNTIKVIPPGAFSP--------YKKLRRIDLSNNQISE--------   70 (220)
T ss_dssp             TEEECTTSCCSSCCSS-------CCTTCCEEECCSSCCCEECTTSSTT--------CTTCCEEECCSSCCCE--------
T ss_pred             CEEEcCCCCcCcCCCc-------cCcCCCEEECCCCcCCCcCHhHhhC--------CCCCCEEECCCCcCCC--------
Confidence            4677777765443211       1257888888888887655444432        4778888888888876        


Q ss_pred             HHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEE
Q 012930          271 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN  350 (453)
Q Consensus       271 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~  350 (453)
                      ..+..+.++++|++|+|++|.++. .+..+    +..+++|++|+|++|.+++..+        ..+.   .+++|++|+
T Consensus        71 ~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~----f~~l~~L~~L~L~~N~l~~~~~--------~~~~---~l~~L~~L~  134 (220)
T 2v9t_B           71 LAPDAFQGLRSLNSLVLYGNKITE-LPKSL----FEGLFSLQLLLLNANKINCLRV--------DAFQ---DLHNLNLLS  134 (220)
T ss_dssp             ECTTTTTTCSSCCEEECCSSCCCC-CCTTT----TTTCTTCCEEECCSSCCCCCCT--------TTTT---TCTTCCEEE
T ss_pred             cCHHHhhCCcCCCEEECCCCcCCc-cCHhH----ccCCCCCCEEECCCCCCCEeCH--------HHcC---CCCCCCEEE
Confidence            345667788888888888888875 33222    3446888888888888886433        3333   667888888


Q ss_pred             ecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCC
Q 012930          351 LRGNNLCKADARDLGSALVHIPNLEILDISDNTIE  385 (453)
Q Consensus       351 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  385 (453)
                      |++|+|+.    ..+..+..+++|+.|+|++|++.
T Consensus       135 L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          135 LYDNKLQT----IAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCSSCCSC----CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCcCCE----ECHHHHhCCCCCCEEEeCCCCcC
Confidence            88888886    22345777888888888888874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.45  E-value=2.1e-14  Score=129.74  Aligned_cols=152  Identities=15%  Similarity=0.138  Sum_probs=105.3

Q ss_pred             cEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHH-HHHHHhhccccCCcceeEEEccCCCCCCCCchhhH
Q 012930          191 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVE-GICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV  269 (453)
Q Consensus       191 ~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~-~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~  269 (453)
                      +.+++++|.++....       .-.+.+++|+|++|.|+...+. .+..        +++|+.|++++|.++.       
T Consensus        14 ~~l~~s~n~l~~iP~-------~~~~~~~~L~L~~N~l~~~~~~~~~~~--------l~~L~~L~L~~N~i~~-------   71 (220)
T 2v70_A           14 TTVDCSNQKLNKIPE-------HIPQYTAELRLNNNEFTVLEATGIFKK--------LPQLRKINFSNNKITD-------   71 (220)
T ss_dssp             TEEECCSSCCSSCCS-------CCCTTCSEEECCSSCCCEECCCCCGGG--------CTTCCEEECCSSCCCE-------
T ss_pred             CEeEeCCCCcccCcc-------CCCCCCCEEEcCCCcCCccCchhhhcc--------CCCCCEEECCCCcCCE-------
Confidence            578888887654221       1234678888888888765322 2222        5778888888888876       


Q ss_pred             HHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEE
Q 012930          270 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL  349 (453)
Q Consensus       270 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L  349 (453)
                       ..+..+.++++|++|+|++|.+++..+..+     ..+++|++|+|++|.+++..+        ..+.   .+++|++|
T Consensus        72 -i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L  134 (220)
T 2v70_A           72 -IEEGAFEGASGVNEILLTSNRLENVQHKMF-----KGLESLKTLMLRSNRITCVGN--------DSFI---GLSSVRLL  134 (220)
T ss_dssp             -ECTTTTTTCTTCCEEECCSSCCCCCCGGGG-----TTCSSCCEEECTTSCCCCBCT--------TSST---TCTTCSEE
T ss_pred             -ECHHHhCCCCCCCEEECCCCccCccCHhHh-----cCCcCCCEEECCCCcCCeECH--------hHcC---CCccCCEE
Confidence             233466778888888888888876433322     446888888888888886433        3333   66788888


Q ss_pred             EecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCC
Q 012930          350 NLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE  385 (453)
Q Consensus       350 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  385 (453)
                      +|++|+|+.    ..+..+..+++|+.|++++|++.
T Consensus       135 ~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          135 SLYDNQITT----VAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             ECTTSCCCC----BCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ECCCCcCCE----ECHHHhcCCCCCCEEEecCcCCc
Confidence            888888886    23567778888888888888875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.44  E-value=9.5e-16  Score=157.78  Aligned_cols=197  Identities=20%  Similarity=0.169  Sum_probs=134.0

Q ss_pred             cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCc
Q 012930          186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  265 (453)
Q Consensus       186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~  265 (453)
                      .+++|+.|+|++|.+...     +..+.++++|++|++++|......+..+.              .     +.+..   
T Consensus       347 ~~~~L~~L~Ls~n~L~~L-----p~~i~~l~~L~~L~l~~n~~l~~l~~ll~--------------~-----~~~~~---  399 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVL-----QSELESCKELQELEPENKWCLLTIILLMR--------------A-----LDPLL---  399 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHH-----HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------------H-----HCTGG---
T ss_pred             cCccceeccCChhhHHhh-----HHHHHHHHHHHHhccccchhhhhHHHHHH--------------h-----ccccc---
Confidence            456777777777775422     22234556777777755432111111110              0     01222   


Q ss_pred             hhhHHHHHHhhcCCCCccEEE-cCCCCCChhHHH------HHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhc
Q 012930          266 SSVVVELVSFLSSGRSLCSLK-LRHCHLDRDFGR------MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG  338 (453)
Q Consensus       266 ~~i~~~l~~~l~~~~~L~~L~-L~~n~l~~~~~~------~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~  338 (453)
                           ..+..+..+++|+.|+ ++.|.+.+ ...      .+. .+ . ...|+.|+|++|.+++         +|. ++
T Consensus       400 -----~~~~~l~~l~~L~~L~~l~~n~~~~-L~~l~l~~n~i~-~l-~-~~~L~~L~Ls~n~l~~---------lp~-~~  460 (567)
T 1dce_A          400 -----YEKETLQYFSTLKAVDPMRAAYLDD-LRSKFLLENSVL-KM-E-YADVRVLHLAHKDLTV---------LCH-LE  460 (567)
T ss_dssp             -----GHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHHH-HH-H-HTTCSEEECTTSCCSS---------CCC-GG
T ss_pred             -----CCHHHHHHHHhcccCcchhhcccch-hhhhhhhccccc-cc-C-ccCceEEEecCCCCCC---------CcC-cc
Confidence                 4566667778888887 66654432 111      111 11 1 2469999999999986         333 55


Q ss_pred             CCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          339 AGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       339 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                         .+++|++|+|++|.|+.     +|..+..+++|+.|+|++|.|++      +|    .+..+++|+.|+|++|+|+.
T Consensus       461 ---~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~------lp----~l~~l~~L~~L~Ls~N~l~~  522 (567)
T 1dce_A          461 ---QLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALEN------VD----GVANLPRLQELLLCNNRLQQ  522 (567)
T ss_dssp             ---GGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCC------CG----GGTTCSSCCEEECCSSCCCS
T ss_pred             ---ccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCC------Cc----ccCCCCCCcEEECCCCCCCC
Confidence               67899999999999995     78899999999999999999997      55    36788999999999999988


Q ss_pred             hhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          419 RGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       419 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      ..   .+..+..+ ++|+.|+|++|.|++..+
T Consensus       523 ~~---~p~~l~~l-~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          523 SA---AIQPLVSC-PRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SS---TTGGGGGC-TTCCEEECTTSGGGGSSS
T ss_pred             CC---CcHHHhcC-CCCCEEEecCCcCCCCcc
Confidence            31   06677774 569999999999987644

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.43  E-value=6.9e-14  Score=146.07  Aligned_cols=186  Identities=18%  Similarity=0.103  Sum_probs=111.1

Q ss_pred             CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchh
Q 012930          188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  267 (453)
Q Consensus       188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~  267 (453)
                      .++++|+|++|.++.....    .+.++++|++|+|++|.|+...+.++..        +++|++|+|++|+++.     
T Consensus        52 ~~~~~LdLs~N~i~~l~~~----~f~~l~~L~~L~Ls~N~i~~i~~~~f~~--------L~~L~~L~Ls~N~l~~-----  114 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS-----  114 (635)
T ss_dssp             TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTT--------CTTCCEEECTTCCCCE-----
T ss_pred             cCCCEEEeeCCCCCCCCHH----HHhCCCCCCEEECCCCcCCCcChhHhcC--------CCCCCEEEccCCcCCC-----
Confidence            4577777777775543222    2456777777777777777655444433        5777788888777765     


Q ss_pred             hHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCccc
Q 012930          268 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR  347 (453)
Q Consensus       268 i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~  347 (453)
                         ..+..+.++++|++|+|++|++++-.+..     +.++++|++|++++|.++...       +|..++   .+++|+
T Consensus       115 ---l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~-----~~~L~~L~~L~Ls~N~l~~~~-------~~~~~~---~l~~L~  176 (635)
T 4g8a_A          115 ---LALGAFSGLSSLQKLVAVETNLASLENFP-----IGHLKTLKELNVAHNLIQSFK-------LPEYFS---NLTNLE  176 (635)
T ss_dssp             ---ECGGGGTTCTTCCEEECTTSCCCCSTTCC-----CTTCTTCCEEECCSSCCCCCC-------CCGGGG---GCTTCC
T ss_pred             ---CCHHHhcCCCCCCEEECCCCcCCCCChhh-----hhcCcccCeeccccCccccCC-------Cchhhc---cchhhh
Confidence               22345667778888888888776522211     244677888888888776421       123444   457778


Q ss_pred             EEEecCCCCChhhHHHHHHHHhCCC-CccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          348 LLNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       348 ~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      +|++++|+++......+ ..+...+ .+..++++.|.++.      ++   ........++.+++.+|..+.
T Consensus       177 ~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~------i~---~~~~~~~~~~~l~l~~n~~~~  238 (635)
T 4g8a_A          177 HLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNF------IQ---PGAFKEIRLHKLTLRNNFDSL  238 (635)
T ss_dssp             EEECCSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCE------EC---TTTTTTCEEEEEEEESCCSSH
T ss_pred             hhcccCccccccccccc-cchhhhhhhhhhhhcccCcccc------cC---cccccchhhhhhhhhcccccc
Confidence            88888887765211111 1122222 34567777777765      32   112233456677777776554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.42  E-value=2.3e-13  Score=121.59  Aligned_cols=157  Identities=18%  Similarity=0.149  Sum_probs=117.3

Q ss_pred             eeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccC
Q 012930          250 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD  329 (453)
Q Consensus       250 L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~  329 (453)
                      -+.++.+++.++..         +..  ..++|++|++++|.+.+..+..     +..+++|++|++++|.+++..+   
T Consensus         9 ~~~v~c~~~~l~~~---------p~~--~~~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~---   69 (208)
T 2o6s_A            9 GTTVECYSQGRTSV---------PTG--IPAQTTYLDLETNSLKSLPNGV-----FDELTSLTQLYLGGNKLQSLPN---   69 (208)
T ss_dssp             TTEEECCSSCCSSC---------CSC--CCTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCT---
T ss_pred             CCEEEecCCCccCC---------CCC--CCCCCcEEEcCCCccCcCChhh-----hcccccCcEEECCCCccCccCh---
Confidence            45677777777652         211  2468999999999998633322     2457999999999999986332   


Q ss_pred             cCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEE
Q 012930          330 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL  409 (453)
Q Consensus       330 ~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L  409 (453)
                           ..+.   .+++|++|++++|+++.    ..+..+..+++|+.|++++|.|+.      ++.  ..+..+++|++|
T Consensus        70 -----~~~~---~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L  129 (208)
T 2o6s_A           70 -----GVFN---KLTSLTYLNLSTNQLQS----LPNGVFDKLTQLKELALNTNQLQS------LPD--GVFDKLTQLKDL  129 (208)
T ss_dssp             -----TTTT---TCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCCEE
T ss_pred             -----hhcC---CCCCcCEEECCCCcCCc----cCHhHhcCccCCCEEEcCCCcCcc------cCH--hHhccCCcCCEE
Confidence                 2233   67899999999999986    233457889999999999999986      432  446788999999


Q ss_pred             EccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          410 YLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       410 ~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      ++++|.++..    ....+.. .++|++|++++|.+....+
T Consensus       130 ~l~~N~l~~~----~~~~~~~-l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          130 RLYQNQLKSV----PDGVFDR-LTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             ECCSSCCSCC----CTTTTTT-CTTCCEEECCSCCBCCCTT
T ss_pred             ECCCCcccee----CHHHhcc-CCCccEEEecCCCeecCCC
Confidence            9999999874    2233555 3569999999999877554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.42  E-value=1.5e-14  Score=140.93  Aligned_cols=181  Identities=21%  Similarity=0.134  Sum_probs=133.1

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHh-cCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQ-NSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~-~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      ..+.++++++.+..++..+.  ..++.|+|++|.+.......    +. .+++|++|+|++|.|+...+..+..      
T Consensus        19 ~~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N~i~~i~~~~~~~------   86 (361)
T 2xot_A           19 ASNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHNHLNFISSEAFVP------   86 (361)
T ss_dssp             ETTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSSCCCEECTTTTTT------
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhh----hhhcccccCEEECCCCcCCccChhhccC------
Confidence            44567777777766665432  46899999999976543322    33 7889999999999998766555543      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                        +.+|++|++++|.++.        ..+..+..+++|++|+|++|.+....+..+     ..+++|+.|+|++|.+++.
T Consensus        87 --l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~l  151 (361)
T 2xot_A           87 --VPNLRYLDLSSNHLHT--------LDEFLFSDLQALEVLLLYNNHIVVVDRNAF-----EDMAQLQKLYLSQNQISRF  151 (361)
T ss_dssp             --CTTCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCSSCCCEECTTTT-----TTCTTCCEEECCSSCCCSC
T ss_pred             --CCCCCEEECCCCcCCc--------CCHHHhCCCcCCCEEECCCCcccEECHHHh-----CCcccCCEEECCCCcCCee
Confidence              5889999999999887        334467789999999999999987444433     4579999999999999863


Q ss_pred             ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC--ccEEeCCCCCCC
Q 012930          325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN--LEILDISDNTIE  385 (453)
Q Consensus       325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~--L~~L~Ls~N~i~  385 (453)
                      ..        ..+..+..+++|+.|+|++|+|+.-    -+..+..++.  ++.|+|++|++.
T Consensus       152 ~~--------~~~~~~~~l~~L~~L~L~~N~l~~l----~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          152 PV--------ELIKDGNKLPKLMLLDLSSNKLKKL----PLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CG--------GGTC----CTTCCEEECCSSCCCCC----CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CH--------HHhcCcccCCcCCEEECCCCCCCcc----CHHHhhhccHhhcceEEecCCCcc
Confidence            22        2222113678999999999999973    2345666776  488999999986

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.41  E-value=1.2e-14  Score=154.15  Aligned_cols=114  Identities=23%  Similarity=0.211  Sum_probs=56.9

Q ss_pred             HHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEec
Q 012930          273 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLR  352 (453)
Q Consensus       273 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~  352 (453)
                      +..+..++.|+.|+|++|.+.. .+..+.     .+++|++|+|++|.|+.         +|..++   .+++|++|+|+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~-----~l~~L~~L~Ls~N~l~~---------lp~~~~---~l~~L~~L~Ls  278 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFN-ISANIF-----KYDFLTRLYLNGNSLTE---------LPAEIK---NLSNLRVLDLS  278 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSC-CCGGGG-----GCCSCSCCBCTTSCCSC---------CCGGGG---GGTTCCEEECT
T ss_pred             hhhhccCCCCcEEECCCCCCCC-CChhhc-----CCCCCCEEEeeCCcCcc---------cChhhh---CCCCCCEEeCc
Confidence            3344455555555555555542 332221     24555555555555552         224444   34555555665


Q ss_pred             CCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          353 GNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       353 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      +|.|+.     +|..+..+++|+.|+|++|.|+.      +|   ..++.+++|+.|+|++|.|+.
T Consensus       279 ~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~------lp---~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          279 HNRLTS-----LPAELGSCFQLKYFYFFDNMVTT------LP---WEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             TSCCSS-----CCSSGGGGTTCSEEECCSSCCCC------CC---SSTTSCTTCCCEECTTSCCCS
T ss_pred             CCcCCc-----cChhhcCCCCCCEEECCCCCCCc------cC---hhhhcCCCccEEeCCCCccCC
Confidence            555553     45555555555666665555553      44   335555555566666655554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.40  E-value=1.2e-13  Score=144.11  Aligned_cols=186  Identities=17%  Similarity=0.084  Sum_probs=130.6

Q ss_pred             CCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChh
Q 012930          216 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  295 (453)
Q Consensus       216 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~  295 (453)
                      +++++|+|++|.|+...+..+..        +++|++|+|++|.++.        .-+.++.++++|++|+|++|+++.-
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~--------l~~L~~L~Ls~N~i~~--------i~~~~f~~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFS--------FPELQVLDLSRCEIQT--------IEDGAYQSLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTT--------CTTCCEEECTTCCCCE--------ECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhC--------CCCCCEEECCCCcCCC--------cChhHhcCCCCCCEEEccCCcCCCC
Confidence            47999999999999777667655        6889999999998876        2344677889999999999998773


Q ss_pred             HHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCcc
Q 012930          296 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE  375 (453)
Q Consensus       296 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  375 (453)
                      .+..     +..+++|++|++++|.+++..+        ..++   ++++|++|+|++|.++..   .++..+..+++|+
T Consensus       116 ~~~~-----f~~L~~L~~L~Ls~N~l~~l~~--------~~~~---~L~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~  176 (635)
T 4g8a_A          116 ALGA-----FSGLSSLQKLVAVETNLASLEN--------FPIG---HLKTLKELNVAHNLIQSF---KLPEYFSNLTNLE  176 (635)
T ss_dssp             CGGG-----GTTCTTCCEEECTTSCCCCSTT--------CCCT---TCTTCCEEECCSSCCCCC---CCCGGGGGCTTCC
T ss_pred             CHHH-----hcCCCCCCEEECCCCcCCCCCh--------hhhh---cCcccCeeccccCccccC---CCchhhccchhhh
Confidence            3222     3557899999999999886332        2233   778999999999988752   1456677889999


Q ss_pred             EEeCCCCCCChhHHHhHHHHHHhhcCCC-CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          376 ILDISDNTIEDDGIRSLIPYFVQASERC-NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       376 ~L~Ls~N~i~~~g~~~l~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      +|++++|+|+......+     ..+... ..+..++++.|.++..     ...... ...+..+++++|....
T Consensus       177 ~L~L~~N~l~~~~~~~l-----~~L~~l~~~~~~~~ls~n~l~~i-----~~~~~~-~~~~~~l~l~~n~~~~  238 (635)
T 4g8a_A          177 HLDLSSNKIQSIYCTDL-----RVLHQMPLLNLSLDLSLNPMNFI-----QPGAFK-EIRLHKLTLRNNFDSL  238 (635)
T ss_dssp             EEECCSSCCCEECGGGG-----HHHHTCTTCCCEEECTTCCCCEE-----CTTTTT-TCEEEEEEEESCCSSH
T ss_pred             hhcccCccccccccccc-----cchhhhhhhhhhhhcccCccccc-----Cccccc-chhhhhhhhhcccccc
Confidence            99999998876311111     112222 2455788999988763     222222 2336778888876543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.40  E-value=1.2e-13  Score=119.09  Aligned_cols=138  Identities=22%  Similarity=0.243  Sum_probs=93.1

Q ss_pred             CCCccEEEcCCCCCC-hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCC
Q 012930          279 GRSLCSLKLRHCHLD-RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC  357 (453)
Q Consensus       279 ~~~L~~L~L~~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~  357 (453)
                      .++|++|++++|.+. +..+..+     ..+++|++|++++|.+++.             ..+..+++|++|++++|.++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~-----~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~Ls~N~l~   84 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLT-----AEFVNLEFLSLINVGLISV-------------SNLPKLPKLKKLELSENRIF   84 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCC-----GGGGGCCEEEEESSCCCCC-------------SSCCCCSSCCEEEEESCCCC
T ss_pred             cccCCEEECCCCCCChhhHHHHH-----HhCCCCCEEeCcCCCCCCh-------------hhhccCCCCCEEECcCCcCc
Confidence            466777777777776 3333322     3357788888888887752             23336778888888888887


Q ss_pred             hhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcE
Q 012930          358 KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTS  437 (453)
Q Consensus       358 ~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~  437 (453)
                      .    .++..+..+++|+.|++++|.|++      +|.+ ..+..+++|++|++++|.++..... ....+..+ ++|++
T Consensus        85 ~----~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l-~~L~~  151 (168)
T 2ell_A           85 G----GLDMLAEKLPNLTHLNLSGNKLKD------ISTL-EPLKKLECLKSLDLFNCEVTNLNDY-RESVFKLL-PQLTY  151 (168)
T ss_dssp             S----CCCHHHHHCTTCCEEECBSSSCCS------SGGG-GGGSSCSCCCEEECCSSGGGTSTTH-HHHHHTTC-SSCCE
T ss_pred             h----HHHHHHhhCCCCCEEeccCCccCc------chhH-HHHhcCCCCCEEEeeCCcCcchHHH-HHHHHHhC-ccCcE
Confidence            6    255666678888888888888876      3321 3467778888888888887764210 11355553 45888


Q ss_pred             EECcCCCCCc
Q 012930          438 LSIADNNLGR  447 (453)
Q Consensus       438 L~Ls~N~l~~  447 (453)
                      |++++|.+..
T Consensus       152 L~l~~n~~~~  161 (168)
T 2ell_A          152 LDGYDREDQE  161 (168)
T ss_dssp             ETTEETTSCB
T ss_pred             ecCCCCChhh
Confidence            8888887755

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.38  E-value=6.1e-13  Score=112.18  Aligned_cols=132  Identities=21%  Similarity=0.244  Sum_probs=85.3

Q ss_pred             CCccEEEcCCCCCC-hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCCh
Q 012930          280 RSLCSLKLRHCHLD-RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK  358 (453)
Q Consensus       280 ~~L~~L~L~~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~  358 (453)
                      ++|++|++++|.+. +..+..+     ..+++|++|++++|.+++.             ..+..+++|++|++++|.+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~Ls~n~i~~   78 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLT-----DEFEELEFLSTINVGLTSI-------------ANLPKLNKLKKLELSDNRVSG   78 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCC-----TTCTTCCEEECTTSCCCCC-------------TTCCCCTTCCEEECCSSCCCS
T ss_pred             ccCeEEEccCCcCChhHHHHHH-----hhcCCCcEEECcCCCCCCc-------------hhhhcCCCCCEEECCCCcccc
Confidence            56777777777765 3333221     3457778888888777751             223366788888888888876


Q ss_pred             hhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEE
Q 012930          359 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSL  438 (453)
Q Consensus       359 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L  438 (453)
                          .+|..+..+++|+.|++++|.+++      ++.. ..+..+++|++|++++|.++..... ....+..+ ++|+.|
T Consensus        79 ----~~~~~~~~l~~L~~L~ls~N~i~~------~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l-~~L~~L  145 (149)
T 2je0_A           79 ----GLEVLAEKCPNLTHLNLSGNKIKD------LSTI-EPLKKLENLKSLDLFNCEVTNLNDY-RENVFKLL-PQLTYL  145 (149)
T ss_dssp             ----CTHHHHHHCTTCCEEECTTSCCCS------HHHH-GGGGGCTTCCEEECTTCGGGGSTTH-HHHHHHHC-TTCCEE
T ss_pred             ----hHHHHhhhCCCCCEEECCCCcCCC------hHHH-HHHhhCCCCCEEeCcCCcccchHHH-HHHHHHHC-CCcccc
Confidence                356666778888888888888876      2211 3466678888888888887764221 01344553 448888


Q ss_pred             ECcC
Q 012930          439 SIAD  442 (453)
Q Consensus       439 ~Ls~  442 (453)
                      |+++
T Consensus       146 ~l~d  149 (149)
T 2je0_A          146 DGYD  149 (149)
T ss_dssp             TTBC
T ss_pred             cCCC
Confidence            8763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.38  E-value=2.1e-13  Score=117.47  Aligned_cols=138  Identities=22%  Similarity=0.237  Sum_probs=66.8

Q ss_pred             cCCCccEEEcCCCCCC-hhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCC
Q 012930          214 NSETLASLEFLHCKLS-PSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  292 (453)
Q Consensus       214 ~~~~L~~L~L~~n~l~-~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l  292 (453)
                      ..++|++|++++|.++ +..+..+..        +++|+.|++++|.++.         + ..+..+++|++|++++|.+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~--------l~~L~~L~l~~n~l~~---------~-~~~~~l~~L~~L~Ls~N~l   83 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAE--------FVNLEFLSLINVGLIS---------V-SNLPKLPKLKKLELSENRI   83 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGG--------GGGCCEEEEESSCCCC---------C-SSCCCCSSCCEEEEESCCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHh--------CCCCCEEeCcCCCCCC---------h-hhhccCCCCCEEECcCCcC
Confidence            3356666666666655 222211111        3556666666666555         1 3445556666666666666


Q ss_pred             ChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCC
Q 012930          293 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIP  372 (453)
Q Consensus       293 ~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  372 (453)
                      .+..+..+     ..+++|++|++++|.+++...       +..+.   .+++|++|++++|.++.... .....+..++
T Consensus        84 ~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~-------~~~l~---~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~  147 (168)
T 2ell_A           84 FGGLDMLA-----EKLPNLTHLNLSGNKLKDIST-------LEPLK---KLECLKSLDLFNCEVTNLND-YRESVFKLLP  147 (168)
T ss_dssp             CSCCCHHH-----HHCTTCCEEECBSSSCCSSGG-------GGGGS---SCSCCCEEECCSSGGGTSTT-HHHHHHTTCS
T ss_pred             chHHHHHH-----hhCCCCCEEeccCCccCcchh-------HHHHh---cCCCCCEEEeeCCcCcchHH-HHHHHHHhCc
Confidence            55322222     124566666666666554110       01222   44555566666555554110 0012445555


Q ss_pred             CccEEeCCCCCCC
Q 012930          373 NLEILDISDNTIE  385 (453)
Q Consensus       373 ~L~~L~Ls~N~i~  385 (453)
                      +|+.|++++|.+.
T Consensus       148 ~L~~L~l~~n~~~  160 (168)
T 2ell_A          148 QLTYLDGYDREDQ  160 (168)
T ss_dssp             SCCEETTEETTSC
T ss_pred             cCcEecCCCCChh
Confidence            5555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.37  E-value=2.4e-13  Score=114.72  Aligned_cols=133  Identities=22%  Similarity=0.161  Sum_probs=83.4

Q ss_pred             cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930          248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  327 (453)
Q Consensus       248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  327 (453)
                      ++|+.|++++|.++..       .++..+..+++|++|++++|.+.+.  ..     +..+++|++|++++|.+++..+ 
T Consensus        17 ~~l~~L~l~~n~l~~~-------~~~~~~~~l~~L~~L~l~~n~l~~~--~~-----~~~l~~L~~L~Ls~n~i~~~~~-   81 (149)
T 2je0_A           17 SDVKELVLDNSRSNEG-------KLEGLTDEFEELEFLSTINVGLTSI--AN-----LPKLNKLKKLELSDNRVSGGLE-   81 (149)
T ss_dssp             GGCSEEECTTCBCBTT-------BCCSCCTTCTTCCEEECTTSCCCCC--TT-----CCCCTTCCEEECCSSCCCSCTH-
T ss_pred             ccCeEEEccCCcCChh-------HHHHHHhhcCCCcEEECcCCCCCCc--hh-----hhcCCCCCEEECCCCcccchHH-
Confidence            5677777777776610       2334456677788888888777663  11     2446778888888887775332 


Q ss_pred             cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc
Q 012930          328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV  407 (453)
Q Consensus       328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~  407 (453)
                             ..+.   .+++|++|++++|.+++.   ..+..+..+++|+.|++++|.+++...  ..+   ..+..+++|+
T Consensus        82 -------~~~~---~l~~L~~L~ls~N~i~~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~---~~~~~l~~L~  143 (149)
T 2je0_A           82 -------VLAE---KCPNLTHLNLSGNKIKDL---STIEPLKKLENLKSLDLFNCEVTNLND--YRE---NVFKLLPQLT  143 (149)
T ss_dssp             -------HHHH---HCTTCCEEECTTSCCCSH---HHHGGGGGCTTCCEEECTTCGGGGSTT--HHH---HHHHHCTTCC
T ss_pred             -------HHhh---hCCCCCEEECCCCcCCCh---HHHHHHhhCCCCCEEeCcCCcccchHH--HHH---HHHHHCCCcc
Confidence                   4444   456788888888887762   123567778888888888887765211  000   1244557788


Q ss_pred             EEEccC
Q 012930          408 ELYLEN  413 (453)
Q Consensus       408 ~L~L~~  413 (453)
                      +|++++
T Consensus       144 ~L~l~d  149 (149)
T 2je0_A          144 YLDGYD  149 (149)
T ss_dssp             EETTBC
T ss_pred             cccCCC
Confidence            877653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.34  E-value=3.8e-14  Score=150.25  Aligned_cols=60  Identities=18%  Similarity=0.178  Sum_probs=27.9

Q ss_pred             cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCC
Q 012930          248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG  322 (453)
Q Consensus       248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~  322 (453)
                      .+|++|+|++|.++.         ++..+..+++|++|+|++|.++. .|..+     ..+++|++|+|++|.|+
T Consensus       247 ~~L~~L~Ls~N~l~~---------lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~-----~~l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          247 DFLTRLYLNGNSLTE---------LPAEIKNLSNLRVLDLSHNRLTS-LPAEL-----GSCFQLKYFYFFDNMVT  306 (727)
T ss_dssp             CSCSCCBCTTSCCSC---------CCGGGGGGTTCCEEECTTSCCSS-CCSSG-----GGGTTCSEEECCSSCCC
T ss_pred             CCCCEEEeeCCcCcc---------cChhhhCCCCCCEEeCcCCcCCc-cChhh-----cCCCCCCEEECCCCCCC
Confidence            445555555555443         33334445555555555555442 33322     22345555555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.32  E-value=3.6e-13  Score=130.39  Aligned_cols=206  Identities=18%  Similarity=0.193  Sum_probs=138.4

Q ss_pred             CccEEEcCCCCCCh----hHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhH-HHHHHhhcCCCCccEEEcCCCC
Q 012930          217 TLASLEFLHCKLSP----SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV-VELVSFLSSGRSLCSLKLRHCH  291 (453)
Q Consensus       217 ~L~~L~L~~n~l~~----~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~-~~l~~~l~~~~~L~~L~L~~n~  291 (453)
                      .++.|.+..+...+    .....+++++..    .++|+.|.+...........-+. ..+...+..+|+|+.|+|++|.
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~----l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~  183 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEK----FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN  183 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHH----HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhh----cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence            46677777655431    233444433322    37899999976543211110000 0255667788999999999882


Q ss_pred             -CChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCC---CCChhhHHHHHHH
Q 012930          292 -LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN---NLCKADARDLGSA  367 (453)
Q Consensus       292 -l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n---~l~~~~~~~l~~~  367 (453)
                       +.  .+. +      .+++|++|+|..|.+++...        ..+.. ..+++|+.|+|+.+   ...+.+++.+...
T Consensus       184 ~l~--l~~-~------~~~~L~~L~L~~~~l~~~~l--------~~l~~-~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          184 NLS--IGK-K------PRPNLKSLEIISGGLPDSVV--------EDILG-SDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             TCB--CCS-C------BCTTCSEEEEECSBCCHHHH--------HHHHH-SBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             Cce--ecc-c------cCCCCcEEEEecCCCChHHH--------HHHHH-ccCCCCcEEEEeccccccccchhHHHHHHH
Confidence             21  111 1      25899999999998875322        23321 15689999998642   2233333344444


Q ss_pred             Hh--CCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCC
Q 012930          368 LV--HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL  445 (453)
Q Consensus       368 l~--~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  445 (453)
                      +.  .+|+|+.|+|++|.+++.+...++.     ...+++|++|+|+.|.|++.|+.+++..+.. .++|+.|+|++|.|
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-----a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~-l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLE-----SDILPQLETMDISAGVLTDEGARLLLDHVDK-IKHLKFINMKYNYL  319 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHH-----CSSGGGCSEEECCSSCCBHHHHHHHHTTHHH-HTTCSEEECCSBBC
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHh-----CccCCCCCEEECCCCCCChHHHHHHHhhccc-CCcceEEECCCCcC
Confidence            43  5789999999999999988777753     3456899999999999999999999887766 46699999999999


Q ss_pred             Ccccc
Q 012930          446 GRFCA  450 (453)
Q Consensus       446 ~~~~~  450 (453)
                      ++.+.
T Consensus       320 ~d~~~  324 (362)
T 2ra8_A          320 SDEMK  324 (362)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            98765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.32  E-value=3.9e-13  Score=118.61  Aligned_cols=133  Identities=18%  Similarity=0.174  Sum_probs=101.3

Q ss_pred             ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccccc
Q 012930          249 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  328 (453)
Q Consensus       249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~  328 (453)
                      .-+.++++++.++.         ++..+  ..+|++|++++|.+.+..+..+    +..+++|++|+|++|.+++..+  
T Consensus         9 ~~~~l~~s~~~l~~---------ip~~~--~~~l~~L~l~~n~i~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~--   71 (192)
T 1w8a_A            9 EGTTVDCTGRGLKE---------IPRDI--PLHTTELLLNDNELGRISSDGL----FGRLPHLVKLELKRNQLTGIEP--   71 (192)
T ss_dssp             ETTEEECTTSCCSS---------CCSCC--CTTCSEEECCSCCCCSBCCSCS----GGGCTTCCEEECCSSCCCCBCT--
T ss_pred             CCCEEEcCCCCcCc---------CccCC--CCCCCEEECCCCcCCccCCccc----cccCCCCCEEECCCCCCCCcCH--
Confidence            44789999998876         33322  2389999999999876433211    2447899999999999987544  


Q ss_pred             CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccE
Q 012930          329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE  408 (453)
Q Consensus       329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~  408 (453)
                            ..+.   .+++|++|+|++|+|+.    ..+..+..+++|+.|+|++|+|++.     .|   ..+..+++|++
T Consensus        72 ------~~~~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~-----~~---~~~~~l~~L~~  130 (192)
T 1w8a_A           72 ------NAFE---GASHIQELQLGENKIKE----ISNKMFLGLHQLKTLNLYDNQISCV-----MP---GSFEHLNSLTS  130 (192)
T ss_dssp             ------TTTT---TCTTCCEEECCSCCCCE----ECSSSSTTCTTCCEEECCSSCCCEE-----CT---TSSTTCTTCCE
T ss_pred             ------hHcC---CcccCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCCee-----CH---HHhhcCCCCCE
Confidence                  4444   67899999999999987    2344578899999999999999872     34   55778899999


Q ss_pred             EEccCCCCChh
Q 012930          409 LYLENCELSGR  419 (453)
Q Consensus       409 L~L~~n~l~~~  419 (453)
                      |+|++|.++..
T Consensus       131 L~L~~N~l~c~  141 (192)
T 1w8a_A          131 LNLASNPFNCN  141 (192)
T ss_dssp             EECTTCCBCCS
T ss_pred             EEeCCCCccCc
Confidence            99999998754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.29  E-value=8e-13  Score=114.84  Aligned_cols=64  Identities=19%  Similarity=0.366  Sum_probs=27.8

Q ss_pred             CCCcccEEEecCCCCChhhHHHHH-HHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCC
Q 012930          342 SLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS  417 (453)
Q Consensus       342 ~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~  417 (453)
                      .+++|++|++++|.|+.     ++ ..+..+++|+.|++++|.|++      +|.+ ..+..+++|++|++++|.++
T Consensus        62 ~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~N~i~~------~~~~-~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           62 LLRRLKTLLVNNNRICR-----IGEGLDQALPDLTELILTNNSLVE------LGDL-DPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             CCSSCCEEECCSSCCCE-----ECSCHHHHCTTCCEEECCSCCCCC------GGGG-GGGGGCTTCCEEECCSSGGG
T ss_pred             cCCCCCEEECCCCcccc-----cCcchhhcCCCCCEEECCCCcCCc------chhh-HhhhcCCCCCEEEecCCCCC
Confidence            34445555555554443     22 122444455555555555443      2211 12334444555555555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.27  E-value=4.1e-14  Score=137.15  Aligned_cols=181  Identities=20%  Similarity=0.058  Sum_probs=80.2

Q ss_pred             ccceeccccccchHHHhh-hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccE-EEcCCCCCChhHHHHHHHHhhcc
Q 012930          166 YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLAS-LEFLHCKLSPSFVEGICRSLCSK  243 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~-L~L~~n~l~~~~~~~l~~~L~~~  243 (453)
                      .++.|+|+++.+..++.. +.++++|++|+|++|.+...++.   ..+.+++++++ +.+.+|+++...+..+..     
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~---~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~-----  102 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA---DVFSNLPKLHEIRIEKANNLLYINPEAFQN-----  102 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT---TSBCSCTTCCEEEEEEETTCCEECTTSBCC-----
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh---hHhhcchhhhhhhcccCCcccccCchhhhh-----
Confidence            455555555555554443 34455566666665553221110   01234444443 334445554433332211     


Q ss_pred             ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCC-CCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCC
Q 012930          244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG  322 (453)
Q Consensus       244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~  322 (453)
                         +++|++|++++|.+....        ...+....++..+++.+ +.+.. .+....   ......++.|++++|.|+
T Consensus       103 ---l~~L~~L~l~~n~l~~~~--------~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f---~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X          103 ---LPNLQYLLISNTGIKHLP--------DVHKIHSLQKVLLDIQDNINIHT-IERNSF---VGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ---CTTCCEEEEEEECCSSCC--------CCTTCCBSSCEEEEEESCTTCCE-ECTTSS---TTSBSSCEEEECCSSCCC
T ss_pred             ---ccccccccccccccccCC--------chhhcccchhhhhhhcccccccc-ccccch---hhcchhhhhhcccccccc
Confidence               355566666666554411        11122333455555543 23332 111100   011234556666666655


Q ss_pred             CcccccCcCchHHhhcCCCCCCcccEEEecC-CCCChhhHHHHHH-HHhCCCCccEEeCCCCCCCh
Q 012930          323 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRG-NNLCKADARDLGS-ALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       323 ~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~  386 (453)
                      ..         +....   ...+|++|++++ |.++.     ++. ++..+++|+.|||++|+|+.
T Consensus       168 ~i---------~~~~f---~~~~L~~l~l~~~n~l~~-----i~~~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          168 EI---------HNSAF---NGTQLDELNLSDNNNLEE-----LPNDVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             EE---------CTTSS---TTEEEEEEECTTCTTCCC-----CCTTTTTTEECCSEEECTTSCCCC
T ss_pred             CC---------Chhhc---cccchhHHhhccCCcccC-----CCHHHhccCcccchhhcCCCCcCc
Confidence            31         11111   234566666654 34443     332 44556666666666666655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.27  E-value=1.3e-12  Score=115.25  Aligned_cols=129  Identities=18%  Similarity=0.191  Sum_probs=97.1

Q ss_pred             cEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHH-hhcCCCCccEEEcCCCCCChhHH
Q 012930          219 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS-FLSSGRSLCSLKLRHCHLDRDFG  297 (453)
Q Consensus       219 ~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~  297 (453)
                      ++++++++.++ ..+..+          ...+++|++++|.++..        .+. .+..+++|++|+|++|.+++..+
T Consensus        11 ~~l~~s~~~l~-~ip~~~----------~~~l~~L~l~~n~i~~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~   71 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDI----------PLHTTELLLNDNELGRI--------SSDGLFGRLPHLVKLELKRNQLTGIEP   71 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC----------CTTCSEEECCSCCCCSB--------CCSCSGGGCTTCCEEECCSSCCCCBCT
T ss_pred             CEEEcCCCCcC-cCccCC----------CCCCCEEECCCCcCCcc--------CCccccccCCCCCEEECCCCCCCCcCH
Confidence            68889988885 222211          35789999999998762        111 36788999999999999987545


Q ss_pred             HHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEE
Q 012930          298 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL  377 (453)
Q Consensus       298 ~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  377 (453)
                      ..+     ..+++|++|+|++|.+++..+        ..+   ..+++|++|+|++|+|+.    ..+..+..+++|+.|
T Consensus        72 ~~~-----~~l~~L~~L~Ls~N~l~~~~~--------~~~---~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L  131 (192)
T 1w8a_A           72 NAF-----EGASHIQELQLGENKIKEISN--------KMF---LGLHQLKTLNLYDNQISC----VMPGSFEHLNSLTSL  131 (192)
T ss_dssp             TTT-----TTCTTCCEEECCSCCCCEECS--------SSS---TTCTTCCEEECCSSCCCE----ECTTSSTTCTTCCEE
T ss_pred             hHc-----CCcccCCEEECCCCcCCccCH--------HHh---cCCCCCCEEECCCCcCCe----eCHHHhhcCCCCCEE
Confidence            443     457899999999999986433        223   367889999999999987    346678888999999


Q ss_pred             eCCCCCCCh
Q 012930          378 DISDNTIED  386 (453)
Q Consensus       378 ~Ls~N~i~~  386 (453)
                      +|++|+++.
T Consensus       132 ~L~~N~l~c  140 (192)
T 1w8a_A          132 NLASNPFNC  140 (192)
T ss_dssp             ECTTCCBCC
T ss_pred             EeCCCCccC
Confidence            999998874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.27  E-value=1.5e-12  Score=114.99  Aligned_cols=141  Identities=19%  Similarity=0.158  Sum_probs=105.2

Q ss_pred             eeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccC
Q 012930          250 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD  329 (453)
Q Consensus       250 L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~  329 (453)
                      -+.++++++.++.         ++..+  .++|++|+|++|.++. .+..+     ..+++|+.|+|++|.|++..+   
T Consensus        12 ~~~l~~~~~~l~~---------ip~~~--~~~l~~L~L~~n~i~~-ip~~~-----~~l~~L~~L~Ls~N~i~~i~~---   71 (193)
T 2wfh_A           12 DTVVRCSNKGLKV---------LPKGI--PRDVTELYLDGNQFTL-VPKEL-----SNYKHLTLIDLSNNRISTLSN---   71 (193)
T ss_dssp             TTEEECTTSCCSS---------CCSCC--CTTCCEEECCSSCCCS-CCGGG-----GGCTTCCEEECCSSCCCCCCT---
T ss_pred             CCEEEcCCCCCCc---------CCCCC--CCCCCEEECCCCcCch-hHHHh-----hcccCCCEEECCCCcCCEeCH---
Confidence            4688999998876         22222  2589999999999975 44332     457999999999999987433   


Q ss_pred             cCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEE
Q 012930          330 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL  409 (453)
Q Consensus       330 ~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L  409 (453)
                           ..+.   .+++|++|+|++|+|+.    ..+.++..+++|+.|+|++|.|+.      +|.  ..+..+++|++|
T Consensus        72 -----~~f~---~l~~L~~L~Ls~N~l~~----i~~~~f~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L  131 (193)
T 2wfh_A           72 -----QSFS---NMTQLLTLILSYNRLRC----IPPRTFDGLKSLRLLSLHGNDISV------VPE--GAFNDLSALSHL  131 (193)
T ss_dssp             -----TTTT---TCTTCCEEECCSSCCCB----CCTTTTTTCTTCCEEECCSSCCCB------CCT--TTTTTCTTCCEE
T ss_pred             -----hHcc---CCCCCCEEECCCCccCE----eCHHHhCCCCCCCEEECCCCCCCe------eCh--hhhhcCccccEE
Confidence                 3344   78999999999999997    334578899999999999999986      442  457778999999


Q ss_pred             EccCCCCChh-hHHHHHHHHhc
Q 012930          410 YLENCELSGR-GVSQLLDTLST  430 (453)
Q Consensus       410 ~L~~n~l~~~-~~~~l~~~l~~  430 (453)
                      +|++|.+... ....+...+..
T Consensus       132 ~L~~N~~~C~c~l~~l~~~~~~  153 (193)
T 2wfh_A          132 AIGANPLYCDCNMQWLSDWVKS  153 (193)
T ss_dssp             ECCSSCEECSGGGHHHHHHHHH
T ss_pred             EeCCCCeecCCcCHHHHHHHHh
Confidence            9999987542 22334444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.27  E-value=7.1e-14  Score=124.03  Aligned_cols=141  Identities=18%  Similarity=0.172  Sum_probs=97.3

Q ss_pred             HHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEe
Q 012930          272 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL  351 (453)
Q Consensus       272 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L  351 (453)
                      ++..+..+++|++|++++|.+.+ .+ .+.     .+++|++|++++|.++.         +|..+.   .+++|++|++
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~-----~l~~L~~L~l~~n~l~~---------l~~~~~---~~~~L~~L~L  100 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEK-IS-SLS-----GMENLRILSLGRNLIKK---------IENLDA---VADTLEELWI  100 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESC-CC-CHH-----HHTTCCEEEEEEEEECS---------CSSHHH---HHHHCSEEEE
T ss_pred             hhHHHhcCCCCCEEECCCCCCcc-cc-ccc-----cCCCCCEEECCCCCccc---------ccchhh---cCCcCCEEEC
Confidence            44466778888888888888776 33 332     25788999999888874         334444   3467889999


Q ss_pred             cCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhh------HHHHH
Q 012930          352 RGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG------VSQLL  425 (453)
Q Consensus       352 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~------~~~l~  425 (453)
                      ++|++++     ++ .+..+++|+.|++++|.|++      ++.+ ..+..+++|++|++++|.++...      .....
T Consensus       101 ~~N~l~~-----l~-~~~~l~~L~~L~l~~N~i~~------~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~  167 (198)
T 1ds9_A          101 SYNQIAS-----LS-GIEKLVNLRVLYMSNNKITN------WGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI  167 (198)
T ss_dssp             EEEECCC-----HH-HHHHHHHSSEEEESEEECCC------HHHH-HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred             cCCcCCc-----CC-ccccCCCCCEEECCCCcCCc------hhHH-HHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence            9998886     44 57778889999999998887      3322 34667788999999999876641      11123


Q ss_pred             HHHhcCCCCCcEEECcCCCCCc
Q 012930          426 DTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       426 ~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      ..+..+ ++|+.||  +|.+++
T Consensus       168 ~~~~~l-~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          168 EVVKRL-PNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHHC-SSCSEEC--CGGGTT
T ss_pred             HHHHhC-CCcEEEC--CcccCH
Confidence            345553 5588887  666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.26  E-value=1.2e-12  Score=113.70  Aligned_cols=132  Identities=16%  Similarity=0.130  Sum_probs=68.0

Q ss_pred             cceeEEEccCCCCCCCCchhhHHHHHHhhcC-CCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930          248 HKIENLSIDISSFIENCPSSVVVELVSFLSS-GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  326 (453)
Q Consensus       248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  326 (453)
                      .+|+.|++++|.++.         ++. +.. .++|++|++++|.+++-  ..     +..+++|++|++++|.+++..+
T Consensus        19 ~~L~~L~l~~n~l~~---------i~~-~~~~~~~L~~L~Ls~N~l~~~--~~-----l~~l~~L~~L~Ls~N~l~~~~~   81 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV---------IEN-LGATLDQFDAIDFSDNEIRKL--DG-----FPLLRRLKTLLVNNNRICRIGE   81 (176)
T ss_dssp             TSCEEEECTTSCCCS---------CCC-GGGGTTCCSEEECCSSCCCEE--CC-----CCCCSSCCEEECCSSCCCEECS
T ss_pred             CCceEEEeeCCCCch---------hHH-hhhcCCCCCEEECCCCCCCcc--cc-----cccCCCCCEEECCCCcccccCc
Confidence            455555555555554         111 222 23666666666666542  11     2335566666666666654211


Q ss_pred             ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHH--HHhCCCCccEEeCCCCCCChhHHHhHHHHH-HhhcCCC
Q 012930          327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS--ALVHIPNLEILDISDNTIEDDGIRSLIPYF-VQASERC  403 (453)
Q Consensus       327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l-~~~l~~~  403 (453)
                              ..+.   .+++|++|++++|.|++     ++.  .+..+++|+.|++++|++++      .|.. ...+..+
T Consensus        82 --------~~~~---~l~~L~~L~L~~N~i~~-----~~~~~~l~~l~~L~~L~l~~N~i~~------~~~~~~~~~~~l  139 (176)
T 1a9n_A           82 --------GLDQ---ALPDLTELILTNNSLVE-----LGDLDPLASLKSLTYLCILRNPVTN------KKHYRLYVIYKV  139 (176)
T ss_dssp             --------CHHH---HCTTCCEEECCSCCCCC-----GGGGGGGGGCTTCCEEECCSSGGGG------STTHHHHHHHHC
T ss_pred             --------chhh---cCCCCCEEECCCCcCCc-----chhhHhhhcCCCCCEEEecCCCCCC------cHhHHHHHHHHC
Confidence                    1123   34566666666666654     333  45566666666666666654      1110 0113344


Q ss_pred             CCccEEEccCCCCCh
Q 012930          404 NPLVELYLENCELSG  418 (453)
Q Consensus       404 ~~L~~L~L~~n~l~~  418 (453)
                      ++|+.|++++|.+.+
T Consensus       140 ~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          140 PQVRVLDFQKVKLKE  154 (176)
T ss_dssp             TTCSEETTEECCHHH
T ss_pred             CccceeCCCcCCHHH
Confidence            666666666665444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.24  E-value=3.9e-12  Score=110.50  Aligned_cols=144  Identities=17%  Similarity=0.172  Sum_probs=106.2

Q ss_pred             cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930          248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  327 (453)
Q Consensus       248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  327 (453)
                      +..+.+++++++++..         +..  ..++|++|++++|.+.+..+..     +..+++|++|++++|.+++..+ 
T Consensus         7 C~~~~l~~~~~~l~~~---------p~~--~~~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~-   69 (177)
T 2o6r_A            7 CSGTEIRCNSKGLTSV---------PTG--IPSSATRLELESNKLQSLPHGV-----FDKLTQLTKLSLSQNQIQSLPD-   69 (177)
T ss_dssp             EETTEEECCSSCCSSC---------CTT--CCTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCT-
T ss_pred             eCCCEEEecCCCCccC---------CCC--CCCCCcEEEeCCCcccEeCHHH-----hcCcccccEEECCCCcceEeCh-
Confidence            4567899999988762         221  2368999999999988633322     2457899999999999986332 


Q ss_pred             cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc
Q 012930          328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV  407 (453)
Q Consensus       328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~  407 (453)
                             ..+.   .+++|++|++++|+++.    ..+..+..+++|+.|++++|.|+.      +|.  ..+..+++|+
T Consensus        70 -------~~~~---~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~------~~~--~~~~~l~~L~  127 (177)
T 2o6r_A           70 -------GVFD---KLTKLTILYLHENKLQS----LPNGVFDKLTQLKELALDTNQLKS------VPD--GIFDRLTSLQ  127 (177)
T ss_dssp             -------TTTT---TCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCC
T ss_pred             -------hHcc---CCCccCEEECCCCCccc----cCHHHhhCCcccCEEECcCCcceE------eCH--HHhcCCcccC
Confidence                   2233   67899999999999996    233456789999999999999986      442  3467789999


Q ss_pred             EEEccCCCCChhh--HHHHHHHHhc
Q 012930          408 ELYLENCELSGRG--VSQLLDTLST  430 (453)
Q Consensus       408 ~L~L~~n~l~~~~--~~~l~~~l~~  430 (453)
                      +|++++|.++...  ...+...+..
T Consensus       128 ~L~l~~N~~~~~~~~l~~l~~~~~~  152 (177)
T 2o6r_A          128 KIWLHTNPWDCSCPRIDYLSRWLNK  152 (177)
T ss_dssp             EEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred             EEEecCCCeeccCccHHHHHHHHhh
Confidence            9999999987643  3444455554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.21  E-value=6.3e-12  Score=110.92  Aligned_cols=126  Identities=23%  Similarity=0.262  Sum_probs=90.6

Q ss_pred             cEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHH
Q 012930          219 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR  298 (453)
Q Consensus       219 ~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  298 (453)
                      +.++++++.++ ..+..+          ..+|++|++++|.++.         ++..+..+++|++|+|++|.+++..+.
T Consensus        13 ~~l~~~~~~l~-~ip~~~----------~~~l~~L~L~~n~i~~---------ip~~~~~l~~L~~L~Ls~N~i~~i~~~   72 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI----------PRDVTELYLDGNQFTL---------VPKELSNYKHLTLIDLSNNRISTLSNQ   72 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC----------CTTCCEEECCSSCCCS---------CCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred             CEEEcCCCCCC-cCCCCC----------CCCCCEEECCCCcCch---------hHHHhhcccCCCEEECCCCcCCEeCHh
Confidence            57788888776 222111          3678888888888875         445677888888888888888764333


Q ss_pred             HHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHH-HHhCCCCccEE
Q 012930          299 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEIL  377 (453)
Q Consensus       299 ~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L  377 (453)
                      .+     ..+++|++|+|++|.+++..+        ..+.   .+++|++|+|++|.|+.     ++. .+..+++|+.|
T Consensus        73 ~f-----~~l~~L~~L~Ls~N~l~~i~~--------~~f~---~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L  131 (193)
T 2wfh_A           73 SF-----SNMTQLLTLILSYNRLRCIPP--------RTFD---GLKSLRLLSLHGNDISV-----VPEGAFNDLSALSHL  131 (193)
T ss_dssp             TT-----TTCTTCCEEECCSSCCCBCCT--------TTTT---TCTTCCEEECCSSCCCB-----CCTTTTTTCTTCCEE
T ss_pred             Hc-----cCCCCCCEEECCCCccCEeCH--------HHhC---CCCCCCEEECCCCCCCe-----eChhhhhcCccccEE
Confidence            22     456888888888888886433        3333   67888888888888886     343 57778888888


Q ss_pred             eCCCCCCC
Q 012930          378 DISDNTIE  385 (453)
Q Consensus       378 ~Ls~N~i~  385 (453)
                      ++++|++.
T Consensus       132 ~L~~N~~~  139 (193)
T 2wfh_A          132 AIGANPLY  139 (193)
T ss_dssp             ECCSSCEE
T ss_pred             EeCCCCee
Confidence            88888874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.19  E-value=1.1e-11  Score=107.76  Aligned_cols=110  Identities=15%  Similarity=0.169  Sum_probs=59.1

Q ss_pred             cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930          248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  327 (453)
Q Consensus       248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  327 (453)
                      .+|+.|++++|.++.        .....+..+++|++|++++|.+++..+..     +..+++|++|++++|.+++..+ 
T Consensus        28 ~~l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~-   93 (177)
T 2o6r_A           28 SSATRLELESNKLQS--------LPHGVFDKLTQLTKLSLSQNQIQSLPDGV-----FDKLTKLTILYLHENKLQSLPN-   93 (177)
T ss_dssp             TTCSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT-
T ss_pred             CCCcEEEeCCCcccE--------eCHHHhcCcccccEEECCCCcceEeChhH-----ccCCCccCEEECCCCCccccCH-
Confidence            456666666666654        22233455666666666666665422211     1335666666666666664222 


Q ss_pred             cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHH-HHhCCCCccEEeCCCCCCCh
Q 012930          328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~  386 (453)
                             ..+.   .+++|++|++++|.++.     ++. .+..+++|+.|++++|+++.
T Consensus        94 -------~~~~---~l~~L~~L~l~~N~l~~-----~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           94 -------GVFD---KLTQLKELALDTNQLKS-----VPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             -------TTTT---TCTTCCEEECCSSCCSC-----CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             -------HHhh---CCcccCEEECcCCcceE-----eCHHHhcCCcccCEEEecCCCeec
Confidence                   1122   45566666666666654     222 34556666666666666653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.17  E-value=1.4e-13  Score=133.31  Aligned_cols=217  Identities=13%  Similarity=0.073  Sum_probs=135.7

Q ss_pred             eeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHH-HHHHHHhhccccCC
Q 012930          169 CLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFV-EGICRSLCSKRKRI  247 (453)
Q Consensus       169 ~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~-~~l~~~L~~~~~~~  247 (453)
                      .++.+++.++++|..+  ..++++|+|++|++.......    +.++++|++|+|++|.+....+ .++..        +
T Consensus        13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~----f~~l~~L~~L~Ls~N~i~~~i~~~~f~~--------L   78 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGA----FSGFGDLEKIEISQNDVLEVIEADVFSN--------L   78 (350)
T ss_dssp             EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTS----STTCTTCCEEEEECCTTCCEECTTSBCS--------C
T ss_pred             EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHH----HcCCCCCCEEECcCCCCCCccChhHhhc--------c
Confidence            3444455555555433  257889999998876443222    5678899999999998754322 12211        3


Q ss_pred             ccee-EEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCC-CCCCcc
Q 012930          248 HKIE-NLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWL  325 (453)
Q Consensus       248 ~~L~-~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~  325 (453)
                      .+++ .+.+..|+++.        ..+..+..+++|++|++++|++........     ....++..|+++++ .+....
T Consensus        79 ~~l~~~l~~~~N~l~~--------l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~l~~l~l~~~~~i~~l~  145 (350)
T 4ay9_X           79 PKLHEIRIEKANNLLY--------INPEAFQNLPNLQYLLISNTGIKHLPDVHK-----IHSLQKVLLDIQDNINIHTIE  145 (350)
T ss_dssp             TTCCEEEEEEETTCCE--------ECTTSBCCCTTCCEEEEEEECCSSCCCCTT-----CCBSSCEEEEEESCTTCCEEC
T ss_pred             hhhhhhhcccCCcccc--------cCchhhhhccccccccccccccccCCchhh-----cccchhhhhhhcccccccccc
Confidence            4444 45666778776        234567788899999999998865222111     22356778888654 455321


Q ss_pred             cccCcCchHHhhcCCCCC-CcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCC-CCCChhHHHhHHHHHHhhcCCC
Q 012930          326 SKYDRSGPLFSLGAGKSL-QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISD-NTIEDDGIRSLIPYFVQASERC  403 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-N~i~~~g~~~l~~~l~~~l~~~  403 (453)
                      +        ..+.   .+ ..+++|+|++|+|+.     ++.......+|+.|++++ |.++.      +|.  .++..+
T Consensus       146 ~--------~~f~---~~~~~l~~L~L~~N~i~~-----i~~~~f~~~~L~~l~l~~~n~l~~------i~~--~~f~~l  201 (350)
T 4ay9_X          146 R--------NSFV---GLSFESVILWLNKNGIQE-----IHNSAFNGTQLDELNLSDNNNLEE------LPN--DVFHGA  201 (350)
T ss_dssp             T--------TSST---TSBSSCEEEECCSSCCCE-----ECTTSSTTEEEEEEECTTCTTCCC------CCT--TTTTTE
T ss_pred             c--------cchh---hcchhhhhhccccccccC-----CChhhccccchhHHhhccCCcccC------CCH--HHhccC
Confidence            1        1112   22 358889999998886     555555667888998875 67766      553  456777


Q ss_pred             CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930          404 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN  444 (453)
Q Consensus       404 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  444 (453)
                      ++|++|+|++|+|+..     +...   -..|++|.+.++.
T Consensus       202 ~~L~~LdLs~N~l~~l-----p~~~---~~~L~~L~~l~~~  234 (350)
T 4ay9_X          202 SGPVILDISRTRIHSL-----PSYG---LENLKKLRARSTY  234 (350)
T ss_dssp             ECCSEEECTTSCCCCC-----CSSS---CTTCCEEECTTCT
T ss_pred             cccchhhcCCCCcCcc-----Chhh---hccchHhhhccCC
Confidence            8899999999988873     3211   1237777765543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.17  E-value=1.7e-13  Score=121.52  Aligned_cols=108  Identities=19%  Similarity=0.227  Sum_probs=62.9

Q ss_pred             CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930          247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  326 (453)
Q Consensus       247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  326 (453)
                      +++|++|++++|.++.         ++ .+..+++|++|++++|.+.. .+..+.     .+++|++|++++|.+++   
T Consensus        47 l~~L~~L~ls~n~l~~---------l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~-----~~~~L~~L~L~~N~l~~---  107 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK---------IS-SLSGMENLRILSLGRNLIKK-IENLDA-----VADTLEELWISYNQIAS---  107 (198)
T ss_dssp             TTTCSEEECSEEEESC---------CC-CHHHHTTCCEEEEEEEEECS-CSSHHH-----HHHHCSEEEEEEEECCC---
T ss_pred             CCCCCEEECCCCCCcc---------cc-ccccCCCCCEEECCCCCccc-ccchhh-----cCCcCCEEECcCCcCCc---
Confidence            3566666666666655         22 34455667777777776653 332221     13567777777777665   


Q ss_pred             ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930          327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  386 (453)
                            ++ .+.   .+++|++|++++|++++.+   ....+..+++|+.|++++|++++
T Consensus       108 ------l~-~~~---~l~~L~~L~l~~N~i~~~~---~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          108 ------LS-GIE---KLVNLRVLYMSNNKITNWG---EIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ------HH-HHH---HHHHSSEEEESEEECCCHH---HHHHHTTTTTCSEEEECSCHHHH
T ss_pred             ------CC-ccc---cCCCCCEEECCCCcCCchh---HHHHHhcCCCCCEEEecCCcccc
Confidence                  33 333   4466777777777776521   01356667777777777776654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.09  E-value=1.7e-11  Score=117.56  Aligned_cols=103  Identities=17%  Similarity=0.180  Sum_probs=74.5

Q ss_pred             CCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHH-HHHhCCCCcc-EEeCCCCCC
Q 012930          307 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLE-ILDISDNTI  384 (453)
Q Consensus       307 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~-~L~Ls~N~i  384 (453)
                      .+++|+.++|++|.++....           ..|.+|.+|+.++|.+| ++.     ++ .+|..+++|+ .+++.+ .+
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~-----------~aF~~~~~L~~l~l~~n-i~~-----I~~~aF~~~~~L~~~l~l~~-~l  285 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPD-----------FTFAQKKYLLKIKLPHN-LKT-----IGQRVFSNCGRLAGTLELPA-SV  285 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECT-----------TTTTTCTTCCEEECCTT-CCE-----ECTTTTTTCTTCCEEEEECT-TC
T ss_pred             hcCCCeEEECCCCCcceecH-----------hhhhCCCCCCEEECCcc-cce-----ehHHHhhCChhccEEEEEcc-cc
Confidence            36899999999988875333           33447889999999887 664     33 4678889999 999987 55


Q ss_pred             ChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEC
Q 012930          385 EDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSI  440 (453)
Q Consensus       385 ~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L  440 (453)
                      +.      ++.  .++..|++|+.+++++|.++..+    ..++.. .++|+.|+.
T Consensus       286 ~~------I~~--~aF~~c~~L~~l~l~~n~i~~I~----~~aF~~-~~~L~~ly~  328 (329)
T 3sb4_A          286 TA------IEF--GAFMGCDNLRYVLATGDKITTLG----DELFGN-GVPSKLIYK  328 (329)
T ss_dssp             CE------ECT--TTTTTCTTEEEEEECSSCCCEEC----TTTTCT-TCCCCEEEC
T ss_pred             eE------Ech--hhhhCCccCCEEEeCCCccCccc----hhhhcC-Ccchhhhcc
Confidence            54      322  56888899999999999887753    234444 455887763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.08  E-value=1.1e-10  Score=99.97  Aligned_cols=93  Identities=15%  Similarity=0.134  Sum_probs=70.1

Q ss_pred             CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCC-CCChhhHHHHHHHHhCCCCccEEeCCCC-CCCh
Q 012930          309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDN-TIED  386 (453)
Q Consensus       309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~  386 (453)
                      ..|+.||+++|.|++.+.           ..+.+|++|++|+|++| +|++.|++.+...-..+++|++|+|++| +|||
T Consensus        61 ~~L~~LDLs~~~Itd~GL-----------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGF-----------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             CCEEEEEEESCCCCGGGG-----------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             ceEeEEeCcCCCccHHHH-----------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            468899999988887433           33447889999999999 6999887776531111357999999997 4999


Q ss_pred             hHHHhHHHHHHhhcCCCCCccEEEccCCC-CChhh
Q 012930          387 DGIRSLIPYFVQASERCNPLVELYLENCE-LSGRG  420 (453)
Q Consensus       387 ~g~~~l~~~l~~~l~~~~~L~~L~L~~n~-l~~~~  420 (453)
                      .|+..+        ..+++|++|++++|. +|+.|
T Consensus       130 ~Gl~~L--------~~~~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          130 KGIIAL--------HHFRNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             HHHHHG--------GGCTTCCEEEEESCTTCCCHH
T ss_pred             HHHHHH--------hcCCCCCEEECCCCCCCCchH
Confidence            987766        235899999999995 88865

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.06  E-value=9.7e-11  Score=101.00  Aligned_cols=118  Identities=19%  Similarity=0.199  Sum_probs=67.0

Q ss_pred             ccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhH
Q 012930          282 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA  361 (453)
Q Consensus       282 L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~  361 (453)
                      .+.+++++|.++. .|..+       ..+|++|+|++|.|++..+        ..+.   .+++|++|+|++|+|+.   
T Consensus        11 ~~~l~~s~n~l~~-ip~~~-------~~~l~~L~L~~N~i~~~~~--------~~~~---~l~~L~~L~Ls~N~l~~---   68 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI-------PTTTQVLYLYDNQITKLEP--------GVFD---RLTQLTRLDLDNNQLTV---   68 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC-------CTTCSEEECCSSCCCCCCT--------TTTT---TCTTCSEEECCSSCCCC---
T ss_pred             CCEEEeCCCCcCc-cCccC-------CCCCcEEEcCCCcCCccCh--------hhhc---CcccCCEEECCCCCcCc---
Confidence            4556666665554 33222       3566667777766665322        2333   55667777777776664   


Q ss_pred             HHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChh--hHHHHHHHHhc
Q 012930          362 RDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR--GVSQLLDTLST  430 (453)
Q Consensus       362 ~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~  430 (453)
                       ..+..+..+++|+.|+|++|+|+.      +|.  ..+..+++|++|+|++|.++..  ....+...+..
T Consensus        69 -l~~~~f~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~  130 (170)
T 3g39_A           69 -LPAGVFDKLTQLTQLSLNDNQLKS------IPR--GAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQ  130 (170)
T ss_dssp             -CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred             -cChhhccCCCCCCEEECCCCccCE------eCH--HHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHh
Confidence             122244566777777777777765      331  3355667777777777766544  23444444544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.02  E-value=8.2e-11  Score=101.44  Aligned_cols=109  Identities=19%  Similarity=0.248  Sum_probs=86.8

Q ss_pred             CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhH
Q 012930          309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG  388 (453)
Q Consensus       309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  388 (453)
                      +..+.+++++|.++.         +|..+.     .+|++|+|++|+|+.    ..+..+..+++|+.|+|++|+|+.  
T Consensus         9 C~~~~l~~s~n~l~~---------ip~~~~-----~~l~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~--   68 (170)
T 3g39_A            9 CSGTTVDCSGKSLAS---------VPTGIP-----TTTQVLYLYDNQITK----LEPGVFDRLTQLTRLDLDNNQLTV--   68 (170)
T ss_dssp             EETTEEECTTSCCSS---------CCSCCC-----TTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCC--
T ss_pred             cCCCEEEeCCCCcCc---------cCccCC-----CCCcEEEcCCCcCCc----cChhhhcCcccCCEEECCCCCcCc--
Confidence            357899999999986         333332     689999999999997    336678899999999999999987  


Q ss_pred             HHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930          389 IRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       389 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  448 (453)
                          +|.  ..+..+++|++|+|++|+|+..    ....+..+ ++|++|+|++|.+...
T Consensus        69 ----l~~--~~f~~l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           69 ----LPA--GVFDKLTQLTQLSLNDNQLKSI----PRGAFDNL-KSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             ----CCT--TTTTTCTTCCEEECCSSCCCCC----CTTTTTTC-TTCCEEECCSSCBCTT
T ss_pred             ----cCh--hhccCCCCCCEEECCCCccCEe----CHHHhcCC-CCCCEEEeCCCCCCCC
Confidence                442  4567889999999999999874    22346663 5699999999998754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.98  E-value=2.2e-10  Score=99.15  Aligned_cols=104  Identities=21%  Similarity=0.266  Sum_probs=60.8

Q ss_pred             cEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHH
Q 012930          283 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADAR  362 (453)
Q Consensus       283 ~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~  362 (453)
                      +.+++++|.++. .|..+       ..+|++|+|++|.|++..+        ..+.   .+++|++|+|++|+|+.    
T Consensus        15 ~~l~~~~n~l~~-iP~~~-------~~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L~Ls~N~l~~----   71 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPAGI-------PTDKQRLWLNNNQITKLEP--------GVFD---HLVNLQQLYFNSNKLTA----   71 (174)
T ss_dssp             SEEECCSSCCSS-CCSCC-------CTTCSEEECCSSCCCCCCT--------TTTT---TCTTCCEEECCSSCCCC----
T ss_pred             cEEEeCCCCCCc-cCCCc-------CCCCcEEEeCCCCccccCH--------HHhc---CCcCCCEEECCCCCCCc----
Confidence            456666666543 33322       3566667777666665322        2333   55667777777776665    


Q ss_pred             HHHH-HHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          363 DLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       363 ~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                       ++. .+..+++|+.|+|++|+|+.      +|.  ..+..+++|++|+|++|.+..
T Consensus        72 -i~~~~~~~l~~L~~L~L~~N~l~~------l~~--~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           72 -IPTGVFDKLTQLTQLDLNDNHLKS------IPR--GAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             -CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCSEEECCSSCBCT
T ss_pred             -cChhHhCCcchhhEEECCCCccce------eCH--HHhccccCCCEEEeCCCCccc
Confidence             333 34566777777777777665      331  335566677777777776654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.96  E-value=2.1e-10  Score=99.23  Aligned_cols=107  Identities=17%  Similarity=0.200  Sum_probs=85.6

Q ss_pred             CCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHH
Q 012930          310 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGI  389 (453)
Q Consensus       310 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~  389 (453)
                      .-+.+++++|.++.         +|..+.     .+|++|+|++|+|+.    ..+..+..+++|+.|+|++|+|+.   
T Consensus        13 ~~~~l~~~~n~l~~---------iP~~~~-----~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~---   71 (174)
T 2r9u_A           13 DQTLVNCQNIRLAS---------VPAGIP-----TDKQRLWLNNNQITK----LEPGVFDHLVNLQQLYFNSNKLTA---   71 (174)
T ss_dssp             CSSEEECCSSCCSS---------CCSCCC-----TTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCC---
T ss_pred             CCcEEEeCCCCCCc---------cCCCcC-----CCCcEEEeCCCCccc----cCHHHhcCCcCCCEEECCCCCCCc---
Confidence            45789999999875         334333     789999999999997    346678899999999999999987   


Q ss_pred             HhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHH-HHhcCCCCCcEEECcCCCCCcc
Q 012930          390 RSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD-TLSTLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       390 ~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~  448 (453)
                         +|.  ..+..+++|++|+|++|+|+..     +. .+..+ ++|++|+|++|.+...
T Consensus        72 ---i~~--~~~~~l~~L~~L~L~~N~l~~l-----~~~~~~~l-~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           72 ---IPT--GVFDKLTQLTQLDLNDNHLKSI-----PRGAFDNL-KSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             ---CCT--TTTTTCTTCCEEECCSSCCCCC-----CTTTTTTC-TTCSEEECCSSCBCTT
T ss_pred             ---cCh--hHhCCcchhhEEECCCCcccee-----CHHHhccc-cCCCEEEeCCCCcccc
Confidence               552  4467889999999999999873     33 36663 5699999999998754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.79  E-value=7.4e-10  Score=106.10  Aligned_cols=87  Identities=11%  Similarity=0.185  Sum_probs=66.8

Q ss_pred             CCcccEEEecCCCCChhhHHHHHH-HHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc-EEEccCCCCChhh
Q 012930          343 LQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV-ELYLENCELSGRG  420 (453)
Q Consensus       343 ~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~-~L~L~~n~l~~~~  420 (453)
                      |++|+.++|++|+++.     ++. +|..+++|+.|++.+| ++.      ++.  .++..+.+|+ .+++.+ .++..+
T Consensus       225 ~~~L~~l~L~~n~i~~-----I~~~aF~~~~~L~~l~l~~n-i~~------I~~--~aF~~~~~L~~~l~l~~-~l~~I~  289 (329)
T 3sb4_A          225 MPNLVSLDISKTNATT-----IPDFTFAQKKYLLKIKLPHN-LKT------IGQ--RVFSNCGRLAGTLELPA-SVTAIE  289 (329)
T ss_dssp             CTTCCEEECTTBCCCE-----ECTTTTTTCTTCCEEECCTT-CCE------ECT--TTTTTCTTCCEEEEECT-TCCEEC
T ss_pred             cCCCeEEECCCCCcce-----ecHhhhhCCCCCCEEECCcc-cce------ehH--HHhhCChhccEEEEEcc-cceEEc
Confidence            6789999999998886     444 6888999999999988 655      332  6688889999 999988 666542


Q ss_pred             HHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930          421 VSQLLDTLSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       421 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                          ..++.. ..+|+.|++++|.++.-+
T Consensus       290 ----~~aF~~-c~~L~~l~l~~n~i~~I~  313 (329)
T 3sb4_A          290 ----FGAFMG-CDNLRYVLATGDKITTLG  313 (329)
T ss_dssp             ----TTTTTT-CTTEEEEEECSSCCCEEC
T ss_pred             ----hhhhhC-CccCCEEEeCCCccCccc
Confidence                245555 466999999998886533

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.75  E-value=7.6e-09  Score=88.50  Aligned_cols=40  Identities=23%  Similarity=0.274  Sum_probs=21.7

Q ss_pred             cccEEEecCC-CCChhhHHHHHHHHhCCCCccEEeCCCC-CCChhH
Q 012930          345 SLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDN-TIEDDG  388 (453)
Q Consensus       345 ~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g  388 (453)
                      +|++|+|++| +||+.|+..    +..+++|+.|+++++ .+++.|
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~----L~~~~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIA----LHHFRNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHH----GGGCTTCCEEEEESCTTCCCHH
T ss_pred             CCCEEEcCCCCcCCHHHHHH----HhcCCCCCEEECCCCCCCCchH
Confidence            4555666655 366655443    234566666666654 355554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.67  E-value=8.3e-09  Score=99.41  Aligned_cols=116  Identities=21%  Similarity=0.205  Sum_probs=85.6

Q ss_pred             cEEEcCCC-CCChhHHHHHHHHHhhCCCCCCEEEcCC-CCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhh
Q 012930          283 CSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSG-NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD  360 (453)
Q Consensus       283 ~~L~L~~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~  360 (453)
                      ..++++++ .+.. .|. +     ..+++|++|+|++ |.+++..+        ..+.   .+++|++|+|++|+|+.  
T Consensus        11 ~~v~~~~~n~l~~-ip~-l-----~~~~~L~~L~l~~~n~l~~~~~--------~~~~---~l~~L~~L~l~~N~l~~--   70 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-L-----PGAENLTELYIENQQHLQHLEL--------RDLR---GLGELRNLTIVKSGLRF--   70 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-S-----CSCSCCSEEECCSCSSCCEECG--------GGSC---SCCCCSEEECCSSCCCE--
T ss_pred             CEEEcCCCCCCCc-cCC-C-----CCCCCeeEEEccCCCCCCCcCh--------hHhc---cccCCCEEECCCCccce--
Confidence            46788888 8876 665 4     4568899999996 99986433        3444   78999999999999997  


Q ss_pred             HHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhh-HHHHHHHHh
Q 012930          361 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG-VSQLLDTLS  429 (453)
Q Consensus       361 ~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~  429 (453)
                        ..+.+|..+++|+.|+|++|+|+.      +|.  ..+..++ |+.|+|++|.+.... ...+...+.
T Consensus        71 --~~~~~~~~l~~L~~L~l~~N~l~~------~~~--~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~  129 (347)
T 2ifg_A           71 --VAPDAFHFTPRLSRLNLSFNALES------LSW--KTVQGLS-LQELVLSGNPLHCSCALRWLQRWEE  129 (347)
T ss_dssp             --ECTTGGGSCSCCCEEECCSSCCSC------CCS--TTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred             --eCHHHhcCCcCCCEEeCCCCccce------eCH--HHcccCC-ceEEEeeCCCccCCCccHHHHHHHH
Confidence              345578899999999999999986      542  3344444 999999999987532 233444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.61  E-value=2.1e-08  Score=96.58  Aligned_cols=105  Identities=21%  Similarity=0.115  Sum_probs=81.5

Q ss_pred             eEEEccCC-CCCCCCchhhHHHHHHhhcCCCCccEEEcCC-CCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccccc
Q 012930          251 ENLSIDIS-SFIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  328 (453)
Q Consensus       251 ~~L~L~~n-~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~  328 (453)
                      ..++.+++ +++.         ++. +..+++|++|+|++ |.+....+..+     ..+++|+.|+|++|.|++..+  
T Consensus        11 ~~v~~~~~n~l~~---------ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~-----~~l~~L~~L~l~~N~l~~~~~--   73 (347)
T 2ifg_A           11 SGLRCTRDGALDS---------LHH-LPGAENLTELYIENQQHLQHLELRDL-----RGLGELRNLTIVKSGLRFVAP--   73 (347)
T ss_dssp             SCEECCSSCCCTT---------TTT-SCSCSCCSEEECCSCSSCCEECGGGS-----CSCCCCSEEECCSSCCCEECT--
T ss_pred             CEEEcCCCCCCCc---------cCC-CCCCCCeeEEEccCCCCCCCcChhHh-----ccccCCCEEECCCCccceeCH--
Confidence            46788887 7776         666 88899999999996 99987443333     568999999999999997544  


Q ss_pred             CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930          329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  386 (453)
                            ..+.   .+++|+.|+|++|+|+.     ++..+.....|+.|+|++|.+.-
T Consensus        74 ------~~~~---~l~~L~~L~l~~N~l~~-----~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           74 ------DAFH---FTPRLSRLNLSFNALES-----LSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             ------TGGG---SCSCCCEEECCSSCCSC-----CCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ------HHhc---CCcCCCEEeCCCCccce-----eCHHHcccCCceEEEeeCCCccC
Confidence                  4555   67899999999999986     55433333349999999999873

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.58  E-value=2.3e-09  Score=105.35  Aligned_cols=223  Identities=10%  Similarity=0.073  Sum_probs=134.5

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.+.+.+. +..+....+..++|+.+.+..+ +.....    ..+.+|++|+.++|++|.++.....++.        
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~~-l~~I~~----~aF~~c~~L~~l~l~~n~l~~I~~~aF~--------  201 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPST-LEQLKE----DIFYYCYNLKKADLSKTKITKLPASTFV--------  201 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCCCCEEECCTT-CCEECS----STTTTCTTCCEEECTTSCCSEECTTTTT--------
T ss_pred             CccEEEeCCC-ccEECHHhcCCCCceEEEeCCC-ccEehH----HHhhCcccCCeeecCCCcceEechhhEe--------
Confidence            5666666554 3334444444467888888652 221111    1256788899999988877765555543        


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                       +.+|+.+.+..+ +..        .-..++.+|++|+.+++..+ +..-....     +.. ++|+.+.+.. .++...
T Consensus       202 -~~~L~~l~lp~~-l~~--------I~~~aF~~~~~L~~l~l~~~-l~~I~~~a-----F~~-~~L~~i~lp~-~i~~I~  263 (401)
T 4fdw_A          202 -YAGIEEVLLPVT-LKE--------IGSQAFLKTSQLKTIEIPEN-VSTIGQEA-----FRE-SGITTVKLPN-GVTNIA  263 (401)
T ss_dssp             -TCCCSEEECCTT-CCE--------ECTTTTTTCTTCCCEECCTT-CCEECTTT-----TTT-CCCSEEEEET-TCCEEC
T ss_pred             -ecccCEEEeCCc-hhe--------ehhhHhhCCCCCCEEecCCC-ccCccccc-----ccc-CCccEEEeCC-CccEEC
Confidence             377888888754 443        12245678888999998875 32211111     233 6788888843 344322


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHH-HHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL-GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  404 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~  404 (453)
                      .           ..|.+|.+|+.+++.+|.+.......+ ..++..|++|+.+++.. .++.      ++.  .++..|+
T Consensus       264 ~-----------~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~------I~~--~aF~~c~  323 (401)
T 4fdw_A          264 S-----------RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI------LGQ--GLLGGNR  323 (401)
T ss_dssp             T-----------TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE------ECT--TTTTTCC
T ss_pred             h-----------hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE------Ehh--hhhcCCC
Confidence            2           334477888888888876541111112 23677888888888884 4554      222  5577778


Q ss_pred             CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      +|+.+.+..+ ++..+    ..++.. . +|+.+++++|.+..
T Consensus       324 ~L~~l~lp~~-l~~I~----~~aF~~-~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          324 KVTQLTIPAN-VTQIN----FSAFNN-T-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             SCCEEEECTT-CCEEC----TTSSSS-S-CCCEEEECCSSCCB
T ss_pred             CccEEEECcc-ccEEc----HHhCCC-C-CCCEEEEcCCCCcc
Confidence            8888888655 44432    223444 3 58888888876543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.11  E-value=2.1e-06  Score=78.82  Aligned_cols=44  Identities=30%  Similarity=0.283  Sum_probs=23.0

Q ss_pred             hCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCCh
Q 012930          306 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK  358 (453)
Q Consensus       306 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~  358 (453)
                      .++++|+.|+|++|.|++...      ++..+.   .+++|+.|+|++|+|++
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~------l~~~~~---~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDD------MSSIVQ---KAPNLKILNLSGNELKS  210 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGG------GTTHHH---HSTTCCEEECTTSCCCS
T ss_pred             hhCCCCCEEECCCCCCCCCcc------chhHHh---hCCCCCEEECCCCccCC
Confidence            445677777777777665211      222222   33455555555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.10  E-value=1.5e-07  Score=92.45  Aligned_cols=223  Identities=8%  Similarity=-0.002  Sum_probs=138.4

Q ss_pred             ccceeccccccchHHH-hhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      .++.+.+.+. +..+. ..+.+|.+|+.++|+.|.+.......    +. +.+|+++.|..+ +...+..++..      
T Consensus       158 ~L~~i~lp~~-l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a----F~-~~~L~~l~lp~~-l~~I~~~aF~~------  224 (401)
T 4fdw_A          158 TVQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKITKLPAST----FV-YAGIEEVLLPVT-LKEIGSQAFLK------  224 (401)
T ss_dssp             CCCEEECCTT-CCEECSSTTTTCTTCCEEECTTSCCSEECTTT----TT-TCCCSEEECCTT-CCEECTTTTTT------
T ss_pred             CceEEEeCCC-ccEehHHHhhCcccCCeeecCCCcceEechhh----Ee-ecccCEEEeCCc-hheehhhHhhC------
Confidence            5666766652 22233 34567799999999988755443322    22 578999999855 55444444443      


Q ss_pred             cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930          245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  324 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  324 (453)
                        |.+|+.+.+..+ ++..+        ..++.+ .+|+.+.+.++ +..-..     ..+..+.+|+.+++.+|.+...
T Consensus       225 --~~~L~~l~l~~~-l~~I~--------~~aF~~-~~L~~i~lp~~-i~~I~~-----~aF~~c~~L~~l~l~~~~~~~~  286 (401)
T 4fdw_A          225 --TSQLKTIEIPEN-VSTIG--------QEAFRE-SGITTVKLPNG-VTNIAS-----RAFYYCPELAEVTTYGSTFNDD  286 (401)
T ss_dssp             --CTTCCCEECCTT-CCEEC--------TTTTTT-CCCSEEEEETT-CCEECT-----TTTTTCTTCCEEEEESSCCCCC
T ss_pred             --CCCCCEEecCCC-ccCcc--------cccccc-CCccEEEeCCC-ccEECh-----hHhhCCCCCCEEEeCCccccCC
Confidence              678999999875 33311        123334 68999999554 333111     1245678999999988876411


Q ss_pred             ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930          325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  404 (453)
Q Consensus       325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~  404 (453)
                      ..    ..++.  ..|.+|.+|+.+++.+ .++.-+    ..++..|++|+.++|..| ++.      ++.  .++..+ 
T Consensus       287 ~~----~~I~~--~aF~~c~~L~~l~l~~-~i~~I~----~~aF~~c~~L~~l~lp~~-l~~------I~~--~aF~~~-  345 (401)
T 4fdw_A          287 PE----AMIHP--YCLEGCPKLARFEIPE-SIRILG----QGLLGGNRKVTQLTIPAN-VTQ------INF--SAFNNT-  345 (401)
T ss_dssp             TT----CEECT--TTTTTCTTCCEECCCT-TCCEEC----TTTTTTCCSCCEEEECTT-CCE------ECT--TSSSSS-
T ss_pred             cc----cEECH--HHhhCCccCCeEEeCC-ceEEEh----hhhhcCCCCccEEEECcc-ccE------EcH--HhCCCC-
Confidence            00    00001  3344788999999984 465411    236778899999999665 544      221  557777 


Q ss_pred             CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930          405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN  444 (453)
Q Consensus       405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  444 (453)
                      +|+.+++.+|.+....    ...+..++..++.|.+..+.
T Consensus       346 ~L~~l~l~~n~~~~l~----~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          346 GIKEVKVEGTTPPQVF----EKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CCCEEEECCSSCCBCC----CSSCCCSCTTCCEEEECGGG
T ss_pred             CCCEEEEcCCCCcccc----cccccCCCCCccEEEeCHHH
Confidence            9999999999866531    22344444567888876654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.09  E-value=9.6e-06  Score=74.41  Aligned_cols=86  Identities=34%  Similarity=0.441  Sum_probs=61.0

Q ss_pred             cCCCCccEEEcCCCCCCh--hHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCC
Q 012930          277 SSGRSLCSLKLRHCHLDR--DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN  354 (453)
Q Consensus       277 ~~~~~L~~L~L~~n~l~~--~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n  354 (453)
                      .++++|+.|+|++|.+.+  ..+..+     ..+++|+.|+|++|.|++.          ..+..+..+ +|++|+|++|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~-----~~l~~L~~L~Ls~N~i~~~----------~~l~~l~~l-~L~~L~L~~N  230 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIV-----QKAPNLKILNLSGNELKSE----------RELDKIKGL-KLEELWLDGN  230 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHH-----HHSTTCCEEECTTSCCCSG----------GGGGGGTTS-CCSEEECTTS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHH-----hhCCCCCEEECCCCccCCc----------hhhhhcccC-CcceEEccCC
Confidence            568899999999998876  222222     2368999999999999873          234444344 8999999999


Q ss_pred             CCChh---hHHHHHHHHhCCCCccEEe
Q 012930          355 NLCKA---DARDLGSALVHIPNLEILD  378 (453)
Q Consensus       355 ~l~~~---~~~~l~~~l~~~~~L~~L~  378 (453)
                      .+...   .-......+..+|+|+.||
T Consensus       231 pl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          231 SLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             cCccccCcchhHHHHHHHHCcccCeEC
Confidence            98751   1113445677888888887

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.29  E-value=0.007  Score=48.75  Aligned_cols=35  Identities=31%  Similarity=0.374  Sum_probs=16.0

Q ss_pred             cccEEEecCCCCChhhHHHHHH-HHhCCCCccEEeCCCCCC
Q 012930          345 SLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTI  384 (453)
Q Consensus       345 ~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i  384 (453)
                      +|++|+|++|+|+.     ++. .+..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~-----l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTA-----LPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSS-----CCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCc-----cChhhhhhccccCEEEecCCCe
Confidence            34455555554443     222 334444555555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.89  E-value=0.002  Score=62.67  Aligned_cols=81  Identities=15%  Similarity=0.192  Sum_probs=43.6

Q ss_pred             CCCcccEEEecCCCCChhhHHHH-HHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhh
Q 012930          342 SLQSLRLLNLRGNNLCKADARDL-GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG  420 (453)
Q Consensus       342 ~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~  420 (453)
                      .+.+|+.+.+..+ ++.     + ..++..+.+|+.+++..+ ++.      ++.  .++..|.+|+.+.+..+ ++..|
T Consensus       295 ~~~~L~~i~l~~~-i~~-----I~~~aF~~c~~L~~i~lp~~-v~~------I~~--~aF~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          295 GCSSLTEVKLLDS-VKF-----IGEEAFESCTSLVSIDLPYL-VEE------IGK--RSFRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             TCTTCCEEEECTT-CCE-----ECTTTTTTCTTCCEECCCTT-CCE------ECT--TTTTTCTTCCEECCCTT-CCEEC
T ss_pred             ccccccccccccc-cce-----echhhhcCCCCCCEEEeCCc-ccE------EhH--HhccCCCCCCEEEECcc-ccEeh
Confidence            5566777776554 332     2 124666777777777543 333      211  44666677777777655 44432


Q ss_pred             HHHHHHHHhcCCCCCcEEECcCC
Q 012930          421 VSQLLDTLSTLRRPPTSLSIADN  443 (453)
Q Consensus       421 ~~~l~~~l~~~~~~L~~L~Ls~N  443 (453)
                          ..++.. ..+|+.+++..+
T Consensus       359 ----~~aF~~-C~~L~~i~lp~~  376 (394)
T 4fs7_A          359 ----ANAFQG-CINLKKVELPKR  376 (394)
T ss_dssp             ----TTTBTT-CTTCCEEEEEGG
T ss_pred             ----HHHhhC-CCCCCEEEECCC
Confidence                123333 345777776543

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=94.74  E-value=0.017  Score=38.14  Aligned_cols=23  Identities=26%  Similarity=0.301  Sum_probs=18.6

Q ss_pred             hhhccCchHHHHHHHhcCChhhh
Q 012930           18 PYVYELPADLFDILLTCLPPLAL   40 (453)
Q Consensus        18 ~~~~~lp~~~~~~i~~~l~~~~l   40 (453)
                      +.+..||.|++..||++||+..+
T Consensus         7 ~~~~~LP~eil~~I~~~L~~~dl   29 (53)
T 1fs1_A            7 VSWDSLPDELLLGIFSCLCLPEL   29 (53)
T ss_dssp             --CCSSCHHHHHHHHTTSCGGGH
T ss_pred             CCHHHCCHHHHHHHHHcCCHHHH
Confidence            56789999999999999996555

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.51  E-value=0.0073  Score=58.65  Aligned_cols=104  Identities=15%  Similarity=0.083  Sum_probs=65.5

Q ss_pred             hcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCC
Q 012930          276 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN  355 (453)
Q Consensus       276 l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~  355 (453)
                      +..+..++.+....+.+.+.        .+..+.+|+.+.+..+ +...+.           ..+.+|.+|+.+++..+ 
T Consensus       272 F~~~~~l~~~~~~~~~i~~~--------~F~~~~~L~~i~l~~~-i~~I~~-----------~aF~~c~~L~~i~lp~~-  330 (394)
T 4fs7_A          272 FYNCSGLKKVIYGSVIVPEK--------TFYGCSSLTEVKLLDS-VKFIGE-----------EAFESCTSLVSIDLPYL-  330 (394)
T ss_dssp             TTTCTTCCEEEECSSEECTT--------TTTTCTTCCEEEECTT-CCEECT-----------TTTTTCTTCCEECCCTT-
T ss_pred             cccccccceeccCceeeccc--------cccccccccccccccc-cceech-----------hhhcCCCCCCEEEeCCc-
Confidence            33455555555554433321        1234677888887654 332211           23447889999999754 


Q ss_pred             CChhhHHHH-HHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCC
Q 012930          356 LCKADARDL-GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC  414 (453)
Q Consensus       356 l~~~~~~~l-~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n  414 (453)
                      ++.     + ..++..|.+|+.+++..| ++.      ++.  .++..|.+|+.+++..+
T Consensus       331 v~~-----I~~~aF~~c~~L~~i~lp~~-l~~------I~~--~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          331 VEE-----IGKRSFRGCTSLSNINFPLS-LRK------IGA--NAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCE-----ECTTTTTTCTTCCEECCCTT-CCE------ECT--TTBTTCTTCCEEEEEGG
T ss_pred             ccE-----EhHHhccCCCCCCEEEECcc-ccE------ehH--HHhhCCCCCCEEEECCC
Confidence            443     3 246888999999999876 544      221  56888899999999765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.45  E-value=0.041  Score=53.27  Aligned_cols=130  Identities=17%  Similarity=0.244  Sum_probs=78.1

Q ss_pred             hhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCC
Q 012930          275 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN  354 (453)
Q Consensus       275 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n  354 (453)
                      ++.++..|+.+.+.++...      +....+.++..|+.+.+.. .++..+.           ..|.+|.+|+.+++..+
T Consensus       260 aF~~c~~L~~i~lp~~~~~------I~~~aF~~c~~L~~i~l~~-~i~~I~~-----------~aF~~c~~L~~i~lp~~  321 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS------IGTGAFMNCPALQDIEFSS-RITELPE-----------SVFAGCISLKSIDIPEG  321 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE------ECTTTTTTCTTCCEEECCT-TCCEECT-----------TTTTTCTTCCEEECCTT
T ss_pred             eeeecccccEEecccccce------ecCcccccccccccccCCC-cccccCc-----------eeecCCCCcCEEEeCCc
Confidence            5667888999988766431      1112235578899999864 3432221           33447899999999765


Q ss_pred             CCChhhHHHH-HHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCC
Q 012930          355 NLCKADARDL-GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRR  433 (453)
Q Consensus       355 ~l~~~~~~~l-~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  433 (453)
                       ++.     + ..++..|.+|+.+.+..+ ++.      ++.  .++.+|.+|+.+++.++..       ...++.. ..
T Consensus       322 -v~~-----I~~~aF~~C~~L~~i~ip~s-v~~------I~~--~aF~~C~~L~~i~~~~~~~-------~~~~~~~-~~  378 (394)
T 4gt6_A          322 -ITQ-----ILDDAFAGCEQLERIAIPSS-VTK------IPE--SAFSNCTALNNIEYSGSRS-------QWNAIST-DS  378 (394)
T ss_dssp             -CCE-----ECTTTTTTCTTCCEEEECTT-CCB------CCG--GGGTTCTTCCEEEESSCHH-------HHHTCBC-CC
T ss_pred             -ccE-----ehHhHhhCCCCCCEEEECcc-cCE------EhH--hHhhCCCCCCEEEECCcee-------ehhhhhc-cC
Confidence             433     2 236888999999999754 433      211  5688899999999988742       1234444 56


Q ss_pred             CCcEEECcCCCC
Q 012930          434 PPTSLSIADNNL  445 (453)
Q Consensus       434 ~L~~L~Ls~N~l  445 (453)
                      .|+.+.+..|.+
T Consensus       379 ~L~~i~i~~~~~  390 (394)
T 4gt6_A          379 GLQNLPVAPGSI  390 (394)
T ss_dssp             CC----------
T ss_pred             CCCEEEeCCCCE
Confidence            699998877654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.03  E-value=0.037  Score=53.53  Aligned_cols=126  Identities=14%  Similarity=0.135  Sum_probs=75.6

Q ss_pred             CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930          247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  326 (453)
Q Consensus       247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  326 (453)
                      |..|+.+.+..+...-         -..++.++++|+.+.+..+ +.. .    ....+..+.+|+.++|..+ ++..+.
T Consensus       264 c~~L~~i~lp~~~~~I---------~~~aF~~c~~L~~i~l~~~-i~~-I----~~~aF~~c~~L~~i~lp~~-v~~I~~  327 (394)
T 4gt6_A          264 CAYLASVKMPDSVVSI---------GTGAFMNCPALQDIEFSSR-ITE-L----PESVFAGCISLKSIDIPEG-ITQILD  327 (394)
T ss_dssp             CSSCCEEECCTTCCEE---------CTTTTTTCTTCCEEECCTT-CCE-E----CTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred             cccccEEeccccccee---------cCcccccccccccccCCCc-ccc-c----CceeecCCCCcCEEEeCCc-ccEehH
Confidence            5677788776543211         1235668899999999753 332 1    1122456789999999765 432222


Q ss_pred             ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHH-HHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930          327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL-GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  405 (453)
Q Consensus       327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~  405 (453)
                                 ..|.+|.+|+.+.+..+ ++.     + ..++..|.+|+.+++.++...       .    .++..+..
T Consensus       328 -----------~aF~~C~~L~~i~ip~s-v~~-----I~~~aF~~C~~L~~i~~~~~~~~-------~----~~~~~~~~  379 (394)
T 4gt6_A          328 -----------DAFAGCEQLERIAIPSS-VTK-----IPESAFSNCTALNNIEYSGSRSQ-------W----NAISTDSG  379 (394)
T ss_dssp             -----------TTTTTCTTCCEEEECTT-CCB-----CCGGGGTTCTTCCEEEESSCHHH-------H----HTCBCCCC
T ss_pred             -----------hHhhCCCCCCEEEECcc-cCE-----EhHhHhhCCCCCCEEEECCceee-------h----hhhhccCC
Confidence                       34448899999999765 443     2 246889999999999987432       2    34667788


Q ss_pred             ccEEEccCCCC
Q 012930          406 LVELYLENCEL  416 (453)
Q Consensus       406 L~~L~L~~n~l  416 (453)
                      |+.+.+..+.+
T Consensus       380 L~~i~i~~~~~  390 (394)
T 4gt6_A          380 LQNLPVAPGSI  390 (394)
T ss_dssp             C----------
T ss_pred             CCEEEeCCCCE
Confidence            99988876643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.42  E-value=0.047  Score=43.79  Aligned_cols=69  Identities=19%  Similarity=0.136  Sum_probs=40.9

Q ss_pred             cEEEcCCCCCC-hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCC-hhh
Q 012930          283 CSLKLRHCHLD-RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC-KAD  360 (453)
Q Consensus       283 ~~L~L~~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~-~~~  360 (453)
                      ..++.+++.++ ...|..+       ..+|+.|+|++|.|+....        ..+.   .+++|++|+|++|.+. +-.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l-------p~~l~~L~Ls~N~l~~l~~--------~~f~---~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF-------PVDTTELVLTGNNLTALPP--------GLLD---ALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC-------CTTCSEEECTTSCCSSCCT--------TTGG---GCTTCCEEECCSSCCBCSGG
T ss_pred             CEEEeCCCCCccccCCCCC-------CcCCCEEECCCCcCCccCh--------hhhh---hccccCEEEecCCCeeccCc
Confidence            35677777765 1244333       4578888888888875322        2333   5677888888888664 222


Q ss_pred             HHHHHHHHh
Q 012930          361 ARDLGSALV  369 (453)
Q Consensus       361 ~~~l~~~l~  369 (453)
                      +..+...+.
T Consensus        73 l~~l~~wl~   81 (130)
T 3rfe_A           73 LVPLRAWLA   81 (130)
T ss_dssp             GHHHHHHHH
T ss_pred             cHHHHHHHH
Confidence            333444444

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=92.50  E-value=0.14  Score=47.16  Aligned_cols=65  Identities=25%  Similarity=0.255  Sum_probs=40.3

Q ss_pred             hhhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCCCCCccccccccccccC----CchHHHHHHHhcccCC--CCC
Q 012930           18 PYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYG----NFNTVWKKLFKTRWSG--FTD   91 (453)
Q Consensus        18 ~~~~~lp~~~~~~i~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~----~~~~~w~~~~~~~w~~--~~~   91 (453)
                      ..+..||+|++..||++||+..|                     ..+++.+||.|    .....|++.+..++..  ...
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L---------------------~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~~  107 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATEL---------------------VQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSA  107 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHH---------------------HHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC---
T ss_pred             cChhhCCHHHHHHHHHcCCHHHH---------------------HHHHHHHhHHHHHHhcChHHHHHHhhccCccccccc
Confidence            56789999999999999998877                     22333344443    2345577766555322  111


Q ss_pred             CCCCchhHHHHH
Q 012930           92 QIEPVDWQQRYW  103 (453)
Q Consensus        92 ~~~~~~~~~~~~  103 (453)
                      .....+|++.|.
T Consensus       108 ~~~~~~Wk~~y~  119 (297)
T 2e31_A          108 DEERDHWQQFYF  119 (297)
T ss_dssp             --CCSCHHHHHH
T ss_pred             CCCCCChhhhhe
Confidence            114567999885

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=88.89  E-value=0.2  Score=47.85  Aligned_cols=59  Identities=10%  Similarity=0.207  Sum_probs=31.0

Q ss_pred             CCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccC
Q 012930          342 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLEN  413 (453)
Q Consensus       342 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~  413 (453)
                      .|.+|+.+.+.++.++.-+    ..++..|.+|+.+.|..+ ++.      ++.  .++.+|.+|+.+.+..
T Consensus       284 ~c~~L~~i~l~~~~i~~I~----~~aF~~c~~L~~i~lp~~-l~~------I~~--~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETLE----PRVFMDCVKLSSVTLPTA-LKT------IQV--YAFKNCKALSTISYPK  342 (379)
T ss_dssp             TCTTCCEEEECCTTCCEEC----TTTTTTCTTCCEEECCTT-CCE------ECT--TTTTTCTTCCCCCCCT
T ss_pred             cccccccccccccccceeh----hhhhcCCCCCCEEEcCcc-ccE------EHH--HHhhCCCCCCEEEECC
Confidence            5566666666665555311    224556666666666543 322      111  3455566666666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=87.79  E-value=0.12  Score=49.50  Aligned_cols=104  Identities=13%  Similarity=0.101  Sum_probs=68.1

Q ss_pred             CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930          247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  326 (453)
Q Consensus       247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  326 (453)
                      +..|+.+.+..+ ++..        -..++.++.+|+.+.+..+ +.. ..    ...+..+.+|+.+.+..+.++..+.
T Consensus       239 ~~~L~~i~lp~~-v~~I--------~~~aF~~~~~l~~i~l~~~-i~~-i~----~~aF~~c~~L~~i~l~~~~i~~I~~  303 (379)
T 4h09_A          239 MKALDEIAIPKN-VTSI--------GSFLLQNCTALKTLNFYAK-VKT-VP----YLLCSGCSNLTKVVMDNSAIETLEP  303 (379)
T ss_dssp             CSSCCEEEECTT-CCEE--------CTTTTTTCTTCCEEEECCC-CSE-EC----TTTTTTCTTCCEEEECCTTCCEECT
T ss_pred             CccceEEEcCCC-ccEe--------Cccccceeehhcccccccc-cee-cc----ccccccccccccccccccccceehh
Confidence            567888887654 3331        1234567888999988765 322 11    1123557899999998887764333


Q ss_pred             ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHH-HHHhCCCCccEEeCCCC
Q 012930          327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDN  382 (453)
Q Consensus       327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N  382 (453)
                                 ..|.+|.+|+.+.|..+ ++.     ++ .++..|.+|+.+.+..+
T Consensus       304 -----------~aF~~c~~L~~i~lp~~-l~~-----I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          304 -----------RVFMDCVKLSSVTLPTA-LKT-----IQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             -----------TTTTTCTTCCEEECCTT-CCE-----ECTTTTTTCTTCCCCCCCTT
T ss_pred             -----------hhhcCCCCCCEEEcCcc-ccE-----EHHHHhhCCCCCCEEEECCc
Confidence                       34447899999999765 443     22 36888999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	453
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 4e-09
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 13/107 (12%)

Query: 308 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA 367
           S  +  LD+    +               L     LQ  +++ L    L +A  +D+ SA
Sbjct: 1   SLDIQSLDIQCEELS--------DARWAELL--PLLQQCQVVRLDDCGLTEARCKDISSA 50

Query: 368 LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC 414
           L   P L  L++  N + D G+  ++            + +L L+NC
Sbjct: 51  LRVNPALAELNLRSNELGDVGVHCVLQGL---QTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 4e-08
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 324 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT 383
                D        G G+    LR+L L   ++  +    L + L+   +L  LD+S+N 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 384 IEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 424
           + D GI  L+    Q       L +L L +   S     +L
Sbjct: 409 LGDAGILQLVESVRQ---PGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 9e-06
 Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 7/104 (6%)

Query: 274 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 333
                G  L  L L  C +  D      ++ L A+ SL  LDLS N +G      D    
Sbjct: 363 GLGQPGSVLRVLWLADCDVS-DSSCSSLAATLLANHSLRELDLSNNCLG------DAGIL 415

Query: 334 LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL 377
                  +    L  L L      +     L +     P+L ++
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 9e-05
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 373 NLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLR 432
           +++ LDI    + D     L+P   Q          + L++C L+      +   L    
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQ-------CQVVRLDDCGLTEARCKDISSALRVNP 55

Query: 433 RPPTSLSIADNNLG 446
                L++  N LG
Sbjct: 56  A-LAELNLRSNELG 68

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 370 HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLS 429
               L +L ++D  + D    SL           + L EL L N  L   G+ QL++++ 
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLA----ATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 430 TLRRPPTSLSIADNNLG 446
                   L + D    
Sbjct: 423 QPGCLLEQLVLYDIYWS 439

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 345 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 404
           S+   +L+ + +   D + + + L+   +++ + +S NTI  +  R L     +      
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWL----SENIASKK 59

Query: 405 PLVELYLENC 414
            L      + 
Sbjct: 60  DLEIAEFSDI 69

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 342 SLQSLRLLNLRGNNLCKADARDLGSALVH-IPNLEILDISDNTIEDDG 388
               L+ L L+ N +     R L + +   +P+L  L+++ N   ++ 
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 318

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 341 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI 384
               S++ + L GN +    AR L   +    +LEI + SD   
Sbjct: 28  LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 46/358 (12%), Positives = 99/358 (27%), Gaps = 47/358 (13%)

Query: 26  DLFDILLTCLPPLA-LQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKT 84
           +  +  LT + PL  L KL   +   +     +P     N      + N  T    L   
Sbjct: 72  NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 85  RWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQ 144
                 +                          V        ++ +   D   N +    
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 145 QMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHV 204
            +  L    S ++ + Q        +                 + L  L L   + ++  
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGIL----------------TNLDELSLNGNQLKDIG 235

Query: 205 QALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 264
                  + +   L  L+  + ++S          L   +   ++I N+S      +   
Sbjct: 236 T------LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS-----PLAGL 284

Query: 265 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324
            +   +EL        S  S      +L   F  +   S + + + L  L  + N +   
Sbjct: 285 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD- 343

Query: 325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 382
                    + SL    +L ++  L+   N +         + L ++  +  L ++D 
Sbjct: 344 ---------VSSLA---NLTNINWLSAGHNQISDL------TPLANLTRITQLGLNDQ 383

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	453
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.91
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.91
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.88
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.74
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.72
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.69
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.67
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.65
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.64
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.61
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.6
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.6
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.57
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.56
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.53
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.5
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.49
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.47
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.47
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.46
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.46
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.3
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.27
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.27
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.25
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.25
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.25
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.18
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.1
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.09
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.05
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.89
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.85
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.75
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.65
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.18
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.25
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	95.94
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	92.76
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	84.66

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.91  E-value=5e-23  Score=197.44  Aligned_cols=270  Identities=16%  Similarity=0.111  Sum_probs=209.5

Q ss_pred             ccceeccccccch-----HHHhhhhcCCCccEEEeccccCh-------HHHHHHHHHHHhcCCCccEEEcCCCCCChhHH
Q 012930          166 YARCLRLQNALCV-----EETCQLLRESKLQSLVLRWIRFE-------EHVQALCKLLIQNSETLASLEFLHCKLSPSFV  233 (453)
Q Consensus       166 ~l~~l~L~~~~~~-----~~~~~l~~~~~L~~L~Ls~~~~~-------~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~  233 (453)
                      .++.++++++.+.     .+...+...++|+.++++++...       ..... +...+..+++|++|+|++|.+++.+.
T Consensus        32 ~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          32 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL-LLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH-HHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHH-HHHHHhhCCCcccccccccccccccc
Confidence            3666677766543     24445566799999999876532       11222 23334567899999999999999999


Q ss_pred             HHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHH-----hhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCC
Q 012930          234 EGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS-----FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEAS  308 (453)
Q Consensus       234 ~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~-----~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  308 (453)
                      ..+.+.+...    ++|+.|++++|.+...+...+...+..     .....+.|+.+++++|.+++.+...++.++.. .
T Consensus       111 ~~l~~~l~~~----~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~-~  185 (344)
T d2ca6a1         111 EPLIDFLSKH----TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS-H  185 (344)
T ss_dssp             HHHHHHHHHC----TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH-C
T ss_pred             cchhhhhccc----ccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh-h
Confidence            9999888774    889999999999877554433332222     22467899999999999999899888887755 4


Q ss_pred             CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhH
Q 012930          309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG  388 (453)
Q Consensus       309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  388 (453)
                      +.|++|++++|.+++.+.   ...+...+.   .+++|+.|+|++|.+++.|++.+...+..+++|++|+|++|.|++.|
T Consensus       186 ~~L~~L~L~~n~i~~~g~---~~~l~~~l~---~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g  259 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGI---EHLLLEGLA---YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  259 (344)
T ss_dssp             TTCCEEECCSSCCCHHHH---HHHHHTTGG---GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             hhhccccccccccccccc---ccchhhhhc---chhhhcccccccccccccccccccccccccccchhhhhhcCccCchh
Confidence            899999999999986322   001122233   67899999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930          389 IRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  449 (453)
Q Consensus       389 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  449 (453)
                      +..++..+..  .....|++|++++|+|+..|+..+...+....+.|++|+|++|.++++.
T Consensus       260 ~~~l~~~l~~--~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         260 AAAVVDAFSK--LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             HHHHHHHHHT--CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             hHHHHHHhhh--ccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            9999875421  2347899999999999999999999999742456999999999997653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.91  E-value=5.4e-23  Score=197.23  Aligned_cols=256  Identities=20%  Similarity=0.206  Sum_probs=206.6

Q ss_pred             cchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCC------hhHHHHHHHHhhccccCCcc
Q 012930          176 LCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLS------PSFVEGICRSLCSKRKRIHK  249 (453)
Q Consensus       176 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~------~~~~~~l~~~L~~~~~~~~~  249 (453)
                      ....+...+.....|++|+|++|.+.......+...+...++|+.++++++...      ..+...+++.+..    +++
T Consensus        19 ~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~----~~~   94 (344)
T d2ca6a1          19 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK----CPK   94 (344)
T ss_dssp             HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT----CTT
T ss_pred             HHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhh----CCC
Confidence            334455667778999999999998765544444445567799999999987543      3455666777665    488


Q ss_pred             eeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHh--------hCCCCCCEEEcCCCCC
Q 012930          250 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL--------EASSSLSILDLSGNSI  321 (453)
Q Consensus       250 L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~--------~~~~~L~~L~Ls~n~l  321 (453)
                      |+.|++++|.++..++.    .+...+..+++|++|++++|.+...+...++.++.        ...+.|+.+++++|.+
T Consensus        95 L~~L~L~~n~i~~~~~~----~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          95 LHTVRLSDNAFGPTAQE----PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             CCEEECCSCCCCTTTHH----HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             ccccccccccccccccc----chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            99999999999997766    67777888999999999999998887777776653        3467899999999999


Q ss_pred             CCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHH-HHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhc
Q 012930          322 GGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARD-LGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS  400 (453)
Q Consensus       322 ~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l  400 (453)
                      ++.+    ...+...+.   .+++|++|+|++|.|++.|+.. +...+..+++|+.|+|++|.+++.|+..+.+    .+
T Consensus       171 ~~~~----~~~l~~~l~---~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~----~l  239 (344)
T d2ca6a1         171 ENGS----MKEWAKTFQ---SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI----AL  239 (344)
T ss_dssp             TGGG----HHHHHHHHH---HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH----HG
T ss_pred             cccc----cccccchhh---hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc----cc
Confidence            8533    233455555   5678999999999999988654 5667889999999999999999999888874    46


Q ss_pred             CCCCCccEEEccCCCCChhhHHHHHHHHhcC-CCCCcEEECcCCCCCcccc
Q 012930          401 ERCNPLVELYLENCELSGRGVSQLLDTLSTL-RRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       401 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~~~~~  450 (453)
                      ..+++|++|+|++|.|++.|+..+++.+... +.+|++|++++|+|++++.
T Consensus       240 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~  290 (344)
T d2ca6a1         240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  290 (344)
T ss_dssp             GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             cccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH
Confidence            7779999999999999999999999999763 4569999999999998764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.3e-23  Score=203.95  Aligned_cols=104  Identities=27%  Similarity=0.334  Sum_probs=86.7

Q ss_pred             CCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHH
Q 012930          343 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVS  422 (453)
Q Consensus       343 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  422 (453)
                      .+.|+.+++++|.+++.++..++..+..+++|++|+|++|+|+++|+..++..+   ....+.|++|+|++|.|++.|+.
T Consensus       311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l---~~~~~~L~~L~Ls~n~i~~~~~~  387 (460)
T d1z7xw1         311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL---GQPGSVLRVLWLADCDVSDSSCS  387 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH---TSTTCCCCEEECTTSCCCHHHHH
T ss_pred             ccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhh---hcccCCCCEEECCCCCCChHHHH
Confidence            357888888888888888888888888888999999999999998888887533   23457799999999999999988


Q ss_pred             HHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          423 QLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       423 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      ++++.+.. +++|++|||++|+|+++|+
T Consensus       388 ~l~~~l~~-~~~L~~L~Ls~N~i~~~g~  414 (460)
T d1z7xw1         388 SLAATLLA-NHSLRELDLSNNCLGDAGI  414 (460)
T ss_dssp             HHHHHHHH-CCCCCEEECCSSSCCHHHH
T ss_pred             HHHHHHhc-CCCCCEEECCCCcCCHHHH
Confidence            89888888 5779999999999988765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.6e-22  Score=194.75  Aligned_cols=274  Identities=20%  Similarity=0.152  Sum_probs=180.9

Q ss_pred             ccceeccccccchH-----HHhhhhc-CCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHH
Q 012930          166 YARCLRLQNALCVE-----ETCQLLR-ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRS  239 (453)
Q Consensus       166 ~l~~l~L~~~~~~~-----~~~~l~~-~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  239 (453)
                      .++.|+++++.+..     +...+.. ..+|++|+|++|.++......+...+..+++|++|++++|.+++.++..+...
T Consensus        56 ~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~  135 (460)
T d1z7xw1          56 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG  135 (460)
T ss_dssp             TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhc
Confidence            47888888877653     2222222 25799999999887665444455556678899999999999888777777665


Q ss_pred             hhcccc-------------------------CCcce-----------------------------eEEEccCCCCCCCCc
Q 012930          240 LCSKRK-------------------------RIHKI-----------------------------ENLSIDISSFIENCP  265 (453)
Q Consensus       240 L~~~~~-------------------------~~~~L-----------------------------~~L~L~~n~l~~~~~  265 (453)
                      +.....                         ....+                             +.+.+..+.+...++
T Consensus       136 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~  215 (460)
T d1z7xw1         136 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC  215 (460)
T ss_dssp             HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred             ccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            432110                         00111                             122222222221111


Q ss_pred             hhh-----------------------------------------------------HHHHHHhhcCCCCccEEEcCCCCC
Q 012930          266 SSV-----------------------------------------------------VVELVSFLSSGRSLCSLKLRHCHL  292 (453)
Q Consensus       266 ~~i-----------------------------------------------------~~~l~~~l~~~~~L~~L~L~~n~l  292 (453)
                      ...                                                     .......+..++.++.+++++|.+
T Consensus       216 ~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i  295 (460)
T d1z7xw1         216 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  295 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             hcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            100                                                     011222233444555555555555


Q ss_pred             ChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHh-CC
Q 012930          293 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALV-HI  371 (453)
Q Consensus       293 ~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~  371 (453)
                      ++.++..++..+....+.|+.+++++|.+++.+    ...+...+.   .+++|++|+|++|+|+++|+..+++.+. ..
T Consensus       296 ~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~----~~~l~~~~~---~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~  368 (460)
T d1z7xw1         296 GDEGARLLCETLLEPGCQLESLWVKSCSFTAAC----CSHFSSVLA---QNRFLLELQISNNRLEDAGVRELCQGLGQPG  368 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG----HHHHHHHHH---HCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred             cccccchhhccccccccccccccccccchhhhh----hhhcccccc---cccchhhhheeeecccCcccchhhhhhhccc
Confidence            555555555555444456666666666665422    122333333   4578999999999999999999999887 46


Q ss_pred             CCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930          372 PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  450 (453)
Q Consensus       372 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  450 (453)
                      +.|+.|+|++|.|++.|+.+++.    .+..+++|++|+|++|+|++.|+..+++.+......|+.|++++|.+.+++.
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~----~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~  443 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAA----TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  443 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHH----HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             CCCCEEECCCCCCChHHHHHHHH----HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHH
Confidence            78999999999999999888874    3556689999999999999999999999998744469999999999987653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1e-17  Score=155.42  Aligned_cols=212  Identities=18%  Similarity=0.194  Sum_probs=148.8

Q ss_pred             cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCC-CCCCCC
Q 012930          186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-SFIENC  264 (453)
Q Consensus       186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n-~l~~~~  264 (453)
                      ...+|++|+++++.++..   ....++.++++|++|+|++|.+++..+..+++        +++|++|++++| .+++  
T Consensus        44 ~~~~L~~LdLs~~~i~~~---~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~--------~~~L~~L~Ls~c~~itd--  110 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK--------NSNLVRLNLSGCSGFSE--  110 (284)
T ss_dssp             CCBCCCEEECTTCEECHH---HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT--------CTTCSEEECTTCBSCCH--
T ss_pred             cCCCCCEEECCCCccCHH---HHHHHHHhCCCcccccccccCCCcHHHHHHhc--------CCCCcCccccccccccc--
Confidence            446789999988875432   23344778899999999999998888877764        588999999886 5554  


Q ss_pred             chhhHHHHHHhhcCCCCccEEEcCCC-CCChhHHHHHHHHHhhCCCCCCEEEcCCCC--CCCcccccCcCchHHhhcCCC
Q 012930          265 PSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNS--IGGWLSKYDRSGPLFSLGAGK  341 (453)
Q Consensus       265 ~~~i~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~l~~~~  341 (453)
                           ..+...+.++++|++|++++| .+++.+......   ..+++|+.|+++++.  +++.+       +.....   
T Consensus       111 -----~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~i~~~~-------l~~l~~---  172 (284)
T d2astb2         111 -----FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA---HVSETITQLNLSGYRKNLQKSD-------LSTLVR---  172 (284)
T ss_dssp             -----HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH---HSCTTCCEEECCSCGGGSCHHH-------HHHHHH---
T ss_pred             -----cccchhhHHHHhccccccccccccccccchhhhc---ccccccchhhhccccccccccc-------cccccc---
Confidence                 134445567889999999987 566655544332   345789999998763  55421       222223   


Q ss_pred             CCCcccEEEecCC-CCChhhHHHHHHHHhCCCCccEEeCCCC-CCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChh
Q 012930          342 SLQSLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDN-TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR  419 (453)
Q Consensus       342 ~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~  419 (453)
                      ++++|++|++++| .+++.++    ..+..+++|++|++++| .|++.|+..+        ..+++|++|++++| +++.
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~----~~l~~~~~L~~L~L~~C~~i~~~~l~~L--------~~~~~L~~L~l~~~-~~d~  239 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCF----QEFFQLNYLQHLSLSRCYDIIPETLLEL--------GEIPTLKTLQVFGI-VPDG  239 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTCTTCCGGGGGGG--------GGCTTCCEEECTTS-SCTT
T ss_pred             ccccccccccccccCCCchhh----hhhcccCcCCEEECCCCCCCChHHHHHH--------hcCCCCCEEeeeCC-CCHH
Confidence            5788999999987 5887543    34567889999999984 7888764443        45688999999988 7888


Q ss_pred             hHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930          420 GVSQLLDTLSTLRRPPTSLSIADNNLGRF  448 (453)
Q Consensus       420 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  448 (453)
                      ++..+++.++.    |+   +.++.+++.
T Consensus       240 ~l~~l~~~lp~----L~---i~~~~ls~~  261 (284)
T d2astb2         240 TLQLLKEALPH----LQ---INCSHFTTI  261 (284)
T ss_dssp             CHHHHHHHSTT----SE---ESCCCSCCT
T ss_pred             HHHHHHHhCcc----cc---ccCccCCCC
Confidence            77777666544    33   456666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.72  E-value=5.2e-20  Score=173.72  Aligned_cols=234  Identities=18%  Similarity=0.132  Sum_probs=139.6

Q ss_pred             cceeccccccch---HHHhhhhcCCCccEEEecc-ccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhc
Q 012930          167 ARCLRLQNALCV---EETCQLLRESKLQSLVLRW-IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS  242 (453)
Q Consensus       167 l~~l~L~~~~~~---~~~~~l~~~~~L~~L~Ls~-~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~  242 (453)
                      +..++|.++...   .++..+.++++|++|+|++ |.+.+.++    ..+.++++|++|+|++|++.+..+..+..    
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP----~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~----  123 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQ----  123 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC----GGGGGCTTCSEEEEEEECCEEECCGGGGG----
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccc----cccccccccchhhhccccccccccccccc----
Confidence            555666655443   3556777778888888875 45443222    12456778888888888776654444333    


Q ss_pred             cccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCC-CCEEEcCCCCC
Q 012930          243 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSS-LSILDLSGNSI  321 (453)
Q Consensus       243 ~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~-L~~L~Ls~n~l  321 (453)
                          +..|+.++++.|.+..        .++..+.+++.|+.+++++|.+.+..+..+.     .+.. ++.+++++|++
T Consensus       124 ----~~~L~~l~l~~N~~~~--------~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-----~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         124 ----IKTLVTLDFSYNALSG--------TLPPSISSLPNLVGITFDGNRISGAIPDSYG-----SFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ----CTTCCEEECCSSEEES--------CCCGGGGGCTTCCEEECCSSCCEEECCGGGG-----CCCTTCCEEECCSSEE
T ss_pred             ----hhhhcccccccccccc--------cCchhhccCcccceeeccccccccccccccc-----cccccccccccccccc
Confidence                4677788888777666        4556677778888888888877765554432     2333 47777777776


Q ss_pred             CCcccccC---------------cCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930          322 GGWLSKYD---------------RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       322 ~~~~~~~~---------------~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  386 (453)
                      ++..+...               .+.++..+.   .+.+++.+++++|.+..     .+..+..+++|+.|+|++|++++
T Consensus       187 ~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~---~~~~l~~l~~~~~~l~~-----~~~~~~~~~~L~~L~Ls~N~l~g  258 (313)
T d1ogqa_         187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFG---SDKNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             EEECCGGGGGCCCSEEECCSSEEEECCGGGCC---TTSCCSEEECCSSEECC-----BGGGCCCCTTCCEEECCSSCCEE
T ss_pred             cccccccccccccccccccccccccccccccc---ccccccccccccccccc-----cccccccccccccccCccCeecc
Confidence            65333100               001122222   44667777777776654     22345666777777777777764


Q ss_pred             hHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCC-CCc
Q 012930          387 DGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN-LGR  447 (453)
Q Consensus       387 ~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~  447 (453)
                      .     +|   ..++.+++|++|+|++|+|+..    +++ +..+ ++|+.+++++|+ +.+
T Consensus       259 ~-----iP---~~l~~L~~L~~L~Ls~N~l~g~----iP~-~~~L-~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         259 T-----LP---QGLTQLKFLHSLNVSFNNLCGE----IPQ-GGNL-QRFDVSAYANNKCLCG  306 (313)
T ss_dssp             C-----CC---GGGGGCTTCCEEECCSSEEEEE----CCC-STTG-GGSCGGGTCSSSEEES
T ss_pred             c-----CC---hHHhCCCCCCEEECcCCccccc----CCC-cccC-CCCCHHHhCCCccccC
Confidence            3     55   4466667777777777776642    222 2221 336667777776 444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.5e-16  Score=145.98  Aligned_cols=191  Identities=23%  Similarity=0.285  Sum_probs=148.1

Q ss_pred             cCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCC-CC
Q 012930          214 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HL  292 (453)
Q Consensus       214 ~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n-~l  292 (453)
                      ...+|++|++++|.+++..+..+...       +++|++|++++|.+++        .....+..+++|++|++++| .+
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~-------c~~L~~L~L~~~~l~~--------~~~~~l~~~~~L~~L~Ls~c~~i  108 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQ-------CSKLQNLSLEGLRLSD--------PIVNTLAKNSNLVRLNLSGCSGF  108 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTT-------BCCCSEEECTTCBCCH--------HHHHHHTTCTTCSEEECTTCBSC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHh-------CCCcccccccccCCCc--------HHHHHHhcCCCCcCccccccccc
Confidence            34589999999999998887776543       7899999999999887        67788889999999999996 78


Q ss_pred             ChhHHHHHHHHHhhCCCCCCEEEcCCCC-CCCcccccCcCchHHhhcCCCCCCcccEEEecCC--CCChhhHHHHHHHHh
Q 012930          293 DRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN--NLCKADARDLGSALV  369 (453)
Q Consensus       293 ~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~  369 (453)
                      ++.+...+++.    +++|++|++++|. +++.+       +...+..  .++.|+.|+++++  .+++.++..+   +.
T Consensus       109 td~~l~~l~~~----~~~L~~L~ls~c~~~~~~~-------~~~~~~~--~~~~L~~L~l~~~~~~i~~~~l~~l---~~  172 (284)
T d2astb2         109 SEFALQTLLSS----CSRLDELNLSWCFDFTEKH-------VQVAVAH--VSETITQLNLSGYRKNLQKSDLSTL---VR  172 (284)
T ss_dssp             CHHHHHHHHHH----CTTCCEEECCCCTTCCHHH-------HHHHHHH--SCTTCCEEECCSCGGGSCHHHHHHH---HH
T ss_pred             cccccchhhHH----HHhcccccccccccccccc-------chhhhcc--cccccchhhhccccccccccccccc---cc
Confidence            88777777554    7899999999974 65422       2223332  3478999999987  5888765444   56


Q ss_pred             CCCCccEEeCCCC-CCChhHHHhHHHHHHhhcCCCCCccEEEccCC-CCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          370 HIPNLEILDISDN-TIEDDGIRSLIPYFVQASERCNPLVELYLENC-ELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       370 ~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      .+++|++|++++| .+++.++..+        ..+++|++|++++| .+++.+...    +.. .++|+.|+++++ +++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l--------~~~~~L~~L~L~~C~~i~~~~l~~----L~~-~~~L~~L~l~~~-~~d  238 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEF--------FQLNYLQHLSLSRCYDIIPETLLE----LGE-IPTLKTLQVFGI-VPD  238 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGG--------GGCTTCCEEECTTCTTCCGGGGGG----GGG-CTTCCEEECTTS-SCT
T ss_pred             ccccccccccccccCCCchhhhhh--------cccCcCCEEECCCCCCCChHHHHH----Hhc-CCCCCEEeeeCC-CCH
Confidence            7899999999986 5888765444        45689999999997 689876544    455 356999999988 666


Q ss_pred             cc
Q 012930          448 FC  449 (453)
Q Consensus       448 ~~  449 (453)
                      .+
T Consensus       239 ~~  240 (284)
T d2astb2         239 GT  240 (284)
T ss_dssp             TC
T ss_pred             HH
Confidence            54

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-17  Score=154.77  Aligned_cols=206  Identities=20%  Similarity=0.191  Sum_probs=116.8

Q ss_pred             CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEcc-CCCCCCCCch
Q 012930          188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSID-ISSFIENCPS  266 (453)
Q Consensus       188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~-~n~l~~~~~~  266 (453)
                      +.+++|+|++|.++.....    .+.++++|++|++++|.+.......+..        ...++.+... .+.+..    
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~ls~n~l~~i~~~~~~~--------~~~~~~l~~~~~~~~~~----   95 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAFTG--------LALLEQLDLSDNAQLRS----   95 (284)
T ss_dssp             TTCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTT--------CTTCCEEECCSCTTCCC----
T ss_pred             CCCCEEECcCCcCCCCCHH----Hhhccccccccccccccccccccccccc--------ccccccccccccccccc----
Confidence            4566777777765443221    2456667777777777666544333322        3455555543 333433    


Q ss_pred             hhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcc
Q 012930          267 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  346 (453)
Q Consensus       267 ~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L  346 (453)
                          .-+..+.++++|++|++++|.+.......     .....+|+.+++++|.+++..+        ..+   ..+++|
T Consensus        96 ----l~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~~~~L~~l~l~~N~l~~i~~--------~~f---~~~~~L  155 (284)
T d1ozna_          96 ----VDPATFHGLGRLHTLHLDRCGLQELGPGL-----FRGLAALQYLYLQDNALQALPD--------DTF---RDLGNL  155 (284)
T ss_dssp             ----CCTTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT--------TTT---TTCTTC
T ss_pred             ----ccchhhcccccCCEEecCCcccccccccc-----cchhcccchhhhccccccccCh--------hHh---ccccch
Confidence                12334556677777777777664422211     2335667777777777665322        222   245667


Q ss_pred             cEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHH
Q 012930          347 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD  426 (453)
Q Consensus       347 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~  426 (453)
                      +.|++++|+++.    ..+.++..+++|+.+++++|.+++.     .|   ..+..+++|++|++++|.++..    ...
T Consensus       156 ~~L~l~~N~l~~----l~~~~f~~l~~L~~l~l~~N~l~~i-----~~---~~f~~l~~L~~L~l~~N~i~~~----~~~  219 (284)
T d1ozna_         156 THLFLHGNRISS----VPERAFRGLHSLDRLLLHQNRVAHV-----HP---HAFRDLGRLMTLYLFANNLSAL----PTE  219 (284)
T ss_dssp             CEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEE-----CT---TTTTTCTTCCEEECCSSCCSCC----CHH
T ss_pred             hhcccccCcccc----cchhhhccccccchhhhhhcccccc-----Ch---hHhhhhhhcccccccccccccc----ccc
Confidence            777777777665    2234556667777777777777652     23   4466666777777777776664    234


Q ss_pred             HHhcCCCCCcEEECcCCCCC
Q 012930          427 TLSTLRRPPTSLSIADNNLG  446 (453)
Q Consensus       427 ~l~~~~~~L~~L~Ls~N~l~  446 (453)
                      .+.. ..+|++|++++|++.
T Consensus       220 ~~~~-~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         220 ALAP-LRALQYLRLNDNPWV  238 (284)
T ss_dssp             HHTT-CTTCCEEECCSSCEE
T ss_pred             cccc-ccccCEEEecCCCCC
Confidence            4444 344777777777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.3e-17  Score=153.26  Aligned_cols=207  Identities=17%  Similarity=0.094  Sum_probs=147.1

Q ss_pred             eccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcc
Q 012930          170 LRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHK  249 (453)
Q Consensus       170 l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~  249 (453)
                      .+.++..++++|..+.  +++++|+|++|.+......    .+.++++|++|+|++|+|+....  ++        .+++
T Consensus        15 v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~----~f~~l~~L~~L~L~~N~l~~l~~--~~--------~l~~   78 (266)
T d1p9ag_          15 VNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTKLQV--DG--------TLPV   78 (266)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG----GGTTCTTCCEEECTTSCCCEEEC--CS--------CCTT
T ss_pred             EEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHH----Hhhcccccccccccccccccccc--cc--------cccc
Confidence            3445555555554332  5789999999987643322    25678899999999999885321  11        1588


Q ss_pred             eeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccC
Q 012930          250 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD  329 (453)
Q Consensus       250 L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~  329 (453)
                      |++|++++|++..         .+..+..+++|+.|++++|.+.......     ...+.++++|++++|.++...+   
T Consensus        79 L~~L~Ls~N~l~~---------~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----~~~l~~l~~L~l~~n~l~~l~~---  141 (266)
T d1p9ag_          79 LGTLDLSHNQLQS---------LPLLGQTLPALTVLDVSFNRLTSLPLGA-----LRGLGELQELYLKGNELKTLPP---  141 (266)
T ss_dssp             CCEEECCSSCCSS---------CCCCTTTCTTCCEEECCSSCCCCCCSST-----TTTCTTCCEEECTTSCCCCCCT---
T ss_pred             ccccccccccccc---------cccccccccccccccccccccceeeccc-----cccccccccccccccccceecc---
Confidence            9999999999876         3445678899999999999876632222     2346889999999999886332   


Q ss_pred             cCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEE
Q 012930          330 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL  409 (453)
Q Consensus       330 ~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L  409 (453)
                              ..+..++.|+.|++++|+++.    ..+..+..+++|++|+|++|+|+.      +|   ..+..+++|+.|
T Consensus       142 --------~~~~~l~~l~~l~l~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~L~~------lp---~~~~~~~~L~~L  200 (266)
T d1p9ag_         142 --------GLLTPTPKLEKLSLANNNLTE----LPAGLLNGLENLDTLLLQENSLYT------IP---KGFFGSHLLPFA  200 (266)
T ss_dssp             --------TTTTTCTTCCEEECTTSCCSC----CCTTTTTTCTTCCEEECCSSCCCC------CC---TTTTTTCCCSEE
T ss_pred             --------ccccccccchhcccccccccc----cCccccccccccceeecccCCCcc------cC---hhHCCCCCCCEE
Confidence                    222367889999999999987    234567889999999999999986      66   556677899999


Q ss_pred             EccCCCCChh-hHHHHHHHHhc
Q 012930          410 YLENCELSGR-GVSQLLDTLST  430 (453)
Q Consensus       410 ~L~~n~l~~~-~~~~l~~~l~~  430 (453)
                      +|++|.+... ....+...+..
T Consensus       201 ~L~~Np~~CdC~~~~l~~wl~~  222 (266)
T d1p9ag_         201 FLHGNPWLCNCEILYFRRWLQD  222 (266)
T ss_dssp             ECCSCCBCCSGGGHHHHHHHHH
T ss_pred             EecCCCCCCCcchHHHHHHHHh
Confidence            9999987643 12234454543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.2e-17  Score=150.58  Aligned_cols=200  Identities=18%  Similarity=0.160  Sum_probs=152.5

Q ss_pred             cCCCccEEEeccccChHHHHHHHHHHHhcC-CCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCC
Q 012930          186 RESKLQSLVLRWIRFEEHVQALCKLLIQNS-ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC  264 (453)
Q Consensus       186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~-~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~  264 (453)
                      ....+.+.+.+++.++....        ++ +++++|+|++|.|+...+..+..        +++|++|++++|.++.  
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~--------~lp~~l~~L~Ls~N~i~~l~~~~f~~--------l~~L~~L~L~~N~l~~--   69 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPP--------DLPKDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRAELTK--   69 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCS--------CCCTTCCEEECTTSCCSEEEGGGGTT--------CTTCCEEECTTSCCCE--
T ss_pred             ccCCCeEEEccCCCCCeeCc--------CcCcCCCEEECcCCcCCCcCHHHhhc--------cccccccccccccccc--
Confidence            33556667777777654321        22 47999999999998766655543        5889999999999875  


Q ss_pred             chhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCC
Q 012930          265 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ  344 (453)
Q Consensus       265 ~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~  344 (453)
                             ++ .++.+++|++|+|++|++... +..     +..+++|+.|++++|.+.....           ..+..+.
T Consensus        70 -------l~-~~~~l~~L~~L~Ls~N~l~~~-~~~-----~~~l~~L~~L~l~~~~~~~~~~-----------~~~~~l~  124 (266)
T d1p9ag_          70 -------LQ-VDGTLPVLGTLDLSHNQLQSL-PLL-----GQTLPALTVLDVSFNRLTSLPL-----------GALRGLG  124 (266)
T ss_dssp             -------EE-CCSCCTTCCEEECCSSCCSSC-CCC-----TTTCTTCCEEECCSSCCCCCCS-----------STTTTCT
T ss_pred             -------cc-ccccccccccccccccccccc-ccc-----cccccccccccccccccceeec-----------ccccccc
Confidence                   22 245789999999999998763 222     2457899999999999876333           2233678


Q ss_pred             cccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHH
Q 012930          345 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL  424 (453)
Q Consensus       345 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l  424 (453)
                      ++++|++++|.++.    ..+..+..++.|+.|++++|+|+.      ++.  ..+..+++|++|+|++|+|+.     +
T Consensus       125 ~l~~L~l~~n~l~~----l~~~~~~~l~~l~~l~l~~N~l~~------~~~--~~~~~l~~L~~L~Ls~N~L~~-----l  187 (266)
T d1p9ag_         125 ELQELYLKGNELKT----LPPGLLTPTPKLEKLSLANNNLTE------LPA--GLLNGLENLDTLLLQENSLYT-----I  187 (266)
T ss_dssp             TCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCSC------CCT--TTTTTCTTCCEEECCSSCCCC-----C
T ss_pred             ccccccccccccce----eccccccccccchhcccccccccc------cCc--cccccccccceeecccCCCcc-----c
Confidence            99999999999986    223456678999999999999987      432  557788999999999999997     5


Q ss_pred             HHHHhcCCCCCcEEECcCCCCC
Q 012930          425 LDTLSTLRRPPTSLSIADNNLG  446 (453)
Q Consensus       425 ~~~l~~~~~~L~~L~Ls~N~l~  446 (453)
                      ++.+.. .++|+.|+|++|++.
T Consensus       188 p~~~~~-~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         188 PKGFFG-SHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTT-TCCCSEEECCSCCBC
T ss_pred             ChhHCC-CCCCCEEEecCCCCC
Confidence            666666 466999999999864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.61  E-value=9.1e-19  Score=165.07  Aligned_cols=205  Identities=18%  Similarity=0.206  Sum_probs=137.8

Q ss_pred             ccceecccc-ccch-HHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcc
Q 012930          166 YARCLRLQN-ALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  243 (453)
Q Consensus       166 ~l~~l~L~~-~~~~-~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~  243 (453)
                      +++.|++++ +... .+|..+.++++|++|+|++|.+.......    +..+..|+.+++++|.+....+..+..     
T Consensus        77 ~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~----~~~~~~L~~l~l~~N~~~~~~p~~l~~-----  147 (313)
T d1ogqa_          77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF----LSQIKTLVTLDFSYNALSGTLPPSISS-----  147 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGGG-----
T ss_pred             cccccccccccccccccccccccccccchhhhcccccccccccc----ccchhhhcccccccccccccCchhhcc-----
Confidence            567777764 3333 56777778888888888888765433222    456677888888888666554444433     


Q ss_pred             ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCc-cEEEcCCCCCChhHHHHHHH------------------HH
Q 012930          244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL-CSLKLRHCHLDRDFGRMVFS------------------SL  304 (453)
Q Consensus       244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L-~~L~L~~n~l~~~~~~~l~~------------------~L  304 (453)
                         ++.++.+++++|.+..        .++..+..+..+ +.+++++|++.+..+..+..                  ..
T Consensus       148 ---l~~L~~l~l~~n~l~~--------~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~  216 (313)
T d1ogqa_         148 ---LPNLVGITFDGNRISG--------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL  216 (313)
T ss_dssp             ---CTTCCEEECCSSCCEE--------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGG
T ss_pred             ---Ccccceeecccccccc--------ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence               4777888888887765        344555555554 66667776665433322210                  00


Q ss_pred             hhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCC
Q 012930          305 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI  384 (453)
Q Consensus       305 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i  384 (453)
                      .....+++.+++++|.+.+..         ..++   .+++|+.|+|++|++++    .+|..+..+++|+.|+|++|+|
T Consensus       217 ~~~~~~l~~l~~~~~~l~~~~---------~~~~---~~~~L~~L~Ls~N~l~g----~iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         217 FGSDKNTQKIHLAKNSLAFDL---------GKVG---LSKNLNGLDLRNNRIYG----TLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             CCTTSCCSEEECCSSEECCBG---------GGCC---CCTTCCEEECCSSCCEE----CCCGGGGGCTTCCEEECCSSEE
T ss_pred             ccccccccccccccccccccc---------cccc---cccccccccCccCeecc----cCChHHhCCCCCCEEECcCCcc
Confidence            123455666666666655421         2233   67899999999999997    5899999999999999999999


Q ss_pred             ChhHHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012930          385 EDDGIRSLIPYFVQASERCNPLVELYLENCE  415 (453)
Q Consensus       385 ~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~  415 (453)
                      ++.     +|.    ++.+++|+.+++++|+
T Consensus       281 ~g~-----iP~----~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         281 CGE-----IPQ----GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEE-----CCC----STTGGGSCGGGTCSSS
T ss_pred             ccc-----CCC----cccCCCCCHHHhCCCc
Confidence            853     652    4667889999999997

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=8.5e-17  Score=150.74  Aligned_cols=234  Identities=18%  Similarity=0.172  Sum_probs=148.5

Q ss_pred             ccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930          166 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  244 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~  244 (453)
                      .++.|+++++.+..++. .+.++++|++|++++|.+......    .+.+++.|++|++++|+++......         
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~----~f~~l~~L~~L~l~~n~l~~l~~~~---------   98 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG----AFAPLVKLERLYLSKNQLKELPEKM---------   98 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCSBCCSSC---------
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchh----hhhCCCccCEecccCCccCcCccch---------
Confidence            46667777776666554 345667777777777764433221    1456667777777777665321110         


Q ss_pred             cCCcceeEEEccCCCCCCCCchhh------------------HHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhh
Q 012930          245 KRIHKIENLSIDISSFIENCPSSV------------------VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE  306 (453)
Q Consensus       245 ~~~~~L~~L~L~~n~l~~~~~~~i------------------~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~  306 (453)
                        ...+..|.+.+|.+........                  .......+..+++|+.+++++|.+.. .+..       
T Consensus        99 --~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~-------  168 (305)
T d1xkua_          99 --PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG-------  168 (305)
T ss_dssp             --CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS-------
T ss_pred             --hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcc-------
Confidence              2344555555544433110000                  00122345667788888888887754 2221       


Q ss_pred             CCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930          307 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       307 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  386 (453)
                      ..++|+.|++++|.+....+        ..+.   .++.+++|++++|.++..    .+..+..+++|++|+|++|.|+.
T Consensus       169 ~~~~L~~L~l~~n~~~~~~~--------~~~~---~~~~l~~L~~s~n~l~~~----~~~~~~~l~~L~~L~L~~N~L~~  233 (305)
T d1xkua_         169 LPPSLTELHLDGNKITKVDA--------ASLK---GLNNLAKLGLSFNSISAV----DNGSLANTPHLRELHLNNNKLVK  233 (305)
T ss_dssp             CCTTCSEEECTTSCCCEECT--------GGGT---TCTTCCEEECCSSCCCEE----CTTTGGGSTTCCEEECCSSCCSS
T ss_pred             cCCccCEEECCCCcCCCCCh--------hHhh---cccccccccccccccccc----ccccccccccceeeecccccccc
Confidence            24678888888887775433        3444   678899999999999872    34567789999999999999986


Q ss_pred             hHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHH--HHHHhcCCCCCcEEECcCCCCCc
Q 012930          387 DGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL--LDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       387 ~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l--~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                            +|   .++..+++|++|+|++|+|+..+...+  ...... ..+|+.|+|++|.++.
T Consensus       234 ------lp---~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~-~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         234 ------VP---GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK-KASYSGVSLFSNPVQY  286 (305)
T ss_dssp             ------CC---TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT-SCCCSEEECCSSSSCG
T ss_pred             ------cc---cccccccCCCEEECCCCccCccChhhccCcchhcc-cCCCCEEECCCCcCcc
Confidence                  66   567888999999999999887422111  111222 4569999999999863

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.2e-16  Score=148.24  Aligned_cols=218  Identities=17%  Similarity=0.084  Sum_probs=162.9

Q ss_pred             cccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCC-CCCChhHHHHHHHHhhc
Q 012930          165 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCS  242 (453)
Q Consensus       165 ~~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~L~~  242 (453)
                      ..++.|+|+++.+..++. .+.++++|++|++++|.+......    ...+...+.++.+.. +.++...+..+..    
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~----~~~~~~~~~~l~~~~~~~~~~l~~~~~~~----  103 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVDPATFHG----  103 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSCTTCCCCCTTTTTT----
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccc----cccccccccccccccccccccccchhhcc----
Confidence            457889999998887765 466789999999999986554332    245677888887764 4666555555443    


Q ss_pred             cccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCC
Q 012930          243 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG  322 (453)
Q Consensus       243 ~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~  322 (453)
                          +++|++|++++|.+..        .....+....+|+.+++++|.++...+..     +...++|+.|++++|.+.
T Consensus       104 ----l~~L~~L~l~~n~~~~--------~~~~~~~~~~~L~~l~l~~N~l~~i~~~~-----f~~~~~L~~L~l~~N~l~  166 (284)
T d1ozna_         104 ----LGRLHTLHLDRCGLQE--------LGPGLFRGLAALQYLYLQDNALQALPDDT-----FRDLGNLTHLFLHGNRIS  166 (284)
T ss_dssp             ----CTTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCC
T ss_pred             ----cccCCEEecCCccccc--------ccccccchhcccchhhhccccccccChhH-----hccccchhhcccccCccc
Confidence                5889999999999876        23345567889999999999998733332     245689999999999998


Q ss_pred             CcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCC
Q 012930          323 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER  402 (453)
Q Consensus       323 ~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~  402 (453)
                      ...+        .   .+..+++|+++++++|+++.    ..+..+..+++|+.|++++|.++..     .+   .++..
T Consensus       167 ~l~~--------~---~f~~l~~L~~l~l~~N~l~~----i~~~~f~~l~~L~~L~l~~N~i~~~-----~~---~~~~~  223 (284)
T d1ozna_         167 SVPE--------R---AFRGLHSLDRLLLHQNRVAH----VHPHAFRDLGRLMTLYLFANNLSAL-----PT---EALAP  223 (284)
T ss_dssp             EECT--------T---TTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCSCC-----CH---HHHTT
T ss_pred             ccch--------h---hhccccccchhhhhhccccc----cChhHhhhhhhcccccccccccccc-----cc---ccccc
Confidence            6333        2   33378999999999999997    3577889999999999999999873     22   45778


Q ss_pred             CCCccEEEccCCCCChh-hHHHHHHHHhc
Q 012930          403 CNPLVELYLENCELSGR-GVSQLLDTLST  430 (453)
Q Consensus       403 ~~~L~~L~L~~n~l~~~-~~~~l~~~l~~  430 (453)
                      +++|++|++++|.+... ....+...+.+
T Consensus       224 ~~~L~~L~l~~N~l~C~C~~~~l~~~l~~  252 (284)
T d1ozna_         224 LRALQYLRLNDNPWVCDCRARPLWAWLQK  252 (284)
T ss_dssp             CTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred             ccccCEEEecCCCCCCCccchHHHHHHHh
Confidence            89999999999987643 23334444444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=4.4e-16  Score=145.77  Aligned_cols=138  Identities=20%  Similarity=0.186  Sum_probs=105.2

Q ss_pred             CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930          247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  326 (453)
Q Consensus       247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  326 (453)
                      +++|+.+++++|.+.....           ...++|++|++++|......+..+     ..++.++.|++++|.+++..+
T Consensus       149 l~~L~~l~l~~n~l~~l~~-----------~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~l~~L~~s~n~l~~~~~  212 (305)
T d1xkua_         149 MKKLSYIRIADTNITTIPQ-----------GLPPSLTELHLDGNKITKVDAASL-----KGLNNLAKLGLSFNSISAVDN  212 (305)
T ss_dssp             CTTCCEEECCSSCCCSCCS-----------SCCTTCSEEECTTSCCCEECTGGG-----TTCTTCCEEECCSSCCCEECT
T ss_pred             ccccCccccccCCccccCc-----------ccCCccCEEECCCCcCCCCChhHh-----hcccccccccccccccccccc
Confidence            4678999999998876221           135799999999999877555433     457899999999999986433


Q ss_pred             ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCc
Q 012930          327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL  406 (453)
Q Consensus       327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L  406 (453)
                              ..+.   ++++|++|+|++|+|+.     +|.++..+++|+.|+|++|+|+.-+...+.+.  .......+|
T Consensus       213 --------~~~~---~l~~L~~L~L~~N~L~~-----lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~--~~~~~~~~L  274 (305)
T d1xkua_         213 --------GSLA---NTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPP--GYNTKKASY  274 (305)
T ss_dssp             --------TTGG---GSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS--SCCTTSCCC
T ss_pred             --------cccc---ccccceeeecccccccc-----cccccccccCCCEEECCCCccCccChhhccCc--chhcccCCC
Confidence                    3344   67899999999999985     78889999999999999999987322222110  234456889


Q ss_pred             cEEEccCCCCCh
Q 012930          407 VELYLENCELSG  418 (453)
Q Consensus       407 ~~L~L~~n~l~~  418 (453)
                      +.|+|++|.+..
T Consensus       275 ~~L~L~~N~~~~  286 (305)
T d1xkua_         275 SGVSLFSNPVQY  286 (305)
T ss_dssp             SEEECCSSSSCG
T ss_pred             CEEECCCCcCcc
Confidence            999999999865

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=8.3e-15  Score=141.09  Aligned_cols=59  Identities=22%  Similarity=0.314  Sum_probs=33.9

Q ss_pred             cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930          248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  323 (453)
Q Consensus       248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  323 (453)
                      .+|++|++++|.++.         + ..+..+++|+.|++++|.+++..+       +..+++|++|++++|.+++
T Consensus       219 ~~L~~L~l~~n~l~~---------~-~~l~~l~~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~l~~~~l~~  277 (384)
T d2omza2         219 TNLDELSLNGNQLKD---------I-GTLASLTNLTDLDLANNQISNLAP-------LSGLTKLTELKLGANQISN  277 (384)
T ss_dssp             TTCCEEECCSSCCCC---------C-GGGGGCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCCC
T ss_pred             CCCCEEECCCCCCCC---------c-chhhcccccchhccccCccCCCCc-------ccccccCCEeeccCcccCC
Confidence            456666666666554         1 134556666777776666655221       1235667777776666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=8.1e-15  Score=130.93  Aligned_cols=188  Identities=20%  Similarity=0.237  Sum_probs=136.7

Q ss_pred             cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCc
Q 012930          186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  265 (453)
Q Consensus       186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~  265 (453)
                      .+.+|++|++.+|.+... ..     +.++++|++|++++|.+++..+  +..        +.+++.+++++|.++.   
T Consensus        39 ~l~~L~~L~l~~~~i~~l-~~-----l~~l~~L~~L~ls~n~i~~~~~--l~~--------l~~l~~l~~~~n~~~~---   99 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI-EG-----VQYLNNLIGLELKDNQITDLAP--LKN--------LTKITELELSGNPLKN---   99 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC-TT-----GGGCTTCCEEECCSSCCCCCGG--GTT--------CCSCCEEECCSCCCSC---
T ss_pred             HcCCcCEEECCCCCCCcc-hh-----HhcCCCCcEeecCCceeecccc--ccc--------cccccccccccccccc---
Confidence            346788888888876542 11     4578899999999998876432  211        5788999999888776   


Q ss_pred             hhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930          266 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  345 (453)
Q Consensus       266 ~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~  345 (453)
                            + ..+.++++|+.++++++...+...       +...+.++.+.++.+.+....          .+.   .+++
T Consensus       100 ------i-~~l~~l~~L~~l~l~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~----------~~~---~~~~  152 (227)
T d1h6ua2         100 ------V-SAIAGLQSIKTLDLTSTQITDVTP-------LAGLSNLQVLYLDLNQITNIS----------PLA---GLTN  152 (227)
T ss_dssp             ------C-GGGTTCTTCCEEECTTSCCCCCGG-------GTTCTTCCEEECCSSCCCCCG----------GGG---GCTT
T ss_pred             ------c-ccccccccccccccccccccccch-------hccccchhhhhchhhhhchhh----------hhc---cccc
Confidence                  1 245678899999999887765322       123578899999888877531          223   5578


Q ss_pred             ccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHH
Q 012930          346 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL  425 (453)
Q Consensus       346 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~  425 (453)
                      |++|++++|.+++.      ..+..+++|+.|++++|++++      +++    +..+++|++|+|++|+|++.     +
T Consensus       153 L~~L~l~~n~~~~~------~~l~~l~~L~~L~Ls~n~l~~------l~~----l~~l~~L~~L~Ls~N~lt~i-----~  211 (227)
T d1h6ua2         153 LQYLSIGNAQVSDL------TPLANLSKLTTLKADDNKISD------ISP----LASLPNLIEVHLKNNQISDV-----S  211 (227)
T ss_dssp             CCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCC------CGG----GGGCTTCCEEECTTSCCCBC-----G
T ss_pred             cccccccccccccc------hhhcccccceecccCCCccCC------Chh----hcCCCCCCEEECcCCcCCCC-----c
Confidence            99999999988762      237788999999999999987      442    56668999999999999873     2


Q ss_pred             HHHhcCCCCCcEEECcC
Q 012930          426 DTLSTLRRPPTSLSIAD  442 (453)
Q Consensus       426 ~~l~~~~~~L~~L~Ls~  442 (453)
                       .+..+ ++|+.|++++
T Consensus       212 -~l~~l-~~L~~L~lsn  226 (227)
T d1h6ua2         212 -PLANT-SNLFIVTLTN  226 (227)
T ss_dssp             -GGTTC-TTCCEEEEEE
T ss_pred             -ccccC-CCCCEEEeeC
Confidence             25563 5599999863

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.53  E-value=5e-14  Score=119.27  Aligned_cols=104  Identities=13%  Similarity=0.168  Sum_probs=52.6

Q ss_pred             HHHHhhcCCCCccEEEcCCC-CCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEE
Q 012930          271 ELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL  349 (453)
Q Consensus       271 ~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L  349 (453)
                      .+.....+.++|++|+|+++ .+++.+...++.++..+ +.|++|+|++|.+++.    ++..+...+.   ..+.|++|
T Consensus         6 ~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n-~~L~~L~Ls~n~l~~~----~~~~la~~L~---~n~~L~~L   77 (167)
T d1pgva_           6 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDS----EARGLIELIE---TSPSLRVL   77 (167)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHH----HHTTHHHHHH---HCSSCCEE
T ss_pred             HHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhC-Cccceeeccccccchh----HHHHHhhhhh---hcccccce
Confidence            34444455677777777763 47666666666665443 4555555555555421    1222333333   22344444


Q ss_pred             EecCCCCChhhHHHHHHHHhCCCCccEEeCCCC
Q 012930          350 NLRGNNLCKADARDLGSALVHIPNLEILDISDN  382 (453)
Q Consensus       350 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N  382 (453)
                      +|++|.|+++|+..+..++..+++|++|++++|
T Consensus        78 ~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          78 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             eeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            444444444444444444444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=2.5e-14  Score=126.03  Aligned_cols=60  Identities=30%  Similarity=0.448  Sum_probs=27.6

Q ss_pred             CCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          343 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       343 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      ++.++.+++++|.+++.      ..+..+++|+.+++++|++++      ++    .+..+++|++|+|++|+|++
T Consensus       133 l~~l~~l~~~~n~l~~~------~~~~~l~~L~~l~l~~n~l~~------i~----~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         133 LPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD------IV----PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCC------CG----GGTTCTTCCEEECCSSCCCB
T ss_pred             ccccccccccccccccc------ccccccccccccccccccccc------cc----cccCCCCCCEEECCCCCCCC
Confidence            34455555555554431      123344455555555555544      21    13344555555555555544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=4.3e-14  Score=135.97  Aligned_cols=192  Identities=20%  Similarity=0.238  Sum_probs=150.0

Q ss_pred             hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCC
Q 012930          183 QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIE  262 (453)
Q Consensus       183 ~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~  262 (453)
                      ....+++++.+++++|.+.....      ....++|++|++++|.+++..  .+    ..    +++|+.+++++|.++.
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~------~~~~~~L~~L~l~~n~l~~~~--~l----~~----l~~L~~L~l~~n~l~~  255 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDIG--TL----AS----LTNLTDLDLANNQISN  255 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCG--GG----GG----CTTCSEEECCSSCCCC
T ss_pred             ccccccccceeeccCCccCCCCc------ccccCCCCEEECCCCCCCCcc--hh----hc----ccccchhccccCccCC
Confidence            44567899999999998655432      346689999999999988642  22    11    5889999999999887


Q ss_pred             CCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCC
Q 012930          263 NCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS  342 (453)
Q Consensus       263 ~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~  342 (453)
                               ++ .+..+++|++|++++|++.+..+       +..+..++.++++.|.+++.          ..+.   .
T Consensus       256 ---------~~-~~~~~~~L~~L~l~~~~l~~~~~-------~~~~~~l~~l~~~~n~l~~~----------~~~~---~  305 (384)
T d2omza2         256 ---------LA-PLSGLTKLTELKLGANQISNISP-------LAGLTALTNLELNENQLEDI----------SPIS---N  305 (384)
T ss_dssp             ---------CG-GGTTCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCSCC----------GGGG---G
T ss_pred             ---------CC-cccccccCCEeeccCcccCCCCc-------cccccccccccccccccccc----------cccc---h
Confidence                     21 36788999999999999876322       23468999999999998862          2233   5


Q ss_pred             CCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHH
Q 012930          343 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVS  422 (453)
Q Consensus       343 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  422 (453)
                      +++++.|++++|++++     ++ .+..+++|+.|++++|+|++      ++    .+..+++|++|++++|+|++.   
T Consensus       306 ~~~l~~L~ls~n~l~~-----l~-~l~~l~~L~~L~L~~n~l~~------l~----~l~~l~~L~~L~l~~N~l~~l---  366 (384)
T d2omza2         306 LKNLTYLTLYFNNISD-----IS-PVSSLTKLQRLFFANNKVSD------VS----SLANLTNINWLSAGHNQISDL---  366 (384)
T ss_dssp             CTTCSEEECCSSCCSC-----CG-GGGGCTTCCEEECCSSCCCC------CG----GGGGCTTCCEEECCSSCCCBC---
T ss_pred             hcccCeEECCCCCCCC-----Cc-ccccCCCCCEEECCCCCCCC------Ch----hHcCCCCCCEEECCCCcCCCC---
Confidence            6889999999999997     33 37889999999999999987      54    356779999999999999983   


Q ss_pred             HHHHHHhcCCCCCcEEECcCC
Q 012930          423 QLLDTLSTLRRPPTSLSIADN  443 (453)
Q Consensus       423 ~l~~~l~~~~~~L~~L~Ls~N  443 (453)
                        . .+..+ ++|++|+|++|
T Consensus       367 --~-~l~~l-~~L~~L~L~~N  383 (384)
T d2omza2         367 --T-PLANL-TRITQLGLNDQ  383 (384)
T ss_dssp             --G-GGTTC-TTCSEEECCCE
T ss_pred             --h-hhccC-CCCCEeeCCCC
Confidence              2 26664 45999999988

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=4.2e-14  Score=126.21  Aligned_cols=185  Identities=17%  Similarity=0.194  Sum_probs=144.9

Q ss_pred             ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930          166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  245 (453)
Q Consensus       166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~  245 (453)
                      .++.+++.++.+..+ ..+..+++|+.|++++|.+.....      +..+++|+++++++|.++...  .++.       
T Consensus        42 ~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~------l~~l~~l~~l~~~~n~~~~i~--~l~~-------  105 (227)
T d1h6ua2          42 GITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKNVS--AIAG-------  105 (227)
T ss_dssp             TCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSCCG--GGTT-------
T ss_pred             CcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc------ccccccccccccccccccccc--cccc-------
Confidence            577788888877665 457789999999999998665332      568899999999999887532  2322       


Q ss_pred             CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                       +.+|+.++++++.....          ..+...+.+..+.++++.+....+  +     ..+++|+.|++++|.+.+. 
T Consensus       106 -l~~L~~l~l~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~--~-----~~~~~L~~L~l~~n~~~~~-  166 (227)
T d1h6ua2         106 -LQSIKTLDLTSTQITDV----------TPLAGLSNLQVLYLDLNQITNISP--L-----AGLTNLQYLSIGNAQVSDL-  166 (227)
T ss_dssp             -CTTCCEEECTTSCCCCC----------GGGTTCTTCCEEECCSSCCCCCGG--G-----GGCTTCCEEECCSSCCCCC-
T ss_pred             -ccccccccccccccccc----------chhccccchhhhhchhhhhchhhh--h-----ccccccccccccccccccc-
Confidence             58899999999987651          234567899999999998876332  1     3468999999999998863 


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  405 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~  405 (453)
                               ..++   ++++|++|+|++|++++     ++ .+..+++|++|+|++|+|++      +++    +..+++
T Consensus       167 ---------~~l~---~l~~L~~L~Ls~n~l~~-----l~-~l~~l~~L~~L~Ls~N~lt~------i~~----l~~l~~  218 (227)
T d1h6ua2         167 ---------TPLA---NLSKLTTLKADDNKISD-----IS-PLASLPNLIEVHLKNNQISD------VSP----LANTSN  218 (227)
T ss_dssp             ---------GGGT---TCTTCCEEECCSSCCCC-----CG-GGGGCTTCCEEECTTSCCCB------CGG----GTTCTT
T ss_pred             ---------hhhc---ccccceecccCCCccCC-----Ch-hhcCCCCCCEEECcCCcCCC------Ccc----cccCCC
Confidence                     2244   67899999999999986     43 37889999999999999998      542    678899


Q ss_pred             ccEEEccC
Q 012930          406 LVELYLEN  413 (453)
Q Consensus       406 L~~L~L~~  413 (453)
                      |+.|++++
T Consensus       219 L~~L~lsn  226 (227)
T d1h6ua2         219 LFIVTLTN  226 (227)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEeeC
Confidence            99999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=7.4e-14  Score=121.91  Aligned_cols=126  Identities=19%  Similarity=0.280  Sum_probs=72.0

Q ss_pred             CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930          247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  326 (453)
Q Consensus       247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  326 (453)
                      +++|++|++++|++++         +. .++++++|++|++++|.+....+       +..++.|+.|++++|.+...  
T Consensus        61 l~nL~~L~Ls~N~l~~---------~~-~l~~l~~L~~L~l~~n~~~~~~~-------l~~l~~L~~L~l~~~~~~~~--  121 (199)
T d2omxa2          61 LNNLTQINFSNNQLTD---------IT-PLKNLTKLVDILMNNNQIADITP-------LANLTNLTGLTLFNNQITDI--  121 (199)
T ss_dssp             CTTCCEEECCSSCCCC---------CG-GGTTCTTCCEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCCCC--
T ss_pred             CCCcCcCccccccccC---------cc-cccCCcccccccccccccccccc-------cccccccccccccccccccc--
Confidence            3556666666666554         11 14566666666666666544111       13356666666666665531  


Q ss_pred             ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCc
Q 012930          327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL  406 (453)
Q Consensus       327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L  406 (453)
                              ..+.   .+++|+.|++++|++..     ++ .+..+++|+.|++++|++++      ++    .+..+++|
T Consensus       122 --------~~~~---~l~~L~~L~l~~n~l~~-----~~-~l~~~~~L~~L~l~~n~l~~------l~----~l~~l~~L  174 (199)
T d2omxa2         122 --------DPLK---NLTNLNRLELSSNTISD-----IS-ALSGLTSLQQLNFSSNQVTD------LK----PLANLTTL  174 (199)
T ss_dssp             --------GGGT---TCTTCSEEECCSSCCCC-----CG-GGTTCTTCSEEECCSSCCCC------CG----GGTTCTTC
T ss_pred             --------cccc---hhhhhHHhhhhhhhhcc-----cc-cccccccccccccccccccC------Cc----cccCCCCC
Confidence                    1222   45666667776666654     22 35566667777777766665      32    24555667


Q ss_pred             cEEEccCCCCCh
Q 012930          407 VELYLENCELSG  418 (453)
Q Consensus       407 ~~L~L~~n~l~~  418 (453)
                      ++|++++|+|++
T Consensus       175 ~~L~ls~N~i~~  186 (199)
T d2omxa2         175 ERLDISSNKVSD  186 (199)
T ss_dssp             CEEECCSSCCCC
T ss_pred             CEEECCCCCCCC
Confidence            777777776665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.47  E-value=6.4e-13  Score=112.26  Aligned_cols=134  Identities=16%  Similarity=0.158  Sum_probs=73.1

Q ss_pred             HHHHHHhhcCCCCccEEEcCC-CCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCccc
Q 012930          269 VVELVSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR  347 (453)
Q Consensus       269 ~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~  347 (453)
                      .+.+.....+.++|++|+|++ +.+++.+...++.++..+ ++|++|++++|                            
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n-~~L~~L~Ls~n----------------------------   56 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGT----------------------------   56 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTS----------------------------
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcC-CccCeeeccCC----------------------------
Confidence            334555556677777777776 457777777776665432 44555555554                            


Q ss_pred             EEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEc--cCCCCChhhHHHHH
Q 012930          348 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYL--ENCELSGRGVSQLL  425 (453)
Q Consensus       348 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L--~~n~l~~~~~~~l~  425 (453)
                             .++++++..+..++...++++.+++++|.++++|+..++.    ++..+++|+.++|  ++|.+++.|+.+++
T Consensus        57 -------~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~----~l~~~~~L~~l~L~l~~n~i~~~~~~~La  125 (166)
T d1io0a_          57 -------RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE----ALQSNTSLIELRIDNQSQPLGNNVEMEIA  125 (166)
T ss_dssp             -------CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH----GGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             -------cccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH----HHHhCccccEEeeccCCCcCcHHHHHHHH
Confidence                   4444555555555555555555555555555555554442    2344455554333  33445555555555


Q ss_pred             HHHhcCCCCCcEEECcCC
Q 012930          426 DTLSTLRRPPTSLSIADN  443 (453)
Q Consensus       426 ~~l~~~~~~L~~L~Ls~N  443 (453)
                      ..+.. +++|+.|+++.+
T Consensus       126 ~~L~~-n~~L~~L~l~~~  142 (166)
T d1io0a_         126 NMLEK-NTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHH-CSSCCEEECCCS
T ss_pred             HHHHh-CCCcCEEeCcCC
Confidence            55555 444555555444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=9.7e-14  Score=121.15  Aligned_cols=148  Identities=22%  Similarity=0.324  Sum_probs=88.4

Q ss_pred             CCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCch
Q 012930          187 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  266 (453)
Q Consensus       187 ~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~  266 (453)
                      +.++++|+++++.+... ..     +..+++|++|++++|++++..+  +..        +++|++|++++|.+..    
T Consensus        39 l~~l~~L~l~~~~i~~l-~~-----l~~l~nL~~L~Ls~N~l~~~~~--l~~--------l~~L~~L~l~~n~~~~----   98 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI-DG-----VEYLNNLTQINFSNNQLTDITP--LKN--------LTKLVDILMNNNQIAD----   98 (199)
T ss_dssp             HTTCCEEECTTSCCCCC-TT-----GGGCTTCCEEECCSSCCCCCGG--GTT--------CTTCCEEECCSSCCCC----
T ss_pred             hcCCCEEECCCCCCCCc-cc-----cccCCCcCcCccccccccCccc--ccC--------Cccccccccccccccc----
Confidence            35667777777664432 11     3456777777777777665322  221        4667777777776654    


Q ss_pred             hhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcc
Q 012930          267 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  346 (453)
Q Consensus       267 ~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L  346 (453)
                           ++ .+.++++|+.|++++|......+       +..+++|+.|++++|.+...          ..+.   .+++|
T Consensus        99 -----~~-~l~~l~~L~~L~l~~~~~~~~~~-------~~~l~~L~~L~l~~n~l~~~----------~~l~---~~~~L  152 (199)
T d2omxa2          99 -----IT-PLANLTNLTGLTLFNNQITDIDP-------LKNLTNLNRLELSSNTISDI----------SALS---GLTSL  152 (199)
T ss_dssp             -----CG-GGTTCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCCCC----------GGGT---TCTTC
T ss_pred             -----cc-ccccccccccccccccccccccc-------cchhhhhHHhhhhhhhhccc----------cccc---ccccc
Confidence                 11 25566777777777776554211       13356777777777766541          1223   45677


Q ss_pred             cEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930          347 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  386 (453)
Q Consensus       347 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  386 (453)
                      +.|++.+|++++     ++ .+..+++|+.|++++|+|++
T Consensus       153 ~~L~l~~n~l~~-----l~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         153 QQLNFSSNQVTD-----LK-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             SEEECCSSCCCC-----CG-GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccccC-----Cc-cccCCCCCCEEECCCCCCCC
Confidence            777777777765     22 35667777777777777766

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=1.3e-13  Score=121.31  Aligned_cols=165  Identities=22%  Similarity=0.198  Sum_probs=129.4

Q ss_pred             CCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCch
Q 012930          187 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  266 (453)
Q Consensus       187 ~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~  266 (453)
                      +.+|++|++++|.+.....      +..+++|++|++++|+|++..+  +..        +++|++|++++|++++    
T Consensus        45 L~~L~~L~l~~~~i~~l~~------l~~l~~L~~L~L~~n~i~~l~~--~~~--------l~~L~~L~l~~n~i~~----  104 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG------IQYLPNVTKLFLNGNKLTDIKP--LAN--------LKNLGWLFLDENKVKD----  104 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT------GGGCTTCCEEECCSSCCCCCGG--GTT--------CTTCCEEECCSSCCCC----
T ss_pred             hcCccEEECcCCCCCCchh------HhhCCCCCEEeCCCccccCccc--ccc--------Cccccccccccccccc----
Confidence            3578999999998654321      4678999999999999986432  221        6889999999999886    


Q ss_pred             hhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcc
Q 012930          267 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  346 (453)
Q Consensus       267 ~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L  346 (453)
                           ++ .+..+++|+.|++++|.+..- . .     +..++.++.+++++|.+++.          ..+.   .+++|
T Consensus       105 -----l~-~l~~l~~L~~L~l~~~~~~~~-~-~-----l~~l~~l~~l~~~~n~l~~~----------~~~~---~l~~L  158 (210)
T d1h6ta2         105 -----LS-SLKDLKKLKSLSLEHNGISDI-N-G-----LVHLPQLESLYLGNNKITDI----------TVLS---RLTKL  158 (210)
T ss_dssp             -----GG-GGTTCTTCCEEECTTSCCCCC-G-G-----GGGCTTCCEEECCSSCCCCC----------GGGG---GCTTC
T ss_pred             -----cc-ccccccccccccccccccccc-c-c-----cccccccccccccccccccc----------cccc---ccccc
Confidence                 33 477899999999999987652 1 1     23468999999999999863          2233   56899


Q ss_pred             cEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccC
Q 012930          347 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLEN  413 (453)
Q Consensus       347 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~  413 (453)
                      +++++++|++++     ++ .+..+++|++|++++|+|++      +|    .+..+++|++|+|++
T Consensus       159 ~~l~l~~n~l~~-----i~-~l~~l~~L~~L~Ls~N~i~~------l~----~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         159 DTLSLEDNQISD-----IV-PLAGLTKLQNLYLSKNHISD------LR----ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SEEECCSSCCCC-----CG-GGTTCTTCCEEECCSSCCCB------CG----GGTTCTTCSEEEEEE
T ss_pred             cccccccccccc-----cc-cccCCCCCCEEECCCCCCCC------Ch----hhcCCCCCCEEEccC
Confidence            999999999986     33 37889999999999999987      54    367789999999874

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.46  E-value=6.2e-13  Score=112.36  Aligned_cols=135  Identities=13%  Similarity=0.211  Sum_probs=111.5

Q ss_pred             HHHHHHhhCCCCCCEEEcCCC-CCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEE
Q 012930          299 MVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL  377 (453)
Q Consensus       299 ~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  377 (453)
                      ...+.+..+.++|++|+|+++ .+++.    +...+..++.   ..++|++|+|++|.+++.++..++..+..+++|++|
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~----~~~~l~~~L~---~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L   77 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKE----RIRSLIEAAC---NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVL   77 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHH----HHHHHHHHHT---TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEE
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHH----HHHHHHHHHh---hCCccceeeccccccchhHHHHHhhhhhhcccccce
Confidence            344556677799999999975 47642    2223444555   568899999999999999999999999999999999


Q ss_pred             eCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCC---CChhhHHHHHHHHhcCCCCCcEEECcCCCC
Q 012930          378 DISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE---LSGRGVSQLLDTLSTLRRPPTSLSIADNNL  445 (453)
Q Consensus       378 ~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~---l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  445 (453)
                      +|++|.|+++|+..++    .++..+++|++|++++|.   +++.++.++++.+.. +++|+.|+++.+..
T Consensus        78 ~L~~n~i~~~g~~~l~----~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~-n~sL~~l~l~~~~~  143 (167)
T d1pgva_          78 NVESNFLTPELLARLL----RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE-NESLLRVGISFASM  143 (167)
T ss_dssp             ECCSSBCCHHHHHHHH----HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH-CSSCCEEECCCCCH
T ss_pred             eeehhhcchHHHHHHH----HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHh-CCCccEeeCcCCCc
Confidence            9999999999999887    457888999999999874   667888999999999 78899999987754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=7.1e-13  Score=111.35  Aligned_cols=131  Identities=16%  Similarity=0.227  Sum_probs=84.8

Q ss_pred             cCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCC
Q 012930          277 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNL  356 (453)
Q Consensus       277 ~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l  356 (453)
                      .+...+++|+|++|+++. .+. +    ...+++|+.|+|++|.|+..             ..+..+++|++|++++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~-i~~-~----~~~l~~L~~L~Ls~N~i~~l-------------~~~~~l~~L~~L~ls~N~i   75 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV-IEN-L----GATLDQFDAIDFSDNEIRKL-------------DGFPLLRRLKTLLVNNNRI   75 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCC-G----GGGTTCCSEEECCSSCCCEE-------------CCCCCCSSCCEEECCSSCC
T ss_pred             cCcCcCcEEECCCCCCCc-cCc-c----ccccccCCEEECCCCCCCcc-------------CCcccCcchhhhhcccccc
Confidence            345677888888887765 221 1    23357888888888887741             2233677888888888888


Q ss_pred             ChhhHHHHHH-HHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCC
Q 012930          357 CKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPP  435 (453)
Q Consensus       357 ~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L  435 (453)
                      +.     ++. .+..+++|+.|++++|+|++      ++.+ ..+..+++|++|++++|+++..... -...+..+ ++|
T Consensus        76 ~~-----l~~~~~~~l~~L~~L~L~~N~i~~------~~~l-~~l~~l~~L~~L~l~~N~i~~~~~~-r~~~i~~l-p~L  141 (162)
T d1a9na_          76 CR-----IGEGLDQALPDLTELILTNNSLVE------LGDL-DPLASLKSLTYLCILRNPVTNKKHY-RLYVIYKV-PQV  141 (162)
T ss_dssp             CE-----ECSCHHHHCTTCCEEECCSCCCCC------GGGG-GGGGGCTTCCEEECCSSGGGGSTTH-HHHHHHHC-TTC
T ss_pred             cC-----CCccccccccccccceeccccccc------cccc-cccccccccchhhcCCCccccccch-HHHHHHHC-CCc
Confidence            76     332 34567888888888888876      3322 3356678888888888887653211 01234443 348


Q ss_pred             cEEEC
Q 012930          436 TSLSI  440 (453)
Q Consensus       436 ~~L~L  440 (453)
                      ++||-
T Consensus       142 ~~LD~  146 (162)
T d1a9na_         142 RVLDF  146 (162)
T ss_dssp             SEETT
T ss_pred             CeeCC
Confidence            88873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=1.9e-12  Score=103.48  Aligned_cols=85  Identities=26%  Similarity=0.346  Sum_probs=42.8

Q ss_pred             CCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChh
Q 012930          308 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD  387 (453)
Q Consensus       308 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  387 (453)
                      +.+|++|++++|.|++         +|..++   .+++|++|++++|.|++     ++ .+..+++|+.|++++|+|++ 
T Consensus        19 l~~L~~L~ls~N~l~~---------lp~~~~---~l~~L~~L~l~~N~i~~-----l~-~~~~l~~L~~L~l~~N~i~~-   79 (124)
T d1dcea3          19 LLLVTHLDLSHNRLRA---------LPPALA---ALRCLEVLQASDNALEN-----VD-GVANLPRLQELLLCNNRLQQ-   79 (124)
T ss_dssp             GTTCCEEECCSSCCCC---------CCGGGG---GCTTCCEEECCSSCCCC-----CG-GGTTCSSCCEEECCSSCCCS-
T ss_pred             CCCCCEEECCCCccCc---------chhhhh---hhhcccccccccccccc-----cC-ccccccccCeEECCCCccCC-
Confidence            4555555555555553         223333   34555555555555554     22 24555556666666655554 


Q ss_pred             HHHhHHHHHHhhcCCCCCccEEEccCCCCC
Q 012930          388 GIRSLIPYFVQASERCNPLVELYLENCELS  417 (453)
Q Consensus       388 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~  417 (453)
                           ++.+ ..+..+++|+.|++++|+++
T Consensus        80 -----~~~~-~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          80 -----SAAI-QPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             -----SSTT-GGGGGCTTCCEEECTTSGGG
T ss_pred             -----CCCc-hhhcCCCCCCEEECCCCcCC
Confidence                 2211 22344455666666665554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.27  E-value=2.6e-11  Score=102.06  Aligned_cols=80  Identities=11%  Similarity=0.125  Sum_probs=49.3

Q ss_pred             HHHHHHHHHhcCCCccEEEcCC-CCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCc
Q 012930          204 VQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL  282 (453)
Q Consensus       204 ~~~~~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L  282 (453)
                      +..++..+..+.++|++|+|++ +.+++.+...+++++.                                    .+++|
T Consensus         5 i~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~------------------------------------~n~~L   48 (166)
T d1io0a_           5 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK------------------------------------TNTYV   48 (166)
T ss_dssp             HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT------------------------------------TCCSC
T ss_pred             HHHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHh------------------------------------cCCcc
Confidence            4445555666777888888876 4677777666665543                                    44667


Q ss_pred             cEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCC
Q 012930          283 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS  320 (453)
Q Consensus       283 ~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~  320 (453)
                      ++|++++|.+++.+...+++++..+ +.++.+++++|.
T Consensus        49 ~~L~Ls~n~l~~~~~~~L~~~l~~~-~~l~~l~l~~~~   85 (166)
T d1io0a_          49 KKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNF   85 (166)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSC
T ss_pred             CeeeccCCcccHHHHHHHHHHHhhc-ccchhhhhcccc
Confidence            7777777777777777776665432 344444433333

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=7.6e-13  Score=114.64  Aligned_cols=132  Identities=17%  Similarity=0.138  Sum_probs=101.9

Q ss_pred             ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccccc
Q 012930          249 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  328 (453)
Q Consensus       249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~  328 (453)
                      ..+.++.++++++.         +|..+  -+++++|+|++|+++.......    +..+++|++|+|++|.+....+  
T Consensus         9 ~~~~v~Cs~~~L~~---------iP~~l--p~~l~~L~Ls~N~i~~~~~~~~----f~~l~~L~~L~L~~N~i~~~~~--   71 (192)
T d1w8aa_           9 EGTTVDCTGRGLKE---------IPRDI--PLHTTELLLNDNELGRISSDGL----FGRLPHLVKLELKRNQLTGIEP--   71 (192)
T ss_dssp             ETTEEECTTSCCSS---------CCSCC--CTTCSEEECCSCCCCSBCCSCS----GGGCTTCCEEECCSSCCCCBCT--
T ss_pred             cCCEEEEeCCCcCc---------cCCCC--CCCCCEEEeCCCCCcccccccc----cCCCceEeeeeccccccccccc--
Confidence            56788999988876         33222  1589999999999975333222    3457899999999999987443  


Q ss_pred             CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccE
Q 012930          329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE  408 (453)
Q Consensus       329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~  408 (453)
                            ..   +..+++|++|+|++|+|+.    ..+.+|..+++|++|+|++|+|+.      +|.  +++..+++|++
T Consensus        72 ------~~---~~~~~~L~~L~Ls~N~l~~----l~~~~F~~l~~L~~L~L~~N~l~~------i~~--~~f~~l~~L~~  130 (192)
T d1w8aa_          72 ------NA---FEGASHIQELQLGENKIKE----ISNKMFLGLHQLKTLNLYDNQISC------VMP--GSFEHLNSLTS  130 (192)
T ss_dssp             ------TT---TTTCTTCCEEECCSCCCCE----ECSSSSTTCTTCCEEECCSSCCCE------ECT--TSSTTCTTCCE
T ss_pred             ------cc---cccccccceeeeccccccc----cCHHHHhCCCcccccccCCccccc------cCH--HHhcCCccccc
Confidence                  33   3367899999999999997    234578899999999999999987      543  66888899999


Q ss_pred             EEccCCCCCh
Q 012930          409 LYLENCELSG  418 (453)
Q Consensus       409 L~L~~n~l~~  418 (453)
                      |+|++|.+..
T Consensus       131 l~L~~N~~~~  140 (192)
T d1w8aa_         131 LNLASNPFNC  140 (192)
T ss_dssp             EECTTCCBCC
T ss_pred             cccccccccc
Confidence            9999998764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=9.9e-13  Score=113.90  Aligned_cols=173  Identities=14%  Similarity=0.111  Sum_probs=119.7

Q ss_pred             ccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHH
Q 012930          218 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG  297 (453)
Q Consensus       218 L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  297 (453)
                      .+.++.++++++ ..|..+          ...+++|+|++|.|+..       .-...+.++++|++|+|++|.+....+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l----------p~~l~~L~Ls~N~i~~~-------~~~~~f~~l~~L~~L~L~~N~i~~~~~   71 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI----------PLHTTELLLNDNELGRI-------SSDGLFGRLPHLVKLELKRNQLTGIEP   71 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC----------CTTCSEEECCSCCCCSB-------CCSCSGGGCTTCCEEECCSSCCCCBCT
T ss_pred             CCEEEEeCCCcC-ccCCCC----------CCCCCEEEeCCCCCccc-------ccccccCCCceEeeeeccccccccccc
Confidence            467888888887 233222          36799999999999751       113456788999999999999877444


Q ss_pred             HHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEE
Q 012930          298 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL  377 (453)
Q Consensus       298 ~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  377 (453)
                      ..+     ..+++|++|+|++|+|+...+           ..|.++++|++|+|++|+|+.    ..+.++..+++|++|
T Consensus        72 ~~~-----~~~~~L~~L~Ls~N~l~~l~~-----------~~F~~l~~L~~L~L~~N~l~~----i~~~~f~~l~~L~~l  131 (192)
T d1w8aa_          72 NAF-----EGASHIQELQLGENKIKEISN-----------KMFLGLHQLKTLNLYDNQISC----VMPGSFEHLNSLTSL  131 (192)
T ss_dssp             TTT-----TTCTTCCEEECCSCCCCEECS-----------SSSTTCTTCCEEECCSSCCCE----ECTTSSTTCTTCCEE
T ss_pred             ccc-----ccccccceeeeccccccccCH-----------HHHhCCCcccccccCCccccc----cCHHHhcCCcccccc
Confidence            332     457899999999999986433           234478999999999999997    234568899999999


Q ss_pred             eCCCCCCChh-HHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930          378 DISDNTIEDD-GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  446 (453)
Q Consensus       378 ~Ls~N~i~~~-g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  446 (453)
                      +|++|.+.-. ....+.          ..++.+.+..+.++..    .+..+.    .++.++|+.|+++
T Consensus       132 ~L~~N~~~~~~~~~~~~----------~~l~~~~l~~~~~~c~----~p~~l~----~~~l~~L~~n~l~  183 (192)
T d1w8aa_         132 NLASNPFNCNCHLAWFA----------EWLRKKSLNGGAARCG----APSKVR----DVQIKDLPHSEFK  183 (192)
T ss_dssp             ECTTCCBCCSGGGHHHH----------HHHHHHCCSGGGCBBC----SSTTTT----TSBGGGSCTTTCC
T ss_pred             cccccccccccchHHHh----------hhhhhhcccCCCeEeC----CChhhc----CCEeeecCHhhCc
Confidence            9999998632 222221          1244445566665542    222222    2666788888774

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=1.2e-12  Score=104.76  Aligned_cols=104  Identities=27%  Similarity=0.319  Sum_probs=84.8

Q ss_pred             CEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHh
Q 012930          312 SILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRS  391 (453)
Q Consensus       312 ~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~  391 (453)
                      |.|+|++|+++.         ++ .++   ++..|++|++++|.|++     +|..+..+++|+.|++++|.|++     
T Consensus         1 R~L~Ls~n~l~~---------l~-~l~---~l~~L~~L~ls~N~l~~-----lp~~~~~l~~L~~L~l~~N~i~~-----   57 (124)
T d1dcea3           1 RVLHLAHKDLTV---------LC-HLE---QLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALEN-----   57 (124)
T ss_dssp             SEEECTTSCCSS---------CC-CGG---GGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCC-----
T ss_pred             CEEEcCCCCCCC---------Cc-ccc---cCCCCCEEECCCCccCc-----chhhhhhhhcccccccccccccc-----
Confidence            579999999985         21 244   67899999999999996     77788999999999999999997     


Q ss_pred             HHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          392 LIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       392 l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                       +|    .+..+++|++|++++|+|++...   ...+.. .++|+.|++++|+|++
T Consensus        58 -l~----~~~~l~~L~~L~l~~N~i~~~~~---~~~l~~-~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          58 -VD----GVANLPRLQELLLCNNRLQQSAA---IQPLVS-CPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             -CG----GGTTCSSCCEEECCSSCCCSSST---TGGGGG-CTTCCEEECTTSGGGG
T ss_pred             -cC----ccccccccCeEECCCCccCCCCC---chhhcC-CCCCCEEECCCCcCCc
Confidence             54    36778999999999999987421   234556 3559999999999875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.6e-12  Score=107.76  Aligned_cols=43  Identities=26%  Similarity=0.195  Sum_probs=19.9

Q ss_pred             hcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930          276 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  323 (453)
Q Consensus       276 l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  323 (453)
                      +..+++|++|++++|.+..- +..+.    ..+++|++|++++|.+++
T Consensus        59 ~~~l~~L~~L~ls~N~i~~l-~~~~~----~~l~~L~~L~L~~N~i~~  101 (162)
T d1a9na_          59 FPLLRRLKTLLVNNNRICRI-GEGLD----QALPDLTELILTNNSLVE  101 (162)
T ss_dssp             CCCCSSCCEEECCSSCCCEE-CSCHH----HHCTTCCEEECCSCCCCC
T ss_pred             cccCcchhhhhcccccccCC-Ccccc----ccccccccceeccccccc
Confidence            34455555555555555441 11111    113555555555555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.5e-13  Score=122.12  Aligned_cols=201  Identities=11%  Similarity=0.077  Sum_probs=124.4

Q ss_pred             ceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhH-HHHHHHHhhccccC
Q 012930          168 RCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF-VEGICRSLCSKRKR  246 (453)
Q Consensus       168 ~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~-~~~l~~~L~~~~~~  246 (453)
                      +.++.++...+.+|..+.  +++++|++++|.+......    .+.++++|++|++++|.+.... ..++..        
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~----~f~~l~~L~~L~ls~n~~~~~i~~~~f~~--------   76 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSN--------   76 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTT----TTTTCTTCCEEEEESCTTCCEECSSSEES--------
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChh----Hhhccchhhhhhhccccccceeecccccc--------
Confidence            334444444444444332  5788999999886543222    2567889999999998765421 112211        


Q ss_pred             CcceeEEEccC-CCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          247 IHKIENLSIDI-SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       247 ~~~L~~L~L~~-n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                      +..++++.+.. |.+..        ..+..+.++++|+++++++|.+........    ......+..+..+++.+....
T Consensus        77 l~~l~~l~~~~~n~l~~--------~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~----~~~l~~l~~~~~~n~~l~~i~  144 (242)
T d1xwdc1          77 LPKLHEIRIEKANNLLY--------INPEAFQNLPNLQYLLISNTGIKHLPDVHK----IHSLQKVLLDIQDNINIHTIE  144 (242)
T ss_dssp             CTTCCEEEEECCTTCCE--------ECTTSEECCTTCCEEEEESCCCCSCCCCTT----TCBSSCEEEEEESCTTCCEEC
T ss_pred             ccccccccccccccccc--------cccccccccccccccccchhhhcccccccc----ccccccccccccccccccccc
Confidence            46777887654 45554        334556788999999999998765222111    122355556666666666421


Q ss_pred             cccCcCchHHhhcCCCCC-CcccEEEecCCCCChhhHHHHHHHHhCCCCccEE-eCCCCCCChhHHHhHHHHHHhhcCCC
Q 012930          326 SKYDRSGPLFSLGAGKSL-QSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL-DISDNTIEDDGIRSLIPYFVQASERC  403 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L-~Ls~N~i~~~g~~~l~~~l~~~l~~~  403 (453)
                      .           ..+..+ ..++.|++.+|+++.     ++..+...+++..+ ++++|.|+.      +|.  ..+..+
T Consensus       145 ~-----------~~~~~~~~~l~~L~l~~n~l~~-----i~~~~~~~~~l~~~~~l~~n~l~~------l~~--~~f~~l  200 (242)
T d1xwdc1         145 R-----------NSFVGLSFESVILWLNKNGIQE-----IHNCAFNGTQLDELNLSDNNNLEE------LPN--DVFHGA  200 (242)
T ss_dssp             T-----------TSSTTSBSSCEEEECCSSCCCE-----ECTTTTTTCCEEEEECTTCTTCCC------CCT--TTTTTS
T ss_pred             c-----------cccccccccceeeecccccccc-----cccccccchhhhcccccccccccc------ccH--HHhcCC
Confidence            1           111122 468889999998886     44444455666555 467788876      542  447778


Q ss_pred             CCccEEEccCCCCCh
Q 012930          404 NPLVELYLENCELSG  418 (453)
Q Consensus       404 ~~L~~L~L~~n~l~~  418 (453)
                      ++|++|++++|+|+.
T Consensus       201 ~~L~~L~Ls~N~l~~  215 (242)
T d1xwdc1         201 SGPVILDISRTRIHS  215 (242)
T ss_dssp             CCCSEEECTTSCCCC
T ss_pred             CCCCEEECCCCcCCc
Confidence            899999999998886

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.09  E-value=3.7e-11  Score=113.32  Aligned_cols=56  Identities=25%  Similarity=0.318  Sum_probs=44.3

Q ss_pred             CCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930          371 IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       371 ~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      +++|++|++++|+|+.      +|   .   ..++|++|+|++|+|+.     +++    ..++|++|++++|+|+.
T Consensus       283 ~~~L~~L~Ls~N~l~~------lp---~---~~~~L~~L~L~~N~L~~-----l~~----~~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE------LP---A---LPPRLERLIASFNHLAE-----VPE----LPQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CTTCCEEECCSSCCSC------CC---C---CCTTCCEEECCSSCCSC-----CCC----CCTTCCEEECCSSCCSS
T ss_pred             CCCCCEEECCCCccCc------cc---c---ccCCCCEEECCCCcCCc-----ccc----ccCCCCEEECcCCcCCC
Confidence            4689999999999986      55   2   24789999999999987     332    24569999999999875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.05  E-value=6.7e-12  Score=108.98  Aligned_cols=115  Identities=21%  Similarity=0.222  Sum_probs=76.7

Q ss_pred             HHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEe
Q 012930          272 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL  351 (453)
Q Consensus       272 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L  351 (453)
                      +...+..+++|++|+|++|.+.. .. .+     ..+++|++|++++|.|++.         +....   .+++|++|++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l-----~~l~~L~~L~Ls~N~i~~i---------~~~~~---~~~~L~~L~l  100 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SL-----SGMENLRILSLGRNLIKKI---------ENLDA---VADTLEELWI  100 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CH-----HHHTTCCEEECCEEEECSC---------SSHHH---HHHHCCEEEC
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cc-----cCCccccChhhcccccccc---------ccccc---cccccccccc
Confidence            44556677888888888887765 21 22     1247888888888887652         11122   1246888888


Q ss_pred             cCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          352 RGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       352 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      ++|++++     ++ .+..+++|+.|++++|+|++      ++.+ ..+..+++|++|++++|+++.
T Consensus       101 ~~N~i~~-----l~-~~~~l~~L~~L~L~~N~i~~------~~~~-~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         101 SYNQIAS-----LS-GIEKLVNLRVLYMSNNKITN------WGEI-DKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEECCC-----HH-HHHHHHHSSEEEESEEECCC------HHHH-HHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccc-----cc-cccccccccccccccchhcc------cccc-ccccCCCccceeecCCCcccc
Confidence            8888875     32 35667788888888888876      3322 346677888888888887544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=7.8e-11  Score=105.39  Aligned_cols=201  Identities=18%  Similarity=0.160  Sum_probs=133.4

Q ss_pred             cEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHH
Q 012930          191 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV  270 (453)
Q Consensus       191 ~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~  270 (453)
                      +.++.++..++.....+       .+++++|+|++|.|+.....++..        +++|++|++++|.+..        
T Consensus        11 ~~i~c~~~~l~~iP~~l-------~~~l~~L~Ls~n~i~~l~~~~f~~--------l~~L~~L~ls~n~~~~--------   67 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL-------PRNAIELRFVLTKLRVIQKGAFSG--------FGDLEKIEISQNDVLE--------   67 (242)
T ss_dssp             SEEEEESCSCSSCCSCS-------CSCCSEEEEESCCCCEECTTTTTT--------CTTCCEEEEESCTTCC--------
T ss_pred             CEEEEeCCCCCCcCCCC-------CCCCCEEECcCCcCCccChhHhhc--------cchhhhhhhccccccc--------
Confidence            45666665544322111       148999999999998655444443        5899999999998876        


Q ss_pred             HH-HHhhcCCCCccEEEcCC-CCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccE
Q 012930          271 EL-VSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL  348 (453)
Q Consensus       271 ~l-~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~  348 (453)
                      .+ +..+.+++.++++.+.. |.+....+..     +..+++|+++++++|.+....+          ...+..+..+..
T Consensus        68 ~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~-----~~~l~~L~~l~l~~~~l~~~~~----------~~~~~~l~~l~~  132 (242)
T d1xwdc1          68 VIEADVFSNLPKLHEIRIEKANNLLYINPEA-----FQNLPNLQYLLISNTGIKHLPD----------VHKIHSLQKVLL  132 (242)
T ss_dssp             EECSSSEESCTTCCEEEEECCTTCCEECTTS-----EECCTTCCEEEEESCCCCSCCC----------CTTTCBSSCEEE
T ss_pred             eeecccccccccccccccccccccccccccc-----ccccccccccccchhhhccccc----------cccccccccccc
Confidence            22 23466789999998764 5666544332     2557899999999999875221          222235567777


Q ss_pred             EEecCCCCChhhHHHHHHHHhCC-CCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEE-EccCCCCChhhHHHHHH
Q 012930          349 LNLRGNNLCKADARDLGSALVHI-PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL-YLENCELSGRGVSQLLD  426 (453)
Q Consensus       349 L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L-~L~~n~l~~~~~~~l~~  426 (453)
                      +...++.++.-    -+..+..+ ..++.|++++|+++.      ++   .......++.++ .+++|+|+...    ..
T Consensus       133 ~~~~n~~l~~i----~~~~~~~~~~~l~~L~l~~n~l~~------i~---~~~~~~~~l~~~~~l~~n~l~~l~----~~  195 (242)
T d1xwdc1         133 DIQDNINIHTI----ERNSFVGLSFESVILWLNKNGIQE------IH---NCAFNGTQLDELNLSDNNNLEELP----ND  195 (242)
T ss_dssp             EEESCTTCCEE----CTTSSTTSBSSCEEEECCSSCCCE------EC---TTTTTTCCEEEEECTTCTTCCCCC----TT
T ss_pred             ccccccccccc----cccccccccccceeeecccccccc------cc---cccccchhhhcccccccccccccc----HH
Confidence            77788788762    12234444 478899999999987      43   223334566655 56888888731    22


Q ss_pred             HHhcCCCCCcEEECcCCCCCc
Q 012930          427 TLSTLRRPPTSLSIADNNLGR  447 (453)
Q Consensus       427 ~l~~~~~~L~~L~Ls~N~l~~  447 (453)
                      .+.. .++|++|+|++|.|+.
T Consensus       196 ~f~~-l~~L~~L~Ls~N~l~~  215 (242)
T d1xwdc1         196 VFHG-ASGPVILDISRTRIHS  215 (242)
T ss_dssp             TTTT-SCCCSEEECTTSCCCC
T ss_pred             HhcC-CCCCCEEECCCCcCCc
Confidence            3455 3569999999999985

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.85  E-value=2.1e-11  Score=105.75  Aligned_cols=131  Identities=26%  Similarity=0.270  Sum_probs=93.9

Q ss_pred             CCccEEEcCCC--CCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCC
Q 012930          280 RSLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC  357 (453)
Q Consensus       280 ~~L~~L~L~~n--~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~  357 (453)
                      ..++.+++++.  .+.. .+..+.     .+++|++|+|++|.|+..          ..+.   .+++|++|+|++|.|+
T Consensus        23 ~~~~~~~l~~~~~~i~~-l~~sl~-----~L~~L~~L~Ls~n~I~~i----------~~l~---~l~~L~~L~Ls~N~i~   83 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEK-MDATLS-----TLKACKHLALSTNNIEKI----------SSLS---GMENLRILSLGRNLIK   83 (198)
T ss_dssp             TTCSCEECCBCCTTCCC-CHHHHH-----HTTTCCEEECSEEEESCC----------CCHH---HHTTCCEEECCEEEEC
T ss_pred             cccceeeeecccCchhh-hhhHHh-----cccccceeECcccCCCCc----------cccc---CCccccChhhcccccc
Confidence            34666777654  2332 334442     369999999999999852          1244   5689999999999988


Q ss_pred             hhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcE
Q 012930          358 KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTS  437 (453)
Q Consensus       358 ~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~  437 (453)
                      +     ++.....+++|+.|++++|.|++      +++    +..+++|+.|++++|+|+....   ...+..+ ++|+.
T Consensus        84 ~-----i~~~~~~~~~L~~L~l~~N~i~~------l~~----~~~l~~L~~L~L~~N~i~~~~~---~~~l~~l-~~L~~  144 (198)
T d1m9la_          84 K-----IENLDAVADTLEELWISYNQIAS------LSG----IEKLVNLRVLYMSNNKITNWGE---IDKLAAL-DKLED  144 (198)
T ss_dssp             S-----CSSHHHHHHHCCEEECSEEECCC------HHH----HHHHHHSSEEEESEEECCCHHH---HHHHTTT-TTCSE
T ss_pred             c-----ccccccccccccccccccccccc------ccc----ccccccccccccccchhccccc---cccccCC-Cccce
Confidence            6     33333445679999999999997      443    2334789999999999988421   2456664 55999


Q ss_pred             EECcCCCCCcc
Q 012930          438 LSIADNNLGRF  448 (453)
Q Consensus       438 L~Ls~N~l~~~  448 (453)
                      |++++|++...
T Consensus       145 L~L~~N~l~~~  155 (198)
T d1m9la_         145 LLLAGNPLYND  155 (198)
T ss_dssp             EEECSSHHHHH
T ss_pred             eecCCCccccC
Confidence            99999987654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2e-09  Score=89.21  Aligned_cols=111  Identities=18%  Similarity=0.139  Sum_probs=83.3

Q ss_pred             CCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCC-CCCcccccCcCchHHhhcCCCCCCcccEEEecCCCC
Q 012930          278 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNL  356 (453)
Q Consensus       278 ~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l  356 (453)
                      .+.....++.+++.+.. .+..+     ...++|++|++++|+ ++...+           ..+.++++|+.|+|++|+|
T Consensus         6 ~c~~~~~l~c~~~~~~~-~p~~l-----~~l~~l~~L~l~~n~~l~~i~~-----------~~f~~l~~L~~L~Ls~N~l   68 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALD-SLHHL-----PGAENLTELYIENQQHLQHLEL-----------RDLRGLGELRNLTIVKSGL   68 (156)
T ss_dssp             CCSSSSCEECCSSCCCT-TTTTS-----CSCSCCSEEECCSCSSCCEECG-----------GGSCSCCCCSEEECCSSCC
T ss_pred             CcCCCCeEEecCCCCcc-Ccccc-----cCccccCeeecCCCccccccCc-----------hhhccccccCcceeecccc
Confidence            34567789999988876 45444     446899999998764 775322           2344789999999999999


Q ss_pred             ChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          357 CKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       357 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      +.    .-+.++..+++|+.|+|++|+|+.      +|.  ..+. ..+|++|+|++|.+..
T Consensus        69 ~~----i~~~~f~~l~~L~~L~Ls~N~l~~------l~~--~~~~-~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          69 RF----VAPDAFHFTPRLSRLNLSFNALES------LSW--KTVQ-GLSLQELVLSGNPLHC  117 (156)
T ss_dssp             CE----ECTTGGGSCSCCCEEECCSSCCSC------CCS--TTTC-SCCCCEEECCSSCCCC
T ss_pred             CC----cccccccccccccceeccCCCCcc------cCh--hhhc-cccccccccCCCcccC
Confidence            97    225678899999999999999986      552  3343 3479999999999863

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=7.9e-09  Score=85.44  Aligned_cols=109  Identities=21%  Similarity=0.134  Sum_probs=82.1

Q ss_pred             CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCC-CCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930          247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  325 (453)
Q Consensus       247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  325 (453)
                      +...+.++.+++.++.         .+..+..+++|++|++.+| .++.-.+..     +..+++|+.|++++|+|+...
T Consensus         7 c~~~~~l~c~~~~~~~---------~p~~l~~l~~l~~L~l~~n~~l~~i~~~~-----f~~l~~L~~L~Ls~N~l~~i~   72 (156)
T d2ifga3           7 PHGSSGLRCTRDGALD---------SLHHLPGAENLTELYIENQQHLQHLELRD-----LRGLGELRNLTIVKSGLRFVA   72 (156)
T ss_dssp             CSSSSCEECCSSCCCT---------TTTTSCSCSCCSEEECCSCSSCCEECGGG-----SCSCCCCSEEECCSSCCCEEC
T ss_pred             cCCCCeEEecCCCCcc---------CcccccCccccCeeecCCCccccccCchh-----hccccccCcceeeccccCCcc
Confidence            3456678888887776         4556778899999999766 476533322     355789999999999998643


Q ss_pred             cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCC
Q 012930          326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE  385 (453)
Q Consensus       326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  385 (453)
                      +        .++.   .+++|++|+|++|+|+.     ++..+....+|+.|+|++|++.
T Consensus        73 ~--------~~f~---~l~~L~~L~Ls~N~l~~-----l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          73 P--------DAFH---FTPRLSRLNLSFNALES-----LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             T--------TGGG---SCSCCCEEECCSSCCSC-----CCSTTTCSCCCCEEECCSSCCC
T ss_pred             c--------cccc---ccccccceeccCCCCcc-----cChhhhccccccccccCCCccc
Confidence            3        4455   67899999999999985     6665555668999999999985

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.3e-07  Score=76.89  Aligned_cols=67  Identities=27%  Similarity=0.272  Sum_probs=36.8

Q ss_pred             hCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCC
Q 012930          306 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE  385 (453)
Q Consensus       306 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  385 (453)
                      ..+++|++|+|++|+|++..+      ++..+.   .+++|+.|+|++|.|++-.  .+  .......|+.|++++|+++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~------~~~~~~---~l~~L~~L~Ls~N~i~~l~--~l--~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDD------MSSIVQ---KAPNLKILNLSGNELKSER--EL--DKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSG------GGTHHH---HSTTCCCCCCTTSCCCCGG--GH--HHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCch------hHHHHh---hCCcccccccccCccccch--hh--hhhhccccceeecCCCCcC
Confidence            446778888888887775322      223333   4456666666666666521  01  1112335666666666664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.34  E-value=2.3e-07  Score=86.52  Aligned_cols=138  Identities=23%  Similarity=0.263  Sum_probs=93.5

Q ss_pred             CccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhH
Q 012930          217 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF  296 (453)
Q Consensus       217 ~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~  296 (453)
                      ++++|+|+++.++.         +...   .++|++|++++|+++.         ++.   ...+|+.|++++|.++. .
T Consensus        39 ~l~~LdLs~~~L~~---------lp~~---~~~L~~L~Ls~N~l~~---------lp~---~~~~L~~L~l~~n~l~~-l   93 (353)
T d1jl5a_          39 QAHELELNNLGLSS---------LPEL---PPHLESLVASCNSLTE---------LPE---LPQSLKSLLVDNNNLKA-L   93 (353)
T ss_dssp             TCSEEECTTSCCSC---------CCSC---CTTCSEEECCSSCCSS---------CCC---CCTTCCEEECCSSCCSC-C
T ss_pred             CCCEEEeCCCCCCC---------CCCC---CCCCCEEECCCCCCcc---------ccc---chhhhhhhhhhhcccch-h
Confidence            68888999888761         2222   4678889998888876         222   23578888888887764 1


Q ss_pred             HHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccE
Q 012930          297 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEI  376 (453)
Q Consensus       297 ~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  376 (453)
                      .        .-.+.|++|++++|.+..         +|.    ...+++|++|++++|.+...     +   .....+..
T Consensus        94 ~--------~lp~~L~~L~L~~n~l~~---------lp~----~~~l~~L~~L~l~~~~~~~~-----~---~~~~~l~~  144 (353)
T d1jl5a_          94 S--------DLPPLLEYLGVSNNQLEK---------LPE----LQNSSFLKIIDVDNNSLKKL-----P---DLPPSLEF  144 (353)
T ss_dssp             C--------SCCTTCCEEECCSSCCSS---------CCC----CTTCTTCCEEECCSSCCSCC-----C---CCCTTCCE
T ss_pred             h--------hhcccccccccccccccc---------ccc----hhhhccceeecccccccccc-----c---cccccccc
Confidence            1        113568889998888874         221    22567888888888887652     1   23456778


Q ss_pred             EeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930          377 LDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  418 (453)
Q Consensus       377 L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  418 (453)
                      +.+..+...+      .    ..+..++.++.+++++|.+..
T Consensus       145 l~~~~~~~~~------~----~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         145 IAAGNNQLEE------L----PELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             EECCSSCCSS------C----CCCTTCTTCCEEECCSSCCSS
T ss_pred             hhhccccccc------c----ccccccccceecccccccccc
Confidence            8877766654      2    235666888889998887655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=7.1e-08  Score=80.07  Aligned_cols=92  Identities=26%  Similarity=0.335  Sum_probs=61.3

Q ss_pred             CCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhh-
Q 012930          342 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG-  420 (453)
Q Consensus       342 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~-  420 (453)
                      .++.|++|+|++|+|++-.  .++..+..+++|+.|+|++|.|++      ++.+ ..++. ..|+.|++++|+++... 
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~--~~~~~~~~l~~L~~L~Ls~N~i~~------l~~l-~~l~~-~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKS------EREL-DKIKG-LKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCS--GGGTHHHHSTTCCCCCCTTSCCCC------GGGH-HHHTT-CCCSSCCCTTSTTSSSSS
T ss_pred             hCCCCCEeeCCCccccCCc--hhHHHHhhCCcccccccccCcccc------chhh-hhhhc-cccceeecCCCCcCcCcc
Confidence            5688999999999988621  244566788999999999999987      3322 22333 47899999999886421 


Q ss_pred             --HHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930          421 --VSQLLDTLSTLRRPPTSLSIADNNLG  446 (453)
Q Consensus       421 --~~~l~~~l~~~~~~L~~L~Ls~N~l~  446 (453)
                        .......+..+ ++|+.||  +..+.
T Consensus       133 ~~~~y~~~i~~~~-P~L~~LD--g~~v~  157 (162)
T d1koha1         133 DQSTYISAIRERF-PKLLRLD--GHELP  157 (162)
T ss_dssp             SHHHHHHHHHTTS-TTCCEET--TEECC
T ss_pred             cchhHHHHHHHHC-CCCCEEC--cCCCc
Confidence              12223344443 4588887  55553

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0032  Score=46.50  Aligned_cols=71  Identities=20%  Similarity=0.272  Sum_probs=43.2

Q ss_pred             hhhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCCCCCccccccccccccCCchHHHHHHHhcccCCCCC------
Q 012930           18 PYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTD------   91 (453)
Q Consensus        18 ~~~~~lp~~~~~~i~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~w~~~~~~~w~~~~~------   91 (453)
                      .++..||.|++..||++||+..|-.+.                  ..++.=-.-...+..|++.+...|.....      
T Consensus        17 D~i~~LP~Eil~~Ils~Ld~~dL~~~~------------------~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~   78 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFLEPKDLLQAA------------------QTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRK   78 (102)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHT------------------TSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--
T ss_pred             CChhhCCHHHHHHHHHcCCHHHHHHHH------------------HHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhh
Confidence            567789999999999999998884433                  01110001123346799888766543211      


Q ss_pred             ----CCCCchhHHHHHHHH
Q 012930           92 ----QIEPVDWQQRYWEAH  106 (453)
Q Consensus        92 ----~~~~~~~~~~~~e~~  106 (453)
                          .....+|++.|.++|
T Consensus        79 ~~~~~~~~~~WK~~Y~~~~   97 (102)
T d2ovrb1          79 VIKPGFIHSPWKSAYIRQH   97 (102)
T ss_dssp             CCSSCCCCCHHHHHHHHHH
T ss_pred             cccCCCCCcCHHHHHHHHH
Confidence                112456999886544

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.002  Score=38.71  Aligned_cols=20  Identities=30%  Similarity=0.451  Sum_probs=17.7

Q ss_pred             ccCchHHHHHHHhcCChhhh
Q 012930           21 YELPADLFDILLTCLPPLAL   40 (453)
Q Consensus        21 ~~lp~~~~~~i~~~l~~~~l   40 (453)
                      .+||.|++..||++||+.-+
T Consensus         2 ~~LP~eil~~If~~L~~~dl   21 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPEL   21 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGH
T ss_pred             CcCCHHHHHHHHHcCCHHHH
Confidence            57999999999999997665

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.76  E-value=0.027  Score=41.05  Aligned_cols=23  Identities=13%  Similarity=0.163  Sum_probs=20.3

Q ss_pred             hhhccCchHHHHHHHhcCChhhh
Q 012930           18 PYVYELPADLFDILLTCLPPLAL   40 (453)
Q Consensus        18 ~~~~~lp~~~~~~i~~~l~~~~l   40 (453)
                      -++..||+|++..||++||+.-|
T Consensus         4 D~~~~LP~Ell~~I~s~Ld~~dL   26 (100)
T d1nexb1           4 DLITSLPFEISLKIFNYLQFEDI   26 (100)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHH
T ss_pred             CchhhCCHHHHHHHHHCCCHHHH
Confidence            36788999999999999998776

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.66  E-value=0.16  Score=37.79  Aligned_cols=22  Identities=23%  Similarity=0.498  Sum_probs=17.8

Q ss_pred             hhccCc----hHHHHHHHhcCChhhh
Q 012930           19 YVYELP----ADLFDILLTCLPPLAL   40 (453)
Q Consensus        19 ~~~~lp----~~~~~~i~~~l~~~~l   40 (453)
                      ++..||    +|+...||++||+..|
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~Ld~~dL   35 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYLDAKSL   35 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHH
T ss_pred             HHHHCCCCChHHHHHHHHHcCCHHHH
Confidence            444555    6999999999998887