Citrus Sinensis ID: 012933

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
Protein Sequence
MIFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNEDLLSRSLRHTNAK
Secondary Structure (PSIPRED)
cEEccccEEcccccccccccccccccccccEEEEEccccccEEcccccccccccccccccccEEEccccccccEEcccccccccccccEEEEEcccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccEEEEEcccccccccccccccccccccEEEEEEcccccEEEccccccccccccccccccccEEEEcccccccEEccccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHccccccccccccccccccEEEEcccccccEEcccccccccccccccEEEEccccccccccccccccccccEEEEEcccccccccccccccccccccEEEcccccccHHHHccccccccccccccccccccccccccccccccccEEEcc
Secondary Structure Prediction (SSPRO)
cccHccEEEEEcccccccccccHHHHHHHcEEEEcccHHHHHHHHccccccccccEEccccEEEEEcccHHHHHccccccccccccccEEEEccccccHHccccccccccccEEEEEcccccccccccccccccccccccccEEccccccEEEEcccccHHHHccccccccHHccccEEEEEcccccHHHcccHHHHHHHHHccEEEEcccccHHHHEccHccccccccccccccccccccEEEcccccccccccccccccccccEEEEEccccccEccccHHHHHHHHHcccEccccccEEEEccccccccccccccccccEEEEccccccHEEEccccccccccccccEEEEcccccHHHccccccccccccEEEEEccccHHHcccHHHHHHHHHHcEEEEcccHcHHHHHccccccccccEEEcccccEEEEcccccccEccccccccc
Coil and Loop (DISEMBL)
MIFLLFYFFNihthahtfayfqvgipsslvnlnvsrcdKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSfclenytlefpslervsmthcpnmktfshgilstpklhkvqvtekeegelhhwegnkLNSTIQKCYEEMigfrdmeylqlsyfphlkeiwhgqalpvsfFNNLARLVVddctnmssaipANLLRCLNnlqwlevrncdsiEEVLHLeeqnadkehrgplfpklyglrlidlpklkrfcnftgniielpelqhltiqncpdmetFISNSVVhvttdnkepqkltseENFLLAHqvqplfdekvsfprlRWLELSGLHKVQHLWKENDESNKAFANLESLEISecsklqklvppswhlenlealevskchglinlltfstseSLVNLGRMMIADCKMIEQIIQLQVgeeakdcnvfKELSCETMSKNEDLLSRSLRHTNAK
Flexible Loop (DISEMBL)
MIFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRhvgeeakenriaFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTfshgilstpkLHKVQVTEKeegelhhwegnklnstIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLeeqnadkehrgplfPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELScetmsknedllsrslrhtnak
Low Complexity Region (SEG)
MIFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNEDLLSRSLRHTNAK
Disordered region (IsUnstruct)
*IFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQ*****HRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTT***********ENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSC********************
Disordered Region (DISOPRED)
MIFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHL************LFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISN*V***********KLTSEENFLL***************RLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQI***********CNVFKELSCETMSKNEDLLSRSLRHT***
Disordered Region (DISEMBL)
MIFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNEDLLSRSLRHTNAK
Disordered Region (DISPRO)
MIFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNEDLLSRSLR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNEDLLSRSLRHTNAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	453	2.2.26 [Sep-21-2011]
P23799	630	Putative adenylate cyclas	N/A	no	0.615	0.442	0.241	1e-05
P26337	630	Putative adenylate cyclas	N/A	no	0.615	0.442	0.235	8e-05

>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 137/340 (40%), Gaps = 61/340 (17%)

Query: 83  EFPSLERVSMTHCPNMKTFSHGILSTPKLH-----KVQVTEKEEGELHHWEGNKLNSTIQ 137
              +LE +S+ +C N+      I + P+L      +  VT+K+   +H  +G      I 
Sbjct: 204 RLKTLEALSLDNCINITKGFDKICALPQLTSLSLCQTNVTDKDLRCIHP-DGKLKMLDIS 262

Query: 138 KCYE-----EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAI 192
            C+E      + G R +E L LS   ++ +        +  F+NL  L +  C  + SA+
Sbjct: 263 SCHEITDLTAIGGVRSLEKLSLSGCWNVTKGLE----ELCKFSNLRELDISGCLVLGSAV 318

Query: 193 PANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLK-RF 251
              +L+ L NL+ L V NC + +++  LE                   RL++L KL    
Sbjct: 319 ---VLKNLINLKVLSVSNCKNFKDLNGLE-------------------RLVNLEKLNLSG 356

Query: 252 CNFT---GNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQV 308
           C+     G +  L  L+ L I  C  +  F          +N E   L   ++F     +
Sbjct: 357 CHGVSSLGFVANLSNLKELDISGCESLVCFDGLQ----DLNNLEVLYLRDVKSFTNVGAI 412

Query: 309 QPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSW 368
           + L        ++R L+LSG  ++  L        +    LE L +  C ++     P W
Sbjct: 413 KNL-------SKMRELDLSGCERITSL-----SGLETLKGLEELSLEGCGEIMSF-DPIW 459

Query: 369 HLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408
            L +L  L VS+C    NL   S  + L  L  M +  C+
Sbjct: 460 SLYHLRVLYVSECG---NLEDLSGLQCLTGLEEMYLHGCR 496

May be involved in the postranscriptional regulation of genes in VSG expression sites.
Trypanosoma brucei brucei (taxid: 5702)

>sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1

 Score = 48.9 bits (115), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 135/340 (39%), Gaps = 61/340 (17%)

Query: 83  EFPSLERVSMTHCPNMKTFSHGILSTPKLH-----KVQVTEKEEGELHHWEGNKLNSTIQ 137
              +LE +S+  C N+      I + P+L      +  VT+K+   +H  +G        
Sbjct: 204 RLKTLEALSLDSCINITKGFDKICALPQLTSLSLCQTNVTDKDLRCIHP-DGKLKVLRYS 262

Query: 138 KCYE-----EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAI 192
            C+E      + G R +E L LS   ++ +        +  F+NL  L +  C  + SA+
Sbjct: 263 SCHEITDLTAIGGMRSLEKLSLSGCWNVTKGLE----ELCKFSNLRELDISGCLVLGSAV 318

Query: 193 PANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLK-RF 251
              +L+ L NL+ L V NC + +++  LE                   RL++L KL    
Sbjct: 319 ---VLKNLINLKVLSVSNCKNFKDLNGLE-------------------RLVNLDKLNLSG 356

Query: 252 CNFT---GNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQV 308
           C+     G +  L  L+ L I  C  +  F          +N E   L   ++F     +
Sbjct: 357 CHGVSSLGFVANLSNLKELDISGCESLVCFDGLQ----DLNNLEVLYLRDVKSFTNVGAI 412

Query: 309 QPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSW 368
           + L        ++R L+LSG  ++  L        +    LE L +  C ++     P W
Sbjct: 413 KNL-------SKMRELDLSGCERITSL-----SGLETLKGLEELSLEGCGEIMSF-DPIW 459

Query: 369 HLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408
            L +L  L VS+C    NL   S  E +  L  + +  C+
Sbjct: 460 SLHHLRVLYVSECG---NLEDLSGLEGITGLEELYLHGCR 496

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma equiperdum (taxid: 5694)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.838	0.154	0.341	1e-45
224110992	2359	cc-nbs-lrr resistance protein [Populus t	0.554	0.106	0.420	2e-42
358344903	2248	Cc-nbs-lrr resistance protein [Medicago	0.845	0.170	0.304	7e-33
328447249	3916	Rpp4 candidate R3 [Glycine max]	0.894	0.103	0.279	2e-29
353685492	2756	Rpp4C3 [Phaseolus vulgaris]	0.545	0.089	0.343	1e-27
357504319	1022	Resistance protein RGC2 [Medicago trunca	0.668	0.296	0.337	2e-27
328447253	3695	Rpp4 candidate R10 [Glycine max]	0.569	0.069	0.327	3e-27
358344919	1995	NBS/LRR resistance protein-like protein	0.456	0.103	0.383	5e-27
357439633	1039	Rpp4 candidate [Medicago truncatula] gi|	0.481	0.209	0.367	2e-26
255563252	1603	Disease resistance protein RPS5, putativ	0.728	0.205	0.288	5e-26

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 151/442 (34%), Positives = 225/442 (50%), Gaps = 62/442 (14%)

Query: 29   LVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLE 88
            L  + VS C  + EI+ + G+E  E+ I FSKL+ L LD L  LT+ C  N  ++FPSLE
Sbjct: 1454 LGEMKVSNCKMLREIVANEGDEM-ESEITFSKLESLRLDDLTRLTTVCSVNCRVKFPSLE 1512

Query: 89   RVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRD 148
             + +T CP M+ FSHGI++ PKL KV +T  +EG+     G+ LN+T Q+ Y EM+G   
Sbjct: 1513 ELIVTACPRMEFFSHGIITAPKLEKVSLT--KEGDKWRSVGD-LNTTTQQLYREMVGLNG 1569

Query: 149  MEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEV 208
            +++LQLS FP L E WH Q LP  FF NL  LVVD+C+  SS++P+NLL  LN L+ LEV
Sbjct: 1570 VQHLQLSEFPTLVEKWHDQ-LPAYFFYNLKSLVVDNCSFPSSSVPSNLLPFLNELEVLEV 1628

Query: 209  RNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC-NFTGNIIELPELQHL 267
            RNCDS+ +V   E  N D  + G L P L    LIDLP+L+    + +  I     L  L
Sbjct: 1629 RNCDSLAKVFDFEWSN-DYGYAGHL-PNLKKFHLIDLPRLRHIWDDISSEISGFKNLTVL 1686

Query: 268  TIQNCPDMETFISNSVV--------HVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFP 319
             I NC  +  +I N ++         V   N    +    E   LA +  P    ++ FP
Sbjct: 1687 NIHNCSSLR-YIFNPIICMGLVQLQEVEVRNCALVQAIIREG--LAKEEAP---NEIIFP 1740

Query: 320  RLRWLELSGLHKVQHLWK---------------------------ENDESNKAFANLES- 351
             L+ + L  L  + + +                               ESN     +E+ 
Sbjct: 1741 LLKSISLESLPSLINFFSGSGIVRCPSLKEITIVNCPATFTCTLLRESESNATDEIIETK 1800

Query: 352  LEISECSKLQKL---VPPSWH---------LENLEALEVSKCHGLINLLTFSTSESLVNL 399
            +E SE   L+     +   WH         +++L +L V  C  L + L+ S  ++LV+L
Sbjct: 1801 VEFSELKILKLFSINIEKIWHAHQLEMYASIQHLASLTVDGCGHLKHALSSSMVQTLVHL 1860

Query: 400  GRMMIADCKMIEQIIQLQVGEE 421
             ++ + +C+M+E++I  +  EE
Sbjct: 1861 KKLEVCNCRMMEEVIATEGFEE 1882

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 151/257 (58%), Gaps = 6/257 (2%)

Query: 29   LVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLE 88
            LV L V  C  + EI+   G E  ++ I FSKL+ L L  L  LTSFC  NY   FPSL+
Sbjct: 1544 LVKLIVVNCKLVTEIVAKQGGEINDD-IIFSKLEYLELVRLENLTSFCPGNYNFIFPSLK 1602

Query: 89   RVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRD 148
             + +  CP M+ FS GI STPKL  V   +    E   W GN LN+T+Q+ Y +M+G   
Sbjct: 1603 GMVVEQCPKMRIFSQGISSTPKLQGVYWKKDSMNE-KCWHGN-LNATLQQLYTKMVGCNG 1660

Query: 149  MEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEV 208
            +  L+LS FP LK+ WHGQ LP + F+NL  L VD+C  +S+AIP+N+L+ +NNL++L V
Sbjct: 1661 IWSLKLSDFPQLKDRWHGQ-LPFNCFSNLGNLTVDNCAIVSTAIPSNILKFMNNLKYLHV 1719

Query: 209  RNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT-GNIIELPELQHL 267
            +NC+S+E V  LE  +A   +   L P L  L L+DLP+L+   N     I++   L+ L
Sbjct: 1720 KNCESLEGVFDLEGLSAQAGY-DRLLPNLQELHLVDLPELRHIWNRDLPGILDFRNLKRL 1778

Query: 268  TIQNCPDMETFISNSVV 284
             + NC  +    S S+ 
Sbjct: 1779 KVHNCSSLRNIFSPSMA 1795

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344903|ref|XP_003636525.1| Cc-nbs-lrr resistance protein [Medicago truncatula] gi|355502460|gb|AES83663.1| Cc-nbs-lrr resistance protein [Medicago truncatula]

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 145/476 (30%), Positives = 222/476 (46%), Gaps = 93/476 (19%)

Query: 29   LVNLNVSRCDKIEEIIRHVGEEAKEN-RIAFSKLKVLILDYLPTLTSFCLENYTLEFPSL 87
            L  L +  C  +EEII  V     EN  IAF  L++L L+ LP+L  FC     ++FPSL
Sbjct: 1420 LTVLQIEDCSSLEEIITGV-----ENVDIAFVSLQILNLECLPSLVKFCSSECFMKFPSL 1474

Query: 88   ERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFR 147
            E+V +  CP MK FS G  STP L KV++ E +     HW+GN LN+TI   +E+ +GF 
Sbjct: 1475 EKVIVGECPRMKIFSAGHTSTPILQKVKIAENDSE--WHWKGN-LNNTIYNMFEDKVGFV 1531

Query: 148  DMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAI-PANLLRCLNNLQWL 206
              ++LQLS +P LKE+W+GQ    + F +L  LVV  C  +S  +   NLL  L NL+ L
Sbjct: 1532 SFKHLQLSEYPELKELWYGQH-EHNTFRSLKYLVVHKCDFLSDVLFQPNLLEVLMNLEEL 1590

Query: 207  EVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLK----------------- 249
            +V +C+S+E V  L+++ A KE       +L  L++ +LPKLK                 
Sbjct: 1591 DVEDCNSLEAVFDLKDEFA-KEIVVRNSTQLKKLKISNLPKLKHVWKEDAFPSLDTLKLS 1649

Query: 250  --------------RFCNFTGNIIE----------------LPELQHLTIQNCPDMETFI 279
                            CN T  I++                   L+HL I NCP ME  I
Sbjct: 1650 SLLNLNKVWDDNHQSMCNLTSLIVDNCVGLKYLFPSTLVKSFMNLKHLEISNCPMMEEII 1709

Query: 280  S-----NSVVHVTTDNKEPQKLTSEENF--LLAHQVQPLFDEKVSFPRLRWLELSGLHKV 332
            +     N++  V     E   L   +N   +  HQ          F  L+ LE++   K+
Sbjct: 1710 AKKERNNALKEVHLLKLEKIILKDMDNLKSIWHHQ----------FETLKMLEVNNCKKI 1759

Query: 333  QHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLE----ALEVSKCHGLINLL 388
              ++  + ++   +  LE LE++ C+ ++++   +++  N E     L+     GL  L 
Sbjct: 1760 VVVFPSSMQN--TYNELEKLEVTNCALVEEIFELNFNENNSEEVMTQLKEVTIDGLFKLK 1817

Query: 389  TFSTSE-----SLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELS---CETM 436
               + +     S  NL  +++  C  +E ++ L V   A  C+  KEL    CE M
Sbjct: 1818 KIWSGDPQGILSFQNLIYVLLDGCTSLEYLLPLSV---ATRCSHLKELGIKWCENM 1870

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|328447249|gb|AEB06127.1| Rpp4 candidate R3 [Glycine max]

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 205/437 (46%), Gaps = 32/437 (7%)

Query: 29   LVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLE 88
            L +L++S C+ ++EI++   E+A    I F  L+ ++LD LP L  F   N TL F  LE
Sbjct: 3297 LESLSISECESMKEIVKEEEEDASA-EIVFPSLRTIMLDSLPRLVRFYSGNATLYFMRLE 3355

Query: 89   RVSMTHCPNMKTFSHGILSTPKLHKVQV-TEKEEGELHHWEGNKLNSTIQKCYEEMI--G 145
              ++  C NMKTFS GI+  P L  ++  TE  +   HH     LN+TIQ  + + +   
Sbjct: 3356 EATIAECQNMKTFSEGIIEAPLLEGIKTSTEDTDLTSHH----DLNTTIQTLFHQQVEKS 3411

Query: 146  FRDMEYLQLSYFPHLKEIWHGQALPV---SFFNNLARLVVDDCTNMSSAIPANLLRCLNN 202
              D+E L+     HL+EIW G  +P+   + FN+L  L+V +C ++S+ IP  LLR L N
Sbjct: 3412 ACDIENLKFGDHHHLEEIWLG-VVPIPSNNCFNSLKSLIVVECESLSNVIPFYLLRFLCN 3470

Query: 203  LQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGN-IIEL 261
            L+ +EV NC S++ +  +E    D +    +   L  L L  LP L+   N   + I+  
Sbjct: 3471 LKEIEVSNCQSVKAIFDMEGTEVDMKPASQISLPLKKLILNQLPNLEHIWNLNPDEILSF 3530

Query: 262  PELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRL 321
             E Q + I NC  +++  + SV             T EE F+    V     ++ +F  L
Sbjct: 3531 QEFQEVCISNCQSLKSLFTTSVASHLAMLDVRSCATLEEIFVENEAVMKGETKQFNFHCL 3590

Query: 322  RWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKC 381
              L L  L ++++ +  N +    +  L  L++  C KL KL     H   +  +E   C
Sbjct: 3591 TTLTLWELPELKYFY--NGKHLLEWPMLTQLDVYHCDKL-KLFTTEHHSGEVADIEYPLC 3647

Query: 382  HGLINLLTFST--------------SESLVNLGRMMIADCKMIE--QIIQLQVGEEAKDC 425
              +     FS                ++++  G+ +     +++  ++++L    E  + 
Sbjct: 3648 TSIDQQAVFSVEKVMPSLEHQANTCKDNMIGQGQFVANAAHLLQNLKVVKLMCYHEDDES 3707

Query: 426  NVFKELSCETMSKNEDL 442
            N+F     E +S  E+L
Sbjct: 3708 NIFSSGLLEEISSIENL 3724

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353685492|gb|AER13169.1| Rpp4C3 [Phaseolus vulgaris]

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 138/259 (53%), Gaps = 12/259 (4%)

Query: 29   LVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLE 88
            LV L VS C+ +E I+    ++ ++  I F +LK + L  L +LT FC     L+FPSLE
Sbjct: 1483 LVTLKVSFCESMEIIV----QQEEQQVIEFRQLKAIELVSLESLTCFCSSKKCLKFPSLE 1538

Query: 89   RVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRD 148
             + +T CP MKTF     S P L KV V   E+ +  +WEGN LN+T++K     + + D
Sbjct: 1539 NLLVTDCPKMKTFCEK-QSAPSLRKVHVAAGEK-DTWYWEGN-LNATLRKISTGQVSYED 1595

Query: 149  MEYLQLSYFPHLKEIWHGQAL-PVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLE 207
             + L L+   H + IW  +A+ P  +F NL +LVV+D     S IP+ +L CL +L+ LE
Sbjct: 1596 SKELTLTEDSH-QNIWSKKAVFPYKYFGNLKKLVVEDIKKKESVIPSKILACLKSLEELE 1654

Query: 208  VRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT-GNIIELPELQH 266
            V  C+  + V  + +   +K +   +  +L  L L +LP L R  N     I+  P LQ 
Sbjct: 1655 VYGCEKAKVVFDIHDIEMNKTN--GMVSRLKKLDLDELPNLTRVWNKNPQGIVSFPYLQE 1712

Query: 267  LTIQNCPDMETFISNSVVH 285
            + + +C  + T   + +V 
Sbjct: 1713 VIVSDCSGITTLFPSPLVR 1731

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357504319|ref|XP_003622448.1| Resistance protein RGC2 [Medicago truncatula] gi|355497463|gb|AES78666.1| Resistance protein RGC2 [Medicago truncatula]

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 162/314 (51%), Gaps = 11/314 (3%)

Query: 29  LVNLNVSRCDKIEEIIRHVG-EEAKENRIAFSKLKVLILDYLPTLTSFC-LENYTLEFPS 86
           L  + V  C K++EI+ + G EE +   + FSKL  L L  L  LTSFC  +N   +FPS
Sbjct: 337 LAKMKVIEC-KMQEIVTNEGNEEDRMIEVVFSKLVYLELVGLHYLTSFCSYKNCEFKFPS 395

Query: 87  LERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGF 146
           LE + +  C  M+TF+ G  + PKL  + V E EE E  +WEG+ LN+TIQK +++ I F
Sbjct: 396 LEILVVRECVRMETFTVGQTTAPKLQNIHVIEGEEEEKQYWEGD-LNTTIQKKFKDKISF 454

Query: 147 RDMEYLQL-SYFPHLKEIWHGQALPVSF-FNNLARLVVDDCTNMSSAIPANLLRCLNNLQ 204
           + ME L L +Y   L+++WH   L   + F NL  LVV    N+  AIP++LL C  NL 
Sbjct: 455 KYMERLNLINYHDLLEQVWHCSDLVQEYMFRNLTSLVVSYRNNLVHAIPSHLLPCFENLD 514

Query: 205 WLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTG-NIIELPE 263
            LEV +C +++ + +L +    K   G    +L  L L +LP L+   +     I  L  
Sbjct: 515 ELEVSDCSAVKVIFNLNDTMVTKA-LGKF--RLKKLLLYNLPILEHVWDKDPEGIFFLQV 571

Query: 264 LQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENF-LLAHQVQPLFDEKVSFPRLR 322
           LQ +++  C +++     SV    T  K       EE   + +    P   E   FP+L 
Sbjct: 572 LQEMSVTECDNLKYLFPASVAKDLTRLKVLSATNCEELVEIFSKDEIPAEGEIKEFPQLT 631

Query: 323 WLELSGLHKVQHLW 336
            + L  L ++++ +
Sbjct: 632 TMHLINLPRLKYFY 645

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|328447253|gb|AEB06131.1| Rpp4 candidate R10 [Glycine max]

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 140/275 (50%), Gaps = 17/275 (6%)

Query: 21   FQVGIPSSLVNLNV---SRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCL 77
            F      SLV L +    +C+ I+EI+R   E      + F +L  L L+ L  L  F  
Sbjct: 3064 FTSSTAKSLVQLKILYIEKCESIKEIVRKEDESDASEEMIFGRLTKLRLESLGRLVRFYS 3123

Query: 78   ENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGEL--HHWEGNKLNST 135
             + TL+F  LE  ++  CPNM TFS G ++ P    ++ T +E+ +L  HH     LNST
Sbjct: 3124 GDGTLQFSCLEEATIAECPNMNTFSEGFVNAPMFEGIK-TSREDSDLTFHH----DLNST 3178

Query: 136  IQKCYEEMI--GFRDMEYLQLSYFPHLKEIWHGQALPV---SFFNNLARLVVDDCTNMSS 190
            I+  + + +     D+E L+     HL+EIW G  +P+   + FN+L  L+V +C ++S+
Sbjct: 3179 IKMLFHQQVEKSASDIENLKFGDHHHLEEIWLG-VVPIPSNNCFNSLKSLIVVECESLSN 3237

Query: 191  AIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKR 250
             IP  LLR L NL+ +EV NC S++ +  +E   AD +    +   L  L L  LP L+ 
Sbjct: 3238 VIPFYLLRFLCNLKEIEVSNCQSVKAIFDMEGTEADMKPASQISLPLKKLILNQLPNLEH 3297

Query: 251  FCNFTGN-IIELPELQHLTIQNCPDMETFISNSVV 284
              N   + I+   E Q + I NC  +++    SV 
Sbjct: 3298 IWNLNPDEILSFQEFQEVCISNCQSLKSLFPTSVA 3332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344919|ref|XP_003636533.1| NBS/LRR resistance protein-like protein [Medicago truncatula] gi|355502468|gb|AES83671.1| NBS/LRR resistance protein-like protein [Medicago truncatula]

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 130/227 (57%), Gaps = 20/227 (8%)

Query: 29   LVNLNVSRCDKIEEIIRHVGEEAKEN-RIAFSKLKVLILDYLPTLTSFCLENYTLEFPSL 87
            L  L +  C+ +EE++  V     EN  IAF  L++L L+ LP+L  F      ++FP L
Sbjct: 1362 LTVLQIKDCNSLEEVVNGV-----ENVDIAFISLQILNLECLPSLIKFSSSKCFMKFPLL 1416

Query: 88   ERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFR 147
            E V +  CP MK FS G  STP L KV++ E     L  W+GN LN+TI   +E  + F 
Sbjct: 1417 EEVIVRECPQMKIFSEGNTSTPILQKVKIAENNSEWL--WKGN-LNNTIYNMFENKVAFG 1473

Query: 148  DMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAI-PANLLRCLNNLQWL 206
             ++YL LS +P LK++W+GQ L  + F +L  LVV+ C  +S  + P+N+++ L+ L+ L
Sbjct: 1474 KLKYLALSDYPELKDVWYGQ-LHCNVFCSLKHLVVERCDFLSHVLFPSNVMKVLHTLEEL 1532

Query: 207  EVRNCDSIEEVLHLEEQNAD----KEHRGPLFPKLYGLRLIDLPKLK 249
            EV++CDS+E V  ++   +     KE+      +L  L L  LPKLK
Sbjct: 1533 EVKDCDSLEAVFDVKGMKSQEILIKEN-----TQLKRLTLSGLPKLK 1574

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439633|ref|XP_003590094.1| Rpp4 candidate [Medicago truncatula] gi|355479142|gb|AES60345.1| Rpp4 candidate [Medicago truncatula]

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 128/226 (56%), Gaps = 8/226 (3%)

Query: 29  LVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLE 88
           L  + +  C+ +E+I+    +E KE  I F  L+ L L  LP +  FC     + FP LE
Sbjct: 409 LTTMKIKMCNLLEDIVNGKEDETKE--IEFCSLQSLELISLPRVCRFCSCPCPITFPLLE 466

Query: 89  RVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRD 148
            V +  CP M+  S G+ +TP L  VQ+  +E  E +HWEG+ LN +++K +++ + FR+
Sbjct: 467 VVVVKECPRMELLSLGVTNTPNLQIVQI--EESNEENHWEGD-LNRSVKKLFDDKVAFRE 523

Query: 149 MEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAI-PANLLRCLNNLQWLE 207
            +YL LS    L++IW+G+ L  + F NL  LVV+ C  +S  + P+N+++ L+ L+ LE
Sbjct: 524 FKYLALSDHSELEDIWYGR-LDHNVFCNLKHLVVERCDFLSQVLFPSNVVQVLHGLEELE 582

Query: 208 VRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253
           VRNCDS+E V  + +    KE       +L  L L  LP LK   N
Sbjct: 583 VRNCDSLEVVFDVRDLKT-KEILIKQRTRLKSLTLSGLPNLKHIWN 627

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 188/392 (47%), Gaps = 62/392 (15%)

Query: 29   LVNLNVSRCDKIEEIIRHVGEEAKEN---RIAFSKLKVLILDYLPTLTSFCLENYTLEFP 85
            L  + V  C  +EEI+   G E  +N    +  ++L  L L  LP   SFC +       
Sbjct: 854  LQQMKVVDCANLEEIV-ACGSEDTDNDYEAVKLTQLCSLTLKRLPMFKSFCSKKKVSPIS 912

Query: 86   SLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIG 145
               +  +T    +K  +      PK           GEL    G+ L       + EM  
Sbjct: 913  LRVQKQLTTDTGLKEIA------PK-----------GEL----GDPL-----PLFNEMFC 946

Query: 146  FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQW 205
            F ++E L+LS     ++I   Q   +S  +NL  L+V+ C N+     ++L++ L  L+ 
Sbjct: 947  FPNLENLELSSIA-CEKICDDQLSAIS--SNLMSLIVERCWNLKYLFTSSLVKNLLLLKR 1003

Query: 206  LEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQ 265
            LEV +C S+E ++  EE   ++ +R  LFP+L  L+L +LP + RFC+  G  +E   L+
Sbjct: 1004 LEVFDCMSVEGIIVAEELVEEERNRKKLFPELDFLKLKNLPHITRFCD--GYPVEFSSLR 1061

Query: 266  HLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLE 325
             L I+NCP +  F+S S      +++E + + SE+N     + QPLF+EKV+FP L  +E
Sbjct: 1062 KLLIENCPALNMFVSKSPSADMIESREAKGMNSEKNH--HTETQPLFNEKVAFPSLEEIE 1119

Query: 326  LSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLI 385
            LS +  ++ +W  N     +F  L+ + I+ C KL+ + P S+ LE  + LE        
Sbjct: 1120 LSYIDNLRRIW-HNQLDAGSFCKLKIMRINGCKKLRTIFP-SYLLERFQCLE-------- 1169

Query: 386  NLLTFSTSESLVNLGRMMIADCKMIEQIIQLQ 417
                           ++ ++DC  +E+I +LQ
Sbjct: 1170 ---------------KLSLSDCYALEEIYELQ 1186

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.415	0.132	0.277	5.4e-05
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.534	0.266	0.243	5.8e-05
TAIR|locus:2117149	1201	AT4G19050 [Arabidopsis thalian	0.728	0.274	0.246	8.2e-05
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.783	0.179	0.248	0.00064

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 86 (35.3 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
 Identities = 64/231 (27%), Positives = 97/231 (41%)

Query:   233 LFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKE 292
             LFPKL  L + D    K F    G   +   L+ L I++CP++ETF    +         
Sbjct:  1186 LFPKLRSLSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPNLETFPQGGL-------PT 1238

Query:   293 PQKLTSEENFLLAH--QVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLE 350
             P KL+S    LL++  ++Q L  EK+ F     L L  + K   +  E        +NL 
Sbjct:  1239 P-KLSS---MLLSNCKKLQAL-PEKL-FGLTSLLSLF-IIKCPEI--ETIPGGGFPSNLR 1289

Query:   351 SLEISECSKLQKLVPPSW---HLENLEALEVSKCH---------GLINLLTFSTS----E 394
             +L IS C KL   +   W    LENL  LE+   +         GL+    FS      E
Sbjct:  1290 TLCISLCDKLTPRI--EWGLRDLENLRNLEIDGGNEDIESFPEEGLLPKSVFSLRISRFE 1347

Query:   395 SLVNLGRMMIADCKMIEQI-------IQLQVGEEAKDCNVFKELSCETMSK 438
             +L  L R    D K IE +       +Q+ + E+    +  +  SC  +++
Sbjct:  1348 NLKTLNRKGFHDTKAIETMEISGCDKLQISIDEDLPPLSCLRISSCSLLTE 1398

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 65/267 (24%), Positives = 114/267 (42%)

Query:   144 IGFRDMEYLQLSYFPHLKEIWH----GQALPV--SFFNNLARLVVDDC--TNMSSAIPAN 195
             + F  +  + LS   +L E++H    G  + V      NL +L   D   T     IP +
Sbjct:   565 LSFTSITEIPLS-IKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRD 623

Query:   196 LLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPL--FPKL--YGLRLIDLPKLKRF 251
              +  L+ L+ L +    +  E+    E  A++     L     L   G+ ++ L  LK  
Sbjct:   624 AICWLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETLKTL 683

Query:   252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPL 311
               F G + +   +QHL ++ C ++  F   ++  +T   +  ++L+ +    L + V P 
Sbjct:   684 FEF-GALHK--HIQHLHVEECNELLYF---NLPSLTNHGRNLRRLSIKSCHDLEYLVTPA 737

Query:   312 FDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSW--H 369
               E    P L  L L  LH +  +W  N  S     N+  + IS C+KL+ +   SW   
Sbjct:   738 DFENDWLPSLEVLTLHSLHNLTRVWG-NSVSQDCLRNIRCINISHCNKLKNV---SWVQK 793

Query:   370 LENLEALEVSKCHGLINLLTFSTSESL 396
             L  LE +E+  C  +  L++   S S+
Sbjct:   794 LPKLEVIELFDCREIEELISEHESPSV 820

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2117149 AT4G19050 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 8.2e-05, P = 8.2e-05
 Identities = 94/381 (24%), Positives = 166/381 (43%)

Query:    81 TLEFPSLERVS-MTHCPNMKTFSHGILSTPKLHKVQV--TEKEEG---ELHHWEGNK-LN 133
             T+E  S+ R   + HC  ++   + I+ T KL  + +    K E     +  W+  K  N
Sbjct:   534 TIEKLSMLRCFILRHCSELQDLPNFIVETRKLEVIDIHGARKLESYFDRVKDWKDYKGKN 593

Query:   134 STI-QKCYEEMIGFRDMEYLQLSYFPHLKEIWHG-QALPVSFFNNLARLVVDDCTNMSSA 191
                 Q    E + F + + ++L  F HLK+  +    +P+     L RL++ +CT +   
Sbjct:   594 KNFAQLQLLEHLDFSETKIIRLPIF-HLKDSTNDFSTMPI-----LTRLLLRNCTRLKR- 646

Query:   192 IPANLLRCLNNLQWLEVRNCDSIEEVLH--LEEQNADK--EHRGPLFPKLYGL--RLIDL 245
             +P   LR L NLQ L+      + E+L   LEE+   +  +      P+L      +++L
Sbjct:   647 LPQ--LRPLTNLQILDACGATDLVEMLEVCLEEKKELRILDMSKTSLPELADTIADVVNL 704

Query:   246 PKLK-RFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLL 304
              KL  R C+    I ELP ++ LT      +E F  +  + +   N        E ++L 
Sbjct:   705 NKLLLRNCSL---IEELPSIEKLT-----HLEVFDVSGCIKLKNINGS----FGEMSYL- 751

Query:   305 AHQVQPLFDEKVSFPRLRWLELSGLHK--VQHLWKENDESN-KAFANLESLEISECSKLQ 361
              H+V  L +  +S    +  ELS L +  ++   K     N +   NLE  ++S C++L+
Sbjct:   752 -HEVN-LSETNLSELPDKISELSNLKELIIRKCSKLKTLPNLEKLTNLEIFDVSGCTELE 809

Query:   362 KLVPPSWHLENLEAL-EVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGE 420
              +       ENL  L +V+     +  L    SE L NL  +++ +C  ++ +  L   E
Sbjct:   810 TI---EGSFENLSCLHKVNLSETNLGELPNKISE-LSNLKELILRNCSKLKALPNL---E 862

Query:   421 EAKDCNVFKELSCETMSKNED 441
             +     +F    C  + K E+
Sbjct:   863 KLTHLVIFDVSGCTNLDKIEE 883

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 0.00064, P = 0.00064
 Identities = 105/422 (24%), Positives = 167/422 (39%)

Query:    26 PSSLVNLNV--SRCDKIEEIIRHVGEEAKENRIAFSKLKVLI-LDYLPTL-TSFCLENYT 81
             P  LV LN+  S C  + E     G +A  N + +  L   I L  LP L T+  LE   
Sbjct:   640 PEFLVELNMPSSTCHTLWE-----GSKALRN-LKWMDLSYSISLKELPDLSTATNLEELI 693

Query:    82 LEFPSLERVSMTHCPN----MKTFS-HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTI 136
             L++  +  V +  C      ++    HG  S  +L     T+   G L   + N+ +S +
Sbjct:   694 LKY-CVSLVKVPSCVGKLGKLQVLCLHGCTSILELPSF--TKNVTG-LQSLDLNECSSLV 749

Query:   137 QKCYEEMIGFR-DMEYLQLSYFPHLKEIWHGQALPVSF--FNNLARLVVDDCTNMSSAIP 193
             +      IG   +++ L L     LK       LP+S   F NL + +++ C   SS + 
Sbjct:   750 E--LPSSIGNAINLQNLDLGCLRLLK-------LPLSIVKFTNLKKFILNGC---SSLVE 797

Query:   194 ANLLRCLNNLQWLEVRNCDSIEEVLH-----LEEQNADKEHRGPL--FPKLYG----LRL 242
                +    NLQ L++ NC S+ E+       +  QN D  +   L   P   G    L +
Sbjct:   798 LPFMGNATNLQNLDLGNCSSLVELPSSIGNAINLQNLDLSNCSSLVKLPSFIGNATNLEI 857

Query:   243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENF 302
             +DL K         +I  +  L  L +  C  +   + +SV ++           SE   
Sbjct:   858 LDLRKCSSLVEIPTSIGHVTNLWRLDLSGCSSLVE-LPSSVGNI-----------SELQV 905

Query:   303 LLAHQVQPLFDEKVSFPRLR--W-LELSGLHKVQHLWKENDESNKAFANLESLEISECSK 359
             L  H    L     SF      W L+LSG   +  L      S     NL+ L +  CS 
Sbjct:   906 LNLHNCSNLVKLPSSFGHATNLWRLDLSGCSSLVEL----PSSIGNITNLQELNLCNCSN 961

Query:   360 LQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVG 419
             L KL     +L  L  L +++C  L  L    ++ +L +L R+ + DC   +   ++   
Sbjct:   962 LVKLPSSIGNLHLLFTLSLARCQKLEAL---PSNINLKSLERLDLTDCSQFKSFPEISTN 1018

Query:   420 EE 421
              E
Sbjct:  1019 IE 1020


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      453       453   0.00093  118 3  11 22  0.37    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  303 KB (2155 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  41.01u 0.14s 41.15t   Elapsed:  00:00:02
  Total cpu time:  41.01u 0.14s 41.15t   Elapsed:  00:00:02
  Start:  Tue May 21 05:01:13 2013   End:  Tue May 21 05:01:15 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	453
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-06

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 79/286 (27%), Positives = 128/286 (44%), Gaps = 38/286 (13%)

Query: 134 STIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALP-VSFFNNLARLVVDDCTNMSSAI 192
           S ++K ++ +     +  + L    +LKEI      P +S   NL  L + DC+++   +
Sbjct: 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEI------PDLSMATNLETLKLSDCSSLVE-L 673

Query: 193 PANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC 252
           P+++ + LN L+ L++  C+++E +             G     LY L L    +LK F 
Sbjct: 674 PSSI-QYLNKLEDLDMSRCENLEIL-----------PTGINLKSLYRLNLSGCSRLKSFP 721

Query: 253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLF 312
           + + NI  L +L    I      E F SN    +  +N +   L   ++  L  +VQPL 
Sbjct: 722 DISTNISWL-DLDETAI------EEFPSN----LRLENLDELILCEMKSEKLWERVQPLT 770

Query: 313 D-EKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLE 371
               +  P L  L LS +  +  L      S +    LE LEI  C  L+ L P   +LE
Sbjct: 771 PLMTMLSPSLTRLFLSDIPSLVEL----PSSIQNLHKLEHLEIENCINLETL-PTGINLE 825

Query: 372 NLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKM-IEQIIQL 416
           +LE+L++S C  L      ST+ S +NL R  I +    IE+   L
Sbjct: 826 SLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNL 871

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	453
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.68
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.68
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.63
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.57
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.52
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.36
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.35
KOG4341	483	consensus F-box protein containing LRR [General fu	99.32
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.32
KOG4341	483	consensus F-box protein containing LRR [General fu	99.31
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.2
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.13
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.1
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.07
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.05
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.87
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.6
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.58
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.58
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.56
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.46
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.44
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.39
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.34
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.28
PRK15386	426	type III secretion protein GogB; Provisional	98.22
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.14
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.04
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.04
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.83
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.75
PRK15386	426	type III secretion protein GogB; Provisional	97.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.31
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.06
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.98
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.79
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.7
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.63
PLN03150	623	hypothetical protein; Provisional	96.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.35
PLN03150	623	hypothetical protein; Provisional	96.33
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.33
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.51
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	94.93
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.87
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.86
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.84
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.81
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.34
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.5
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.21
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.4
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.35
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	91.01
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.91
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.78
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	88.97
KOG2123	388	consensus Uncharacterized conserved protein [Funct	88.53
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	88.52
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	88.28
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	87.43
KOG2123	388	consensus Uncharacterized conserved protein [Funct	86.33
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	81.35

>PLN03210 Resistant to P

Probab=99.87  E-value=1.5e-21  Score=215.38  Aligned_cols=314  Identities=17%  Similarity=0.232  Sum_probs=160.0

Q ss_pred             cccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCcc
Q 012933           27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL  106 (453)
Q Consensus        27 ~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  106 (453)
                      ++|+.|.+.++ .++.+|..+.         +.+|++|++.+ .+++.++.+  ...+++|+.++++++..++.+|. +.
T Consensus       589 ~~Lr~L~~~~~-~l~~lP~~f~---------~~~L~~L~L~~-s~l~~L~~~--~~~l~~Lk~L~Ls~~~~l~~ip~-ls  654 (1153)
T PLN03210        589 PKLRLLRWDKY-PLRCMPSNFR---------PENLVKLQMQG-SKLEKLWDG--VHSLTGLRNIDLRGSKNLKEIPD-LS  654 (1153)
T ss_pred             cccEEEEecCC-CCCCCCCcCC---------ccCCcEEECcC-ccccccccc--cccCCCCCEEECCCCCCcCcCCc-cc
Confidence            45777777775 5677776542         56777777776 345555444  45677777777777766666653 55


Q ss_pred             CCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCC
Q 012933          107 STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT  186 (453)
Q Consensus       107 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~  186 (453)
                      .+++|+.|++.+|..+              ..++..+..+++|+.|++++|..+..++...     .+++|++|++++|.
T Consensus       655 ~l~~Le~L~L~~c~~L--------------~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-----~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        655 MATNLETLKLSDCSSL--------------VELPSSIQYLNKLEDLDMSRCENLEILPTGI-----NLKSLYRLNLSGCS  715 (1153)
T ss_pred             cCCcccEEEecCCCCc--------------cccchhhhccCCCCEEeCCCCCCcCccCCcC-----CCCCCCEEeCCCCC
Confidence            6777777777766443              2344455566777777777777666655432     35677777777776


Q ss_pred             CccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc-----CCCcccCC
Q 012933          187 NMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN-----FTGNIIEL  261 (453)
Q Consensus       187 ~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-----~~~~~~~l  261 (453)
                      .+... |.    ..++|+.|+++++. +..++..-           .+++|++|.+.++....- +.     .+.....+
T Consensus       716 ~L~~~-p~----~~~nL~~L~L~~n~-i~~lP~~~-----------~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        716 RLKSF-PD----ISTNISWLDLDETA-IEEFPSNL-----------RLENLDELILCEMKSEKL-WERVQPLTPLMTMLS  777 (1153)
T ss_pred             Ccccc-cc----ccCCcCeeecCCCc-cccccccc-----------cccccccccccccchhhc-cccccccchhhhhcc
Confidence            55433 21    23566777766542 33332200           113444444433221100 00     00011123


Q ss_pred             CCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCc
Q 012933          262 PELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDE  341 (453)
Q Consensus       262 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~  341 (453)
                      ++|+.|++++|+.+..+|..   ++.+++|+.|++++|..+.       .++....+++|+.|++++|..+..++     
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~s---i~~L~~L~~L~Ls~C~~L~-------~LP~~~~L~sL~~L~Ls~c~~L~~~p-----  842 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSS---IQNLHKLEHLEIENCINLE-------TLPTGINLESLESLDLSGCSRLRTFP-----  842 (1153)
T ss_pred             ccchheeCCCCCCccccChh---hhCCCCCCEEECCCCCCcC-------eeCCCCCccccCEEECCCCCcccccc-----
Confidence            34444455444444444433   3444444445444443332       11111134455555555554444333     


Q ss_pred             ccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhH
Q 012933          342 SNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIE  411 (453)
Q Consensus       342 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~  411 (453)
                        ...++|+.|++++ +.++.+|..+..+++|+.|++.+|++++.++.  ....+++|+.+++.+|++++
T Consensus       843 --~~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        843 --DISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             --ccccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccc
Confidence              1223444455544 34444444444455555555555555554443  12334445555555555443

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=5.6e-22  Score=217.82  Aligned_cols=354  Identities=17%  Similarity=0.113  Sum_probs=179.7

Q ss_pred             chhhhhhcccchhhcc-cccCcccccceEEeccccchhhhhcccccccccccccccccceeecccccccccccccccccc
Q 012933            5 LFYFFNIHTHAHTFAY-FQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLE   83 (453)
Q Consensus         5 ~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~   83 (453)
                      .+.++++.++...-.. ..++.+++|++|++++|...+.+|..+.+        +++|++|+++++.--...+..  ...
T Consensus       189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~L~~n~l~~~~p~~--l~~  258 (968)
T PLN00113        189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG--------LTSLNHLDLVYNNLTGPIPSS--LGN  258 (968)
T ss_pred             CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc--------CCCCCEEECcCceeccccChh--HhC
Confidence            3455666655433222 23677899999999998655567776666        889999999885422233322  567


Q ss_pred             CCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCccc
Q 012933           84 FPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEI  163 (453)
Q Consensus        84 l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  163 (453)
                      +++|++|++.+|.....+|..+..+++|++|++++|.-              ...++..+..+++|++|+++++.....+
T Consensus       259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l--------------~~~~p~~~~~l~~L~~L~l~~n~~~~~~  324 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL--------------SGEIPELVIQLQNLEILHLFSNNFTGKI  324 (968)
T ss_pred             CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee--------------ccCCChhHcCCCCCcEEECCCCccCCcC
Confidence            88999999988765556777777888999999886421              1223344455666777777666532222


Q ss_pred             ccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcc-ccc----------cc----ccC
Q 012933          164 WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHL-EEQ----------NA----DKE  228 (453)
Q Consensus       164 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~-~~~----------~~----~~~  228 (453)
                      +...    ..+++|++|++++|. +....|. .+..+++|+.|+++++.-...++.. ...          +.    ...
T Consensus       325 ~~~~----~~l~~L~~L~L~~n~-l~~~~p~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~  398 (968)
T PLN00113        325 PVAL----TSLPRLQVLQLWSNK-FSGEIPK-NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK  398 (968)
T ss_pred             ChhH----hcCCCCCEEECcCCC-CcCcCCh-HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH
Confidence            2221    335666777766653 3333233 2556666666666654321111100 000          00    000


Q ss_pred             CCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccc
Q 012933          229 HRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQV  308 (453)
Q Consensus       229 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l  308 (453)
                      ....+ ++|++|++.++.--..   .+..+..+++|+.|+++++.-....+..   ...+++|+.|++++|....     
T Consensus       399 ~~~~~-~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~L~~n~~~~-----  466 (968)
T PLN00113        399 SLGAC-RSLRRVRLQDNSFSGE---LPSEFTKLPLVYFLDISNNNLQGRINSR---KWDMPSLQMLSLARNKFFG-----  466 (968)
T ss_pred             HHhCC-CCCCEEECcCCEeeeE---CChhHhcCCCCCEEECcCCcccCccChh---hccCCCCcEEECcCceeee-----
Confidence            01112 5666666665542222   2344555666666666654432222221   3345566666665553221     


Q ss_pred             cccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCccccccc
Q 012933          309 QPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLL  388 (453)
Q Consensus       309 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~  388 (453)
                        .++.....++|+.|++++| .+.......+   ..+++|+.|++++|.-...+|..+..+++|++|++++|.-...+|
T Consensus       467 --~~p~~~~~~~L~~L~ls~n-~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  540 (968)
T PLN00113        467 --GLPDSFGSKRLENLDLSRN-QFSGAVPRKL---GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP  540 (968)
T ss_pred             --ecCcccccccceEEECcCC-ccCCccChhh---hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence              1111112244555555554 2222211222   344555555555543333444444445555555554432211222


Q ss_pred             CCCcccccCCcceEEEcccc
Q 012933          389 TFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       389 ~~~~~~~l~~L~~L~i~~C~  408 (453)
                      .  ....+++|++|++++|.
T Consensus       541 ~--~~~~l~~L~~L~Ls~N~  558 (968)
T PLN00113        541 A--SFSEMPVLSQLDLSQNQ  558 (968)
T ss_pred             h--hHhCcccCCEEECCCCc
Confidence            1  22344555555555544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=8.1e-22  Score=216.55  Aligned_cols=384  Identities=16%  Similarity=0.102  Sum_probs=182.0

Q ss_pred             chhhhhhcccchhhcccc--cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccc
Q 012933            5 LFYFFNIHTHAHTFAYFQ--VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL   82 (453)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~   82 (453)
                      .+-.+++.++...-.++.  +..+++|++|+++++...+.+|..  .        +++|++|+++++.--...+..  ..
T Consensus        94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~--~--------l~~L~~L~Ls~n~~~~~~p~~--~~  161 (968)
T PLN00113         94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--S--------IPNLETLDLSNNMLSGEIPND--IG  161 (968)
T ss_pred             CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc--c--------cCCCCEEECcCCcccccCChH--Hh
Confidence            344555554432212222  336778888888887544444431  2        667777777764321122222  45


Q ss_pred             cCCCcceEeecCCCCccccccCccCCCCcceEEecccccc-------------ccccccCCccchhHHHHHHhhcCCCCc
Q 012933           83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEG-------------ELHHWEGNKLNSTIQKCYEEMIGFRDM  149 (453)
Q Consensus        83 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l-------------~~~~~~~~~~~~~~~~~~~~~~~~~~L  149 (453)
                      .+++|++|++++|.....+|..+.++++|++|++++|.-.             ..+.+.++   .....++..+..+++|
T Consensus       162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n---~l~~~~p~~l~~l~~L  238 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN---NLSGEIPYEIGGLTSL  238 (968)
T ss_pred             cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC---ccCCcCChhHhcCCCC
Confidence            5677777777776544456666666777777777654211             00111110   1111233334444555


Q ss_pred             cEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCC
Q 012933          150 EYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEH  229 (453)
Q Consensus       150 ~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  229 (453)
                      ++|+++++.....++...    ..+++|++|+++++. +.+..|.. +..+++|++|++++|.-...++.         .
T Consensus       239 ~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~---------~  303 (968)
T PLN00113        239 NHLDLVYNNLTGPIPSSL----GNLKNLQYLFLYQNK-LSGPIPPS-IFSLQKLISLDLSDNSLSGEIPE---------L  303 (968)
T ss_pred             CEEECcCceeccccChhH----hCCCCCCEEECcCCe-eeccCchh-HhhccCcCEEECcCCeeccCCCh---------h
Confidence            555555443211222111    234555555555442 22222222 44455555555555422111111         1


Q ss_pred             CCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccc-cc--
Q 012933          230 RGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLL-AH--  306 (453)
Q Consensus       230 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~--  306 (453)
                      ...+ ++|++|++.++.-...+   +..+..+++|+.|++++|.....+|..   ++.+++|+.|+++++.-... ++  
T Consensus       304 ~~~l-~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~~~~L~~L~Ls~n~l~~~~p~~~  376 (968)
T PLN00113        304 VIQL-QNLEILHLFSNNFTGKI---PVALTSLPRLQVLQLWSNKFSGEIPKN---LGKHNNLTVLDLSTNNLTGEIPEGL  376 (968)
T ss_pred             HcCC-CCCcEEECCCCccCCcC---ChhHhcCCCCCEEECcCCCCcCcCChH---HhCCCCCcEEECCCCeeEeeCChhH
Confidence            1112 55666666555422221   344556666777777665543333332   45555666666665521110 00  


Q ss_pred             --------------cccccc-cccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCC
Q 012933          307 --------------QVQPLF-DEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLE  371 (453)
Q Consensus       307 --------------~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~  371 (453)
                                    .+...+ +....+++|+.|++++|. ++......+   ..+++|+.|+++++.-...++..+..++
T Consensus       377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~-l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  452 (968)
T PLN00113        377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS-FSGELPSEF---TKLPLVYFLDISNNNLQGRINSRKWDMP  452 (968)
T ss_pred             hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE-eeeECChhH---hcCCCCCEEECcCCcccCccChhhccCC
Confidence                          000000 112344555555555552 322222222   4556666666666432233344445566


Q ss_pred             CCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933          372 NLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE  440 (453)
Q Consensus       372 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~  440 (453)
                      +|+.|++++|.-...+|..   ...++|++|++++|..-        +..+..+..++.|+.|+++++.
T Consensus       453 ~L~~L~L~~n~~~~~~p~~---~~~~~L~~L~ls~n~l~--------~~~~~~~~~l~~L~~L~Ls~N~  510 (968)
T PLN00113        453 SLQMLSLARNKFFGGLPDS---FGSKRLENLDLSRNQFS--------GAVPRKLGSLSELMQLKLSENK  510 (968)
T ss_pred             CCcEEECcCceeeeecCcc---cccccceEEECcCCccC--------CccChhhhhhhccCEEECcCCc
Confidence            6666666665443333321   12356666666666532        2223345567888888888774

>PLN03210 Resistant to P

Probab=99.86  E-value=4.7e-21  Score=211.48  Aligned_cols=346  Identities=18%  Similarity=0.250  Sum_probs=228.6

Q ss_pred             ccCcccccceEEecccc--ch----hhhhcccccccccccccc-cccceeeccccccccccccccccccCCCcceEeecC
Q 012933           22 QVGIPSSLVNLNVSRCD--KI----EEIIRHVGEEAKENRIAF-SKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTH   94 (453)
Q Consensus        22 ~~~~~~~L~~L~L~~c~--~l----~~i~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~   94 (453)
                      +|..+++|+.|.++...  ..    -.+|.++..        + ++|+.|.+.+.+ ++.++..   ..+.+|+.|++.+
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~--------lp~~Lr~L~~~~~~-l~~lP~~---f~~~~L~~L~L~~  620 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDY--------LPPKLRLLRWDKYP-LRCMPSN---FRPENLVKLQMQG  620 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhh--------cCcccEEEEecCCC-CCCCCCc---CCccCCcEEECcC
Confidence            35667888888776532  10    123333222        3 357788777643 4555443   2457788888887


Q ss_pred             CCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCcc
Q 012933           95 CPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFF  174 (453)
Q Consensus        95 c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l  174 (453)
                      + ++..++.++..+++|++++++++..+..+              + .+..+++|++|++.+|..+..++...    ..+
T Consensus       621 s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i--------------p-~ls~l~~Le~L~L~~c~~L~~lp~si----~~L  680 (1153)
T PLN03210        621 S-KLEKLWDGVHSLTGLRNIDLRGSKNLKEI--------------P-DLSMATNLETLKLSDCSSLVELPSSI----QYL  680 (1153)
T ss_pred             c-cccccccccccCCCCCEEECCCCCCcCcC--------------C-ccccCCcccEEEecCCCCccccchhh----hcc
Confidence            5 47777777777888888888765433221              1 13446788888888887776666544    557


Q ss_pred             CCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccC
Q 012933          175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF  254 (453)
Q Consensus       175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~  254 (453)
                      ++|++|++++|..++.+ |...  ++++|+.|++++|..+..++.             ..++|++|.+.+.. ++.++  
T Consensus       681 ~~L~~L~L~~c~~L~~L-p~~i--~l~sL~~L~Lsgc~~L~~~p~-------------~~~nL~~L~L~~n~-i~~lP--  741 (1153)
T PLN03210        681 NKLEDLDMSRCENLEIL-PTGI--NLKSLYRLNLSGCSRLKSFPD-------------ISTNISWLDLDETA-IEEFP--  741 (1153)
T ss_pred             CCCCEEeCCCCCCcCcc-CCcC--CCCCCCEEeCCCCCCcccccc-------------ccCCcCeeecCCCc-ccccc--
Confidence            78888888888777665 3332  677888888888876655432             22677888877654 44442  


Q ss_pred             CCcccCCCCccEEeeecCCCCcee----ccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCC
Q 012933          255 TGNIIELPELQHLTIQNCPDMETF----ISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLH  330 (453)
Q Consensus       255 ~~~~~~l~~L~~L~l~~c~~l~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~  330 (453)
                       . ...+++|+.|.+.++......    +.........++|+.|++++|..+..      ....++.+++|+.|++++|.
T Consensus       742 -~-~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~------lP~si~~L~~L~~L~Ls~C~  813 (1153)
T PLN03210        742 -S-NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE------LPSSIQNLHKLEHLEIENCI  813 (1153)
T ss_pred             -c-cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc------cChhhhCCCCCCEEECCCCC
Confidence             2 225677888877765421110    00000012235788888888754431      11235678899999999998


Q ss_pred             CcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchh
Q 012933          331 KVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMI  410 (453)
Q Consensus       331 ~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l  410 (453)
                      .++.+|..     ..+++|+.|++++|..++.+|..   .++|++|++++ +.++.+|.  ....+++|++|++.+|.++
T Consensus       814 ~L~~LP~~-----~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L  882 (1153)
T PLN03210        814 NLETLPTG-----INLESLESLDLSGCSRLRTFPDI---STNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNL  882 (1153)
T ss_pred             CcCeeCCC-----CCccccCEEECCCCCcccccccc---ccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCc
Confidence            88888754     36889999999999988887754   36888999977 67888775  3567899999999999999


Q ss_pred             HHHHhhccCCccCCCceeccccchhhhhhHHHHHH
Q 012933          411 EQIIQLQVGEEAKDCNVFKELSCETMSKNEDLLSR  445 (453)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~  445 (453)
                      +.+        ......++.|+.+++++|+.|.+-
T Consensus       883 ~~l--------~~~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        883 QRV--------SLNISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             Ccc--------CcccccccCCCeeecCCCcccccc
Confidence            765        334456788888888888877643

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.68  E-value=8.5e-18  Score=161.59  Aligned_cols=56  Identities=16%  Similarity=0.279  Sum_probs=37.3

Q ss_pred             ccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEecc
Q 012933           60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTE  118 (453)
Q Consensus        60 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~  118 (453)
                      .-+.|++++ +++..+... ....+|+|+++++.++ .++.+|.......+++.|++..
T Consensus        79 ~t~~Ldlsn-Nkl~~id~~-~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~  134 (873)
T KOG4194|consen   79 QTQTLDLSN-NKLSHIDFE-FFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRH  134 (873)
T ss_pred             ceeeeeccc-cccccCcHH-HHhcCCcceeeeeccc-hhhhcccccccccceeEEeeec
Confidence            456677776 555555444 2456778888888774 5777777666666677777773

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.68  E-value=6e-19  Score=170.62  Aligned_cols=345  Identities=17%  Similarity=0.204  Sum_probs=222.1

Q ss_pred             cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc--c
Q 012933           23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK--T  100 (453)
Q Consensus        23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~--~  100 (453)
                      ..++++++.|.|.. .++.++|.+.+.        +.+|+.|.+.+ +++..+.-.  ...+|.|+.+.++.+. ++  .
T Consensus        28 v~qMt~~~WLkLnr-t~L~~vPeEL~~--------lqkLEHLs~~H-N~L~~vhGE--Ls~Lp~LRsv~~R~N~-LKnsG   94 (1255)
T KOG0444|consen   28 VEQMTQMTWLKLNR-TKLEQVPEELSR--------LQKLEHLSMAH-NQLISVHGE--LSDLPRLRSVIVRDNN-LKNSG   94 (1255)
T ss_pred             HHHhhheeEEEech-hhhhhChHHHHH--------Hhhhhhhhhhh-hhhHhhhhh--hccchhhHHHhhhccc-cccCC
Confidence            45688999999999 589999998887        89999999998 556655333  6779999999999864 44  6


Q ss_pred             cccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEE
Q 012933          101 FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARL  180 (453)
Q Consensus       101 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L  180 (453)
                      +|..+..+..|..|+++               .+.....|..+...+++-.|+++++. +..+|... +  ..+..|-.|
T Consensus        95 iP~diF~l~dLt~lDLS---------------hNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~l-f--inLtDLLfL  155 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLS---------------HNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSL-F--INLTDLLFL  155 (1255)
T ss_pred             CCchhcccccceeeecc---------------hhhhhhcchhhhhhcCcEEEEcccCc-cccCCchH-H--HhhHhHhhh
Confidence            99999999999999999               66677788888888888899998876 77666544 1  225566677


Q ss_pred             EecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccC
Q 012933          181 VVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIE  260 (453)
Q Consensus       181 ~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~  260 (453)
                      ++++. .+..++| . ...+.+|+.|.+++++-.-.  .+.       ..+.+ ++|+.|++++-..  ...+.|..+-.
T Consensus       156 DLS~N-rLe~LPP-Q-~RRL~~LqtL~Ls~NPL~hf--QLr-------QLPsm-tsL~vLhms~TqR--Tl~N~Ptsld~  220 (1255)
T KOG0444|consen  156 DLSNN-RLEMLPP-Q-IRRLSMLQTLKLSNNPLNHF--QLR-------QLPSM-TSLSVLHMSNTQR--TLDNIPTSLDD  220 (1255)
T ss_pred             ccccc-hhhhcCH-H-HHHHhhhhhhhcCCChhhHH--HHh-------cCccc-hhhhhhhcccccc--hhhcCCCchhh
Confidence            88873 5665543 3 77788899999988643211  111       01112 5666666665321  11234566677


Q ss_pred             CCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCC
Q 012933          261 LPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEND  340 (453)
Q Consensus       261 l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~  340 (453)
                      +.+|..++++. +++...|..   +-.+++|++|++++++.-...       ...+...+|++|.++.+ .++.+|... 
T Consensus       221 l~NL~dvDlS~-N~Lp~vPec---ly~l~~LrrLNLS~N~iteL~-------~~~~~W~~lEtLNlSrN-QLt~LP~av-  287 (1255)
T KOG0444|consen  221 LHNLRDVDLSE-NNLPIVPEC---LYKLRNLRRLNLSGNKITELN-------MTEGEWENLETLNLSRN-QLTVLPDAV-  287 (1255)
T ss_pred             hhhhhhccccc-cCCCcchHH---HhhhhhhheeccCcCceeeee-------ccHHHHhhhhhhccccc-hhccchHHH-
Confidence            78888888864 566666655   566778888888886432211       11234456777777666 466666544 


Q ss_pred             cccccCCCccceeeccCCCcc--ccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhcc
Q 012933          341 ESNKAFANLESLEISECSKLQ--KLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQV  418 (453)
Q Consensus       341 ~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~  418 (453)
                         ..+++|+.|.+.+ ++++  .+|.+++.+.+|+.++.++ ++++-+|.  ....|+.|+.|.+.+..-+ ++     
T Consensus       288 ---cKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPE--glcRC~kL~kL~L~~NrLi-TL-----  354 (1255)
T KOG0444|consen  288 ---CKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPE--GLCRCVKLQKLKLDHNRLI-TL-----  354 (1255)
T ss_pred             ---hhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhc-cccccCch--hhhhhHHHHHhccccccee-ec-----
Confidence               4666666666665 4433  4666666666666666655 55555444  2334455555554332222 11     


Q ss_pred             CCccCCCceeccccchhhhhhHHHH
Q 012933          419 GEEAKDCNVFKELSCETMSKNEDLL  443 (453)
Q Consensus       419 ~~~~~~~~~~~~l~~l~l~~~~~~~  443 (453)
                         +..|--++.|+.|+++.+|+|+
T Consensus       355 ---PeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  355 ---PEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             ---hhhhhhcCCcceeeccCCcCcc
Confidence               2223345666666666666653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.63  E-value=4.3e-17  Score=156.81  Aligned_cols=148  Identities=17%  Similarity=0.249  Sum_probs=79.3

Q ss_pred             cceEEeccccchhhh-hcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc-cCcc
Q 012933           29 LVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS-HGIL  106 (453)
Q Consensus        29 L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~  106 (453)
                      -+.|+++++ ++.++ +..+.+        +++|+++++.+ +.|+.+|..  .....+|+.|++..+. ++.+. ....
T Consensus        80 t~~LdlsnN-kl~~id~~~f~n--------l~nLq~v~l~~-N~Lt~IP~f--~~~sghl~~L~L~~N~-I~sv~se~L~  146 (873)
T KOG4194|consen   80 TQTLDLSNN-KLSHIDFEFFYN--------LPNLQEVNLNK-NELTRIPRF--GHESGHLEKLDLRHNL-ISSVTSEELS  146 (873)
T ss_pred             eeeeecccc-ccccCcHHHHhc--------CCcceeeeecc-chhhhcccc--cccccceeEEeeeccc-cccccHHHHH
Confidence            345777774 56665 333444        67777777776 556666655  3445567777776643 44332 2233


Q ss_pred             CCCCcceEEeccccccccccccCCccchhHHHHHHhhcC-CCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCC
Q 012933          107 STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIG-FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDC  185 (453)
Q Consensus       107 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c  185 (453)
                      .++.||.||++.               +.+..++..-.. -.++++|+++++. +..+..+. +  ..+.+|..|.+++.
T Consensus       147 ~l~alrslDLSr---------------N~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~-F--~~lnsL~tlkLsrN  207 (873)
T KOG4194|consen  147 ALPALRSLDLSR---------------NLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGH-F--DSLNSLLTLKLSRN  207 (873)
T ss_pred             hHhhhhhhhhhh---------------chhhcccCCCCCCCCCceEEeecccc-cccccccc-c--cccchheeeecccC
Confidence            466677777662               223333221111 1456667766664 43333322 2  23556666666653


Q ss_pred             CCccccCchhHHhhcCCCcEEEecc
Q 012933          186 TNMSSAIPANLLRCLNNLQWLEVRN  210 (453)
Q Consensus       186 ~~l~~~~~~~~l~~l~~L~~L~l~~  210 (453)
                       .++.+ |...+..++.|+.|++..
T Consensus       208 -rittL-p~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  208 -RITTL-PQRSFKRLPKLESLDLNR  230 (873)
T ss_pred             -ccccc-CHHHhhhcchhhhhhccc
Confidence             34333 555566666676666654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.57  E-value=2.6e-17  Score=159.36  Aligned_cols=313  Identities=13%  Similarity=0.158  Sum_probs=155.5

Q ss_pred             CcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc
Q 012933           24 GIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH  103 (453)
Q Consensus        24 ~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  103 (453)
                      +.+..|++|.++++ ++..+-.+...        +++||.+.+.+ ++++.--....+.++..|+.|+++.+ +++..|.
T Consensus        52 ~~lqkLEHLs~~HN-~L~~vhGELs~--------Lp~LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~  120 (1255)
T KOG0444|consen   52 SRLQKLEHLSMAHN-QLISVHGELSD--------LPRLRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPT  120 (1255)
T ss_pred             HHHhhhhhhhhhhh-hhHhhhhhhcc--------chhhHHHhhhc-cccccCCCCchhcccccceeeecchh-hhhhcch
Confidence            45666666666664 45555443333        66666666655 33322222222445666666666663 4666666


Q ss_pred             CccCCCCcceEEecccc----------cccc---ccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCC
Q 012933          104 GILSTPKLHKVQVTEKE----------EGEL---HHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALP  170 (453)
Q Consensus       104 ~~~~~~~L~~L~l~~~~----------~l~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~  170 (453)
                      +..+..++-.|+++.+.          ++++   ++++    ++....+|..+..+.+|++|++++++ +...-... +|
T Consensus       121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS----~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQ-LP  194 (1255)
T KOG0444|consen  121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS----NNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQ-LP  194 (1255)
T ss_pred             hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc----cchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhc-Cc
Confidence            66666666666666210          0000   0000    23334444444445555555555544 22111111 11


Q ss_pred             cCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcce
Q 012933          171 VSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKR  250 (453)
Q Consensus       171 ~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~  250 (453)
                        +++.|..|.+++.+..-.-+|.+ +..+.||..++++.+ ++..+|.     +    .- -.++|++|+|++.. ++.
T Consensus       195 --smtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N-~Lp~vPe-----c----ly-~l~~LrrLNLS~N~-ite  259 (1255)
T KOG0444|consen  195 --SMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSEN-NLPIVPE-----C----LY-KLRNLRRLNLSGNK-ITE  259 (1255)
T ss_pred             --cchhhhhhhcccccchhhcCCCc-hhhhhhhhhcccccc-CCCcchH-----H----Hh-hhhhhheeccCcCc-eee
Confidence              23444455555443322222332 444555555555432 2222221     0    00 11556666665532 333


Q ss_pred             eccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCC
Q 012933          251 FCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLH  330 (453)
Q Consensus       251 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~  330 (453)
                      +   ......-.+|++|++++ ++++.+|..   +..++.|+.|...+++- .+    ....+.++++.+|+.+...++ 
T Consensus       260 L---~~~~~~W~~lEtLNlSr-NQLt~LP~a---vcKL~kL~kLy~n~NkL-~F----eGiPSGIGKL~~Levf~aanN-  326 (1255)
T KOG0444|consen  260 L---NMTEGEWENLETLNLSR-NQLTVLPDA---VCKLTKLTKLYANNNKL-TF----EGIPSGIGKLIQLEVFHAANN-  326 (1255)
T ss_pred             e---eccHHHHhhhhhhcccc-chhccchHH---HhhhHHHHHHHhccCcc-cc----cCCccchhhhhhhHHHHhhcc-
Confidence            2   12222334566666655 445555554   55666666666655421 10    011234566777777777666 


Q ss_pred             CcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCccccc
Q 012933          331 KVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLIN  386 (453)
Q Consensus       331 ~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~  386 (453)
                      .++-+|++.    ..++.|+.|.+++ +.+-.+|+.+.-++.|+.|++...+++.-
T Consensus       327 ~LElVPEgl----cRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  327 KLELVPEGL----CRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             ccccCchhh----hhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccC
Confidence            566666554    5677777777766 66777777777777777777777676654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.52  E-value=3.3e-17  Score=151.13  Aligned_cols=351  Identities=19%  Similarity=0.230  Sum_probs=198.8

Q ss_pred             hhhhcccchhhcc-cccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCC
Q 012933            8 FFNIHTHAHTFAY-FQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPS   86 (453)
Q Consensus         8 ~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~   86 (453)
                      .++++ +.....+ .+.+.+..++.|+.++. ++.++|..++.        ..+++.++.++ ..+...+.+  .+.+..
T Consensus        72 vl~~~-~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s--------~~~l~~l~~s~-n~~~el~~~--i~~~~~  138 (565)
T KOG0472|consen   72 VLNVH-DNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGS--------LISLVKLDCSS-NELKELPDS--IGRLLD  138 (565)
T ss_pred             EEEec-cchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhh--------hhhhhhhhccc-cceeecCch--HHHHhh
Confidence            44555 3333333 34677777777777774 67777776666        77888888777 445555554  566777


Q ss_pred             cceEeecCCCCccccccCccCCCCcceEEecccccc------------ccccccCCccchhHHHHHHhhcCCCCccEEEE
Q 012933           87 LERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEG------------ELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQL  154 (453)
Q Consensus        87 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l------------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  154 (453)
                      |+.++-.++ ++..+|.+++++.+|..+++.+.+-.            .+++..    .+..+.+|..+..+.+|+-|++
T Consensus       139 l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~----~N~L~tlP~~lg~l~~L~~LyL  213 (565)
T KOG0472|consen  139 LEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCN----SNLLETLPPELGGLESLELLYL  213 (565)
T ss_pred             hhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccc----hhhhhcCChhhcchhhhHHHHh
Confidence            888877774 57778888888888888777753221            111111    3345567777777888888887


Q ss_pred             eeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCC
Q 012933          155 SYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLF  234 (453)
Q Consensus       155 ~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~  234 (453)
                      ..++ +..+|.   +  ..+..|+++.+... . ..+.|.++..+++++..|+++++ +++++|..-         . .+
T Consensus       214 ~~Nk-i~~lPe---f--~gcs~L~Elh~g~N-~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~---------c-lL  274 (565)
T KOG0472|consen  214 RRNK-IRFLPE---F--PGCSLLKELHVGEN-Q-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEI---------C-LL  274 (565)
T ss_pred             hhcc-cccCCC---C--CccHHHHHHHhccc-H-HHhhHHHHhcccccceeeecccc-ccccCchHH---------H-Hh
Confidence            7765 544442   2  22555666655542 1 22345555556666666666653 444443310         0 11


Q ss_pred             CccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCC----------------------cee--------------
Q 012933          235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDM----------------------ETF--------------  278 (453)
Q Consensus       235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l----------------------~~~--------------  278 (453)
                      .+|++|++++.. ++.+   +...+++ +|+.|.+.|.+--                      ++.              
T Consensus       275 rsL~rLDlSNN~-is~L---p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t  349 (565)
T KOG0472|consen  275 RSLERLDLSNND-ISSL---PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT  349 (565)
T ss_pred             hhhhhhcccCCc-cccC---Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence            344444444321 2222   2333334 4444444333210                      000              


Q ss_pred             -ccCC-cccccCCCcccccccccc--------------------------cccccccccc-----------------ccc
Q 012933          279 -ISNS-VVHVTTDNKEPQKLTSEE--------------------------NFLLAHQVQP-----------------LFD  313 (453)
Q Consensus       279 -~~~~-~~~~~l~~L~~L~l~~~~--------------------------~~~~~~~l~~-----------------~~~  313 (453)
                       +... +-...+.+.+.|++++..                          -.+.+..+..                 ...
T Consensus       350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~  429 (565)
T KOG0472|consen  350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPL  429 (565)
T ss_pred             CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchH
Confidence             0000 001112233333333211                          1011100000                 011


Q ss_pred             ccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCcccc-----------------------CC-CCCC
Q 012933          314 EKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-----------------------VP-PSWH  369 (453)
Q Consensus       314 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----------------------~~-~~~~  369 (453)
                      ++..+++|..|+++++ -+.++|.+.    +.+..||.|+++. +++..+                       +. ++.+
T Consensus       430 ~l~~l~kLt~L~L~NN-~Ln~LP~e~----~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n  503 (565)
T KOG0472|consen  430 ELSQLQKLTFLDLSNN-LLNDLPEEM----GSLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN  503 (565)
T ss_pred             HHHhhhcceeeecccc-hhhhcchhh----hhhhhhheecccc-cccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence            2457889999999998 689999887    5777899999988 344333                       32 2567


Q ss_pred             CCCCCEEecccCcccccccCCCcccccCCcceEEEcccch
Q 012933          370 LENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKM  409 (453)
Q Consensus       370 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~  409 (453)
                      +.+|.+|++.+ +.+..+|+  ..+++++|++|++.+-|-
T Consensus       504 m~nL~tLDL~n-Ndlq~IPp--~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  504 MRNLTTLDLQN-NDLQQIPP--ILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             hhhcceeccCC-CchhhCCh--hhccccceeEEEecCCcc
Confidence            88888999966 78888877  577889999999888773

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.36  E-value=1.8e-15  Score=139.71  Aligned_cols=230  Identities=22%  Similarity=0.237  Sum_probs=127.6

Q ss_pred             CcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc
Q 012933           24 GIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH  103 (453)
Q Consensus        24 ~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  103 (453)
                      ..+..|..|++.+. .+.++|+.++.        +..++.++++. .++..++..  .+..+.|..++++++ .+..+|.
T Consensus        65 ~nL~~l~vl~~~~n-~l~~lp~aig~--------l~~l~~l~vs~-n~ls~lp~~--i~s~~~l~~l~~s~n-~~~el~~  131 (565)
T KOG0472|consen   65 KNLACLTVLNVHDN-KLSQLPAAIGE--------LEALKSLNVSH-NKLSELPEQ--IGSLISLVKLDCSSN-ELKELPD  131 (565)
T ss_pred             hcccceeEEEeccc-hhhhCCHHHHH--------HHHHHHhhccc-chHhhccHH--Hhhhhhhhhhhcccc-ceeecCc
Confidence            34555555666653 45555555554        44555555555 344444444  345556666666553 3555555


Q ss_pred             CccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEec
Q 012933          104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVD  183 (453)
Q Consensus       104 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~  183 (453)
                      +++.+..|..++..               ++.+..++.++..+.++..+.+.++. ++..+...    ..+..|++|+..
T Consensus       132 ~i~~~~~l~dl~~~---------------~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~----i~m~~L~~ld~~  191 (565)
T KOG0472|consen  132 SIGRLLDLEDLDAT---------------NNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENH----IAMKRLKHLDCN  191 (565)
T ss_pred             hHHHHhhhhhhhcc---------------ccccccCchHHHHHHHHHHhhccccc-hhhCCHHH----HHHHHHHhcccc
Confidence            55555555555544               45555666666666666666666554 44433333    224566666554


Q ss_pred             CCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccC-------------CCCCCCCccceeeeccCCCcce
Q 012933          184 DCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKE-------------HRGPLFPKLYGLRLIDLPKLKR  250 (453)
Q Consensus       184 ~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-------------~~~~~~~~L~~L~L~~~~~l~~  250 (453)
                      . +-++.+ |.+ ++.+.+|+.|++.. +++..+|..+|+..+.+             ....-++++..|++++. +++.
T Consensus       192 ~-N~L~tl-P~~-lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke  266 (565)
T KOG0472|consen  192 S-NLLETL-PPE-LGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKE  266 (565)
T ss_pred             h-hhhhcC-Chh-hcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-cccc
Confidence            3 123333 444 56666666666655 24444444333322211             11112267777788775 3555


Q ss_pred             eccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccc
Q 012933          251 FCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSE  299 (453)
Q Consensus       251 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~  299 (453)
                      +   |..++-+++|..|++++ ..++.+|..   ++++ .|+.|.+.++
T Consensus       267 ~---Pde~clLrsL~rLDlSN-N~is~Lp~s---Lgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  267 V---PDEICLLRSLERLDLSN-NDISSLPYS---LGNL-HLKFLALEGN  307 (565)
T ss_pred             C---chHHHHhhhhhhhcccC-CccccCCcc---cccc-eeeehhhcCC
Confidence            4   46788888999999987 556666665   6666 7777777654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.35  E-value=6e-14  Score=142.12  Aligned_cols=225  Identities=19%  Similarity=0.207  Sum_probs=139.2

Q ss_pred             cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (453)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~  253 (453)
                      ..+|++++++.. +++.+ | +++..+.+|+.++...+ .+..++.--         . .-.+|+.|....+. ++.+  
T Consensus       240 p~nl~~~dis~n-~l~~l-p-~wi~~~~nle~l~~n~N-~l~~lp~ri---------~-~~~~L~~l~~~~ne-l~yi--  302 (1081)
T KOG0618|consen  240 PLNLQYLDISHN-NLSNL-P-EWIGACANLEALNANHN-RLVALPLRI---------S-RITSLVSLSAAYNE-LEYI--  302 (1081)
T ss_pred             cccceeeecchh-hhhcc-h-HHHHhcccceEecccch-hHHhhHHHH---------h-hhhhHHHHHhhhhh-hhhC--
Confidence            467888888863 46555 4 67888888888887663 333332100         0 00334444433321 2222  


Q ss_pred             CCCcccCCCCccEEeeecCCCCceeccCC-----------------------cccccCCCcccccccccccccccccccc
Q 012933          254 FTGNIIELPELQHLTIQNCPDMETFISNS-----------------------VVHVTTDNKEPQKLTSEENFLLAHQVQP  310 (453)
Q Consensus       254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-----------------------~~~~~l~~L~~L~l~~~~~~~~~~~l~~  310 (453)
                       +.....+.+|++|++.. .++..+|...                       .--..++.|+.|.+.++       .+..
T Consensus       303 -p~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-------~Ltd  373 (1081)
T KOG0618|consen  303 -PPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-------HLTD  373 (1081)
T ss_pred             -CCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-------cccc
Confidence             12223345555555544 2233333221                       00112334445544443       1111


Q ss_pred             -cccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccC
Q 012933          311 -LFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLT  389 (453)
Q Consensus       311 -~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~  389 (453)
                       +++-+..+++|+.|+++++ ++..+|...+   .+++.|+.|.+++ ++++.+|..+..++.|++|...+ +.+..+|.
T Consensus       374 ~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~---~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe  447 (1081)
T KOG0618|consen  374 SCFPVLVNFKHLKVLHLSYN-RLNSFPASKL---RKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPE  447 (1081)
T ss_pred             cchhhhccccceeeeeeccc-ccccCCHHHH---hchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeechh
Confidence             3455667899999999998 7888888777   8999999999999 89999998888889999998854 77888774


Q ss_pred             CCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhHH
Q 012933          390 FSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNED  441 (453)
Q Consensus       390 ~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~  441 (453)
                         ...++.|+.+|++ |.++..+...+. ..|      |.|++|++++++.
T Consensus       448 ---~~~l~qL~~lDlS-~N~L~~~~l~~~-~p~------p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  448 ---LAQLPQLKVLDLS-CNNLSEVTLPEA-LPS------PNLKYLDLSGNTR  488 (1081)
T ss_pred             ---hhhcCcceEEecc-cchhhhhhhhhh-CCC------cccceeeccCCcc
Confidence               4567999999984 566655533211 112      7899999999884

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.32  E-value=1.7e-14  Score=134.05  Aligned_cols=294  Identities=17%  Similarity=0.177  Sum_probs=159.3

Q ss_pred             ccceeeccccccccccccccccccCCCcceEeecCCCCccc--cccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933           60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT--FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ  137 (453)
Q Consensus        60 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  137 (453)
                      .|+.|.+.||.....-+...+...+|+++.|.+.+|.++++  +-....++++|+++++-.|..++.            .
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~------------~  206 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD------------V  206 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH------------H
Confidence            46777777766655555555566677777777777776663  112223467777777776654322            1


Q ss_pred             HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933          138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV  217 (453)
Q Consensus       138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~  217 (453)
                      .+.....++++|+++++++|+.+..-.... +. .-+.+++.+...||.....-.-..+-....-+..+++..|..+++.
T Consensus       207 ~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~-~~-rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~  284 (483)
T KOG4341|consen  207 SLKYLAEGCRKLKYLNLSWCPQISGNGVQA-LQ-RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE  284 (483)
T ss_pred             HHHHHHHhhhhHHHhhhccCchhhcCcchH-Hh-ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch
Confidence            122234557888888888887665411111 11 1245566676667765532211122233344556666677666654


Q ss_pred             hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccc
Q 012933          218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLT  297 (453)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~  297 (453)
                      ....       ... ....|+.|...+|.++++.+ ......+.++|+.+-+.+|.++++.....  ++.          
T Consensus       285 ~~~~-------i~~-~c~~lq~l~~s~~t~~~d~~-l~aLg~~~~~L~~l~l~~c~~fsd~~ft~--l~r----------  343 (483)
T KOG4341|consen  285 DLWL-------IAC-GCHALQVLCYSSCTDITDEV-LWALGQHCHNLQVLELSGCQQFSDRGFTM--LGR----------  343 (483)
T ss_pred             HHHH-------Hhh-hhhHhhhhcccCCCCCchHH-HHHHhcCCCceEEEeccccchhhhhhhhh--hhc----------
Confidence            3211       011 12667888888887766631 22345567888888888888776655432  111          


Q ss_pred             ccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCcccc-----CCCCCCCCC
Q 012933          298 SEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-----VPPSWHLEN  372 (453)
Q Consensus       298 ~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----~~~~~~l~~  372 (453)
                                         ..+.|+.+++.+|.-..+-.....  ..+++.||.+.+++|..+++.     .....++..
T Consensus       344 -------------------n~~~Le~l~~e~~~~~~d~tL~sl--s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~  402 (483)
T KOG4341|consen  344 -------------------NCPHLERLDLEECGLITDGTLASL--SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEG  402 (483)
T ss_pred             -------------------CChhhhhhcccccceehhhhHhhh--ccCCchhccCChhhhhhhhhhhhhhhhhccccccc
Confidence                               223444444444433222211111  146666666666666655543     223344556


Q ss_pred             CCEEecccCcccccccCCCcccccCCcceEEEcccchh
Q 012933          373 LEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMI  410 (453)
Q Consensus       373 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l  410 (453)
                      |+.+++.+|+.+++-..+ ....+++|+.+++.+|..+
T Consensus       403 l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  403 LEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDV  439 (483)
T ss_pred             cceeeecCCCCchHHHHH-HHhhCcccceeeeechhhh
Confidence            666666666666654332 2334566666666666665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.32  E-value=1.9e-11  Score=127.06  Aligned_cols=257  Identities=18%  Similarity=0.143  Sum_probs=161.2

Q ss_pred             cceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCC
Q 012933           29 LVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILST  108 (453)
Q Consensus        29 L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  108 (453)
                      -..|+++++ .++.+|..+.          ++|+.|.+.+ ++++.++.     ..++|++|++++| +++.+|.   ..
T Consensus       203 ~~~LdLs~~-~LtsLP~~l~----------~~L~~L~L~~-N~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~---lp  261 (788)
T PRK15387        203 NAVLNVGES-GLTTLPDCLP----------AHITTLVIPD-NNLTSLPA-----LPPELRTLEVSGN-QLTSLPV---LP  261 (788)
T ss_pred             CcEEEcCCC-CCCcCCcchh----------cCCCEEEccC-CcCCCCCC-----CCCCCcEEEecCC-ccCcccC---cc
Confidence            456788886 6777776432          3678888887 55666543     2578888888885 6777764   34


Q ss_pred             CCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCc
Q 012933          109 PKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNM  188 (453)
Q Consensus       109 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l  188 (453)
                      ++|+.|+++++               .+..++..   +.+|+.|+++++. +..+|.       .+++|++|+++++ .+
T Consensus       262 ~sL~~L~Ls~N---------------~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~-------~p~~L~~LdLS~N-~L  314 (788)
T PRK15387        262 PGLLELSIFSN---------------PLTHLPAL---PSGLCKLWIFGNQ-LTSLPV-------LPPGLQELSVSDN-QL  314 (788)
T ss_pred             cccceeeccCC---------------chhhhhhc---hhhcCEEECcCCc-cccccc-------cccccceeECCCC-cc
Confidence            67888888743               22333331   3567788887775 554432       2467888888875 45


Q ss_pred             cccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEe
Q 012933          189 SSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLT  268 (453)
Q Consensus       189 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~  268 (453)
                      +.+ |.    ...+|+.|.+++| .+..++.             .+++|++|++.++ .++.++.      ..++|+.|+
T Consensus       315 ~~L-p~----lp~~L~~L~Ls~N-~L~~LP~-------------lp~~Lq~LdLS~N-~Ls~LP~------lp~~L~~L~  368 (788)
T PRK15387        315 ASL-PA----LPSELCKLWAYNN-QLTSLPT-------------LPSGLQELSVSDN-QLASLPT------LPSELYKLW  368 (788)
T ss_pred             ccC-CC----CcccccccccccC-ccccccc-------------cccccceEecCCC-ccCCCCC------CCcccceeh
Confidence            543 21    1245777777664 3444322             2257888888764 4555432      134677777


Q ss_pred             eecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCC
Q 012933          269 IQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFAN  348 (453)
Q Consensus       269 l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~  348 (453)
                      ++++ .+..+|..      ..+|+.|+++++. +.       .++.  ..++|+.|+++++ .++.+|.       .+.+
T Consensus       369 Ls~N-~L~~LP~l------~~~L~~LdLs~N~-Lt-------~LP~--l~s~L~~LdLS~N-~LssIP~-------l~~~  423 (788)
T PRK15387        369 AYNN-RLTSLPAL------PSGLKELIVSGNR-LT-------SLPV--LPSELKELMVSGN-RLTSLPM-------LPSG  423 (788)
T ss_pred             hhcc-ccccCccc------ccccceEEecCCc-cc-------CCCC--cccCCCEEEccCC-cCCCCCc-------chhh
Confidence            7663 45544432      1367888887752 22       0111  2357888888888 5666652       3356


Q ss_pred             ccceeeccCCCccccCCCCCCCCCCCEEecccCccccc
Q 012933          349 LESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLIN  386 (453)
Q Consensus       349 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~  386 (453)
                      |+.|++++ +.++.+|..+..+++|+.|++++ +.+..
T Consensus       424 L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~-N~Ls~  459 (788)
T PRK15387        424 LLSLSVYR-NQLTRLPESLIHLSSETTVNLEG-NPLSE  459 (788)
T ss_pred             hhhhhhcc-CcccccChHHhhccCCCeEECCC-CCCCc
Confidence            78888888 67888888888888999999877 44543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.31  E-value=6.2e-14  Score=130.46  Aligned_cols=91  Identities=25%  Similarity=0.312  Sum_probs=38.0

Q ss_pred             CCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCcccc--CCCCCCCCCCCEEecccCcccccccCC---Ccc
Q 012933          319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL--VPPSWHLENLEALEVSKCHGLINLLTF---STS  393 (453)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~  393 (453)
                      ++|+.+.+..|..+++.....+.  .+.+.|+.+++.+|..+.+-  ..-..+++.|+.+.++.|..+++..+.   ...
T Consensus       320 ~~L~~l~l~~c~~fsd~~ft~l~--rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~  397 (483)
T KOG4341|consen  320 HNLQVLELSGCQQFSDRGFTMLG--RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS  397 (483)
T ss_pred             CceEEEeccccchhhhhhhhhhh--cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence            34444444444443333322211  34555555555554433321  122334455555555555554443111   011


Q ss_pred             cccCCcceEEEcccchhH
Q 012933          394 ESLVNLGRMMIADCKMIE  411 (453)
Q Consensus       394 ~~l~~L~~L~i~~C~~l~  411 (453)
                      .+...|+.+.+.+||.+.
T Consensus       398 c~~~~l~~lEL~n~p~i~  415 (483)
T KOG4341|consen  398 CSLEGLEVLELDNCPLIT  415 (483)
T ss_pred             ccccccceeeecCCCCch
Confidence            223444555555555543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.20  E-value=1.1e-12  Score=133.08  Aligned_cols=128  Identities=19%  Similarity=0.191  Sum_probs=65.5

Q ss_pred             CccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccc
Q 012933          235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDE  314 (453)
Q Consensus       235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~  314 (453)
                      +.|+.|.+.+.. +++-  ....+.++.+||.|++++ +.+..+|...  +.+++.|++|.+++++=-.+       .+.
T Consensus       359 ~~Lq~LylanN~-Ltd~--c~p~l~~~~hLKVLhLsy-NrL~~fpas~--~~kle~LeeL~LSGNkL~~L-------p~t  425 (1081)
T KOG0618|consen  359 AALQELYLANNH-LTDS--CFPVLVNFKHLKVLHLSY-NRLNSFPASK--LRKLEELEELNLSGNKLTTL-------PDT  425 (1081)
T ss_pred             HHHHHHHHhcCc-cccc--chhhhccccceeeeeecc-cccccCCHHH--HhchHHhHHHhcccchhhhh-------hHH
Confidence            566666666543 3321  114566777888888876 4456666554  55666666666666521110       022


Q ss_pred             cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCC-CCCCEEecccCc
Q 012933          315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHL-ENLEALEVSKCH  382 (453)
Q Consensus       315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l-~~L~~L~l~~c~  382 (453)
                      +..++.|++|...++ .+..+| +.    ..++.|+.++++. +.++.+.....-- ++|++|++++..
T Consensus       426 va~~~~L~tL~ahsN-~l~~fP-e~----~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  426 VANLGRLHTLRAHSN-QLLSFP-EL----AQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             HHhhhhhHHHhhcCC-ceeech-hh----hhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCc
Confidence            334455555555444 344444 22    4556666666655 4444322111001 566666665543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.13  E-value=3.7e-10  Score=117.63  Aligned_cols=256  Identities=16%  Similarity=0.118  Sum_probs=171.9

Q ss_pred             ccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHH
Q 012933           60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC  139 (453)
Q Consensus        60 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  139 (453)
                      +-..|+++++ .++.+|..  .  .++|+.|++.++ +++.+|.   ..++|++|+++++ +              +..+
T Consensus       202 ~~~~LdLs~~-~LtsLP~~--l--~~~L~~L~L~~N-~Lt~LP~---lp~~Lk~LdLs~N-~--------------LtsL  257 (788)
T PRK15387        202 GNAVLNVGES-GLTTLPDC--L--PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGN-Q--------------LTSL  257 (788)
T ss_pred             CCcEEEcCCC-CCCcCCcc--h--hcCCCEEEccCC-cCCCCCC---CCCCCcEEEecCC-c--------------cCcc
Confidence            3556777774 67766654  2  257899999885 5777774   3678999999853 2              2222


Q ss_pred             HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhc
Q 012933          140 YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLH  219 (453)
Q Consensus       140 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~  219 (453)
                      +.   ..++|++|+++++. +..++.       .+.+|+.|+++++ +++.+ |.    ..++|+.|+++++ .+..++.
T Consensus       258 P~---lp~sL~~L~Ls~N~-L~~Lp~-------lp~~L~~L~Ls~N-~Lt~L-P~----~p~~L~~LdLS~N-~L~~Lp~  319 (788)
T PRK15387        258 PV---LPPGLLELSIFSNP-LTHLPA-------LPSGLCKLWIFGN-QLTSL-PV----LPPGLQELSVSDN-QLASLPA  319 (788)
T ss_pred             cC---cccccceeeccCCc-hhhhhh-------chhhcCEEECcCC-ccccc-cc----cccccceeECCCC-ccccCCC
Confidence            22   14678888888875 554332       2467889999886 45544 32    2478999999885 5555432


Q ss_pred             ccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccc
Q 012933          220 LEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSE  299 (453)
Q Consensus       220 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~  299 (453)
                                   .++.|+.|.+.++ .++.++.      -.++|+.|+++++ +++.+|..      ..+|+.|+++++
T Consensus       320 -------------lp~~L~~L~Ls~N-~L~~LP~------lp~~Lq~LdLS~N-~Ls~LP~l------p~~L~~L~Ls~N  372 (788)
T PRK15387        320 -------------LPSELCKLWAYNN-QLTSLPT------LPSGLQELSVSDN-QLASLPTL------PSELYKLWAYNN  372 (788)
T ss_pred             -------------CcccccccccccC-ccccccc------cccccceEecCCC-ccCCCCCC------Ccccceehhhcc
Confidence                         2256888888765 3444421      1247999999884 56665542      127788888765


Q ss_pred             ccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecc
Q 012933          300 ENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVS  379 (453)
Q Consensus       300 ~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~  379 (453)
                      . +.       .++.  ..++|+.|+++++ .++.++.       ..++|+.|++++ +.++.+|..   ..+|+.|+++
T Consensus       373 ~-L~-------~LP~--l~~~L~~LdLs~N-~Lt~LP~-------l~s~L~~LdLS~-N~LssIP~l---~~~L~~L~Ls  430 (788)
T PRK15387        373 R-LT-------SLPA--LPSGLKELIVSGN-RLTSLPV-------LPSELKELMVSG-NRLTSLPML---PSGLLSLSVY  430 (788)
T ss_pred             c-cc-------cCcc--cccccceEEecCC-cccCCCC-------cccCCCEEEccC-CcCCCCCcc---hhhhhhhhhc
Confidence            2 22       1122  2358999999998 5666652       346899999999 568888864   3578889997


Q ss_pred             cCcccccccCCCcccccCCcceEEEcccch
Q 012933          380 KCHGLINLLTFSTSESLVNLGRMMIADCKM  409 (453)
Q Consensus       380 ~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~  409 (453)
                      + ++++.+|..  ...+++|+.|++++++-
T Consensus       431 ~-NqLt~LP~s--l~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        431 R-NQLTRLPES--LIHLSSETTVNLEGNPL  457 (788)
T ss_pred             c-CcccccChH--HhhccCCCeEECCCCCC
Confidence            7 778888763  55789999999998873

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.10  E-value=5.4e-11  Score=126.24  Aligned_cols=293  Identities=20%  Similarity=0.271  Sum_probs=148.6

Q ss_pred             cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc
Q 012933           23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS  102 (453)
Q Consensus        23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  102 (453)
                      |..++.|+.|+|++|..+.++|..++.        +-+||+|++++ ..+..+|.+  ...+..|.+|++.....+..+|
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~--------Li~LryL~L~~-t~I~~LP~~--l~~Lk~L~~Lnl~~~~~l~~~~  635 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGE--------LVHLRYLDLSD-TGISHLPSG--LGNLKKLIYLNLEVTGRLESIP  635 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhh--------hhhhhcccccC-CCccccchH--HHHHHhhheecccccccccccc
Confidence            445666677777766666666666665        66677777766 445555555  5566667777766666666554


Q ss_pred             cCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCc----
Q 012933          103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA----  178 (453)
Q Consensus       103 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~----  178 (453)
                      .....+++||+|.+..-.            .........++..+..|+.+.+..... . +-..  +  ...++|.    
T Consensus       636 ~i~~~L~~Lr~L~l~~s~------------~~~~~~~l~el~~Le~L~~ls~~~~s~-~-~~e~--l--~~~~~L~~~~~  697 (889)
T KOG4658|consen  636 GILLELQSLRVLRLPRSA------------LSNDKLLLKELENLEHLENLSITISSV-L-LLED--L--LGMTRLRSLLQ  697 (889)
T ss_pred             chhhhcccccEEEeeccc------------cccchhhHHhhhcccchhhheeecchh-H-hHhh--h--hhhHHHHHHhH
Confidence            444446677777666311            111122223334444444444433221 0 0000  0  1122222    


Q ss_pred             EEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcc
Q 012933          179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNI  258 (453)
Q Consensus       179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~  258 (453)
                      .+.+.+|...+ .  ...+..+.+|+.|.+.+|...+.........    .....|+++..+...+|...+..    .+.
T Consensus       698 ~l~~~~~~~~~-~--~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~----~~~~~f~~l~~~~~~~~~~~r~l----~~~  766 (889)
T KOG4658|consen  698 SLSIEGCSKRT-L--ISSLGSLGNLEELSILDCGISEIVIEWEESL----IVLLCFPNLSKVSILNCHMLRDL----TWL  766 (889)
T ss_pred             hhhhcccccce-e--ecccccccCcceEEEEcCCCchhhccccccc----chhhhHHHHHHHHhhcccccccc----chh
Confidence            22223322221 1  1236677778888887776654432110000    00002466666666677666653    455


Q ss_pred             cCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEE-eecCCCCcceecc
Q 012933          259 IELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWL-ELSGLHKVQHLWK  337 (453)
Q Consensus       259 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L-~l~~~~~l~~l~~  337 (453)
                      ...|+|+.|.+..|..+++....   ...+..++.+                    +-.|.+++.+ .+.+.+.+.++..
T Consensus       767 ~f~~~L~~l~l~~~~~~e~~i~~---~k~~~~l~~~--------------------i~~f~~~~~l~~~~~l~~l~~i~~  823 (889)
T KOG4658|consen  767 LFAPHLTSLSLVSCRLLEDIIPK---LKALLELKEL--------------------ILPFNKLEGLRMLCSLGGLPQLYW  823 (889)
T ss_pred             hccCcccEEEEecccccccCCCH---HHHhhhcccE--------------------EecccccccceeeecCCCCceeEe
Confidence            66778888888777766554322   1111111110                    1134455555 4555555555544


Q ss_pred             cCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccC-cccccccC
Q 012933          338 ENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKC-HGLINLLT  389 (453)
Q Consensus       338 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c-~~l~~l~~  389 (453)
                      ...    ..+.|+.+.+..|+++..+       |.+.++.+.+| ..+...|.
T Consensus       824 ~~l----~~~~l~~~~ve~~p~l~~~-------P~~~~~~i~~~~~~~~~~~~  865 (889)
T KOG4658|consen  824 LPL----SFLKLEELIVEECPKLGKL-------PLLSTLTIVGCEEKLKEYPD  865 (889)
T ss_pred             ccc----CccchhheehhcCcccccC-------ccccccceeccccceeecCC
Confidence            432    3344777777777665544       45555666665 55554443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.07  E-value=1.4e-10  Score=123.19  Aligned_cols=324  Identities=18%  Similarity=0.192  Sum_probs=183.8

Q ss_pred             ccccceEEeccccchhhhhcccccccccccccccccceeecccccc-ccccccccccccCCCcceEeecCCCCccccccC
Q 012933           26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPT-LTSFCLENYTLEFPSLERVSMTHCPNMKTFSHG  104 (453)
Q Consensus        26 ~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  104 (453)
                      ....++..+.+. .+..++....         ++.|++|-+.+... +... ...+...+|.|+.|++++|..+..+|..
T Consensus       522 ~~~~rr~s~~~~-~~~~~~~~~~---------~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~  590 (889)
T KOG4658|consen  522 WNSVRRMSLMNN-KIEHIAGSSE---------NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSS  590 (889)
T ss_pred             hhheeEEEEecc-chhhccCCCC---------CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChH
Confidence            344566666653 4555554322         56788888877332 2222 1223567899999999999999999999


Q ss_pred             ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecC
Q 012933          105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDD  184 (453)
Q Consensus       105 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~  184 (453)
                      ++.+.+||+|++.               .+.+..+|..+.+++.|.+|++..+..+..++...    ..+++|++|.+..
T Consensus       591 I~~Li~LryL~L~---------------~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~----~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  591 IGELVHLRYLDLS---------------DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL----LELQSLRVLRLPR  651 (889)
T ss_pred             Hhhhhhhhccccc---------------CCCccccchHHHHHHhhheeccccccccccccchh----hhcccccEEEeec
Confidence            9999999999999               55677889999999999999999888666654433    4589999999987


Q ss_pred             CCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccc----eeeeccCCCcceeccCCCcccC
Q 012933          185 CTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLY----GLRLIDLPKLKRFCNFTGNIIE  260 (453)
Q Consensus       185 c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~----~L~L~~~~~l~~~~~~~~~~~~  260 (453)
                      .....+......+..+.+|+.+.+..... ..+....+          . ++|.    .+.+.++..-+    .......
T Consensus       652 s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~----------~-~~L~~~~~~l~~~~~~~~~----~~~~~~~  715 (889)
T KOG4658|consen  652 SALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLG----------M-TRLRSLLQSLSIEGCSKRT----LISSLGS  715 (889)
T ss_pred             cccccchhhHHhhhcccchhhheeecchh-HhHhhhhh----------h-HHHHHHhHhhhhcccccce----eeccccc
Confidence            64222222333456666667776654433 11111100          1 2333    22222222222    2356677


Q ss_pred             CCCccEEeeecCCCCceec--cCCccccc-CCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecc
Q 012933          261 LPELQHLTIQNCPDMETFI--SNSVVHVT-TDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWK  337 (453)
Q Consensus       261 l~~L~~L~l~~c~~l~~~~--~~~~~~~~-l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  337 (453)
                      +++|+.|.|.+|.......  ........ ++++..+.+.+|....       .....-..|+|+.|++..|+.++++..
T Consensus       716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r-------~l~~~~f~~~L~~l~l~~~~~~e~~i~  788 (889)
T KOG4658|consen  716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR-------DLTWLLFAPHLTSLSLVSCRLLEDIIP  788 (889)
T ss_pred             ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc-------ccchhhccCcccEEEEecccccccCCC
Confidence            8899999998887643211  11000111 3344555555553322       001112457899999988877766543


Q ss_pred             cCC--c----ccccCCCccce-eeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEccc-ch
Q 012933          338 END--E----SNKAFANLESL-EISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC-KM  409 (453)
Q Consensus       338 ~~~--~----~~~~l~~L~~L-~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C-~~  409 (453)
                      ..-  .    ....+.+++.+ .+.+-.++..+-..-..++.|+.+.+..|+++..+         |.+.++.+.+| ++
T Consensus       789 ~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~---------P~~~~~~i~~~~~~  859 (889)
T KOG4658|consen  789 KLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKL---------PLLSTLTIVGCEEK  859 (889)
T ss_pred             HHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccC---------ccccccceeccccc
Confidence            210  0    00223333333 23332222222111112234666666666665544         55666677776 44


Q ss_pred             hH
Q 012933          410 IE  411 (453)
Q Consensus       410 l~  411 (453)
                      +.
T Consensus       860 ~~  861 (889)
T KOG4658|consen  860 LK  861 (889)
T ss_pred             ee
Confidence            43

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.05  E-value=4.3e-10  Score=117.66  Aligned_cols=72  Identities=11%  Similarity=0.178  Sum_probs=35.1

Q ss_pred             ccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccC
Q 012933           28 SLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILS  107 (453)
Q Consensus        28 ~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  107 (453)
                      +...|++++. .++.+|..+.          ++++.|++++ ++++.++..    .+++|+.|++++| +++.+|..+  
T Consensus       179 ~~~~L~L~~~-~LtsLP~~Ip----------~~L~~L~Ls~-N~LtsLP~~----l~~nL~~L~Ls~N-~LtsLP~~l--  239 (754)
T PRK15370        179 NKTELRLKIL-GLTTIPACIP----------EQITTLILDN-NELKSLPEN----LQGNIKTLYANSN-QLTSIPATL--  239 (754)
T ss_pred             CceEEEeCCC-CcCcCCcccc----------cCCcEEEecC-CCCCcCChh----hccCCCEEECCCC-ccccCChhh--
Confidence            3455666654 4555554321          2456666655 345544433    1245666666654 355554322  


Q ss_pred             CCCcceEEecc
Q 012933          108 TPKLHKVQVTE  118 (453)
Q Consensus       108 ~~~L~~L~l~~  118 (453)
                      .++|+.|++++
T Consensus       240 ~~~L~~L~Ls~  250 (754)
T PRK15370        240 PDTIQEMELSI  250 (754)
T ss_pred             hccccEEECcC
Confidence            23455555553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.87  E-value=5.3e-09  Score=109.53  Aligned_cols=246  Identities=13%  Similarity=0.144  Sum_probs=118.3

Q ss_pred             CcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCccccc
Q 012933           86 SLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWH  165 (453)
Q Consensus        86 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  165 (453)
                      +...|++.+. +++.+|..+  .++|+.|+++++               .+..++..+  +++|++|+++++. +..++.
T Consensus       179 ~~~~L~L~~~-~LtsLP~~I--p~~L~~L~Ls~N---------------~LtsLP~~l--~~nL~~L~Ls~N~-LtsLP~  237 (754)
T PRK15370        179 NKTELRLKIL-GLTTIPACI--PEQITTLILDNN---------------ELKSLPENL--QGNIKTLYANSNQ-LTSIPA  237 (754)
T ss_pred             CceEEEeCCC-CcCcCCccc--ccCCcEEEecCC---------------CCCcCChhh--ccCCCEEECCCCc-cccCCh
Confidence            3455666553 455555432  235666666532               122222222  2456666666554 444333


Q ss_pred             CCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccC
Q 012933          166 GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL  245 (453)
Q Consensus       166 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  245 (453)
                      .      ..++|+.|++++|. ++.+ |.. +  .++|+.|+++++ .+..++.            ..+++|++|++.++
T Consensus       238 ~------l~~~L~~L~Ls~N~-L~~L-P~~-l--~s~L~~L~Ls~N-~L~~LP~------------~l~~sL~~L~Ls~N  293 (754)
T PRK15370        238 T------LPDTIQEMELSINR-ITEL-PER-L--PSALQSLDLFHN-KISCLPE------------NLPEELRYLSVYDN  293 (754)
T ss_pred             h------hhccccEEECcCCc-cCcC-Chh-H--hCCCCEEECcCC-ccCcccc------------ccCCCCcEEECCCC
Confidence            2      13456666666653 3332 332 1  245666666542 4443321            12245666666654


Q ss_pred             CCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEe
Q 012933          246 PKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLE  325 (453)
Q Consensus       246 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~  325 (453)
                       +++.++   ..+  .++|+.|+++++ .+..+|..   +.  ++|+.|++.+|.--.        ++. ...++|+.|+
T Consensus       294 -~Lt~LP---~~l--p~sL~~L~Ls~N-~Lt~LP~~---l~--~sL~~L~Ls~N~Lt~--------LP~-~l~~sL~~L~  352 (754)
T PRK15370        294 -SIRTLP---AHL--PSGITHLNVQSN-SLTALPET---LP--PGLKTLEAGENALTS--------LPA-SLPPELQVLD  352 (754)
T ss_pred             -ccccCc---ccc--hhhHHHHHhcCC-ccccCCcc---cc--ccceeccccCCcccc--------CCh-hhcCcccEEE
Confidence             344331   111  135666666653 23333322   11  256666666552111        011 1125677777


Q ss_pred             ecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCC--CcccccCCcceEE
Q 012933          326 LSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTF--STSESLVNLGRMM  403 (453)
Q Consensus       326 l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~l~~L~~L~  403 (453)
                      +++| .++.++..      -.++|+.|++++| .++.+|..+.  .+|+.|++++ +++..+|..  .....++.+.+++
T Consensus       353 Ls~N-~L~~LP~~------lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~  421 (754)
T PRK15370        353 VSKN-QITVLPET------LPPTITTLDVSRN-ALTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRII  421 (754)
T ss_pred             CCCC-CCCcCChh------hcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEE
Confidence            7766 45555432      2256777777773 4666665432  3566666665 456555431  0112235566666


Q ss_pred             Ecccc
Q 012933          404 IADCK  408 (453)
Q Consensus       404 i~~C~  408 (453)
                      +.+-+
T Consensus       422 L~~Np  426 (754)
T PRK15370        422 VEYNP  426 (754)
T ss_pred             eeCCC
Confidence            66555

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.60  E-value=1.1e-09  Score=90.54  Aligned_cols=84  Identities=19%  Similarity=0.261  Sum_probs=67.8

Q ss_pred             ccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccc
Q 012933           22 QVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF  101 (453)
Q Consensus        22 ~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  101 (453)
                      .+-.+.++++|.++++ ++..+|..+..        +.+|++|++.+ +++++++.+  ...+|+|+.|+++- .++..+
T Consensus        28 gLf~~s~ITrLtLSHN-Kl~~vppnia~--------l~nlevln~~n-nqie~lp~~--issl~klr~lnvgm-nrl~~l   94 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHN-KLTVVPPNIAE--------LKNLEVLNLSN-NQIEELPTS--ISSLPKLRILNVGM-NRLNIL   94 (264)
T ss_pred             cccchhhhhhhhcccC-ceeecCCcHHH--------hhhhhhhhccc-chhhhcChh--hhhchhhhheecch-hhhhcC
Confidence            3344677888999995 78888887766        88999999987 668888777  67889999999876 468888


Q ss_pred             ccCccCCCCcceEEecc
Q 012933          102 SHGILSTPKLHKVQVTE  118 (453)
Q Consensus       102 ~~~~~~~~~L~~L~l~~  118 (453)
                      |.+++++|.|+.|++..
T Consensus        95 prgfgs~p~levldlty  111 (264)
T KOG0617|consen   95 PRGFGSFPALEVLDLTY  111 (264)
T ss_pred             ccccCCCchhhhhhccc
Confidence            89999999998888884

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.58  E-value=6.8e-09  Score=99.50  Aligned_cols=39  Identities=26%  Similarity=0.065  Sum_probs=23.0

Q ss_pred             cCCCcCEEeecCCCCcceecccCCc-ccccC-CCccceeecc
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDE-SNKAF-ANLESLEISE  356 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~-~~~~l-~~L~~L~l~~  356 (453)
                      .+++|++++++++ .+++.+...++ +.... +.|++++|.+
T Consensus       276 ~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (319)
T cd00116         276 EKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKD  316 (319)
T ss_pred             cCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence            4578888888887 45543222111 11334 6788887766

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.58  E-value=4.3e-09  Score=100.90  Aligned_cols=12  Identities=25%  Similarity=0.263  Sum_probs=6.5

Q ss_pred             CCCcCEEeecCC
Q 012933          318 FPRLRWLELSGL  329 (453)
Q Consensus       318 l~~L~~L~l~~~  329 (453)
                      +++|++|++++|
T Consensus       220 ~~~L~~L~ls~n  231 (319)
T cd00116         220 LKSLEVLNLGDN  231 (319)
T ss_pred             cCCCCEEecCCC
Confidence            445555555555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1.7e-08  Score=95.19  Aligned_cols=216  Identities=15%  Similarity=0.175  Sum_probs=140.1

Q ss_pred             CcccccceEEeccccchhhhhcccccccccccccccccceeecccccccccccc-ccccccCCCcceEeecCCCCccccc
Q 012933           24 GIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCL-ENYTLEFPSLERVSMTHCPNMKTFS  102 (453)
Q Consensus        24 ~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~  102 (453)
                      +++..|+...|.+| .+...+.+      +....|++++.|+++. +-+..|.. ......+|+|+.|+++.+. +..+.
T Consensus       118 sn~kkL~~IsLdn~-~V~~~~~~------~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~  188 (505)
T KOG3207|consen  118 SNLKKLREISLDNY-RVEDAGIE------EYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFI  188 (505)
T ss_pred             hhHHhhhheeecCc-cccccchh------hhhhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhccccccc-ccCCc
Confidence            55788999999987 56665543      1455699999999998 33444432 2456789999999999964 55332


Q ss_pred             cC--ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEE
Q 012933          103 HG--ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARL  180 (453)
Q Consensus       103 ~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L  180 (453)
                      ..  ...++.|+.|.+++|             .-...++-..+..+|+|+.|.+..+..+....    .+...+..|++|
T Consensus       189 ~s~~~~~l~~lK~L~l~~C-------------Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~----~~~~i~~~L~~L  251 (505)
T KOG3207|consen  189 SSNTTLLLSHLKQLVLNSC-------------GLSWKDVQWILLTFPSLEVLYLEANEIILIKA----TSTKILQTLQEL  251 (505)
T ss_pred             cccchhhhhhhheEEeccC-------------CCCHHHHHHHHHhCCcHHHhhhhcccccceec----chhhhhhHHhhc
Confidence            22  224788999999987             33456666677779999999998875222111    222457889999


Q ss_pred             EecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccC
Q 012933          181 VVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIE  260 (453)
Q Consensus       181 ~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~  260 (453)
                      ++++.+.+. ..-......++.|..|.++.+ .+.++...+.   ...-....|++|++|.+...+ +.+ |..-..+..
T Consensus       252 dLs~N~li~-~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~---~s~~kt~~f~kL~~L~i~~N~-I~~-w~sl~~l~~  324 (505)
T KOG3207|consen  252 DLSNNNLID-FDQGYKVGTLPGLNQLNLSST-GIASIAEPDV---ESLDKTHTFPKLEYLNISENN-IRD-WRSLNHLRT  324 (505)
T ss_pred             cccCCcccc-cccccccccccchhhhhcccc-CcchhcCCCc---cchhhhcccccceeeecccCc-ccc-ccccchhhc
Confidence            999976443 333345778889998888875 3444321110   000111246899999887654 333 333356667


Q ss_pred             CCCccEEeeecC
Q 012933          261 LPELQHLTIQNC  272 (453)
Q Consensus       261 l~~L~~L~l~~c  272 (453)
                      +++|+.|.+...
T Consensus       325 l~nlk~l~~~~n  336 (505)
T KOG3207|consen  325 LENLKHLRITLN  336 (505)
T ss_pred             cchhhhhhcccc
Confidence            778888876553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=4.3e-08  Score=92.55  Aligned_cols=215  Identities=14%  Similarity=0.145  Sum_probs=137.3

Q ss_pred             HHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCcccc-CchhHHhhcCCCcEEEeccCccchhh
Q 012933          139 CYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSA-IPANLLRCLNNLQWLEVRNCDSIEEV  217 (453)
Q Consensus       139 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~-~~~~~l~~l~~L~~L~l~~~~~l~~~  217 (453)
                      +-..-..+.+|+...+.+++ +....... . ...||+++.|+++..- +... .-..+...+++|+.|+++.+.-....
T Consensus       113 i~akQsn~kkL~~IsLdn~~-V~~~~~~~-~-~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~  188 (505)
T KOG3207|consen  113 IAAKQSNLKKLREISLDNYR-VEDAGIEE-Y-SKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFI  188 (505)
T ss_pred             HHHHhhhHHhhhheeecCcc-ccccchhh-h-hhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCc
Confidence            33344567788888888876 44333211 1 1569999999999742 1111 13346788999999999885322211


Q ss_pred             hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccc
Q 012933          218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLT  297 (453)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~  297 (453)
                       ..        .....+++|++|.+..|.- .. .........+|+|+.|++.+...+......   ..-+..|++|+++
T Consensus       189 -~s--------~~~~~l~~lK~L~l~~CGl-s~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  189 -SS--------NTTLLLSHLKQLVLNSCGL-SW-KDVQWILLTFPSLEVLYLEANEIILIKATS---TKILQTLQELDLS  254 (505)
T ss_pred             -cc--------cchhhhhhhheEEeccCCC-CH-HHHHHHHHhCCcHHHhhhhcccccceecch---hhhhhHHhhcccc
Confidence             10        1111458999999999962 21 112234567999999999987543332222   3335589999999


Q ss_pred             ccccccccccccccccccccCCCcCEEeecCCCCcceeccc---CCcccccCCCccceeeccCCCccccCC--CCCCCCC
Q 012933          298 SEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKE---NDESNKAFANLESLEISECSKLQKLVP--PSWHLEN  372 (453)
Q Consensus       298 ~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~---~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~  372 (453)
                      ++..+.++.     +...+.||.|+.|.+++| .+.++..-   .......+++|++|.+.. +.+.+++.  .+..+++
T Consensus       255 ~N~li~~~~-----~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~n  327 (505)
T KOG3207|consen  255 NNNLIDFDQ-----GYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLEN  327 (505)
T ss_pred             CCccccccc-----ccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccch
Confidence            986655221     234568999999999988 55554321   111236899999999999 66655554  4566788


Q ss_pred             CCEEec
Q 012933          373 LEALEV  378 (453)
Q Consensus       373 L~~L~l  378 (453)
                      |++|.+
T Consensus       328 lk~l~~  333 (505)
T KOG3207|consen  328 LKHLRI  333 (505)
T ss_pred             hhhhhc
Confidence            888876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.44  E-value=2.4e-08  Score=93.01  Aligned_cols=84  Identities=20%  Similarity=0.256  Sum_probs=70.2

Q ss_pred             cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcc
Q 012933          315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTS  393 (453)
Q Consensus       315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~  393 (453)
                      +..+|+|+.|+++++ +++.+-...|   ....++++|.+.. ++++.+... +..+..|++|++.+ ++++.+.. +.+
T Consensus       270 f~~L~~L~~lnlsnN-~i~~i~~~aF---e~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~-~aF  342 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNN-KITRIEDGAF---EGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAP-GAF  342 (498)
T ss_pred             HhhcccceEeccCCC-ccchhhhhhh---cchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEec-ccc
Confidence            347899999999998 7999988888   7899999999999 788887764 67899999999987 78888755 356


Q ss_pred             cccCCcceEEEc
Q 012933          394 ESLVNLGRMMIA  405 (453)
Q Consensus       394 ~~l~~L~~L~i~  405 (453)
                      ..+.+|.+|.+-
T Consensus       343 ~~~~~l~~l~l~  354 (498)
T KOG4237|consen  343 QTLFSLSTLNLL  354 (498)
T ss_pred             cccceeeeeehc
Confidence            677888888875

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.39  E-value=9.2e-09  Score=85.11  Aligned_cols=137  Identities=16%  Similarity=0.211  Sum_probs=110.3

Q ss_pred             ccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc--
Q 012933           22 QVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK--   99 (453)
Q Consensus        22 ~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~--   99 (453)
                      ..+.+.+|+.|++.++ +++++|..+..        +++|+.|++. ++.+.-.+.+  .+.||.|+.|+++++. +.  
T Consensus        51 nia~l~nlevln~~nn-qie~lp~~iss--------l~klr~lnvg-mnrl~~lprg--fgs~p~levldltynn-l~e~  117 (264)
T KOG0617|consen   51 NIAELKNLEVLNLSNN-QIEELPTSISS--------LPKLRILNVG-MNRLNILPRG--FGSFPALEVLDLTYNN-LNEN  117 (264)
T ss_pred             cHHHhhhhhhhhcccc-hhhhcChhhhh--------chhhhheecc-hhhhhcCccc--cCCCchhhhhhccccc-cccc
Confidence            3677999999999985 89999986555        9999999986 5777777777  7889999999999965 43  


Q ss_pred             ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcE
Q 012933          100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR  179 (453)
Q Consensus       100 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~  179 (453)
                      ++|..+..+..|+.|.++               .+.+.-+|..+..+++|+.|.+.+++ +-.+|...    +.+..|++
T Consensus       118 ~lpgnff~m~tlralyl~---------------dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkei----g~lt~lre  177 (264)
T KOG0617|consen  118 SLPGNFFYMTTLRALYLG---------------DNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEI----GDLTRLRE  177 (264)
T ss_pred             cCCcchhHHHHHHHHHhc---------------CCCcccCChhhhhhcceeEEeeccCc-hhhCcHHH----HHHHHHHH
Confidence            788888888999999998               45566778888889999999999887 55556555    56889999


Q ss_pred             EEecCCCCccccC
Q 012933          180 LVVDDCTNMSSAI  192 (453)
Q Consensus       180 L~l~~c~~l~~~~  192 (453)
                      |.|.|. .++-++
T Consensus       178 lhiqgn-rl~vlp  189 (264)
T KOG0617|consen  178 LHIQGN-RLTVLP  189 (264)
T ss_pred             Hhcccc-eeeecC
Confidence            999984 455443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=1.2e-08  Score=91.68  Aligned_cols=63  Identities=21%  Similarity=0.154  Sum_probs=34.6

Q ss_pred             CCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCC
Q 012933          288 TDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECS  358 (453)
Q Consensus       288 l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~  358 (453)
                      +++|.+|+++++..+..     ..+.++..|+.|++|.++.|..+   +.+.+-.....|+|.+|++.+|-
T Consensus       312 cp~l~~LDLSD~v~l~~-----~~~~~~~kf~~L~~lSlsRCY~i---~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKN-----DCFQEFFKFNYLQHLSLSRCYDI---IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             CCceeeeccccccccCc-----hHHHHHHhcchheeeehhhhcCC---ChHHeeeeccCcceEEEEecccc
Confidence            34555555555433330     12234457778888888777533   22222122667778888887764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.28  E-value=1.9e-07  Score=87.11  Aligned_cols=86  Identities=14%  Similarity=0.168  Sum_probs=47.6

Q ss_pred             ccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecc
Q 012933          258 IIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWK  337 (453)
Q Consensus       258 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  337 (453)
                      +..+|+|++|++++ ++++.+...+  +.....+++|.+..++--.+-+.      -+..+..|+.|+++++ .++.+..
T Consensus       270 f~~L~~L~~lnlsn-N~i~~i~~~a--Fe~~a~l~eL~L~~N~l~~v~~~------~f~~ls~L~tL~L~~N-~it~~~~  339 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSN-NKITRIEDGA--FEGAAELQELYLTRNKLEFVSSG------MFQGLSGLKTLSLYDN-QITTVAP  339 (498)
T ss_pred             HhhcccceEeccCC-Cccchhhhhh--hcchhhhhhhhcCcchHHHHHHH------hhhccccceeeeecCC-eeEEEec
Confidence            55667777777766 3445444444  55556666666665422111000      0123456666777776 5666666


Q ss_pred             cCCcccccCCCccceeecc
Q 012933          338 ENDESNKAFANLESLEISE  356 (453)
Q Consensus       338 ~~~~~~~~l~~L~~L~l~~  356 (453)
                      +.|   ..+.+|.+|.+-.
T Consensus       340 ~aF---~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  340 GAF---QTLFSLSTLNLLS  355 (498)
T ss_pred             ccc---cccceeeeeehcc
Confidence            666   5666666666554

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.22  E-value=7e-06  Score=79.13  Aligned_cols=60  Identities=22%  Similarity=0.417  Sum_probs=34.1

Q ss_pred             cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCccee
Q 012933          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF  251 (453)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~  251 (453)
                      ++++++|++++| .++.+ | .   -.++|+.|.+++|..++.++.            ..+++|++|.+.+|..+..+
T Consensus        51 ~~~l~~L~Is~c-~L~sL-P-~---LP~sLtsL~Lsnc~nLtsLP~------------~LP~nLe~L~Ls~Cs~L~sL  110 (426)
T PRK15386         51 ARASGRLYIKDC-DIESL-P-V---LPNELTEITIENCNNLTTLPG------------SIPEGLEKLTVCHCPEISGL  110 (426)
T ss_pred             hcCCCEEEeCCC-CCccc-C-C---CCCCCcEEEccCCCCcccCCc------------hhhhhhhheEccCccccccc
Confidence            566777777776 45444 2 1   123577777777666655432            12256677777666655543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.14  E-value=4.3e-06  Score=58.60  Aligned_cols=58  Identities=31%  Similarity=0.447  Sum_probs=41.8

Q ss_pred             CCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEecccC
Q 012933          319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKC  381 (453)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c  381 (453)
                      |+|++|++++| +++.++.+.|   ..+++|++|++++ +.++.++. .+.++++|++|+++++
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f---~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSF---SNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTT---TTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHHH---cCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence            56777777777 6777777777   6777777777775 56666665 4567777777777664

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.04  E-value=3.4e-07  Score=92.94  Aligned_cols=41  Identities=22%  Similarity=0.347  Sum_probs=23.5

Q ss_pred             CCEEecccCcccccccCCCcccccCCcceEEEcccchhHHH
Q 012933          373 LEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQI  413 (453)
Q Consensus       373 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~  413 (453)
                      ++.|.+..|...++-........+.+++.+++.+|+.+...
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~  443 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK  443 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence            67777777666655433211111556677777777766444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=2.9e-07  Score=82.90  Aligned_cols=165  Identities=21%  Similarity=0.161  Sum_probs=87.7

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeecCCCCccccc--cCccCCCCcceEEeccccccccccccCCccchh
Q 012933           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS--HGILSTPKLHKVQVTEKEEGELHHWEGNKLNST  135 (453)
Q Consensus        58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  135 (453)
                      |.+|+.|.+++.. +.+-.. ....+=.+|++|+++.|.+++...  .-+.++..|..|+++.|--.          ...
T Consensus       209 C~kLk~lSlEg~~-LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~----------~~~  276 (419)
T KOG2120|consen  209 CSKLKNLSLEGLR-LDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF----------TEK  276 (419)
T ss_pred             HHhhhhccccccc-cCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc----------chh
Confidence            6667777666622 222111 113344667777777777666322  22345666777777654210          111


Q ss_pred             HHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccch
Q 012933          136 IQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIE  215 (453)
Q Consensus       136 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~  215 (453)
                      +..+...+  -++|..|+++++...-...... .-...+|+|.+|++++|..++.. -..++.+++.|++|.++.|-.+.
T Consensus       277 Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~  352 (419)
T KOG2120|consen  277 VTVAVAHI--SETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDII  352 (419)
T ss_pred             hhHHHhhh--chhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCC
Confidence            22222222  1556677777765222111111 11156788888888888777664 33346677888888888875543


Q ss_pred             hhhcccccccccCCCCCCCCccceeeeccCCC
Q 012933          216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPK  247 (453)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  247 (453)
                      .--.++        .... |+|.+|+..+|-.
T Consensus       353 p~~~~~--------l~s~-psl~yLdv~g~vs  375 (419)
T KOG2120|consen  353 PETLLE--------LNSK-PSLVYLDVFGCVS  375 (419)
T ss_pred             hHHeee--------eccC-cceEEEEeccccC
Confidence            221111        0112 7888888887743

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.99  E-value=6.9e-07  Score=90.74  Aligned_cols=121  Identities=19%  Similarity=0.226  Sum_probs=63.9

Q ss_pred             CCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCC-CCccccC--chhHHhhcCCCcEEEeccCccchhhhcccc
Q 012933          146 FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDC-TNMSSAI--PANLLRCLNNLQWLEVRNCDSIEEVLHLEE  222 (453)
Q Consensus       146 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c-~~l~~~~--~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  222 (453)
                      ++.|+.+.+.++..+.+.+... +. ..+++|++|++++| .......  .......+++|+.++++.|..+++..-   
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l---  261 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDA-LA-LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL---  261 (482)
T ss_pred             CchhhHhhhcccccCChhhHHH-HH-hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH---
Confidence            5677777777766555422111 11 34677777777763 2211111  122345566777777777665554321   


Q ss_pred             cccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCce
Q 012933          223 QNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMET  277 (453)
Q Consensus       223 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~  277 (453)
                       ..+   ...+ ++|++|.+.+|..+++. ........+++|++|++++|..+++
T Consensus       262 -~~l---~~~c-~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~~d  310 (482)
T KOG1947|consen  262 -SAL---ASRC-PNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGLTD  310 (482)
T ss_pred             -HHH---HhhC-CCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccchH
Confidence             100   0112 67777777777665442 1112345577777777777776643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.99  E-value=3.9e-06  Score=75.87  Aligned_cols=126  Identities=20%  Similarity=0.195  Sum_probs=82.6

Q ss_pred             Ccccccccccccccccccccccccc-cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCC
Q 012933          290 NKEPQKLTSEENFLLAHQVQPLFDE-KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSW  368 (453)
Q Consensus       290 ~L~~L~l~~~~~~~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~  368 (453)
                      .|++++++.+..-        .+++ ....|.++.|+++.+ .+..+..  +   ..+++|+.|++++ +.++.+..+-.
T Consensus       285 ~LtelDLS~N~I~--------~iDESvKL~Pkir~L~lS~N-~i~~v~n--L---a~L~~L~~LDLS~-N~Ls~~~Gwh~  349 (490)
T KOG1259|consen  285 ELTELDLSGNLIT--------QIDESVKLAPKLRRLILSQN-RIRTVQN--L---AELPQLQLLDLSG-NLLAECVGWHL  349 (490)
T ss_pred             hhhhccccccchh--------hhhhhhhhccceeEEecccc-ceeeehh--h---hhcccceEeeccc-chhHhhhhhHh
Confidence            5666666654221        2222 234578888888777 4444432  2   6778888888887 66666665555


Q ss_pred             CCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhHH
Q 012933          369 HLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNED  441 (453)
Q Consensus       369 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~  441 (453)
                      .+-|.++|.+++ +.++++.   ..+.+=+|..||+++.. |+      +-++...++.+|+|+++.+.++|-
T Consensus       350 KLGNIKtL~La~-N~iE~LS---GL~KLYSLvnLDl~~N~-Ie------~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  350 KLGNIKTLKLAQ-NKIETLS---GLRKLYSLVNLDLSSNQ-IE------ELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhcCEeeeehhh-hhHhhhh---hhHhhhhheeccccccc-hh------hHHHhcccccccHHHHHhhcCCCc
Confidence            667778888876 6677663   34556677777776643 21      224567899999999999999885

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.96  E-value=2.7e-06  Score=72.94  Aligned_cols=87  Identities=24%  Similarity=0.298  Sum_probs=29.9

Q ss_pred             ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC--CCCCCCCCCEEecccCcccccccCC--C
Q 012933          316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP--PSWHLENLEALEVSKCHGLINLLTF--S  391 (453)
Q Consensus       316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~~--~  391 (453)
                      ..+++|++|+++++ .++++.....   .++|+|++|.+++ +++.++..  ....+++|+.|.+.+.| +.+.+..  .
T Consensus        61 ~~L~~L~~L~L~~N-~I~~i~~~l~---~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~  134 (175)
T PF14580_consen   61 PGLPRLKTLDLSNN-RISSISEGLD---KNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLF  134 (175)
T ss_dssp             ---TT--EEE--SS----S-CHHHH---HH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHH
T ss_pred             cChhhhhhcccCCC-CCCccccchH---HhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHH
Confidence            34566666666666 5555543211   3466666666666 55555433  23456666666666533 2222111  1


Q ss_pred             cccccCCcceEEEcccc
Q 012933          392 TSESLVNLGRMMIADCK  408 (453)
Q Consensus       392 ~~~~l~~L~~L~i~~C~  408 (453)
                      +...+|+|+.||-....
T Consensus       135 vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen  135 VIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             HHHH-TT-SEETTEETT
T ss_pred             HHHHcChhheeCCEEcc
Confidence            23355666666654433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.94  E-value=5.6e-06  Score=71.05  Aligned_cols=107  Identities=18%  Similarity=0.219  Sum_probs=50.8

Q ss_pred             cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCC-CCCCCCCEEecccCcccccccCCCcccc
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPS-WHLENLEALEVSKCHGLINLLTFSTSES  395 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~  395 (453)
                      .+.+|+.|++++| .++++.  .+   ..++.|+.|++++ +.++++...+ ..+|+|++|.+++ +++.++..-.....
T Consensus        40 ~l~~L~~L~Ls~N-~I~~l~--~l---~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~  111 (175)
T PF14580_consen   40 TLDKLEVLDLSNN-QITKLE--GL---PGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSS  111 (175)
T ss_dssp             T-TT--EEE-TTS---S--T--T-------TT--EEE--S-S---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG
T ss_pred             hhcCCCEEECCCC-CCcccc--Cc---cChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHc
Confidence            4679999999998 677765  34   6899999999999 8898886544 3689999999977 78888755445567


Q ss_pred             cCCcceEEEcccchhHHHHhhccCCcc--CCCceeccccchhhhh
Q 012933          396 LVNLGRMMIADCKMIEQIIQLQVGEEA--KDCNVFKELSCETMSK  438 (453)
Q Consensus       396 l~~L~~L~i~~C~~l~~~~~~~~~~~~--~~~~~~~~l~~l~l~~  438 (453)
                      +++|+.|++.+.|--++       .++  .-+..+|+|+.|+-..
T Consensus       112 l~~L~~L~L~~NPv~~~-------~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen  112 LPKLRVLSLEGNPVCEK-------KNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -TT--EEE-TT-GGGGS-------TTHHHHHHHH-TT-SEETTEE
T ss_pred             CCCcceeeccCCcccch-------hhHHHHHHHHcChhheeCCEE
Confidence            89999999999884311       111  2234678887776544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.83  E-value=2.8e-05  Score=54.43  Aligned_cols=59  Identities=32%  Similarity=0.437  Sum_probs=51.0

Q ss_pred             CCccceeeccCCCccccCC-CCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933          347 ANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       347 ~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                      |+|++|++++| .++.+|. .+..+++|++|++++ ++++.++.. .+..+++|++|++++++
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~-~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPD-AFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETT-TTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHH-HHcCCCCCCEEeCcCCc
Confidence            68999999995 8999986 578899999999985 789998774 56789999999999875

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.75  E-value=1.4e-05  Score=83.42  Aligned_cols=158  Identities=16%  Similarity=0.217  Sum_probs=91.9

Q ss_pred             ccccceEEeccccch-hhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccC
Q 012933           26 PSSLVNLNVSRCDKI-EEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHG  104 (453)
Q Consensus        26 ~~~L~~L~L~~c~~l-~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  104 (453)
                      -.+|++|+++|-..+ +.+|..++.       .||+|+.|.+.+- .+..-........||+|..|||+++ +++.+ .+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~-------~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~G  190 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGT-------MLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNL-SG  190 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhh-------hCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCc-HH
Confidence            467888888885443 345555443       4888888888872 2322223344567888888888886 46666 67


Q ss_pred             ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCC-C-CcCccCCCcEEEe
Q 012933          105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQA-L-PVSFFNNLARLVV  182 (453)
Q Consensus       105 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-l-~~~~l~~L~~L~l  182 (453)
                      ++.+.+|+.|.+.+.+-             ....-...+..+++|+.|+++.-.....--.... + ....+|+||.|+.
T Consensus       191 IS~LknLq~L~mrnLe~-------------e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc  257 (699)
T KOG3665|consen  191 ISRLKNLQVLSMRNLEF-------------ESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC  257 (699)
T ss_pred             HhccccHHHHhccCCCC-------------CchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEec
Confidence            78888888888885321             1112223455678888888887654332100000 0 1133788888888


Q ss_pred             cCCCCccccCchhHHhhcCCCcEEE
Q 012933          183 DDCTNMSSAIPANLLRCLNNLQWLE  207 (453)
Q Consensus       183 ~~c~~l~~~~~~~~l~~l~~L~~L~  207 (453)
                      ++.. +....-...+..-++|+.+.
T Consensus       258 SgTd-i~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  258 SGTD-INEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             CCcc-hhHHHHHHHHHhCccHhhhh
Confidence            8753 33222333334444444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=0.00014  Score=70.23  Aligned_cols=165  Identities=16%  Similarity=0.237  Sum_probs=106.3

Q ss_pred             HhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCc
Q 012933          197 LRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDME  276 (453)
Q Consensus       197 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~  276 (453)
                      +..+.+++.|++++| .++.++.             .+++|++|.+.+|..++.++   ..+  .++|+.|.+++|.++.
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~-------------LP~sLtsL~Lsnc~nLtsLP---~~L--P~nLe~L~Ls~Cs~L~  108 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV-------------LPNELTEITIENCNNLTTLP---GSI--PEGLEKLTVCHCPEIS  108 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC-------------CCCCCcEEEccCCCCcccCC---chh--hhhhhheEccCccccc
Confidence            445789999999998 6776642             33689999999999987763   222  3599999999998887


Q ss_pred             eeccCCcccccCCCcccccccccccccccccccccccccccC-CCcCEEeecCCCCcceecccCCcccccCCCccceeec
Q 012933          277 TFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSF-PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEIS  355 (453)
Q Consensus       277 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~  355 (453)
                      .+|.         +|+.|++..... .          .+..+ ++|+.|.+.+...........    .-.++|+.|.+.
T Consensus       109 sLP~---------sLe~L~L~~n~~-~----------~L~~LPssLk~L~I~~~n~~~~~~lp~----~LPsSLk~L~Is  164 (426)
T PRK15386        109 GLPE---------SVRSLEIKGSAT-D----------SIKNVPNGLTSLSINSYNPENQARIDN----LISPSLKTLSLT  164 (426)
T ss_pred             cccc---------ccceEEeCCCCC-c----------ccccCcchHhheecccccccccccccc----ccCCcccEEEec
Confidence            6553         577777754311 1          11223 578999886543221111111    234789999999


Q ss_pred             cCCCccccCCCCCCCCCCCEEecccCccc-ccccCCCcccccCCcceEEEcccchhH
Q 012933          356 ECSKLQKLVPPSWHLENLEALEVSKCHGL-INLLTFSTSESLVNLGRMMIADCKMIE  411 (453)
Q Consensus       356 ~c~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~~~l~~L~~L~i~~C~~l~  411 (453)
                      +|..+ .+|..+  -.+|+.|.+..+... ..++...++   +++ .|++.+|.++.
T Consensus       165 ~c~~i-~LP~~L--P~SLk~L~ls~n~~~sLeI~~~sLP---~nl-~L~f~n~lkL~  214 (426)
T PRK15386        165 GCSNI-ILPEKL--PESLQSITLHIEQKTTWNISFEGFP---DGL-DIDLQNSVLLS  214 (426)
T ss_pred             CCCcc-cCcccc--cccCcEEEecccccccccCcccccc---ccc-EechhhhcccC
Confidence            98855 344433  268999998663211 122332344   455 88888887663

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.31  E-value=3.4e-05  Score=80.54  Aligned_cols=109  Identities=17%  Similarity=0.216  Sum_probs=60.0

Q ss_pred             CCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccc
Q 012933          147 RDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNAD  226 (453)
Q Consensus       147 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  226 (453)
                      .+|++|++++......-|... +. ..+|.|++|.+.|-. +..........+++||..||++++ .+..+.+       
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~k-ig-~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~G-------  190 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKK-IG-TMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGT-NISNLSG-------  190 (699)
T ss_pred             HhhhhcCccccchhhccHHHH-Hh-hhCcccceEEecCce-ecchhHHHHhhccCccceeecCCC-CccCcHH-------
Confidence            567778877765555555433 22 357788888877732 222223344667777788877774 3333321       


Q ss_pred             cCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecC
Q 012933          227 KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNC  272 (453)
Q Consensus       227 ~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c  272 (453)
                         +..+ .+|+.|.+++++--..  ..-..+.++.+|+.|+++.-
T Consensus       191 ---IS~L-knLq~L~mrnLe~e~~--~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  191 ---ISRL-KNLQVLSMRNLEFESY--QDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             ---Hhcc-ccHHHHhccCCCCCch--hhHHHHhcccCCCeeecccc
Confidence               1112 6666666666542211  01124556667777777653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.12  E-value=0.00013  Score=66.24  Aligned_cols=115  Identities=22%  Similarity=0.226  Sum_probs=77.7

Q ss_pred             hhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCcc
Q 012933          134 STIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDS  213 (453)
Q Consensus       134 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~  213 (453)
                      +.+..+..++.-.|.++.|+++.+. +..+-.   +  ..+++|++|++++. .++..  .++-..+.|++.|.++++ .
T Consensus       294 N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n---L--a~L~~L~~LDLS~N-~Ls~~--~Gwh~KLGNIKtL~La~N-~  363 (490)
T KOG1259|consen  294 NLITQIDESVKLAPKLRRLILSQNR-IRTVQN---L--AELPQLQLLDLSGN-LLAEC--VGWHLKLGNIKTLKLAQN-K  363 (490)
T ss_pred             cchhhhhhhhhhccceeEEeccccc-eeeehh---h--hhcccceEeecccc-hhHhh--hhhHhhhcCEeeeehhhh-h
Confidence            4667777777778899999998876 433222   2  35889999999984 34332  234567889999998873 5


Q ss_pred             chhhhcccccccccCCCCCCCCccceeeeccC--CCcceeccCCCcccCCCCccEEeeecCC
Q 012933          214 IEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL--PKLKRFCNFTGNIIELPELQHLTIQNCP  273 (453)
Q Consensus       214 l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~l~~~~~~~~~~~~l~~L~~L~l~~c~  273 (453)
                      ++++.++..          + =+|..|++.+.  .++..+    ..++++|.|+++.+.+.+
T Consensus       364 iE~LSGL~K----------L-YSLvnLDl~~N~Ie~ldeV----~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  364 IETLSGLRK----------L-YSLVNLDLSSNQIEELDEV----NHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             HhhhhhhHh----------h-hhheeccccccchhhHHHh----cccccccHHHHHhhcCCC
Confidence            666543221          1 45777777664  344443    678899999999998865

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.06  E-value=5.1e-05  Score=74.54  Aligned_cols=125  Identities=19%  Similarity=0.220  Sum_probs=75.7

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ  137 (453)
Q Consensus        58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  137 (453)
                      +..|.+|+++. +.+...+..  . .+--|+.|.+.+ ++++.+|.+++..+.|..|+.+               .+.+.
T Consensus       120 L~~lt~l~ls~-NqlS~lp~~--l-C~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s---------------~nei~  179 (722)
T KOG0532|consen  120 LEALTFLDLSS-NQLSHLPDG--L-CDLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVS---------------KNEIQ  179 (722)
T ss_pred             hhHHHHhhhcc-chhhcCChh--h-hcCcceeEEEec-CccccCCcccccchhHHHhhhh---------------hhhhh
Confidence            55555555554 334444433  1 223466666666 4677777777777777777777               44556


Q ss_pred             HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccC
Q 012933          138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC  211 (453)
Q Consensus       138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~  211 (453)
                      .++..+.++.+|+.|.+..+. +..++...    . .-.|.+|+++ |+++..+ |.. +.+|+.|++|.++++
T Consensus       180 slpsql~~l~slr~l~vrRn~-l~~lp~El----~-~LpLi~lDfS-cNkis~i-Pv~-fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  180 SLPSQLGYLTSLRDLNVRRNH-LEDLPEEL----C-SLPLIRLDFS-CNKISYL-PVD-FRKMRHLQVLQLENN  244 (722)
T ss_pred             hchHHhhhHHHHHHHHHhhhh-hhhCCHHH----h-CCceeeeecc-cCceeec-chh-hhhhhhheeeeeccC
Confidence            666677777777777776665 44444333    1 1246677777 3455544 555 677777777777664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=0.00036  Score=63.46  Aligned_cols=214  Identities=14%  Similarity=0.102  Sum_probs=113.0

Q ss_pred             ccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccc-cccccCCCcceEeecCCCCccccccC
Q 012933           26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLE-NYTLEFPSLERVSMTHCPNMKTFSHG  104 (453)
Q Consensus        26 ~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~  104 (453)
                      ..-++-|.+.+| .+..+....     ......+.++.+++.+ +.+.+|... ....++|.|+.|+++.++--..+...
T Consensus        44 ~ra~ellvln~~-~id~~gd~~-----~~~~~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l  116 (418)
T KOG2982|consen   44 LRALELLVLNGS-IIDNEGDVM-----LFGSSVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL  116 (418)
T ss_pred             ccchhhheecCC-CCCcchhHH-----HHHHHhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCccccC
Confidence            445667778887 344332211     1223477899999998 567777543 33568999999999886532222211


Q ss_pred             ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCC----CCcccccCCCCCcCccCCCcEE
Q 012933          105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFP----HLKEIWHGQALPVSFFNNLARL  180 (453)
Q Consensus       105 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~l~~~~~~~~l~~~~l~~L~~L  180 (453)
                      -.-..+|+.|-+++-    .++|.         .....+..+|.+++|.++.+.    .+.+-...     ..-+.++++
T Consensus       117 p~p~~nl~~lVLNgT----~L~w~---------~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e-----~~s~~v~tl  178 (418)
T KOG2982|consen  117 PLPLKNLRVLVLNGT----GLSWT---------QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE-----DWSTEVLTL  178 (418)
T ss_pred             cccccceEEEEEcCC----CCChh---------hhhhhhhcchhhhhhhhccchhhhhcccccccc-----ccchhhhhh
Confidence            134567888888852    22333         333344556777777776653    11111111     123467777


Q ss_pred             EecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccC
Q 012933          181 VVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIE  260 (453)
Q Consensus       181 ~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~  260 (453)
                      ...+|....-.---....-++|+..+.+..|+ +.+...-+        ....||.+.-|+|.. .++.+ |........
T Consensus       179 h~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek--------~se~~p~~~~LnL~~-~~ids-wasvD~Ln~  247 (418)
T KOG2982|consen  179 HQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEK--------GSEPFPSLSCLNLGA-NNIDS-WASVDALNG  247 (418)
T ss_pred             hcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcc--------cCCCCCcchhhhhcc-ccccc-HHHHHHHcC
Confidence            77777522100000112345666767666653 22211111        111335555555543 23444 333345667


Q ss_pred             CCCccEEeeecCCCC
Q 012933          261 LPELQHLTIQNCPDM  275 (453)
Q Consensus       261 l~~L~~L~l~~c~~l  275 (453)
                      +|+|..|.+...+-.
T Consensus       248 f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  248 FPQLVDLRVSENPLS  262 (418)
T ss_pred             CchhheeeccCCccc
Confidence            888888888775543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.79  E-value=0.00097  Score=42.94  Aligned_cols=38  Identities=34%  Similarity=0.551  Sum_probs=19.0

Q ss_pred             CccceeeccCCCccccCCCCCCCCCCCEEecccCcccccc
Q 012933          348 NLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINL  387 (453)
Q Consensus       348 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l  387 (453)
                      +|++|++++ +.++++|..+.++++|+.|+++++ .++++
T Consensus         2 ~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             T-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred             cceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence            455555555 345555554555556666666553 34443

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.70  E-value=0.00087  Score=66.30  Aligned_cols=180  Identities=18%  Similarity=0.221  Sum_probs=117.3

Q ss_pred             cccCcccccceEEeccccchhhhhccccccccccccccc-ccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933           21 FQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFS-KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK   99 (453)
Q Consensus        21 ~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~   99 (453)
                      ......+.++.|++.+. .+.+|+...+.        ++ +|+.|++++ ..+..++..  ...+++|+.|++.+++ +.
T Consensus       110 ~~~~~~~~l~~L~l~~n-~i~~i~~~~~~--------~~~nL~~L~l~~-N~i~~l~~~--~~~l~~L~~L~l~~N~-l~  176 (394)
T COG4886         110 SELLELTNLTSLDLDNN-NITDIPPLIGL--------LKSNLKELDLSD-NKIESLPSP--LRNLPNLKNLDLSFND-LS  176 (394)
T ss_pred             hhhhcccceeEEecCCc-ccccCcccccc--------chhhcccccccc-cchhhhhhh--hhccccccccccCCch-hh
Confidence            34444577899999985 78888876554        53 899999998 556555322  5689999999999974 88


Q ss_pred             ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcE
Q 012933          100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR  179 (453)
Q Consensus       100 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~  179 (453)
                      .+|......++|+.|++++               +.+..++..+.....|+++.++++..... ....    ..+.++..
T Consensus       177 ~l~~~~~~~~~L~~L~ls~---------------N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-~~~~----~~~~~l~~  236 (394)
T COG4886         177 DLPKLLSNLSNLNNLDLSG---------------NKISDLPPEIELLSALEELDLSNNSIIEL-LSSL----SNLKNLSG  236 (394)
T ss_pred             hhhhhhhhhhhhhheeccC---------------CccccCchhhhhhhhhhhhhhcCCcceec-chhh----hhcccccc
Confidence            8877666889999999984               45556665544456688888888752222 1111    33556666


Q ss_pred             EEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCc
Q 012933          180 LVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKL  248 (453)
Q Consensus       180 L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l  248 (453)
                      +.+.+. .+...  ...+..+++++.|+++++ .+.++..          .. ...+++.|.+.+..-.
T Consensus       237 l~l~~n-~~~~~--~~~~~~l~~l~~L~~s~n-~i~~i~~----------~~-~~~~l~~L~~s~n~~~  290 (394)
T COG4886         237 LELSNN-KLEDL--PESIGNLSNLETLDLSNN-QISSISS----------LG-SLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccCCc-eeeec--cchhccccccceeccccc-ccccccc----------cc-ccCccCEEeccCcccc
Confidence            664443 22221  234777888888888774 4444422          11 2277888888775433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.63  E-value=0.0021  Score=63.53  Aligned_cols=173  Identities=21%  Similarity=0.283  Sum_probs=104.5

Q ss_pred             cCCCcceEeecCCCCccccccCccCCC-CcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCc
Q 012933           83 EFPSLERVSMTHCPNMKTFSHGILSTP-KLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLK  161 (453)
Q Consensus        83 ~l~~L~~L~l~~c~~l~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  161 (453)
                      .++.++.|++.+. .++.++....... +|+.|+++               .+.+..++..+..+++|+.|.+++++ +.
T Consensus       114 ~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~---------------~N~i~~l~~~~~~l~~L~~L~l~~N~-l~  176 (394)
T COG4886         114 ELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLS---------------DNKIESLPSPLRNLPNLKNLDLSFND-LS  176 (394)
T ss_pred             cccceeEEecCCc-ccccCccccccchhhccccccc---------------ccchhhhhhhhhccccccccccCCch-hh
Confidence            4567888888774 5777777666664 88888888               45566666667778888888888886 55


Q ss_pred             ccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceee
Q 012933          162 EIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLR  241 (453)
Q Consensus       162 ~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  241 (453)
                      +++...    ...++|+.|++++. .+..+ +.. ......|+.+.+++...+..+....           -+.++..+.
T Consensus       177 ~l~~~~----~~~~~L~~L~ls~N-~i~~l-~~~-~~~~~~L~~l~~~~N~~~~~~~~~~-----------~~~~l~~l~  238 (394)
T COG4886         177 DLPKLL----SNLSNLNNLDLSGN-KISDL-PPE-IELLSALEELDLSNNSIIELLSSLS-----------NLKNLSGLE  238 (394)
T ss_pred             hhhhhh----hhhhhhhheeccCC-ccccC-chh-hhhhhhhhhhhhcCCcceecchhhh-----------hcccccccc
Confidence            555442    24688888888885 34444 322 2345558888887764333321111           114444444


Q ss_pred             eccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccc
Q 012933          242 LIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSE  299 (453)
Q Consensus       242 L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~  299 (453)
                      +.+.. +..+   +..+..+++++.|+++++. +..++.    ++.+.+++.|++++.
T Consensus       239 l~~n~-~~~~---~~~~~~l~~l~~L~~s~n~-i~~i~~----~~~~~~l~~L~~s~n  287 (394)
T COG4886         239 LSNNK-LEDL---PESIGNLSNLETLDLSNNQ-ISSISS----LGSLTNLRELDLSGN  287 (394)
T ss_pred             cCCce-eeec---cchhccccccceecccccc-cccccc----ccccCccCEEeccCc
Confidence            33222 2211   2456677778888887643 333332    345567777777765

>PLN03150 hypothetical protein; Provisional

Probab=96.40  E-value=0.006  Score=63.89  Aligned_cols=69  Identities=17%  Similarity=0.169  Sum_probs=41.6

Q ss_pred             HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCc
Q 012933          138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCD  212 (453)
Q Consensus       138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~  212 (453)
                      .++..+..+++|+.|+++++.-...++...    ..+++|+.|+++++ .+....|.. +..+++|+.|+++++.
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~----~~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNSIRGNIPPSL----GSITSLEVLDLSYN-SFNGSIPES-LGQLTSLRILNLNGNS  501 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCcccCcCChHH----hCCCCCCEEECCCC-CCCCCCchH-HhcCCCCCEEECcCCc
Confidence            344555666777777777765222333322    44677777777775 344444443 6777777777777754

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.35  E-value=0.0044  Score=56.58  Aligned_cols=215  Identities=16%  Similarity=0.054  Sum_probs=115.1

Q ss_pred             CCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCC
Q 012933          108 TPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTN  187 (453)
Q Consensus       108 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~  187 (453)
                      +..++.+++.++            ..+.+.++...+..+|.|++|+++.+.--..+-.   +| --..||+.|.+.|.. 
T Consensus        70 ~~~v~elDL~~N------------~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~---lp-~p~~nl~~lVLNgT~-  132 (418)
T KOG2982|consen   70 VTDVKELDLTGN------------LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS---LP-LPLKNLRVLVLNGTG-  132 (418)
T ss_pred             hhhhhhhhcccc------------hhccHHHHHHHHhcCccceEeeccCCcCCCcccc---Cc-ccccceEEEEEcCCC-
Confidence            556677777643            2445667777788899999999988763333222   22 226799999999853 


Q ss_pred             ccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceec-cCCCcccCCCCccE
Q 012933          188 MSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC-NFTGNIIELPELQH  266 (453)
Q Consensus       188 l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~~l~~L~~  266 (453)
                      +.-.-....+..++.++.|.+++++.-.-....   ++    ....-|.+++|++..|....  | +......-||++..
T Consensus       133 L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd---~c----~e~~s~~v~tlh~~~c~~~~--w~~~~~l~r~Fpnv~s  203 (418)
T KOG2982|consen  133 LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDD---NC----IEDWSTEVLTLHQLPCLEQL--WLNKNKLSRIFPNVNS  203 (418)
T ss_pred             CChhhhhhhhhcchhhhhhhhccchhhhhcccc---cc----ccccchhhhhhhcCCcHHHH--HHHHHhHHhhcccchh
Confidence            322223345677888888888775221111110   11    11121678888887775322  2 11223345888888


Q ss_pred             EeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccC--Ccccc
Q 012933          267 LTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEN--DESNK  344 (453)
Q Consensus       267 L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~~  344 (453)
                      +.+..|+--+.-...+  ..+++.+--|.+..+..-.++     ..++...||.|..|.+...+-...+..+.  +-..+
T Consensus       204 v~v~e~PlK~~s~ek~--se~~p~~~~LnL~~~~idswa-----svD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa  276 (418)
T KOG2982|consen  204 VFVCEGPLKTESSEKG--SEPFPSLSCLNLGANNIDSWA-----SVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA  276 (418)
T ss_pred             eeeecCcccchhhccc--CCCCCcchhhhhcccccccHH-----HHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence            8888775322212221  333444444444433111100     22345567777777777665444433211  11124


Q ss_pred             cCCCccceeec
Q 012933          345 AFANLESLEIS  355 (453)
Q Consensus       345 ~l~~L~~L~l~  355 (453)
                      .++++|.|+=+
T Consensus       277 RL~~v~vLNGs  287 (418)
T KOG2982|consen  277 RLTKVQVLNGS  287 (418)
T ss_pred             eccceEEecCc
Confidence            55555555444

>PLN03150 hypothetical protein; Provisional

Probab=96.33  E-value=0.0055  Score=64.19  Aligned_cols=109  Identities=13%  Similarity=0.057  Sum_probs=55.5

Q ss_pred             cceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHH
Q 012933           61 LKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY  140 (453)
Q Consensus        61 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  140 (453)
                      ++.|+++++ .+...... ....+++|+.|+++++.-...+|..+..+++|+.|+++.+              .....++
T Consensus       420 v~~L~L~~n-~L~g~ip~-~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N--------------~lsg~iP  483 (623)
T PLN03150        420 IDGLGLDNQ-GLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN--------------SFNGSIP  483 (623)
T ss_pred             EEEEECCCC-CccccCCH-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC--------------CCCCCCc
Confidence            455555552 23322111 1445666777777665433356656666667777766642              1122345


Q ss_pred             HhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCc
Q 012933          141 EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNM  188 (453)
Q Consensus       141 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l  188 (453)
                      ..+..+++|++|+++++.-...+|...  . ..+.++..+++.++..+
T Consensus       484 ~~l~~L~~L~~L~Ls~N~l~g~iP~~l--~-~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        484 ESLGQLTSLRILNLNGNSLSGRVPAAL--G-GRLLHRASFNFTDNAGL  528 (623)
T ss_pred             hHHhcCCCCCEEECcCCcccccCChHH--h-hccccCceEEecCCccc
Confidence            555666777777776665222333221  0 11234556666665433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.33  E-value=0.0035  Score=40.36  Aligned_cols=40  Identities=28%  Similarity=0.358  Sum_probs=27.1

Q ss_pred             CCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccC
Q 012933          319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV  364 (453)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~  364 (453)
                      ++|++|+++++ .+++++.+.    +.+++|+.|+++++ .+++++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l----~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPEL----SNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHG----TTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCC-CCcccCchH----hCCCCCCEEEecCC-CCCCCc
Confidence            46788888887 677776533    68888888888884 465553

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.06  E-value=0.00082  Score=66.37  Aligned_cols=131  Identities=17%  Similarity=0.176  Sum_probs=94.6

Q ss_pred             cccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccc
Q 012933           21 FQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT  100 (453)
Q Consensus        21 ~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  100 (453)
                      .+..++..|++|+|+.+ ++..+|.++..         =-|+.|.+++ ++++..+..  .+..+.|..|+.++| .+..
T Consensus       115 ~~i~~L~~lt~l~ls~N-qlS~lp~~lC~---------lpLkvli~sN-Nkl~~lp~~--ig~~~tl~~ld~s~n-ei~s  180 (722)
T KOG0532|consen  115 EAICNLEALTFLDLSSN-QLSHLPDGLCD---------LPLKVLIVSN-NKLTSLPEE--IGLLPTLAHLDVSKN-EIQS  180 (722)
T ss_pred             hhhhhhhHHHHhhhccc-hhhcCChhhhc---------CcceeEEEec-CccccCCcc--cccchhHHHhhhhhh-hhhh
Confidence            44677888888999884 78888876653         3478888877 778888777  457788889998886 4777


Q ss_pred             cccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEE
Q 012933          101 FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARL  180 (453)
Q Consensus       101 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L  180 (453)
                      +|...+++.+|+.|.++               .+....++.++. .-.|..|+++.++ +..+|...    ..+..|++|
T Consensus       181 lpsql~~l~slr~l~vr---------------Rn~l~~lp~El~-~LpLi~lDfScNk-is~iPv~f----r~m~~Lq~l  239 (722)
T KOG0532|consen  181 LPSQLGYLTSLRDLNVR---------------RNHLEDLPEELC-SLPLIRLDFSCNK-ISYLPVDF----RKMRHLQVL  239 (722)
T ss_pred             chHHhhhHHHHHHHHHh---------------hhhhhhCCHHHh-CCceeeeecccCc-eeecchhh----hhhhhheee
Confidence            88888888888888887               455566666666 3346677776665 66655544    556778888


Q ss_pred             EecCCC
Q 012933          181 VVDDCT  186 (453)
Q Consensus       181 ~l~~c~  186 (453)
                      .+.+.+
T Consensus       240 ~LenNP  245 (722)
T KOG0532|consen  240 QLENNP  245 (722)
T ss_pred             eeccCC
Confidence            887654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.51  E-value=0.0053  Score=57.25  Aligned_cols=14  Identities=29%  Similarity=0.237  Sum_probs=9.5

Q ss_pred             cccccceEEecccc
Q 012933           25 IPSSLVNLNVSRCD   38 (453)
Q Consensus        25 ~~~~L~~L~L~~c~   38 (453)
                      ...+++.++++|+.
T Consensus        28 ~~~s~~~l~lsgnt   41 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNT   41 (382)
T ss_pred             ccCceEEEeccCCc
Confidence            35667778888753

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=94.93  E-value=0.011  Score=55.32  Aligned_cols=230  Identities=18%  Similarity=0.135  Sum_probs=128.0

Q ss_pred             CcccccceEEeccccchh----hhhcccccccccccccccccceeecccccccccccc--ccccccCCCcceEeecCCCC
Q 012933           24 GIPSSLVNLNVSRCDKIE----EIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCL--ENYTLEFPSLERVSMTHCPN   97 (453)
Q Consensus        24 ~~~~~L~~L~L~~c~~l~----~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~L~~L~l~~c~~   97 (453)
                      ..-++|+..++++. ..+    ++|..+. ..+.....+++|++|+|++..-=.+...  ...+.++..|++|++.+|. 
T Consensus        55 ~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~-~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-  131 (382)
T KOG1909|consen   55 ASKKELREVNLSDM-FTGRLKDEIPEALK-MLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-  131 (382)
T ss_pred             hhcccceeeehHhh-hcCCcHHHHHHHHH-HHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-
Confidence            44567888888875 222    3443222 1223455578999999998321111111  1345668999999999985 


Q ss_pred             ccc--------------cccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCccc
Q 012933           98 MKT--------------FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEI  163 (453)
Q Consensus        98 l~~--------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  163 (453)
                      +..              ....+.+.+.||.+....+.-       +   +-.-..+-......+.|+.+++..+. +..-
T Consensus       132 lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-------e---n~ga~~~A~~~~~~~~leevr~~qN~-I~~e  200 (382)
T KOG1909|consen  132 LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-------E---NGGATALAEAFQSHPTLEEVRLSQNG-IRPE  200 (382)
T ss_pred             CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-------c---cccHHHHHHHHHhccccceEEEeccc-ccCc
Confidence            331              233456778899888875321       0   00112233344456889999998775 3211


Q ss_pred             ccCC-CCCcCccCCCcEEEecCCCCcccc---CchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccce
Q 012933          164 WHGQ-ALPVSFFNNLARLVVDDCTNMSSA---IPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYG  239 (453)
Q Consensus       164 ~~~~-~l~~~~l~~L~~L~l~~c~~l~~~---~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~  239 (453)
                      .... ......+|.|+.|++++.. ++..   .-...++.+++|+.|.+++|. +..-    |...+.......+|+|+.
T Consensus       201 G~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcl-l~~~----Ga~a~~~al~~~~p~L~v  274 (382)
T KOG1909|consen  201 GVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCL-LENE----GAIAFVDALKESAPSLEV  274 (382)
T ss_pred             hhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccc-cccc----cHHHHHHHHhccCCCCce
Confidence            1000 0123568999999999853 2211   122346778889999999983 2221    111111111123489999


Q ss_pred             eeeccCCCcce-eccCCCcccCCCCccEEeeecCC
Q 012933          240 LRLIDLPKLKR-FCNFTGNIIELPELQHLTIQNCP  273 (453)
Q Consensus       240 L~L~~~~~l~~-~~~~~~~~~~l~~L~~L~l~~c~  273 (453)
                      +.+.++.--.+ .-.....+...|.|++|.+++|.
T Consensus       275 l~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  275 LELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             eccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            99988741111 00011234457888888888865

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.87  E-value=0.055  Score=46.85  Aligned_cols=88  Identities=19%  Similarity=0.220  Sum_probs=57.2

Q ss_pred             cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC--CCCCCCCCCEEecccCcccccccCC--
Q 012933          315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP--PSWHLENLEALEVSKCHGLINLLTF--  390 (453)
Q Consensus       315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~~--  390 (453)
                      +..+++|++|.+.++ +++++.....   ..+|+|+.|.+.+ +++..+.+  ....+|.|++|.+-+ +.++.-...  
T Consensus        60 lp~l~rL~tLll~nN-rIt~I~p~L~---~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~-Npv~~k~~YR~  133 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNN-RITRIDPDLD---TFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLG-NPVEHKKNYRL  133 (233)
T ss_pred             CCCccccceEEecCC-cceeeccchh---hhccccceEEecC-cchhhhhhcchhccCCccceeeecC-CchhcccCcee
Confidence            446678888888777 6777766554   5677888888888 55655543  245677888887755 333332221  


Q ss_pred             CcccccCCcceEEEcccc
Q 012933          391 STSESLVNLGRMMIADCK  408 (453)
Q Consensus       391 ~~~~~l~~L~~L~i~~C~  408 (453)
                      .+.-.+|+|++||.++..
T Consensus       134 yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  134 YVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             EEEEecCcceEeehhhhh
Confidence            133467888888887665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.86  E-value=0.00062  Score=69.06  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=21.0

Q ss_pred             CCCccEEEEeeCCCCccc-ccCCCCCcCccCCCcEEEecCCC
Q 012933          146 FRDMEYLQLSYFPHLKEI-WHGQALPVSFFNNLARLVVDDCT  186 (453)
Q Consensus       146 ~~~L~~L~l~~~~~l~~~-~~~~~l~~~~l~~L~~L~l~~c~  186 (453)
                      ++++..+.+...+.-... +... +   -|..|++|.+++|+
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~i-f---pF~sLr~LElrg~~  120 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISI-F---PFRSLRVLELRGCD  120 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCcee-c---cccceeeEEecCcc
Confidence            355555555444422221 2222 2   37899999999986

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.84  E-value=0.0022  Score=55.22  Aligned_cols=87  Identities=16%  Similarity=0.204  Sum_probs=57.8

Q ss_pred             CcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC-C-CCCCCCCCEEecccCcccccccCCCcccccC
Q 012933          320 RLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-P-SWHLENLEALEVSKCHGLINLLTFSTSESLV  397 (453)
Q Consensus       320 ~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~  397 (453)
                      .++.++-+++ .+.....+.+   ..+++++.|.+.+|..+.+.-- . .+-.++|+.|++++|+.+++-... ....++
T Consensus       102 ~IeaVDAsds-~I~~eGle~L---~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lk  176 (221)
T KOG3864|consen  102 KIEAVDASDS-SIMYEGLEHL---RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLK  176 (221)
T ss_pred             eEEEEecCCc-hHHHHHHHHH---hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhh
Confidence            3555566666 4555554444   7888888888888876665322 1 224588888888888888875332 334678


Q ss_pred             CcceEEEcccchhH
Q 012933          398 NLGRMMIADCKMIE  411 (453)
Q Consensus       398 ~L~~L~i~~C~~l~  411 (453)
                      +|+.|.+.+.+.+.
T Consensus       177 nLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  177 NLRRLHLYDLPYVA  190 (221)
T ss_pred             hhHHHHhcCchhhh
Confidence            88888888777653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.81  E-value=0.017  Score=49.88  Aligned_cols=74  Identities=18%  Similarity=0.266  Sum_probs=53.9

Q ss_pred             HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchh
Q 012933          140 YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEE  216 (453)
Q Consensus       140 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~  216 (453)
                      ...+.+++.++.|.+.+|.++.+..... +. ...++|+.|++++|+.+++. ....+..+++|+.|.+.+.+.+..
T Consensus       118 le~L~~l~~i~~l~l~~ck~~dD~~L~~-l~-~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  118 LEHLRDLRSIKSLSLANCKYFDDWCLER-LG-GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVAN  191 (221)
T ss_pred             HHHHhccchhhhheeccccchhhHHHHH-hc-ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhhc
Confidence            4556778889999999999777643333 33 25799999999999988765 444567788888888877655443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.34  E-value=0.006  Score=62.23  Aligned_cols=106  Identities=22%  Similarity=0.172  Sum_probs=53.3

Q ss_pred             cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCccccc
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESL  396 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l  396 (453)
                      .+|.|+.|+++.+ +++++.  .+   ..++.|++|+++. +.++.+|..-..--.|+.|.+++ +.++.+   ....++
T Consensus       185 ll~ale~LnLshN-k~~~v~--~L---r~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn-N~l~tL---~gie~L  253 (1096)
T KOG1859|consen  185 LLPALESLNLSHN-KFTKVD--NL---RRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN-NALTTL---RGIENL  253 (1096)
T ss_pred             HHHHhhhhccchh-hhhhhH--HH---Hhccccccccccc-chhccccccchhhhhheeeeecc-cHHHhh---hhHHhh
Confidence            4566666666665 344333  11   4666666666666 55666654221112366666655 555554   234455


Q ss_pred             CCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933          397 VNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE  440 (453)
Q Consensus       397 ~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~  440 (453)
                      .+|+.||+++.--.+       -.+-.-...+-.|+.|.|.+||
T Consensus       254 ksL~~LDlsyNll~~-------hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSE-------HSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhhhccchhHhhhhc-------chhhhHHHHHHHHHHHhhcCCc
Confidence            666666654322110       0011122234566667777766

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.19  E-value=0.028  Score=50.54  Aligned_cols=113  Identities=22%  Similarity=0.122  Sum_probs=70.5

Q ss_pred             ccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC
Q 012933          286 VTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP  365 (453)
Q Consensus       286 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~  365 (453)
                      ..+..|+.+.+.++.-.+        +.....+|+|+.|.++++..-.......+  ...+|+|+++.+++ ++++.+..
T Consensus        40 d~~~~le~ls~~n~gltt--------~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~-Nki~~lst  108 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTT--------LTNFPKLPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSG-NKIKDLST  108 (260)
T ss_pred             ccccchhhhhhhccceee--------cccCCCcchhhhhcccCCcccccccceeh--hhhCCceeEEeecC-Cccccccc
Confidence            344567777766653322        34456788999999998732222222221  14569999999999 66665322


Q ss_pred             --CCCCCCCCCEEecccCcccccc--cCCCcccccCCcceEEEcccchh
Q 012933          366 --PSWHLENLEALEVSKCHGLINL--LTFSTSESLVNLGRMMIADCKMI  410 (453)
Q Consensus       366 --~~~~l~~L~~L~l~~c~~l~~l--~~~~~~~~l~~L~~L~i~~C~~l  410 (453)
                        ....+.+|..|.+.+|.-.. +  .....+.-+++|++++..++..-
T Consensus       109 l~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen  109 LRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             cchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCc
Confidence              24467788888888876543 2  11224455788998888777643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.50  E-value=0.024  Score=50.93  Aligned_cols=134  Identities=22%  Similarity=0.180  Sum_probs=75.3

Q ss_pred             ccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccccccccccc
Q 012933          236 KLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEK  315 (453)
Q Consensus       236 ~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~  315 (453)
                      ..+.+.+.+|.....  ......-.+..|+.+++.++...+...     +..+++|+.|.++++.- .+..++.+   -.
T Consensus        19 ~v~~l~lD~~~s~~g--~~~gl~d~~~~le~ls~~n~gltt~~~-----~P~Lp~LkkL~lsdn~~-~~~~~l~v---l~   87 (260)
T KOG2739|consen   19 QVDELFLDNARSGAG--KLGGLTDEFVELELLSVINVGLTTLTN-----FPKLPKLKKLELSDNYR-RVSGGLEV---LA   87 (260)
T ss_pred             hhhhhhcchhhhcCC--Ccccccccccchhhhhhhccceeeccc-----CCCcchhhhhcccCCcc-ccccccee---hh
Confidence            355566665532221  112233345566677766654322211     34566999999988611 10011111   11


Q ss_pred             ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC----CCCCCCCCCEEecccCccc
Q 012933          316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP----PSWHLENLEALEVSKCHGL  384 (453)
Q Consensus       316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l~~c~~l  384 (453)
                      ...|+|+++.++++ .++.+.  .......+.+|..|++..|.... +-.    .+.-+++|+.|+-..+..-
T Consensus        88 e~~P~l~~l~ls~N-ki~~ls--tl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen   88 EKAPNLKVLNLSGN-KIKDLS--TLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             hhCCceeEEeecCC-cccccc--ccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCc
Confidence            24499999999998 555432  11222678889999999986443 322    1445788888887665443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.21  E-value=0.16  Score=44.02  Aligned_cols=68  Identities=19%  Similarity=0.195  Sum_probs=31.0

Q ss_pred             ccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCC
Q 012933           20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCP   96 (453)
Q Consensus        20 ~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~   96 (453)
                      +..+..++.|.+|.++++ ++..|-..++.       .+++|+.|.+.+ +++..+..-+....+|+|++|.+-+++
T Consensus        57 l~~lp~l~rL~tLll~nN-rIt~I~p~L~~-------~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   57 LDNLPHLPRLHTLLLNNN-RITRIDPDLDT-------FLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             cccCCCccccceEEecCC-cceeeccchhh-------hccccceEEecC-cchhhhhhcchhccCCccceeeecCCc
Confidence            333444555555555553 45444333322       245555555554 333333333333445555555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.40  E-value=1.3  Score=35.56  Aligned_cols=31  Identities=13%  Similarity=0.271  Sum_probs=11.4

Q ss_pred             CcCEEeecCCCCcceecccCCcccccCCCccceeec
Q 012933          320 RLRWLELSGLHKVQHLWKENDESNKAFANLESLEIS  355 (453)
Q Consensus       320 ~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~  355 (453)
                      +++.+.+.+  .+..+....|   ..+++|+.+.+.
T Consensus        59 ~l~~i~~~~--~~~~i~~~~F---~~~~~l~~i~~~   89 (129)
T PF13306_consen   59 SLESITFPN--NLKSIGDNAF---SNCTNLKNIDIP   89 (129)
T ss_dssp             T-EEEEETS--TT-EE-TTTT---TT-TTECEEEET
T ss_pred             ccccccccc--cccccccccc---cccccccccccC
Confidence            344444432  3334444444   344444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.35  E-value=0.11  Score=27.69  Aligned_cols=15  Identities=33%  Similarity=0.561  Sum_probs=6.2

Q ss_pred             cCEEeecCCCCcceec
Q 012933          321 LRWLELSGLHKVQHLW  336 (453)
Q Consensus       321 L~~L~l~~~~~l~~l~  336 (453)
                      |++|++++| .++.+|
T Consensus         2 L~~Ldls~n-~l~~ip   16 (22)
T PF00560_consen    2 LEYLDLSGN-NLTSIP   16 (22)
T ss_dssp             ESEEEETSS-EESEEG
T ss_pred             ccEEECCCC-cCEeCC
Confidence            344444444 333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=91.01  E-value=0.016  Score=46.95  Aligned_cols=25  Identities=24%  Similarity=0.426  Sum_probs=11.0

Q ss_pred             hhHHHHHHhhcCCCCccEEEEeeCC
Q 012933          134 STIQKCYEEMIGFRDMEYLQLSYFP  158 (453)
Q Consensus       134 ~~~~~~~~~~~~~~~L~~L~l~~~~  158 (453)
                      +.+.++|.++..++.|+.++++.++
T Consensus        87 neisdvPeE~Aam~aLr~lNl~~N~  111 (177)
T KOG4579|consen   87 NEISDVPEELAAMPALRSLNLRFNP  111 (177)
T ss_pred             hhhhhchHHHhhhHHhhhcccccCc
Confidence            3344444444444444444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.91  E-value=1.6  Score=35.12  Aligned_cols=40  Identities=13%  Similarity=0.296  Sum_probs=19.2

Q ss_pred             CCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC
Q 012933          318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP  365 (453)
Q Consensus       318 l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~  365 (453)
                      .++|+.+.+..  .+..+....|   ... .|+.+.+..  .++.++.
T Consensus        80 ~~~l~~i~~~~--~~~~i~~~~f---~~~-~l~~i~~~~--~~~~i~~  119 (129)
T PF13306_consen   80 CTNLKNIDIPS--NITEIGSSSF---SNC-NLKEINIPS--NITKIEE  119 (129)
T ss_dssp             -TTECEEEETT--T-BEEHTTTT---TT--T--EEE-TT--B-SS---
T ss_pred             cccccccccCc--cccEEchhhh---cCC-CceEEEECC--CccEECC
Confidence            46777777754  3667777766   555 777776654  3444443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.78  E-value=0.14  Score=25.33  Aligned_cols=17  Identities=18%  Similarity=0.302  Sum_probs=9.8

Q ss_pred             cccceEEeccccchhhhh
Q 012933           27 SSLVNLNVSRCDKIEEII   44 (453)
Q Consensus        27 ~~L~~L~L~~c~~l~~i~   44 (453)
                      ++|+.|++++|. ++++|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            468888888874 66654

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=88.97  E-value=0.069  Score=29.83  Aligned_cols=22  Identities=14%  Similarity=0.134  Sum_probs=12.7

Q ss_pred             ccccchhhhhhHHHHHHhhhhc
Q 012933          429 KELSCETMSKNEDLLSRSLRHT  450 (453)
Q Consensus       429 ~~l~~l~l~~~~~~~~~~~~~~  450 (453)
                      |+|+.|+++.|+.++++++++.
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHHH
Confidence            4555566666666666665554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.53  E-value=0.014  Score=52.96  Aligned_cols=103  Identities=17%  Similarity=0.009  Sum_probs=57.9

Q ss_pred             CCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC--
Q 012933          288 TDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP--  365 (453)
Q Consensus       288 l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--  365 (453)
                      +.+.+.|+.++|.--.    +    ......|.|+.|.++=+ +++++..  +   ..+++|++|.+.. +.+.++.+  
T Consensus        18 l~~vkKLNcwg~~L~D----I----sic~kMp~lEVLsLSvN-kIssL~p--l---~rCtrLkElYLRk-N~I~sldEL~   82 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD----I----SICEKMPLLEVLSLSVN-KISSLAP--L---QRCTRLKELYLRK-NCIESLDELE   82 (388)
T ss_pred             HHHhhhhcccCCCccH----H----HHHHhcccceeEEeecc-ccccchh--H---HHHHHHHHHHHHh-cccccHHHHH
Confidence            4466677777762111    0    11225577777777665 4555432  2   5778888888887 55655543  


Q ss_pred             CCCCCCCCCEEecccCcccccccCC---CcccccCCcceEEEc
Q 012933          366 PSWHLENLEALEVSKCHGLINLLTF---STSESLVNLGRMMIA  405 (453)
Q Consensus       366 ~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~l~~L~~L~i~  405 (453)
                      +..++|+|+.|-+...+--..-+..   .+...+|+|++||=.
T Consensus        83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv  125 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV  125 (388)
T ss_pred             HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence            4567788888777553322221110   133456777777643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=88.52  E-value=0.051  Score=44.12  Aligned_cols=55  Identities=15%  Similarity=0.382  Sum_probs=28.5

Q ss_pred             ccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEec
Q 012933           60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVT  117 (453)
Q Consensus        60 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~  117 (453)
                      .|+..++++ +.+++++.. +...+|-++.+++.++ ++..+|..+..++.|+.++++
T Consensus        54 el~~i~ls~-N~fk~fp~k-ft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   54 ELTKISLSD-NGFKKFPKK-FTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             eEEEEeccc-chhhhCCHH-Hhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccc
Confidence            444455555 344444433 2344555555555553 455555555555666666555

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=88.28  E-value=0.17  Score=50.38  Aligned_cols=86  Identities=22%  Similarity=0.232  Sum_probs=66.0

Q ss_pred             ccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcc
Q 012933          314 EKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTS  393 (453)
Q Consensus       314 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~  393 (453)
                      ..+.+.+|+.|++.++ .++.+... .   ..+++|+.|++++ +.++++.. +..++.|+.|++.+ +.++++..   .
T Consensus        90 ~l~~~~~l~~l~l~~n-~i~~i~~~-l---~~~~~L~~L~ls~-N~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~~---~  158 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDN-KIEKIENL-L---SSLVNLQVLDLSF-NKITKLEG-LSTLTLLKELNLSG-NLISDISG---L  158 (414)
T ss_pred             ccccccceeeeecccc-chhhcccc-h---hhhhcchheeccc-cccccccc-hhhccchhhheecc-CcchhccC---C
Confidence            3678899999999998 66666542 1   6899999999999 77877643 45677799999987 77888754   4


Q ss_pred             cccCCcceEEEcccchh
Q 012933          394 ESLVNLGRMMIADCKMI  410 (453)
Q Consensus       394 ~~l~~L~~L~i~~C~~l  410 (453)
                      ..+++|+.+++.++...
T Consensus       159 ~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  159 ESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             ccchhhhcccCCcchhh
Confidence            45788999998877643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=87.43  E-value=0.31  Score=48.56  Aligned_cols=103  Identities=15%  Similarity=0.206  Sum_probs=55.4

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ  137 (453)
Q Consensus        58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  137 (453)
                      +++|+.|++.+ .+++++...  ...+++|++|+++++ +++.+ .++..++.|+.|++.++.               +.
T Consensus        94 ~~~l~~l~l~~-n~i~~i~~~--l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l~~N~---------------i~  153 (414)
T KOG0531|consen   94 LKSLEALDLYD-NKIEKIENL--LSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNLSGNL---------------IS  153 (414)
T ss_pred             ccceeeeeccc-cchhhcccc--hhhhhcchheecccc-ccccc-cchhhccchhhheeccCc---------------ch
Confidence            66777777776 444444331  345677777777774 45544 223445556666666431               11


Q ss_pred             HHHHhhcCCCCccEEEEeeCCCCcccccC-CCCCcCccCCCcEEEecCCC
Q 012933          138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHG-QALPVSFFNNLARLVVDDCT  186 (453)
Q Consensus       138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~l~~~~l~~L~~L~l~~c~  186 (453)
                      .+ .....+++|+.++++++. +..+... .    +.+++++.+.+.+..
T Consensus       154 ~~-~~~~~l~~L~~l~l~~n~-i~~ie~~~~----~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  154 DI-SGLESLKSLKLLDLSYNR-IVDIENDEL----SELISLEELDLGGNS  197 (414)
T ss_pred             hc-cCCccchhhhcccCCcch-hhhhhhhhh----hhccchHHHhccCCc
Confidence            11 111225667777777765 3332221 1    346777777777643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.33  E-value=0.051  Score=49.42  Aligned_cols=53  Identities=23%  Similarity=0.170  Sum_probs=23.8

Q ss_pred             CccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEecc
Q 012933          148 DMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRN  210 (453)
Q Consensus       148 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~  210 (453)
                      +.+.|+.-+|. +.++....     .+|.|+.|.++= ++++++.|   +..+++|+.|.+..
T Consensus        20 ~vkKLNcwg~~-L~DIsic~-----kMp~lEVLsLSv-NkIssL~p---l~rCtrLkElYLRk   72 (388)
T KOG2123|consen   20 NVKKLNCWGCG-LDDISICE-----KMPLLEVLSLSV-NKISSLAP---LQRCTRLKELYLRK   72 (388)
T ss_pred             HhhhhcccCCC-ccHHHHHH-----hcccceeEEeec-cccccchh---HHHHHHHHHHHHHh
Confidence            34444544443 44433332     245555555553 23333222   44555555555543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=81.35  E-value=0.81  Score=41.76  Aligned_cols=171  Identities=15%  Similarity=0.117  Sum_probs=82.4

Q ss_pred             cccccceEEeccccchhhhhcccccccccccccccccceeecccccc--c-cccccc-----cccccCCCcceEeecCCC
Q 012933           25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPT--L-TSFCLE-----NYTLEFPSLERVSMTHCP   96 (453)
Q Consensus        25 ~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~--l-~~~~~~-----~~~~~l~~L~~L~l~~c~   96 (453)
                      .+..++.++|||+..-++--..+.+    ..-.-.+|+..++++.-.  . ..++..     ....+||+|+..+++++.
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~----~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCN----VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHH----HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            3677889999996422221111111    111245666666664210  0 011100     224568888888888865


Q ss_pred             Ccccccc----CccCCCCcceEEeccccccccccccCCccchhHH------HHHHhhcCCCCccEEEEeeCCCCcc----
Q 012933           97 NMKTFSH----GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ------KCYEEMIGFRDMEYLQLSYFPHLKE----  162 (453)
Q Consensus        97 ~l~~~~~----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~l~~----  162 (453)
                      .-..+|.    -+++...|.+|.+++|--   .+..|.    .+.      ...+.+..-|.|++.....++ +..    
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGl---Gp~aG~----rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~  175 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGL---GPIAGG----RIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKE  175 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCC---Cccchh----HHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHH
Confidence            3222322    244567788888886510   111111    111      111233445677777776665 221    


Q ss_pred             cccCCCCCcCccCCCcEEEecCCCCc----cccCchhHHhhcCCCcEEEeccC
Q 012933          163 IWHGQALPVSFFNNLARLVVDDCTNM----SSAIPANLLRCLNNLQWLEVRNC  211 (453)
Q Consensus       163 ~~~~~~l~~~~l~~L~~L~l~~c~~l----~~~~~~~~l~~l~~L~~L~l~~~  211 (453)
                      .|... +  .+-.+|+++.+.....-    +..... .+..+.+|+.|++.++
T Consensus       176 ~~a~~-l--~sh~~lk~vki~qNgIrpegv~~L~~~-gl~y~~~LevLDlqDN  224 (388)
T COG5238         176 LSAAL-L--ESHENLKEVKIQQNGIRPEGVTMLAFL-GLFYSHSLEVLDLQDN  224 (388)
T ss_pred             HHHHH-H--HhhcCceeEEeeecCcCcchhHHHHHH-HHHHhCcceeeecccc
Confidence            12111 1  12257888877754211    111111 1445677777777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	453
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 1e-09
 Identities = 61/345 (17%), Positives = 119/345 (34%), Gaps = 95/345 (27%)

Query: 26  PSSLVNL-NVSRCDKIEEIIRHVGEEAKENRIAFS-KLKVLIL-------DYLP--TLTS 74
            + L+ L NV   +   +              AF+   K+L+        D+L   T T 
Sbjct: 244 ENCLLVLLNV--QNA--KAWN-----------AFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 75  FCLENYTLEFPSLERVSM-THCPNMKTFS--HGILSTPKLHKVQVTEKEEGELHHWEG-- 129
             L+++++     E  S+     + +       +L+T       + E     L  W+   
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 130 ----NKLNSTIQKCYE--EMIGFRDMEYLQLSYFPH--------LKEIWHG--QALPVSF 173
               +KL + I+      E   +R M + +LS FP         L  IW    ++  +  
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 174 FNNLAR--LVVDDCTNMSSAIPANLL--------------RCLNNLQWLEVRNCDSIEEV 217
            N L +  LV       + +IP+  L                +++    +  + D +   
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 218 L-----------HLEEQNADKEHRGPLFPKLY-GLRLIDLPKLKRF---CNFTGNIIELP 262
                       HL+  N +   R  LF  ++   R ++  K++      N +G+I  L 
Sbjct: 468 YLDQYFYSHIGHHLK--NIEHPERMTLFRMVFLDFRFLE-QKIRHDSTAWNASGSI--LN 522

Query: 263 ELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQ 307
            LQ L        + +I ++      D K  + + +  +FL   +
Sbjct: 523 TLQQLKF-----YKPYICDN------DPKYERLVNAILDFLPKIE 556

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 69/457 (15%), Positives = 132/457 (28%), Gaps = 152/457 (33%)

Query: 32  LNVSRCDKIEEI------------------------IRHVGEEAKE--NRIAFSKLKV-- 63
           LN+  C+  E +                        I+      +    R+  SK     
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 64  -LILD---YLPTLTSF---C--------------LENYTLEFPSLE--RVSMTH------ 94
            L+L          +F   C              L   T    SL+   +++T       
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 95  ---CPNMKTFS--HGILSTPKLHKVQVTEKEEGELHHWEG------NKLNSTIQKCYE-- 141
                + +       +L+T       + E     L  W+       +KL + I+      
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 142 EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLN 201
           E   +R M + +LS FP                               + IP  LL  + 
Sbjct: 367 EPAEYRKM-FDRLSVFP------------------------PS-----AHIPTILLSLI- 395

Query: 202 NLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIEL 261
              W      D I+          +K H+           L++    K+    T   I +
Sbjct: 396 ---W-----FDVIKSD---VMVVVNKLHK---------YSLVE----KQPKEST---ISI 428

Query: 262 PELQHLTIQNCPDM----ETFISNSVVHVTTDNKEPQKLTSEE---NFLLAHQVQPLFDE 314
           P +         +      + + +  +  T D+ +      ++   + +  H       E
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 315 KVS-FPR----LRWLELSGLHKVQH---LWKENDESNKAFANLESLE--ISE-CSKLQKL 363
           +++ F       R+LE     K++H    W  +         L+  +  I +   K ++L
Sbjct: 489 RMTLFRMVFLDFRFLE----QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 364 VPPSWH-LENLEA-LEVSKCHGLINLLTFSTSESLVN 398
           V      L  +E  L  SK   L+ +   +  E++  
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 63/425 (14%), Positives = 121/425 (28%), Gaps = 130/425 (30%)

Query: 33  NVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEF--PSLERV 90
            VS   ++   +    EE  +    F + +VL ++Y      F +     E   PS+   
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQ---KFVE-EVLRINY-----KFLMSPIKTEQRQPSMMTR 110

Query: 91  SMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDME 150
                 + + ++          K  V+  +     + +       +++   E+   R  +
Sbjct: 111 MYIEQRD-RLYN----DNQVFAKYNVSRLQP----YLK-------LRQALLEL---RPAK 151

Query: 151 YLQLSYFPHLKEIWHG------QALPVSFFNNLARLVVDDCTNMSSAIPANLLRCL-NNL 203
            + +           G        +        A  V              +   +   +
Sbjct: 152 NVLI----------DGVLGSGKTWV--------ALDVCLS---------YKVQCKMDFKI 184

Query: 204 QWLEVRNCDSIEEVL-HLE----------EQNADKEHRGPLFPKLYGLRLIDLPKLKRFC 252
            WL ++NC+S E VL  L+             +D      L        L  L K K + 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLF 312
           N    ++ L  +Q+           F  +  + +TT  K         +FL A     + 
Sbjct: 245 N---CLLVLLNVQNAKA-----WNAFNLSCKILLTTRFK------QVTDFLSAATTTHIS 290

Query: 313 DEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLEN 372
            +  S           L          DE          L+     + Q L P       
Sbjct: 291 LDHHS---------MTLTP--------DEVKSLLLK--YLDC----RPQDL-PR------ 320

Query: 373 LEALEVSKCHGL-INLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVG----EEAKDCNV 427
               EV   +   ++++  S  + L         +C  +  II+  +      E +    
Sbjct: 321 ----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-- 374

Query: 428 FKELS 432
           F  LS
Sbjct: 375 FDRLS 379

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 27/238 (11%), Positives = 65/238 (27%), Gaps = 38/238 (15%)

Query: 167 QALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC----DSIEEVLHLEE 222
             L  +  ++L  L +D C+  ++    +++     ++ L +          + +  L +
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189

Query: 223 QNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNS 282
            N   E       +   +   DL  + R C           L  + + +   +       
Sbjct: 190 HNTSLEVLNFYMTEFAKISPKDLETIARNC---------RSLVSVKVGDFEIL------- 233

Query: 283 VVHVTTDNKEPQKLTS--EENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEND 340
                      +   +  E      ++   + ++ ++    R L   GL  +        
Sbjct: 234 -----ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM------GP 282

Query: 341 ESNKAFA----NLESLEISECSKL-QKLVPPSWHLENLEALEVSKCHGLINLLTFSTS 393
                       +  L++       +          NLE LE     G   L   +  
Sbjct: 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY 340

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	453
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.86
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.86
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.85
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.85
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.85
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.84
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.83
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.83
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.82
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.82
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.81
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.81
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.81
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.77
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.77
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.77
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.77
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.76
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.76
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.75
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.74
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.67
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.67
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.67
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.66
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.65
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.65
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.64
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.64
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.63
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.62
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.62
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.61
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.6
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.59
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.58
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.55
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.55
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.54
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.53
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.52
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.51
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.51
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.51
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.51
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.49
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.46
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.45
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.45
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.43
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.42
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.4
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.4
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.38
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.38
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.35
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.34
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.29
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.26
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.2
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.1
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.99
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.99
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.99
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.97
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.97
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.95
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.94
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.91
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.91
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.9
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.87
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.84
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.83
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.8
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.78
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.77
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.77
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.72
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.56
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.55
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.49
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.44
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.36
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.33
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.31
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.28
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.28
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.25
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.2
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.16
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.13
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.11
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.96
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.81
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.81
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.78
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.63
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.62
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.59
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.57
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.86
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.79
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.83
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.55
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	83.47

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=1.7e-23  Score=218.00  Aligned_cols=338  Identities=11%  Similarity=0.090  Sum_probs=172.8

Q ss_pred             cccccccceeeccccccccc------------------cccccccc--cCCCcceEeecCCCCccccccCccCCCCcceE
Q 012933           55 RIAFSKLKVLILDYLPTLTS------------------FCLENYTL--EFPSLERVSMTHCPNMKTFSHGILSTPKLHKV  114 (453)
Q Consensus        55 ~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L  114 (453)
                      ...+++|++|+++++. +++                  ++..  ..  .+++|++|++++|.....+|..+..+++|++|
T Consensus       202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~--l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  278 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED--LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI  278 (636)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred             HhcccCCCEEECcCCc-cccccccccccccccchhcccCchh--hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence            3347888888888854 666                  4444  45  78888888888887677788888888888888


Q ss_pred             EeccccccccccccCCccchhHH-HHHHhhcC------CCCccEEEEeeCCCCccccc--CCCCCcCccCCCcEEEecCC
Q 012933          115 QVTEKEEGELHHWEGNKLNSTIQ-KCYEEMIG------FRDMEYLQLSYFPHLKEIWH--GQALPVSFFNNLARLVVDDC  185 (453)
Q Consensus       115 ~l~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~------~~~L~~L~l~~~~~l~~~~~--~~~l~~~~l~~L~~L~l~~c  185 (453)
                      +++++..+             .. .++..+..      +++|++|+++++. +..++.  ..    ..+++|++|+++++
T Consensus       279 ~Ls~n~~l-------------~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l----~~l~~L~~L~L~~N  340 (636)
T 4eco_A          279 NVACNRGI-------------SGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSL----QKMKKLGMLECLYN  340 (636)
T ss_dssp             ECTTCTTS-------------CHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHH----TTCTTCCEEECCSC
T ss_pred             ECcCCCCC-------------ccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhh----ccCCCCCEEeCcCC
Confidence            88865311             11 23333322      2556666665554 333333  11    23555555555554


Q ss_pred             CCccccCchhHHhhcCCCcEEEeccCccchhhhcc-ccc--------------ccccCCCCC-CCCccceeeeccCCCcc
Q 012933          186 TNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHL-EEQ--------------NADKEHRGP-LFPKLYGLRLIDLPKLK  249 (453)
Q Consensus       186 ~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~-~~~--------------~~~~~~~~~-~~~~L~~L~L~~~~~l~  249 (453)
                      . +++.+|  .+..+++|+.|+++++. +..++.. ...              ..+...... .+++|++|++.++.--.
T Consensus       341 ~-l~g~ip--~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~  416 (636)
T 4eco_A          341 Q-LEGKLP--AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS  416 (636)
T ss_dssp             C-CEEECC--CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             c-Cccchh--hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCC
Confidence            3 332223  24445555555555432 2222110 000              000000000 01245555555443211


Q ss_pred             eeccCCCccc-------CCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccc-cccccccCCCc
Q 012933          250 RFCNFTGNII-------ELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQP-LFDEKVSFPRL  321 (453)
Q Consensus       250 ~~~~~~~~~~-------~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~l~~L  321 (453)
                      .   .+..+.       .+++|+.|+++++. ++.++...  +..+++|+.|+++++.--.++..... ..+....+++|
T Consensus       417 ~---~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~--~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L  490 (636)
T 4eco_A          417 V---DGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKEL--FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL  490 (636)
T ss_dssp             T---TTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHH--HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGC
T ss_pred             c---chhhhcccccccccCCCCCEEECcCCc-cCcCCHHH--HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCc
Confidence            1   112222       44566666666543 23333321  33455666666666532211110000 00001122377


Q ss_pred             CEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccC------cccccccCCCcccc
Q 012933          322 RWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKC------HGLINLLTFSTSES  395 (453)
Q Consensus       322 ~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c------~~l~~l~~~~~~~~  395 (453)
                      ++|++++| .++.++...+.  ..+++|+.|++++ +.++.+|..+..+++|++|+++++      .-...+|.  ....
T Consensus       491 ~~L~Ls~N-~l~~lp~~~~~--~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~  564 (636)
T 4eco_A          491 TSIDLRFN-KLTKLSDDFRA--TTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITL  564 (636)
T ss_dssp             CEEECCSS-CCCBCCGGGST--TTCTTCCEEECCS-SCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGG
T ss_pred             cEEECcCC-cCCccChhhhh--ccCCCcCEEECCC-CCCCCcChhhhcCCCCCEEECCCCcccccCcccccChH--HHhc
Confidence            77777776 55555543310  1677777777777 456667777777777777777432      22233332  3456


Q ss_pred             cCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933          396 LVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE  440 (453)
Q Consensus       396 l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~  440 (453)
                      +++|++|++++|.- +++        +..  ..+.|+.|+++++|
T Consensus       565 l~~L~~L~Ls~N~l-~~i--------p~~--~~~~L~~L~Ls~N~  598 (636)
T 4eco_A          565 CPSLTQLQIGSNDI-RKV--------NEK--ITPNISVLDIKDNP  598 (636)
T ss_dssp             CSSCCEEECCSSCC-CBC--------CSC--CCTTCCEEECCSCT
T ss_pred             CCCCCEEECCCCcC-Ccc--------CHh--HhCcCCEEECcCCC
Confidence            77777777777763 222        222  22788888888874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=1.9e-22  Score=209.23  Aligned_cols=86  Identities=14%  Similarity=0.065  Sum_probs=49.2

Q ss_pred             cCcccccceEEeccccchhhh-hcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc-c
Q 012933           23 VGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK-T  100 (453)
Q Consensus        23 ~~~~~~L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~  100 (453)
                      ++.+++|++|++++| .++.+ |..+..        +++|++|+++++ .++..+... ...+++|++|++++|.-.. .
T Consensus        76 ~~~l~~L~~L~Ls~n-~l~~~~p~~~~~--------l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~  144 (606)
T 3vq2_A           76 WHGLHHLSNLILTGN-PIQSFSPGSFSG--------LTSLENLVAVET-KLASLESFP-IGQLITLKKLNVAHNFIHSCK  144 (606)
T ss_dssp             TTTCTTCCEEECTTC-CCCCCCTTSSTT--------CTTCCEEECTTS-CCCCSSSSC-CTTCTTCCEEECCSSCCCCCC
T ss_pred             hhchhhcCEeECCCC-cccccChhhcCC--------cccCCEEEccCC-ccccccccc-cCCCCCCCEEeCCCCccccee
Confidence            444555555555554 34433 333333        666666666663 243333221 4567777777777764222 4


Q ss_pred             cccCccCCCCcceEEeccc
Q 012933          101 FSHGILSTPKLHKVQVTEK  119 (453)
Q Consensus       101 ~~~~~~~~~~L~~L~l~~~  119 (453)
                      +|..+..+++|++|+++++
T Consensus       145 lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A          145 LPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             CCGGGGTCTTCCEEECCSS
T ss_pred             chHhHhhcCCCCEEEccCC
Confidence            5667777888888887764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=8.2e-24  Score=225.22  Aligned_cols=343  Identities=16%  Similarity=0.006  Sum_probs=193.4

Q ss_pred             ccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933           20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK   99 (453)
Q Consensus        20 ~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~   99 (453)
                      ..+++.+++|++|++++|...+.+|. ++.        +++|++|+++++. +++.... ....+++|++|++++|....
T Consensus       193 ~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~--------l~~L~~L~Ls~n~-l~~~~~~-~l~~l~~L~~L~Ls~n~l~~  261 (768)
T 3rgz_A          193 DVDVSRCVNLEFLDVSSNNFSTGIPF-LGD--------CSALQHLDISGNK-LSGDFSR-AISTCTELKLLNISSNQFVG  261 (768)
T ss_dssp             CCBCTTCTTCCEEECCSSCCCSCCCB-CTT--------CCSCCEEECCSSC-CCSCHHH-HTTTCSSCCEEECCSSCCEE
T ss_pred             cCCcccCCcCCEEECcCCcCCCCCcc-ccc--------CCCCCEEECcCCc-CCCcccH-HHhcCCCCCEEECCCCcccC
Confidence            34446677777777777643333333 444        6777777777643 3322111 14456677777777664333


Q ss_pred             ccccCccCCCCcceEEecccc--------------ccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCccccc
Q 012933          100 TFSHGILSTPKLHKVQVTEKE--------------EGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWH  165 (453)
Q Consensus       100 ~~~~~~~~~~~L~~L~l~~~~--------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  165 (453)
                      .+|..  .+++|++|+++++.              ++..+++.++   .....++..+..+++|++|+++++.-...++.
T Consensus       262 ~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n---~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~  336 (768)
T 3rgz_A          262 PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN---HFYGAVPPFFGSCSLLESLALSSNNFSGELPM  336 (768)
T ss_dssp             SCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS---EEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred             ccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC---cCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence            33332  56666666666532              1111111111   01112333444556666666655542112222


Q ss_pred             CCCCCcCccCCCcEEEecCCCCccccCchhHHhhcC-CCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeecc
Q 012933          166 GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLN-NLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLID  244 (453)
Q Consensus       166 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  244 (453)
                      ..   ...+++|++|++++|. +++..|.. +..++ +|+.|+++++.-...++.        ......+++|++|++.+
T Consensus       337 ~~---l~~l~~L~~L~Ls~n~-l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~--------~~~~~~~~~L~~L~L~~  403 (768)
T 3rgz_A          337 DT---LLKMRGLKVLDLSFNE-FSGELPES-LTNLSASLLTLDLSSNNFSGPILP--------NLCQNPKNTLQELYLQN  403 (768)
T ss_dssp             HH---HTTCTTCCEEECCSSE-EEECCCTT-HHHHTTTCSEEECCSSEEEEECCT--------TTTCSTTCCCCEEECCS
T ss_pred             HH---HhcCCCCCEEeCcCCc-cCccccHH-HHhhhcCCcEEEccCCCcCCCcCh--------hhhhcccCCccEEECCC
Confidence            10   1235566666666553 33233333 34444 666666665432211111        01111136788888887


Q ss_pred             CCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEE
Q 012933          245 LPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWL  324 (453)
Q Consensus       245 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L  324 (453)
                      +.-...   .+..+..+++|+.|++++|..-...|..   +..+++|+.|+++++.-..      ...+.++.+++|++|
T Consensus       404 n~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~L~~n~l~~------~~p~~~~~l~~L~~L  471 (768)
T 3rgz_A          404 NGFTGK---IPPTLSNCSELVSLHLSFNYLSGTIPSS---LGSLSKLRDLKLWLNMLEG------EIPQELMYVKTLETL  471 (768)
T ss_dssp             SEEEEE---CCGGGGGCTTCCEEECCSSEEESCCCGG---GGGCTTCCEEECCSSCCCS------CCCGGGGGCTTCCEE
T ss_pred             Cccccc---cCHHHhcCCCCCEEECcCCcccCcccHH---HhcCCCCCEEECCCCcccC------cCCHHHcCCCCceEE
Confidence            753323   3467788889999999887533333433   6778888999888874221      011235577889999


Q ss_pred             eecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEE
Q 012933          325 ELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMI  404 (453)
Q Consensus       325 ~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i  404 (453)
                      ++++| .++......+   ..+++|++|++++|.-...+|.++..+++|++|++++|.-...+|.  ....+++|++|++
T Consensus       472 ~L~~N-~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L  545 (768)
T 3rgz_A          472 ILDFN-DLTGEIPSGL---SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDL  545 (768)
T ss_dssp             ECCSS-CCCSCCCGGG---GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEEC
T ss_pred             EecCC-cccCcCCHHH---hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEEC
Confidence            99888 4443333333   7888999999998664447777888889999999988644335543  4567888999988


Q ss_pred             cccch
Q 012933          405 ADCKM  409 (453)
Q Consensus       405 ~~C~~  409 (453)
                      ++|+-
T Consensus       546 s~N~l  550 (768)
T 3rgz_A          546 NTNLF  550 (768)
T ss_dssp             CSSEE
T ss_pred             CCCcc
Confidence            87763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=6.8e-23  Score=217.95  Aligned_cols=63  Identities=21%  Similarity=0.372  Sum_probs=46.3

Q ss_pred             cccccccceeeccccccccc------------------cccccccc--cCCCcceEeecCCCCccccccCccCCCCcceE
Q 012933           55 RIAFSKLKVLILDYLPTLTS------------------FCLENYTL--EFPSLERVSMTHCPNMKTFSHGILSTPKLHKV  114 (453)
Q Consensus        55 ~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L  114 (453)
                      ...+++|++|+++++. +++                  +|..  ..  .+++|++|++++|.....+|..+..+++|++|
T Consensus       444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~--l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L  520 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEE--LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL  520 (876)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred             HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChh--hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence            3347888888888743 655                  4443  44  78888888888887677788778888888888


Q ss_pred             Eecccc
Q 012933          115 QVTEKE  120 (453)
Q Consensus       115 ~l~~~~  120 (453)
                      +++++.
T Consensus       521 ~Ls~N~  526 (876)
T 4ecn_A          521 NIACNR  526 (876)
T ss_dssp             ECTTCT
T ss_pred             ECcCCC
Confidence            888764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=1.6e-23  Score=222.97  Aligned_cols=357  Identities=15%  Similarity=0.055  Sum_probs=209.9

Q ss_pred             cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc
Q 012933           23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS  102 (453)
Q Consensus        23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  102 (453)
                      ++.+++|++|++++|. +...+.. .        .+++|++|+++++. ++.....  ...+++|++|++++|.-...+|
T Consensus       174 ~~~l~~L~~L~Ls~n~-l~~~~~~-~--------~l~~L~~L~Ls~n~-l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~  240 (768)
T 3rgz_A          174 SDGCGELKHLAISGNK-ISGDVDV-S--------RCVNLEFLDVSSNN-FSTGIPF--LGDCSALQHLDISGNKLSGDFS  240 (768)
T ss_dssp             TTCCTTCCEEECCSSE-EESCCBC-T--------TCTTCCEEECCSSC-CCSCCCB--CTTCCSCCEEECCSSCCCSCHH
T ss_pred             hccCCCCCEEECCCCc-ccccCCc-c--------cCCcCCEEECcCCc-CCCCCcc--cccCCCCCEEECcCCcCCCccc
Confidence            6789999999999985 4433221 2        38999999999954 4443333  5689999999999986544778


Q ss_pred             cCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEe
Q 012933          103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV  182 (453)
Q Consensus       103 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l  182 (453)
                      ..+..+++|++|++++|.-...              ++.  ..+++|++|+++++.-...++...   ...+++|++|++
T Consensus       241 ~~l~~l~~L~~L~Ls~n~l~~~--------------~~~--~~l~~L~~L~L~~n~l~~~ip~~~---~~~~~~L~~L~L  301 (768)
T 3rgz_A          241 RAISTCTELKLLNISSNQFVGP--------------IPP--LPLKSLQYLSLAENKFTGEIPDFL---SGACDTLTGLDL  301 (768)
T ss_dssp             HHTTTCSSCCEEECCSSCCEES--------------CCC--CCCTTCCEEECCSSEEEESCCCCS---CTTCTTCSEEEC
T ss_pred             HHHhcCCCCCEEECCCCcccCc--------------cCc--cccCCCCEEECcCCccCCccCHHH---HhhcCcCCEEEC
Confidence            8888999999999997632110              000  134555555555554111222211   011355555555


Q ss_pred             cCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcc--cccc--------------cccCCCCCCCCccceeeeccCC
Q 012933          183 DDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHL--EEQN--------------ADKEHRGPLFPKLYGLRLIDLP  246 (453)
Q Consensus       183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~--~~~~--------------~~~~~~~~~~~~L~~L~L~~~~  246 (453)
                      ++|. +++..|. .+..+++|++|+++++.-...++..  ....              ..........++|++|++.++.
T Consensus       302 s~n~-l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~  379 (768)
T 3rgz_A          302 SGNH-FYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN  379 (768)
T ss_dssp             CSSE-EEECCCG-GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred             cCCc-CCCccch-HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence            5542 2222222 2444555555555544221111110  0000              0000000111256666665543


Q ss_pred             CcceeccCCCcccC--CCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEE
Q 012933          247 KLKRFCNFTGNIIE--LPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWL  324 (453)
Q Consensus       247 ~l~~~~~~~~~~~~--l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L  324 (453)
                      --..+   +..+..  +++|+.|++++|.....+|..   +..+++|+.|+++++.--.      ...+.++.+++|++|
T Consensus       380 l~~~~---~~~~~~~~~~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~~L~~L  447 (768)
T 3rgz_A          380 FSGPI---LPNLCQNPKNTLQELYLQNNGFTGKIPPT---LSNCSELVSLHLSFNYLSG------TIPSSLGSLSKLRDL  447 (768)
T ss_dssp             EEEEC---CTTTTCSTTCCCCEEECCSSEEEEECCGG---GGGCTTCCEEECCSSEEES------CCCGGGGGCTTCCEE
T ss_pred             cCCCc---ChhhhhcccCCccEEECCCCccccccCHH---HhcCCCCCEEECcCCcccC------cccHHHhcCCCCCEE
Confidence            22111   223333  667777777776543334433   6667788888887763211      011235677889999


Q ss_pred             eecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccc-cccCCCcccccCCcceEE
Q 012933          325 ELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLI-NLLTFSTSESLVNLGRMM  403 (453)
Q Consensus       325 ~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~~~l~~L~~L~  403 (453)
                      ++++|. +.......+   ..+++|++|++++|.-...+|..+..+++|++|++++|. ++ .+|.  ....+++|++|+
T Consensus       448 ~L~~n~-l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~--~~~~l~~L~~L~  520 (768)
T 3rgz_A          448 KLWLNM-LEGEIPQEL---MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPK--WIGRLENLAILK  520 (768)
T ss_dssp             ECCSSC-CCSCCCGGG---GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCG--GGGGCTTCCEEE
T ss_pred             ECCCCc-ccCcCCHHH---cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc-cCCcCCh--HHhcCCCCCEEE
Confidence            998884 443322333   688999999999965444677778889999999998854 44 4443  456788999999


Q ss_pred             EcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933          404 IADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE  440 (453)
Q Consensus       404 i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~  440 (453)
                      +++|...        +..+..+..++.|++|++++++
T Consensus       521 L~~N~l~--------~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          521 LSNNSFS--------GNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             CCSSCCE--------EECCGGGGGCTTCCEEECCSSE
T ss_pred             CCCCccc--------CcCCHHHcCCCCCCEEECCCCc
Confidence            9988743        2334556678888888888664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.89  E-value=1.6e-21  Score=202.24  Aligned_cols=85  Identities=14%  Similarity=0.123  Sum_probs=42.7

Q ss_pred             ccCcccccceEEeccccchhhh-hcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccc
Q 012933           22 QVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT  100 (453)
Q Consensus        22 ~~~~~~~L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  100 (453)
                      .++.+++|++|++++| .+..+ |..+..        +++|++|+++++ .++..... ....+++|++|++++|. ++.
T Consensus        52 ~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~--------l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-i~~  119 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRC-QIYWIHEDTFQS--------QHRLDTLVLTAN-PLIFMAET-ALSGPKALKHLFFIQTG-ISS  119 (606)
T ss_dssp             TSTTCTTCSEEECTTC-CCCEECTTTTTT--------CTTCCEEECTTC-CCSEECTT-TTSSCTTCCEEECTTSC-CSC
T ss_pred             HhccCccceEEECCCC-ccceeChhhccC--------ccccCeeeCCCC-cccccChh-hhcccccccEeeccccC-ccc
Confidence            3566677777777775 34444 333333        566666666653 23333221 13345555555555543 333


Q ss_pred             c-ccCccCCCCcceEEecc
Q 012933          101 F-SHGILSTPKLHKVQVTE  118 (453)
Q Consensus       101 ~-~~~~~~~~~L~~L~l~~  118 (453)
                      + +..+..+++|++|++++
T Consensus       120 l~~~~~~~l~~L~~L~L~~  138 (606)
T 3t6q_A          120 IDFIPLHNQKTLESLYLGS  138 (606)
T ss_dssp             GGGSCCTTCTTCCEEECCS
T ss_pred             CCcchhccCCcccEEECCC
Confidence            2 33444455555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=3.5e-23  Score=215.62  Aligned_cols=328  Identities=13%  Similarity=0.100  Sum_probs=225.4

Q ss_pred             cCcccccceEEeccccchhh------------------hhcccc--cccccccccccccceeeccccccccccccccccc
Q 012933           23 VGIPSSLVNLNVSRCDKIEE------------------IIRHVG--EEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL   82 (453)
Q Consensus        23 ~~~~~~L~~L~L~~c~~l~~------------------i~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~   82 (453)
                      ++.+++|++|+|+++. +..                  +|..++  +        +++|++|+++++.-...++..  ..
T Consensus       202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~--------l~~L~~L~L~~n~l~~~~p~~--l~  270 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDN--------LKDLTDVEVYNCPNLTKLPTF--LK  270 (636)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGG--------CTTCCEEEEECCTTCSSCCTT--TT
T ss_pred             HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcc--------cCCCCEEEecCCcCCccChHH--Hh
Confidence            7889999999999985 665                  887766  6        899999999987655555533  66


Q ss_pred             cCCCcceEeecCCCCcc--ccccCccCC------CCcceEEeccccccccccccCCccchhHHHHHH--hhcCCCCccEE
Q 012933           83 EFPSLERVSMTHCPNMK--TFSHGILST------PKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE--EMIGFRDMEYL  152 (453)
Q Consensus        83 ~l~~L~~L~l~~c~~l~--~~~~~~~~~------~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L  152 (453)
                      .+++|++|++++|..++  .+|..+..+      ++|++|+++++.               +..++.  .+..+++|++|
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~---------------l~~ip~~~~l~~l~~L~~L  335 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN---------------LKTFPVETSLQKMKKLGML  335 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC---------------CSSCCCHHHHTTCTTCCEE
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc---------------CCccCchhhhccCCCCCEE
Confidence            88999999999986455  477766665      889999998642               224454  56677888888


Q ss_pred             EEeeCCCCc-ccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCC-CcEEEeccCccchhhhccccc-------
Q 012933          153 QLSYFPHLK-EIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNN-LQWLEVRNCDSIEEVLHLEEQ-------  223 (453)
Q Consensus       153 ~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~-L~~L~l~~~~~l~~~~~~~~~-------  223 (453)
                      +++++. +. .++ ..    ..+++|++|+++++. ++. +|.. +..+++ |+.|+++++. +..++..-+.       
T Consensus       336 ~L~~N~-l~g~ip-~~----~~l~~L~~L~L~~N~-l~~-lp~~-l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~  405 (636)
T 4eco_A          336 ECLYNQ-LEGKLP-AF----GSEIKLASLNLAYNQ-ITE-IPAN-FCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMS  405 (636)
T ss_dssp             ECCSCC-CEEECC-CC----EEEEEESEEECCSSE-EEE-CCTT-SEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEE
T ss_pred             eCcCCc-Cccchh-hh----CCCCCCCEEECCCCc-ccc-ccHh-hhhhcccCcEEEccCCc-CcccchhhhhcccCccC
Confidence            888776 43 544 22    446777777777753 433 2433 666777 7777777653 3333221000       


Q ss_pred             ------ccccCCCCC----------CCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCccccc
Q 012933          224 ------NADKEHRGP----------LFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVT  287 (453)
Q Consensus       224 ------~~~~~~~~~----------~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  287 (453)
                            +.+......          ..++|++|++.++. ++.++  ...+..+++|+.|+++++. +..++...  +..
T Consensus       406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp--~~~~~~l~~L~~L~Ls~N~-l~~i~~~~--~~~  479 (636)
T 4eco_A          406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFP--KELFSTGSPLSSINLMGNM-LTEIPKNS--LKD  479 (636)
T ss_dssp             EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCC--THHHHTTCCCSEEECCSSC-CSBCCSSS--SEE
T ss_pred             EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCC--HHHHccCCCCCEEECCCCC-CCCcCHHH--hcc
Confidence                  001111101          11589999998874 44432  2234569999999999965 44666543  332


Q ss_pred             C-------CCcccccccccccccccccccccccccc--cCCCcCEEeecCCCCcceecccCCcccccCCCccceeecc--
Q 012933          288 T-------DNKEPQKLTSEENFLLAHQVQPLFDEKV--SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISE--  356 (453)
Q Consensus       288 l-------~~L~~L~l~~~~~~~~~~~l~~~~~~~~--~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~--  356 (453)
                      .       ++|+.|+++++.--.+       .+...  .+++|++|++++| .++.++...    ..+++|+.|++++  
T Consensus       480 ~~~~~~~l~~L~~L~Ls~N~l~~l-------p~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~----~~l~~L~~L~Ls~N~  547 (636)
T 4eco_A          480 ENENFKNTYLLTSIDLRFNKLTKL-------SDDFRATTLPYLVGIDLSYN-SFSKFPTQP----LNSSTLKGFGIRNQR  547 (636)
T ss_dssp             TTEECTTGGGCCEEECCSSCCCBC-------CGGGSTTTCTTCCEEECCSS-CCSSCCCGG----GGCSSCCEEECCSCB
T ss_pred             ccccccccCCccEEECcCCcCCcc-------ChhhhhccCCCcCEEECCCC-CCCCcChhh----hcCCCCCEEECCCCc
Confidence            2       3899999998743221       12333  7899999999999 676676554    6899999999954  


Q ss_pred             ----CCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccch
Q 012933          357 ----CSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKM  409 (453)
Q Consensus       357 ----c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~  409 (453)
                          +.-.+.+|..+..+++|++|++++ +.++.+|.. +.   ++|++|++++++-
T Consensus       548 ~ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~ip~~-~~---~~L~~L~Ls~N~l  599 (636)
T 4eco_A          548 DAQGNRTLREWPEGITLCPSLTQLQIGS-NDIRKVNEK-IT---PNISVLDIKDNPN  599 (636)
T ss_dssp             CTTCCBCCCCCCTTGGGCSSCCEEECCS-SCCCBCCSC-CC---TTCCEEECCSCTT
T ss_pred             ccccCcccccChHHHhcCCCCCEEECCC-CcCCccCHh-Hh---CcCCEEECcCCCC
Confidence                444567888899999999999988 456888764 33   8999999999974

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.88  E-value=4.4e-21  Score=198.98  Aligned_cols=159  Identities=13%  Similarity=0.053  Sum_probs=111.3

Q ss_pred             cccCcccccceEEeccccchhhh-hcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933           21 FQVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK   99 (453)
Q Consensus        21 ~~~~~~~~L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~   99 (453)
                      .+.+-.+++++|+++++ .++.+ |..+.+        +++|++|+++++ .++..... ....+++|++|++++|.-..
T Consensus        27 iP~~l~~~l~~L~Ls~n-~i~~~~~~~~~~--------l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~   95 (606)
T 3t6q_A           27 IPGTLPNSTECLEFSFN-VLPTIQNTTFSR--------LINLTFLDLTRC-QIYWIHED-TFQSQHRLDTLVLTANPLIF   95 (606)
T ss_dssp             CCTTSCTTCCEEECTTC-CCSEECTTTSTT--------CTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTCCCSE
T ss_pred             CcCCCCCcCcEEEccCC-ccCcCChhHhcc--------CccceEEECCCC-ccceeChh-hccCccccCeeeCCCCcccc
Confidence            34444678999999997 67777 444554        999999999995 45554333 25679999999999986444


Q ss_pred             ccccCccCCCCcceEEeccccccccccccCCccchhHHHH-HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCc
Q 012933          100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA  178 (453)
Q Consensus       100 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~  178 (453)
                      ..|..+..+++|++|+++++.-               ..+ +..+..+++|++|+++++. +..+.... +  ..+++|+
T Consensus        96 ~~~~~~~~l~~L~~L~L~~n~i---------------~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~  156 (606)
T 3t6q_A           96 MAETALSGPKALKHLFFIQTGI---------------SSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK-G--FPTEKLK  156 (606)
T ss_dssp             ECTTTTSSCTTCCEEECTTSCC---------------SCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT-T--CCCTTCC
T ss_pred             cChhhhcccccccEeeccccCc---------------ccCCcchhccCCcccEEECCCCc-ccccCccc-c--cCCcccC
Confidence            5577788899999999996521               111 2335667899999999886 44432221 1  1278999


Q ss_pred             EEEecCCCCccccCchhHHhhcCCCc--EEEeccC
Q 012933          179 RLVVDDCTNMSSAIPANLLRCLNNLQ--WLEVRNC  211 (453)
Q Consensus       179 ~L~l~~c~~l~~~~~~~~l~~l~~L~--~L~l~~~  211 (453)
                      +|+++++. ++.. +...+..+++|+  .|+++++
T Consensus       157 ~L~L~~n~-l~~~-~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          157 VLDFQNNA-IHYL-SKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             EEECCSSC-CCEE-CHHHHHTTTTCCSEEEECTTC
T ss_pred             EEEcccCc-cccc-ChhhhhhhcccceeEEecCCC
Confidence            99999864 4444 344577888888  7777665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.88  E-value=1.8e-21  Score=195.42  Aligned_cols=149  Identities=14%  Similarity=0.239  Sum_probs=84.3

Q ss_pred             ccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933           20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK   99 (453)
Q Consensus        20 ~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~   99 (453)
                      +..+..+++|++|++++| .++.++. +..        +++|++|+++++ .++..+.   ...+++|++|++++| .++
T Consensus        61 l~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~--------l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~  125 (466)
T 1o6v_A           61 IDGVEYLNNLTQINFSNN-QLTDITP-LKN--------LTKLVDILMNNN-QIADITP---LANLTNLTGLTLFNN-QIT  125 (466)
T ss_dssp             CTTGGGCTTCCEEECCSS-CCCCCGG-GTT--------CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCC
T ss_pred             CcchhhhcCCCEEECCCC-ccCCchh-hhc--------cccCCEEECCCC-ccccChh---hcCCCCCCEEECCCC-CCC
Confidence            444566777777777776 4666654 444        777777777764 3444332   456777788887776 355


Q ss_pred             ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcE
Q 012933          100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR  179 (453)
Q Consensus       100 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~  179 (453)
                      .++. +..+++|++|+++++.-               ..++ .+..+++|++|.+++..  .....     ...+++|++
T Consensus       126 ~~~~-~~~l~~L~~L~l~~n~l---------------~~~~-~~~~l~~L~~L~l~~~~--~~~~~-----~~~l~~L~~  181 (466)
T 1o6v_A          126 DIDP-LKNLTNLNRLELSSNTI---------------SDIS-ALSGLTSLQQLSFGNQV--TDLKP-----LANLTTLER  181 (466)
T ss_dssp             CCGG-GTTCTTCSEEEEEEEEE---------------CCCG-GGTTCTTCSEEEEEESC--CCCGG-----GTTCTTCCE
T ss_pred             CChH-HcCCCCCCEEECCCCcc---------------CCCh-hhccCCcccEeecCCcc--cCchh-----hccCCCCCE
Confidence            5543 56677777777776421               1111 23445666666664321  11111     133566666


Q ss_pred             EEecCCCCccccCchhHHhhcCCCcEEEeccC
Q 012933          180 LVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC  211 (453)
Q Consensus       180 L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~  211 (453)
                      |+++++. ++..   ..+..+++|++|+++++
T Consensus       182 L~l~~n~-l~~~---~~l~~l~~L~~L~l~~n  209 (466)
T 1o6v_A          182 LDISSNK-VSDI---SVLAKLTNLESLIATNN  209 (466)
T ss_dssp             EECCSSC-CCCC---GGGGGCTTCSEEECCSS
T ss_pred             EECcCCc-CCCC---hhhccCCCCCEEEecCC
Confidence            6666653 3322   12555666666666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=8.8e-22  Score=189.86  Aligned_cols=308  Identities=16%  Similarity=0.166  Sum_probs=194.9

Q ss_pred             cccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCc
Q 012933           19 AYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNM   98 (453)
Q Consensus        19 ~~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l   98 (453)
                      ....+..+++|++|+++++ .+..++. +..        +++|++|+++++ .++.++.   ...+++|++|++++| .+
T Consensus        36 ~~~~~~~l~~L~~L~l~~~-~i~~~~~-~~~--------~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i  100 (347)
T 4fmz_A           36 DVVTQEELESITKLVVAGE-KVASIQG-IEY--------LTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KI  100 (347)
T ss_dssp             SEECHHHHTTCSEEECCSS-CCCCCTT-GGG--------CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CC
T ss_pred             CcccchhcccccEEEEeCC-ccccchh-hhh--------cCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cc
Confidence            3445567888999999986 5666653 333        888999999885 4555543   457889999999887 46


Q ss_pred             cccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCc
Q 012933           99 KTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA  178 (453)
Q Consensus        99 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~  178 (453)
                      +.++ .+..+++|++|+++++.-               ..++. +..+++|++|+++++.....++. .    ..+++|+
T Consensus       101 ~~~~-~~~~l~~L~~L~l~~n~i---------------~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~----~~l~~L~  158 (347)
T 4fmz_A          101 TDIS-ALQNLTNLRELYLNEDNI---------------SDISP-LANLTKMYSLNLGANHNLSDLSP-L----SNMTGLN  158 (347)
T ss_dssp             CCCG-GGTTCTTCSEEECTTSCC---------------CCCGG-GTTCTTCCEEECTTCTTCCCCGG-G----TTCTTCC
T ss_pred             cCch-HHcCCCcCCEEECcCCcc---------------cCchh-hccCCceeEEECCCCCCcccccc-h----hhCCCCc
Confidence            6664 467788888888886521               11111 45678888888888765554332 1    4578888


Q ss_pred             EEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcc
Q 012933          179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNI  258 (453)
Q Consensus       179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~  258 (453)
                      +|++++|. +....+   +..+++|+.|+++++. +.+++...           .+++|++|.+.++. ++.+    ..+
T Consensus       159 ~L~l~~~~-~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~-----------~l~~L~~L~l~~n~-l~~~----~~~  217 (347)
T 4fmz_A          159 YLTVTESK-VKDVTP---IANLTDLYSLSLNYNQ-IEDISPLA-----------SLTSLHYFTAYVNQ-ITDI----TPV  217 (347)
T ss_dssp             EEECCSSC-CCCCGG---GGGCTTCSEEECTTSC-CCCCGGGG-----------GCTTCCEEECCSSC-CCCC----GGG
T ss_pred             EEEecCCC-cCCchh---hccCCCCCEEEccCCc-cccccccc-----------CCCccceeecccCC-CCCC----chh
Confidence            88888875 333322   6678888888888763 33332211           22778888887753 3332    236


Q ss_pred             cCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceeccc
Q 012933          259 IELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKE  338 (453)
Q Consensus       259 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~  338 (453)
                      ..+++|+.|++++|. ++..+.    +..+++|+.|+++++.--.        ++....+++|++|++++| .++.++  
T Consensus       218 ~~~~~L~~L~l~~n~-l~~~~~----~~~l~~L~~L~l~~n~l~~--------~~~~~~l~~L~~L~l~~n-~l~~~~--  281 (347)
T 4fmz_A          218 ANMTRLNSLKIGNNK-ITDLSP----LANLSQLTWLEIGTNQISD--------INAVKDLTKLKMLNVGSN-QISDIS--  281 (347)
T ss_dssp             GGCTTCCEEECCSSC-CCCCGG----GTTCTTCCEEECCSSCCCC--------CGGGTTCTTCCEEECCSS-CCCCCG--
T ss_pred             hcCCcCCEEEccCCc-cCCCcc----hhcCCCCCEEECCCCccCC--------ChhHhcCCCcCEEEccCC-ccCCCh--
Confidence            777888888888764 333322    4456677777777652211        123456677777777777 455542  


Q ss_pred             CCcccccCCCccceeeccCCCccc-cCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933          339 NDESNKAFANLESLEISECSKLQK-LVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       339 ~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                      .+   ..+++|+.|++++|. ++. .+..+..+++|++|++++|+ +++++.   ...+++|++|++++|+
T Consensus       282 ~~---~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          282 VL---NNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV  344 (347)
T ss_dssp             GG---GGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred             hh---cCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence            22   567777777777754 333 33345567777777777643 555543   3456777777777665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.88  E-value=7.7e-21  Score=190.15  Aligned_cols=337  Identities=13%  Similarity=0.072  Sum_probs=212.2

Q ss_pred             cccccceEEeccccchhhh-hcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc
Q 012933           25 IPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH  103 (453)
Q Consensus        25 ~~~~L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  103 (453)
                      ..++|++|+++++ .++.+ |..+.+        +++|++|+++++.-...++. .....+++|++|++++|.-....|.
T Consensus        28 l~~~l~~L~Ls~n-~i~~~~~~~~~~--------l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~~~   97 (455)
T 3v47_A           28 LPAHVNYVDLSLN-SIAELNETSFSR--------LQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYNQFLQLETG   97 (455)
T ss_dssp             CCTTCCEEECCSS-CCCEECTTTTSS--------CTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTCTTCEECTT
T ss_pred             CCCccCEEEecCC-ccCcCChhHhcc--------CccccEEECcCCcccceECc-ccccccccCCEEeCCCCccCccChh
Confidence            3578999999997 56666 444444        89999999998543223322 2356789999999999864344577


Q ss_pred             CccCCCCcceEEeccccccccccccCCccchhHHHHHHh--hcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEE
Q 012933          104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE--MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLV  181 (453)
Q Consensus       104 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~  181 (453)
                      .+..+++|++|++++|.-              ....+..  +..+++|++|+++++. +..+.... + ...+++|++|+
T Consensus        98 ~~~~l~~L~~L~L~~n~l--------------~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~-~~~l~~L~~L~  160 (455)
T 3v47_A           98 AFNGLANLEVLTLTQCNL--------------DGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPAS-F-FLNMRRFHVLD  160 (455)
T ss_dssp             TTTTCTTCCEEECTTSCC--------------BTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCG-G-GGGCTTCCEEE
T ss_pred             hccCcccCCEEeCCCCCC--------------CccccCcccccCcccCCEEECCCCc-cCccCccc-c-cCCCCcccEEe
Confidence            788899999999996521              1112222  5667899999998886 43332211 0 14578999999


Q ss_pred             ecCCCCccccCchhHHhhc--CCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccC--------------
Q 012933          182 VDDCTNMSSAIPANLLRCL--NNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL--------------  245 (453)
Q Consensus       182 l~~c~~l~~~~~~~~l~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~--------------  245 (453)
                      ++++. ++...+.. +..+  .+|+.|+++++. +..+................ ++|++|++.++              
T Consensus       161 L~~n~-l~~~~~~~-l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~  236 (455)
T 3v47_A          161 LTFNK-VKSICEED-LLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAI  236 (455)
T ss_dssp             CTTCC-BSCCCTTT-SGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred             CCCCc-ccccChhh-hhccccccccccccccCc-ccccchhhcccccccccccc-ceeeeEecCCCcccccchhhhhccc
Confidence            98864 44443322 4433  455555555532 22211100000000000011 34555555443              


Q ss_pred             -------------CCccee---------ccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccc
Q 012933          246 -------------PKLKRF---------CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFL  303 (453)
Q Consensus       246 -------------~~l~~~---------~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~  303 (453)
                                   ......         ..........++|+.|+++++... ..+...  +..+++|+.|+++++.--.
T Consensus       237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~--~~~l~~L~~L~Ls~n~l~~  313 (455)
T 3v47_A          237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSV--FSHFTDLEQLTLAQNEINK  313 (455)
T ss_dssp             TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC-EECTTT--TTTCTTCCEEECTTSCCCE
T ss_pred             cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc-ccchhh--cccCCCCCEEECCCCcccc
Confidence                         211110         000001113468999999887544 433333  7788899999998874322


Q ss_pred             ccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCcccc-CCCCCCCCCCCEEecccCc
Q 012933          304 LAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSKCH  382 (453)
Q Consensus       304 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~  382 (453)
                      .      ....+..+++|++|++++| .++.+....+   ..+++|++|++++| .++.+ |..+..+++|++|++++ +
T Consensus       314 ~------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N  381 (455)
T 3v47_A          314 I------DDNAFWGLTHLLKLNLSQN-FLGSIDSRMF---ENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDT-N  381 (455)
T ss_dssp             E------CTTTTTTCTTCCEEECCSS-CCCEECGGGG---TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-S
T ss_pred             c------ChhHhcCcccCCEEECCCC-ccCCcChhHh---cCcccCCEEECCCC-cccccChhhccccccccEEECCC-C
Confidence            1      1123557899999999999 6788876666   78999999999995 56666 56788899999999988 6


Q ss_pred             ccccccCCCcccccCCcceEEEcccc
Q 012933          383 GLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       383 ~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                      +++.++.. ....+++|++|++++++
T Consensus       382 ~l~~~~~~-~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          382 QLKSVPDG-IFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred             ccccCCHh-HhccCCcccEEEccCCC
Confidence            78887764 45688999999997543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.87  E-value=1e-20  Score=198.86  Aligned_cols=86  Identities=19%  Similarity=0.171  Sum_probs=47.8

Q ss_pred             cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCC--CccccCCCCCCCCCCCEEecccCcccccccCCCccc
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECS--KLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSE  394 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~--~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~  394 (453)
                      .+++|++|++++| .+..+....|   ..+++|+.|+++++.  .+..+|..+..+++|++|++++ ++++.++.. ...
T Consensus       428 ~l~~L~~L~Ls~n-~l~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~-N~l~~i~~~-~~~  501 (680)
T 1ziw_A          428 GLENIFEIYLSYN-KYLQLTRNSF---ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN-NNIANINDD-MLE  501 (680)
T ss_dssp             TCTTCCEEECCSC-SEEECCTTTT---TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS-SCCCCCCTT-TTT
T ss_pred             CcccccEEecCCC-CcceeChhhh---hcCcccccchhccccccccccCCcccccCCCCCEEECCC-CCCCcCChh-hhc
Confidence            4555666666555 3444444444   455566666665532  1234455566667777777765 456655542 334


Q ss_pred             ccCCcceEEEcccc
Q 012933          395 SLVNLGRMMIADCK  408 (453)
Q Consensus       395 ~l~~L~~L~i~~C~  408 (453)
                      .+++|++|+++++.
T Consensus       502 ~l~~L~~L~Ls~N~  515 (680)
T 1ziw_A          502 GLEKLEILDLQHNN  515 (680)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             cccccCEEeCCCCC
Confidence            56667777766654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.87  E-value=2.8e-21  Score=198.85  Aligned_cols=239  Identities=18%  Similarity=0.150  Sum_probs=126.6

Q ss_pred             ccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccc----------ccccccCCCCCCCCccceeee
Q 012933          173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLE----------EQNADKEHRGPLFPKLYGLRL  242 (453)
Q Consensus       173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~L~~L~L  242 (453)
                      .+++|++|+++++. ++.+ +.. +..+ +|++|+++++. +..++...          +...........+++|++|++
T Consensus       280 ~l~~L~~L~l~~~~-l~~l-~~~-~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l  354 (570)
T 2z63_A          280 CLTNVSSFSLVSVT-IERV-KDF-SYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL  354 (570)
T ss_dssp             GGTTCSEEEEESCE-ECSC-CBC-CSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEEC
T ss_pred             CcCcccEEEecCcc-chhh-hhh-hccC-CccEEeeccCc-ccccCcccccccCEEeCcCCccccccccccCCCCCEEeC
Confidence            36777777777653 3332 222 3444 66666666653 22221100          000000000012355666666


Q ss_pred             ccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcC
Q 012933          243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLR  322 (453)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~  322 (453)
                      .++. ++.....+..+..+++|+.|++++|. +..++..   +..+++|+.|+++++......     ....+..+++|+
T Consensus       355 ~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~---~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~l~~L~  424 (570)
T 2z63_A          355 SRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN---FLGLEQLEHLDFQHSNLKQMS-----EFSVFLSLRNLI  424 (570)
T ss_dssp             CSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE---EETCTTCCEEECTTSEEESCT-----TSCTTTTCTTCC
T ss_pred             cCCc-cCccccccccccccCccCEEECCCCc-ccccccc---ccccCCCCEEEccCCcccccc-----chhhhhcCCCCC
Confidence            5543 22211112345556666666666653 2333322   445566777777665321100     011234667888


Q ss_pred             EEeecCCCCcceecccCCcccccCCCccceeeccCCCc-cccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcce
Q 012933          323 WLELSGLHKVQHLWKENDESNKAFANLESLEISECSKL-QKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGR  401 (453)
Q Consensus       323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~  401 (453)
                      +|++++| .+.......+   ..+++|++|++++|.-. ..+|..+..+++|++|++++| +++.++.. ....+++|++
T Consensus       425 ~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~  498 (570)
T 2z63_A          425 YLDISHT-HTRVAFNGIF---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQV  498 (570)
T ss_dssp             EEECTTS-CCEECCTTTT---TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCE
T ss_pred             EEeCcCC-cccccchhhh---hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChh-hhhcccCCCE
Confidence            8888877 4555555555   67788888888885432 246777777788888888774 45555332 3456778888


Q ss_pred             EEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933          402 MMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE  440 (453)
Q Consensus       402 L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~  440 (453)
                      |++++|. ++.       ..+..+..++.|+.++++++|
T Consensus       499 L~l~~n~-l~~-------~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          499 LNMASNQ-LKS-------VPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             EECCSSC-CSC-------CCTTTTTTCTTCCEEECCSSC
T ss_pred             EeCCCCc-CCC-------CCHHHhhcccCCcEEEecCCc
Confidence            8887774 211       112234566777777777654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.87  E-value=2.8e-21  Score=198.09  Aligned_cols=126  Identities=17%  Similarity=0.167  Sum_probs=67.7

Q ss_pred             ccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecc
Q 012933          258 IIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWK  337 (453)
Q Consensus       258 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  337 (453)
                      +..+++|+.|++++| +++.+|..   +..+++|+.|+++++.--.+        +. ..+++|++|++++| .++.++ 
T Consensus       383 ~~~l~~L~~L~Ls~N-~l~~lp~~---~~~~~~L~~L~Ls~N~l~~l--------~~-~~~~~L~~L~Ls~N-~l~~~~-  447 (549)
T 2z81_A          383 LLTLKNLTSLDISRN-TFHPMPDS---CQWPEKMRFLNLSSTGIRVV--------KT-CIPQTLEVLDVSNN-NLDSFS-  447 (549)
T ss_dssp             GGGCTTCCEEECTTC-CCCCCCSC---CCCCTTCCEEECTTSCCSCC--------CT-TSCTTCSEEECCSS-CCSCCC-
T ss_pred             hhcCCCCCEEECCCC-CCccCChh---hcccccccEEECCCCCcccc--------cc-hhcCCceEEECCCC-Chhhhc-
Confidence            444555555555554 23333332   33444555555555421110        00 11245666666665 343332 


Q ss_pred             cCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933          338 ENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       338 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                            ..+++|++|+++++ .++.+|. ...+++|++|++++ ++++.++.. ....+++|++|++++++
T Consensus       448 ------~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          448 ------LFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISR-NQLKSVPDG-IFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             ------CCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCS-SCCCCCCTT-GGGGCTTCCEEECCSSC
T ss_pred             ------ccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCC-CccCCcCHH-HHhcCcccCEEEecCCC
Confidence                  46677777777773 5666665 34567777777766 456665542 34566777777776544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.86  E-value=1.1e-20  Score=195.96  Aligned_cols=156  Identities=18%  Similarity=0.120  Sum_probs=93.0

Q ss_pred             CCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccC
Q 012933          260 ELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEN  339 (453)
Q Consensus       260 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  339 (453)
                      .+++|+.|+++++......+     +..+++|+.|+++++.--..    .........+++|++|++++| .++.++ ..
T Consensus       326 ~l~~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~ls~n~l~~~----~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~  394 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISFK-----KVALPSLSYLDLSRNALSFS----GCCSYSDLGTNSLRHLDLSFN-GAIIMS-AN  394 (606)
T ss_dssp             CCSSCCEEEEESCSSCEECC-----CCCCTTCCEEECCSSCEEEE----EECCHHHHCCSCCCEEECCSC-SEEEEC-CC
T ss_pred             CCCccceeeccCCcCccchh-----hccCCCCCEEECcCCccCCC----cchhhhhccCCcccEeECCCC-ccccch-hh
Confidence            55555556555554443331     33455666666665521110    000122346677888888777 466666 33


Q ss_pred             CcccccCCCccceeeccCCCccccC--CCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhc
Q 012933          340 DESNKAFANLESLEISECSKLQKLV--PPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQ  417 (453)
Q Consensus       340 ~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~  417 (453)
                      +   ..+++|+.|++++|. ++.++  ..+..+++|++|++++|. +...... ....+++|++|++++|..-..     
T Consensus       395 ~---~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~-----  463 (606)
T 3vq2_A          395 F---MGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDG-IFLGLTSLNTLKMAGNSFKDN-----  463 (606)
T ss_dssp             C---TTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSC-CEECCTT-TTTTCTTCCEEECTTCEEGGG-----
T ss_pred             c---cCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCCC-CCccchh-hhcCCCCCCEEECCCCcCCCc-----
Confidence            3   677888888888853 44443  356778888888887754 4443332 355678888888888763211     


Q ss_pred             cCCccCCCceeccccchhhhhh
Q 012933          418 VGEEAKDCNVFKELSCETMSKN  439 (453)
Q Consensus       418 ~~~~~~~~~~~~~l~~l~l~~~  439 (453)
                        ..+..+..++.|+.|+++++
T Consensus       464 --~~~~~~~~l~~L~~L~Ls~n  483 (606)
T 3vq2_A          464 --TLSNVFANTTNLTFLDLSKC  483 (606)
T ss_dssp             --EECSCCTTCTTCCEEECTTS
T ss_pred             --chHHhhccCCCCCEEECCCC
Confidence              12344567889999988887

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=2.5e-21  Score=206.01  Aligned_cols=323  Identities=12%  Similarity=0.085  Sum_probs=186.8

Q ss_pred             cccccceEEeccccchhhhhcccccccccccccccccceeeccccccccc--cccc-----cccccCCCcceEeecCCCC
Q 012933           25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTS--FCLE-----NYTLEFPSLERVSMTHCPN   97 (453)
Q Consensus        25 ~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~-----~~~~~l~~L~~L~l~~c~~   97 (453)
                      .+++|++|+|++|...+.+|..+.+        +++|++|+++++..++.  ++..     .....+++|+.|++++|. 
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~--------L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-  559 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYD--------LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-  559 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGG--------CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-
T ss_pred             cCCCCCEEECcCCCCCccChHHHhC--------CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-
Confidence            6677777777776556666665555        67777777776443443  2221     012345577777777753 


Q ss_pred             cccccc--CccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccC
Q 012933           98 MKTFSH--GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFN  175 (453)
Q Consensus        98 l~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~  175 (453)
                      +..+|.  .+..+++|+.|+++++.               +..++ .+..+++|++|+++++. +..++...    ..++
T Consensus       560 L~~ip~~~~l~~L~~L~~L~Ls~N~---------------l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l----~~l~  618 (876)
T 4ecn_A          560 LEEFPASASLQKMVKLGLLDCVHNK---------------VRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDF----CAFT  618 (876)
T ss_dssp             CCBCCCHHHHTTCTTCCEEECTTSC---------------CCBCC-CCCTTSEESEEECCSSC-CSCCCTTS----CEEC
T ss_pred             CCccCChhhhhcCCCCCEEECCCCC---------------cccch-hhcCCCcceEEECcCCc-cccchHHH----hhcc
Confidence            556666  66667777777776532               11223 44556677777777665 33444332    3456


Q ss_pred             C-CcEEEecCCCCccccCchhHHhhcC--CCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceec
Q 012933          176 N-LARLVVDDCTNMSSAIPANLLRCLN--NLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC  252 (453)
Q Consensus       176 ~-L~~L~l~~c~~l~~~~~~~~l~~l~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~  252 (453)
                      + |++|+++++. ++.+ |. .+..++  +|+.|+++++.-...++...     ........++|++|++.++. ++.+ 
T Consensus       619 ~~L~~L~Ls~N~-L~~l-p~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~-----~~l~~~~~~~L~~L~Ls~N~-L~~l-  688 (876)
T 4ecn_A          619 DQVEGLGFSHNK-LKYI-PN-IFNAKSVYVMGSVDFSYNKIGSEGRNIS-----CSMDDYKGINASTVTLSYNE-IQKF-  688 (876)
T ss_dssp             TTCCEEECCSSC-CCSC-CS-CCCTTCSSCEEEEECCSSCTTTTSSSCS-----SCTTTCCCCCEEEEECCSSC-CCSC-
T ss_pred             ccCCEEECcCCC-CCcC-ch-hhhccccCCCCEEECcCCcCCCccccch-----hhhccccCCCcCEEEccCCc-CCcc-
Confidence            6 7777777654 4433 32 233333  37777777653222111100     00000011477888877764 3333 


Q ss_pred             cCCCc-ccCCCCccEEeeecCCCCceeccCCcccc-------cCCCcccccccccccccccccccccccccc--cCCCcC
Q 012933          253 NFTGN-IIELPELQHLTIQNCPDMETFISNSVVHV-------TTDNKEPQKLTSEENFLLAHQVQPLFDEKV--SFPRLR  322 (453)
Q Consensus       253 ~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~--~l~~L~  322 (453)
                        +.. +..+++|+.|+++++ .+..+|...  +.       .+++|+.|++++|.--.+       .+.+.  .+++|+
T Consensus       689 --p~~~~~~l~~L~~L~Ls~N-~L~~ip~~~--~~~~~~~l~nl~~L~~L~Ls~N~L~~l-------p~~l~~~~l~~L~  756 (876)
T 4ecn_A          689 --PTELFATGSPISTIILSNN-LMTSIPENS--LKPKDGNYKNTYLLTTIDLRFNKLTSL-------SDDFRATTLPYLS  756 (876)
T ss_dssp             --CHHHHHTTCCCSEEECCSC-CCSCCCTTS--SSCTTSCCTTGGGCCEEECCSSCCCCC-------CGGGSTTTCTTCC
T ss_pred             --CHHHHccCCCCCEEECCCC-cCCccChHH--hccccccccccCCccEEECCCCCCccc-------hHHhhhccCCCcC
Confidence              223 346788888888875 344555432  22       223788888877632211       12233  678888


Q ss_pred             EEeecCCCCcceecccCCcccccCCCccceeecc------CCCccccCCCCCCCCCCCEEecccCcccccccCCCccccc
Q 012933          323 WLELSGLHKVQHLWKENDESNKAFANLESLEISE------CSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESL  396 (453)
Q Consensus       323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~------c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l  396 (453)
                      .|++++| .++.++...    ..+++|+.|++++      +.-...+|..+.++++|++|++++| .+..+|.. +.   
T Consensus       757 ~L~Ls~N-~L~~lp~~l----~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~---  826 (876)
T 4ecn_A          757 NMDVSYN-CFSSFPTQP----LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LT---  826 (876)
T ss_dssp             EEECCSS-CCSSCCCGG----GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CC---
T ss_pred             EEEeCCC-CCCccchhh----hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hc---
Confidence            8888887 566665443    6788888888866      3334567777778888888888774 45777663 32   


Q ss_pred             CCcceEEEcccch
Q 012933          397 VNLGRMMIADCKM  409 (453)
Q Consensus       397 ~~L~~L~i~~C~~  409 (453)
                      ++|+.|++++|+.
T Consensus       827 ~~L~~LdLs~N~l  839 (876)
T 4ecn_A          827 PQLYILDIADNPN  839 (876)
T ss_dssp             SSSCEEECCSCTT
T ss_pred             CCCCEEECCCCCC
Confidence            6788888888863

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.86  E-value=2.4e-20  Score=191.15  Aligned_cols=60  Identities=18%  Similarity=0.140  Sum_probs=30.8

Q ss_pred             CCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933          369 HLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE  440 (453)
Q Consensus       369 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~  440 (453)
                      .+++|++|++++ ++++.+|.   ...+++|++|+++++. ++       +..+..+..++.|+.++++++|
T Consensus       449 ~l~~L~~L~Ls~-N~l~~ip~---~~~l~~L~~L~Ls~N~-l~-------~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          449 FLPRLQELYISR-NKLKTLPD---ASLFPVLLVMKISRNQ-LK-------SVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             CCTTCCEEECCS-SCCSSCCC---GGGCTTCCEEECCSSC-CC-------CCCTTGGGGCTTCCEEECCSSC
T ss_pred             cCChhcEEECCC-CccCcCCC---cccCccCCEEecCCCc-cC-------CcCHHHHhcCcccCEEEecCCC
Confidence            345555555544 24444443   1234555555555553 11       1112234567788888887775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.86  E-value=2.5e-20  Score=179.65  Aligned_cols=298  Identities=13%  Similarity=0.167  Sum_probs=219.9

Q ss_pred             hhhhhcccchhhcccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCC
Q 012933            7 YFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPS   86 (453)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~   86 (453)
                      -.+++.++ ....+..++.+++|++|++++| .++.++. +..        +++|++|+++++ .++.++   ....+++
T Consensus        47 ~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~-~~~--------l~~L~~L~L~~n-~i~~~~---~~~~l~~  111 (347)
T 4fmz_A           47 TKLVVAGE-KVASIQGIEYLTNLEYLNLNGN-QITDISP-LSN--------LVKLTNLYIGTN-KITDIS---ALQNLTN  111 (347)
T ss_dssp             SEEECCSS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTT--------CTTCCEEECCSS-CCCCCG---GGTTCTT
T ss_pred             cEEEEeCC-ccccchhhhhcCCccEEEccCC-ccccchh-hhc--------CCcCCEEEccCC-cccCch---HHcCCCc
Confidence            34445533 2344566788999999999998 6777766 554        899999999995 566553   2568999


Q ss_pred             cceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccC
Q 012933           87 LERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHG  166 (453)
Q Consensus        87 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  166 (453)
                      |++|++++|. +..++. +..+++|++|++++|..+...               ..+..+++|++|+++++. +..+.. 
T Consensus       112 L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~---------------~~~~~l~~L~~L~l~~~~-~~~~~~-  172 (347)
T 4fmz_A          112 LRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDL---------------SPLSNMTGLNYLTVTESK-VKDVTP-  172 (347)
T ss_dssp             CSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCC---------------GGGTTCTTCCEEECCSSC-CCCCGG-
T ss_pred             CCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccc---------------cchhhCCCCcEEEecCCC-cCCchh-
Confidence            9999999975 666655 778999999999987543221               124568999999999987 443332 


Q ss_pred             CCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCC
Q 012933          167 QALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP  246 (453)
Q Consensus       167 ~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  246 (453)
                          ...+++|++|++++|. ++...+   +..+++|+.++++++ .+..+...          . .+++|++|++.++.
T Consensus       173 ----~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~----------~-~~~~L~~L~l~~n~  232 (347)
T 4fmz_A          173 ----IANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVN-QITDITPV----------A-NMTRLNSLKIGNNK  232 (347)
T ss_dssp             ----GGGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEEECCSS-CCCCCGGG----------G-GCTTCCEEECCSSC
T ss_pred             ----hccCCCCCEEEccCCc-cccccc---ccCCCccceeecccC-CCCCCchh----------h-cCCcCCEEEccCCc
Confidence                2458999999999975 444422   778999999999986 34433221          1 23899999999874


Q ss_pred             CcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEee
Q 012933          247 KLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLEL  326 (453)
Q Consensus       247 ~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l  326 (453)
                       ++.+    ..+..+++|+.|++++|. ++.++  .  +..+++|+.|+++++.--.        ++....+++|++|++
T Consensus       233 -l~~~----~~~~~l~~L~~L~l~~n~-l~~~~--~--~~~l~~L~~L~l~~n~l~~--------~~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          233 -ITDL----SPLANLSQLTWLEIGTNQ-ISDIN--A--VKDLTKLKMLNVGSNQISD--------ISVLNNLSQLNSLFL  294 (347)
T ss_dssp             -CCCC----GGGTTCTTCCEEECCSSC-CCCCG--G--GTTCTTCCEEECCSSCCCC--------CGGGGGCTTCSEEEC
T ss_pred             -cCCC----cchhcCCCCCEEECCCCc-cCCCh--h--HhcCCCcCEEEccCCccCC--------ChhhcCCCCCCEEEC
Confidence             4443    237889999999999974 44442  1  6678899999999873222        134567899999999


Q ss_pred             cCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCc
Q 012933          327 SGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCH  382 (453)
Q Consensus       327 ~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~  382 (453)
                      ++| .++......+   ..+++|+.|++++|+ ++.++. +..+++|++|++++++
T Consensus       295 ~~n-~l~~~~~~~l---~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          295 NNN-QLGNEDMEVI---GGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             CSS-CCCGGGHHHH---HTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred             cCC-cCCCcChhHh---hccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence            999 5666655555   789999999999965 777666 7789999999998853

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.86  E-value=2.3e-20  Score=187.37  Aligned_cols=328  Identities=14%  Similarity=0.165  Sum_probs=196.2

Q ss_pred             CcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc
Q 012933           24 GIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH  103 (453)
Q Consensus        24 ~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  103 (453)
                      ..+++++.|+++++ .++.++. +..        +++|++|+++++ .++.++.   ...+++|++|++++|. +..++.
T Consensus        43 ~~l~~l~~L~l~~~-~i~~l~~-~~~--------l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~  107 (466)
T 1o6v_A           43 TDLDQVTTLQADRL-GIKSIDG-VEY--------LNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNNQ-IADITP  107 (466)
T ss_dssp             HHHHTCCEEECCSS-CCCCCTT-GGG--------CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCGG
T ss_pred             hHhccccEEecCCC-CCccCcc-hhh--------hcCCCEEECCCC-ccCCchh---hhccccCCEEECCCCc-cccChh
Confidence            44789999999997 5777764 333        899999999985 4666543   5689999999999974 666655


Q ss_pred             CccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEec
Q 012933          104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVD  183 (453)
Q Consensus       104 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~  183 (453)
                       +..+++|++|++++|. +              ..++ .+..+++|++|+++++. +..++.     ...+++|++|++.
T Consensus       108 -~~~l~~L~~L~L~~n~-l--------------~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~l~  164 (466)
T 1o6v_A          108 -LANLTNLTGLTLFNNQ-I--------------TDID-PLKNLTNLNRLELSSNT-ISDISA-----LSGLTSLQQLSFG  164 (466)
T ss_dssp             -GTTCTTCCEEECCSSC-C--------------CCCG-GGTTCTTCSEEEEEEEE-ECCCGG-----GTTCTTCSEEEEE
T ss_pred             -hcCCCCCCEEECCCCC-C--------------CCCh-HHcCCCCCCEEECCCCc-cCCChh-----hccCCcccEeecC
Confidence             7889999999999752 1              1111 15678999999999986 444332     1458999999997


Q ss_pred             CCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCC
Q 012933          184 DCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPE  263 (453)
Q Consensus       184 ~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~  263 (453)
                      +  .+....   .+..+++|+.|+++++. +..+....           .+++|++|++.++. ++.+    ..+..+++
T Consensus       165 ~--~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~l~-----------~l~~L~~L~l~~n~-l~~~----~~~~~l~~  222 (466)
T 1o6v_A          165 N--QVTDLK---PLANLTTLERLDISSNK-VSDISVLA-----------KLTNLESLIATNNQ-ISDI----TPLGILTN  222 (466)
T ss_dssp             E--SCCCCG---GGTTCTTCCEEECCSSC-CCCCGGGG-----------GCTTCSEEECCSSC-CCCC----GGGGGCTT
T ss_pred             C--cccCch---hhccCCCCCEEECcCCc-CCCChhhc-----------cCCCCCEEEecCCc-cccc----ccccccCC
Confidence            5  333332   27889999999999874 44432211           12566666666553 2221    12444555


Q ss_pred             ccEEeeecCCCCceeccCCcccccCCCcccccccccccccccc---------------cccccccccccCCCcCEEeecC
Q 012933          264 LQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAH---------------QVQPLFDEKVSFPRLRWLELSG  328 (453)
Q Consensus       264 L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---------------~l~~~~~~~~~l~~L~~L~l~~  328 (453)
                      |+.|++++|. ++.++  .  +..+++|+.|+++++..-....               .+. ..+....+++|++|++++
T Consensus       223 L~~L~l~~n~-l~~~~--~--l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~L~~  296 (466)
T 1o6v_A          223 LDELSLNGNQ-LKDIG--T--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNE  296 (466)
T ss_dssp             CCEEECCSSC-CCCCG--G--GGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCS
T ss_pred             CCEEECCCCC-cccch--h--hhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccC-ccccccCCCccCeEEcCC
Confidence            5555555542 22221  1  3344455555555442111000               000 011133455666666666


Q ss_pred             CCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933          329 LHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       329 ~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                      | .++.++.  +   ..+++|+.|++++| .++.++. +..+++|++|++++| .+++++   ....+++|++|++++|.
T Consensus       297 n-~l~~~~~--~---~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          297 N-QLEDISP--I---SNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             S-CCSCCGG--G---GGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC
T ss_pred             C-cccCchh--h---cCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc
Confidence            5 3444332  2   56666666666664 3444433 455666666666653 455542   23456667777776665


Q ss_pred             hhHHHHhhccCCccCCCceeccccchhhhhh
Q 012933          409 MIEQIIQLQVGEEAKDCNVFKELSCETMSKN  439 (453)
Q Consensus       409 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~  439 (453)
                      --          .+.....+++|+.++++++
T Consensus       365 l~----------~~~~~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          365 IS----------DLTPLANLTRITQLGLNDQ  385 (466)
T ss_dssp             CC----------BCGGGTTCTTCCEEECCCE
T ss_pred             cC----------ccchhhcCCCCCEEeccCC
Confidence            21          1222556777777777665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.85  E-value=8.4e-20  Score=196.28  Aligned_cols=287  Identities=13%  Similarity=0.115  Sum_probs=154.4

Q ss_pred             cccccceEEeccccchhhh-hcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc
Q 012933           25 IPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH  103 (453)
Q Consensus        25 ~~~~L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  103 (453)
                      .++++++|+|+++ .++.+ +..+..        +++|++|+++++.....+... ....+++|++|++++|.-....|.
T Consensus        22 lp~~l~~LdLs~N-~i~~i~~~~~~~--------l~~L~~LdLs~n~~~~~i~~~-~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           22 VLNTTERLLLSFN-YIRTVTASSFPF--------LEQLQLLELGSQYTPLTIDKE-AFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             SCTTCCEEEEESC-CCCEECSSSCSS--------CCSCSEEEECTTCCCCEECTT-TTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCcCEEECCCC-cCCccChhHCcc--------cccCeEEeCCCCCCccccCHH-HhcCCCCCCEEECCCCcCcccCHh
Confidence            5678888888886 56655 343443        788888888886444444222 245678888888888753334466


Q ss_pred             CccCCCCcceEEeccccccccccccCCccchhHHHHHH--hhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEE
Q 012933          104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE--EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLV  181 (453)
Q Consensus       104 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~  181 (453)
                      .+..+++|++|++++|.-.              ..++.  .+..+++|++|+++++. +..+.....+  ..+++|++|+
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~--------------~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~--~~L~~L~~L~  154 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLS--------------DAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSF--GKLNSLKSID  154 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCS--------------SCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGG--GTCSSCCEEE
T ss_pred             HccCCcccCEeeCcCCCCC--------------cccccCccccccCCCCEEECCCCc-ccccccchhH--hhCCCCCEEE
Confidence            7777888888888865211              00111  13456777777777765 3322211101  3467777777


Q ss_pred             ecCCCCccccCchhHHhhc--CCCcEEEeccCccchhhhc-------------cc-----cc-----------c------
Q 012933          182 VDDCTNMSSAIPANLLRCL--NNLQWLEVRNCDSIEEVLH-------------LE-----EQ-----------N------  224 (453)
Q Consensus       182 l~~c~~l~~~~~~~~l~~l--~~L~~L~l~~~~~l~~~~~-------------~~-----~~-----------~------  224 (453)
                      ++++. ++...+.. +..+  ++|+.|+++++.-....+.             ..     +.           .      
T Consensus       155 Ls~N~-i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~  232 (844)
T 3j0a_A          155 FSSNQ-IFLVCEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ  232 (844)
T ss_dssp             EESSC-CCCCCSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred             CCCCc-CCeeCHHH-cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence            77653 33332222 3333  4555555544321110000             00     00           0      


Q ss_pred             ------------------cc-----cCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccC
Q 012933          225 ------------------AD-----KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISN  281 (453)
Q Consensus       225 ------------------~~-----~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  281 (453)
                                        ..     ..+..-..++|++|++.++. +..+  .+..+..+++|+.|+++++. +...+..
T Consensus       233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~--~~~~~~~l~~L~~L~L~~n~-i~~~~~~  308 (844)
T 3j0a_A          233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSL--NSRVFETLKDLKVLNLAYNK-INKIADE  308 (844)
T ss_dssp             BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEE--CSCCSSSCCCCCEEEEESCC-CCEECTT
T ss_pred             ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-cccc--ChhhhhcCCCCCEEECCCCc-CCCCChH
Confidence                              00     00000011456667666553 3332  23456677788888887754 3444333


Q ss_pred             CcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeecc
Q 012933          282 SVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISE  356 (453)
Q Consensus       282 ~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~  356 (453)
                      .  +..+++|+.|+++++.--..      ....+..+++|++|+++++ .+..++...|   ..+++|+.|++++
T Consensus       309 ~--~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~---~~l~~L~~L~Ls~  371 (844)
T 3j0a_A          309 A--FYGLDNLQVLNLSYNLLGEL------YSSNFYGLPKVAYIDLQKN-HIAIIQDQTF---KFLEKLQTLDLRD  371 (844)
T ss_dssp             T--TTTCSSCCEEEEESCCCSCC------CSCSCSSCTTCCEEECCSC-CCCCCCSSCS---CSCCCCCEEEEET
T ss_pred             H--hcCCCCCCEEECCCCCCCcc------CHHHhcCCCCCCEEECCCC-CCCccChhhh---cCCCCCCEEECCC
Confidence            3  66677778887777632110      0123445677777777776 5666665555   5666666666666

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=1.2e-19  Score=182.59  Aligned_cols=301  Identities=19%  Similarity=0.205  Sum_probs=164.8

Q ss_pred             cccCcccccceEEeccccchhhhhc-ccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933           21 FQVGIPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK   99 (453)
Q Consensus        21 ~~~~~~~~L~~L~L~~c~~l~~i~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~   99 (453)
                      .+.+..++++.|+++++ .++.++. .+..        +++|++|+++++ .++..... ....+++|++|+++++ +++
T Consensus        26 ip~~~~~~l~~L~L~~n-~l~~~~~~~~~~--------l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l~   93 (477)
T 2id5_A           26 VPEGIPTETRLLDLGKN-RIKTLNQDEFAS--------FPHLEELELNEN-IVSAVEPG-AFNNLFNLRTLGLRSN-RLK   93 (477)
T ss_dssp             CCSCCCTTCSEEECCSS-CCCEECTTTTTT--------CTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCC
T ss_pred             CCCCCCCCCcEEECCCC-ccceECHhHccC--------CCCCCEEECCCC-ccCEeChh-hhhCCccCCEEECCCC-cCC
Confidence            34445678888888886 5666643 3333        788888888874 45554333 2456788888888886 466


Q ss_pred             ccccC-ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCc
Q 012933          100 TFSHG-ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA  178 (453)
Q Consensus       100 ~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~  178 (453)
                      .+|.. +..+++|++|+++++.-.              ...+..+..+++|++|+++++. +..+.... +  ..+++|+
T Consensus        94 ~~~~~~~~~l~~L~~L~Ls~n~i~--------------~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~--~~l~~L~  155 (477)
T 2id5_A           94 LIPLGVFTGLSNLTKLDISENKIV--------------ILLDYMFQDLYNLKSLEVGDND-LVYISHRA-F--SGLNSLE  155 (477)
T ss_dssp             SCCTTSSTTCTTCCEEECTTSCCC--------------EECTTTTTTCTTCCEEEECCTT-CCEECTTS-S--TTCTTCC
T ss_pred             ccCcccccCCCCCCEEECCCCccc--------------cCChhHccccccCCEEECCCCc-cceeChhh-c--cCCCCCC
Confidence            66654 456788888888754211              1112334556778888887765 44333222 2  3467788


Q ss_pred             EEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcc
Q 012933          179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNI  258 (453)
Q Consensus       179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~  258 (453)
                      +|+++++. ++.. +...+..+++|+.|+++++. +..+...        ....+ ++|++|++.++..+..++   ...
T Consensus       156 ~L~l~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~-i~~~~~~--------~~~~l-~~L~~L~l~~~~~~~~~~---~~~  220 (477)
T 2id5_A          156 QLTLEKCN-LTSI-PTEALSHLHGLIVLRLRHLN-INAIRDY--------SFKRL-YRLKVLEISHWPYLDTMT---PNC  220 (477)
T ss_dssp             EEEEESCC-CSSC-CHHHHTTCTTCCEEEEESCC-CCEECTT--------CSCSC-TTCCEEEEECCTTCCEEC---TTT
T ss_pred             EEECCCCc-Cccc-ChhHhcccCCCcEEeCCCCc-CcEeChh--------hcccC-cccceeeCCCCccccccC---ccc
Confidence            88888763 4444 44457777788888777752 3322110        11112 667777777766666542   233


Q ss_pred             cCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceeccc
Q 012933          259 IELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKE  338 (453)
Q Consensus       259 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~  338 (453)
                      ....+|+.|++++|. ++.++...  +..+++|+.|+++++..-...      ...+..+++|++|+++++ .++.+...
T Consensus       221 ~~~~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n-~l~~~~~~  290 (477)
T 2id5_A          221 LYGLNLTSLSITHCN-LTAVPYLA--VRHLVYLRFLNLSYNPISTIE------GSMLHELLRLQEIQLVGG-QLAVVEPY  290 (477)
T ss_dssp             TTTCCCSEEEEESSC-CCSCCHHH--HTTCTTCCEEECCSSCCCEEC------TTSCTTCTTCCEEECCSS-CCSEECTT
T ss_pred             ccCccccEEECcCCc-ccccCHHH--hcCccccCeeECCCCcCCccC------hhhccccccCCEEECCCC-ccceECHH
Confidence            344467777777653 33333221  344445555555544211100      011234455555555554 34444444


Q ss_pred             CCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEeccc
Q 012933          339 NDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSK  380 (453)
Q Consensus       339 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~  380 (453)
                      .|   ..+++|+.|++++ +.++.++.. +..+++|++|++++
T Consensus       291 ~~---~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          291 AF---RGLNYLRVLNVSG-NQLTTLEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             TB---TTCTTCCEEECCS-SCCSCCCGGGBSCGGGCCEEECCS
T ss_pred             Hh---cCcccCCEEECCC-CcCceeCHhHcCCCcccCEEEccC
Confidence            43   4555555555555 234444432 34445555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.85  E-value=3.5e-20  Score=181.64  Aligned_cols=306  Identities=13%  Similarity=0.116  Sum_probs=222.6

Q ss_pred             cccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc-c
Q 012933           25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS-H  103 (453)
Q Consensus        25 ~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~  103 (453)
                      .+++++.|+++++ .++.+|....       ..+++|++|+++++ .++..+.. ....+++|++|+++++. ++.++ .
T Consensus        43 ~l~~l~~l~l~~~-~l~~l~~~~~-------~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~  111 (390)
T 3o6n_A           43 TLNNQKIVTFKNS-TMRKLPAALL-------DSFRQVELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFNA-IRYLPPH  111 (390)
T ss_dssp             GGCCCSEEEEESC-EESEECTHHH-------HHCCCCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred             ccCCceEEEecCC-chhhCChhHh-------cccccCcEEECCCC-cccccChh-hccCCCCcCEEECCCCC-CCcCCHH
Confidence            4689999999997 6888887532       13899999999984 46665443 25678999999999975 55554 4


Q ss_pred             CccCCCCcceEEeccccccccccccCCccchhHHHHHHh-hcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEe
Q 012933          104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE-MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV  182 (453)
Q Consensus       104 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l  182 (453)
                      .+..+++|++|+++++.               +..++.. ...+++|++|+++++. +..+.... +  ..+++|++|++
T Consensus       112 ~~~~l~~L~~L~L~~n~---------------l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~l  172 (390)
T 3o6n_A          112 VFQNVPLLTVLVLERND---------------LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDT-F--QATTSLQNLQL  172 (390)
T ss_dssp             TTTTCTTCCEEECCSSC---------------CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTT-T--SSCTTCCEEEC
T ss_pred             HhcCCCCCCEEECCCCc---------------cCcCCHHHhcCCCCCcEEECCCCc-cCccChhh-c--cCCCCCCEEEC
Confidence            56789999999999652               2233333 3568999999999986 44443322 2  45899999999


Q ss_pred             cCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCC
Q 012933          183 DDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELP  262 (453)
Q Consensus       183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~  262 (453)
                      +++. ++.. +   +..+++|+.|+++++ .+..+.              ..++|++|++.++. ++.++     ...++
T Consensus       173 ~~n~-l~~~-~---~~~l~~L~~L~l~~n-~l~~~~--------------~~~~L~~L~l~~n~-l~~~~-----~~~~~  226 (390)
T 3o6n_A          173 SSNR-LTHV-D---LSLIPSLFHANVSYN-LLSTLA--------------IPIAVEELDASHNS-INVVR-----GPVNV  226 (390)
T ss_dssp             CSSC-CSBC-C---GGGCTTCSEEECCSS-CCSEEE--------------CCSSCSEEECCSSC-CCEEE-----CCCCS
T ss_pred             CCCc-CCcc-c---cccccccceeecccc-cccccC--------------CCCcceEEECCCCe-eeecc-----ccccc
Confidence            9864 4443 2   567899999999885 333321              22689999998864 45442     12357


Q ss_pred             CccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcc
Q 012933          263 ELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDES  342 (453)
Q Consensus       263 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~  342 (453)
                      +|+.|+++++. ++..+    .+..+++|+.|+++++..-..      ....+..+++|++|+++++ .++.++...   
T Consensus       227 ~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n-~l~~~~~~~---  291 (390)
T 3o6n_A          227 ELTILKLQHNN-LTDTA----WLLNYPGLVEVDLSYNELEKI------MYHPFVKMQRLERLYISNN-RLVALNLYG---  291 (390)
T ss_dssp             SCCEEECCSSC-CCCCG----GGGGCTTCSEEECCSSCCCEE------ESGGGTTCSSCCEEECCSS-CCCEEECSS---
T ss_pred             cccEEECCCCC-CcccH----HHcCCCCccEEECCCCcCCCc------ChhHccccccCCEEECCCC-cCcccCccc---
Confidence            99999999875 33332    267788999999998743221      1123457899999999998 688876544   


Q ss_pred             cccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933          343 NKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       343 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                       ..+++|+.|++++| .++.+|..+..+++|++|++++ +.++.++    ...+++|++|++++++
T Consensus       292 -~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~-N~i~~~~----~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          292 -QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH-NSIVTLK----LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             -SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS-SCCCCCC----CCTTCCCSEEECCSSC
T ss_pred             -CCCCCCCEEECCCC-cceecCccccccCcCCEEECCC-CccceeC----chhhccCCEEEcCCCC
Confidence             68899999999995 6888888778889999999988 4577764    3567899999998765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.85  E-value=2.4e-20  Score=189.81  Aligned_cols=157  Identities=15%  Similarity=0.094  Sum_probs=92.8

Q ss_pred             cCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcce-ecc
Q 012933          259 IELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH-LWK  337 (453)
Q Consensus       259 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~  337 (453)
                      ..+++|+.|+++++.--...+..   +..+++|+.|+++++.--.+.    .....+..+++|++|++++| .++. ++.
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~N~l~~l~----~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~  392 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFEN---CGHLTELETLILQMNQLKELS----KIAEMTTQMKSLQQLDISQN-SVSYDEKK  392 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTT---CCCCSSCCEEECCSSCCCBHH----HHHHHHTTCTTCCEEECCSS-CCBCCGGG
T ss_pred             hhCCcccEEEeECCccChhhhhh---hccCCCCCEEEccCCccCccc----cchHHHhhCCCCCEEECCCC-cCCccccc
Confidence            56777888888776533323332   566778888888776322100    00012346778888888877 4555 665


Q ss_pred             cCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhc
Q 012933          338 ENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQ  417 (453)
Q Consensus       338 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~  417 (453)
                      ..+   ..+++|++|++++|.-...+|..+.  ++|++|++++ ++++.+|..  ...+++|++|++++|. ++.+    
T Consensus       393 ~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~-N~l~~ip~~--~~~l~~L~~L~L~~N~-l~~l----  459 (520)
T 2z7x_B          393 GDC---SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHS-NKIKSIPKQ--VVKLEALQELNVASNQ-LKSV----  459 (520)
T ss_dssp             CSC---CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCS-SCCCCCCGG--GGGCTTCCEEECCSSC-CCCC----
T ss_pred             chh---ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCC-Ccccccchh--hhcCCCCCEEECCCCc-CCcc----
Confidence            555   5677777777777543233443332  5777777766 356666542  3367777777777774 3221    


Q ss_pred             cCCccC-CCceeccccchhhhhhH
Q 012933          418 VGEEAK-DCNVFKELSCETMSKNE  440 (453)
Q Consensus       418 ~~~~~~-~~~~~~~l~~l~l~~~~  440 (453)
                          +. .+..++.|++++++++|
T Consensus       460 ----~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          460 ----PDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             ----CTTTTTTCTTCCEEECCSSC
T ss_pred             ----CHHHhccCCcccEEECcCCC
Confidence                11 24456777777777664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.85  E-value=2.5e-20  Score=191.75  Aligned_cols=132  Identities=17%  Similarity=0.147  Sum_probs=80.3

Q ss_pred             ccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecc-cCCcccccCCCccceeeccCCCccccC
Q 012933          286 VTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWK-ENDESNKAFANLESLEISECSKLQKLV  364 (453)
Q Consensus       286 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~  364 (453)
                      ..+++|+.|+++++.....       .+.+..+++|++|++++| .+..... ..+   ..+++|++|++++|.-....|
T Consensus       370 ~~~~~L~~L~l~~n~l~~~-------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~  438 (570)
T 2z63_A          370 FGTTSLKYLDLSFNGVITM-------SSNFLGLEQLEHLDFQHS-NLKQMSEFSVF---LSLRNLIYLDISHTHTRVAFN  438 (570)
T ss_dssp             HTCSCCCEEECCSCSEEEE-------EEEEETCTTCCEEECTTS-EEESCTTSCTT---TTCTTCCEEECTTSCCEECCT
T ss_pred             cccCccCEEECCCCccccc-------cccccccCCCCEEEccCC-ccccccchhhh---hcCCCCCEEeCcCCcccccch
Confidence            3445555555555422111       112445677777777776 3443322 334   677888888888865444455


Q ss_pred             CCCCCCCCCCEEecccCcccc--cccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhh
Q 012933          365 PPSWHLENLEALEVSKCHGLI--NLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKN  439 (453)
Q Consensus       365 ~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~  439 (453)
                      ..+..+++|++|++++|. +.  .+|.  ....+++|++|++++|.--        +..+..+..++.|++|+++++
T Consensus       439 ~~~~~l~~L~~L~l~~n~-l~~~~~p~--~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          439 GIFNGLSSLEVLKMAGNS-FQENFLPD--IFTELRNLTFLDLSQCQLE--------QLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             TTTTTCTTCCEEECTTCE-EGGGEECS--CCTTCTTCCEEECTTSCCC--------EECTTTTTTCTTCCEEECCSS
T ss_pred             hhhhcCCcCcEEECcCCc-Cccccchh--hhhcccCCCEEECCCCccc--------cCChhhhhcccCCCEEeCCCC
Confidence            567778888888887754 43  3442  4567788888888887522        112334556788888888776

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.85  E-value=9.2e-20  Score=191.68  Aligned_cols=237  Identities=15%  Similarity=0.111  Sum_probs=155.2

Q ss_pred             CCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccc
Q 012933          147 RDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNAD  226 (453)
Q Consensus       147 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  226 (453)
                      ++|+.|+++++. +..+.... +  ..+++|++|+++++. +....+...+..+++|+.|+++++. +..+..       
T Consensus       381 ~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-------  447 (680)
T 1ziw_A          381 SPLHILNLTKNK-ISKIESDA-F--SWLGHLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNK-YLQLTR-------  447 (680)
T ss_dssp             SCCCEEECTTSC-CCEECTTT-T--TTCTTCCEEECCSSC-CEEECCSGGGTTCTTCCEEECCSCS-EEECCT-------
T ss_pred             CcCceEECCCCC-CCeEChhh-h--hCCCCCCEEeCCCCc-CccccCcccccCcccccEEecCCCC-cceeCh-------
Confidence            456666666664 33332221 2  346778888887764 3333343456777788888877764 222211       


Q ss_pred             cCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccc
Q 012933          227 KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAH  306 (453)
Q Consensus       227 ~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  306 (453)
                       .... .+++|++|.+.++. ++.+...+..+..+++|+.|+++++. ++.++...  +..+++|+.|+++++.--.+..
T Consensus       448 -~~~~-~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~--~~~l~~L~~L~Ls~N~l~~~~~  521 (680)
T 1ziw_A          448 -NSFA-LVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDM--LEGLEKLEILDLQHNNLARLWK  521 (680)
T ss_dssp             -TTTT-TCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTT--TTTCTTCCEEECCSSCCGGGGS
T ss_pred             -hhhh-cCcccccchhcccc-ccccccCCcccccCCCCCEEECCCCC-CCcCChhh--hccccccCEEeCCCCCccccch
Confidence             0111 23788888888764 22212235678889999999998864 55555544  6778899999998874322111


Q ss_pred             cc-cc-cccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcc
Q 012933          307 QV-QP-LFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHG  383 (453)
Q Consensus       307 ~l-~~-~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~  383 (453)
                      .. .. ....+..+++|++|+++++ .++.++.+.|   ..+++|+.|++++ +.++.+|.. +..+++|++|++++ ++
T Consensus       522 ~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~---~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~  595 (680)
T 1ziw_A          522 HANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVF---KDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NL  595 (680)
T ss_dssp             TTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SC
T ss_pred             hhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHc---ccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-Cc
Confidence            00 00 1112457789999999998 7888888777   8899999999988 678888876 57889999999988 57


Q ss_pred             cccccCCCcccccCCcceEEEcccc
Q 012933          384 LINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       384 l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                      ++.++...+...+++|+++++.+++
T Consensus       596 l~~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          596 ITSVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             CCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred             CCccChhHhcccccccCEEEccCCC
Confidence            8776553222267899999998765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.84  E-value=7.6e-20  Score=186.16  Aligned_cols=156  Identities=13%  Similarity=0.116  Sum_probs=112.3

Q ss_pred             CCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccccccccc
Q 012933          234 FPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFD  313 (453)
Q Consensus       234 ~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~  313 (453)
                      +++|++|++.++. ++..  .+..+..+++|+.|+++++.- +.++.....+..+++|+.|+++++.-..   .+.  ..
T Consensus       323 l~~L~~L~Ls~n~-l~~~--~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~l~~L~~L~Ls~N~l~~---~l~--~~  393 (520)
T 2z7x_B          323 ISPFLHLDFSNNL-LTDT--VFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSY---DEK--KG  393 (520)
T ss_dssp             CCCCCEEECCSSC-CCTT--TTTTCCCCSSCCEEECCSSCC-CBHHHHHHHHTTCTTCCEEECCSSCCBC---CGG--GC
T ss_pred             CCcccEEEeECCc-cChh--hhhhhccCCCCCEEEccCCcc-CccccchHHHhhCCCCCEEECCCCcCCc---ccc--cc
Confidence            3788888888764 3321  246778999999999999753 3322110115678899999999874322   010  01


Q ss_pred             ccccCCCcCEEeecCCCCcceecccCCcccccC-CCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCc
Q 012933          314 EKVSFPRLRWLELSGLHKVQHLWKENDESNKAF-ANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFST  392 (453)
Q Consensus       314 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~  392 (453)
                      ....+++|++|++++|. ++....      ..+ ++|+.|++++| .++.+|..+..+++|++|++++ ++++.+|.. .
T Consensus       394 ~~~~l~~L~~L~Ls~N~-l~~~~~------~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~-~  463 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSSNI-LTDTIF------RCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVAS-NQLKSVPDG-I  463 (520)
T ss_dssp             SCCCCTTCCEEECCSSC-CCGGGG------GSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCCTT-T
T ss_pred             hhccCccCCEEECcCCC-CCcchh------hhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCC-CcCCccCHH-H
Confidence            24567999999999994 433222      222 79999999995 7889998888999999999988 578888764 4


Q ss_pred             ccccCCcceEEEcccc
Q 012933          393 SESLVNLGRMMIADCK  408 (453)
Q Consensus       393 ~~~l~~L~~L~i~~C~  408 (453)
                      ...+++|++|++++++
T Consensus       464 ~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          464 FDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             hccCCcccEEECcCCC
Confidence            5678999999998766

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.83  E-value=1.4e-19  Score=194.52  Aligned_cols=107  Identities=20%  Similarity=0.154  Sum_probs=62.7

Q ss_pred             cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccC------CCCCCCCCCCEEecccCcccccccCC
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV------PPSWHLENLEALEVSKCHGLINLLTF  390 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~------~~~~~l~~L~~L~l~~c~~l~~l~~~  390 (453)
                      .+|+|++|+++++ .++.++.....  ..+++|+.|+++++ .++..+      ..+..+++|++|++++ ++++.++..
T Consensus       424 ~l~~L~~L~Ls~N-~l~~~~~~~~~--~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~  498 (844)
T 3j0a_A          424 RVPHLQILILNQN-RFSSCSGDQTP--SENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSLPPG  498 (844)
T ss_dssp             TCTTCCEEEEESC-CCCCCCSSSSS--CSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTCCTT
T ss_pred             cCCccceeeCCCC-ccccccccccc--ccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCC-CcccccChh
Confidence            4667777777776 44444332111  45677777777773 343222      2356677888888876 467766553


Q ss_pred             CcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhh
Q 012933          391 STSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKN  439 (453)
Q Consensus       391 ~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~  439 (453)
                       ....+++|++|+++++. ++.+       .....  .+.|+.|+++++
T Consensus       499 -~~~~l~~L~~L~Ls~N~-l~~l-------~~~~~--~~~L~~L~Ls~N  536 (844)
T 3j0a_A          499 -VFSHLTALRGLSLNSNR-LTVL-------SHNDL--PANLEILDISRN  536 (844)
T ss_dssp             -SSSSCCSCSEEEEESCC-CSSC-------CCCCC--CSCCCEEEEEEE
T ss_pred             -HccchhhhheeECCCCC-CCcc-------Chhhh--hccccEEECCCC
Confidence             34567888888888774 3211       01111  167777777765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.83  E-value=3e-20  Score=185.55  Aligned_cols=298  Identities=13%  Similarity=0.077  Sum_probs=211.1

Q ss_pred             ccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933           20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK   99 (453)
Q Consensus        20 ~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~   99 (453)
                      ..+++.+++|++|+++++ .++.+| .+..        +++|++|+++++ .+++++    ...+++|++|++++|. ++
T Consensus        35 ~~~~~~l~~L~~L~Ls~n-~l~~~~-~l~~--------l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N~-l~   98 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNS-SITDMT-GIEK--------LTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSNK-LT   98 (457)
T ss_dssp             EEEHHHHTTCCEEECCSS-CCCCCT-TGGG--------CTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSSC-CS
T ss_pred             ccChhHcCCCCEEEccCC-CcccCh-hhcc--------cCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCCC-Cc
Confidence            346677999999999997 677776 4554        899999999984 476664    4578999999999975 77


Q ss_pred             ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcE
Q 012933          100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR  179 (453)
Q Consensus       100 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~  179 (453)
                      .++  +..+++|++|+++++. +              ..++  +..+++|++|+++++. +..++.      ..+++|++
T Consensus        99 ~~~--~~~l~~L~~L~L~~N~-l--------------~~l~--~~~l~~L~~L~l~~N~-l~~l~l------~~l~~L~~  152 (457)
T 3bz5_A           99 NLD--VTPLTKLTYLNCDTNK-L--------------TKLD--VSQNPLLTYLNCARNT-LTEIDV------SHNTQLTE  152 (457)
T ss_dssp             CCC--CTTCTTCCEEECCSSC-C--------------SCCC--CTTCTTCCEEECTTSC-CSCCCC------TTCTTCCE
T ss_pred             eee--cCCCCcCCEEECCCCc-C--------------Ceec--CCCCCcCCEEECCCCc-cceecc------ccCCcCCE
Confidence            665  6789999999999752 1              1111  4567899999999886 554432      45889999


Q ss_pred             EEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCccc
Q 012933          180 LVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNII  259 (453)
Q Consensus       180 L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~  259 (453)
                      |+++++..+... +   +..+++|+.|+++++ .++.++           .. .+++|++|.+.++. ++.+     .+.
T Consensus       153 L~l~~n~~~~~~-~---~~~l~~L~~L~ls~n-~l~~l~-----------l~-~l~~L~~L~l~~N~-l~~~-----~l~  209 (457)
T 3bz5_A          153 LDCHLNKKITKL-D---VTPQTQLTTLDCSFN-KITELD-----------VS-QNKLLNRLNCDTNN-ITKL-----DLN  209 (457)
T ss_dssp             EECTTCSCCCCC-C---CTTCTTCCEEECCSS-CCCCCC-----------CT-TCTTCCEEECCSSC-CSCC-----CCT
T ss_pred             EECCCCCccccc-c---cccCCcCCEEECCCC-ccceec-----------cc-cCCCCCEEECcCCc-CCee-----ccc
Confidence            999998655543 2   667899999999886 444432           11 23889999998764 4443     367


Q ss_pred             CCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCc----------CEEeecCC
Q 012933          260 ELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRL----------RWLELSGL  329 (453)
Q Consensus       260 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L----------~~L~l~~~  329 (453)
                      .+++|+.|+++++. ++.+|     +..+++|+.|+++++.--..         ..+.+++|          +.|++++|
T Consensus       210 ~l~~L~~L~Ls~N~-l~~ip-----~~~l~~L~~L~l~~N~l~~~---------~~~~l~~L~~L~l~~n~L~~L~l~~n  274 (457)
T 3bz5_A          210 QNIQLTFLDCSSNK-LTEID-----VTPLTQLTYFDCSVNPLTEL---------DVSTLSKLTTLHCIQTDLLEIDLTHN  274 (457)
T ss_dssp             TCTTCSEEECCSSC-CSCCC-----CTTCTTCSEEECCSSCCSCC---------CCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred             cCCCCCEEECcCCc-ccccC-----ccccCCCCEEEeeCCcCCCc---------CHHHCCCCCEEeccCCCCCEEECCCC
Confidence            78999999998864 44444     45677899999988732210         12344544          45555555


Q ss_pred             CCcceecccCCcccccCCCccceeeccCCCccccCC--------CCCCCCCCCEEecccCcccccccCCCcccccCCcce
Q 012933          330 HKVQHLWKENDESNKAFANLESLEISECSKLQKLVP--------PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGR  401 (453)
Q Consensus       330 ~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--------~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~  401 (453)
                      ..+..++.      ..+++|+.|++++|..++.+|.        .+.++++|++|++++ ++++.++    ...+++|++
T Consensus       275 ~~~~~~~~------~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~----l~~l~~L~~  343 (457)
T 3bz5_A          275 TQLIYFQA------EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD----VSHNTKLKS  343 (457)
T ss_dssp             TTCCEEEC------TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC----CTTCTTCSE
T ss_pred             ccCCcccc------cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC-Ccccccc----cccCCcCcE
Confidence            54555542      5789999999999987776664        244567788888866 5676653    456789999


Q ss_pred             EEEcccc
Q 012933          402 MMIADCK  408 (453)
Q Consensus       402 L~i~~C~  408 (453)
                      |++++..
T Consensus       344 L~l~~N~  350 (457)
T 3bz5_A          344 LSCVNAH  350 (457)
T ss_dssp             EECCSSC
T ss_pred             EECCCCC
Confidence            9887654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.83  E-value=1.4e-19  Score=177.35  Aligned_cols=305  Identities=14%  Similarity=0.146  Sum_probs=226.8

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc-CccCCCCcceEEeccccccccccccCCccchhH
Q 012933           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTI  136 (453)
Q Consensus        58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  136 (453)
                      +++++.|++.+ ..++.++.. ....+++|++|+++++. ++.++. .+..+++|++|+++++.               +
T Consensus        44 l~~l~~l~l~~-~~l~~l~~~-~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~---------------l  105 (390)
T 3o6n_A           44 LNNQKIVTFKN-STMRKLPAA-LLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA---------------I  105 (390)
T ss_dssp             GCCCSEEEEES-CEESEECTH-HHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC---------------C
T ss_pred             cCCceEEEecC-CchhhCChh-HhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCC---------------C
Confidence            78999999998 446666554 24578999999999975 665554 67789999999999653               1


Q ss_pred             HHH-HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccch
Q 012933          137 QKC-YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIE  215 (453)
Q Consensus       137 ~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~  215 (453)
                      ..+ +..+..+++|++|+++++. +..++... +  ..+++|++|+++++. ++.. +...+..+++|+.|+++++ .++
T Consensus       106 ~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~-~--~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~  178 (390)
T 3o6n_A          106 RYLPPHVFQNVPLLTVLVLERND-LSSLPRGI-F--HNTPKLTTLSMSNNN-LERI-EDDTFQATTSLQNLQLSSN-RLT  178 (390)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECCSSC-CCBC-CTTTTSSCTTCCEEECCSS-CCS
T ss_pred             CcCCHHHhcCCCCCCEEECCCCc-cCcCCHHH-h--cCCCCCcEEECCCCc-cCcc-ChhhccCCCCCCEEECCCC-cCC
Confidence            222 2345678999999999986 66555432 2  458999999999974 5554 3345788999999999986 344


Q ss_pred             hhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccc
Q 012933          216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQK  295 (453)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~  295 (453)
                      .+.            ...+++|++|++.++. ++.+       ...++|+.|+++++. +..++..     ..++|+.|+
T Consensus       179 ~~~------------~~~l~~L~~L~l~~n~-l~~~-------~~~~~L~~L~l~~n~-l~~~~~~-----~~~~L~~L~  232 (390)
T 3o6n_A          179 HVD------------LSLIPSLFHANVSYNL-LSTL-------AIPIAVEELDASHNS-INVVRGP-----VNVELTILK  232 (390)
T ss_dssp             BCC------------GGGCTTCSEEECCSSC-CSEE-------ECCSSCSEEECCSSC-CCEEECC-----CCSSCCEEE
T ss_pred             ccc------------cccccccceeeccccc-cccc-------CCCCcceEEECCCCe-eeecccc-----ccccccEEE
Confidence            331            1134899999998753 4433       335689999999864 4555443     235899999


Q ss_pred             ccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCE
Q 012933          296 LTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEA  375 (453)
Q Consensus       296 l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~  375 (453)
                      ++++.--.        .+.+..+++|++|+++++ .++.+....+   ..+++|++|++++ +.++.++..+..+++|++
T Consensus       233 l~~n~l~~--------~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~  299 (390)
T 3o6n_A          233 LQHNNLTD--------TAWLLNYPGLVEVDLSYN-ELEKIMYHPF---VKMQRLERLYISN-NRLVALNLYGQPIPTLKV  299 (390)
T ss_dssp             CCSSCCCC--------CGGGGGCTTCSEEECCSS-CCCEEESGGG---TTCSSCCEEECCS-SCCCEEECSSSCCTTCCE
T ss_pred             CCCCCCcc--------cHHHcCCCCccEEECCCC-cCCCcChhHc---cccccCCEEECCC-CcCcccCcccCCCCCCCE
Confidence            99873322        134567899999999999 6777766666   7899999999999 578888888888999999


Q ss_pred             EecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933          376 LEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE  440 (453)
Q Consensus       376 L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~  440 (453)
                      |+++++ .++.++.  ....+++|++|++++++-- .          .....++.|+.|+++++|
T Consensus       300 L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~i~-~----------~~~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          300 LDLSHN-HLLHVER--NQPQFDRLENLYLDHNSIV-T----------LKLSTHHTLKNLTLSHND  350 (390)
T ss_dssp             EECCSS-CCCCCGG--GHHHHTTCSEEECCSSCCC-C----------CCCCTTCCCSEEECCSSC
T ss_pred             EECCCC-cceecCc--cccccCcCCEEECCCCccc-e----------eCchhhccCCEEEcCCCC
Confidence            999885 6887765  3567899999999998732 1          125567889999998875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=4e-19  Score=177.65  Aligned_cols=331  Identities=14%  Similarity=0.122  Sum_probs=204.8

Q ss_pred             hhhhhhcccchhhcc--cccCcccccceEEeccccchhhhhc-ccccccccccccccccceeeccccccccccccccccc
Q 012933            6 FYFFNIHTHAHTFAY--FQVGIPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL   82 (453)
Q Consensus         6 ~~~~~~~~~~~~~~~--~~~~~~~~L~~L~L~~c~~l~~i~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~   82 (453)
                      +-++++.++. +...  ..++.+++|++|+++++.....++. .+..        +++|++|+++++. ++..... ...
T Consensus        32 l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~--------l~~L~~L~Ls~n~-l~~~~~~-~~~  100 (455)
T 3v47_A           32 VNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG--------LSSLIILKLDYNQ-FLQLETG-AFN  100 (455)
T ss_dssp             CCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT--------CTTCCEEECTTCT-TCEECTT-TTT
T ss_pred             cCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccc--------cccCCEEeCCCCc-cCccChh-hcc
Confidence            4455565432 2223  3478899999999999854445543 2333        8899999999843 5444332 256


Q ss_pred             cCCCcceEeecCCCCccccccC--ccCCCCcceEEeccccccccccccCCccchhHHHH-HHh-hcCCCCccEEEEeeCC
Q 012933           83 EFPSLERVSMTHCPNMKTFSHG--ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEE-MIGFRDMEYLQLSYFP  158 (453)
Q Consensus        83 ~l~~L~~L~l~~c~~l~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~~~-~~~~~~L~~L~l~~~~  158 (453)
                      .+++|++|++++|.--..++..  +..+++|++|+++++.-               ..+ +.. +..+++|++|+++++.
T Consensus       101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l---------------~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A          101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI---------------KKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC---------------CSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCcc---------------CccCcccccCCCCcccEEeCCCCc
Confidence            7889999999987533333433  66788999999986531               111 111 4456788888887765


Q ss_pred             CCcccccCCCCCc--------------------------------CccCCCcEEEecCCCCccccCchhHHhh--cCCCc
Q 012933          159 HLKEIWHGQALPV--------------------------------SFFNNLARLVVDDCTNMSSAIPANLLRC--LNNLQ  204 (453)
Q Consensus       159 ~l~~~~~~~~l~~--------------------------------~~l~~L~~L~l~~c~~l~~~~~~~~l~~--l~~L~  204 (453)
                       +..+.... +..                                ..+++|++|+++++. ++...+..+...  .++|+
T Consensus       166 -l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~  242 (455)
T 3v47_A          166 -VKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQ  242 (455)
T ss_dssp             -BSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEE
T ss_pred             -ccccChhh-hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhcccccccee
Confidence             33221111 100                                112456666666543 222222221111  15566


Q ss_pred             EEEeccCccchhhhcccccccccC--CCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCC
Q 012933          205 WLEVRNCDSIEEVLHLEEQNADKE--HRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNS  282 (453)
Q Consensus       205 ~L~l~~~~~l~~~~~~~~~~~~~~--~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  282 (453)
                      .|+++++.................  ......++|++|++.++. ++.+  .+..+..+++|+.|+++++. +...+...
T Consensus       243 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~  318 (455)
T 3v47_A          243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFAL--LKSVFSHFTDLEQLTLAQNE-INKIDDNA  318 (455)
T ss_dssp             EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEE--CTTTTTTCTTCCEEECTTSC-CCEECTTT
T ss_pred             eEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-cccc--chhhcccCCCCCEEECCCCc-ccccChhH
Confidence            666655432221111000000000  000012689999998875 4443  34678899999999999875 45554433


Q ss_pred             cccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccc
Q 012933          283 VVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQK  362 (453)
Q Consensus       283 ~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~  362 (453)
                        +..+++|+.|+++++.--..      ....+..+++|++|++++| .++.+....+   ..+++|++|++++ +.++.
T Consensus       319 --~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~-N~l~~  385 (455)
T 3v47_A          319 --FWGLTHLLKLNLSQNFLGSI------DSRMFENLDKLEVLDLSYN-HIRALGDQSF---LGLPNLKELALDT-NQLKS  385 (455)
T ss_dssp             --TTTCTTCCEEECCSSCCCEE------CGGGGTTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCS-SCCSC
T ss_pred             --hcCcccCCEEECCCCccCCc------ChhHhcCcccCCEEECCCC-cccccChhhc---cccccccEEECCC-Ccccc
Confidence              77889999999998743221      0123457899999999999 7888877666   8999999999999 57888


Q ss_pred             cCCC-CCCCCCCCEEecccCc
Q 012933          363 LVPP-SWHLENLEALEVSKCH  382 (453)
Q Consensus       363 l~~~-~~~l~~L~~L~l~~c~  382 (453)
                      +|.. +..+++|++|++++++
T Consensus       386 ~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          386 VPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC
T ss_pred             CCHhHhccCCcccEEEccCCC
Confidence            8875 5789999999998854

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=3.3e-19  Score=184.41  Aligned_cols=306  Identities=13%  Similarity=0.121  Sum_probs=220.4

Q ss_pred             cccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc-
Q 012933           25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-  103 (453)
Q Consensus        25 ~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-  103 (453)
                      .+.+++.++++++ .++.+|....       ..+++|++|+++++ .++..+.. ....+++|++|++++|. ++.++. 
T Consensus        49 ~l~~l~~l~l~~~-~l~~lp~~~~-------~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~  117 (597)
T 3oja_B           49 TLNNQKIVTFKNS-TMRKLPAALL-------DSFRQVELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFNA-IRYLPPH  117 (597)
T ss_dssp             GGCCCSEEEESSC-EESEECTHHH-------HHCCCCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred             cCCCceEEEeeCC-CCCCcCHHHH-------ccCCCCcEEECCCC-CCCCCChH-HhcCCCCCCEEECCCCc-CCCCCHH
Confidence            3678999999996 6888877532       23899999999984 46666543 25678999999999985 665554 


Q ss_pred             CccCCCCcceEEeccccccccccccCCccchhHHHHHHh-hcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEe
Q 012933          104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE-MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV  182 (453)
Q Consensus       104 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l  182 (453)
                      .+..+++|++|+++++.               +..++.. +..+++|++|+++++. +..++... +  ..+++|++|++
T Consensus       118 ~~~~l~~L~~L~L~~n~---------------l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~--~~l~~L~~L~L  178 (597)
T 3oja_B          118 VFQNVPLLTVLVLERND---------------LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDT-F--QATTSLQNLQL  178 (597)
T ss_dssp             TTTTCTTCCEEECCSSC---------------CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTT-T--TTCTTCCEEEC
T ss_pred             HHcCCCCCCEEEeeCCC---------------CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhh-h--hcCCcCcEEEC
Confidence            45789999999999652               2233333 3568999999999986 54444322 2  45899999999


Q ss_pred             cCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCC
Q 012933          183 DDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELP  262 (453)
Q Consensus       183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~  262 (453)
                      +++. ++.. +   +..+++|+.|+++++ .+..+.              ..++|++|++.++. ++.++   .  ...+
T Consensus       179 ~~N~-l~~~-~---~~~l~~L~~L~l~~n-~l~~l~--------------~~~~L~~L~ls~n~-l~~~~---~--~~~~  232 (597)
T 3oja_B          179 SSNR-LTHV-D---LSLIPSLFHANVSYN-LLSTLA--------------IPIAVEELDASHNS-INVVR---G--PVNV  232 (597)
T ss_dssp             TTSC-CSBC-C---GGGCTTCSEEECCSS-CCSEEE--------------CCTTCSEEECCSSC-CCEEE---C--SCCS
T ss_pred             cCCC-CCCc-C---hhhhhhhhhhhcccC-cccccc--------------CCchhheeeccCCc-ccccc---c--ccCC
Confidence            9874 5443 3   567899999999885 333321              22679999998864 45442   1  1246


Q ss_pred             CccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcc
Q 012933          263 ELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDES  342 (453)
Q Consensus       263 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~  342 (453)
                      +|+.|+++++. ++..  .  .+..+++|+.|+++++.--..      ....++.+++|++|++++| .++.++...   
T Consensus       233 ~L~~L~L~~n~-l~~~--~--~l~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~---  297 (597)
T 3oja_B          233 ELTILKLQHNN-LTDT--A--WLLNYPGLVEVDLSYNELEKI------MYHPFVKMQRLERLYISNN-RLVALNLYG---  297 (597)
T ss_dssp             CCCEEECCSSC-CCCC--G--GGGGCTTCSEEECCSSCCCEE------ESGGGTTCSSCCEEECTTS-CCCEEECSS---
T ss_pred             CCCEEECCCCC-CCCC--h--hhccCCCCCEEECCCCccCCC------CHHHhcCccCCCEEECCCC-CCCCCCccc---
Confidence            89999998875 3332  1  267788999999998743221      1133567899999999998 688876554   


Q ss_pred             cccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933          343 NKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       343 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                       ..+++|+.|++++| .++.+|..+..+++|++|++++ +.+..++    ...+++|++|++++++
T Consensus       298 -~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~-N~l~~~~----~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          298 -QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH-NSIVTLK----LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             -SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS-SCCCCCC----CCTTCCCSEEECCSSC
T ss_pred             -ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCC-CCCCCcC----hhhcCCCCEEEeeCCC
Confidence             57899999999995 6778888888899999999988 4576664    3467899999998766

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.82  E-value=5.7e-19  Score=181.46  Aligned_cols=82  Identities=16%  Similarity=0.173  Sum_probs=51.2

Q ss_pred             cCCCcCEEeecCCCCcceecccCCcccccC-CCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccc
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDESNKAF-ANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSES  395 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~  395 (453)
                      .+++|++|++++|. ++...   +   ..+ ++|+.|+++++ .++.+|..+..+++|++|++++ ++++.+|.. ....
T Consensus       426 ~l~~L~~L~l~~n~-l~~~~---~---~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~-~~~~  495 (562)
T 3a79_B          426 WAESILVLNLSSNM-LTGSV---F---RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS-NQLKSVPDG-VFDR  495 (562)
T ss_dssp             CCTTCCEEECCSSC-CCGGG---G---SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS-SCCCCCCTT-STTT
T ss_pred             CcccCCEEECCCCC-CCcch---h---hhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC-CCCCCCCHH-HHhc
Confidence            44566666666652 32211   1   223 57777777774 6777777666777788888866 567776653 3456


Q ss_pred             cCCcceEEEcccc
Q 012933          396 LVNLGRMMIADCK  408 (453)
Q Consensus       396 l~~L~~L~i~~C~  408 (453)
                      +++|++|++++++
T Consensus       496 l~~L~~L~l~~N~  508 (562)
T 3a79_B          496 LTSLQYIWLHDNP  508 (562)
T ss_dssp             CTTCCCEECCSCC
T ss_pred             CCCCCEEEecCCC
Confidence            7777777777544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.82  E-value=5.1e-19  Score=178.07  Aligned_cols=315  Identities=17%  Similarity=0.168  Sum_probs=230.1

Q ss_pred             ceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccc-ccCccCC
Q 012933           30 VNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF-SHGILST  108 (453)
Q Consensus        30 ~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~  108 (453)
                      +.++.++ ..++.+|..+          .+++++|++++ .+++.+... ....+++|++|+++++. ++.+ |..+..+
T Consensus        14 ~~v~c~~-~~l~~ip~~~----------~~~l~~L~L~~-n~l~~~~~~-~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l   79 (477)
T 2id5_A           14 RAVLCHR-KRFVAVPEGI----------PTETRLLDLGK-NRIKTLNQD-EFASFPHLEELELNENI-VSAVEPGAFNNL   79 (477)
T ss_dssp             TEEECCS-CCCSSCCSCC----------CTTCSEEECCS-SCCCEECTT-TTTTCTTCCEEECTTSC-CCEECTTTTTTC
T ss_pred             CEEEeCC-CCcCcCCCCC----------CCCCcEEECCC-CccceECHh-HccCCCCCCEEECCCCc-cCEeChhhhhCC
Confidence            3455555 3677777642          34899999998 456666443 25679999999999974 6654 6778889


Q ss_pred             CCcceEEeccccccccccccCCccchhHHHHHH-hhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCC
Q 012933          109 PKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE-EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTN  187 (453)
Q Consensus       109 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~  187 (453)
                      ++|++|+++++.               +..++. ....+++|++|+++++. +..+.... +  ..+++|++|+++++. 
T Consensus        80 ~~L~~L~L~~n~---------------l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-~--~~l~~L~~L~l~~n~-  139 (477)
T 2id5_A           80 FNLRTLGLRSNR---------------LKLIPLGVFTGLSNLTKLDISENK-IVILLDYM-F--QDLYNLKSLEVGDND-  139 (477)
T ss_dssp             TTCCEEECCSSC---------------CCSCCTTSSTTCTTCCEEECTTSC-CCEECTTT-T--TTCTTCCEEEECCTT-
T ss_pred             ccCCEEECCCCc---------------CCccCcccccCCCCCCEEECCCCc-cccCChhH-c--cccccCCEEECCCCc-
Confidence            999999999642               222222 24568999999999987 44433222 2  458999999999864 


Q ss_pred             ccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEE
Q 012933          188 MSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHL  267 (453)
Q Consensus       188 l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L  267 (453)
                      ++...+ ..+..+++|+.|+++++ .++.++..        ... .+++|++|++.++. +..+  .+..+..+++|+.|
T Consensus       140 l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~--------~l~-~l~~L~~L~l~~n~-i~~~--~~~~~~~l~~L~~L  205 (477)
T 2id5_A          140 LVYISH-RAFSGLNSLEQLTLEKC-NLTSIPTE--------ALS-HLHGLIVLRLRHLN-INAI--RDYSFKRLYRLKVL  205 (477)
T ss_dssp             CCEECT-TSSTTCTTCCEEEEESC-CCSSCCHH--------HHT-TCTTCCEEEEESCC-CCEE--CTTCSCSCTTCCEE
T ss_pred             cceeCh-hhccCCCCCCEEECCCC-cCcccChh--------Hhc-ccCCCcEEeCCCCc-CcEe--ChhhcccCccccee
Confidence            555433 44788999999999987 44443220        011 23899999998874 4444  24568889999999


Q ss_pred             eeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCC
Q 012933          268 TIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFA  347 (453)
Q Consensus       268 ~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~  347 (453)
                      ++++|..+..++...   ....+|+.|+++++.--.++      ...+..+++|++|+++++ .++.++...+   ..++
T Consensus       206 ~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~  272 (477)
T 2id5_A          206 EISHWPYLDTMTPNC---LYGLNLTSLSITHCNLTAVP------YLAVRHLVYLRFLNLSYN-PISTIEGSML---HELL  272 (477)
T ss_dssp             EEECCTTCCEECTTT---TTTCCCSEEEEESSCCCSCC------HHHHTTCTTCCEEECCSS-CCCEECTTSC---TTCT
T ss_pred             eCCCCccccccCccc---ccCccccEEECcCCcccccC------HHHhcCccccCeeECCCC-cCCccChhhc---cccc
Confidence            999999888887663   33448999999987322110      112457899999999999 6888888777   8999


Q ss_pred             CccceeeccCCCcccc-CCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933          348 NLESLEISECSKLQKL-VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       348 ~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                      +|+.|+++++ .++.+ |..+..+++|++|++++ +.++.++.. .+..+++|++|++.+++
T Consensus       273 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          273 RLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSG-NQLTTLEES-VFHSVGNLETLILDSNP  331 (477)
T ss_dssp             TCCEEECCSS-CCSEECTTTBTTCTTCCEEECCS-SCCSCCCGG-GBSCGGGCCEEECCSSC
T ss_pred             cCCEEECCCC-ccceECHHHhcCcccCCEEECCC-CcCceeCHh-HcCCCcccCEEEccCCC
Confidence            9999999995 56665 55688899999999988 578887653 45678999999998765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=5.2e-19  Score=182.91  Aligned_cols=305  Identities=14%  Similarity=0.142  Sum_probs=226.8

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeecCCCCccccc-cCccCCCCcceEEeccccccccccccCCccchhH
Q 012933           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS-HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTI  136 (453)
Q Consensus        58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  136 (453)
                      +++++.+++.+ ..+..++.. ....+++|+.|+++++. +..++ ..+..+++|++|+++++.               +
T Consensus        50 l~~l~~l~l~~-~~l~~lp~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~---------------l  111 (597)
T 3oja_B           50 LNNQKIVTFKN-STMRKLPAA-LLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA---------------I  111 (597)
T ss_dssp             GCCCSEEEESS-CEESEECTH-HHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC---------------C
T ss_pred             CCCceEEEeeC-CCCCCcCHH-HHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCc---------------C
Confidence            67889999888 346666544 24578999999999975 66555 477889999999999653               1


Q ss_pred             HHH-HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccch
Q 012933          137 QKC-YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIE  215 (453)
Q Consensus       137 ~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~  215 (453)
                      ..+ +..+..+++|++|+++++. +..++... +  ..+++|++|+++++. ++...+ ..+..+++|+.|+++++ .+.
T Consensus       112 ~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~-~--~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~  184 (597)
T 3oja_B          112 RYLPPHVFQNVPLLTVLVLERND-LSSLPRGI-F--HNTPKLTTLSMSNNN-LERIED-DTFQATTSLQNLQLSSN-RLT  184 (597)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECCSSC-CCBCCT-TTTTTCTTCCEEECTTS-CCS
T ss_pred             CCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHH-h--ccCCCCCEEEeeCCc-CCCCCh-hhhhcCCcCcEEECcCC-CCC
Confidence            222 2234678999999999986 66555432 2  458999999999974 555544 45888999999999986 344


Q ss_pred             hhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccc
Q 012933          216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQK  295 (453)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~  295 (453)
                      .++            ...+++|++|++.++. ++.+       ...++|+.|+++++. +..++..   .  .++|+.|+
T Consensus       185 ~~~------------~~~l~~L~~L~l~~n~-l~~l-------~~~~~L~~L~ls~n~-l~~~~~~---~--~~~L~~L~  238 (597)
T 3oja_B          185 HVD------------LSLIPSLFHANVSYNL-LSTL-------AIPIAVEELDASHNS-INVVRGP---V--NVELTILK  238 (597)
T ss_dssp             BCC------------GGGCTTCSEEECCSSC-CSEE-------ECCTTCSEEECCSSC-CCEEECS---C--CSCCCEEE
T ss_pred             CcC------------hhhhhhhhhhhcccCc-cccc-------cCCchhheeeccCCc-ccccccc---c--CCCCCEEE
Confidence            331            1134899999998763 3332       345689999999865 4555543   2  24899999


Q ss_pred             ccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCE
Q 012933          296 LTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEA  375 (453)
Q Consensus       296 l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~  375 (453)
                      ++++.--.        .+.++.+++|++|++++| .+..+....+   ..+++|+.|++++ +.++.+|..+..+++|++
T Consensus       239 L~~n~l~~--------~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~  305 (597)
T 3oja_B          239 LQHNNLTD--------TAWLLNYPGLVEVDLSYN-ELEKIMYHPF---VKMQRLERLYISN-NRLVALNLYGQPIPTLKV  305 (597)
T ss_dssp             CCSSCCCC--------CGGGGGCTTCSEEECCSS-CCCEEESGGG---TTCSSCCEEECTT-SCCCEEECSSSCCTTCCE
T ss_pred             CCCCCCCC--------ChhhccCCCCCEEECCCC-ccCCCCHHHh---cCccCCCEEECCC-CCCCCCCcccccCCCCcE
Confidence            99873221        234568899999999998 6777766666   7999999999999 578889888888999999


Q ss_pred             EecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933          376 LEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE  440 (453)
Q Consensus       376 L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~  440 (453)
                      |++++ +.+..+|.  ....+++|++|++++|.-.           ......++.|++|+++++|
T Consensus       306 L~Ls~-N~l~~i~~--~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          306 LDLSH-NHLLHVER--NQPQFDRLENLYLDHNSIV-----------TLKLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             EECCS-SCCCCCGG--GHHHHTTCSEEECCSSCCC-----------CCCCCTTCCCSEEECCSSC
T ss_pred             EECCC-CCCCccCc--ccccCCCCCEEECCCCCCC-----------CcChhhcCCCCEEEeeCCC
Confidence            99988 46777765  3567899999999998742           1125567899999998876

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.81  E-value=9.2e-19  Score=174.81  Aligned_cols=300  Identities=12%  Similarity=0.100  Sum_probs=209.2

Q ss_pred             hhhhhhcccchhhcccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCC
Q 012933            6 FYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFP   85 (453)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~   85 (453)
                      +-.+++.++ .+..++.++.+++|++|++++| .++.++  ++.        +++|++|+++++ .++.++    ...++
T Consensus        44 L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~--~~~--------l~~L~~L~Ls~N-~l~~~~----~~~l~  106 (457)
T 3bz5_A           44 LTSLDCHNS-SITDMTGIEKLTGLTKLICTSN-NITTLD--LSQ--------NTNLTYLACDSN-KLTNLD----VTPLT  106 (457)
T ss_dssp             CCEEECCSS-CCCCCTTGGGCTTCSEEECCSS-CCSCCC--CTT--------CTTCSEEECCSS-CCSCCC----CTTCT
T ss_pred             CCEEEccCC-CcccChhhcccCCCCEEEccCC-cCCeEc--ccc--------CCCCCEEECcCC-CCceee----cCCCC
Confidence            344555533 3334557888999999999997 577764  444        899999999984 466653    45789


Q ss_pred             CcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCccccc
Q 012933           86 SLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWH  165 (453)
Q Consensus        86 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  165 (453)
                      +|++|+++++ +++.++  +..+++|++|+++++. +              ..+  .+..+++|++|+++++..+..++.
T Consensus       107 ~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l--------------~~l--~l~~l~~L~~L~l~~n~~~~~~~~  166 (457)
T 3bz5_A          107 KLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-L--------------TEI--DVSHNTQLTELDCHLNKKITKLDV  166 (457)
T ss_dssp             TCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-C--------------SCC--CCTTCTTCCEEECTTCSCCCCCCC
T ss_pred             cCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-c--------------cee--ccccCCcCCEEECCCCCccccccc
Confidence            9999999997 577665  6789999999999753 1              111  245678999999999875665432


Q ss_pred             CCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccC
Q 012933          166 GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL  245 (453)
Q Consensus       166 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  245 (453)
                            ..+++|++|+++++ .++.. +   +..+++|+.|+++++ .++.+.           .. .+++|++|++.++
T Consensus       167 ------~~l~~L~~L~ls~n-~l~~l-~---l~~l~~L~~L~l~~N-~l~~~~-----------l~-~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          167 ------TPQTQLTTLDCSFN-KITEL-D---VSQNKLLNRLNCDTN-NITKLD-----------LN-QNIQLTFLDCSSN  222 (457)
T ss_dssp             ------TTCTTCCEEECCSS-CCCCC-C---CTTCTTCCEEECCSS-CCSCCC-----------CT-TCTTCSEEECCSS
T ss_pred             ------ccCCcCCEEECCCC-cccee-c---cccCCCCCEEECcCC-cCCeec-----------cc-cCCCCCEEECcCC
Confidence                  45899999999987 45554 3   667899999999886 344431           11 2389999999887


Q ss_pred             CCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCC-------CcccccccccccccccccccccccccccC
Q 012933          246 PKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTD-------NKEPQKLTSEENFLLAHQVQPLFDEKVSF  318 (453)
Q Consensus       246 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~l~~~~~~~~~l  318 (453)
                      . ++.+   +  +..+++|+.|+++++. ++..+...  +..+.       +|+.|+++++....       .++ .+.+
T Consensus       223 ~-l~~i---p--~~~l~~L~~L~l~~N~-l~~~~~~~--l~~L~~L~l~~n~L~~L~l~~n~~~~-------~~~-~~~l  285 (457)
T 3bz5_A          223 K-LTEI---D--VTPLTQLTYFDCSVNP-LTELDVST--LSKLTTLHCIQTDLLEIDLTHNTQLI-------YFQ-AEGC  285 (457)
T ss_dssp             C-CSCC---C--CTTCTTCSEEECCSSC-CSCCCCTT--CTTCCEEECTTCCCSCCCCTTCTTCC-------EEE-CTTC
T ss_pred             c-cccc---C--ccccCCCCEEEeeCCc-CCCcCHHH--CCCCCEEeccCCCCCEEECCCCccCC-------ccc-cccc
Confidence            4 5554   2  7789999999999864 44444332  22222       34455555543221       111 3467


Q ss_pred             CCcCEEeecCCCCcceecccCC--c--ccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccc
Q 012933          319 PRLRWLELSGLHKVQHLWKEND--E--SNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINL  387 (453)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~--~--~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l  387 (453)
                      ++|+.|++++|..+..++...-  .  .....++|++|++++ +.++.++  +.++++|+.|++++ ++++++
T Consensus       286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~-N~l~~l  354 (457)
T 3bz5_A          286 RKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVN-AHIQDF  354 (457)
T ss_dssp             TTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCS-SCCCBC
T ss_pred             ccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCC-CCCCCc
Confidence            9999999999988777764210  0  125667888888888 5677763  77899999999977 667664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.81  E-value=7.1e-19  Score=180.73  Aligned_cols=157  Identities=9%  Similarity=0.032  Sum_probs=101.4

Q ss_pred             cCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcce-ecc
Q 012933          259 IELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH-LWK  337 (453)
Q Consensus       259 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~  337 (453)
                      ..+++|+.|+++++.--...+..   +..+++|+.|+++++.--.    +......+..+++|++|+++++ .++. ++.
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~L~~N~l~~----~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~  421 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQG---CSTLKRLQTLILQRNGLKN----FFKVALMTKNMSSLETLDVSLN-SLNSHAYD  421 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTT---CCSCSSCCEEECCSSCCCB----TTHHHHTTTTCTTCCEEECTTS-CCBSCCSS
T ss_pred             cCCCCceEEECCCCccccchhhh---hcccCCCCEEECCCCCcCC----cccchhhhcCCCCCCEEECCCC-cCCCccCh
Confidence            45677777777775433222322   5667778888877752211    0000112456788888888888 4555 666


Q ss_pred             cCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhc
Q 012933          338 ENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQ  417 (453)
Q Consensus       338 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~  417 (453)
                      ..+   ..+++|++|++++|.--..+|..+.  ++|++|++++ ++++.+|..  ...+++|++|+++++. ++.+    
T Consensus       422 ~~~---~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~-N~l~~ip~~--~~~l~~L~~L~L~~N~-l~~l----  488 (562)
T 3a79_B          422 RTC---AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHN-NRIMSIPKD--VTHLQALQELNVASNQ-LKSV----  488 (562)
T ss_dssp             CCC---CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCS-SCCCCCCTT--TTSSCCCSEEECCSSC-CCCC----
T ss_pred             hhh---cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCC-CcCcccChh--hcCCCCCCEEECCCCC-CCCC----
Confidence            656   6788888888888543234444332  6899999987 478887763  3378999999998875 2222    


Q ss_pred             cCCccC-CCceeccccchhhhhhH
Q 012933          418 VGEEAK-DCNVFKELSCETMSKNE  440 (453)
Q Consensus       418 ~~~~~~-~~~~~~~l~~l~l~~~~  440 (453)
                          +. .+..++.|+.++++++|
T Consensus       489 ----~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          489 ----PDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             ----CTTSTTTCTTCCCEECCSCC
T ss_pred             ----CHHHHhcCCCCCEEEecCCC
Confidence                22 25678899999998875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.78  E-value=5e-18  Score=169.32  Aligned_cols=333  Identities=17%  Similarity=0.130  Sum_probs=171.8

Q ss_pred             cCcccccceEEeccccchhhhhcccccccccccccccc-------------cceeeccccccccccccccccccCCCcce
Q 012933           23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSK-------------LKVLILDYLPTLTSFCLENYTLEFPSLER   89 (453)
Q Consensus        23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~l~~~~~~~~~~~l~~L~~   89 (453)
                      ++.+++|++|++++|.-.+.+|..++.        +++             +++|+++++. +++++.     ..++|++
T Consensus        30 i~~L~~L~~L~l~~n~~~~~~p~~~~~--------l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~-----~~~~L~~   95 (454)
T 1jl5_A           30 AENVKSKTEYYNAWSEWERNAPPGNGE--------QREMAVSRLRDCLDRQAHELELNNLG-LSSLPE-----LPPHLES   95 (454)
T ss_dssp             ----CCHHHHHHHHHHHHHTSCTTSCC--------CHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS-----CCTTCSE
T ss_pred             HhcccchhhhhccCCcccccCCccccc--------chhcchhhhhhhhccCCCEEEecCCc-cccCCC-----CcCCCCE
Confidence            677888888888887555567766554        333             3556666532 444322     1356677


Q ss_pred             EeecCCCCccccccCccCCCCcceEEeccc---------cccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCC
Q 012933           90 VSMTHCPNMKTFSHGILSTPKLHKVQVTEK---------EEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHL  160 (453)
Q Consensus        90 L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  160 (453)
                      |+++++ .++.+|.   ..++|++|+++++         +++..+++.++    .+..++ ++..+++|++|+++++. +
T Consensus        96 L~l~~n-~l~~lp~---~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n----~l~~lp-~~~~l~~L~~L~l~~N~-l  165 (454)
T 1jl5_A           96 LVASCN-SLTELPE---LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN----QLEKLP-ELQNSSFLKIIDVDNNS-L  165 (454)
T ss_dssp             EECCSS-CCSSCCC---CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSS----CCSSCC-CCTTCTTCCEEECCSSC-C
T ss_pred             EEccCC-cCCcccc---ccCCCcEEECCCCccCcccCCCCCCCEEECcCC----CCCCCc-ccCCCCCCCEEECCCCc-C
Confidence            776664 3444543   2355666666553         12222333332    112233 35667777777777765 4


Q ss_pred             cccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCcccee
Q 012933          161 KEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGL  240 (453)
Q Consensus       161 ~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L  240 (453)
                      ..++.       ..++|++|+++++ .++.. +  .+..+++|+.|+++++. +..++.             .+++|++|
T Consensus       166 ~~lp~-------~~~~L~~L~L~~n-~l~~l-~--~~~~l~~L~~L~l~~N~-l~~l~~-------------~~~~L~~L  220 (454)
T 1jl5_A          166 KKLPD-------LPPSLEFIAAGNN-QLEEL-P--ELQNLPFLTAIYADNNS-LKKLPD-------------LPLSLESI  220 (454)
T ss_dssp             SCCCC-------CCTTCCEEECCSS-CCSSC-C--CCTTCTTCCEEECCSSC-CSSCCC-------------CCTTCCEE
T ss_pred             cccCC-------CcccccEEECcCC-cCCcC-c--cccCCCCCCEEECCCCc-CCcCCC-------------CcCcccEE
Confidence            43332       2357888888776 34443 3  26677888888887752 333221             22578888


Q ss_pred             eeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccc---ccc------c
Q 012933          241 RLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQ---VQP------L  311 (453)
Q Consensus       241 ~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---l~~------~  311 (453)
                      ++.++ .++.++    .+..+++|+.|+++++. ++.++..      .++|+.|+++++.--.++..   +..      .
T Consensus       221 ~l~~n-~l~~lp----~~~~l~~L~~L~l~~N~-l~~l~~~------~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~  288 (454)
T 1jl5_A          221 VAGNN-ILEELP----ELQNLPFLTTIYADNNL-LKTLPDL------PPSLEALNVRDNYLTDLPELPQSLTFLDVSENI  288 (454)
T ss_dssp             ECCSS-CCSSCC----CCTTCTTCCEEECCSSC-CSSCCSC------CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             ECcCC-cCCccc----ccCCCCCCCEEECCCCc-CCccccc------ccccCEEECCCCcccccCcccCcCCEEECcCCc
Confidence            88776 344432    36677788888887753 3333321      23666776666531111000   000      0


Q ss_pred             cccc-ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCC
Q 012933          312 FDEK-VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTF  390 (453)
Q Consensus       312 ~~~~-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~  390 (453)
                      +..+ ...++|++|+++++ .++.++       ...++|+.|++++ +.++.+|..   +++|++|++++ ++++.+|. 
T Consensus       289 l~~l~~~~~~L~~L~l~~N-~l~~i~-------~~~~~L~~L~Ls~-N~l~~lp~~---~~~L~~L~L~~-N~l~~lp~-  354 (454)
T 1jl5_A          289 FSGLSELPPNLYYLNASSN-EIRSLC-------DLPPSLEELNVSN-NKLIELPAL---PPRLERLIASF-NHLAEVPE-  354 (454)
T ss_dssp             CSEESCCCTTCCEEECCSS-CCSEEC-------CCCTTCCEEECCS-SCCSCCCCC---CTTCCEEECCS-SCCSCCCC-
T ss_pred             cCcccCcCCcCCEEECcCC-cCCccc-------CCcCcCCEEECCC-Ccccccccc---CCcCCEEECCC-Cccccccc-
Confidence            0000 01134555555554 333332       1225788888888 457777654   58889999977 46777654 


Q ss_pred             CcccccCCcceEEEcccchhHHHHhhccCCccCCCcee-------------ccccchhhhhhH
Q 012933          391 STSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVF-------------KELSCETMSKNE  440 (453)
Q Consensus       391 ~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~-------------~~l~~l~l~~~~  440 (453)
                          .+++|++|+++++.--. +     ...+..+..+             +.|++|++++++
T Consensus       355 ----~l~~L~~L~L~~N~l~~-l-----~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          355 ----LPQNLKQLHVEYNPLRE-F-----PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             ----CCTTCCEEECCSSCCSS-C-----CCCCTTCCEEECCC---------------------
T ss_pred             ----hhhhccEEECCCCCCCc-C-----CCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence                35889999998875321 0     0112223333             788888888765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.78  E-value=1.2e-20  Score=194.99  Aligned_cols=172  Identities=12%  Similarity=0.027  Sum_probs=77.9

Q ss_pred             cccccceEEeccccchhhhhcccccccccccccccc-cceeeccccccccccccccccccCCCcceEeecCCCCccc---
Q 012933           25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSK-LKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT---  100 (453)
Q Consensus        25 ~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~---  100 (453)
                      .+++|++|+|++|.--...+..+..       .+++ |++|++++|..+...........+++|++|++++|. +..   
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~-------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~  181 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAK-------ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDG  181 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHH-------HHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCS
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHH-------hccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcch
Confidence            4677777777776322222222221       1334 777777766543322122223356777777777764 221   


Q ss_pred             --cccCccCCCCcceEEeccc-----------------cccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCc
Q 012933          101 --FSHGILSTPKLHKVQVTEK-----------------EEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLK  161 (453)
Q Consensus       101 --~~~~~~~~~~L~~L~l~~~-----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  161 (453)
                        ++.....+++|++|+++++                 +++..+.+.++    ....++..+..+++|++|.++.+....
T Consensus       182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~----~~~~l~~~~~~~~~L~~L~l~~~~~~~  257 (592)
T 3ogk_B          182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF----EILELVGFFKAAANLEEFCGGSLNEDI  257 (592)
T ss_dssp             HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC----BGGGGHHHHHHCTTCCEEEECBCCCCT
T ss_pred             hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc----cHHHHHHHHhhhhHHHhhccccccccc
Confidence              1112234566666666432                 22222233322    112233444445666666665432111


Q ss_pred             ccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCc
Q 012933          162 EIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCD  212 (453)
Q Consensus       162 ~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~  212 (453)
                      ...... .....+++|+++.+.++..  ...+ ..+..+++|++|++++|.
T Consensus       258 ~~~~~~-~~l~~~~~L~~L~l~~~~~--~~l~-~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          258 GMPEKY-MNLVFPRKLCRLGLSYMGP--NEMP-ILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             TCTTSS-SCCCCCTTCCEEEETTCCT--TTGG-GGGGGGGGCCEEEETTCC
T ss_pred             chHHHH-HHhhccccccccCccccch--hHHH-HHHhhcCCCcEEecCCCc
Confidence            100000 1113355666666555321  1112 235556666666666665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.77  E-value=2.7e-21  Score=200.00  Aligned_cols=114  Identities=15%  Similarity=0.093  Sum_probs=50.7

Q ss_pred             CCCcCEEeec-----CCCCcceeccc-CCc-ccccCCCccceeeccCCCccccC-CCC-CCCCCCCEEecccCccccccc
Q 012933          318 FPRLRWLELS-----GLHKVQHLWKE-NDE-SNKAFANLESLEISECSKLQKLV-PPS-WHLENLEALEVSKCHGLINLL  388 (453)
Q Consensus       318 l~~L~~L~l~-----~~~~l~~l~~~-~~~-~~~~l~~L~~L~l~~c~~l~~l~-~~~-~~l~~L~~L~l~~c~~l~~l~  388 (453)
                      +|+|+.|+++     +|..++..+.. .++ ....+++|++|++++  .+++.. ..+ ..+++|++|++++|. +++..
T Consensus       396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~  472 (594)
T 2p1m_B          396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLG  472 (594)
T ss_dssp             CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHH
T ss_pred             CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHH
Confidence            5566666665     34444433211 000 014455666666644  222211 111 125566666665543 33322


Q ss_pred             CCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhHH
Q 012933          389 TFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNED  441 (453)
Q Consensus       389 ~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~  441 (453)
                      ...+...+++|++|++++|+.-....       ......++.|++|++++|+.
T Consensus       473 ~~~l~~~~~~L~~L~L~~n~~~~~~~-------~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          473 MHHVLSGCDSLRKLEIRDCPFGDKAL-------LANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHHCTTCCEEEEESCSCCHHHH-------HHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHhcCCCcCEEECcCCCCcHHHH-------HHHHHhCCCCCEEeeeCCCC
Confidence            11122445666666666666411110       01112356666666666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.77  E-value=2.7e-17  Score=171.09  Aligned_cols=134  Identities=16%  Similarity=0.154  Sum_probs=81.2

Q ss_pred             ccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecc
Q 012933          258 IIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWK  337 (453)
Q Consensus       258 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  337 (453)
                      +..+++++.++++.+. +.......  +..+++++.|+++++.....   +  ....+..+++|++|++++| .++.++.
T Consensus       441 ~~~l~~l~~l~ls~n~-l~~~~~~~--~~~~~~L~~L~Ls~N~~~~~---~--~~~~~~~l~~L~~L~Ls~N-~L~~l~~  511 (635)
T 4g8a_A          441 FLSLRNLIYLDISHTH-TRVAFNGI--FNGLSSLEVLKMAGNSFQEN---F--LPDIFTELRNLTFLDLSQC-QLEQLSP  511 (635)
T ss_dssp             TTTCTTCCEEECTTSC-CEECCTTT--TTTCTTCCEEECTTCEEGGG---E--ECSCCTTCTTCCEEECTTS-CCCEECT
T ss_pred             cccccccccccccccc-cccccccc--cccchhhhhhhhhhcccccc---c--CchhhhhccccCEEECCCC-ccCCcCh
Confidence            4445555555555432 22222222  45556667777666532220   0  0122456678888888887 6777776


Q ss_pred             cCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCccccc-CCcceEEEcc
Q 012933          338 ENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESL-VNLGRMMIAD  406 (453)
Q Consensus       338 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l-~~L~~L~i~~  406 (453)
                      ..|   ..+++|++|++++ ++++.++.. +..+++|++|++++ ++++.++... ...+ ++|++|++++
T Consensus       512 ~~f---~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~-l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          512 TAF---NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQE-LQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             TTT---TTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSC-TTCCCTTCCEEECTT
T ss_pred             HHH---cCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHH-HHhhhCcCCEEEeeC
Confidence            666   7788888888888 467776653 66778888888876 5677665542 3344 5788888864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.77  E-value=2.6e-17  Score=157.41  Aligned_cols=129  Identities=11%  Similarity=0.083  Sum_probs=72.5

Q ss_pred             CCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCc
Q 012933          262 PELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDE  341 (453)
Q Consensus       262 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~  341 (453)
                      ++|+.|+++++. ++..+...  +..+++|+.|+++++.--..      ....+..+++|++|++++| .++.++...  
T Consensus       192 ~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~N-~l~~lp~~l--  259 (330)
T 1xku_A          192 PSLTELHLDGNK-ITKVDAAS--LKGLNNLAKLGLSFNSISAV------DNGSLANTPHLRELHLNNN-KLVKVPGGL--  259 (330)
T ss_dssp             TTCSEEECTTSC-CCEECTGG--GTTCTTCCEEECCSSCCCEE------CTTTGGGSTTCCEEECCSS-CCSSCCTTT--
T ss_pred             ccCCEEECCCCc-CCccCHHH--hcCCCCCCEEECCCCcCcee------ChhhccCCCCCCEEECCCC-cCccCChhh--
Confidence            556666665543 33332222  44555666666655421110      0012345678888888887 566666543  


Q ss_pred             ccccCCCccceeeccCCCccccCCCCC-------CCCCCCEEecccCccccc--ccCCCcccccCCcceEEEccc
Q 012933          342 SNKAFANLESLEISECSKLQKLVPPSW-------HLENLEALEVSKCHGLIN--LLTFSTSESLVNLGRMMIADC  407 (453)
Q Consensus       342 ~~~~l~~L~~L~l~~c~~l~~l~~~~~-------~l~~L~~L~l~~c~~l~~--l~~~~~~~~l~~L~~L~i~~C  407 (453)
                        ..+++|++|++++ +.++.++....       ..+.++.+++++.+ +..  ++. ..+..+.+++.++++++
T Consensus       260 --~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~-~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          260 --ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQP-STFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             --TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCG-GGGTTCCCGGGEEC---
T ss_pred             --ccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCc-ccccccCc-cccccccceeEEEeccc
Confidence              6778888888888 45776665321       24678888887743 433  222 24456778888888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.77  E-value=1.6e-17  Score=159.02  Aligned_cols=192  Identities=16%  Similarity=0.146  Sum_probs=104.0

Q ss_pred             ccceeeccccccccccccccccccCCCcceEeecCCCCccccc-cCccCCCCcceEEeccccccccccccCCccchhHHH
Q 012933           60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS-HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQK  138 (453)
Q Consensus        60 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  138 (453)
                      +++.+++++ ..++.++..    -.++|+.|+++++. ++.++ ..+..+++|++|+++++.               +..
T Consensus        34 ~l~~l~~~~-~~l~~ip~~----~~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~---------------l~~   92 (332)
T 2ft3_A           34 HLRVVQCSD-LGLKAVPKE----ISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK---------------ISK   92 (332)
T ss_dssp             ETTEEECCS-SCCSSCCSC----CCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC---------------CCE
T ss_pred             cCCEEECCC-CCccccCCC----CCCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc---------------cCc
Confidence            466666665 234444433    23567777777754 44443 355667777777777532               111


Q ss_pred             H-HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933          139 C-YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV  217 (453)
Q Consensus       139 ~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~  217 (453)
                      + +..+..+++|++|+++++. +..++...      +++|++|+++++. ++.. +...+..+++|+.|+++++. ++..
T Consensus        93 ~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~------~~~L~~L~l~~n~-i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~  162 (332)
T 2ft3_A           93 IHEKAFSPLRKLQKLYISKNH-LVEIPPNL------PSSLVELRIHDNR-IRKV-PKGVFSGLRNMNCIEMGGNP-LENS  162 (332)
T ss_dssp             ECGGGSTTCTTCCEEECCSSC-CCSCCSSC------CTTCCEEECCSSC-CCCC-CSGGGSSCSSCCEEECCSCC-CBGG
T ss_pred             cCHhHhhCcCCCCEEECCCCc-CCccCccc------cccCCEEECCCCc-cCcc-CHhHhCCCccCCEEECCCCc-cccC
Confidence            1 3345567778888887765 44444433      4788999988864 4444 44457788888888888753 3221


Q ss_pred             hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccc
Q 012933          218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLT  297 (453)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~  297 (453)
                      ...      ..... . .+|++|++.++. ++.++   ..+  .++|+.|+++++. +...+...  +..+++|+.|+++
T Consensus       163 ~~~------~~~~~-~-l~L~~L~l~~n~-l~~l~---~~~--~~~L~~L~l~~n~-i~~~~~~~--l~~l~~L~~L~L~  225 (332)
T 2ft3_A          163 GFE------PGAFD-G-LKLNYLRISEAK-LTGIP---KDL--PETLNELHLDHNK-IQAIELED--LLRYSKLYRLGLG  225 (332)
T ss_dssp             GSC------TTSSC-S-CCCSCCBCCSSB-CSSCC---SSS--CSSCSCCBCCSSC-CCCCCTTS--STTCTTCSCCBCC
T ss_pred             CCC------ccccc-C-CccCEEECcCCC-CCccC---ccc--cCCCCEEECCCCc-CCccCHHH--hcCCCCCCEEECC
Confidence            000      00000 1 166777776653 33331   111  2567777776643 33333222  4444455555555


Q ss_pred             cc
Q 012933          298 SE  299 (453)
Q Consensus       298 ~~  299 (453)
                      ++
T Consensus       226 ~N  227 (332)
T 2ft3_A          226 HN  227 (332)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.77  E-value=7e-20  Score=189.42  Aligned_cols=353  Identities=17%  Similarity=0.166  Sum_probs=180.6

Q ss_pred             cccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccc----
Q 012933           25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT----  100 (453)
Q Consensus        25 ~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~----  100 (453)
                      .+++|++|++++|.--...+..+.       ..+++|++|++.+|..++..........+++|++|++++|. ++.    
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~-------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~  174 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIA-------KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGH  174 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHH-------HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGG
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHH-------HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchH
Confidence            466777777777642222222221       12677777777776555442222223356777777777765 322    


Q ss_pred             -cccCccCCCCcceEEecccc----------------ccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCC-----
Q 012933          101 -FSHGILSTPKLHKVQVTEKE----------------EGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFP-----  158 (453)
Q Consensus       101 -~~~~~~~~~~L~~L~l~~~~----------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----  158 (453)
                       ++.....+++|++|+++.|.                ++..+.+.++   .....++..+..+++|++|.+..+.     
T Consensus       175 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~---~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~  251 (594)
T 2p1m_B          175 WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA---VPLEKLATLLQRAPQLEELGTGGYTAEVRP  251 (594)
T ss_dssp             GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT---SCHHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred             HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC---CcHHHHHHHHhcCCcceEcccccccCccch
Confidence             22222345667777766542                2222232222   1112233333444455555433221     


Q ss_pred             --------------CCccc---ccCC--CCCc--CccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933          159 --------------HLKEI---WHGQ--ALPV--SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV  217 (453)
Q Consensus       159 --------------~l~~~---~~~~--~l~~--~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~  217 (453)
                                    .++.+   +...  .++.  ..+++|++|++++|. ++......++..+++|+.|++++|..-..+
T Consensus       252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l  330 (594)
T 2p1m_B          252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGL  330 (594)
T ss_dssp             HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHH
T ss_pred             hhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHH
Confidence                          11111   0000  0110  136788888888876 543323334567788888888876211111


Q ss_pred             hcccccccccCCCCCCCCccceeeeccC--------CCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCC
Q 012933          218 LHLEEQNADKEHRGPLFPKLYGLRLIDL--------PKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTD  289 (453)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~--------~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~  289 (453)
                      ...         .. .+++|++|++.+|        ..+++. ........+++|+.|.+ +|..+++..... +...++
T Consensus       331 ~~l---------~~-~~~~L~~L~L~~~~~~g~~~~~~l~~~-~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~-l~~~~~  397 (594)
T 2p1m_B          331 EVL---------AS-TCKDLRELRVFPSEPFVMEPNVALTEQ-GLVSVSMGCPKLESVLY-FCRQMTNAALIT-IARNRP  397 (594)
T ss_dssp             HHH---------HH-HCTTCCEEEEECSCTTCSSCSSCCCHH-HHHHHHHHCTTCCEEEE-EESCCCHHHHHH-HHHHCT
T ss_pred             HHH---------HH-hCCCCCEEEEecCcccccccCCCCCHH-HHHHHHHhchhHHHHHH-hcCCcCHHHHHH-HHhhCC
Confidence            110         00 1277888888443        333321 00011234788888844 455555433221 122467


Q ss_pred             Cccccccc-----cccccccccccccccc-ccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCcccc
Q 012933          290 NKEPQKLT-----SEENFLLAHQVQPLFD-EKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL  363 (453)
Q Consensus       290 ~L~~L~l~-----~~~~~~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l  363 (453)
                      +|+.|+++     +|..+.-.. ....+. -...+++|+.|++++  .+++.....+.  ..+++|+.|++++|. +++.
T Consensus       398 ~L~~L~L~~~~~~~~~~l~~~~-~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~--~~~~~L~~L~L~~~~-i~~~  471 (594)
T 2p1m_B          398 NMTRFRLCIIEPKAPDYLTLEP-LDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIG--TYAKKMEMLSVAFAG-DSDL  471 (594)
T ss_dssp             TCCEEEEEESSTTCCCTTTCCC-THHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHH--HHCTTCCEEEEESCC-SSHH
T ss_pred             CcceeEeecccCCCcccccCCc-hhhHHHHHHhhCCCccEEeecC--cccHHHHHHHH--HhchhccEeeccCCC-CcHH
Confidence            88888888     343333000 000000 134578899999966  34443222210  247889999998865 4321


Q ss_pred             -CCC-CCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccch
Q 012933          364 -VPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKM  409 (453)
Q Consensus       364 -~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~  409 (453)
                       +.. ...+++|++|++++|+. .+........++++|++|++++|+.
T Consensus       472 ~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          472 GMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence             111 24578899999988765 4433223455678999999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.77  E-value=8.6e-17  Score=153.77  Aligned_cols=291  Identities=12%  Similarity=0.075  Sum_probs=175.4

Q ss_pred             ccceeeccccccccccccccccccCCCcceEeecCCCCcccccc-CccCCCCcceEEeccccccccccccCCccchhHHH
Q 012933           60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQK  138 (453)
Q Consensus        60 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  138 (453)
                      +++.+++++ ..++.++..    ..++++.|+++++. ++.++. .+..+++|++|+++++.               +..
T Consensus        32 ~l~~l~~~~-~~l~~lp~~----~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~---------------l~~   90 (330)
T 1xku_A           32 HLRVVQCSD-LGLEKVPKD----LPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK---------------ISK   90 (330)
T ss_dssp             ETTEEECTT-SCCCSCCCS----CCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC---------------CCC
T ss_pred             CCeEEEecC-CCccccCcc----CCCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCc---------------CCe
Confidence            455555554 224444332    12556666666653 444433 34556666666666431               111


Q ss_pred             H-HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933          139 C-YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV  217 (453)
Q Consensus       139 ~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~  217 (453)
                      + +..+..+++|++|+++++. +..++...      +++|++|+++++. ++.. +...+..+++|+.|+++++. +...
T Consensus        91 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~------~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~  160 (330)
T 1xku_A           91 ISPGAFAPLVKLERLYLSKNQ-LKELPEKM------PKTLQELRVHENE-ITKV-RKSVFNGLNQMIVVELGTNP-LKSS  160 (330)
T ss_dssp             BCTTTTTTCTTCCEEECCSSC-CSBCCSSC------CTTCCEEECCSSC-CCBB-CHHHHTTCTTCCEEECCSSC-CCGG
T ss_pred             eCHHHhcCCCCCCEEECCCCc-CCccChhh------cccccEEECCCCc-cccc-CHhHhcCCccccEEECCCCc-CCcc
Confidence            1 2233445666666666654 44433322      4677777777653 4333 33445666666666665542 1110


Q ss_pred             hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccc
Q 012933          218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLT  297 (453)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~  297 (453)
                                                        ...+..+..+++|+.|+++++. ++.++..   ..  ++|+.|+++
T Consensus       161 ----------------------------------~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~---~~--~~L~~L~l~  200 (330)
T 1xku_A          161 ----------------------------------GIENGAFQGMKKLSYIRIADTN-ITTIPQG---LP--PSLTELHLD  200 (330)
T ss_dssp             ----------------------------------GBCTTGGGGCTTCCEEECCSSC-CCSCCSS---CC--TTCSEEECT
T ss_pred             ----------------------------------CcChhhccCCCCcCEEECCCCc-cccCCcc---cc--ccCCEEECC
Confidence                                              0112445667788888887754 4444443   22  589999999


Q ss_pred             ccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEe
Q 012933          298 SEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALE  377 (453)
Q Consensus       298 ~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~  377 (453)
                      ++..-..      ....+..+++|++|+++++ .++.++...+   ..+++|++|++++| .++.+|..+..+++|++|+
T Consensus       201 ~n~l~~~------~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~  269 (330)
T 1xku_A          201 GNKITKV------DAASLKGLNNLAKLGLSFN-SISAVDNGSL---ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVY  269 (330)
T ss_dssp             TSCCCEE------CTGGGTTCTTCCEEECCSS-CCCEECTTTG---GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEE
T ss_pred             CCcCCcc------CHHHhcCCCCCCEEECCCC-cCceeChhhc---cCCCCCCEEECCCC-cCccCChhhccCCCcCEEE
Confidence            8742221      1123567899999999998 6888877666   78999999999995 7889999999999999999


Q ss_pred             cccCcccccccCCCccc-----ccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhh
Q 012933          378 VSKCHGLINLLTFSTSE-----SLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKN  439 (453)
Q Consensus       378 l~~c~~l~~l~~~~~~~-----~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~  439 (453)
                      +++ +.++.++...+..     ..+.++.+++.+.+.-. .     ...+.....++.++.++++++
T Consensus       270 l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~-~-----~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          270 LHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY-W-----EIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG-G-----GSCGGGGTTCCCGGGEEC---
T ss_pred             CCC-CcCCccChhhcCCcccccccccccceEeecCcccc-c-----ccCccccccccceeEEEeccc
Confidence            987 5788876643321     24788999998887321 0     011233445677788887765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.76  E-value=9.9e-18  Score=160.47  Aligned_cols=290  Identities=11%  Similarity=0.134  Sum_probs=186.0

Q ss_pred             ccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccc-ccC
Q 012933           26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF-SHG  104 (453)
Q Consensus        26 ~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~  104 (453)
                      ..+++.++++++ .++.+|..+          .+++++|+++++ .++.++.. ....+++|++|++++|. ++.+ |..
T Consensus        32 ~c~l~~l~~~~~-~l~~ip~~~----------~~~l~~L~l~~n-~i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~   97 (332)
T 2ft3_A           32 HCHLRVVQCSDL-GLKAVPKEI----------SPDTTLLDLQNN-DISELRKD-DFKGLQHLYALVLVNNK-ISKIHEKA   97 (332)
T ss_dssp             EEETTEEECCSS-CCSSCCSCC----------CTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSC-CCEECGGG
T ss_pred             cccCCEEECCCC-CccccCCCC----------CCCCeEEECCCC-cCCccCHh-HhhCCCCCcEEECCCCc-cCccCHhH
Confidence            357999999997 688888642          458999999984 46665443 25679999999999975 6654 677


Q ss_pred             ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecC
Q 012933          105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDD  184 (453)
Q Consensus       105 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~  184 (453)
                      +..+++|++|+++++.               +..++..+  +++|++|+++++. +..++... +  ..+++|++|++++
T Consensus        98 ~~~l~~L~~L~L~~n~---------------l~~l~~~~--~~~L~~L~l~~n~-i~~~~~~~-~--~~l~~L~~L~l~~  156 (332)
T 2ft3_A           98 FSPLRKLQKLYISKNH---------------LVEIPPNL--PSSLVELRIHDNR-IRKVPKGV-F--SGLRNMNCIEMGG  156 (332)
T ss_dssp             STTCTTCCEEECCSSC---------------CCSCCSSC--CTTCCEEECCSSC-CCCCCSGG-G--SSCSSCCEEECCS
T ss_pred             hhCcCCCCEEECCCCc---------------CCccCccc--cccCCEEECCCCc-cCccCHhH-h--CCCccCCEEECCC
Confidence            8889999999999652               12222222  2789999999986 55544332 2  4589999999998


Q ss_pred             CCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCc
Q 012933          185 CTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPEL  264 (453)
Q Consensus       185 c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L  264 (453)
                      +.--........+..+ +|+.|+++++. ++.++.            ..+++|++|++.++. ++.+  .+..+..+++|
T Consensus       157 n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~------------~~~~~L~~L~l~~n~-i~~~--~~~~l~~l~~L  219 (332)
T 2ft3_A          157 NPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPK------------DLPETLNELHLDHNK-IQAI--ELEDLLRYSKL  219 (332)
T ss_dssp             CCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCS------------SSCSSCSCCBCCSSC-CCCC--CTTSSTTCTTC
T ss_pred             CccccCCCCcccccCC-ccCEEECcCCC-CCccCc------------cccCCCCEEECCCCc-CCcc--CHHHhcCCCCC
Confidence            7532111223335556 89999998863 444322            234789999998864 4443  23567889999


Q ss_pred             cEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccc
Q 012933          265 QHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNK  344 (453)
Q Consensus       265 ~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  344 (453)
                      +.|+++++. +..++...  +.                              .+++|++|++++| .++.++...    .
T Consensus       220 ~~L~L~~N~-l~~~~~~~--~~------------------------------~l~~L~~L~L~~N-~l~~lp~~l----~  261 (332)
T 2ft3_A          220 YRLGLGHNQ-IRMIENGS--LS------------------------------FLPTLRELHLDNN-KLSRVPAGL----P  261 (332)
T ss_dssp             SCCBCCSSC-CCCCCTTG--GG------------------------------GCTTCCEEECCSS-CCCBCCTTG----G
T ss_pred             CEEECCCCc-CCcCChhH--hh------------------------------CCCCCCEEECCCC-cCeecChhh----h
Confidence            999999864 33333321  23                              3456666666666 455555432    5


Q ss_pred             cCCCccceeeccCCCccccCCC-CC------CCCCCCEEecccCcccc--cccCCCcccccCCcceEEEcccc
Q 012933          345 AFANLESLEISECSKLQKLVPP-SW------HLENLEALEVSKCHGLI--NLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       345 ~l~~L~~L~l~~c~~l~~l~~~-~~------~l~~L~~L~l~~c~~l~--~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                      .+++|+.|++++ +.++.++.. +.      ..++|++|++++++ +.  .++. ..+..+++|+.++++++.
T Consensus       262 ~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~-~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          262 DLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQP-ATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred             cCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCc-ccccccCc-ccccccchhhhhhccccc
Confidence            666677777776 345555542 11      14567777777644 33  2222 244567777777777664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.76  E-value=5.4e-21  Score=197.71  Aligned_cols=396  Identities=12%  Similarity=0.042  Sum_probs=197.9

Q ss_pred             CcccccceEEeccccchhh---hhcccccc----cccccccccccceeeccccccccccccccccccCCC-cceEeecCC
Q 012933           24 GIPSSLVNLNVSRCDKIEE---IIRHVGEE----AKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPS-LERVSMTHC   95 (453)
Q Consensus        24 ~~~~~L~~L~L~~c~~l~~---i~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-L~~L~l~~c   95 (453)
                      ..+++|++|++++|..+..   +|...+..    .......+++|++|+++++ .++..........++. |++|++.+|
T Consensus        70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~  148 (592)
T 3ogk_B           70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKC  148 (592)
T ss_dssp             HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred             HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCC
Confidence            4578899999999876542   22222210    0112235899999999986 3443322211222555 999999999


Q ss_pred             CCccc--cccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCC--c
Q 012933           96 PNMKT--FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALP--V  171 (453)
Q Consensus        96 ~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~--~  171 (453)
                      ..+..  ++.....+++|++|++++|.-      .+.    ....+......+++|++|+++++. +..+.... ++  .
T Consensus       149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~------~~~----~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~-l~~~~  216 (592)
T 3ogk_B          149 SGFTTDGLLSIVTHCRKIKTLLMEESSF------SEK----DGKWLHELAQHNTSLEVLNFYMTE-FAKISPKD-LETIA  216 (592)
T ss_dssp             EEEEHHHHHHHHHHCTTCSEEECTTCEE------ECC----CSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHH-HHHHH
T ss_pred             CCcCHHHHHHHHhhCCCCCEEECccccc------cCc----chhHHHHHHhcCCCccEEEeeccC-CCccCHHH-HHHHH
Confidence            75442  222234689999999998731      110    011122233456888888887665 22110000 10  1


Q ss_pred             CccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccc----------------hhhhccc-ccccccCCCCCCC
Q 012933          172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSI----------------EEVLHLE-EQNADKEHRGPLF  234 (453)
Q Consensus       172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l----------------~~~~~~~-~~~~~~~~~~~~~  234 (453)
                      ..+++|++|++++|. +... + ..+..+++|+.|++++....                +.+.... ....+......+ 
T Consensus       217 ~~~~~L~~L~L~~~~-~~~l-~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~-  292 (592)
T 3ogk_B          217 RNCRSLVSVKVGDFE-ILEL-V-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA-  292 (592)
T ss_dssp             HHCTTCCEEECSSCB-GGGG-H-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG-
T ss_pred             hhCCCCcEEeccCcc-HHHH-H-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc-
Confidence            346788888888864 3332 3 45777788888887642111                0000000 000111112223 


Q ss_pred             CccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccc----------cccccc
Q 012933          235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTS----------EENFLL  304 (453)
Q Consensus       235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~----------~~~~~~  304 (453)
                      ++|++|++.+|. ++.. .....+..+++|+.|++.++  +.+.... .+...+++|++|++++          |..+..
T Consensus       293 ~~L~~L~Ls~~~-l~~~-~~~~~~~~~~~L~~L~L~~~--~~~~~l~-~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~  367 (592)
T 3ogk_B          293 AQIRKLDLLYAL-LETE-DHCTLIQKCPNLEVLETRNV--IGDRGLE-VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ  367 (592)
T ss_dssp             GGCCEEEETTCC-CCHH-HHHHHHTTCTTCCEEEEEGG--GHHHHHH-HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred             CCCcEEecCCCc-CCHH-HHHHHHHhCcCCCEEeccCc--cCHHHHH-HHHHhCCCCCEEEeecCccccccccccCccCH
Confidence            789999998876 3321 01112355666666666522  1111100 0112234455555552          222210


Q ss_pred             c-------------------ccccc-cccccc-cCCCcCEEeecC---CCCcceeccc-CC-cccccCCCccceeeccCC
Q 012933          305 A-------------------HQVQP-LFDEKV-SFPRLRWLELSG---LHKVQHLWKE-ND-ESNKAFANLESLEISECS  358 (453)
Q Consensus       305 ~-------------------~~l~~-~~~~~~-~l~~L~~L~l~~---~~~l~~l~~~-~~-~~~~~l~~L~~L~l~~c~  358 (453)
                      .                   +.+.. .+..++ .+++|++|++++   |..+++.+.+ .+ .....+++|++|+++.|.
T Consensus       368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~  447 (592)
T 3ogk_B          368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ  447 (592)
T ss_dssp             HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred             HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence            0                   00000 001111 256777777763   3344443221 00 001457777777776655


Q ss_pred             C-cccc-CC-CCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchh
Q 012933          359 K-LQKL-VP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCET  435 (453)
Q Consensus       359 ~-l~~l-~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~  435 (453)
                      + +++. +. ....+++|++|++++| ++++.........+++|++|++++|+ +.....      ......++.|++|+
T Consensus       448 ~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~------~~~~~~l~~L~~L~  519 (592)
T 3ogk_B          448 GGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAI------AAAVTKLPSLRYLW  519 (592)
T ss_dssp             GGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHH------HHHHHHCSSCCEEE
T ss_pred             CCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHH------HHHHHhcCccCeeE
Confidence            3 2211 11 1234677788888664 35442222234567888888888887 322111      01112467788888


Q ss_pred             hhhhHHHHHHhhhhc
Q 012933          436 MSKNEDLLSRSLRHT  450 (453)
Q Consensus       436 l~~~~~~~~~~~~~~  450 (453)
                      +++|+ +++.++++.
T Consensus       520 ls~n~-it~~~~~~l  533 (592)
T 3ogk_B          520 VQGYR-ASMTGQDLM  533 (592)
T ss_dssp             EESCB-CCTTCTTGG
T ss_pred             CcCCc-CCHHHHHHH
Confidence            88887 666655543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.75  E-value=6.1e-18  Score=161.59  Aligned_cols=230  Identities=17%  Similarity=0.217  Sum_probs=131.1

Q ss_pred             ccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCc
Q 012933           26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGI  105 (453)
Q Consensus        26 ~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  105 (453)
                      .+.++.|+++++ .++.+|..++.        +++|++|+++++ .++.++..  ...+++|++|++++| .++.+|..+
T Consensus        80 ~~~l~~L~L~~n-~l~~lp~~l~~--------l~~L~~L~L~~n-~l~~lp~~--~~~l~~L~~L~Ls~n-~l~~lp~~l  146 (328)
T 4fcg_A           80 QPGRVALELRSV-PLPQFPDQAFR--------LSHLQHMTIDAA-GLMELPDT--MQQFAGLETLTLARN-PLRALPASI  146 (328)
T ss_dssp             STTCCEEEEESS-CCSSCCSCGGG--------GTTCSEEEEESS-CCCCCCSC--GGGGTTCSEEEEESC-CCCCCCGGG
T ss_pred             ccceeEEEccCC-CchhcChhhhh--------CCCCCEEECCCC-CccchhHH--HhccCCCCEEECCCC-ccccCcHHH
Confidence            467788888875 56777776655        778888888773 35544433  566778888888776 355777777


Q ss_pred             cCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCC
Q 012933          106 LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDC  185 (453)
Q Consensus       106 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c  185 (453)
                      ..+++|++|++++|..+..++-.-.  .   ..+...+.++++|++|+++++. +..++...    ..+++|++|+++++
T Consensus       147 ~~l~~L~~L~L~~n~~~~~~p~~~~--~---~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l----~~l~~L~~L~L~~N  216 (328)
T 4fcg_A          147 ASLNRLRELSIRACPELTELPEPLA--S---TDASGEHQGLVNLQSLRLEWTG-IRSLPASI----ANLQNLKSLKIRNS  216 (328)
T ss_dssp             GGCTTCCEEEEEEETTCCCCCSCSE--E---EC-CCCEEESTTCCEEEEEEEC-CCCCCGGG----GGCTTCCEEEEESS
T ss_pred             hcCcCCCEEECCCCCCccccChhHh--h---ccchhhhccCCCCCEEECcCCC-cCcchHhh----cCCCCCCEEEccCC
Confidence            7777777777776544322211100  0   0001112335667777776664 44443332    44667777777765


Q ss_pred             CCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCcc
Q 012933          186 TNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQ  265 (453)
Q Consensus       186 ~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~  265 (453)
                      . ++.. +.. +..+++|+.|++++|.....++.         ....+ ++|++|++.+|...+.+   +..+..+++|+
T Consensus       217 ~-l~~l-~~~-l~~l~~L~~L~Ls~n~~~~~~p~---------~~~~l-~~L~~L~L~~n~~~~~~---p~~~~~l~~L~  280 (328)
T 4fcg_A          217 P-LSAL-GPA-IHHLPKLEELDLRGCTALRNYPP---------IFGGR-APLKRLILKDCSNLLTL---PLDIHRLTQLE  280 (328)
T ss_dssp             C-CCCC-CGG-GGGCTTCCEEECTTCTTCCBCCC---------CTTCC-CCCCEEECTTCTTCCBC---CTTGGGCTTCC
T ss_pred             C-CCcC-chh-hccCCCCCEEECcCCcchhhhHH---------HhcCC-CCCCEEECCCCCchhhc---chhhhcCCCCC
Confidence            3 3333 322 56666677777766654443322         11112 66666666666555543   34456666666


Q ss_pred             EEeeecCCCCceeccCCcccccCCCccccccc
Q 012933          266 HLTIQNCPDMETFISNSVVHVTTDNKEPQKLT  297 (453)
Q Consensus       266 ~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~  297 (453)
                      .|++++|+..+.+|..   +..+++|+.+.+.
T Consensus       281 ~L~L~~n~~~~~iP~~---l~~L~~L~~l~l~  309 (328)
T 4fcg_A          281 KLDLRGCVNLSRLPSL---IAQLPANCIILVP  309 (328)
T ss_dssp             EEECTTCTTCCCCCGG---GGGSCTTCEEECC
T ss_pred             EEeCCCCCchhhccHH---HhhccCceEEeCC
Confidence            6666666666555544   4444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.74  E-value=1.4e-17  Score=166.10  Aligned_cols=265  Identities=15%  Similarity=0.098  Sum_probs=146.4

Q ss_pred             cccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCC-------------cceEe
Q 012933           25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPS-------------LERVS   91 (453)
Q Consensus        25 ~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-------------L~~L~   91 (453)
                      ..++|++|+++++ .++.+|..+++        +++|++|+++++.-....+..  ...+.+             +++|+
T Consensus         9 ~~~~L~~L~l~~n-~l~~iP~~i~~--------L~~L~~L~l~~n~~~~~~p~~--~~~l~~L~~l~l~~c~~~~l~~L~   77 (454)
T 1jl5_A            9 SNTFLQEPLRHSS-NLTEMPVEAEN--------VKSKTEYYNAWSEWERNAPPG--NGEQREMAVSRLRDCLDRQAHELE   77 (454)
T ss_dssp             ----------------------------------CCHHHHHHHHHHHHHTSCTT--SCCCHHHHHHHHHHHHHHTCSEEE
T ss_pred             ccccchhhhcccC-chhhCChhHhc--------ccchhhhhccCCcccccCCcc--cccchhcchhhhhhhhccCCCEEE
Confidence            3678999999996 67999998877        999999999985422233333  334443             59999


Q ss_pred             ecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCc
Q 012933           92 MTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPV  171 (453)
Q Consensus        92 l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~  171 (453)
                      +++|. ++.+|.   ..++|++|+++++.               +.+++.   .+++|++|+++++. +..++.      
T Consensus        78 l~~~~-l~~lp~---~~~~L~~L~l~~n~---------------l~~lp~---~~~~L~~L~l~~n~-l~~l~~------  128 (454)
T 1jl5_A           78 LNNLG-LSSLPE---LPPHLESLVASCNS---------------LTELPE---LPQSLKSLLVDNNN-LKALSD------  128 (454)
T ss_dssp             CTTSC-CSCCCS---CCTTCSEEECCSSC---------------CSSCCC---CCTTCCEEECCSSC-CSCCCS------
T ss_pred             ecCCc-cccCCC---CcCCCCEEEccCCc---------------CCcccc---ccCCCcEEECCCCc-cCcccC------
Confidence            99974 777765   35789999998642               112221   14788899988875 443221      


Q ss_pred             CccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCccee
Q 012933          172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF  251 (453)
Q Consensus       172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~  251 (453)
                       ..++|++|+++++. ++.+ | . +..+++|++|+++++ .++.++.             .+++|++|++.++. ++.+
T Consensus       129 -~~~~L~~L~L~~n~-l~~l-p-~-~~~l~~L~~L~l~~N-~l~~lp~-------------~~~~L~~L~L~~n~-l~~l  188 (454)
T 1jl5_A          129 -LPPLLEYLGVSNNQ-LEKL-P-E-LQNSSFLKIIDVDNN-SLKKLPD-------------LPPSLEFIAAGNNQ-LEEL  188 (454)
T ss_dssp             -CCTTCCEEECCSSC-CSSC-C-C-CTTCTTCCEEECCSS-CCSCCCC-------------CCTTCCEEECCSSC-CSSC
T ss_pred             -CCCCCCEEECcCCC-CCCC-c-c-cCCCCCCCEEECCCC-cCcccCC-------------CcccccEEECcCCc-CCcC
Confidence             12689999998864 5553 4 2 778888999998886 3444322             22678888887763 4443


Q ss_pred             ccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCC
Q 012933          252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK  331 (453)
Q Consensus       252 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~  331 (453)
                          ..+..+++|+.|+++++. ++.++..      .++|+.|+++++.- .       .+++++.+++|++|+++++ .
T Consensus       189 ----~~~~~l~~L~~L~l~~N~-l~~l~~~------~~~L~~L~l~~n~l-~-------~lp~~~~l~~L~~L~l~~N-~  248 (454)
T 1jl5_A          189 ----PELQNLPFLTAIYADNNS-LKKLPDL------PLSLESIVAGNNIL-E-------ELPELQNLPFLTTIYADNN-L  248 (454)
T ss_dssp             ----CCCTTCTTCCEEECCSSC-CSSCCCC------CTTCCEEECCSSCC-S-------SCCCCTTCTTCCEEECCSS-C
T ss_pred             ----ccccCCCCCCEEECCCCc-CCcCCCC------cCcccEEECcCCcC-C-------cccccCCCCCCCEEECCCC-c
Confidence                246777888888887764 3333322      12677777776622 1       1233456677777777776 4


Q ss_pred             cceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933          332 VQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK  380 (453)
Q Consensus       332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  380 (453)
                      ++.++       ..+++|+.|++++| .++.+|..   .++|++|++++
T Consensus       249 l~~l~-------~~~~~L~~L~l~~N-~l~~l~~~---~~~L~~L~ls~  286 (454)
T 1jl5_A          249 LKTLP-------DLPPSLEALNVRDN-YLTDLPEL---PQSLTFLDVSE  286 (454)
T ss_dssp             CSSCC-------SCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCS
T ss_pred             CCccc-------ccccccCEEECCCC-cccccCcc---cCcCCEEECcC
Confidence            44443       23356666666663 35555442   25555666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.74  E-value=2.3e-16  Score=163.96  Aligned_cols=231  Identities=17%  Similarity=0.160  Sum_probs=146.8

Q ss_pred             CccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCccee
Q 012933          172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF  251 (453)
Q Consensus       172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~  251 (453)
                      ..++.|+.+.+.+.... ..+.   ...+++|+.++++++.- ........      ... ...+|+.+++..+..... 
T Consensus       346 ~~l~~L~~l~l~~n~~~-~~~~---~~~l~~L~~L~ls~n~l-~~~~~~~~------~~~-~~~~L~~L~~~~~~~~~~-  412 (635)
T 4g8a_A          346 LKLKSLKRLTFTSNKGG-NAFS---EVDLPSLEFLDLSRNGL-SFKGCCSQ------SDF-GTISLKYLDLSFNGVITM-  412 (635)
T ss_dssp             CBCTTCCEEEEESCCSC-CBCC---CCBCTTCCEEECCSSCC-BEEEECCH------HHH-SCSCCCEEECCSCSEEEE-
T ss_pred             ccchhhhhcccccccCC-CCcc---cccccccccchhhcccc-cccccccc------chh-hhhhhhhhhccccccccc-
Confidence            45788899988875432 2222   34688899999887532 21110000      000 126788887766543222 


Q ss_pred             ccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCC
Q 012933          252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK  331 (453)
Q Consensus       252 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~  331 (453)
                         ...+..+++|+.+++.++......+...  +..+.+++.++++.+..-..      .......+++|+.|+++++..
T Consensus       413 ---~~~~~~l~~L~~l~l~~~~~~~~~~~~~--~~~l~~l~~l~ls~n~l~~~------~~~~~~~~~~L~~L~Ls~N~~  481 (635)
T 4g8a_A          413 ---SSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVA------FNGIFNGLSSLEVLKMAGNSF  481 (635)
T ss_dssp             ---CSCCTTCTTCCEEECTTSEEESTTSSCT--TTTCTTCCEEECTTSCCEEC------CTTTTTTCTTCCEEECTTCEE
T ss_pred             ---cccccccccccchhhhhccccccccccc--cccccccccccccccccccc------cccccccchhhhhhhhhhccc
Confidence               2456778888888888765444333333  56677888888877532221      011234678899999988865


Q ss_pred             cceecccCCcccccCCCccceeeccCCCccccC-CCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchh
Q 012933          332 VQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMI  410 (453)
Q Consensus       332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l  410 (453)
                      ...+..+.|   ..+++|++|++++| .++.++ ..+..+++|++|++++ ++++.++.. ....+++|++|+++++.--
T Consensus       482 ~~~~~~~~~---~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~-~~~~l~~L~~L~Ls~N~l~  555 (635)
T 4g8a_A          482 QENFLPDIF---TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTF-PYKCLNSLQVLDYSLNHIM  555 (635)
T ss_dssp             GGGEECSCC---TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT-SCCCBCCCG-GGTTCTTCCEEECTTSCCC
T ss_pred             ccccCchhh---hhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCC-CcCCCCChh-HHhCCCCCCEEECCCCcCC
Confidence            666665666   78889999999985 577664 4577889999999977 578777653 4567788999999887532


Q ss_pred             HHHHhhccCCccCCCcee-ccccchhhhhhH
Q 012933          411 EQIIQLQVGEEAKDCNVF-KELSCETMSKNE  440 (453)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~-~~l~~l~l~~~~  440 (453)
                              +..+..+..+ +.|++|+++++|
T Consensus       556 --------~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          556 --------TSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             --------BCCSSCTTCCCTTCCEEECTTCC
T ss_pred             --------CCCHHHHHhhhCcCCEEEeeCCC
Confidence                    1223334444 578888887765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.72  E-value=1.6e-16  Score=151.64  Aligned_cols=224  Identities=19%  Similarity=0.232  Sum_probs=130.5

Q ss_pred             CCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccccccc
Q 012933          146 FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNA  225 (453)
Q Consensus       146 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  225 (453)
                      .+++++|+++++. +..++...    ..+++|++|+++++. ++. +|.. +..+++|++|+++++ .+..++.      
T Consensus        80 ~~~l~~L~L~~n~-l~~lp~~l----~~l~~L~~L~L~~n~-l~~-lp~~-~~~l~~L~~L~Ls~n-~l~~lp~------  144 (328)
T 4fcg_A           80 QPGRVALELRSVP-LPQFPDQA----FRLSHLQHMTIDAAG-LME-LPDT-MQQFAGLETLTLARN-PLRALPA------  144 (328)
T ss_dssp             STTCCEEEEESSC-CSSCCSCG----GGGTTCSEEEEESSC-CCC-CCSC-GGGGTTCSEEEEESC-CCCCCCG------
T ss_pred             ccceeEEEccCCC-chhcChhh----hhCCCCCEEECCCCC-ccc-hhHH-HhccCCCCEEECCCC-ccccCcH------
Confidence            3556666666554 44444332    335666666666543 332 2322 455666666666654 2223221      


Q ss_pred             ccCCCCCCCCccceeeeccCCCcceeccC------CCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccc
Q 012933          226 DKEHRGPLFPKLYGLRLIDLPKLKRFCNF------TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSE  299 (453)
Q Consensus       226 ~~~~~~~~~~~L~~L~L~~~~~l~~~~~~------~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~  299 (453)
                         ....+ ++|++|++.+|..++.++..      ...+..+++|+.|+++++ .++.+|..   +..+++|+.|+++++
T Consensus       145 ---~l~~l-~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~---l~~l~~L~~L~L~~N  216 (328)
T 4fcg_A          145 ---SIASL-NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS---IANLQNLKSLKIRNS  216 (328)
T ss_dssp             ---GGGGC-TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG---GGGCTTCCEEEEESS
T ss_pred             ---HHhcC-cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh---hcCCCCCCEEEccCC
Confidence               01112 55666666665544443210      112344777777777775 33444433   556667777777665


Q ss_pred             ccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecc
Q 012933          300 ENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVS  379 (453)
Q Consensus       300 ~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~  379 (453)
                      .--.       ..+.++.+++|++|++++|.....++.. +   ..+++|++|++++|+..+.+|..+..+++|++|+++
T Consensus       217 ~l~~-------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~---~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~  285 (328)
T 4fcg_A          217 PLSA-------LGPAIHHLPKLEELDLRGCTALRNYPPI-F---GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR  285 (328)
T ss_dssp             CCCC-------CCGGGGGCTTCCEEECTTCTTCCBCCCC-T---TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred             CCCc-------CchhhccCCCCCEEECcCCcchhhhHHH-h---cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence            3211       1123456778888888887555555443 3   677888888888887777788777788888888888


Q ss_pred             cCcccccccCCCcccccCCcceEEEc
Q 012933          380 KCHGLINLLTFSTSESLVNLGRMMIA  405 (453)
Q Consensus       380 ~c~~l~~l~~~~~~~~l~~L~~L~i~  405 (453)
                      +|+.+..+|.  ...++++|+.+++.
T Consensus       286 ~n~~~~~iP~--~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          286 GCVNLSRLPS--LIAQLPANCIILVP  309 (328)
T ss_dssp             TCTTCCCCCG--GGGGSCTTCEEECC
T ss_pred             CCCchhhccH--HHhhccCceEEeCC
Confidence            8777777765  45677777777765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.69  E-value=1.5e-16  Score=150.90  Aligned_cols=255  Identities=12%  Similarity=0.078  Sum_probs=133.5

Q ss_pred             CCcceEeecCCCCcc--ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcc
Q 012933           85 PSLERVSMTHCPNMK--TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE  162 (453)
Q Consensus        85 ~~L~~L~l~~c~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  162 (453)
                      .+++.|+++++.--.  .+|..+..+++|++|+++++..             ....++..+..+++|++|+++++.-...
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-------------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  116 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-------------LVGPIPPAIAKLTQLHYLYITHTNVSGA  116 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-------------EESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-------------ccccCChhHhcCCCCCEEECcCCeeCCc
Confidence            567788887764333  5677777778888888774221             1123344556677778888777762223


Q ss_pred             cccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeee
Q 012933          163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL  242 (453)
Q Consensus       163 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L  242 (453)
                      ++...    ..+++|++|+++++. +++..|.. +..+++|++|+++++.-...++.         ......++|++|++
T Consensus       117 ~p~~~----~~l~~L~~L~Ls~N~-l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~---------~l~~l~~~L~~L~L  181 (313)
T 1ogq_A          117 IPDFL----SQIKTLVTLDFSYNA-LSGTLPPS-ISSLPNLVGITFDGNRISGAIPD---------SYGSFSKLFTSMTI  181 (313)
T ss_dssp             CCGGG----GGCTTCCEEECCSSE-EESCCCGG-GGGCTTCCEEECCSSCCEEECCG---------GGGCCCTTCCEEEC
T ss_pred             CCHHH----hCCCCCCEEeCCCCc-cCCcCChH-HhcCCCCCeEECcCCcccCcCCH---------HHhhhhhcCcEEEC
Confidence            33322    457778888887753 44333433 66777888888777532212211         01112126777777


Q ss_pred             ccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcC
Q 012933          243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLR  322 (453)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~  322 (453)
                      .++. ++..  .+..+..++ |+.|+++++. +.......  +..+++|+.|+++++.-..       .++....+++|+
T Consensus       182 ~~N~-l~~~--~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~--~~~l~~L~~L~L~~N~l~~-------~~~~~~~l~~L~  247 (313)
T 1ogq_A          182 SRNR-LTGK--IPPTFANLN-LAFVDLSRNM-LEGDASVL--FGSDKNTQKIHLAKNSLAF-------DLGKVGLSKNLN  247 (313)
T ss_dssp             CSSE-EEEE--CCGGGGGCC-CSEEECCSSE-EEECCGGG--CCTTSCCSEEECCSSEECC-------BGGGCCCCTTCC
T ss_pred             cCCe-eecc--CChHHhCCc-ccEEECcCCc-ccCcCCHH--HhcCCCCCEEECCCCceee-------ecCcccccCCCC
Confidence            6654 2221  234455554 7777777653 22222211  4455556666665542211       112233455666


Q ss_pred             EEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCccccc
Q 012933          323 WLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLIN  386 (453)
Q Consensus       323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~  386 (453)
                      +|++++| .++......+   ..+++|++|+++++.-...+|.. ..+++|+.+++++.+.+..
T Consensus       248 ~L~Ls~N-~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          248 GLDLRNN-RIYGTLPQGL---TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             EEECCSS-CCEECCCGGG---GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             EEECcCC-cccCcCChHH---hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            6666665 3442222222   45566666666663322234433 4555666666655444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.67  E-value=9.6e-17  Score=152.26  Aligned_cols=255  Identities=11%  Similarity=0.032  Sum_probs=120.6

Q ss_pred             cccceEEeccccchh--hhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccC
Q 012933           27 SSLVNLNVSRCDKIE--EIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHG  104 (453)
Q Consensus        27 ~~L~~L~L~~c~~l~--~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  104 (453)
                      .+++.|+++++.--+  .+|..+..        +++|++|+++++..+...... ....+++|++|+++++.-...+|..
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~--------l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~  120 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLAN--------LPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDF  120 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGG--------CTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGG
T ss_pred             ceEEEEECCCCCccCCcccChhHhC--------CCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHH
Confidence            456666666653222  45554444        666666666643444322221 1445666666666665422255555


Q ss_pred             ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccC-CCcEEEec
Q 012933          105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFN-NLARLVVD  183 (453)
Q Consensus       105 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~-~L~~L~l~  183 (453)
                      +..+++|++|+++++.              ....++..+..+++|++|+++++.-...++...    ..++ +|++|+++
T Consensus       121 ~~~l~~L~~L~Ls~N~--------------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l----~~l~~~L~~L~L~  182 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYNA--------------LSGTLPPSISSLPNLVGITFDGNRISGAIPDSY----GSFSKLFTSMTIS  182 (313)
T ss_dssp             GGGCTTCCEEECCSSE--------------EESCCCGGGGGCTTCCEEECCSSCCEEECCGGG----GCCCTTCCEEECC
T ss_pred             HhCCCCCCEEeCCCCc--------------cCCcCChHHhcCCCCCeEECcCCcccCcCCHHH----hhhhhcCcEEECc
Confidence            5556666666665421              001222333444555555555544111222211    1233 45555555


Q ss_pred             CCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCC
Q 012933          184 DCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPE  263 (453)
Q Consensus       184 ~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~  263 (453)
                      ++. +++..+.. +..++ |+.|++++                                  +. ++..  .+..+..+++
T Consensus       183 ~N~-l~~~~~~~-~~~l~-L~~L~Ls~----------------------------------N~-l~~~--~~~~~~~l~~  222 (313)
T 1ogq_A          183 RNR-LTGKIPPT-FANLN-LAFVDLSR----------------------------------NM-LEGD--ASVLFGSDKN  222 (313)
T ss_dssp             SSE-EEEECCGG-GGGCC-CSEEECCS----------------------------------SE-EEEC--CGGGCCTTSC
T ss_pred             CCe-eeccCChH-HhCCc-ccEEECcC----------------------------------Cc-ccCc--CCHHHhcCCC
Confidence            432 22222222 33333 44444444                                  32 2211  1233444555


Q ss_pred             ccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc-eecccCCcc
Q 012933          264 LQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ-HLWKENDES  342 (453)
Q Consensus       264 L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~-~l~~~~~~~  342 (453)
                      |+.|+++++..-...+.    +..+++|+.|+++++.-...      ....+..+++|++|++++| .++ .+|..    
T Consensus       223 L~~L~L~~N~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~------~p~~l~~l~~L~~L~Ls~N-~l~~~ip~~----  287 (313)
T 1ogq_A          223 TQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRNNRIYGT------LPQGLTQLKFLHSLNVSFN-NLCGEIPQG----  287 (313)
T ss_dssp             CSEEECCSSEECCBGGG----CCCCTTCCEEECCSSCCEEC------CCGGGGGCTTCCEEECCSS-EEEEECCCS----
T ss_pred             CCEEECCCCceeeecCc----ccccCCCCEEECcCCcccCc------CChHHhcCcCCCEEECcCC-cccccCCCC----
Confidence            55555555432111111    23344555555555422110      0122456788888888888 444 34332    


Q ss_pred             cccCCCccceeeccCCCccccC
Q 012933          343 NKAFANLESLEISECSKLQKLV  364 (453)
Q Consensus       343 ~~~l~~L~~L~l~~c~~l~~l~  364 (453)
                       ..+++|+.+++.+++.+...|
T Consensus       288 -~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          288 -GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             -TTGGGSCGGGTCSSSEEESTT
T ss_pred             -ccccccChHHhcCCCCccCCC
Confidence             578888888888876565544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.67  E-value=5.9e-16  Score=149.39  Aligned_cols=235  Identities=14%  Similarity=0.152  Sum_probs=126.7

Q ss_pred             CCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccc
Q 012933          145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN  224 (453)
Q Consensus       145 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  224 (453)
                      .+++|++|+++++. +..+.... +  ..+++|++|+++++. ++.. +...+..+++|++|+++++ .+..++...   
T Consensus        74 ~l~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~l~~~~---  143 (353)
T 2z80_A           74 RCVNLQALVLTSNG-INTIEEDS-F--SSLGSLEHLDLSYNY-LSNL-SSSWFKPLSSLTFLNLLGN-PYKTLGETS---  143 (353)
T ss_dssp             TCTTCCEEECTTSC-CCEECTTT-T--TTCTTCCEEECCSSC-CSSC-CHHHHTTCTTCSEEECTTC-CCSSSCSSC---
T ss_pred             cCCCCCEEECCCCc-cCccCHhh-c--CCCCCCCEEECCCCc-CCcC-CHhHhCCCccCCEEECCCC-CCcccCchh---
Confidence            34555555554443 33332221 1  335667777776653 4433 4444666777777777664 233322100   


Q ss_pred             cccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccc
Q 012933          225 ADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLL  304 (453)
Q Consensus       225 ~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  304 (453)
                          ... .+++|++|++.++..++.+  .+..+..+++|+.|+++++. +.......  +..+++|+.|+++++..-.+
T Consensus       144 ----~~~-~l~~L~~L~l~~n~~~~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~--l~~l~~L~~L~l~~n~l~~~  213 (353)
T 2z80_A          144 ----LFS-HLTKLQILRVGNMDTFTKI--QRKDFAGLTFLEELEIDASD-LQSYEPKS--LKSIQNVSHLILHMKQHILL  213 (353)
T ss_dssp             ----SCT-TCTTCCEEEEEESSSCCEE--CTTTTTTCCEEEEEEEEETT-CCEECTTT--TTTCSEEEEEEEECSCSTTH
T ss_pred             ----hhc-cCCCCcEEECCCCcccccc--CHHHccCCCCCCEEECCCCC-cCccCHHH--HhccccCCeecCCCCccccc
Confidence                111 1266777777766555554  23456667777777777754 33332222  56666777777766532110


Q ss_pred             cccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCC----CccccCCCCCCCCCCCEEeccc
Q 012933          305 AHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECS----KLQKLVPPSWHLENLEALEVSK  380 (453)
Q Consensus       305 ~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~----~l~~l~~~~~~l~~L~~L~l~~  380 (453)
                      ..      .....+++|++|+++++ .++.++...++.....+.++.+++.++.    .+..+|..+..+++|++|++++
T Consensus       214 ~~------~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~  286 (353)
T 2z80_A          214 LE------IFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR  286 (353)
T ss_dssp             HH------HHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred             hh------hhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence            00      01124678888888777 4555443333222345566666666642    1223555566778888888877


Q ss_pred             CcccccccCCCcccccCCcceEEEcccc
Q 012933          381 CHGLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       381 c~~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                       ++++.+|.. ....+++|++|++++++
T Consensus       287 -N~l~~i~~~-~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          287 -NQLKSVPDG-IFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             -SCCCCCCTT-TTTTCTTCCEEECCSSC
T ss_pred             -CCCCccCHH-HHhcCCCCCEEEeeCCC
Confidence             467776653 34567888888887654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.67  E-value=5.3e-15  Score=147.13  Aligned_cols=203  Identities=16%  Similarity=0.155  Sum_probs=108.4

Q ss_pred             cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (453)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~  253 (453)
                      +++|++|+++++. ++.. +...+..+++|+.|+++++ .++.++..        ... .+++|++|++.++. ++.++ 
T Consensus        87 l~~L~~L~Ls~n~-i~~i-~~~~~~~l~~L~~L~L~~n-~l~~~~~~--------~~~-~l~~L~~L~L~~N~-i~~~~-  152 (440)
T 3zyj_A           87 LRHLEILQLSRNH-IRTI-EIGAFNGLANLNTLELFDN-RLTTIPNG--------AFV-YLSKLKELWLRNNP-IESIP-  152 (440)
T ss_dssp             CSSCCEEECCSSC-CCEE-CGGGGTTCSSCCEEECCSS-CCSSCCTT--------TSC-SCSSCCEEECCSCC-CCEEC-
T ss_pred             CCCCCEEECCCCc-CCcc-ChhhccCCccCCEEECCCC-cCCeeCHh--------Hhh-ccccCceeeCCCCc-ccccC-
Confidence            4555555555432 3332 2233445555555555553 23322110        011 11555555555443 33331 


Q ss_pred             CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc
Q 012933          254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ  333 (453)
Q Consensus       254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~  333 (453)
                       +..+..+++|+.|++++|..+..++...  +..+++|+.|+++++.--        .++.+..+++|++|++++| .++
T Consensus       153 -~~~~~~l~~L~~L~l~~~~~l~~i~~~~--~~~l~~L~~L~L~~n~l~--------~~~~~~~l~~L~~L~Ls~N-~l~  220 (440)
T 3zyj_A          153 -SYAFNRIPSLRRLDLGELKRLSYISEGA--FEGLSNLRYLNLAMCNLR--------EIPNLTPLIKLDELDLSGN-HLS  220 (440)
T ss_dssp             -TTTTTTCTTCCEEECCCCTTCCEECTTT--TTTCSSCCEEECTTSCCS--------SCCCCTTCSSCCEEECTTS-CCC
T ss_pred             -HHHhhhCcccCEeCCCCCCCcceeCcch--hhcccccCeecCCCCcCc--------cccccCCCcccCEEECCCC-ccC
Confidence             2345555666666666655555555443  555556666666554211        1223445667777777777 566


Q ss_pred             eecccCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933          334 HLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                      .+....|   ..+++|+.|++++ +.++.++. .+..+++|++|++++ ++++.++.. ....+++|++|++.+.+
T Consensus       221 ~~~~~~~---~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          221 AIRPGSF---QGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHD-LFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             EECTTTT---TTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTT-TTSSCTTCCEEECCSSC
T ss_pred             ccChhhh---ccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCC-CCCCccChh-HhccccCCCEEEcCCCC
Confidence            6665555   6777777777777 34555543 456677777777766 466666543 34556777777776543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.66  E-value=3.3e-16  Score=151.19  Aligned_cols=275  Identities=14%  Similarity=0.109  Sum_probs=156.8

Q ss_pred             ccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccc-ccC
Q 012933           26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF-SHG  104 (453)
Q Consensus        26 ~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~  104 (453)
                      |+.....+.++. .++.+|.++          .++|++|+++++ .++.++... ...+++|++|+++++ +++.+ +..
T Consensus        30 C~~~~~c~~~~~-~l~~iP~~~----------~~~L~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~   95 (353)
T 2z80_A           30 CDRNGICKGSSG-SLNSIPSGL----------TEAVKSLDLSNN-RITYISNSD-LQRCVNLQALVLTSN-GINTIEEDS   95 (353)
T ss_dssp             ECTTSEEECCST-TCSSCCTTC----------CTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCEECTTT
T ss_pred             CCCCeEeeCCCC-Ccccccccc----------cccCcEEECCCC-cCcccCHHH-hccCCCCCEEECCCC-ccCccCHhh
Confidence            555556677664 677777642          347888888883 466655432 567888999999887 45554 345


Q ss_pred             ccCCCCcceEEeccccccccccccCCccchhHHHHHH-hhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEec
Q 012933          105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE-EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVD  183 (453)
Q Consensus       105 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~  183 (453)
                      +..+++|++|+++++.               +..++. .+..+++|++|+++++. +..++....+  ..+++|++|+++
T Consensus        96 ~~~l~~L~~L~Ls~n~---------------l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~--~~l~~L~~L~l~  157 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNY---------------LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLF--SHLTKLQILRVG  157 (353)
T ss_dssp             TTTCTTCCEEECCSSC---------------CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSC--TTCTTCCEEEEE
T ss_pred             cCCCCCCCEEECCCCc---------------CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhh--ccCCCCcEEECC
Confidence            6678888888888542               122222 24556778888877765 4444431102  346777777777


Q ss_pred             CCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCC
Q 012933          184 DCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPE  263 (453)
Q Consensus       184 ~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~  263 (453)
                      ++..+....+ ..+..+++|+.|+++++. +..+..        .....+ ++|++|++.++. ++.++  ...+..+++
T Consensus       158 ~n~~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~--------~~l~~l-~~L~~L~l~~n~-l~~~~--~~~~~~~~~  223 (353)
T 2z80_A          158 NMDTFTKIQR-KDFAGLTFLEELEIDASD-LQSYEP--------KSLKSI-QNVSHLILHMKQ-HILLL--EIFVDVTSS  223 (353)
T ss_dssp             ESSSCCEECT-TTTTTCCEEEEEEEEETT-CCEECT--------TTTTTC-SEEEEEEEECSC-STTHH--HHHHHHTTT
T ss_pred             CCccccccCH-HHccCCCCCCEEECCCCC-cCccCH--------HHHhcc-ccCCeecCCCCc-cccch--hhhhhhccc
Confidence            7655554422 336667777777776653 222211        011112 566666666553 22221  112334666


Q ss_pred             ccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcce-----eccc
Q 012933          264 LQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH-----LWKE  338 (453)
Q Consensus       264 L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~~  338 (453)
                      |+.|+++++. ++..+...                             ++.....+.++.++++++ .+.+     ++..
T Consensus       224 L~~L~L~~n~-l~~~~~~~-----------------------------l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~  272 (353)
T 2z80_A          224 VECLELRDTD-LDTFHFSE-----------------------------LSTGETNSLIKKFTFRNV-KITDESLFQVMKL  272 (353)
T ss_dssp             EEEEEEESCB-CTTCCCC-----------------------------------CCCCCCEEEEESC-BCCHHHHHHHHHH
T ss_pred             ccEEECCCCc-cccccccc-----------------------------cccccccchhhccccccc-cccCcchhhhHHH
Confidence            6666666643 22211110                             011123356666666665 2322     2221


Q ss_pred             CCcccccCCCccceeeccCCCccccCCCC-CCCCCCCEEecccCc
Q 012933          339 NDESNKAFANLESLEISECSKLQKLVPPS-WHLENLEALEVSKCH  382 (453)
Q Consensus       339 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~  382 (453)
                       +   ..+++|++|++++ +.++.+|..+ ..+++|++|++++++
T Consensus       273 -l---~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          273 -L---NQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             -H---HTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -H---hcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence             2   5778888888888 4677887764 678888888887753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.65  E-value=7.7e-15  Score=151.11  Aligned_cols=75  Identities=21%  Similarity=0.169  Sum_probs=40.1

Q ss_pred             CCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCC
Q 012933          319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVN  398 (453)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~  398 (453)
                      ++|++|++++| .++.++       ..+++|+.|++++ +.++.+|.   .+++|++|++++ ++++.+|.  ....+++
T Consensus       221 ~~L~~L~Ls~N-~L~~lp-------~~l~~L~~L~Ls~-N~L~~lp~---~~~~L~~L~Ls~-N~L~~lp~--~l~~l~~  285 (622)
T 3g06_A          221 SGLKELIVSGN-RLTSLP-------VLPSELKELMVSG-NRLTSLPM---LPSGLLSLSVYR-NQLTRLPE--SLIHLSS  285 (622)
T ss_dssp             TTCCEEECCSS-CCSCCC-------CCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCS-SCCCSCCG--GGGGSCT
T ss_pred             CCCCEEEccCC-ccCcCC-------CCCCcCcEEECCC-CCCCcCCc---ccccCcEEeCCC-CCCCcCCH--HHhhccc
Confidence            55666666555 444443       2345566666666 34555554   345566666655 34555543  2445566


Q ss_pred             cceEEEcccc
Q 012933          399 LGRMMIADCK  408 (453)
Q Consensus       399 L~~L~i~~C~  408 (453)
                      |+.|++++++
T Consensus       286 L~~L~L~~N~  295 (622)
T 3g06_A          286 ETTVNLEGNP  295 (622)
T ss_dssp             TCEEECCSCC
T ss_pred             cCEEEecCCC
Confidence            6666666555

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.65  E-value=8.4e-15  Score=146.20  Aligned_cols=243  Identities=18%  Similarity=0.185  Sum_probs=116.1

Q ss_pred             cceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHH-HHhhcCCCCccEEEEeeCCCCccccc
Q 012933           87 LERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEEMIGFRDMEYLQLSYFPHLKEIWH  165 (453)
Q Consensus        87 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~  165 (453)
                      .+.++..+ ..++.+|.++  .+++++|+++++.               +..+ +..+..+++|++|+++++. +..+..
T Consensus        56 ~~~v~c~~-~~l~~iP~~~--~~~l~~L~L~~n~---------------i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~  116 (452)
T 3zyi_A           56 FSKVVCTR-RGLSEVPQGI--PSNTRYLNLMENN---------------IQMIQADTFRHLHHLEVLQLGRNS-IRQIEV  116 (452)
T ss_dssp             SCEEECCS-SCCSSCCSCC--CTTCSEEECCSSC---------------CCEECTTTTTTCTTCCEEECCSSC-CCEECT
T ss_pred             CcEEEECC-CCcCccCCCC--CCCccEEECcCCc---------------CceECHHHcCCCCCCCEEECCCCc-cCCcCh
Confidence            34555544 3466666543  2567777776431               1111 2233445556666655553 333322


Q ss_pred             CCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccC
Q 012933          166 GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL  245 (453)
Q Consensus       166 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  245 (453)
                      .. +  ..+++|++|+++++. ++.. +...+..+++|++|+++++                                  
T Consensus       117 ~~-~--~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~N----------------------------------  157 (452)
T 3zyi_A          117 GA-F--NGLASLNTLELFDNW-LTVI-PSGAFEYLSKLRELWLRNN----------------------------------  157 (452)
T ss_dssp             TT-T--TTCTTCCEEECCSSC-CSBC-CTTTSSSCTTCCEEECCSC----------------------------------
T ss_pred             hh-c--cCcccCCEEECCCCc-CCcc-ChhhhcccCCCCEEECCCC----------------------------------
Confidence            21 1  235555555555542 3332 2333445555555555553                                  


Q ss_pred             CCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEe
Q 012933          246 PKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLE  325 (453)
Q Consensus       246 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~  325 (453)
                      . ++.++  +..+..+++|+.|++++|..++.++...  +..+++|+.|+++++.--        .++.+..+++|++|+
T Consensus       158 ~-l~~~~--~~~~~~l~~L~~L~l~~~~~l~~i~~~~--~~~l~~L~~L~L~~n~l~--------~~~~~~~l~~L~~L~  224 (452)
T 3zyi_A          158 P-IESIP--SYAFNRVPSLMRLDLGELKKLEYISEGA--FEGLFNLKYLNLGMCNIK--------DMPNLTPLVGLEELE  224 (452)
T ss_dssp             C-CCEEC--TTTTTTCTTCCEEECCCCTTCCEECTTT--TTTCTTCCEEECTTSCCS--------SCCCCTTCTTCCEEE
T ss_pred             C-cceeC--HhHHhcCCcccEEeCCCCCCccccChhh--ccCCCCCCEEECCCCccc--------ccccccccccccEEE
Confidence            2 22221  1233444444444444444444444332  344444444444443111        112234455666666


Q ss_pred             ecCCCCcceecccCCcccccCCCccceeeccCCCccccC-CCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEE
Q 012933          326 LSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMI  404 (453)
Q Consensus       326 l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i  404 (453)
                      ++++ .++.+....|   ..+++|+.|+++++ .++.++ ..+..+++|++|++++ ++++.++.. ....+++|++|++
T Consensus       225 Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~L  297 (452)
T 3zyi_A          225 MSGN-HFPEIRPGSF---HGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAH-NNLSSLPHD-LFTPLRYLVELHL  297 (452)
T ss_dssp             CTTS-CCSEECGGGG---TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCTT-SSTTCTTCCEEEC
T ss_pred             CcCC-cCcccCcccc---cCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCC-CcCCccChH-HhccccCCCEEEc
Confidence            6665 4555544444   56666666666663 344443 3455566666666655 355555442 3345566666666


Q ss_pred             ccc
Q 012933          405 ADC  407 (453)
Q Consensus       405 ~~C  407 (453)
                      .++
T Consensus       298 ~~N  300 (452)
T 3zyi_A          298 HHN  300 (452)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.64  E-value=4.3e-18  Score=170.42  Aligned_cols=376  Identities=15%  Similarity=0.104  Sum_probs=213.8

Q ss_pred             cCcccccceEEeccccchh-----hhhcccccccccccccccccceeeccccccccccccccccccCC----CcceEeec
Q 012933           23 VGIPSSLVNLNVSRCDKIE-----EIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFP----SLERVSMT   93 (453)
Q Consensus        23 ~~~~~~L~~L~L~~c~~l~-----~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~----~L~~L~l~   93 (453)
                      +..+++|++|++++|. ++     .++..+..        +++|++|+++++. +...........++    +|++|+++
T Consensus        24 ~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~--------~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~   93 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCG-LTEARCKDISSALRV--------NPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQ   93 (461)
T ss_dssp             HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHT--------CTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECT
T ss_pred             HhhcCCccEEEccCCC-CCHHHHHHHHHHHHh--------CCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEcc
Confidence            5668999999999985 54     33443333        7899999999843 44322221122344    79999999


Q ss_pred             CCCCcc-----ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhh-cCCCCccEEEEeeCCCCcccccCC
Q 012933           94 HCPNMK-----TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEM-IGFRDMEYLQLSYFPHLKEIWHGQ  167 (453)
Q Consensus        94 ~c~~l~-----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~  167 (453)
                      +|. ++     .++..+..+++|++|+++++. +.         ......+...+ ...++|++|+++++. +.......
T Consensus        94 ~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~---------~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~  161 (461)
T 1z7x_W           94 NCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LG---------DAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEP  161 (461)
T ss_dssp             TSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CH---------HHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH
T ss_pred             CCC-CCHHHHHHHHHHHccCCceeEEECCCCc-Cc---------hHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHH
Confidence            985 54     456777889999999999753 10         01122223222 235679999998885 43311100


Q ss_pred             CCC--cCccCCCcEEEecCCCCccccCchhHHh----hcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceee
Q 012933          168 ALP--VSFFNNLARLVVDDCTNMSSAIPANLLR----CLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLR  241 (453)
Q Consensus       168 ~l~--~~~l~~L~~L~l~~c~~l~~~~~~~~l~----~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  241 (453)
                       ++  ...+++|++|+++++. +.......+..    ..++|++|++++|. +......    .+....... ++|++|+
T Consensus       162 -l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~----~l~~~l~~~-~~L~~L~  233 (461)
T 1z7x_W          162 -LASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCR----DLCGIVASK-ASLRELA  233 (461)
T ss_dssp             -HHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHH----HHHHHHHHC-TTCCEEE
T ss_pred             -HHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHH----HHHHHHHhC-CCccEEe
Confidence             10  1346899999999875 44322222122    25689999999873 3331100    000001113 7899999


Q ss_pred             eccCCCcceec--c-CCCcccCCCCccEEeeecCCCCce-----eccCCcccccCCCccccccccccccccccccccccc
Q 012933          242 LIDLPKLKRFC--N-FTGNIIELPELQHLTIQNCPDMET-----FISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFD  313 (453)
Q Consensus       242 L~~~~~l~~~~--~-~~~~~~~l~~L~~L~l~~c~~l~~-----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~  313 (453)
                      +.++. +++..  . .+.....+++|+.|++++| .++.     ++..   +..+++|+.|+++++.--..+   ...+.
T Consensus       234 Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~---l~~~~~L~~L~Ls~n~i~~~~---~~~l~  305 (461)
T 1z7x_W          234 LGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRV---LRAKESLKELSLAGNELGDEG---ARLLC  305 (461)
T ss_dssp             CCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHH---HHHCTTCCEEECTTCCCHHHH---HHHHH
T ss_pred             ccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHH---HhhCCCcceEECCCCCCchHH---HHHHH
Confidence            98873 43310  0 0112335789999999987 4444     2222   455778999999887321100   00000


Q ss_pred             c-c-ccCCCcCEEeecCCCCcceecccCCc-ccccCCCccceeeccCCCccccC-----CCCC-CCCCCCEEecccCccc
Q 012933          314 E-K-VSFPRLRWLELSGLHKVQHLWKENDE-SNKAFANLESLEISECSKLQKLV-----PPSW-HLENLEALEVSKCHGL  384 (453)
Q Consensus       314 ~-~-~~l~~L~~L~l~~~~~l~~l~~~~~~-~~~~l~~L~~L~l~~c~~l~~l~-----~~~~-~l~~L~~L~l~~c~~l  384 (453)
                      + . ...++|++|++++| .++......++ ....+++|++|++++| .+++..     ..+. ..++|++|++++| .+
T Consensus       306 ~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i  382 (461)
T 1z7x_W          306 ETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DV  382 (461)
T ss_dssp             HHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CC
T ss_pred             HHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CC
Confidence            0 0 12369999999998 35443211111 1156789999999996 455432     1111 2679999999886 56


Q ss_pred             cc-----ccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhHH
Q 012933          385 IN-----LLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNED  441 (453)
Q Consensus       385 ~~-----l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~  441 (453)
                      ++     ++.  ....+++|++|++++|+--..-...-..........++.|+.++.+..+.
T Consensus       383 ~~~~~~~l~~--~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~  442 (461)
T 1z7x_W          383 SDSSCSSLAA--TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  442 (461)
T ss_dssp             CHHHHHHHHH--HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             ChhhHHHHHH--HHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence            63     332  34467899999999886321110000000112233456666666555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.64  E-value=6.1e-15  Score=151.88  Aligned_cols=256  Identities=18%  Similarity=0.123  Sum_probs=175.5

Q ss_pred             cccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCcc
Q 012933           27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL  106 (453)
Q Consensus        27 ~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  106 (453)
                      .+++.|+++++ .++.+|..+          .++|++|+++++ +++.++.     .+++|++|++++|. ++.+|.   
T Consensus        40 ~~l~~L~ls~n-~L~~lp~~l----------~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~---   98 (622)
T 3g06_A           40 NGNAVLNVGES-GLTTLPDCL----------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGNQ-LTSLPV---   98 (622)
T ss_dssp             HCCCEEECCSS-CCSCCCSCC----------CTTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSCC-CSCCCC---
T ss_pred             CCCcEEEecCC-CcCccChhh----------CCCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCCc-CCcCCC---
Confidence            35888898886 677777642          258889998884 4665543     46889999998874 777775   


Q ss_pred             CCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCC
Q 012933          107 STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT  186 (453)
Q Consensus       107 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~  186 (453)
                      .+++|++|+++++.               +..++.   .+++|++|+++++. +..++.       .+++|++|++++| 
T Consensus        99 ~l~~L~~L~Ls~N~---------------l~~l~~---~l~~L~~L~L~~N~-l~~lp~-------~l~~L~~L~Ls~N-  151 (622)
T 3g06_A           99 LPPGLLELSIFSNP---------------LTHLPA---LPSGLCKLWIFGNQ-LTSLPV-------LPPGLQELSVSDN-  151 (622)
T ss_dssp             CCTTCCEEEECSCC---------------CCCCCC---CCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSS-
T ss_pred             CCCCCCEEECcCCc---------------CCCCCC---CCCCcCEEECCCCC-CCcCCC-------CCCCCCEEECcCC-
Confidence            67888889888642               112222   36788888888875 554332       2488999999886 


Q ss_pred             CccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccE
Q 012933          187 NMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQH  266 (453)
Q Consensus       187 ~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~  266 (453)
                      .++.+ +.    .+++|+.|+++++ .++.++             ..+++|++|++.++. ++.++   .   .+++|+.
T Consensus       152 ~l~~l-~~----~~~~L~~L~L~~N-~l~~l~-------------~~~~~L~~L~Ls~N~-l~~l~---~---~~~~L~~  205 (622)
T 3g06_A          152 QLASL-PA----LPSELCKLWAYNN-QLTSLP-------------MLPSGLQELSVSDNQ-LASLP---T---LPSELYK  205 (622)
T ss_dssp             CCSCC-CC----CCTTCCEEECCSS-CCSCCC-------------CCCTTCCEEECCSSC-CSCCC---C---CCTTCCE
T ss_pred             cCCCc-CC----ccCCCCEEECCCC-CCCCCc-------------ccCCCCcEEECCCCC-CCCCC---C---ccchhhE
Confidence            35443 21    3577888888875 444432             134788888888764 44432   1   2478888


Q ss_pred             EeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccC
Q 012933          267 LTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAF  346 (453)
Q Consensus       267 L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l  346 (453)
                      |+++++. ++.++..      +++|+.|+++++. +.       .++  ..+++|++|++++| .++.++.       .+
T Consensus       206 L~L~~N~-l~~l~~~------~~~L~~L~Ls~N~-L~-------~lp--~~l~~L~~L~Ls~N-~L~~lp~-------~~  260 (622)
T 3g06_A          206 LWAYNNR-LTSLPAL------PSGLKELIVSGNR-LT-------SLP--VLPSELKELMVSGN-RLTSLPM-------LP  260 (622)
T ss_dssp             EECCSSC-CSSCCCC------CTTCCEEECCSSC-CS-------CCC--CCCTTCCEEECCSS-CCSCCCC-------CC
T ss_pred             EECcCCc-ccccCCC------CCCCCEEEccCCc-cC-------cCC--CCCCcCcEEECCCC-CCCcCCc-------cc
Confidence            8888753 4444422      3588888888762 22       111  35688999999988 6776653       56


Q ss_pred             CCccceeeccCCCccccCCCCCCCCCCCEEecccCc
Q 012933          347 ANLESLEISECSKLQKLVPPSWHLENLEALEVSKCH  382 (453)
Q Consensus       347 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~  382 (453)
                      ++|+.|++++| .++.+|..+.++++|+.|++++++
T Consensus       261 ~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          261 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             TTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             ccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence            78999999984 678888888889999999998744

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.63  E-value=1.8e-14  Score=143.24  Aligned_cols=179  Identities=15%  Similarity=0.172  Sum_probs=77.7

Q ss_pred             CCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccc
Q 012933          145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN  224 (453)
Q Consensus       145 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  224 (453)
                      ++++|++|+++++. +..++... +  ..+++|++|+++++. ++.. +...+..+++|+.|++++++.+..++..    
T Consensus       110 ~l~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~L~~N~-i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~----  179 (440)
T 3zyj_A          110 GLANLNTLELFDNR-LTTIPNGA-F--VYLSKLKELWLRNNP-IESI-PSYAFNRIPSLRRLDLGELKRLSYISEG----  179 (440)
T ss_dssp             TCSSCCEEECCSSC-CSSCCTTT-S--CSCSSCCEEECCSCC-CCEE-CTTTTTTCTTCCEEECCCCTTCCEECTT----
T ss_pred             CCccCCEEECCCCc-CCeeCHhH-h--hccccCceeeCCCCc-cccc-CHHHhhhCcccCEeCCCCCCCcceeCcc----
Confidence            34555555555543 33333221 1  235555666555542 3332 2233455555555555554444433210    


Q ss_pred             cccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccc
Q 012933          225 ADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLL  304 (453)
Q Consensus       225 ~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  304 (453)
                          ....+ ++|++|++.++ .++.+    ..+..+++|+.|+++++ .+..++...  +..+++|+.|+++++..-.+
T Consensus       180 ----~~~~l-~~L~~L~L~~n-~l~~~----~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~  246 (440)
T 3zyj_A          180 ----AFEGL-SNLRYLNLAMC-NLREI----PNLTPLIKLDELDLSGN-HLSAIRPGS--FQGLMHLQKLWMIQSQIQVI  246 (440)
T ss_dssp             ----TTTTC-SSCCEEECTTS-CCSSC----CCCTTCSSCCEEECTTS-CCCEECTTT--TTTCTTCCEEECTTCCCCEE
T ss_pred             ----hhhcc-cccCeecCCCC-cCccc----cccCCCcccCEEECCCC-ccCccChhh--hccCccCCEEECCCCceeEE
Confidence                00112 45555555544 23332    12444555555555554 233333222  34444444444444311110


Q ss_pred             cccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeecc
Q 012933          305 AHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISE  356 (453)
Q Consensus       305 ~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~  356 (453)
                            ....+..+++|++|+++++ .++.++.+.+   ..+++|+.|++++
T Consensus       247 ------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~  288 (440)
T 3zyj_A          247 ------ERNAFDNLQSLVEINLAHN-NLTLLPHDLF---TPLHHLERIHLHH  288 (440)
T ss_dssp             ------CTTSSTTCTTCCEEECTTS-CCCCCCTTTT---SSCTTCCEEECCS
T ss_pred             ------ChhhhcCCCCCCEEECCCC-CCCccChhHh---ccccCCCEEEcCC
Confidence                  0011234455555555555 4555554444   4555555555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.62  E-value=1.5e-14  Score=144.34  Aligned_cols=223  Identities=15%  Similarity=0.128  Sum_probs=115.7

Q ss_pred             CCcceEeecCCCCcccc-ccCccCCCCcceEEeccccccccccccCCccchhHHHH-HHhhcCCCCccEEEEeeCCCCcc
Q 012933           85 PSLERVSMTHCPNMKTF-SHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEEMIGFRDMEYLQLSYFPHLKE  162 (453)
Q Consensus        85 ~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~  162 (453)
                      +++++|+++++. ++.+ +..+..+++|++|+++++.               +..+ +..+.++++|++|+++++. +..
T Consensus        75 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~---------------i~~~~~~~~~~l~~L~~L~L~~n~-l~~  137 (452)
T 3zyi_A           75 SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNS---------------IRQIEVGAFNGLASLNTLELFDNW-LTV  137 (452)
T ss_dssp             TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC---------------CCEECTTTTTTCTTCCEEECCSSC-CSB
T ss_pred             CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCc---------------cCCcChhhccCcccCCEEECCCCc-CCc
Confidence            456666666653 4433 3445556666666666431               1111 1233456677777777665 444


Q ss_pred             cccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeee
Q 012933          163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL  242 (453)
Q Consensus       163 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L  242 (453)
                      ++... +  ..+++|++|+++++. ++.+ +...+..+++|+.|++++++.+..++..        ....+ ++|++|++
T Consensus       138 ~~~~~-~--~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~--------~~~~l-~~L~~L~L  203 (452)
T 3zyi_A          138 IPSGA-F--EYLSKLRELWLRNNP-IESI-PSYAFNRVPSLMRLDLGELKKLEYISEG--------AFEGL-FNLKYLNL  203 (452)
T ss_dssp             CCTTT-S--SSCTTCCEEECCSCC-CCEE-CTTTTTTCTTCCEEECCCCTTCCEECTT--------TTTTC-TTCCEEEC
T ss_pred             cChhh-h--cccCCCCEEECCCCC-ccee-CHhHHhcCCcccEEeCCCCCCccccChh--------hccCC-CCCCEEEC
Confidence            44332 2  346778888877753 4444 3344667777777777776666554320        01112 66777777


Q ss_pred             ccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcC
Q 012933          243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLR  322 (453)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~  322 (453)
                      .++. ++.+    ..+..+++|+.|+++++. +..++...  +..+++|+.|+++++..-.+      ....+..+++|+
T Consensus       204 ~~n~-l~~~----~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~  269 (452)
T 3zyi_A          204 GMCN-IKDM----PNLTPLVGLEELEMSGNH-FPEIRPGS--FHGLSSLKKLWVMNSQVSLI------ERNAFDGLASLV  269 (452)
T ss_dssp             TTSC-CSSC----CCCTTCTTCCEEECTTSC-CSEECGGG--GTTCTTCCEEECTTSCCCEE------CTTTTTTCTTCC
T ss_pred             CCCc-cccc----ccccccccccEEECcCCc-CcccCccc--ccCccCCCEEEeCCCcCceE------CHHHhcCCCCCC
Confidence            6653 3333    235566677777776643 33332222  44444555555544321110      001123455666


Q ss_pred             EEeecCCCCcceecccCCcccccCCCccceeecc
Q 012933          323 WLELSGLHKVQHLWKENDESNKAFANLESLEISE  356 (453)
Q Consensus       323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~  356 (453)
                      +|+++++ .++.++.+.+   ..+++|+.|++++
T Consensus       270 ~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~  299 (452)
T 3zyi_A          270 ELNLAHN-NLSSLPHDLF---TPLRYLVELHLHH  299 (452)
T ss_dssp             EEECCSS-CCSCCCTTSS---TTCTTCCEEECCS
T ss_pred             EEECCCC-cCCccChHHh---ccccCCCEEEccC
Confidence            6666655 4555555544   4556666666655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.62  E-value=5.1e-18  Score=169.89  Aligned_cols=377  Identities=16%  Similarity=0.068  Sum_probs=226.6

Q ss_pred             ccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccc---cccccccCCCcceEeecCCCCccc-c
Q 012933           26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFC---LENYTLEFPSLERVSMTHCPNMKT-F  101 (453)
Q Consensus        26 ~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~-~  101 (453)
                      +++|++|+++++ .+...+...      ....+++|++|++++|. ++...   .......+++|++|+++++. +.. .
T Consensus         2 ~~~l~~L~Ls~~-~l~~~~~~~------~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~   72 (461)
T 1z7x_W            2 SLDIQSLDIQCE-ELSDARWAE------LLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVG   72 (461)
T ss_dssp             CEEEEEEEEESC-CCCHHHHHH------HHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHH
T ss_pred             Cccceehhhhhc-ccCchhHHH------HHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHH
Confidence            568999999987 455443210      12238999999999965 44321   11224567999999999975 543 1


Q ss_pred             ccCcc-CCC----CcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCC---cCc
Q 012933          102 SHGIL-STP----KLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALP---VSF  173 (453)
Q Consensus       102 ~~~~~-~~~----~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~---~~~  173 (453)
                      +..+. .++    +|++|++++|.-      .    ......++..+..+++|++|+++++. +....... +.   ...
T Consensus        73 ~~~l~~~l~~~~~~L~~L~L~~n~i------~----~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~-l~~~l~~~  140 (461)
T 1z7x_W           73 VHCVLQGLQTPSCKIQKLSLQNCCL------T----GAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQL-LCEGLLDP  140 (461)
T ss_dssp             HHHHHHTTCSTTCCCCEEECTTSCC------B----GGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHH-HHHHHTST
T ss_pred             HHHHHHHHhhCCCceeEEEccCCCC------C----HHHHHHHHHHHccCCceeEEECCCCc-CchHHHHH-HHHHHhcC
Confidence            11111 233    799999997631      0    12234667788889999999999987 44211110 10   022


Q ss_pred             cCCCcEEEecCCCCccccCc---hhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcce
Q 012933          174 FNNLARLVVDDCTNMSSAIP---ANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKR  250 (453)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~---~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~  250 (453)
                      .++|++|++++|. ++....   ...+..+++|++|+++++. +.+.....-...    .....++|++|++.++. ++.
T Consensus       141 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~----l~~~~~~L~~L~L~~n~-l~~  213 (461)
T 1z7x_W          141 QCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQG----LKDSPCQLEALKLESCG-VTS  213 (461)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHH----HHHSCCCCCEEECTTSC-CBT
T ss_pred             CCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHH----HhcCCCCceEEEccCCC-CcH
Confidence            5689999999984 443211   2346678999999999975 443221100000    00012689999999884 332


Q ss_pred             ec--cCCCcccCCCCccEEeeecCCCCceeccC---CcccccCCCcccccccccccccccccccccccccccCCCcCEEe
Q 012933          251 FC--NFTGNIIELPELQHLTIQNCPDMETFISN---SVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLE  325 (453)
Q Consensus       251 ~~--~~~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~  325 (453)
                      ..  ..+..+..+++|++|++++|. +++....   ......+++|+.|++++|.--..  +.......+..+++|++|+
T Consensus       214 ~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~~~~L~~L~  290 (461)
T 1z7x_W          214 DNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAK--GCGDLCRVLRAKESLKELS  290 (461)
T ss_dssp             THHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH--HHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHH--HHHHHHHHHhhCCCcceEE
Confidence            10  012346678999999999974 4432211   01123467999999999832210  0000011234579999999


Q ss_pred             ecCCCCcceecccCCcc--cccCCCccceeeccCCCccc-----cCCCCCCCCCCCEEecccCcccccccCCCccc----
Q 012933          326 LSGLHKVQHLWKENDES--NKAFANLESLEISECSKLQK-----LVPPSWHLENLEALEVSKCHGLINLLTFSTSE----  394 (453)
Q Consensus       326 l~~~~~l~~l~~~~~~~--~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~----  394 (453)
                      ++++ .+++.....+..  ....++|++|++++|. ++.     ++..+..+++|++|+++++ .+.+.....+..    
T Consensus       291 Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~  367 (461)
T 1z7x_W          291 LAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQ  367 (461)
T ss_dssp             CTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTS
T ss_pred             CCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcC
Confidence            9998 555432222110  0244799999999975 443     3445567899999999885 676643221222    


Q ss_pred             ccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933          395 SLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE  440 (453)
Q Consensus       395 ~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~  440 (453)
                      ..++|++|++++|. +.....   ...+..+..++.|++|++++++
T Consensus       368 ~~~~L~~L~L~~n~-i~~~~~---~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          368 PGSVLRVLWLADCD-VSDSSC---SSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             TTCCCCEEECTTSC-CCHHHH---HHHHHHHHHCCCCCEEECCSSS
T ss_pred             CCCceEEEECCCCC-CChhhH---HHHHHHHHhCCCccEEECCCCC
Confidence            25799999999996 321100   0012233456788888888774

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.61  E-value=1.4e-14  Score=136.79  Aligned_cols=60  Identities=20%  Similarity=0.157  Sum_probs=31.1

Q ss_pred             cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCC-CCCEEeccc
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLE-NLEALEVSK  380 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~l~~  380 (453)
                      .+++|++|+++++ .++.++...+   ..+++|+.|+++++.-....+..+..++ +|++|++++
T Consensus       197 ~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~  257 (306)
T 2z66_A          197 SLSSLQVLNMSHN-NFFSLDTFPY---KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  257 (306)
T ss_dssp             TCTTCCEEECTTS-CCSBCCSGGG---TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred             CCCCCCEEECCCC-ccCccChhhc---cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence            3455666666655 4444444333   4566666666666432222333444453 666666655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.60  E-value=3.8e-15  Score=141.51  Aligned_cols=194  Identities=18%  Similarity=0.150  Sum_probs=87.6

Q ss_pred             hhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccc
Q 012933          142 EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLE  221 (453)
Q Consensus       142 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~  221 (453)
                      .+..+++|++|+++++. +.....     ...+++|++|+++++. ++..      ...++|+.|+++++ .+..++.  
T Consensus        53 ~~~~l~~L~~L~Ls~n~-l~~~~~-----~~~l~~L~~L~Ls~n~-l~~l------~~~~~L~~L~l~~n-~l~~~~~--  116 (317)
T 3o53_A           53 DLAPFTKLELLNLSSNV-LYETLD-----LESLSTLRTLDLNNNY-VQEL------LVGPSIETLHAANN-NISRVSC--  116 (317)
T ss_dssp             HHTTCTTCCEEECTTSC-CEEEEE-----ETTCTTCCEEECCSSE-EEEE------EECTTCCEEECCSS-CCSEEEE--
T ss_pred             HhhCCCcCCEEECCCCc-CCcchh-----hhhcCCCCEEECcCCc-cccc------cCCCCcCEEECCCC-ccCCcCc--
Confidence            34445566666665554 222111     1335566666666542 3222      12355566665553 2222211  


Q ss_pred             ccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccc
Q 012933          222 EQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEEN  301 (453)
Q Consensus       222 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~  301 (453)
                                ..+++|++|++.++. ++.+  .+..+..+++|+.|+++++. +...+... +...+++|+.|+++++.-
T Consensus       117 ----------~~~~~L~~L~l~~N~-l~~~--~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          117 ----------SRGQGKKNIYLANNK-ITML--RDLDEGCRSRVQYLDLKLNE-IDTVNFAE-LAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             ----------CCCSSCEEEECCSSC-CCSG--GGBCTGGGSSEEEEECTTSC-CCEEEGGG-GGGGTTTCCEEECTTSCC
T ss_pred             ----------cccCCCCEEECCCCC-CCCc--cchhhhccCCCCEEECCCCC-CCcccHHH-HhhccCcCCEEECCCCcC
Confidence                      012556666655542 2222  11234455566666665543 22222211 122344555555555421


Q ss_pred             ccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933          302 FLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK  380 (453)
Q Consensus       302 ~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  380 (453)
                      -.        ++....+++|++|++++| .++.++.. +   ..+++|+.|++++ +.++.+|..+..+++|++|++++
T Consensus       182 ~~--------~~~~~~l~~L~~L~Ls~N-~l~~l~~~-~---~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~  246 (317)
T 3o53_A          182 YD--------VKGQVVFAKLKTLDLSSN-KLAFMGPE-F---QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRG  246 (317)
T ss_dssp             CE--------EECCCCCTTCCEEECCSS-CCCEECGG-G---GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTT
T ss_pred             cc--------cccccccccCCEEECCCC-cCCcchhh-h---cccCcccEEECcC-CcccchhhHhhcCCCCCEEEccC
Confidence            11        011223455555555555 45554443 2   4555555555555 24555555555555555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.59  E-value=3.1e-14  Score=132.95  Aligned_cols=205  Identities=18%  Similarity=0.146  Sum_probs=130.4

Q ss_pred             cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (453)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~  253 (453)
                      .++|++|+++++. ++.. +...+..+++|++|+++++ .++.+..    .    ....+ ++|++|++.++..++.+  
T Consensus        31 ~~~l~~L~l~~n~-i~~~-~~~~~~~~~~L~~L~l~~n-~l~~~~~----~----~~~~l-~~L~~L~l~~n~~l~~~--   96 (285)
T 1ozn_A           31 PAASQRIFLHGNR-ISHV-PAASFRACRNLTILWLHSN-VLARIDA----A----AFTGL-ALLEQLDLSDNAQLRSV--   96 (285)
T ss_dssp             CTTCSEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSS-CCCEECT----T----TTTTC-TTCCEEECCSCTTCCCC--
T ss_pred             CCCceEEEeeCCc-CCcc-CHHHcccCCCCCEEECCCC-ccceeCH----h----hcCCc-cCCCEEeCCCCCCcccc--
Confidence            4677777777653 4443 3334666777777777664 3333211    0    11112 67777777766555543  


Q ss_pred             CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc
Q 012933          254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ  333 (453)
Q Consensus       254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~  333 (453)
                      .+..+..+++|+.|+++++. +..++...  +..+++|+.|+++++.--.+.      ...+..+++|++|+++++ .++
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n-~l~  166 (285)
T 1ozn_A           97 DPATFHGLGRLHTLHLDRCG-LQELGPGL--FRGLAALQYLYLQDNALQALP------DDTFRDLGNLTHLFLHGN-RIS  166 (285)
T ss_dssp             CTTTTTTCTTCCEEECTTSC-CCCCCTTT--TTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSS-CCC
T ss_pred             CHHHhcCCcCCCEEECCCCc-CCEECHhH--hhCCcCCCEEECCCCcccccC------HhHhccCCCccEEECCCC-ccc
Confidence            23456667777777777754 33333322  566677777777765321110      112456788999999888 688


Q ss_pred             eecccCCcccccCCCccceeeccCCCcccc-CCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933          334 HLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                      .++...+   ..+++|++|+++++ .++.+ |..+..+++|++|++++ ++++.++.. ....+++|++|++++++
T Consensus       167 ~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          167 SVPERAF---RGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTE-ALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             EECTTTT---TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCHH-HHTTCTTCCEEECCSSC
T ss_pred             ccCHHHh---cCccccCEEECCCC-cccccCHhHccCcccccEeeCCC-CcCCcCCHH-HcccCcccCEEeccCCC
Confidence            8877666   78889999999985 45555 56778889999999987 467776542 34567889999988655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.58  E-value=1.7e-15  Score=143.84  Aligned_cols=245  Identities=14%  Similarity=0.092  Sum_probs=135.5

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ  137 (453)
Q Consensus        58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  137 (453)
                      +++|++|+++++ +++.++.. ....+++|++|++++|. ++..+. +..+++|++|+++++.               +.
T Consensus        33 ~~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~---------------l~   93 (317)
T 3o53_A           33 AWNVKELDLSGN-PLSQISAA-DLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY---------------VQ   93 (317)
T ss_dssp             GGGCSEEECTTS-CCCCCCHH-HHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE---------------EE
T ss_pred             CCCCCEEECcCC-ccCcCCHH-HhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc---------------cc
Confidence            667777777773 45544322 14567778888887764 443332 5667777777777542               11


Q ss_pred             HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933          138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV  217 (453)
Q Consensus       138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~  217 (453)
                      .    +...++|++|+++++. +..++..      .+++|++|+++++. ++...+ ..+..+++|+.|+++++ .+..+
T Consensus        94 ~----l~~~~~L~~L~l~~n~-l~~~~~~------~~~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~  159 (317)
T 3o53_A           94 E----LLVGPSIETLHAANNN-ISRVSCS------RGQGKKNIYLANNK-ITMLRD-LDEGCRSRVQYLDLKLN-EIDTV  159 (317)
T ss_dssp             E----EEECTTCCEEECCSSC-CSEEEEC------CCSSCEEEECCSSC-CCSGGG-BCTGGGSSEEEEECTTS-CCCEE
T ss_pred             c----ccCCCCcCEEECCCCc-cCCcCcc------ccCCCCEEECCCCC-CCCccc-hhhhccCCCCEEECCCC-CCCcc
Confidence            1    1123667777777665 4443332      25677777777753 443322 23556677777777664 23322


Q ss_pred             hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccc
Q 012933          218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLT  297 (453)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~  297 (453)
                      ....       ... .+++|++|++.++. ++.++    ....+++|+.|+++++. ++.++.                 
T Consensus       160 ~~~~-------~~~-~l~~L~~L~L~~N~-l~~~~----~~~~l~~L~~L~Ls~N~-l~~l~~-----------------  208 (317)
T 3o53_A          160 NFAE-------LAA-SSDTLEHLNLQYNF-IYDVK----GQVVFAKLKTLDLSSNK-LAFMGP-----------------  208 (317)
T ss_dssp             EGGG-------GGG-GTTTCCEEECTTSC-CCEEE----CCCCCTTCCEEECCSSC-CCEECG-----------------
T ss_pred             cHHH-------Hhh-ccCcCCEEECCCCc-Ccccc----cccccccCCEEECCCCc-CCcchh-----------------
Confidence            1100       000 11556666665543 33331    12235566666665542 222221                 


Q ss_pred             ccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCc-cccCCCCCCCCCCCEE
Q 012933          298 SEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKL-QKLVPPSWHLENLEAL  376 (453)
Q Consensus       298 ~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L  376 (453)
                                      ++..+++|++|++++| .++.++.. +   ..+++|+.|++++++-. ..++..+..+++|+.+
T Consensus       209 ----------------~~~~l~~L~~L~L~~N-~l~~l~~~-~---~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l  267 (317)
T 3o53_A          209 ----------------EFQSAAGVTWISLRNN-KLVLIEKA-L---RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (317)
T ss_dssp             ----------------GGGGGTTCSEEECTTS-CCCEECTT-C---CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred             ----------------hhcccCcccEEECcCC-cccchhhH-h---hcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence                            2234567777777777 56666544 2   56777788877774432 2455556667777777


Q ss_pred             ecccCcccccc
Q 012933          377 EVSKCHGLINL  387 (453)
Q Consensus       377 ~l~~c~~l~~l  387 (453)
                      ++.+++.++..
T Consensus       268 ~l~~~~~l~~~  278 (317)
T 3o53_A          268 AKQTVKKLTGQ  278 (317)
T ss_dssp             HHHHHHHHHSS
T ss_pred             ECCCchhccCC
Confidence            77766666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.55  E-value=8.7e-14  Score=126.41  Aligned_cols=83  Identities=12%  Similarity=0.058  Sum_probs=49.1

Q ss_pred             cCCCcC-EEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC-CCCCC-CCCCEEecccCcccccccCCCcc
Q 012933          317 SFPRLR-WLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHL-ENLEALEVSKCHGLINLLTFSTS  393 (453)
Q Consensus       317 ~l~~L~-~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~~  393 (453)
                      .+++|+ +|+++++ .++.++...|   .. ++|+.|+++++..++.++. .+..+ ++|++|++++ +.++.++..   
T Consensus       153 ~l~~L~~~L~l~~n-~l~~i~~~~~---~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~---  223 (239)
T 2xwt_C          153 GLCNETLTLKLYNN-GFTSVQGYAF---NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK---  223 (239)
T ss_dssp             TTBSSEEEEECCSC-CCCEECTTTT---TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT---
T ss_pred             chhcceeEEEcCCC-CCcccCHhhc---CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh---
Confidence            345666 6666665 4556665554   33 6677777777544666654 34556 6777777766 556665542   


Q ss_pred             cccCCcceEEEcccch
Q 012933          394 ESLVNLGRMMIADCKM  409 (453)
Q Consensus       394 ~~l~~L~~L~i~~C~~  409 (453)
                       .+++|++|++.++..
T Consensus       224 -~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          224 -GLEHLKELIARNTWT  238 (239)
T ss_dssp             -TCTTCSEEECTTC--
T ss_pred             -HhccCceeeccCccC
Confidence             456677777766654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.55  E-value=5.8e-15  Score=141.29  Aligned_cols=210  Identities=15%  Similarity=0.163  Sum_probs=100.3

Q ss_pred             CCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCc-cc
Q 012933           85 PSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLK-EI  163 (453)
Q Consensus        85 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~  163 (453)
                      ++++.+++.++ .+...+..+..+++|++|++++|.             .....++..+..+++|++|+++++. +. ..
T Consensus        70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~-------------l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~  134 (336)
T 2ast_B           70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSV-------------IEVSTLHGILSQCSKLQNLSLEGLR-LSDPI  134 (336)
T ss_dssp             TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCE-------------ECHHHHHHHHTTBCCCSEEECTTCB-CCHHH
T ss_pred             ccceEEEcCCc-cccccchhhccCCCCCEEEccCCC-------------cCHHHHHHHHhhCCCCCEEeCcCcc-cCHHH
Confidence            55555555554 233333334455666666666431             1112244445556666666666664 22 11


Q ss_pred             ccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCC-ccceeee
Q 012933          164 WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFP-KLYGLRL  242 (453)
Q Consensus       164 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~L  242 (453)
                      +..  +  ..+++|++|++++|..+++......+..+++|++|++++|..+++.....       ... .++ +|++|++
T Consensus       135 ~~~--l--~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~~-~l~~~L~~L~l  202 (336)
T 2ast_B          135 VNT--L--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-------AVA-HVSETITQLNL  202 (336)
T ss_dssp             HHH--H--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-------HHH-HSCTTCCEEEC
T ss_pred             HHH--H--hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-------HHH-hcccCCCEEEe
Confidence            111  1  23667777777776555432122335667777777777764444321000       000 125 6777777


Q ss_pred             ccCC-CcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCc
Q 012933          243 IDLP-KLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRL  321 (453)
Q Consensus       243 ~~~~-~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L  321 (453)
                      .++. .+++. ..+..+..+++|+.|++++|..+++.....  +..+++|+.|++++|..+.  +   ..+..+..+++|
T Consensus       203 ~~~~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~--l~~l~~L~~L~l~~~~~~~--~---~~~~~l~~~~~L  274 (336)
T 2ast_B          203 SGYRKNLQKS-DLSTLVRRCPNLVHLDLSDSVMLKNDCFQE--FFQLNYLQHLSLSRCYDII--P---ETLLELGEIPTL  274 (336)
T ss_dssp             CSCGGGSCHH-HHHHHHHHCTTCSEEECTTCTTCCGGGGGG--GGGCTTCCEEECTTCTTCC--G---GGGGGGGGCTTC
T ss_pred             CCCcccCCHH-HHHHHHhhCCCCCEEeCCCCCcCCHHHHHH--HhCCCCCCEeeCCCCCCCC--H---HHHHHHhcCCCC
Confidence            7664 33320 112344566777777777766444322221  3344444555444443111  0   001122345566


Q ss_pred             CEEeecCC
Q 012933          322 RWLELSGL  329 (453)
Q Consensus       322 ~~L~l~~~  329 (453)
                      ++|++++|
T Consensus       275 ~~L~l~~~  282 (336)
T 2ast_B          275 KTLQVFGI  282 (336)
T ss_dssp             CEEECTTS
T ss_pred             CEEeccCc
Confidence            66666655

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.54  E-value=2e-13  Score=128.76  Aligned_cols=207  Identities=15%  Similarity=0.117  Sum_probs=130.2

Q ss_pred             ccCCCcEEEecCCCCccccC-chhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCccee
Q 012933          173 FFNNLARLVVDDCTNMSSAI-PANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF  251 (453)
Q Consensus       173 ~l~~L~~L~l~~c~~l~~~~-~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~  251 (453)
                      .+++|++|+++++. ++... ....+..+++|++|+++++. +..++.         ... .+++|++|++.++. ++.+
T Consensus        50 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~---------~~~-~l~~L~~L~l~~n~-l~~~  116 (306)
T 2z66_A           50 KLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSS---------NFL-GLEQLEHLDFQHSN-LKQM  116 (306)
T ss_dssp             TCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEE---------EEE-TCTTCCEEECTTSE-EESS
T ss_pred             ccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChh---------hcC-CCCCCCEEECCCCc-cccc
Confidence            35667777776653 22110 01224456777777776652 333221         011 12677777776643 3322


Q ss_pred             ccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCC
Q 012933          252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK  331 (453)
Q Consensus       252 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~  331 (453)
                      + ....+..+++|+.|+++++. +.......  +..+++|+.|+++++....   .  .....+..+++|++|++++| .
T Consensus       117 ~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~l~~n~l~~---~--~~~~~~~~l~~L~~L~Ls~n-~  186 (306)
T 2z66_A          117 S-EFSVFLSLRNLIYLDISHTH-TRVAFNGI--FNGLSSLEVLKMAGNSFQE---N--FLPDIFTELRNLTFLDLSQC-Q  186 (306)
T ss_dssp             T-TTTTTTTCTTCCEEECTTSC-CEECSTTT--TTTCTTCCEEECTTCEEGG---G--EECSCCTTCTTCCEEECTTS-C
T ss_pred             c-cchhhhhccCCCEEECCCCc-CCccchhh--cccCcCCCEEECCCCcccc---c--cchhHHhhCcCCCEEECCCC-C
Confidence            1 11356677788888887764 33333322  5667788888887763211   0  01123457899999999999 7


Q ss_pred             cceecccCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEecccCcccccccCCCccccc-CCcceEEEcccc
Q 012933          332 VQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESL-VNLGRMMIADCK  408 (453)
Q Consensus       332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l-~~L~~L~i~~C~  408 (453)
                      ++.++...+   ..+++|++|++++ +.++.++. .+..+++|++|+++++ .++..... ....+ ++|++|++++++
T Consensus       187 l~~~~~~~~---~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          187 LEQLSPTAF---NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQ-ELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CCEECTTTT---TTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSS-SCCCCCTTCCEEECTTCC
T ss_pred             cCCcCHHHh---cCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCC-CCcccCHH-HHHhhhccCCEEEccCCC
Confidence            888876666   7899999999999 45777765 5678999999999885 66665443 33455 499999998765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.53  E-value=3.5e-14  Score=132.61  Aligned_cols=15  Identities=27%  Similarity=0.423  Sum_probs=7.9

Q ss_pred             ccCCCCccEEeeecC
Q 012933          258 IIELPELQHLTIQNC  272 (453)
Q Consensus       258 ~~~l~~L~~L~l~~c  272 (453)
                      +..+++|+.|+++++
T Consensus       149 ~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGN  163 (285)
T ss_dssp             TTTCTTCCEEECCSS
T ss_pred             hccCCCccEEECCCC
Confidence            444555555555553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.52  E-value=1e-14  Score=138.24  Aligned_cols=84  Identities=15%  Similarity=0.113  Sum_probs=50.0

Q ss_pred             cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccc-------cCCCcceEeecCC
Q 012933           23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL-------EFPSLERVSMTHC   95 (453)
Q Consensus        23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-------~l~~L~~L~l~~c   95 (453)
                      ++..++|+.|+++++. + .+|..+..          .|+.|++++ ..++.........       .+++|++|++++|
T Consensus        39 ~~~~~~L~~l~l~~n~-l-~~p~~~~~----------~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n  105 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDT-E-ADLGQFTD----------IIKSLSLKR-LTVRAARIPSRILFGALRVLGISGLQELTLENL  105 (312)
T ss_dssp             EEEEEECTTHHHHCCT-T-CCCHHHHH----------HHHHCCCCE-EEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE
T ss_pred             EccCCCceeEeecccc-c-ccHHHHHH----------HHhhccccc-ccccCCCcCHHHHHHHHHhcCcCCccEEEccCC
Confidence            3456677778887763 4 66654433          377777777 3343322221122       4788888888887


Q ss_pred             CCccccccCc--cCCCCcceEEeccc
Q 012933           96 PNMKTFSHGI--LSTPKLHKVQVTEK  119 (453)
Q Consensus        96 ~~l~~~~~~~--~~~~~L~~L~l~~~  119 (453)
                      .--..+|..+  ..+++|++|+++++
T Consensus       106 ~l~~~~~~~~~~~~l~~L~~L~Ls~N  131 (312)
T 1wwl_A          106 EVTGTAPPPLLEATGPDLNILNLRNV  131 (312)
T ss_dssp             BCBSCCCCCSSSCCSCCCSEEEEESC
T ss_pred             cccchhHHHHHHhcCCCccEEEccCC
Confidence            5333566554  55677777777653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.51  E-value=2.7e-13  Score=130.49  Aligned_cols=241  Identities=18%  Similarity=0.185  Sum_probs=126.0

Q ss_pred             eEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHH-hhcCCCCccEEEEeeCCCCcccccCC
Q 012933           89 RVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE-EMIGFRDMEYLQLSYFPHLKEIWHGQ  167 (453)
Q Consensus        89 ~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~  167 (453)
                      .++.++ .+++.+|..+  .+++++|+++++               .+..++. +..++++|++|+++++.-...++.+.
T Consensus        13 ~v~C~~-~~Lt~iP~~l--~~~l~~L~Ls~N---------------~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~   74 (350)
T 4ay9_X           13 VFLCQE-SKVTEIPSDL--PRNAIELRFVLT---------------KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV   74 (350)
T ss_dssp             EEEEES-TTCCSCCTTC--CTTCSEEEEESC---------------CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred             EEEecC-CCCCccCcCc--CCCCCEEEccCC---------------cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence            455544 3577777644  356777777632               2233332 23455666666666665333333322


Q ss_pred             CCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCC
Q 012933          168 ALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPK  247 (453)
Q Consensus       168 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  247 (453)
                       +  ..++++.++.+.++.+++.+. .+.+..+++|++|+++++ .+..++...        .... .++..+.+.++..
T Consensus        75 -f--~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L~~L~l~~n-~l~~~~~~~--------~~~~-~~l~~l~l~~~~~  140 (350)
T 4ay9_X           75 -F--SNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNT-GIKHLPDVH--------KIHS-LQKVLLDIQDNIN  140 (350)
T ss_dssp             -B--CSCTTCCEEEEEEETTCCEEC-TTSBCCCTTCCEEEEEEE-CCSSCCCCT--------TCCB-SSCEEEEEESCTT
T ss_pred             -h--hcchhhhhhhcccCCcccccC-chhhhhcccccccccccc-ccccCCchh--------hccc-chhhhhhhccccc
Confidence             2  234555555555555555442 233556666666666553 233222110        0001 3344555555444


Q ss_pred             cceeccCCCcccCC-CCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEee
Q 012933          248 LKRFCNFTGNIIEL-PELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLEL  326 (453)
Q Consensus       248 l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l  326 (453)
                      ++.++  ...+..+ ..++.|+++++ .++.++..                                 ....++|+.+.+
T Consensus       141 i~~l~--~~~f~~~~~~l~~L~L~~N-~i~~i~~~---------------------------------~f~~~~L~~l~l  184 (350)
T 4ay9_X          141 IHTIE--RNSFVGLSFESVILWLNKN-GIQEIHNS---------------------------------AFNGTQLDELNL  184 (350)
T ss_dssp             CCEEC--TTSSTTSBSSCEEEECCSS-CCCEECTT---------------------------------SSTTEEEEEEEC
T ss_pred             ccccc--ccchhhcchhhhhhccccc-cccCCChh---------------------------------hccccchhHHhh
Confidence            44442  1222222 23444555442 23333222                                 223356777777


Q ss_pred             cCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcc
Q 012933          327 SGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIAD  406 (453)
Q Consensus       327 ~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~  406 (453)
                      .++..++.++.+.|   ..+++|+.|++++ +.++.+|.+.  +.+|++|.+.++++++.+|.   ...+++|+.+++.+
T Consensus       185 ~~~n~l~~i~~~~f---~~l~~L~~LdLs~-N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          185 SDNNNLEELPNDVF---HGASGPVILDISR-TRIHSLPSYG--LENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY  255 (350)
T ss_dssp             TTCTTCCCCCTTTT---TTEECCSEEECTT-SCCCCCCSSS--CTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred             ccCCcccCCCHHHh---ccCcccchhhcCC-CCcCccChhh--hccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence            66666777776666   6777777777777 4677776542  56667777666777777664   34567777777653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.51  E-value=1.4e-13  Score=138.51  Aligned_cols=194  Identities=17%  Similarity=0.143  Sum_probs=89.1

Q ss_pred             hhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccc
Q 012933          142 EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLE  221 (453)
Q Consensus       142 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~  221 (453)
                      .+..+++|++|+++++. +.....     ...+++|++|+++++. +++..      ..++|+.|+++++ .+..++.  
T Consensus        53 ~~~~l~~L~~L~Ls~N~-l~~~~~-----l~~l~~L~~L~Ls~N~-l~~l~------~~~~L~~L~L~~N-~l~~~~~--  116 (487)
T 3oja_A           53 DLAPFTKLELLNLSSNV-LYETLD-----LESLSTLRTLDLNNNY-VQELL------VGPSIETLHAANN-NISRVSC--  116 (487)
T ss_dssp             GGTTCTTCCEEECTTSC-CEEEEE-----CTTCTTCCEEECCSSE-EEEEE------ECTTCCEEECCSS-CCCCEEE--
T ss_pred             HHhCCCCCCEEEeeCCC-CCCCcc-----cccCCCCCEEEecCCc-CCCCC------CCCCcCEEECcCC-cCCCCCc--
Confidence            33445556666655554 222111     1335556666665542 33221      1255555555554 2222211  


Q ss_pred             ccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccc
Q 012933          222 EQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEEN  301 (453)
Q Consensus       222 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~  301 (453)
                                ..+++|++|++.++. ++.+  .+..+..+++|+.|+++++.--...+..  +...+++|+.|+++++.-
T Consensus       117 ----------~~l~~L~~L~L~~N~-l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          117 ----------SRGQGKKNIYLANNK-ITML--RDLDEGCRSRVQYLDLKLNEIDTVNFAE--LAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ----------CCCSSCEEEECCSSC-CCSG--GGBCGGGGSSEEEEECTTSCCCEEEGGG--GGGGTTTCCEEECTTSCC
T ss_pred             ----------cccCCCCEEECCCCC-CCCC--CchhhcCCCCCCEEECCCCCCCCcChHH--HhhhCCcccEEecCCCcc
Confidence                      122556666665543 2221  1234455556666666554322222221  112445555665555421


Q ss_pred             ccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933          302 FLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK  380 (453)
Q Consensus       302 ~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  380 (453)
                      -.        ++....+++|++|++++| .++.++.. +   ..+++|+.|++++ +.++.+|..+..+++|+.|++++
T Consensus       182 ~~--------~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~---~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~  246 (487)
T 3oja_A          182 YD--------VKGQVVFAKLKTLDLSSN-KLAFMGPE-F---QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRG  246 (487)
T ss_dssp             CE--------EECCCCCTTCCEEECCSS-CCCEECGG-G---GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTT
T ss_pred             cc--------ccccccCCCCCEEECCCC-CCCCCCHh-H---cCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCC
Confidence            11        011223555666666555 45555443 2   4555566666655 34555555555555566666555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.51  E-value=2.3e-13  Score=123.60  Aligned_cols=204  Identities=12%  Similarity=0.113  Sum_probs=129.7

Q ss_pred             CCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccC
Q 012933          175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF  254 (453)
Q Consensus       175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~  254 (453)
                      +++++|+++++. ++.+ +...+..+++|+.|+++++..++.++...        .. .+++|++|++.+|..++.++  
T Consensus        31 ~~l~~L~l~~n~-l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~--------f~-~l~~L~~L~l~~~n~l~~i~--   97 (239)
T 2xwt_C           31 PSTQTLKLIETH-LRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHS--------FY-NLSKVTHIEIRNTRNLTYID--   97 (239)
T ss_dssp             TTCCEEEEESCC-CSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTT--------EE-SCTTCCEEEEEEETTCCEEC--
T ss_pred             CcccEEEEeCCc-ceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhH--------cC-CCcCCcEEECCCCCCeeEcC--
Confidence            467777777753 4444 33345666677777776654344432100        00 11555555555544455441  


Q ss_pred             CCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcC---EEeecCCCC
Q 012933          255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLR---WLELSGLHK  331 (453)
Q Consensus       255 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~---~L~l~~~~~  331 (453)
                      +..+..+++|+.|+++++. ++.+                                  +....+++|+   +|++++++.
T Consensus        98 ~~~f~~l~~L~~L~l~~n~-l~~l----------------------------------p~~~~l~~L~~L~~L~l~~N~~  142 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTG-LKMF----------------------------------PDLTKVYSTDIFFILEITDNPY  142 (239)
T ss_dssp             TTSEECCTTCCEEEEEEEC-CCSC----------------------------------CCCTTCCBCCSEEEEEEESCTT
T ss_pred             HHHhCCCCCCCEEeCCCCC-Cccc----------------------------------cccccccccccccEEECCCCcc
Confidence            2344455555555555532 1111                                  1123455666   999999878


Q ss_pred             cceecccCCcccccCCCcc-ceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCccccc-CCcceEEEcccch
Q 012933          332 VQHLWKENDESNKAFANLE-SLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESL-VNLGRMMIADCKM  409 (453)
Q Consensus       332 l~~l~~~~~~~~~~l~~L~-~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l-~~L~~L~i~~C~~  409 (453)
                      ++.++...|   ..+++|+ .|++++ +.++.+|......++|++|+++++..++.++.. .+..+ ++|++|+++++. 
T Consensus       143 l~~i~~~~~---~~l~~L~~~L~l~~-n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~-~~~~l~~~L~~L~l~~N~-  216 (239)
T 2xwt_C          143 MTSIPVNAF---QGLCNETLTLKLYN-NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD-AFGGVYSGPSLLDVSQTS-  216 (239)
T ss_dssp             CCEECTTTT---TTTBSSEEEEECCS-CCCCEECTTTTTTCEEEEEECTTCTTCCEECTT-TTTTCSBCCSEEECTTCC-
T ss_pred             hhhcCcccc---cchhcceeEEEcCC-CCCcccCHhhcCCCCCCEEEcCCCCCcccCCHH-HhhccccCCcEEECCCCc-
Confidence            999998877   8999999 999999 578899887655589999999987678888764 45677 999999998865 


Q ss_pred             hHHHHhhccCCccCCCceeccccchhhhhhHHH
Q 012933          410 IEQIIQLQVGEEAKDCNVFKELSCETMSKNEDL  442 (453)
Q Consensus       410 l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  442 (453)
                      ++.+        +..  .|+.|+.|++++...|
T Consensus       217 l~~l--------~~~--~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          217 VTAL--------PSK--GLEHLKELIARNTWTL  239 (239)
T ss_dssp             CCCC--------CCT--TCTTCSEEECTTC---
T ss_pred             cccC--------Chh--HhccCceeeccCccCC
Confidence            2211        111  6888999988877653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.51  E-value=2.4e-13  Score=136.70  Aligned_cols=239  Identities=14%  Similarity=0.091  Sum_probs=134.8

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ  137 (453)
Q Consensus        58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  137 (453)
                      +++|++|+++++ .++.++.. ....+++|++|++++|. ++..+. +..+++|++|+++++.               +.
T Consensus        33 ~~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~---------------l~   93 (487)
T 3oja_A           33 AWNVKELDLSGN-PLSQISAA-DLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY---------------VQ   93 (487)
T ss_dssp             GGGCCEEECCSS-CCCCCCGG-GGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE---------------EE
T ss_pred             CCCccEEEeeCC-cCCCCCHH-HHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc---------------CC
Confidence            456666666663 34444332 14456677777776654 443322 5556666666666431               11


Q ss_pred             HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933          138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV  217 (453)
Q Consensus       138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~  217 (453)
                      .+    ...++|++|+++++. +..++..      .+++|++|+++++. +++..+. .+..+++|+.|+++++ .+...
T Consensus        94 ~l----~~~~~L~~L~L~~N~-l~~~~~~------~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~  159 (487)
T 3oja_A           94 EL----LVGPSIETLHAANNN-ISRVSCS------RGQGKKNIYLANNK-ITMLRDL-DEGCRSRVQYLDLKLN-EIDTV  159 (487)
T ss_dssp             EE----EECTTCCEEECCSSC-CCCEEEC------CCSSCEEEECCSSC-CCSGGGB-CGGGGSSEEEEECTTS-CCCEE
T ss_pred             CC----CCCCCcCEEECcCCc-CCCCCcc------ccCCCCEEECCCCC-CCCCCch-hhcCCCCCCEEECCCC-CCCCc
Confidence            11    122566777776665 4333332      25677777777753 4444332 3566677777777664 23322


Q ss_pred             hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccc
Q 012933          218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLT  297 (453)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~  297 (453)
                      +...       ... .+++|++|+++++. ++.+    .....+++|+.|+++++. ++.++                  
T Consensus       160 ~~~~-------l~~-~l~~L~~L~Ls~N~-l~~~----~~~~~l~~L~~L~Ls~N~-l~~~~------------------  207 (487)
T 3oja_A          160 NFAE-------LAA-SSDTLEHLNLQYNF-IYDV----KGQVVFAKLKTLDLSSNK-LAFMG------------------  207 (487)
T ss_dssp             EGGG-------GGG-GTTTCCEEECTTSC-CCEE----ECCCCCTTCCEEECCSSC-CCEEC------------------
T ss_pred             ChHH-------Hhh-hCCcccEEecCCCc-cccc----cccccCCCCCEEECCCCC-CCCCC------------------
Confidence            1100       000 12556666665553 3333    112235566666665532 22221                  


Q ss_pred             ccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCc-cccCCCCCCCCCCCEE
Q 012933          298 SEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKL-QKLVPPSWHLENLEAL  376 (453)
Q Consensus       298 ~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L  376 (453)
                                     +.+..+++|+.|++++| .++.++...    ..+++|+.|++++++-. ..+|..+..++.|+.+
T Consensus       208 ---------------~~~~~l~~L~~L~Ls~N-~l~~lp~~l----~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l  267 (487)
T 3oja_A          208 ---------------PEFQSAAGVTWISLRNN-KLVLIEKAL----RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (487)
T ss_dssp             ---------------GGGGGGTTCSEEECTTS-CCCEECTTC----CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred             ---------------HhHcCCCCccEEEecCC-cCcccchhh----ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence                           22346789999999998 688887653    78899999999996533 2566667778888888


Q ss_pred             ecccC
Q 012933          377 EVSKC  381 (453)
Q Consensus       377 ~l~~c  381 (453)
                      .+..+
T Consensus       268 ~~~~~  272 (487)
T 3oja_A          268 AKQTV  272 (487)
T ss_dssp             HHHHH
T ss_pred             ecccc
Confidence            87533

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.49  E-value=2.2e-14  Score=137.24  Aligned_cols=253  Identities=12%  Similarity=0.098  Sum_probs=160.4

Q ss_pred             cccceEEeccccchhhhhcccccccccccccc--cccceeeccccccccccccccccccCCCcceEeecCCCCccc--cc
Q 012933           27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAF--SKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT--FS  102 (453)
Q Consensus        27 ~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~  102 (453)
                      ..+++++++++. +.  +..+..        +  ++++.|++.+. .+......  ...+++|++|++++|. +..  ++
T Consensus        47 ~~~~~l~l~~~~-~~--~~~~~~--------~~~~~l~~L~l~~n-~l~~~~~~--~~~~~~L~~L~L~~~~-l~~~~~~  111 (336)
T 2ast_B           47 SLWQTLDLTGKN-LH--PDVTGR--------LLSQGVIAFRCPRS-FMDQPLAE--HFSPFRVQHMDLSNSV-IEVSTLH  111 (336)
T ss_dssp             TTSSEEECTTCB-CC--HHHHHH--------HHHTTCSEEECTTC-EECSCCCS--CCCCBCCCEEECTTCE-ECHHHHH
T ss_pred             hhheeecccccc-CC--HHHHHh--------hhhccceEEEcCCc-cccccchh--hccCCCCCEEEccCCC-cCHHHHH
Confidence            347888888863 32  222222        4  68888888873 34444333  4467889999998875 542  66


Q ss_pred             cCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcc--cccCCCCCcCccCCCcEE
Q 012933          103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE--IWHGQALPVSFFNNLARL  180 (453)
Q Consensus       103 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~l~~~~l~~L~~L  180 (453)
                      ..+..+++|++|++++|.              .....+..+..+++|++|++++|..+.+  ++...    ..+++|++|
T Consensus       112 ~~~~~~~~L~~L~L~~~~--------------l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~----~~~~~L~~L  173 (336)
T 2ast_B          112 GILSQCSKLQNLSLEGLR--------------LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL----SSCSRLDEL  173 (336)
T ss_dssp             HHHTTBCCCSEEECTTCB--------------CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH----HHCTTCCEE
T ss_pred             HHHhhCCCCCEEeCcCcc--------------cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH----hcCCCCCEE
Confidence            666778889999988652              1123445566688999999988854543  22211    457889999


Q ss_pred             EecCCCCccccCchhHHhhcC-CCcEEEeccCc-cchh--hhcccccccccCCCCCCCCccceeeeccCCCcceeccCCC
Q 012933          181 VVDDCTNMSSAIPANLLRCLN-NLQWLEVRNCD-SIEE--VLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTG  256 (453)
Q Consensus       181 ~l~~c~~l~~~~~~~~l~~l~-~L~~L~l~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~  256 (453)
                      ++++|..+++......+..++ +|++|++++|. .+.+  ++.         ... .+++|++|++.+|..+++.  ...
T Consensus       174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~---------~~~-~~~~L~~L~l~~~~~l~~~--~~~  241 (336)
T 2ast_B          174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST---------LVR-RCPNLVHLDLSDSVMLKND--CFQ  241 (336)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH---------HHH-HCTTCSEEECTTCTTCCGG--GGG
T ss_pred             cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH---------HHh-hCCCCCEEeCCCCCcCCHH--HHH
Confidence            999886665432234577888 99999998885 3432  111         001 2388999999888765542  234


Q ss_pred             cccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccC-CCcCEEeecCCCCccee
Q 012933          257 NIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSF-PRLRWLELSGLHKVQHL  335 (453)
Q Consensus       257 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l-~~L~~L~l~~~~~l~~l  335 (453)
                      .+..+++|+.|++++|..+.......  +..+++|+.|++++|  +.  +      ..+..+ .+++.|+++++ .++..
T Consensus       242 ~l~~l~~L~~L~l~~~~~~~~~~~~~--l~~~~~L~~L~l~~~--i~--~------~~~~~l~~~l~~L~l~~n-~l~~~  308 (336)
T 2ast_B          242 EFFQLNYLQHLSLSRCYDIIPETLLE--LGEIPTLKTLQVFGI--VP--D------GTLQLLKEALPHLQINCS-HFTTI  308 (336)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGG--GGGCTTCCEEECTTS--SC--T------TCHHHHHHHSTTSEESCC-CSCCT
T ss_pred             HHhCCCCCCEeeCCCCCCCCHHHHHH--HhcCCCCCEEeccCc--cC--H------HHHHHHHhhCcceEEecc-cCccc
Confidence            67788999999999987554433222  667889999999887  22  1      011122 23566667666 56554


Q ss_pred             cc
Q 012933          336 WK  337 (453)
Q Consensus       336 ~~  337 (453)
                      ..
T Consensus       309 ~~  310 (336)
T 2ast_B          309 AR  310 (336)
T ss_dssp             TC
T ss_pred             cC
Confidence            43

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.46  E-value=1.7e-12  Score=120.54  Aligned_cols=209  Identities=16%  Similarity=0.199  Sum_probs=122.9

Q ss_pred             CCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccC
Q 012933          175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF  254 (453)
Q Consensus       175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~  254 (453)
                      ++|++|+++++. ++.. +...+..+++|++|+++++ .+..++..        ... .+++|++|++.++. ++.+  .
T Consensus        28 ~~l~~L~ls~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~--------~~~-~l~~L~~L~L~~n~-l~~~--~   92 (276)
T 2z62_A           28 FSTKNLDLSFNP-LRHL-GSYSFFSFPELQVLDLSRC-EIQTIEDG--------AYQ-SLSHLSTLILTGNP-IQSL--A   92 (276)
T ss_dssp             TTCCEEECTTCC-CCEE-CTTTTTTCTTCSEEECTTC-CCCEECTT--------TTT-TCTTCCEEECTTCC-CCEE--C
T ss_pred             CCccEEECCCCc-cccc-CHhHhccccCCcEEECCCC-cCCccCHH--------Hcc-CCcCCCEEECCCCc-cCcc--C
Confidence            456666666643 4433 2223556666666666664 33332110        011 12566666666553 3333  1


Q ss_pred             CCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcce
Q 012933          255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH  334 (453)
Q Consensus       255 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~  334 (453)
                      +..+..+++|+.|+++++. +..++...  +..+++|+.|+++++..-.+.     ....+..+++|++|++++| .++.
T Consensus        93 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-----l~~~~~~l~~L~~L~Ls~N-~l~~  163 (276)
T 2z62_A           93 LGAFSGLSSLQKLVAVETN-LASLENFP--IGHLKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSN-KIQS  163 (276)
T ss_dssp             TTTTTTCTTCCEEECTTSC-CCCSTTCC--CTTCTTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECCSS-CCCE
T ss_pred             hhhhcCCccccEEECCCCC-ccccCchh--cccCCCCCEEECcCCccceec-----CchhhccCCCCCEEECCCC-CCCc
Confidence            2445666777777776643 33333322  556667777777665321100     0123456788888888888 6777


Q ss_pred             ecccCCcccccCCCcc----ceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEc-----
Q 012933          335 LWKENDESNKAFANLE----SLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIA-----  405 (453)
Q Consensus       335 l~~~~~~~~~~l~~L~----~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~-----  405 (453)
                      ++...+   ..+++|+    +|++++ +.++.++.......+|++|++++ +.++.++.. ....+++|++|+++     
T Consensus       164 ~~~~~~---~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~-~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          164 IYCTDL---RVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDT-NQLKSVPDG-IFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             ECGGGG---HHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCS-SCCSCCCTT-TTTTCCSCCEEECCSSCBC
T ss_pred             CCHHHh---hhhhhccccceeeecCC-CcccccCccccCCCcccEEECCC-CceeecCHh-HhcccccccEEEccCCccc
Confidence            766655   4555555    777877 56777777666666888888877 457777653 44677888888887     


Q ss_pred             -ccchhHHH
Q 012933          406 -DCKMIEQI  413 (453)
Q Consensus       406 -~C~~l~~~  413 (453)
                       +|+.++.+
T Consensus       238 c~c~~l~~l  246 (276)
T 2z62_A          238 CSCPRIDYL  246 (276)
T ss_dssp             CCTTTTHHH
T ss_pred             ccCCchHHH
Confidence             56666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.45  E-value=1.6e-12  Score=121.71  Aligned_cols=198  Identities=14%  Similarity=0.040  Sum_probs=128.1

Q ss_pred             cCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccccc
Q 012933          144 IGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQ  223 (453)
Q Consensus       144 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~  223 (453)
                      ..+++++++++.+.. +..++...      .+++++|+++++. ++.. +...+..+++|+.|+++++ .++.++..   
T Consensus         7 ~~l~~l~~l~~~~~~-l~~ip~~~------~~~l~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~---   73 (290)
T 1p9a_G            7 SKVASHLEVNCDKRN-LTALPPDL------PKDTTILHLSENL-LYTF-SLATLMPYTRLTQLNLDRA-ELTKLQVD---   73 (290)
T ss_dssp             ECSTTCCEEECTTSC-CSSCCSCC------CTTCCEEECTTSC-CSEE-EGGGGTTCTTCCEEECTTS-CCCEEECC---
T ss_pred             cccCCccEEECCCCC-CCcCCCCC------CCCCCEEEcCCCc-CCcc-CHHHhhcCCCCCEEECCCC-ccCcccCC---
Confidence            345777777777654 55555433      5789999999864 5544 3345788999999999885 35444321   


Q ss_pred             ccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccc
Q 012933          224 NADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFL  303 (453)
Q Consensus       224 ~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~  303 (453)
                              ..+++|++|++.++. ++.+   +..+..+++|+.|+++++ .++.++...  +..+++|+.|+++++.--.
T Consensus        74 --------~~l~~L~~L~Ls~N~-l~~l---~~~~~~l~~L~~L~l~~N-~l~~l~~~~--~~~l~~L~~L~L~~N~l~~  138 (290)
T 1p9a_G           74 --------GTLPVLGTLDLSHNQ-LQSL---PLLGQTLPALTVLDVSFN-RLTSLPLGA--LRGLGELQELYLKGNELKT  138 (290)
T ss_dssp             --------SCCTTCCEEECCSSC-CSSC---CCCTTTCTTCCEEECCSS-CCCCCCSST--TTTCTTCCEEECTTSCCCC
T ss_pred             --------CCCCcCCEEECCCCc-CCcC---chhhccCCCCCEEECCCC-cCcccCHHH--HcCCCCCCEEECCCCCCCc
Confidence                    133888999988763 4443   355677888899988875 455555433  5666677777777652211


Q ss_pred             ccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933          304 LAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK  380 (453)
Q Consensus       304 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  380 (453)
                      +.      ...+..+++|+.|+++++ .++.++.+.|   ..+++|+.|++++ +.++.+|..+...++|+++.+++
T Consensus       139 ~~------~~~~~~l~~L~~L~L~~N-~l~~l~~~~~---~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          139 LP------PGLLTPTPKLEKLSLANN-NLTELPAGLL---NGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             CC------TTTTTTCTTCCEEECTTS-CCSCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCS
T ss_pred             cC------hhhcccccCCCEEECCCC-cCCccCHHHh---cCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCC
Confidence            10      011235667777777776 5666666665   5677777777777 45667777666667777777765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.45  E-value=1.1e-12  Score=126.25  Aligned_cols=226  Identities=16%  Similarity=0.145  Sum_probs=147.9

Q ss_pred             cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (453)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~  253 (453)
                      .+++++|+++++ +++.+ +.+.+.++++|++|+++++.-.+.++..        ....+ +++.++...++.+++.+  
T Consensus        29 ~~~l~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~--------~f~~L-~~l~~~l~~~~N~l~~l--   95 (350)
T 4ay9_X           29 PRNAIELRFVLT-KLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEAD--------VFSNL-PKLHEIRIEKANNLLYI--   95 (350)
T ss_dssp             CTTCSEEEEESC-CCSEE-CTTSSTTCTTCCEEEEECCTTCCEECTT--------SBCSC-TTCCEEEEEEETTCCEE--
T ss_pred             CCCCCEEEccCC-cCCCc-CHHHHcCCCCCCEEECcCCCCCCccChh--------Hhhcc-hhhhhhhcccCCccccc--
Confidence            467777777774 35544 4445677777888888776443333210        00112 55566555556666665  


Q ss_pred             CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccccccccccccc-CCCcCEEeecCCCCc
Q 012933          254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVS-FPRLRWLELSGLHKV  332 (453)
Q Consensus       254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~-l~~L~~L~l~~~~~l  332 (453)
                      .+..+..+++|+.|+++++. +..++...  ......+..+++.++..+....     ...... ...++.|+++++ .+
T Consensus        96 ~~~~f~~l~~L~~L~l~~n~-l~~~~~~~--~~~~~~l~~l~l~~~~~i~~l~-----~~~f~~~~~~l~~L~L~~N-~i  166 (350)
T 4ay9_X           96 NPEAFQNLPNLQYLLISNTG-IKHLPDVH--KIHSLQKVLLDIQDNINIHTIE-----RNSFVGLSFESVILWLNKN-GI  166 (350)
T ss_dssp             CTTSBCCCTTCCEEEEEEEC-CSSCCCCT--TCCBSSCEEEEEESCTTCCEEC-----TTSSTTSBSSCEEEECCSS-CC
T ss_pred             Cchhhhhccccccccccccc-cccCCchh--hcccchhhhhhhcccccccccc-----ccchhhcchhhhhhccccc-cc
Confidence            24566778888888887753 34444332  3334456666666554433110     001112 246889999998 78


Q ss_pred             ceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhH
Q 012933          333 QHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIE  411 (453)
Q Consensus       333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~  411 (453)
                      +.++...|    ..++|+++.+.+++.++.+|.. +..+++|++|++++ ++++.+|..    .+.+|+.|.+.++.+++
T Consensus       167 ~~i~~~~f----~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~~----~~~~L~~L~~l~~~~l~  237 (350)
T 4ay9_X          167 QEIHNSAF----NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSY----GLENLKKLRARSTYNLK  237 (350)
T ss_dssp             CEECTTSS----TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCSS----SCTTCCEEECTTCTTCC
T ss_pred             cCCChhhc----cccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccChh----hhccchHhhhccCCCcC
Confidence            99988875    5678999999999999999975 68899999999988 689998763    35788889888888775


Q ss_pred             HHHhhccCCccCCCceeccccchhhhhh
Q 012933          412 QIIQLQVGEEAKDCNVFKELSCETMSKN  439 (453)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~  439 (453)
                      ++         +....++.|+.+++...
T Consensus       238 ~l---------P~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          238 KL---------PTLEKLVALMEASLTYP  256 (350)
T ss_dssp             CC---------CCTTTCCSCCEEECSCH
T ss_pred             cC---------CCchhCcChhhCcCCCC
Confidence            44         34556777777776543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.43  E-value=3.3e-12  Score=118.21  Aligned_cols=197  Identities=18%  Similarity=0.188  Sum_probs=102.6

Q ss_pred             CccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccccccccc
Q 012933          148 DMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADK  227 (453)
Q Consensus       148 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  227 (453)
                      +.+++++++.. +..++...      .+++++|+++++. ++.. +...+..+++|++|+++++ .+..++.        
T Consensus        17 ~~~~l~~~~~~-l~~ip~~~------~~~l~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~i~~--------   78 (270)
T 2o6q_A           17 NKNSVDCSSKK-LTAIPSNI------PADTKKLDLQSNK-LSSL-PSKAFHRLTKLRLLYLNDN-KLQTLPA--------   78 (270)
T ss_dssp             TTTEEECTTSC-CSSCCSCC------CTTCSEEECCSSC-CSCC-CTTSSSSCTTCCEEECCSS-CCSCCCT--------
T ss_pred             CCCEEEccCCC-CCccCCCC------CCCCCEEECcCCC-CCee-CHHHhcCCCCCCEEECCCC-ccCeeCh--------
Confidence            35566665543 44444322      4678888888764 4444 3334667777788877764 2333221        


Q ss_pred             CCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccc
Q 012933          228 EHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQ  307 (453)
Q Consensus       228 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  307 (453)
                       ..-..+++|++|++.++. ++.+  .+..+..+++|+.|+++++. ++.++...  +.                     
T Consensus        79 -~~~~~l~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~---------------------  130 (270)
T 2o6q_A           79 -GIFKELKNLETLWVTDNK-LQAL--PIGVFDQLVNLAELRLDRNQ-LKSLPPRV--FD---------------------  130 (270)
T ss_dssp             -TTTSSCTTCCEEECCSSC-CCCC--CTTTTTTCSSCCEEECCSSC-CCCCCTTT--TT---------------------
T ss_pred             -hhhcCCCCCCEEECCCCc-CCcC--CHhHcccccCCCEEECCCCc-cCeeCHHH--hC---------------------
Confidence             000112667777776553 3332  12345566677777776643 33333221  33                     


Q ss_pred             ccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCccccc
Q 012933          308 VQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLIN  386 (453)
Q Consensus       308 l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~  386 (453)
                               .+++|++|+++++ .++.++...+   ..+++|++|++++ +.++.++.. +..+++|++|++++ +.++.
T Consensus       131 ---------~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~  195 (270)
T 2o6q_A          131 ---------SLTKLTYLSLGYN-ELQSLPKGVF---DKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDN-NQLKR  195 (270)
T ss_dssp             ---------TCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS-SCCSC
T ss_pred             ---------cCcCCCEEECCCC-cCCccCHhHc---cCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCC-CcCCc
Confidence                     4455555555555 4555554444   4556666666665 345555442 44556666666655 34555


Q ss_pred             ccCCCcccccCCcceEEEcc
Q 012933          387 LLTFSTSESLVNLGRMMIAD  406 (453)
Q Consensus       387 l~~~~~~~~l~~L~~L~i~~  406 (453)
                      ++.. .+..+++|++|++++
T Consensus       196 ~~~~-~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          196 VPEG-AFDSLEKLKMLQLQE  214 (270)
T ss_dssp             CCTT-TTTTCTTCCEEECCS
T ss_pred             CCHH-HhccccCCCEEEecC
Confidence            4432 234455666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.42  E-value=1.1e-12  Score=123.98  Aligned_cols=81  Identities=15%  Similarity=0.178  Sum_probs=39.4

Q ss_pred             ccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccc
Q 012933           22 QVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF  101 (453)
Q Consensus        22 ~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  101 (453)
                      ..+.+++|++|++++| .++.++ .+..        +++|++|+++++ .++.++.   ...+++|++|++++|. ++.+
T Consensus        36 ~~~~l~~L~~L~l~~~-~i~~l~-~~~~--------l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~  100 (308)
T 1h6u_A           36 TQADLDGITTLSAFGT-GVTTIE-GVQY--------LNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNV  100 (308)
T ss_dssp             CHHHHHTCCEEECTTS-CCCCCT-TGGG--------CTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCC
T ss_pred             cHHHcCCcCEEEeeCC-CccCch-hhhc--------cCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCc
Confidence            3344556666666654 344443 2222        555666666553 3333322   3345555666655543 4443


Q ss_pred             ccCccCCCCcceEEecc
Q 012933          102 SHGILSTPKLHKVQVTE  118 (453)
Q Consensus       102 ~~~~~~~~~L~~L~l~~  118 (453)
                      + .+..+++|++|++++
T Consensus       101 ~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A          101 S-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             G-GGTTCTTCCEEECTT
T ss_pred             h-hhcCCCCCCEEECCC
Confidence            3 344455555555553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.40  E-value=2.6e-12  Score=121.33  Aligned_cols=194  Identities=15%  Similarity=0.173  Sum_probs=120.7

Q ss_pred             CCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccccccc
Q 012933          146 FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNA  225 (453)
Q Consensus       146 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  225 (453)
                      +++|++|++.++. +..++.   +  ..+++|++|++++|. ++...+   +..+++|++|+++++. +..++.      
T Consensus        40 l~~L~~L~l~~~~-i~~l~~---~--~~l~~L~~L~L~~n~-i~~~~~---~~~l~~L~~L~L~~n~-l~~~~~------  102 (308)
T 1h6u_A           40 LDGITTLSAFGTG-VTTIEG---V--QYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSGNP-LKNVSA------  102 (308)
T ss_dssp             HHTCCEEECTTSC-CCCCTT---G--GGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCSCC-CSCCGG------
T ss_pred             cCCcCEEEeeCCC-ccCchh---h--hccCCCCEEEccCCc-CCCChh---HccCCCCCEEEccCCc-CCCchh------
Confidence            5678888887775 444331   1  457888888888763 444422   6778888888888763 444321      


Q ss_pred             ccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccc
Q 012933          226 DKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLA  305 (453)
Q Consensus       226 ~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  305 (453)
                          .. .+++|++|++.++. ++.+    ..+..+++|+.|+++++. +..++.    +..+++|+.|+++++.--.  
T Consensus       103 ----~~-~l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~-l~~~~~----l~~l~~L~~L~l~~n~l~~--  165 (308)
T 1h6u_A          103 ----IA-GLQSIKTLDLTSTQ-ITDV----TPLAGLSNLQVLYLDLNQ-ITNISP----LAGLTNLQYLSIGNAQVSD--  165 (308)
T ss_dssp             ----GT-TCTTCCEEECTTSC-CCCC----GGGTTCTTCCEEECCSSC-CCCCGG----GGGCTTCCEEECCSSCCCC--
T ss_pred             ----hc-CCCCCCEEECCCCC-CCCc----hhhcCCCCCCEEECCCCc-cCcCcc----ccCCCCccEEEccCCcCCC--
Confidence                11 22778888887764 4443    236778888888887763 333322    4556677777777662211  


Q ss_pred             ccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccc
Q 012933          306 HQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLI  385 (453)
Q Consensus       306 ~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~  385 (453)
                            ++.+..+++|++|++++| .+++++.  +   ..+++|++|++++| .++.++. +..+++|++|++++ +.++
T Consensus       166 ------~~~l~~l~~L~~L~l~~n-~l~~~~~--l---~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~-N~i~  230 (308)
T 1h6u_A          166 ------LTPLANLSKLTTLKADDN-KISDISP--L---ASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN-QTIT  230 (308)
T ss_dssp             ------CGGGTTCTTCCEEECCSS-CCCCCGG--G---GGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE-EEEE
T ss_pred             ------ChhhcCCCCCCEEECCCC-ccCcChh--h---cCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccC-Ceee
Confidence                  112456677777777777 4555543  2   57777777777773 4555553 56677777777766 3455


Q ss_pred             ccc
Q 012933          386 NLL  388 (453)
Q Consensus       386 ~l~  388 (453)
                      ..+
T Consensus       231 ~~~  233 (308)
T 1h6u_A          231 NQP  233 (308)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.40  E-value=1.2e-13  Score=130.79  Aligned_cols=208  Identities=19%  Similarity=0.139  Sum_probs=109.9

Q ss_pred             CCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhc-----CCCcEEEeccCccchhhhc
Q 012933          145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCL-----NNLQWLEVRNCDSIEEVLH  219 (453)
Q Consensus       145 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l-----~~L~~L~l~~~~~l~~~~~  219 (453)
                      .+++|++|+++++.-...++... + ...+++|++|+++++. ++.. + ..+..+     ++|++|+++++. +..++.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~-~-~~~l~~L~~L~Ls~N~-l~~~-~-~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~  166 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPL-L-EATGPDLNILNLRNVS-WATR-D-AWLAELQQWLKPGLKVLSIAQAH-SLNFSC  166 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCS-S-SCCSCCCSEEEEESCB-CSSS-S-SHHHHHHTTCCTTCCEEEEESCS-CCCCCT
T ss_pred             CcCCccEEEccCCcccchhHHHH-H-HhcCCCccEEEccCCC-Ccch-h-HHHHHHHHhhcCCCcEEEeeCCC-CccchH
Confidence            57888888888876222333321 1 1447888888888864 5544 3 235555     677777777652 332211


Q ss_pred             ccccccccCCCCCCCCccceeeeccCCCcceeccC-CCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccc
Q 012933          220 LEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF-TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTS  298 (453)
Q Consensus       220 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~  298 (453)
                      .        ....+ ++|++|++.++.-...+... ...+..+++|+.|+++++. ++.++..                 
T Consensus       167 ~--------~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-----------------  219 (312)
T 1wwl_A          167 E--------QVRVF-PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGV-----------------  219 (312)
T ss_dssp             T--------TCCCC-SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHH-----------------
T ss_pred             H--------HhccC-CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHH-----------------
Confidence            0        11112 55566665554422211000 0012445555555555542 1111000                 


Q ss_pred             cccccccccccccccccccCCCcCEEeecCCCCcceec-ccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEe
Q 012933          299 EENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLW-KENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALE  377 (453)
Q Consensus       299 ~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~  377 (453)
                                  ...-...+++|++|+++++ .++... ...+   ..+++|++|++++ +.++.+|..+.  ++|++|+
T Consensus       220 ------------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~  280 (312)
T 1wwl_A          220 ------------CSALAAARVQLQGLDLSHN-SLRDAAGAPSC---DWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLD  280 (312)
T ss_dssp             ------------HHHHHHTTCCCSEEECTTS-CCCSSCCCSCC---CCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEE
T ss_pred             ------------HHHHHhcCCCCCEEECCCC-cCCcccchhhh---hhcCCCCEEECCC-CccChhhhhcc--CCceEEE
Confidence                        0000124567777777776 444433 2222   4567777777777 45667766554  6777777


Q ss_pred             cccCcccccccCCCcccccCCcceEEEcccc
Q 012933          378 VSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       378 l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                      +++ ++++.+|.   ...+++|++|++++.+
T Consensus       281 Ls~-N~l~~~p~---~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          281 LSY-NRLDRNPS---PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCS-SCCCSCCC---TTTSCEEEEEECTTCT
T ss_pred             CCC-CCCCCChh---HhhCCCCCEEeccCCC
Confidence            766 56666643   4566777777776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.38  E-value=7.2e-12  Score=116.02  Aligned_cols=177  Identities=15%  Similarity=0.157  Sum_probs=97.5

Q ss_pred             CccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCccee
Q 012933          172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF  251 (453)
Q Consensus       172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~  251 (453)
                      ..+++|++|.+.++. ++..   ..+..+++|++|+++++. +..+..          .. .+++|++|++.++. ++.+
T Consensus        38 ~~l~~L~~L~l~~~~-i~~~---~~l~~l~~L~~L~l~~n~-l~~~~~----------l~-~l~~L~~L~L~~n~-l~~~  100 (272)
T 3rfs_A           38 NELNSIDQIIANNSD-IKSV---QGIQYLPNVRYLALGGNK-LHDISA----------LK-ELTNLTYLILTGNQ-LQSL  100 (272)
T ss_dssp             HHHTTCCEEECTTSC-CCCC---TTGGGCTTCCEEECTTSC-CCCCGG----------GT-TCTTCCEEECTTSC-CCCC
T ss_pred             ccccceeeeeeCCCC-cccc---cccccCCCCcEEECCCCC-CCCchh----------hc-CCCCCCEEECCCCc-cCcc
Confidence            457888888888864 4332   236778888888888763 333321          11 22778888887763 4443


Q ss_pred             ccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCC
Q 012933          252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK  331 (453)
Q Consensus       252 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~  331 (453)
                        .+..+..+++|+.|+++++. ++.++...  +..+++|+.|+++++.--.+.      ...+..+++|++|++++| .
T Consensus       101 --~~~~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~l~~n-~  168 (272)
T 3rfs_A          101 --PNGVFDKLTNLKELVLVENQ-LQSLPDGV--FDKLTNLTYLNLAHNQLQSLP------KGVFDKLTNLTELDLSYN-Q  168 (272)
T ss_dssp             --CTTTTTTCTTCCEEECTTSC-CCCCCTTT--TTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSS-C
T ss_pred             --ChhHhcCCcCCCEEECCCCc-CCccCHHH--hccCCCCCEEECCCCccCccC------HHHhccCccCCEEECCCC-C
Confidence              22346677888888887754 34444332  445556666666554211100      011234555666666555 4


Q ss_pred             cceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccC
Q 012933          332 VQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKC  381 (453)
Q Consensus       332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c  381 (453)
                      ++.++...+   ..+++|+.|++++| .++.++.. +..+++|++|+++++
T Consensus       169 l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          169 LQSLPEGVF---DKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCccCHHHh---cCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCC
Confidence            555544444   45556666666553 34444432 345555666665553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.38  E-value=5.9e-12  Score=116.49  Aligned_cols=160  Identities=16%  Similarity=0.158  Sum_probs=107.6

Q ss_pred             cccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceec
Q 012933          257 NIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLW  336 (453)
Q Consensus       257 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~  336 (453)
                      .+..+++|+.|+++++ .++.++...  +..+++|+.|+++++.--.+.      ...+..+++|++|+++++ .++.++
T Consensus        56 ~~~~l~~L~~L~l~~n-~l~~i~~~~--~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n-~l~~~~  125 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDN-KLQTLPAGI--FKELKNLETLWVTDNKLQALP------IGVFDQLVNLAELRLDRN-QLKSLP  125 (270)
T ss_dssp             SSSSCTTCCEEECCSS-CCSCCCTTT--TSSCTTCCEEECCSSCCCCCC------TTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred             HhcCCCCCCEEECCCC-ccCeeChhh--hcCCCCCCEEECCCCcCCcCC------HhHcccccCCCEEECCCC-ccCeeC
Confidence            3445555555555553 233333322  344555666655554211100      012346789999999998 688888


Q ss_pred             ccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHh
Q 012933          337 KENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQ  415 (453)
Q Consensus       337 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~  415 (453)
                      ...+   ..+++|++|++++ +.++.++.. +..+++|++|++++ +.++.++.. .+..+++|++|+++++. ++.+  
T Consensus       126 ~~~~---~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~--  196 (270)
T 2o6q_A          126 PRVF---DSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEG-AFDKLTELKTLKLDNNQ-LKRV--  196 (270)
T ss_dssp             TTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTT-TTTTCTTCCEEECCSSC-CSCC--
T ss_pred             HHHh---CcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecC-CcCcEeChh-HhccCCCcCEEECCCCc-CCcC--
Confidence            7777   8999999999999 468888875 67899999999988 568887663 45678999999999984 3221  


Q ss_pred             hccCCccCCCceeccccchhhhhhH
Q 012933          416 LQVGEEAKDCNVFKELSCETMSKNE  440 (453)
Q Consensus       416 ~~~~~~~~~~~~~~~l~~l~l~~~~  440 (453)
                           .+..+..++.|+.++++++|
T Consensus       197 -----~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          197 -----PEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             -----CTTTTTTCTTCCEEECCSSC
T ss_pred             -----CHHHhccccCCCEEEecCCC
Confidence                 12234567888899888876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.35  E-value=6.6e-12  Score=116.51  Aligned_cols=201  Identities=17%  Similarity=0.144  Sum_probs=104.4

Q ss_pred             CcccccceEEeccccchhhhhc-ccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc
Q 012933           24 GIPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS  102 (453)
Q Consensus        24 ~~~~~L~~L~L~~c~~l~~i~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  102 (453)
                      +..++|++|+++++ .++.++. .+..        +++|++|+++++ .++.++... ...+++|++|+++++. ++.++
T Consensus        25 ~l~~~l~~L~ls~n-~l~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~   92 (276)
T 2z62_A           25 NLPFSTKNLDLSFN-PLRHLGSYSFFS--------FPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGNP-IQSLA   92 (276)
T ss_dssp             SSCTTCCEEECTTC-CCCEECTTTTTT--------CTTCSEEECTTC-CCCEECTTT-TTTCTTCCEEECTTCC-CCEEC
T ss_pred             CCCCCccEEECCCC-cccccCHhHhcc--------ccCCcEEECCCC-cCCccCHHH-ccCCcCCCEEECCCCc-cCccC
Confidence            33567888888886 5666654 3333        778888888874 455554332 4567788888888764 44433


Q ss_pred             -cCccCCCCcceEEeccccccccccccCCccchhHHHHH-HhhcCCCCccEEEEeeCCCCcc--cccCCCCCcCccCCCc
Q 012933          103 -HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY-EEMIGFRDMEYLQLSYFPHLKE--IWHGQALPVSFFNNLA  178 (453)
Q Consensus       103 -~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~--~~~~~~l~~~~l~~L~  178 (453)
                       ..+..+++|++|+++++.-               ..+. ..+..+++|++|+++++. +..  ++...    ..+++|+
T Consensus        93 ~~~~~~l~~L~~L~l~~n~l---------------~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~----~~l~~L~  152 (276)
T 2z62_A           93 LGAFSGLSSLQKLVAVETNL---------------ASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYF----SNLTNLE  152 (276)
T ss_dssp             TTTTTTCTTCCEEECTTSCC---------------CCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGG----GGCTTCC
T ss_pred             hhhhcCCccccEEECCCCCc---------------cccCchhcccCCCCCEEECcCCc-cceecCchhh----ccCCCCC
Confidence             4456677777777775421               1111 123445666666666654 322  11111    3356666


Q ss_pred             EEEecCCCCccccCchhHHhhcCCCc----EEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccC
Q 012933          179 RLVVDDCTNMSSAIPANLLRCLNNLQ----WLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF  254 (453)
Q Consensus       179 ~L~l~~c~~l~~~~~~~~l~~l~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~  254 (453)
                      +|+++++. ++.. +...+..+++|+    .|+++++ .+..++.         ..... .+|++|++.++. ++.++  
T Consensus       153 ~L~Ls~N~-l~~~-~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~---------~~~~~-~~L~~L~L~~n~-l~~~~--  216 (276)
T 2z62_A          153 HLDLSSNK-IQSI-YCTDLRVLHQMPLLNLSLDLSLN-PMNFIQP---------GAFKE-IRLKELALDTNQ-LKSVP--  216 (276)
T ss_dssp             EEECCSSC-CCEE-CGGGGHHHHTCTTCCEEEECCSS-CCCEECT---------TSSCS-CCEEEEECCSSC-CSCCC--
T ss_pred             EEECCCCC-CCcC-CHHHhhhhhhccccceeeecCCC-cccccCc---------cccCC-CcccEEECCCCc-eeecC--
Confidence            66666653 3333 222244444444    5555553 2222211         00001 356666665543 33321  


Q ss_pred             CCcccCCCCccEEeeecC
Q 012933          255 TGNIIELPELQHLTIQNC  272 (453)
Q Consensus       255 ~~~~~~l~~L~~L~l~~c  272 (453)
                      +..+..+++|+.|+++++
T Consensus       217 ~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          217 DGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             TTTTTTCCSCCEEECCSS
T ss_pred             HhHhcccccccEEEccCC
Confidence            223455566666666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.34  E-value=2.5e-11  Score=113.46  Aligned_cols=197  Identities=16%  Similarity=0.095  Sum_probs=147.0

Q ss_pred             ccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceec
Q 012933          173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC  252 (453)
Q Consensus       173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~  252 (453)
                      .++++++++++++ +++.+ |..+   .++++.|+++++. +..+...        ... .+++|++|++.++. ++.++
T Consensus         8 ~l~~l~~l~~~~~-~l~~i-p~~~---~~~l~~L~L~~N~-l~~~~~~--------~~~-~l~~L~~L~L~~n~-l~~~~   71 (290)
T 1p9a_G            8 KVASHLEVNCDKR-NLTAL-PPDL---PKDTTILHLSENL-LYTFSLA--------TLM-PYTRLTQLNLDRAE-LTKLQ   71 (290)
T ss_dssp             CSTTCCEEECTTS-CCSSC-CSCC---CTTCCEEECTTSC-CSEEEGG--------GGT-TCTTCCEEECTTSC-CCEEE
T ss_pred             ccCCccEEECCCC-CCCcC-CCCC---CCCCCEEEcCCCc-CCccCHH--------Hhh-cCCCCCEEECCCCc-cCccc
Confidence            4788999999984 46655 4332   3689999999864 4443220        111 23899999998864 66653


Q ss_pred             cCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCc
Q 012933          253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV  332 (453)
Q Consensus       253 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l  332 (453)
                          ....+++|+.|+++++ .++.++..   +..+++|+.|+++++.--.+.      ...+..+++|++|+++++ .+
T Consensus        72 ----~~~~l~~L~~L~Ls~N-~l~~l~~~---~~~l~~L~~L~l~~N~l~~l~------~~~~~~l~~L~~L~L~~N-~l  136 (290)
T 1p9a_G           72 ----VDGTLPVLGTLDLSHN-QLQSLPLL---GQTLPALTVLDVSFNRLTSLP------LGALRGLGELQELYLKGN-EL  136 (290)
T ss_dssp             ----CCSCCTTCCEEECCSS-CCSSCCCC---TTTCTTCCEEECCSSCCCCCC------SSTTTTCTTCCEEECTTS-CC
T ss_pred             ----CCCCCCcCCEEECCCC-cCCcCchh---hccCCCCCEEECCCCcCcccC------HHHHcCCCCCCEEECCCC-CC
Confidence                2378999999999986 45566654   677889999999987332211      123467899999999999 78


Q ss_pred             ceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccCCcceEEEccc
Q 012933          333 QHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC  407 (453)
Q Consensus       333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C  407 (453)
                      +.++.+.|   ..+++|+.|++++ +.++.+|.. +..+++|++|++++ +.++.+|..  ....++|+++++.+.
T Consensus       137 ~~~~~~~~---~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~--~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          137 KTLPPGLL---TPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKG--FFGSHLLPFAFLHGN  205 (290)
T ss_dssp             CCCCTTTT---TTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTT--TTTTCCCSEEECCSC
T ss_pred             CccChhhc---ccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCC-CcCCccChh--hcccccCCeEEeCCC
Confidence            88888877   7899999999999 678899876 46799999999987 678888763  445679999999843

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.29  E-value=2.2e-11  Score=114.95  Aligned_cols=84  Identities=15%  Similarity=0.103  Sum_probs=55.1

Q ss_pred             cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCccccc
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESL  396 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l  396 (453)
                      .+++|++|+++++ .++......+.....+++|++|++++ +.++.+|..+.  ++|++|++++ ++++.++.   +..+
T Consensus       222 ~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~---~~~l  293 (310)
T 4glp_A          222 AGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQ---PDEL  293 (310)
T ss_dssp             HTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCC---TTSC
T ss_pred             cCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCch---hhhC
Confidence            4578888888887 45555222221112347888888887 46777777653  7888888876 56776644   4566


Q ss_pred             CCcceEEEcccc
Q 012933          397 VNLGRMMIADCK  408 (453)
Q Consensus       397 ~~L~~L~i~~C~  408 (453)
                      ++|++|++++.+
T Consensus       294 ~~L~~L~L~~N~  305 (310)
T 4glp_A          294 PEVDNLTLDGNP  305 (310)
T ss_dssp             CCCSCEECSSTT
T ss_pred             CCccEEECcCCC
Confidence            888888887654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.26  E-value=1e-10  Score=108.27  Aligned_cols=192  Identities=13%  Similarity=0.124  Sum_probs=113.5

Q ss_pred             CCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccccccc
Q 012933          146 FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNA  225 (453)
Q Consensus       146 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  225 (453)
                      +++|++|.+.++. +..++.   +  ..+++|++|+++++. ++..   ..+..+++|++|+++++ .++.++..     
T Consensus        40 l~~L~~L~l~~~~-i~~~~~---l--~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~n-~l~~~~~~-----  103 (272)
T 3rfs_A           40 LNSIDQIIANNSD-IKSVQG---I--QYLPNVRYLALGGNK-LHDI---SALKELTNLTYLILTGN-QLQSLPNG-----  103 (272)
T ss_dssp             HTTCCEEECTTSC-CCCCTT---G--GGCTTCCEEECTTSC-CCCC---GGGTTCTTCCEEECTTS-CCCCCCTT-----
T ss_pred             ccceeeeeeCCCC-cccccc---c--ccCCCCcEEECCCCC-CCCc---hhhcCCCCCCEEECCCC-ccCccChh-----
Confidence            5677777777765 333221   1  347778888887764 4432   23667777888887775 33333210     


Q ss_pred             ccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccc
Q 012933          226 DKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLA  305 (453)
Q Consensus       226 ~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  305 (453)
                         ... .+++|++|++.++. ++.+  .+..+..+++|+.|++++| .++.++...  +..+++|+.|+++++.--.+.
T Consensus       104 ---~~~-~l~~L~~L~L~~n~-l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A          104 ---VFD-KLTNLKELVLVENQ-LQSL--PDGVFDKLTNLTYLNLAHN-QLQSLPKGV--FDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             ---TTT-TCTTCCEEECTTSC-CCCC--CTTTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSSCCCCCC
T ss_pred             ---Hhc-CCcCCCEEECCCCc-CCcc--CHHHhccCCCCCEEECCCC-ccCccCHHH--hccCccCCEEECCCCCcCccC
Confidence               011 22677777777764 4433  2234667777888888776 445554433  566777788877776321100


Q ss_pred             ccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933          306 HQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK  380 (453)
Q Consensus       306 ~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  380 (453)
                            ...++.+++|++|++++| .++.++...+   ..+++|+.|++++++-       .+.+++|+.+.++.
T Consensus       174 ------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~l~~N~~-------~~~~~~l~~l~~~~  231 (272)
T 3rfs_A          174 ------EGVFDKLTQLKDLRLYQN-QLKSVPDGVF---DRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWI  231 (272)
T ss_dssp             ------TTTTTTCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSSCB-------CCCTTTTHHHHHHH
T ss_pred             ------HHHhcCCccCCEEECCCC-cCCccCHHHH---hCCcCCCEEEccCCCc-------cccCcHHHHHHHHH
Confidence                  011345677888888777 5666666555   6777788888877532       13356677776655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.25  E-value=1e-10  Score=106.83  Aligned_cols=86  Identities=20%  Similarity=0.206  Sum_probs=54.4

Q ss_pred             ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEecccCcccccccCCCccc
Q 012933          316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSE  394 (453)
Q Consensus       316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~  394 (453)
                      ..+++|++|+++++ .++.++...+   ..+++|+.|++++ +.++.++. .+..+++|++|++++ +.++.++.. ...
T Consensus       104 ~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~~  176 (251)
T 3m19_A          104 DHLTQLDKLYLGGN-QLKSLPSGVF---DRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHG-AFD  176 (251)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTT-TTT
T ss_pred             cccCCCCEEEcCCC-cCCCcChhHh---ccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCC-CcCCccCHH-HHh
Confidence            35567777777776 5666665555   5677777777777 35666665 356667777777766 456665542 344


Q ss_pred             ccCCcceEEEcccc
Q 012933          395 SLVNLGRMMIADCK  408 (453)
Q Consensus       395 ~l~~L~~L~i~~C~  408 (453)
                      .+++|++|++.+++
T Consensus       177 ~l~~L~~L~l~~N~  190 (251)
T 3m19_A          177 RLGKLQTITLFGNQ  190 (251)
T ss_dssp             TCTTCCEEECCSCC
T ss_pred             CCCCCCEEEeeCCc
Confidence            56777777776543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.22  E-value=3.7e-11  Score=113.45  Aligned_cols=184  Identities=16%  Similarity=0.099  Sum_probs=111.7

Q ss_pred             CccceeeeccCCCcceeccC-CCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccccccccc
Q 012933          235 PKLYGLRLIDLPKLKRFCNF-TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFD  313 (453)
Q Consensus       235 ~~L~~L~L~~~~~l~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~  313 (453)
                      ++|++|++.++.--...+.. ...+..+++|+.|+++++.- ...+...  +..+++|+.|+++++.-.... .+. ...
T Consensus       117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~  191 (310)
T 4glp_A          117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQ--VRAFPALTSLDLSDNPGLGER-GLM-AAL  191 (310)
T ss_dssp             BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTS--CCCCTTCCEEECCSCTTCHHH-HHH-TTS
T ss_pred             CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHH--hccCCCCCEEECCCCCCccch-hhh-HHH
Confidence            56666666654311110000 01223566777777766543 3333332  556667777777766321100 000 001


Q ss_pred             ccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCcccc-CCCCCCC---CCCCEEecccCcccccccC
Q 012933          314 EKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHL---ENLEALEVSKCHGLINLLT  389 (453)
Q Consensus       314 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l---~~L~~L~l~~c~~l~~l~~  389 (453)
                      ..+.+++|++|++++| .++.++.........+++|++|++++ +.++.+ |..+..+   ++|++|++++ ++++.+|.
T Consensus       192 ~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~  268 (310)
T 4glp_A          192 CPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPK  268 (310)
T ss_dssp             CTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCS
T ss_pred             hhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCC-CCCCchhh
Confidence            1246789999999998 56655432110115789999999999 457665 6665555   7999999977 67888876


Q ss_pred             CCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933          390 FSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE  440 (453)
Q Consensus       390 ~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~  440 (453)
                      . .+   ++|++|+++++.--          ..+....++.|+.|++++++
T Consensus       269 ~-~~---~~L~~L~Ls~N~l~----------~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          269 G-LP---AKLRVLDLSSNRLN----------RAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             C-CC---SCCSCEECCSCCCC----------SCCCTTSCCCCSCEECSSTT
T ss_pred             h-hc---CCCCEEECCCCcCC----------CCchhhhCCCccEEECcCCC
Confidence            3 32   79999999988631          11234567999999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.20  E-value=7.9e-11  Score=103.40  Aligned_cols=152  Identities=11%  Similarity=0.110  Sum_probs=98.8

Q ss_pred             cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc
Q 012933           23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS  102 (453)
Q Consensus        23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  102 (453)
                      .+.+++|++|+++++ .++.++ .+..        +++|++|+++++ .++.++   ....+++|++|++++|.--...+
T Consensus        40 ~~~l~~L~~L~l~~n-~i~~l~-~l~~--------l~~L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~  105 (197)
T 4ezg_A           40 EAQMNSLTYITLANI-NVTDLT-GIEY--------AHNIKDLTINNI-HATNYN---PISGLSNLERLRIMGKDVTSDKI  105 (197)
T ss_dssp             HHHHHTCCEEEEESS-CCSCCT-TGGG--------CTTCSEEEEESC-CCSCCG---GGTTCTTCCEEEEECTTCBGGGS
T ss_pred             hhhcCCccEEeccCC-CccChH-HHhc--------CCCCCEEEccCC-CCCcch---hhhcCCCCCEEEeECCccCcccC
Confidence            356788888888886 566666 4444        788888888886 444443   24568888888888865333356


Q ss_pred             cCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEe
Q 012933          103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV  182 (453)
Q Consensus       103 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l  182 (453)
                      ..+..+++|++|+++++.-              ....+..+..+++|++|+++++..+..++. .    ..+++|++|++
T Consensus       106 ~~l~~l~~L~~L~Ls~n~i--------------~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-l----~~l~~L~~L~l  166 (197)
T 4ezg_A          106 PNLSGLTSLTLLDISHSAH--------------DDSILTKINTLPKVNSIDLSYNGAITDIMP-L----KTLPELKSLNI  166 (197)
T ss_dssp             CCCTTCTTCCEEECCSSBC--------------BGGGHHHHTTCSSCCEEECCSCTBCCCCGG-G----GGCSSCCEEEC
T ss_pred             hhhcCCCCCCEEEecCCcc--------------CcHhHHHHhhCCCCCEEEccCCCCccccHh-h----cCCCCCCEEEC
Confidence            6677788888888885421              112344555677788888777754544431 1    34677777777


Q ss_pred             cCCCCccccCchhHHhhcCCCcEEEeccC
Q 012933          183 DDCTNMSSAIPANLLRCLNNLQWLEVRNC  211 (453)
Q Consensus       183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~  211 (453)
                      ++|. +++. +  .+..+++|+.|+++++
T Consensus       167 ~~n~-i~~~-~--~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          167 QFDG-VHDY-R--GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             TTBC-CCCC-T--TGGGCSSCCEEEECBC
T ss_pred             CCCC-CcCh-H--HhccCCCCCEEEeeCc
Confidence            7764 4433 2  3666777777777664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.17  E-value=1.6e-12  Score=126.88  Aligned_cols=290  Identities=14%  Similarity=0.077  Sum_probs=162.8

Q ss_pred             CccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCC--CCc-ccccCCC-C--C
Q 012933           97 NMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFP--HLK-EIWHGQA-L--P  170 (453)
Q Consensus        97 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~-~~~~~~~-l--~  170 (453)
                      .+..++..+..+++|++|++++|.-      .    ......+...+..+++|++|+++++.  .+. .++.+.. +  .
T Consensus        20 ~~~~l~~~l~~~~~L~~L~L~~n~i------~----~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~   89 (386)
T 2ca6_A           20 DEKSVFAVLLEDDSVKEIVLSGNTI------G----TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA   89 (386)
T ss_dssp             HHHTTSHHHHHCSCCCEEECTTSEE------C----HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCccEEECCCCCC------C----HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence            3456777777889999999996521      0    11223455567788999999999874  121 1111100 0  0


Q ss_pred             cCccCCCcEEEecCCCCcccc---CchhHHhhcCCCcEEEeccCccchhhhcccccccccC-----CCCCCCCccceeee
Q 012933          171 VSFFNNLARLVVDDCTNMSSA---IPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKE-----HRGPLFPKLYGLRL  242 (453)
Q Consensus       171 ~~~l~~L~~L~l~~c~~l~~~---~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~L~~L~L  242 (453)
                      ...+++|++|+++++. +...   .....+..+++|++|++++|. +.......-...+..     ... ..++|++|.+
T Consensus        90 l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~-~~~~L~~L~L  166 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAK-NAPPLRSIIC  166 (386)
T ss_dssp             HTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHH-TCCCCCEEEC
T ss_pred             HhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcc-cCCCCcEEEC
Confidence            1347899999999875 4331   012347889999999999974 332211000000000     000 0068999999


Q ss_pred             ccCCCcce--eccCCCcccCCCCccEEeeecCCCCce-----eccCCcccccCCCccccccccccccccccccccccccc
Q 012933          243 IDLPKLKR--FCNFTGNIIELPELQHLTIQNCPDMET-----FISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEK  315 (453)
Q Consensus       243 ~~~~~l~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~-----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~  315 (453)
                      .++. ++.  ++.....+..+++|+.|++++|. ++.     +....  +..+++|+.|+++++.--..  +.......+
T Consensus       167 ~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~--l~~~~~L~~L~Ls~n~l~~~--g~~~l~~~l  240 (386)
T 2ca6_A          167 GRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEG--LAYCQELKVLDLQDNTFTHL--GSSALAIAL  240 (386)
T ss_dssp             CSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTT--GGGCTTCCEEECCSSCCHHH--HHHHHHHHG
T ss_pred             CCCC-CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHH--hhcCCCccEEECcCCCCCcH--HHHHHHHHH
Confidence            8875 321  11111245678899999999874 331     11112  56677888888888742100  000001124


Q ss_pred             ccCCCcCEEeecCCCCcceecccCCcc-c--ccCCCccceeeccCCCccc-----cCCCC-CCCCCCCEEecccCccccc
Q 012933          316 VSFPRLRWLELSGLHKVQHLWKENDES-N--KAFANLESLEISECSKLQK-----LVPPS-WHLENLEALEVSKCHGLIN  386 (453)
Q Consensus       316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~-~--~~l~~L~~L~l~~c~~l~~-----l~~~~-~~l~~L~~L~l~~c~~l~~  386 (453)
                      ..+++|++|++++| .++......++. .  ..+++|++|++++| .++.     +|..+ .++++|++|+++++ .+..
T Consensus       241 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~  317 (386)
T 2ca6_A          241 KSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSE  317 (386)
T ss_dssp             GGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCT
T ss_pred             ccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCc
Confidence            56788888888888 454432111110 0  23788888888885 4554     66655 55788888888774 4444


Q ss_pred             cc--CCCcccccCCcceEEEcccc
Q 012933          387 LL--TFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       387 l~--~~~~~~~l~~L~~L~i~~C~  408 (453)
                      ..  ...+...++.++..++..-.
T Consensus       318 ~~~~~~~l~~~l~~~~~~~l~~~d  341 (386)
T 2ca6_A          318 EDDVVDEIREVFSTRGRGELDELD  341 (386)
T ss_dssp             TSHHHHHHHHHHHHHTCCEECCCC
T ss_pred             chhHHHHHHHHhhhcCcchhhhcc
Confidence            32  12233445566655554433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.17  E-value=1.9e-10  Score=107.51  Aligned_cols=174  Identities=17%  Similarity=0.202  Sum_probs=121.2

Q ss_pred             CccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCccee
Q 012933          172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF  251 (453)
Q Consensus       172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~  251 (453)
                      ..+++|++|++++|. ++.. +  .+..+++|+.|+++++ .+..++..          . .+++|++|++.++. ++.+
T Consensus        43 ~~l~~L~~L~l~~~~-i~~~-~--~~~~l~~L~~L~L~~n-~l~~~~~l----------~-~l~~L~~L~l~~n~-l~~~  105 (291)
T 1h6t_A           43 NELNSIDQIIANNSD-IKSV-Q--GIQYLPNVTKLFLNGN-KLTDIKPL----------A-NLKNLGWLFLDENK-VKDL  105 (291)
T ss_dssp             HHHHTCCEEECTTSC-CCCC-T--TGGGCTTCCEEECCSS-CCCCCGGG----------T-TCTTCCEEECCSSC-CCCG
T ss_pred             hhcCcccEEEccCCC-cccC-h--hHhcCCCCCEEEccCC-ccCCCccc----------c-cCCCCCEEECCCCc-CCCC
Confidence            458899999999874 4444 2  3778999999999886 44444321          1 23889999998864 5543


Q ss_pred             ccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCC
Q 012933          252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK  331 (453)
Q Consensus       252 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~  331 (453)
                          ..+..+++|+.|++++|. +..++  .  +..+++|+.|+++++.--.        ++.+..+++|++|++++| .
T Consensus       106 ----~~l~~l~~L~~L~L~~n~-i~~~~--~--l~~l~~L~~L~l~~n~l~~--------~~~l~~l~~L~~L~L~~N-~  167 (291)
T 1h6t_A          106 ----SSLKDLKKLKSLSLEHNG-ISDIN--G--LVHLPQLESLYLGNNKITD--------ITVLSRLTKLDTLSLEDN-Q  167 (291)
T ss_dssp             ----GGGTTCTTCCEEECTTSC-CCCCG--G--GGGCTTCCEEECCSSCCCC--------CGGGGGCTTCSEEECCSS-C
T ss_pred             ----hhhccCCCCCEEECCCCc-CCCCh--h--hcCCCCCCEEEccCCcCCc--------chhhccCCCCCEEEccCC-c
Confidence                347888999999998864 44442  1  5667788888888763221        134567788888888887 5


Q ss_pred             cceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCccccccc
Q 012933          332 VQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLL  388 (453)
Q Consensus       332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~  388 (453)
                      ++.++.  +   ..+++|+.|+++++ .+++++. +..+++|+.|++++ +.+...+
T Consensus       168 l~~~~~--l---~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~-n~i~~~~  216 (291)
T 1h6t_A          168 ISDIVP--L---AGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFS-QECLNKP  216 (291)
T ss_dssp             CCCCGG--G---TTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEE-EEEECCC
T ss_pred             cccchh--h---cCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcC-CcccCCc
Confidence            666654  3   67888888888884 6777654 66788888888876 4455443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.17  E-value=1.3e-10  Score=101.99  Aligned_cols=57  Identities=16%  Similarity=0.319  Sum_probs=23.9

Q ss_pred             cCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcc
Q 012933          345 AFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIAD  406 (453)
Q Consensus       345 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~  406 (453)
                      .+++|++|++++|..+++++ .+..+++|++|++++ +.+++++   ....+++|++|++++
T Consensus       134 ~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~---~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYR---GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCT---TGGGCSSCCEEEECB
T ss_pred             hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChH---HhccCCCCCEEEeeC
Confidence            44444444444433344433 233444444444444 2333332   123344455555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.17  E-value=9.9e-11  Score=109.45  Aligned_cols=167  Identities=14%  Similarity=0.234  Sum_probs=86.0

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ  137 (453)
Q Consensus        58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  137 (453)
                      +++|+.|+++++ .++.++   ....+++|++|++++| +++.++. +..+++|++|+++++.               +.
T Consensus        45 l~~L~~L~l~~~-~i~~~~---~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~---------------l~  103 (291)
T 1h6t_A           45 LNSIDQIIANNS-DIKSVQ---GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK---------------VK  103 (291)
T ss_dssp             HHTCCEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC---------------CC
T ss_pred             cCcccEEEccCC-CcccCh---hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc---------------CC
Confidence            445555555542 233221   1334555555555554 2443333 4445555555555331               11


Q ss_pred             HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933          138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV  217 (453)
Q Consensus       138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~  217 (453)
                      .+ ..+..+++|++|+++++. +..++.   +  ..+++|++|+++++. ++..   ..+..+++|+.|+++++ .+.++
T Consensus       104 ~~-~~l~~l~~L~~L~L~~n~-i~~~~~---l--~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~N-~l~~~  171 (291)
T 1h6t_A          104 DL-SSLKDLKKLKSLSLEHNG-ISDING---L--VHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDN-QISDI  171 (291)
T ss_dssp             CG-GGGTTCTTCCEEECTTSC-CCCCGG---G--GGCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS-CCCCC
T ss_pred             CC-hhhccCCCCCEEECCCCc-CCCChh---h--cCCCCCCEEEccCCc-CCcc---hhhccCCCCCEEEccCC-ccccc
Confidence            11 123445666666666554 333221   1  346677777777653 3333   23666777777777765 34433


Q ss_pred             hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCC
Q 012933          218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCP  273 (453)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~  273 (453)
                      +..          . .+++|++|++.++ .++++    ..+..+++|+.|++++++
T Consensus       172 ~~l----------~-~l~~L~~L~L~~N-~i~~l----~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          172 VPL----------A-GLTKLQNLYLSKN-HISDL----RALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             GGG----------T-TCTTCCEEECCSS-CCCBC----GGGTTCTTCSEEEEEEEE
T ss_pred             hhh----------c-CCCccCEEECCCC-cCCCC----hhhccCCCCCEEECcCCc
Confidence            221          1 2267777777766 34544    246677888888887753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.14  E-value=9.7e-12  Score=121.24  Aligned_cols=14  Identities=43%  Similarity=0.740  Sum_probs=11.4

Q ss_pred             cCCCcCEEeecCCC
Q 012933          317 SFPRLRWLELSGLH  330 (453)
Q Consensus       317 ~l~~L~~L~l~~~~  330 (453)
                      .+|+|++|++++|+
T Consensus       301 ~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          301 KMPDLLFLELNGNR  314 (386)
T ss_dssp             HCTTCCEEECTTSB
T ss_pred             cCCCceEEEccCCc
Confidence            47899999998883

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.13  E-value=1.1e-10  Score=119.94  Aligned_cols=175  Identities=18%  Similarity=0.211  Sum_probs=100.9

Q ss_pred             hcccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCC
Q 012933           18 FAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPN   97 (453)
Q Consensus        18 ~~~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~   97 (453)
                      ....+...+++|+.|++++| .+..++. +..        +++|+.|+++++ .++.++.   ...+++|+.|++++| .
T Consensus        34 ~~~~~~~~L~~L~~L~l~~n-~i~~l~~-l~~--------l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~   98 (605)
T 1m9s_A           34 TDAVTQNELNSIDQIIANNS-DIKSVQG-IQY--------LPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-K   98 (605)
T ss_dssp             TSEECHHHHTTCCCCBCTTC-CCCCCTT-GGG--------CTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-C
T ss_pred             ccccchhcCCCCCEEECcCC-CCCCChH-Hcc--------CCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-C
Confidence            34445566777777777776 4665542 333        777777777773 3444433   456777777777776 3


Q ss_pred             ccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCC
Q 012933           98 MKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNL  177 (453)
Q Consensus        98 l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L  177 (453)
                      +..++ .+..+++|+.|+++++.-               ..+ ..+..+++|+.|+++++. +..++.   +  ..+++|
T Consensus        99 l~~l~-~l~~l~~L~~L~Ls~N~l---------------~~l-~~l~~l~~L~~L~Ls~N~-l~~l~~---l--~~l~~L  155 (605)
T 1m9s_A           99 IKDLS-SLKDLKKLKSLSLEHNGI---------------SDI-NGLVHLPQLESLYLGNNK-ITDITV---L--SRLTKL  155 (605)
T ss_dssp             CCCCT-TSTTCTTCCEEECTTSCC---------------CCC-GGGGGCTTCSEEECCSSC-CCCCGG---G--GSCTTC
T ss_pred             CCCCh-hhccCCCCCEEEecCCCC---------------CCC-ccccCCCccCEEECCCCc-cCCchh---h--cccCCC
Confidence            55554 456677777777775421               111 224456777777777665 333311   1  346677


Q ss_pred             cEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCC
Q 012933          178 ARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP  246 (453)
Q Consensus       178 ~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  246 (453)
                      ++|++++|. +.+..+   +..+++|+.|++++| .+.+++..          . .+++|+.|+|.+++
T Consensus       156 ~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~i~~l~~l----------~-~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          156 DTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKN-HISDLRAL----------A-GLKNLDVLELFSQE  208 (605)
T ss_dssp             SEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCBCGGG----------T-TCTTCSEEECCSEE
T ss_pred             CEEECcCCc-CCCchh---hccCCCCCEEECcCC-CCCCChHH----------c-cCCCCCEEEccCCc
Confidence            777777653 444323   566677777777665 33333211          1 12666676666553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.12  E-value=2.7e-10  Score=117.01  Aligned_cols=175  Identities=17%  Similarity=0.194  Sum_probs=125.2

Q ss_pred             CccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCccee
Q 012933          172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF  251 (453)
Q Consensus       172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~  251 (453)
                      ..+++|++|+++++. +... +  .+..+++|+.|+++++ .+..++...           .+++|++|.|.++. ++.+
T Consensus        40 ~~L~~L~~L~l~~n~-i~~l-~--~l~~l~~L~~L~Ls~N-~l~~~~~l~-----------~l~~L~~L~Ls~N~-l~~l  102 (605)
T 1m9s_A           40 NELNSIDQIIANNSD-IKSV-Q--GIQYLPNVTKLFLNGN-KLTDIKPLT-----------NLKNLGWLFLDENK-IKDL  102 (605)
T ss_dssp             HHHTTCCCCBCTTCC-CCCC-T--TGGGCTTCCEEECTTS-CCCCCGGGG-----------GCTTCCEEECCSSC-CCCC
T ss_pred             hcCCCCCEEECcCCC-CCCC-h--HHccCCCCCEEEeeCC-CCCCChhhc-----------cCCCCCEEECcCCC-CCCC
Confidence            458899999999875 4444 2  3788999999999986 344443211           23889999998874 5553


Q ss_pred             ccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCC
Q 012933          252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK  331 (453)
Q Consensus       252 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~  331 (453)
                          ..+..+++|+.|++++|. +..++  .  +..+++|+.|+++++.--.        ++.+..+++|+.|++++| .
T Consensus       103 ----~~l~~l~~L~~L~Ls~N~-l~~l~--~--l~~l~~L~~L~Ls~N~l~~--------l~~l~~l~~L~~L~Ls~N-~  164 (605)
T 1m9s_A          103 ----SSLKDLKKLKSLSLEHNG-ISDIN--G--LVHLPQLESLYLGNNKITD--------ITVLSRLTKLDTLSLEDN-Q  164 (605)
T ss_dssp             ----TTSTTCTTCCEEECTTSC-CCCCG--G--GGGCTTCSEEECCSSCCCC--------CGGGGSCTTCSEEECCSS-C
T ss_pred             ----hhhccCCCCCEEEecCCC-CCCCc--c--ccCCCccCEEECCCCccCC--------chhhcccCCCCEEECcCC-c
Confidence                367889999999998875 44432  2  6677889999998873221        134567889999999888 5


Q ss_pred             cceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccC
Q 012933          332 VQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLT  389 (453)
Q Consensus       332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~  389 (453)
                      +..++.  +   ..+++|+.|++++| .++.++ .+..+++|+.|+++++ .+...|.
T Consensus       165 l~~~~~--l---~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p~  214 (605)
T 1m9s_A          165 ISDIVP--L---AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQ-ECLNKPI  214 (605)
T ss_dssp             CCCCGG--G---TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred             CCCchh--h---ccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCC-cCcCCcc
Confidence            666654  3   78889999999985 577764 4677889999999774 4555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.10  E-value=4.7e-12  Score=122.42  Aligned_cols=253  Identities=11%  Similarity=-0.051  Sum_probs=131.7

Q ss_pred             HHHHhhcCCCCccEEEEeeCCCCcccccCCCC--CcCccC-CCcEEEecCCCCccccCchhHHhhc-----CCCcEEEec
Q 012933          138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQAL--PVSFFN-NLARLVVDDCTNMSSAIPANLLRCL-----NNLQWLEVR  209 (453)
Q Consensus       138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l--~~~~l~-~L~~L~l~~c~~l~~~~~~~~l~~l-----~~L~~L~l~  209 (453)
                      .++......++|++|+++++. +....... +  ....++ +|++|++++| .++...+ ..+..+     ++|++|+++
T Consensus        13 ~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~-l~~~l~~~~~~L~~L~Ls~N-~l~~~~~-~~l~~~l~~~~~~L~~L~Ls   88 (362)
T 3goz_A           13 PVEEFTSIPHGVTSLDLSLNN-LYSISTVE-LIQAFANTPASVTSLNLSGN-SLGFKNS-DELVQILAAIPANVTSLNLS   88 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSC-GGGSCHHH-HHHHHHTCCTTCCEEECCSS-CGGGSCH-HHHHHHHHTSCTTCCEEECC
T ss_pred             HHHHHHhCCCCceEEEccCCC-CChHHHHH-HHHHHHhCCCceeEEECcCC-CCCHHHH-HHHHHHHhccCCCccEEECc
Confidence            344444445669999999887 54433200 0  012356 8999999987 4554423 335554     889999998


Q ss_pred             cCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc--CCCcccC-CCCccEEeeecCCCCceeccCC--cc
Q 012933          210 NCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN--FTGNIIE-LPELQHLTIQNCPDMETFISNS--VV  284 (453)
Q Consensus       210 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~~~~-l~~L~~L~l~~c~~l~~~~~~~--~~  284 (453)
                      +|. +.+.....-...+    ....++|++|++.++. ++....  ....+.. .++|+.|++++|. +++.....  ..
T Consensus        89 ~n~-l~~~~~~~l~~~l----~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~  161 (362)
T 3goz_A           89 GNF-LSYKSSDELVKTL----AAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI  161 (362)
T ss_dssp             SSC-GGGSCHHHHHHHH----HTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH
T ss_pred             CCc-CChHHHHHHHHHH----HhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH
Confidence            874 4432211000000    0111678999998875 443210  0011333 3589999998864 33211110  00


Q ss_pred             cccCC-Cccccccccccccccccccccccc-ccccC-CCcCEEeecCCCCcceecccCCc-cccc-CCCccceeeccCCC
Q 012933          285 HVTTD-NKEPQKLTSEENFLLAHQVQPLFD-EKVSF-PRLRWLELSGLHKVQHLWKENDE-SNKA-FANLESLEISECSK  359 (453)
Q Consensus       285 ~~~l~-~L~~L~l~~~~~~~~~~~l~~~~~-~~~~l-~~L~~L~l~~~~~l~~l~~~~~~-~~~~-l~~L~~L~l~~c~~  359 (453)
                      +...+ +|+.|++++|.--..+   ...+. .+... ++|++|++++| .+++.....++ .... .++|++|++++| .
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~---~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~  236 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKN---CAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-C  236 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSC---HHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-C
T ss_pred             HhcCCccccEeeecCCCCchhh---HHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-C
Confidence            22233 7888888876321100   00000 12234 47888888887 45552211110 0022 357888888884 4


Q ss_pred             ccccCC-----CCCCCCCCCEEecccCc-------ccccccCCCcccccCCcceEEEcccc
Q 012933          360 LQKLVP-----PSWHLENLEALEVSKCH-------GLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       360 l~~l~~-----~~~~l~~L~~L~l~~c~-------~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                      +++.+.     .+..+++|++|++++|.       .+..++.  ....+++|++|++++.+
T Consensus       237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~--~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA--AFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT--TSTTCCEEEEECTTSCB
T ss_pred             CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHH--HhccCCceEEEecCCCc
Confidence            544332     34566778888887753       1222221  23355677777777665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.06  E-value=8.2e-10  Score=100.79  Aligned_cols=175  Identities=15%  Similarity=0.156  Sum_probs=99.0

Q ss_pred             cccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc-Cc
Q 012933           27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GI  105 (453)
Q Consensus        27 ~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~  105 (453)
                      .+.+++++++. .++.+|..+.          ++++.|++++ ..++.+... ....+++|++|+++++. ++.++. .+
T Consensus        14 ~~~~~l~~~~~-~l~~~p~~~~----------~~l~~L~L~~-n~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~   79 (251)
T 3m19_A           14 EGKKEVDCQGK-SLDSVPSGIP----------ADTEKLDLQS-TGLATLSDA-TFRGLTKLTWLNLDYNQ-LQTLSAGVF   79 (251)
T ss_dssp             GGGTEEECTTC-CCSSCCSCCC----------TTCCEEECTT-SCCCCCCTT-TTTTCTTCCEEECTTSC-CCCCCTTTT
T ss_pred             CCCeEEecCCC-CccccCCCCC----------CCCCEEEccC-CCcCccCHh-HhcCcccCCEEECCCCc-CCccCHhHh
Confidence            34566777764 5666665422          3677777776 334444332 24456777777777753 444433 34


Q ss_pred             cCCCCcceEEeccccccccccccCCccchhHHHHH-HhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecC
Q 012933          106 LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDD  184 (453)
Q Consensus       106 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~  184 (453)
                      ..+++|++|+++++.               +..++ ..+..+++|++|+++++. +..++... +  ..+++|++|++++
T Consensus        80 ~~l~~L~~L~L~~n~---------------l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~--~~l~~L~~L~Ls~  140 (251)
T 3m19_A           80 DDLTELGTLGLANNQ---------------LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGV-F--DRLTKLKELRLNT  140 (251)
T ss_dssp             TTCTTCCEEECTTSC---------------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECCS
T ss_pred             ccCCcCCEEECCCCc---------------ccccChhHhcccCCCCEEEcCCCc-CCCcChhH-h--ccCCcccEEECcC
Confidence            557777777777532               11111 223456777777777764 44443322 2  3467788888877


Q ss_pred             CCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCC
Q 012933          185 CTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP  246 (453)
Q Consensus       185 c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  246 (453)
                      + .++.. +...+..+++|+.|+++++ .+..++..        ... .+++|++|++.+++
T Consensus       141 N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~--------~~~-~l~~L~~L~l~~N~  190 (251)
T 3m19_A          141 N-QLQSI-PAGAFDKLTNLQTLSLSTN-QLQSVPHG--------AFD-RLGKLQTITLFGNQ  190 (251)
T ss_dssp             S-CCCCC-CTTTTTTCTTCCEEECCSS-CCSCCCTT--------TTT-TCTTCCEEECCSCC
T ss_pred             C-cCCcc-CHHHcCcCcCCCEEECCCC-cCCccCHH--------HHh-CCCCCCEEEeeCCc
Confidence            5 45544 3344667778888888775 34333220        111 22677788777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.99  E-value=8.7e-11  Score=113.46  Aligned_cols=66  Identities=9%  Similarity=0.005  Sum_probs=43.5

Q ss_pred             CCcCEEeecCCCCcceecccCCc-ccccCCCccceeeccCC-------CccccCCCCCCCCCCCEEecccCccccc
Q 012933          319 PRLRWLELSGLHKVQHLWKENDE-SNKAFANLESLEISECS-------KLQKLVPPSWHLENLEALEVSKCHGLIN  386 (453)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~-~~~~l~~L~~L~l~~c~-------~l~~l~~~~~~l~~L~~L~l~~c~~l~~  386 (453)
                      ++|++|++++| .+++.+...+. ....+++|+.|++++|.       .+..++..+..+++|+.|++++ +.+.+
T Consensus       225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~-N~l~~  298 (362)
T 3goz_A          225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG-KEIHP  298 (362)
T ss_dssp             TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS-CBCCG
T ss_pred             CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC-CcCCC
Confidence            58888888888 56655432111 11577889999998864       1334555666788888999977 44554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.99  E-value=1.1e-09  Score=100.82  Aligned_cols=173  Identities=17%  Similarity=0.201  Sum_probs=100.1

Q ss_pred             cccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCc
Q 012933           19 AYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNM   98 (453)
Q Consensus        19 ~~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l   98 (453)
                      .+++...+.+++.++++++ .++.++ .+..        +++|++|+++++ .++.++   ....+++|++|++++| ++
T Consensus        11 ~~~pd~~l~~l~~l~l~~~-~i~~~~-~~~~--------l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~N-~i   75 (263)
T 1xeu_A           11 QVFPDPGLANAVKQNLGKQ-SVTDLV-SQKE--------LSGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSHN-QI   75 (263)
T ss_dssp             HHCCSHHHHHHHHHHHTCS-CTTSEE-CHHH--------HTTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CC
T ss_pred             HhCCCHHHHHHHHHHhcCC-Cccccc-chhh--------cCcCcEEECcCC-Ccccch---HHhhCCCCCEEECCCC-cc
Confidence            3455555666666666664 455554 2233        667777777764 455443   2456677777777775 35


Q ss_pred             cccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCc
Q 012933           99 KTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA  178 (453)
Q Consensus        99 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~  178 (453)
                      +.++. +..+++|++|+++++.               +..++. ... ++|++|+++++. +..++.   +  ..+++|+
T Consensus        76 ~~~~~-l~~l~~L~~L~L~~N~---------------l~~l~~-~~~-~~L~~L~L~~N~-l~~~~~---l--~~l~~L~  131 (263)
T 1xeu_A           76 SDLSP-LKDLTKLEELSVNRNR---------------LKNLNG-IPS-ACLSRLFLDNNE-LRDTDS---L--IHLKNLE  131 (263)
T ss_dssp             CCCGG-GTTCSSCCEEECCSSC---------------CSCCTT-CCC-SSCCEEECCSSC-CSBSGG---G--TTCTTCC
T ss_pred             CCChh-hccCCCCCEEECCCCc---------------cCCcCc-ccc-CcccEEEccCCc-cCCChh---h--cCccccc
Confidence            55554 5667777777777542               111111 111 677777777765 444321   1  3477888


Q ss_pred             EEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCC
Q 012933          179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP  246 (453)
Q Consensus       179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  246 (453)
                      +|+++++. +++. +  .+..+++|+.|+++++ .+.++.          ... .+++|++|++.+++
T Consensus       132 ~L~Ls~N~-i~~~-~--~l~~l~~L~~L~L~~N-~i~~~~----------~l~-~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          132 ILSIRNNK-LKSI-V--MLGFLSKLEVLDLHGN-EITNTG----------GLT-RLKKVNWIDLTGQK  183 (263)
T ss_dssp             EEECTTSC-CCBC-G--GGGGCTTCCEEECTTS-CCCBCT----------TST-TCCCCCEEEEEEEE
T ss_pred             EEECCCCc-CCCC-h--HHccCCCCCEEECCCC-cCcchH----------Hhc-cCCCCCEEeCCCCc
Confidence            88888753 4443 2  3667788888888775 333331          111 22778888887654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.99  E-value=3.9e-09  Score=93.24  Aligned_cols=131  Identities=16%  Similarity=0.113  Sum_probs=67.9

Q ss_pred             CCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccc
Q 012933          233 LFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLF  312 (453)
Q Consensus       233 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~  312 (453)
                      .+++|++|++.++. ++.+  .+..+..+++|+.|+++++ .++.++...  +..+++|+.|+++++.--.+.      .
T Consensus        26 ~~~~l~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~------~   93 (208)
T 2o6s_A           26 IPAQTTYLDLETNS-LKSL--PNGVFDELTSLTQLYLGGN-KLQSLPNGV--FNKLTSLTYLNLSTNQLQSLP------N   93 (208)
T ss_dssp             CCTTCSEEECCSSC-CCCC--CTTTTTTCTTCSEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSSCCCCCC------T
T ss_pred             CCCCCcEEEcCCCc-cCcC--ChhhhcccccCcEEECCCC-ccCccChhh--cCCCCCcCEEECCCCcCCccC------H
Confidence            34678888887763 4443  2234667788888888775 344444332  444555555555554211100      0


Q ss_pred             cccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEeccc
Q 012933          313 DEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSK  380 (453)
Q Consensus       313 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~  380 (453)
                      ..+..+++|++|+++++ .++.++...+   ..+++|+.|++++ +.++.++.. +..+++|++|++++
T Consensus        94 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~  157 (208)
T 2o6s_A           94 GVFDKLTQLKELALNTN-QLQSLPDGVF---DKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHD  157 (208)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             hHhcCccCCCEEEcCCC-cCcccCHhHh---ccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecC
Confidence            11234455555555555 4444444433   4555555555555 234444443 34455555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.97  E-value=3.2e-09  Score=95.46  Aligned_cols=85  Identities=19%  Similarity=0.166  Sum_probs=60.0

Q ss_pred             ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccc
Q 012933          316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSES  395 (453)
Q Consensus       316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~  395 (453)
                      ..+++|++|+++++ .++.++...|   ..+++|+.|++++ +.++.+|..+..+++|++|++++ ++++.++. .....
T Consensus        85 ~~l~~L~~L~Ls~N-~l~~l~~~~~---~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~  157 (229)
T 3e6j_A           85 DSLTQLTVLDLGTN-QLTVLPSAVF---DRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQ-NQLKSIPH-GAFDR  157 (229)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCS-SCCCCCCT-TTTTT
T ss_pred             ccCCCcCEEECCCC-cCCccChhHh---CcchhhCeEeccC-CcccccCcccccCCCCCEEECCC-CcCCccCH-HHHhC
Confidence            35677777777777 6677766665   6777888888877 56777777777778888888866 56776655 24456


Q ss_pred             cCCcceEEEccc
Q 012933          396 LVNLGRMMIADC  407 (453)
Q Consensus       396 l~~L~~L~i~~C  407 (453)
                      +++|++|++.+.
T Consensus       158 l~~L~~L~l~~N  169 (229)
T 3e6j_A          158 LSSLTHAYLFGN  169 (229)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEEeeCC
Confidence            777888877653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.97  E-value=3.1e-09  Score=102.42  Aligned_cols=155  Identities=17%  Similarity=0.111  Sum_probs=94.2

Q ss_pred             CccceeeeccCCCcceeccCCCccc-CCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccccccccc
Q 012933          235 PKLYGLRLIDLPKLKRFCNFTGNII-ELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFD  313 (453)
Q Consensus       235 ~~L~~L~L~~~~~l~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~  313 (453)
                      +.++.|+|++. .++.++  +..+. .+++|+.|+++++ .+..++...  +..+++|+.|+++++.--.+.      ..
T Consensus        39 ~~l~~L~Ls~N-~l~~l~--~~~~~~~l~~L~~L~L~~N-~i~~i~~~~--~~~l~~L~~L~Ls~N~l~~~~------~~  106 (361)
T 2xot_A           39 SYTALLDLSHN-NLSRLR--AEWTPTRLTNLHSLLLSHN-HLNFISSEA--FVPVPNLRYLDLSSNHLHTLD------EF  106 (361)
T ss_dssp             TTCSEEECCSS-CCCEEC--TTSSSSCCTTCCEEECCSS-CCCEECTTT--TTTCTTCCEEECCSSCCCEEC------TT
T ss_pred             CCCCEEECCCC-CCCccC--hhhhhhcccccCEEECCCC-cCCccChhh--ccCCCCCCEEECCCCcCCcCC------HH
Confidence            34555555543 244431  22333 5566666666553 344444333  555556666666654211100      01


Q ss_pred             ccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCC----CCCCCCCEEecccCcccccccC
Q 012933          314 EKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPS----WHLENLEALEVSKCHGLINLLT  389 (453)
Q Consensus       314 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~l~~c~~l~~l~~  389 (453)
                      .+..+++|++|+++++ .++.+....|   ..+++|+.|++++ +.++.+|...    ..+++|++|++++ ++++.++.
T Consensus       107 ~~~~l~~L~~L~L~~N-~i~~~~~~~~---~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~  180 (361)
T 2xot_A          107 LFSDLQALEVLLLYNN-HIVVVDRNAF---EDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPL  180 (361)
T ss_dssp             TTTTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCH
T ss_pred             HhCCCcCCCEEECCCC-cccEECHHHh---CCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCH
Confidence            2346788889999888 6788777777   7889999999998 5788887653    5689999999977 67887764


Q ss_pred             CCcccccCC--cceEEEcccc
Q 012933          390 FSTSESLVN--LGRMMIADCK  408 (453)
Q Consensus       390 ~~~~~~l~~--L~~L~i~~C~  408 (453)
                      . ....++.  ++.|++.+.+
T Consensus       181 ~-~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          181 T-DLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             H-HHHHSCHHHHTTEECCSSC
T ss_pred             H-HhhhccHhhcceEEecCCC
Confidence            2 3344555  4778887633

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.95  E-value=9.3e-09  Score=104.61  Aligned_cols=180  Identities=13%  Similarity=0.094  Sum_probs=107.1

Q ss_pred             CCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccc
Q 012933          147 RDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNAD  226 (453)
Q Consensus       147 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  226 (453)
                      .+++.|+++++. +..++...      +++|++|+++++. ++.+ |    ..+++|+.|+++++ .++.++.       
T Consensus        59 ~~L~~L~Ls~n~-L~~lp~~l------~~~L~~L~Ls~N~-l~~i-p----~~l~~L~~L~Ls~N-~l~~ip~-------  117 (571)
T 3cvr_A           59 NQFSELQLNRLN-LSSLPDNL------PPQITVLEITQNA-LISL-P----ELPASLEYLDACDN-RLSTLPE-------  117 (571)
T ss_dssp             TTCSEEECCSSC-CSCCCSCC------CTTCSEEECCSSC-CSCC-C----CCCTTCCEEECCSS-CCSCCCC-------
T ss_pred             CCccEEEeCCCC-CCccCHhH------cCCCCEEECcCCC-Cccc-c----cccCCCCEEEccCC-CCCCcch-------
Confidence            477888887765 55444332      5778888888763 5443 3    34678888888775 3444321       


Q ss_pred             cCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccc
Q 012933          227 KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAH  306 (453)
Q Consensus       227 ~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  306 (453)
                            ...+|++|++.++. ++.++   .   .+++|+.|+++++. ++.+|.      .+++|+.|+++++.--.   
T Consensus       118 ------l~~~L~~L~Ls~N~-l~~lp---~---~l~~L~~L~Ls~N~-l~~lp~------~l~~L~~L~Ls~N~L~~---  174 (571)
T 3cvr_A          118 ------LPASLKHLDVDNNQ-LTMLP---E---LPALLEYINADNNQ-LTMLPE------LPTSLEVLSVRNNQLTF---  174 (571)
T ss_dssp             ------CCTTCCEEECCSSC-CSCCC---C---CCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSSCCSC---
T ss_pred             ------hhcCCCEEECCCCc-CCCCC---C---cCccccEEeCCCCc-cCcCCC------cCCCcCEEECCCCCCCC---
Confidence                  11378888887753 44442   2   57788888887754 444433      23467777777653111   


Q ss_pred             cccccccccccCCCcCEEeecCCCCcceecccCCcc--cccCCCccceeeccCCCccccCCCCCCCCCCCEEecccC
Q 012933          307 QVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDES--NKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKC  381 (453)
Q Consensus       307 ~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~--~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  381 (453)
                           ++.+.  ++|++|++++| .++.++.  ++.  ....+.|+.|++++ +.++.+|..+..+++|+.|+++++
T Consensus       175 -----lp~l~--~~L~~L~Ls~N-~L~~lp~--~~~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          175 -----LPELP--ESLEALDVSTN-LLESLPA--VPVRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             -----CCCCC--TTCCEEECCSS-CCSSCCC--CC--------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSS
T ss_pred             -----cchhh--CCCCEEECcCC-CCCchhh--HHHhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCC
Confidence                 11211  67788888777 5666665  210  00112227778877 467777776666778888888764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.94  E-value=3.7e-09  Score=107.52  Aligned_cols=182  Identities=16%  Similarity=0.199  Sum_probs=99.6

Q ss_pred             ccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccC
Q 012933           28 SLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILS  107 (453)
Q Consensus        28 ~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  107 (453)
                      +++.|+++++ .++.+|..+          +++|++|++++ +.++.++     ..+++|+.|++++| +++.+|. +..
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~l----------~~~L~~L~Ls~-N~l~~ip-----~~l~~L~~L~Ls~N-~l~~ip~-l~~  120 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDNL----------PPQITVLEITQ-NALISLP-----ELPASLEYLDACDN-RLSTLPE-LPA  120 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSCC----------CTTCSEEECCS-SCCSCCC-----CCCTTCCEEECCSS-CCSCCCC-CCT
T ss_pred             CccEEEeCCC-CCCccCHhH----------cCCCCEEECcC-CCCcccc-----cccCCCCEEEccCC-CCCCcch-hhc
Confidence            6777888776 466666532          35677777777 3455554     24677778887776 4666665 333


Q ss_pred             CCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCC
Q 012933          108 TPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTN  187 (453)
Q Consensus       108 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~  187 (453)
                        +|++|+++++.               +..++.   .+++|++|+++++. +..++.       .+++|++|+++++. 
T Consensus       121 --~L~~L~Ls~N~---------------l~~lp~---~l~~L~~L~Ls~N~-l~~lp~-------~l~~L~~L~Ls~N~-  171 (571)
T 3cvr_A          121 --SLKHLDVDNNQ---------------LTMLPE---LPALLEYINADNNQ-LTMLPE-------LPTSLEVLSVRNNQ-  171 (571)
T ss_dssp             --TCCEEECCSSC---------------CSCCCC---CCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSSC-
T ss_pred             --CCCEEECCCCc---------------CCCCCC---cCccccEEeCCCCc-cCcCCC-------cCCCcCEEECCCCC-
Confidence              77777777531               112222   35677777777765 433332       25677777777653 


Q ss_pred             ccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEE
Q 012933          188 MSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHL  267 (453)
Q Consensus       188 l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L  267 (453)
                      ++.+ |.  +.  ++|+.|+++++ .++.++....     .... ..+.|++|++.++ .++.+   +..+..+++|+.|
T Consensus       172 L~~l-p~--l~--~~L~~L~Ls~N-~L~~lp~~~~-----~L~~-~~~~L~~L~Ls~N-~l~~l---p~~l~~l~~L~~L  235 (571)
T 3cvr_A          172 LTFL-PE--LP--ESLEALDVSTN-LLESLPAVPV-----RNHH-SEETEIFFRCREN-RITHI---PENILSLDPTCTI  235 (571)
T ss_dssp             CSCC-CC--CC--TTCCEEECCSS-CCSSCCCCC--------------CCEEEECCSS-CCCCC---CGGGGGSCTTEEE
T ss_pred             CCCc-ch--hh--CCCCEEECcCC-CCCchhhHHH-----hhhc-ccccceEEecCCC-cceec---CHHHhcCCCCCEE
Confidence            4443 32  22  67777777764 3444322000     0000 0022266666654 24433   3445556666666


Q ss_pred             eeecCC
Q 012933          268 TIQNCP  273 (453)
Q Consensus       268 ~l~~c~  273 (453)
                      ++++++
T Consensus       236 ~L~~N~  241 (571)
T 3cvr_A          236 ILEDNP  241 (571)
T ss_dssp             ECCSSS
T ss_pred             EeeCCc
Confidence            666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.91  E-value=6.7e-09  Score=95.40  Aligned_cols=172  Identities=13%  Similarity=0.178  Sum_probs=121.8

Q ss_pred             ccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceec
Q 012933          173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC  252 (453)
Q Consensus       173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~  252 (453)
                      .+.+++.+.++++ .+++..   .+..+++|+.|+++++ .+.+++...           .+++|++|++.++. ++.++
T Consensus        17 ~l~~l~~l~l~~~-~i~~~~---~~~~l~~L~~L~l~~n-~i~~l~~l~-----------~l~~L~~L~L~~N~-i~~~~   79 (263)
T 1xeu_A           17 GLANAVKQNLGKQ-SVTDLV---SQKELSGVQNFNGDNS-NIQSLAGMQ-----------FFTNLKELHLSHNQ-ISDLS   79 (263)
T ss_dssp             HHHHHHHHHHTCS-CTTSEE---CHHHHTTCSEEECTTS-CCCCCTTGG-----------GCTTCCEEECCSSC-CCCCG
T ss_pred             HHHHHHHHHhcCC-Cccccc---chhhcCcCcEEECcCC-CcccchHHh-----------hCCCCCEEECCCCc-cCCCh
Confidence            4566777777764 344442   3778999999999997 566553211           23899999998874 65542


Q ss_pred             cCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCc
Q 012933          253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV  332 (453)
Q Consensus       253 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l  332 (453)
                          .+..+++|+.|+++++. ++.++...    . ++|+.|+++++.--.        ++.+..+++|++|+++++ .+
T Consensus        80 ----~l~~l~~L~~L~L~~N~-l~~l~~~~----~-~~L~~L~L~~N~l~~--------~~~l~~l~~L~~L~Ls~N-~i  140 (263)
T 1xeu_A           80 ----PLKDLTKLEELSVNRNR-LKNLNGIP----S-ACLSRLFLDNNELRD--------TDSLIHLKNLEILSIRNN-KL  140 (263)
T ss_dssp             ----GGTTCSSCCEEECCSSC-CSCCTTCC----C-SSCCEEECCSSCCSB--------SGGGTTCTTCCEEECTTS-CC
T ss_pred             ----hhccCCCCCEEECCCCc-cCCcCccc----c-CcccEEEccCCccCC--------ChhhcCcccccEEECCCC-cC
Confidence                28889999999999864 55554332    2 689999998873221        234567889999999998 57


Q ss_pred             ceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCccccccc
Q 012933          333 QHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLL  388 (453)
Q Consensus       333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~  388 (453)
                      ++++  .+   ..+++|+.|++++ +.++.+ ..+..+++|+.|++++ +.+...+
T Consensus       141 ~~~~--~l---~~l~~L~~L~L~~-N~i~~~-~~l~~l~~L~~L~l~~-N~~~~~~  188 (263)
T 1xeu_A          141 KSIV--ML---GFLSKLEVLDLHG-NEITNT-GGLTRLKKVNWIDLTG-QKCVNEP  188 (263)
T ss_dssp             CBCG--GG---GGCTTCCEEECTT-SCCCBC-TTSTTCCCCCEEEEEE-EEEECCC
T ss_pred             CCCh--HH---ccCCCCCEEECCC-CcCcch-HHhccCCCCCEEeCCC-CcccCCc
Confidence            7764  23   7889999999998 467766 5677889999999977 4455543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.91  E-value=1.7e-08  Score=89.07  Aligned_cols=123  Identities=13%  Similarity=0.052  Sum_probs=64.1

Q ss_pred             CccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccc
Q 012933          235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDE  314 (453)
Q Consensus       235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~  314 (453)
                      ++|++|++.++ .++.+  .+..+..+++|+.|+++++. ++.++...  +..+++|+.|+++++.--.+.      ...
T Consensus        52 ~~L~~L~l~~n-~l~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~------~~~  119 (208)
T 2o6s_A           52 TSLTQLYLGGN-KLQSL--PNGVFNKLTSLTYLNLSTNQ-LQSLPNGV--FDKLTQLKELALNTNQLQSLP------DGV  119 (208)
T ss_dssp             TTCSEEECCSS-CCCCC--CTTTTTTCTTCCEEECCSSC-CCCCCTTT--TTTCTTCCEEECCSSCCCCCC------TTT
T ss_pred             ccCcEEECCCC-ccCcc--ChhhcCCCCCcCEEECCCCc-CCccCHhH--hcCccCCCEEEcCCCcCcccC------HhH
Confidence            56666666654 23332  12334566666666666643 33443332  455666666666655221100      011


Q ss_pred             cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933          315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK  380 (453)
Q Consensus       315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  380 (453)
                      +..+++|++|+++++ .++.++...+   ..+++|++|++++++-       ...+++|+.|.++.
T Consensus       120 ~~~l~~L~~L~l~~N-~l~~~~~~~~---~~l~~L~~L~l~~N~~-------~~~~~~l~~L~~~~  174 (208)
T 2o6s_A          120 FDKLTQLKDLRLYQN-QLKSVPDGVF---DRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWI  174 (208)
T ss_dssp             TTTCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSCCB-------CCCTTTTHHHHHHH
T ss_pred             hccCCcCCEEECCCC-ccceeCHHHh---ccCCCccEEEecCCCe-------ecCCCCHHHHHHHH
Confidence            345566666666666 4555555444   5666666666666421       12345566666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.90  E-value=1.2e-08  Score=91.02  Aligned_cols=129  Identities=20%  Similarity=0.221  Sum_probs=69.1

Q ss_pred             CccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccc
Q 012933          235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDE  314 (453)
Q Consensus       235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~  314 (453)
                      ++|++|++.+.. ++.++  +..+..+++|+.|+++++. +..+....  +.                            
T Consensus        32 ~~l~~L~l~~n~-i~~i~--~~~~~~l~~L~~L~Ls~N~-i~~~~~~~--~~----------------------------   77 (220)
T 2v9t_B           32 ETITEIRLEQNT-IKVIP--PGAFSPYKKLRRIDLSNNQ-ISELAPDA--FQ----------------------------   77 (220)
T ss_dssp             TTCCEEECCSSC-CCEEC--TTSSTTCTTCCEEECCSSC-CCEECTTT--TT----------------------------
T ss_pred             cCCCEEECCCCc-CCCcC--HhHhhCCCCCCEEECCCCc-CCCcCHHH--hh----------------------------
Confidence            567777776653 44442  2355667777777776643 33332221  33                            


Q ss_pred             cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEecccCcccccccCCCcc
Q 012933          315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTS  393 (453)
Q Consensus       315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~  393 (453)
                        .+++|++|+++++ .++.++...|   ..+++|+.|++++ +.++.++. .+..+++|++|++++ +.++.++.. ..
T Consensus        78 --~l~~L~~L~Ls~N-~l~~l~~~~f---~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~  148 (220)
T 2v9t_B           78 --GLRSLNSLVLYGN-KITELPKSLF---EGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKG-TF  148 (220)
T ss_dssp             --TCSSCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTT-TT
T ss_pred             --CCcCCCEEECCCC-cCCccCHhHc---cCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHH-HH
Confidence              4455555555555 4555555544   5556666666666 34444432 355556666666655 445555432 23


Q ss_pred             cccCCcceEEEcc
Q 012933          394 ESLVNLGRMMIAD  406 (453)
Q Consensus       394 ~~l~~L~~L~i~~  406 (453)
                      ..+++|++|++.+
T Consensus       149 ~~l~~L~~L~L~~  161 (220)
T 2v9t_B          149 SPLRAIQTMHLAQ  161 (220)
T ss_dssp             TTCTTCCEEECCS
T ss_pred             hCCCCCCEEEeCC
Confidence            3455666666654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.87  E-value=3.3e-08  Score=88.19  Aligned_cols=148  Identities=15%  Similarity=0.185  Sum_probs=98.0

Q ss_pred             cEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCc
Q 012933          178 ARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGN  257 (453)
Q Consensus       178 ~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~  257 (453)
                      +.++.++. +++.+ |.. +  .++++.|+++++ .+..++..        ... .+++|++|++.++. ++.+  .+..
T Consensus        14 ~~v~c~~~-~l~~i-P~~-l--~~~l~~L~l~~n-~i~~i~~~--------~~~-~l~~L~~L~Ls~N~-i~~~--~~~~   75 (220)
T 2v9t_B           14 NIVDCRGK-GLTEI-PTN-L--PETITEIRLEQN-TIKVIPPG--------AFS-PYKKLRRIDLSNNQ-ISEL--APDA   75 (220)
T ss_dssp             TEEECTTS-CCSSC-CSS-C--CTTCCEEECCSS-CCCEECTT--------SST-TCTTCCEEECCSSC-CCEE--CTTT
T ss_pred             CEEEcCCC-CcCcC-CCc-c--CcCCCEEECCCC-cCCCcCHh--------Hhh-CCCCCCEEECCCCc-CCCc--CHHH
Confidence            56677664 46655 433 2  368999999985 45554320        111 23899999998874 5554  3467


Q ss_pred             ccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecc
Q 012933          258 IIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWK  337 (453)
Q Consensus       258 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  337 (453)
                      +..+++|+.|+++++ .++.++...  +                              ..+++|++|+++++ .++.++.
T Consensus        76 ~~~l~~L~~L~Ls~N-~l~~l~~~~--f------------------------------~~l~~L~~L~L~~N-~l~~~~~  121 (220)
T 2v9t_B           76 FQGLRSLNSLVLYGN-KITELPKSL--F------------------------------EGLFSLQLLLLNAN-KINCLRV  121 (220)
T ss_dssp             TTTCSSCCEEECCSS-CCCCCCTTT--T------------------------------TTCTTCCEEECCSS-CCCCCCT
T ss_pred             hhCCcCCCEEECCCC-cCCccCHhH--c------------------------------cCCCCCCEEECCCC-CCCEeCH
Confidence            889999999999985 344444331  2                              24567777777776 5666666


Q ss_pred             cCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccC
Q 012933          338 ENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKC  381 (453)
Q Consensus       338 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c  381 (453)
                      ..|   ..+++|+.|++++ +.++.++.. +..+++|++|++++.
T Consensus       122 ~~~---~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          122 DAF---QDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             TTT---TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             HHc---CCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCC
Confidence            666   6777888888877 556666653 666778888888663

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.86  E-value=2.6e-08  Score=94.58  Aligned_cols=78  Identities=12%  Similarity=-0.002  Sum_probs=54.4

Q ss_pred             cCCCcCEEeecCCCCcceecccCCcccccCCCcc-ceeeccCCCccccCC-CCCCCCCCCEEecccCcccccccCCCccc
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLE-SLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSE  394 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~-~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~  394 (453)
                      .+++|+.+++.+.  ++.++...|   .++++|+ .+.+.+  .++.++. .+.++++|+++.+.+ ++++.++.. .+.
T Consensus       248 ~~~~L~~l~l~~n--i~~I~~~aF---~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~-aF~  318 (329)
T 3sb4_A          248 QKKYLLKIKLPHN--LKTIGQRVF---SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDE-LFG  318 (329)
T ss_dssp             TCTTCCEEECCTT--CCEECTTTT---TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTT-TTC
T ss_pred             CCCCCCEEECCcc--cceehHHHh---hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchh-hhc
Confidence            4567777777664  777777777   7777887 887777  5667765 466778888888754 567777653 455


Q ss_pred             ccCCcceEE
Q 012933          395 SLVNLGRMM  403 (453)
Q Consensus       395 ~l~~L~~L~  403 (453)
                      ++++|++++
T Consensus       319 ~~~~L~~ly  327 (329)
T 3sb4_A          319 NGVPSKLIY  327 (329)
T ss_dssp             TTCCCCEEE
T ss_pred             CCcchhhhc
Confidence            667777765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.84  E-value=4.5e-08  Score=87.25  Aligned_cols=130  Identities=15%  Similarity=0.135  Sum_probs=62.8

Q ss_pred             CccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccc
Q 012933          235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDE  314 (453)
Q Consensus       235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~  314 (453)
                      +.+++|++.+.. ++.+. ....+..+++|+.|+++++. ++.++...  +..+++|+.|+++++.--.+.      ...
T Consensus        32 ~~~~~L~L~~N~-l~~~~-~~~~~~~l~~L~~L~L~~N~-i~~i~~~~--~~~l~~L~~L~Ls~N~l~~~~------~~~  100 (220)
T 2v70_A           32 QYTAELRLNNNE-FTVLE-ATGIFKKLPQLRKINFSNNK-ITDIEEGA--FEGASGVNEILLTSNRLENVQ------HKM  100 (220)
T ss_dssp             TTCSEEECCSSC-CCEEC-CCCCGGGCTTCCEEECCSSC-CCEECTTT--TTTCTTCCEEECCSSCCCCCC------GGG
T ss_pred             CCCCEEEcCCCc-CCccC-chhhhccCCCCCEEECCCCc-CCEECHHH--hCCCCCCCEEECCCCccCccC------HhH
Confidence            445666665542 44431 12335667777777776643 44444332  444445555555443211100      011


Q ss_pred             cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCcccc-CCCCCCCCCCCEEeccc
Q 012933          315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSK  380 (453)
Q Consensus       315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~  380 (453)
                      +..+++|++|+++++ .++.+....|   ..+++|+.|++++ +.++.+ |..+..+++|++|++++
T Consensus       101 ~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A          101 FKGLESLKTLMLRSN-RITCVGNDSF---IGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             GTTCSSCCEEECTTS-CCCCBCTTSS---TTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             hcCCcCCCEEECCCC-cCCeECHhHc---CCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecC
Confidence            234455555555555 4555444444   4555555555555 344444 33445555555555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.83  E-value=3.4e-09  Score=90.20  Aligned_cols=56  Identities=14%  Similarity=0.170  Sum_probs=32.7

Q ss_pred             CccceeeeccCCCcc--eeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccc
Q 012933          235 PKLYGLRLIDLPKLK--RFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSE  299 (453)
Q Consensus       235 ~~L~~L~L~~~~~l~--~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~  299 (453)
                      ++|++|++.++. ++  .+   +..+..+++|+.|++++|. ++.+  ..  +..+++|+.|+++++
T Consensus        24 ~~L~~L~l~~n~-l~~~~i---~~~~~~l~~L~~L~l~~n~-l~~~--~~--~~~l~~L~~L~Ls~N   81 (168)
T 2ell_A           24 AAVRELVLDNCK-SNDGKI---EGLTAEFVNLEFLSLINVG-LISV--SN--LPKLPKLKKLELSEN   81 (168)
T ss_dssp             TSCSEEECCSCB-CBTTBC---SSCCGGGGGCCEEEEESSC-CCCC--SS--CCCCSSCCEEEEESC
T ss_pred             ccCCEEECCCCC-CChhhH---HHHHHhCCCCCEEeCcCCC-CCCh--hh--hccCCCCCEEECcCC
Confidence            678888888765 43  33   3446777888888887765 4333  11  334444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.83  E-value=2.4e-09  Score=91.16  Aligned_cols=63  Identities=21%  Similarity=0.285  Sum_probs=38.5

Q ss_pred             CCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCc--hhHHhhcCCCcEEEeccCc
Q 012933          146 FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIP--ANLLRCLNNLQWLEVRNCD  212 (453)
Q Consensus       146 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~--~~~l~~l~~L~~L~l~~~~  212 (453)
                      +++|++|+++++. +..++....+  ..+++|++|+++++. ++...+  ...+..+++|+.|+++++.
T Consensus        94 l~~L~~L~Ls~N~-l~~~~~~~~l--~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           94 LPNLTHLNLSGNK-LKDISTLEPL--KKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             CTTCCEEECBSSS-CCSSGGGGGG--SSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             CCCCCEEeccCCc-cCcchhHHHH--hcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence            5666666666664 4443211101  347888888888864 444422  1357788888888888864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.82  E-value=3e-08  Score=88.45  Aligned_cols=132  Identities=8%  Similarity=0.063  Sum_probs=102.0

Q ss_pred             CCCccEEeeecCCCCceec-cCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccC
Q 012933          261 LPELQHLTIQNCPDMETFI-SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEN  339 (453)
Q Consensus       261 l~~L~~L~l~~c~~l~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  339 (453)
                      .+.++.|+++++ .++.++ ...  +..+++|+.|+++++..-.+.      ...+..+++|++|+++++ .++.++...
T Consensus        31 ~~~~~~L~L~~N-~l~~~~~~~~--~~~l~~L~~L~L~~N~i~~i~------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~  100 (220)
T 2v70_A           31 PQYTAELRLNNN-EFTVLEATGI--FKKLPQLRKINFSNNKITDIE------EGAFEGASGVNEILLTSN-RLENVQHKM  100 (220)
T ss_dssp             CTTCSEEECCSS-CCCEECCCCC--GGGCTTCCEEECCSSCCCEEC------TTTTTTCTTCCEEECCSS-CCCCCCGGG
T ss_pred             CCCCCEEEcCCC-cCCccCchhh--hccCCCCCEEECCCCcCCEEC------HHHhCCCCCCCEEECCCC-ccCccCHhH
Confidence            346789999985 456553 333  678899999999987422211      123567899999999999 788888777


Q ss_pred             CcccccCCCccceeeccCCCcccc-CCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933          340 DESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       340 ~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                      |   ..+++|++|++++ +.++.+ |..+..+++|++|++++ +.++.++.. .+..+++|++|++++.+
T Consensus       101 ~---~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          101 F---KGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPG-AFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             G---TTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTT-TTTTCTTCCEEECCSCC
T ss_pred             h---cCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCC-CcCCEECHH-HhcCCCCCCEEEecCcC
Confidence            7   8999999999999 567777 45688899999999988 678887553 45678999999998655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.80  E-value=1.7e-08  Score=90.66  Aligned_cols=148  Identities=12%  Similarity=0.122  Sum_probs=80.4

Q ss_pred             cceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccC-ccC
Q 012933           29 LVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHG-ILS  107 (453)
Q Consensus        29 L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~  107 (453)
                      -+.++.++. .++.+|..+          .++|++|++++ ..++.+... ....+++|++|+++++. ++.++.. +..
T Consensus        21 ~~~v~c~~~-~l~~ip~~~----------~~~L~~L~Ls~-n~i~~~~~~-~~~~l~~L~~L~L~~N~-l~~i~~~~~~~   86 (229)
T 3e6j_A           21 GTTVDCRSK-RHASVPAGI----------PTNAQILYLHD-NQITKLEPG-VFDSLINLKELYLGSNQ-LGALPVGVFDS   86 (229)
T ss_dssp             TTEEECTTS-CCSSCCSCC----------CTTCSEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred             CCEeEccCC-CcCccCCCC----------CCCCCEEEcCC-CccCccCHH-HhhCccCCcEEECCCCC-CCCcChhhccc
Confidence            344555543 455555431          24566666665 334443222 13455666666666643 4544433 345


Q ss_pred             CCCcceEEeccccccccccccCCccchhHHHHHH-hhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCC
Q 012933          108 TPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE-EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT  186 (453)
Q Consensus       108 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~  186 (453)
                      +++|++|+++++.               +..++. ....+++|++|+++++. +..++...    ..+++|++|+++++ 
T Consensus        87 l~~L~~L~Ls~N~---------------l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~----~~l~~L~~L~L~~N-  145 (229)
T 3e6j_A           87 LTQLTVLDLGTNQ---------------LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGI----ERLTHLTHLALDQN-  145 (229)
T ss_dssp             CTTCCEEECCSSC---------------CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTG----GGCTTCSEEECCSS-
T ss_pred             CCCcCEEECCCCc---------------CCccChhHhCcchhhCeEeccCCc-ccccCccc----ccCCCCCEEECCCC-
Confidence            6666666666431               111111 22345677777776665 44544433    45677888888775 


Q ss_pred             CccccCchhHHhhcCCCcEEEeccCc
Q 012933          187 NMSSAIPANLLRCLNNLQWLEVRNCD  212 (453)
Q Consensus       187 ~l~~~~~~~~l~~l~~L~~L~l~~~~  212 (453)
                      .++.. +...+..+++|+.|++++++
T Consensus       146 ~l~~~-~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          146 QLKSI-PHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCCCC-CTTTTTTCTTCCEEECTTSC
T ss_pred             cCCcc-CHHHHhCCCCCCEEEeeCCC
Confidence            45544 33456777888888887753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.79  E-value=7.8e-09  Score=88.77  Aligned_cols=90  Identities=17%  Similarity=0.184  Sum_probs=65.8

Q ss_pred             cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC--CCCCCCCCCEEecccCcccccccCC--
Q 012933          315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP--PSWHLENLEALEVSKCHGLINLLTF--  390 (453)
Q Consensus       315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~~--  390 (453)
                      ++.+++|++|++++| .++.++...+   ..+++|++|++++ +.++++|.  .+..+++|++|++++ +.+..++..  
T Consensus        60 l~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~  133 (176)
T 1a9n_A           60 FPLLRRLKTLLVNNN-RICRIGEGLD---QALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRL  133 (176)
T ss_dssp             CCCCSSCCEEECCSS-CCCEECSCHH---HHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHH
T ss_pred             cccCCCCCEEECCCC-cccccCcchh---hcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHH
Confidence            346778888888887 6777776555   6788888888888 46777776  677888899999877 456665431  


Q ss_pred             CcccccCCcceEEEcccchh
Q 012933          391 STSESLVNLGRMMIADCKMI  410 (453)
Q Consensus       391 ~~~~~l~~L~~L~i~~C~~l  410 (453)
                      .....+++|++|+++++..-
T Consensus       134 ~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          134 YVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHHHHCTTCSEETTEECCHH
T ss_pred             HHHHHCCccceeCCCcCCHH
Confidence            02567788999988888744

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.78  E-value=1.6e-08  Score=97.37  Aligned_cols=129  Identities=16%  Similarity=0.215  Sum_probs=56.2

Q ss_pred             ccceeeccccccccccccccccccCCCcceEeecCCCCcccccc-CccCCCCcceEEeccccccccccccCCccchhHHH
Q 012933           60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQK  138 (453)
Q Consensus        60 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  138 (453)
                      .++.|++++ ++++.++.......+++|++|+++++ +++.++. .+..+++|++|+++++.               +..
T Consensus        40 ~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~---------------l~~  102 (361)
T 2xot_A           40 YTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH---------------LHT  102 (361)
T ss_dssp             TCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC---------------CCE
T ss_pred             CCCEEECCC-CCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc---------------CCc
Confidence            355555555 33444433321114555555555554 3443332 24445555555555321               111


Q ss_pred             HH-HhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHH---hhcCCCcEEEeccC
Q 012933          139 CY-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLL---RCLNNLQWLEVRNC  211 (453)
Q Consensus       139 ~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l---~~l~~L~~L~l~~~  211 (453)
                      ++ .....+++|++|+++++. +..+.... +  ..+++|++|+++++ .++.+ +...+   ..+++|+.|+++++
T Consensus       103 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~-~--~~l~~L~~L~L~~N-~l~~l-~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          103 LDEFLFSDLQALEVLLLYNNH-IVVVDRNA-F--EDMAQLQKLYLSQN-QISRF-PVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSC-CCEECTTT-T--TTCTTCCEEECCSS-CCCSC-CGGGTC----CTTCCEEECCSS
T ss_pred             CCHHHhCCCcCCCEEECCCCc-ccEECHHH-h--CCcccCCEEECCCC-cCCee-CHHHhcCcccCCcCCEEECCCC
Confidence            11 122334555555555554 33322211 1  23555666666554 23332 32323   34556666666553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.77  E-value=3.5e-09  Score=88.17  Aligned_cols=61  Identities=20%  Similarity=0.272  Sum_probs=38.4

Q ss_pred             cCCCCccEEEEeeCCCCcccc--cCCCCCcCccCCCcEEEecCCCCccccCc--hhHHhhcCCCcEEEecc
Q 012933          144 IGFRDMEYLQLSYFPHLKEIW--HGQALPVSFFNNLARLVVDDCTNMSSAIP--ANLLRCLNNLQWLEVRN  210 (453)
Q Consensus       144 ~~~~~L~~L~l~~~~~l~~~~--~~~~l~~~~l~~L~~L~l~~c~~l~~~~~--~~~l~~l~~L~~L~l~~  210 (453)
                      ..+++|++|+++++. +..++  ...    ..+++|++|+++++ .+++..+  ...+..+++|+.|++++
T Consensus        85 ~~l~~L~~L~ls~N~-i~~~~~~~~~----~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           85 EKCPNLTHLNLSGNK-IKDLSTIEPL----KKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHCTTCCEEECTTSC-CCSHHHHGGG----GGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             hhCCCCCEEECCCCc-CCChHHHHHH----hhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence            335666666666665 44332  211    45788899999887 3555433  14688889999987753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.77  E-value=3.8e-08  Score=93.51  Aligned_cols=106  Identities=13%  Similarity=0.079  Sum_probs=54.2

Q ss_pred             cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (453)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~  253 (453)
                      ..++..+.+.+.-  .......+...+++|+.+++.++ .++.++...        -..+ ++|+++.+.+.  ++.+  
T Consensus       201 ~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~a--------F~~~-~~L~~l~l~~n--i~~I--  264 (329)
T 3sb4_A          201 PRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISKT-NATTIPDFT--------FAQK-KYLLKIKLPHN--LKTI--  264 (329)
T ss_dssp             GGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTTB-CCCEECTTT--------TTTC-TTCCEEECCTT--CCEE--
T ss_pred             ccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCCC-CcceecHhh--------hhCC-CCCCEEECCcc--ccee--
Confidence            4455666665532  11111112233666777776653 244332200        0112 56666666552  5554  


Q ss_pred             CCCcccCCCCcc-EEeeecCCCCceeccCCcccccCCCccccccccc
Q 012933          254 FTGNIIELPELQ-HLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSE  299 (453)
Q Consensus       254 ~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~  299 (453)
                      ....+.++++|+ .+.+.+  .++.++...  +..+++|+.+++..+
T Consensus       265 ~~~aF~~~~~L~~~l~l~~--~l~~I~~~a--F~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          265 GQRVFSNCGRLAGTLELPA--SVTAIEFGA--FMGCDNLRYVLATGD  307 (329)
T ss_dssp             CTTTTTTCTTCCEEEEECT--TCCEECTTT--TTTCTTEEEEEECSS
T ss_pred             hHHHhhCChhccEEEEEcc--cceEEchhh--hhCCccCCEEEeCCC
Confidence            234566677777 777765  555555544  666667777766543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.76  E-value=3.9e-09  Score=87.91  Aligned_cols=126  Identities=25%  Similarity=0.286  Sum_probs=62.0

Q ss_pred             CccceeeeccCCCcc--eeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccc
Q 012933          235 PKLYGLRLIDLPKLK--RFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLF  312 (453)
Q Consensus       235 ~~L~~L~L~~~~~l~--~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~  312 (453)
                      ++|++|++.++. ++  .+   +..+..+++|+.|++++|. ++.+  .                               
T Consensus        17 ~~l~~L~l~~n~-l~~~~~---~~~~~~l~~L~~L~l~~n~-l~~~--~-------------------------------   58 (149)
T 2je0_A           17 SDVKELVLDNSR-SNEGKL---EGLTDEFEELEFLSTINVG-LTSI--A-------------------------------   58 (149)
T ss_dssp             GGCSEEECTTCB-CBTTBC---CSCCTTCTTCCEEECTTSC-CCCC--T-------------------------------
T ss_pred             ccCeEEEccCCc-CChhHH---HHHHhhcCCCcEEECcCCC-CCCc--h-------------------------------
Confidence            667777777664 33  22   3445666677777766652 2222  1                               


Q ss_pred             cccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccC--CCCCCCCCCCEEecccCcccccccCC
Q 012933          313 DEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV--PPSWHLENLEALEVSKCHGLINLLTF  390 (453)
Q Consensus       313 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~~  390 (453)
                       .++.+++|++|++++| .++......+   ..+++|++|+++++ .++.++  ..+..+++|++|+++++ .++.++..
T Consensus        59 -~~~~l~~L~~L~Ls~n-~i~~~~~~~~---~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~  131 (149)
T 2je0_A           59 -NLPKLNKLKKLELSDN-RVSGGLEVLA---EKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDY  131 (149)
T ss_dssp             -TCCCCTTCCEEECCSS-CCCSCTHHHH---HHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTH
T ss_pred             -hhhcCCCCCEEECCCC-cccchHHHHh---hhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHH
Confidence             1223455555555555 3333111111   34556666666653 344443  34555566666666553 44444320


Q ss_pred             --CcccccCCcceEEEc
Q 012933          391 --STSESLVNLGRMMIA  405 (453)
Q Consensus       391 --~~~~~l~~L~~L~i~  405 (453)
                        .....+++|++|+++
T Consensus       132 ~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          132 RENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHHHHHCTTCCEETTB
T ss_pred             HHHHHHHCCCcccccCC
Confidence              123445555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.72  E-value=4.3e-09  Score=107.37  Aligned_cols=200  Identities=15%  Similarity=0.090  Sum_probs=109.4

Q ss_pred             CcccccceEEeccccchhhhhcccccccccccccccccceeeccccccc------------cccccccccccCCCcceEe
Q 012933           24 GIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTL------------TSFCLENYTLEFPSLERVS   91 (453)
Q Consensus        24 ~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l------------~~~~~~~~~~~l~~L~~L~   91 (453)
                      ..+++|++|+|+++ .++.+|.+++.        +++|+.|+++++..+            .+... .....+++|+.|+
T Consensus       346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~--------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~-~~l~~l~~L~~L~  415 (567)
T 1dce_A          346 ATDEQLFRCELSVE-KSTVLQSELES--------CKELQELEPENKWCLLTIILLMRALDPLLYEK-ETLQYFSTLKAVD  415 (567)
T ss_dssp             STTTTSSSCCCCHH-HHHHHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH-HHHHHHHHHHHHC
T ss_pred             ccCccceeccCChh-hHHhhHHHHHH--------HHHHHHhccccchhhhhHHHHHHhcccccCCH-HHHHHHHhcccCc
Confidence            56889999999996 78999998877        888888887653211            11100 1133455566655


Q ss_pred             ecCCCCcccccc------Ccc--CCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCccc
Q 012933           92 MTHCPNMKTFSH------GIL--STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEI  163 (453)
Q Consensus        92 l~~c~~l~~~~~------~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  163 (453)
                      ...+..+..++.      .+.  ....|+.|+++++               .+..++. +..+++|++|+++++. +..+
T Consensus       416 ~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n---------------~l~~lp~-~~~l~~L~~L~Ls~N~-l~~l  478 (567)
T 1dce_A          416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK---------------DLTVLCH-LEQLLLVTHLDLSHNR-LRAL  478 (567)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS---------------CCSSCCC-GGGGTTCCEEECCSSC-CCCC
T ss_pred             chhhcccchhhhhhhhcccccccCccCceEEEecCC---------------CCCCCcC-ccccccCcEeecCccc-cccc
Confidence            211111111110      000  0124666666643               1122332 4556777777777765 5455


Q ss_pred             ccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhh-cccccccccCCCCCCCCccceeee
Q 012933          164 WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVL-HLEEQNADKEHRGPLFPKLYGLRL  242 (453)
Q Consensus       164 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~~~~~~~~L~~L~L  242 (453)
                      |...    ..+++|++|+++++ .++++ |  .+..+++|+.|+++++ .+..+. +.        ....+ ++|++|++
T Consensus       479 p~~~----~~l~~L~~L~Ls~N-~l~~l-p--~l~~l~~L~~L~Ls~N-~l~~~~~p~--------~l~~l-~~L~~L~L  540 (567)
T 1dce_A          479 PPAL----AALRCLEVLQASDN-ALENV-D--GVANLPRLQELLLCNN-RLQQSAAIQ--------PLVSC-PRLVLLNL  540 (567)
T ss_dssp             CGGG----GGCTTCCEEECCSS-CCCCC-G--GGTTCSSCCEEECCSS-CCCSSSTTG--------GGGGC-TTCCEEEC
T ss_pred             chhh----hcCCCCCEEECCCC-CCCCC-c--ccCCCCCCcEEECCCC-CCCCCCCcH--------HHhcC-CCCCEEEe
Confidence            4433    45777778877775 35443 3  3677777788877775 344331 10        11112 77777777


Q ss_pred             ccCCCcceeccC-CCcccCCCCccEEee
Q 012933          243 IDLPKLKRFCNF-TGNIIELPELQHLTI  269 (453)
Q Consensus       243 ~~~~~l~~~~~~-~~~~~~l~~L~~L~l  269 (453)
                      .+++ ++..+.. ...+..+|+|+.|++
T Consensus       541 ~~N~-l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          541 QGNS-LCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cCCc-CCCCccHHHHHHHHCcccCccCC
Confidence            7764 3332211 122344777877753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.68  E-value=1.2e-08  Score=87.56  Aligned_cols=136  Identities=13%  Similarity=0.151  Sum_probs=79.3

Q ss_pred             cccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccc
Q 012933           21 FQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT  100 (453)
Q Consensus        21 ~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  100 (453)
                      ..+..+++|+.|++++| .++.++. +..       ..++|++|+++++ .++.+   .....+++|++|++++| .++.
T Consensus        13 ~~~~~~~~L~~L~l~~n-~l~~i~~-~~~-------~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N-~l~~   78 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGY-KIPVIEN-LGA-------TLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNN-RICR   78 (176)
T ss_dssp             CEEECTTSCEEEECTTS-CCCSCCC-GGG-------GTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSS-CCCE
T ss_pred             HhcCCcCCceEEEeeCC-CCchhHH-hhh-------cCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCC-cccc
Confidence            44556778888888886 5666543 222       1347888888773 45554   22456777777777775 3555


Q ss_pred             cccCc-cCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcE
Q 012933          101 FSHGI-LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR  179 (453)
Q Consensus       101 ~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~  179 (453)
                      +|..+ ..+++|++|+++                                      ++. +..++....+  ..+++|++
T Consensus        79 ~~~~~~~~l~~L~~L~L~--------------------------------------~N~-i~~~~~~~~l--~~l~~L~~  117 (176)
T 1a9n_A           79 IGEGLDQALPDLTELILT--------------------------------------NNS-LVELGDLDPL--ASLKSLTY  117 (176)
T ss_dssp             ECSCHHHHCTTCCEEECC--------------------------------------SCC-CCCGGGGGGG--GGCTTCCE
T ss_pred             cCcchhhcCCCCCEEECC--------------------------------------CCc-CCcchhhHhh--hcCCCCCE
Confidence            55433 344555555554                                      443 3332220001  34677888


Q ss_pred             EEecCCCCccccCchh---HHhhcCCCcEEEeccCcc
Q 012933          180 LVVDDCTNMSSAIPAN---LLRCLNNLQWLEVRNCDS  213 (453)
Q Consensus       180 L~l~~c~~l~~~~~~~---~l~~l~~L~~L~l~~~~~  213 (453)
                      |++++++ +... +..   .+..+++|+.|+++++..
T Consensus       118 L~l~~N~-i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          118 LCILRNP-VTNK-KHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EECCSSG-GGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EEecCCC-CCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence            8888764 3333 322   477888899998887643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.61  E-value=2.7e-07  Score=80.32  Aligned_cols=84  Identities=18%  Similarity=0.234  Sum_probs=49.6

Q ss_pred             ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEecccCcccccccCCCccc
Q 012933          316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSE  394 (453)
Q Consensus       316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~  394 (453)
                      ..+++|++|+++++ .++.++...|   ..+++|++|++++ +.++.++. .+..+++|++|++++ +.++.++.. .+.
T Consensus        51 ~~l~~L~~L~Ls~N-~i~~i~~~~f---~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~-~~~  123 (193)
T 2wfh_A           51 SNYKHLTLIDLSNN-RISTLSNQSF---SNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEG-AFN  123 (193)
T ss_dssp             GGCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTT-TTT
T ss_pred             hcccCCCEEECCCC-cCCEeCHhHc---cCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEECCC-CCCCeeChh-hhh
Confidence            34566666666665 4555555555   5666666666666 44555554 355666666666655 456655442 334


Q ss_pred             ccCCcceEEEcc
Q 012933          395 SLVNLGRMMIAD  406 (453)
Q Consensus       395 ~l~~L~~L~i~~  406 (453)
                      .+++|++|++.+
T Consensus       124 ~l~~L~~L~L~~  135 (193)
T 2wfh_A          124 DLSALSHLAIGA  135 (193)
T ss_dssp             TCTTCCEEECCS
T ss_pred             cCccccEEEeCC
Confidence            556666666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.59  E-value=2.8e-07  Score=80.16  Aligned_cols=105  Identities=11%  Similarity=0.117  Sum_probs=46.1

Q ss_pred             CccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcc
Q 012933          263 ELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDES  342 (453)
Q Consensus       263 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~  342 (453)
                      +++.|+++++ .++.++.. ..+..+++|+.|+++++.--.+      ....+..+++|++|+++++ .++.++...|  
T Consensus        30 ~l~~L~l~~n-~i~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~--   98 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSD-GLFGRLPHLVKLELKRNQLTGI------EPNAFEGASHIQELQLGEN-KIKEISNKMF--   98 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCS-CSGGGCTTCCEEECCSSCCCCB------CTTTTTTCTTCCEEECCSC-CCCEECSSSS--
T ss_pred             CCCEEECCCC-cCCccCCc-cccccCCCCCEEECCCCCCCCc------CHhHcCCcccCCEEECCCC-cCCccCHHHh--
Confidence            6677777664 33333321 0134444555555554421110      0012234445555555554 3444444433  


Q ss_pred             cccCCCccceeeccCCCcccc-CCCCCCCCCCCEEeccc
Q 012933          343 NKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSK  380 (453)
Q Consensus       343 ~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~  380 (453)
                       ..+++|++|++++ +.++.+ |..+..+++|++|++++
T Consensus        99 -~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           99 -LGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             -TTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTT
T ss_pred             -cCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCC
Confidence             4455555555555 233333 23344445555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.58  E-value=3.6e-07  Score=78.22  Aligned_cols=86  Identities=22%  Similarity=0.185  Sum_probs=53.9

Q ss_pred             ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCccc
Q 012933          316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSE  394 (453)
Q Consensus       316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~  394 (453)
                      ..+++|++|+++++ .++.++...+   ..+++|+.|++++ +.++.++.. +..+++|++|++++ +.++.++.. ...
T Consensus        49 ~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~-~~~  121 (177)
T 2o6r_A           49 DKLTQLTKLSLSQN-QIQSLPDGVF---DKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDG-IFD  121 (177)
T ss_dssp             TTCTTCSEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTT-TTT
T ss_pred             cCcccccEEECCCC-cceEeChhHc---cCCCccCEEECCC-CCccccCHHHhhCCcccCEEECcC-CcceEeCHH-Hhc
Confidence            34566777777666 5666665555   5677777777777 456666554 45667777777766 456665542 334


Q ss_pred             ccCCcceEEEcccc
Q 012933          395 SLVNLGRMMIADCK  408 (453)
Q Consensus       395 ~l~~L~~L~i~~C~  408 (453)
                      .+++|++|++++++
T Consensus       122 ~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          122 RLTSLQKIWLHTNP  135 (177)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CCcccCEEEecCCC
Confidence            56777777776554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.56  E-value=7.5e-06  Score=79.61  Aligned_cols=145  Identities=11%  Similarity=0.076  Sum_probs=90.9

Q ss_pred             CccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccc
Q 012933          235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDE  314 (453)
Q Consensus       235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~  314 (453)
                      .+|+.+.+.+  .++.+  ....+..+.+|+.+.+..  ....+....  +.....++.+...... +.        -..
T Consensus       230 ~~l~~i~ip~--~~~~i--~~~~f~~~~~l~~~~~~~--~~~~i~~~~--F~~~~~l~~~~~~~~~-i~--------~~~  292 (394)
T 4fs7_A          230 TGVKNIIIPD--SFTEL--GKSVFYGCTDLESISIQN--NKLRIGGSL--FYNCSGLKKVIYGSVI-VP--------EKT  292 (394)
T ss_dssp             CCCCEEEECT--TCCEE--CSSTTTTCSSCCEEEECC--TTCEECSCT--TTTCTTCCEEEECSSE-EC--------TTT
T ss_pred             CCCceEEECC--Cceec--ccccccccccceeEEcCC--Ccceeeccc--cccccccceeccCcee-ec--------ccc
Confidence            4556655532  23333  224556677777777754  223333332  4444455544433211 00        011


Q ss_pred             cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcc
Q 012933          315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTS  393 (453)
Q Consensus       315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~  393 (453)
                      ....++|+.+.+.+  .++.+....|   .++.+|+.+.+..  .++.+... +.++++|+++.+..  +++.+... .+
T Consensus       293 F~~~~~L~~i~l~~--~i~~I~~~aF---~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~-aF  362 (394)
T 4fs7_A          293 FYGCSSLTEVKLLD--SVKFIGEEAF---ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGAN-AF  362 (394)
T ss_dssp             TTTCTTCCEEEECT--TCCEECTTTT---TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTT-TB
T ss_pred             cccccccccccccc--ccceechhhh---cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHH-Hh
Confidence            23457899988865  4888888888   8999999999964  47778764 67789999999953  47777653 56


Q ss_pred             cccCCcceEEEcc
Q 012933          394 ESLVNLGRMMIAD  406 (453)
Q Consensus       394 ~~l~~L~~L~i~~  406 (453)
                      .+|++|+++++..
T Consensus       363 ~~C~~L~~i~lp~  375 (394)
T 4fs7_A          363 QGCINLKKVELPK  375 (394)
T ss_dssp             TTCTTCCEEEEEG
T ss_pred             hCCCCCCEEEECC
Confidence            6889999999864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.55  E-value=9.6e-06  Score=78.93  Aligned_cols=219  Identities=8%  Similarity=0.047  Sum_probs=125.0

Q ss_pred             CccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccccccccc
Q 012933          148 DMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADK  227 (453)
Q Consensus       148 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  227 (453)
                      +|+++.+.+  .+..+.... +  ..+++|+++++.+. +++.+ +...+. .++|+.+.+.+  .++.+...    +  
T Consensus       158 ~L~~i~lp~--~l~~I~~~a-F--~~c~~L~~l~l~~n-~l~~I-~~~aF~-~~~L~~l~lp~--~l~~I~~~----a--  221 (401)
T 4fdw_A          158 TVQEIVFPS--TLEQLKEDI-F--YYCYNLKKADLSKT-KITKL-PASTFV-YAGIEEVLLPV--TLKEIGSQ----A--  221 (401)
T ss_dssp             CCCEEECCT--TCCEECSST-T--TTCTTCCEEECTTS-CCSEE-CTTTTT-TCCCSEEECCT--TCCEECTT----T--
T ss_pred             CceEEEeCC--CccEehHHH-h--hCcccCCeeecCCC-cceEe-chhhEe-ecccCEEEeCC--chheehhh----H--
Confidence            466666654  344444333 3  34667777777653 34433 333344 46677776653  23333210    0  


Q ss_pred             CCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccc
Q 012933          228 EHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQ  307 (453)
Q Consensus       228 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  307 (453)
                        -..+ ++|+.+.+.+  +++.+  ....+.+ .+|+.+.+.  ..++.++...  +..+++|+.+.+.++....  +.
T Consensus       222 --F~~~-~~L~~l~l~~--~l~~I--~~~aF~~-~~L~~i~lp--~~i~~I~~~a--F~~c~~L~~l~l~~~~~~~--~~  287 (401)
T 4fdw_A          222 --FLKT-SQLKTIEIPE--NVSTI--GQEAFRE-SGITTVKLP--NGVTNIASRA--FYYCPELAEVTTYGSTFND--DP  287 (401)
T ss_dssp             --TTTC-TTCCCEECCT--TCCEE--CTTTTTT-CCCSEEEEE--TTCCEECTTT--TTTCTTCCEEEEESSCCCC--CT
T ss_pred             --hhCC-CCCCEEecCC--CccCc--ccccccc-CCccEEEeC--CCccEEChhH--hhCCCCCCEEEeCCccccC--Cc
Confidence              0012 5666666653  34444  2234444 567777773  3455555544  6667777777775532110  00


Q ss_pred             cc-ccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccc
Q 012933          308 VQ-PLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLI  385 (453)
Q Consensus       308 l~-~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~  385 (453)
                      .. ..-.....+++|+.+.+.+  .++.+....|   .++++|+.+.+..  +++.+... +.++ +|+++.+.+ +.+.
T Consensus       288 ~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF---~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~  358 (401)
T 4fdw_A          288 EAMIHPYCLEGCPKLARFEIPE--SIRILGQGLL---GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPP  358 (401)
T ss_dssp             TCEECTTTTTTCTTCCEECCCT--TCCEECTTTT---TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCC
T ss_pred             ccEECHHHhhCCccCCeEEeCC--ceEEEhhhhh---cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCc
Confidence            00 0001133567888888874  5888888888   8889999999965  47777664 5666 999999976 4566


Q ss_pred             cccCCCccccc-CCcceEEEcc
Q 012933          386 NLLTFSTSESL-VNLGRMMIAD  406 (453)
Q Consensus       386 ~l~~~~~~~~l-~~L~~L~i~~  406 (453)
                      .++.. .+..+ .++++|++..
T Consensus       359 ~l~~~-~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          359 QVFEK-VWYGFPDDITVIRVPA  379 (401)
T ss_dssp             BCCCS-SCCCSCTTCCEEEECG
T ss_pred             ccccc-cccCCCCCccEEEeCH
Confidence            65543 33344 3678888865

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.49  E-value=9.2e-06  Score=79.05  Aligned_cols=262  Identities=8%  Similarity=0.092  Sum_probs=162.9

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ  137 (453)
Q Consensus        58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  137 (453)
                      +..++.+.+-.  .++.+....+. . .+|+.+.+...  ++.++.....-.+|+.+.+..  ++..+.-          
T Consensus       112 ~~~l~~i~ip~--~i~~I~~~aF~-~-~~L~~i~l~~~--i~~I~~~aF~~~~L~~i~lp~--~l~~I~~----------  173 (401)
T 4fdw_A          112 LKGYNEIILPN--SVKSIPKDAFR-N-SQIAKVVLNEG--LKSIGDMAFFNSTVQEIVFPS--TLEQLKE----------  173 (401)
T ss_dssp             CSSCSEEECCT--TCCEECTTTTT-T-CCCSEEECCTT--CCEECTTTTTTCCCCEEECCT--TCCEECS----------
T ss_pred             cCCccEEEECC--ccCEehHhhcc-c-CCccEEEeCCC--ccEECHHhcCCCCceEEEeCC--CccEehH----------
Confidence            45566666543  23444333222 2 36778777653  666655444435677777763  1111110          


Q ss_pred             HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933          138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV  217 (453)
Q Consensus       138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~  217 (453)
                         .+..++++|+.+.+.++. +..++... +.   +.+|+++.+..  +++.+ +..++.++++|+.+++.+  .++.+
T Consensus       174 ---~aF~~c~~L~~l~l~~n~-l~~I~~~a-F~---~~~L~~l~lp~--~l~~I-~~~aF~~~~~L~~l~l~~--~l~~I  240 (401)
T 4fdw_A          174 ---DIFYYCYNLKKADLSKTK-ITKLPAST-FV---YAGIEEVLLPV--TLKEI-GSQAFLKTSQLKTIEIPE--NVSTI  240 (401)
T ss_dssp             ---STTTTCTTCCEEECTTSC-CSEECTTT-TT---TCCCSEEECCT--TCCEE-CTTTTTTCTTCCCEECCT--TCCEE
T ss_pred             ---HHhhCcccCCeeecCCCc-ceEechhh-Ee---ecccCEEEeCC--chhee-hhhHhhCCCCCCEEecCC--CccCc
Confidence               123456888888887654 66666555 43   57899998874  35544 556688899999999875  34433


Q ss_pred             hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCC----CceeccCCcccccCCCccc
Q 012933          218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPD----METFISNSVVHVTTDNKEP  293 (453)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~----l~~~~~~~~~~~~l~~L~~  293 (453)
                      ..    .+.   .  . .+|+.+.+.  .+++.+  ....+.++++|+.+.+.+...    ...++...  +..+++|+.
T Consensus       241 ~~----~aF---~--~-~~L~~i~lp--~~i~~I--~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a--F~~c~~L~~  304 (401)
T 4fdw_A          241 GQ----EAF---R--E-SGITTVKLP--NGVTNI--ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC--LEGCPKLAR  304 (401)
T ss_dssp             CT----TTT---T--T-CCCSEEEEE--TTCCEE--CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT--TTTCTTCCE
T ss_pred             cc----ccc---c--c-CCccEEEeC--CCccEE--ChhHhhCCCCCCEEEeCCccccCCcccEECHHH--hhCCccCCe
Confidence            22    111   0  1 568888884  346665  346788899999999976432    22355444  778889999


Q ss_pred             ccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCC-
Q 012933          294 QKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLE-  371 (453)
Q Consensus       294 L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~-  371 (453)
                      +.+.+.  +...     .-.....+++|+.+.+.+  +++.+....|   .++ +|+.+.+.+ +....++.. +..++ 
T Consensus       305 l~l~~~--i~~I-----~~~aF~~c~~L~~l~lp~--~l~~I~~~aF---~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~  370 (401)
T 4fdw_A          305 FEIPES--IRIL-----GQGLLGGNRKVTQLTIPA--NVTQINFSAF---NNT-GIKEVKVEG-TTPPQVFEKVWYGFPD  370 (401)
T ss_dssp             ECCCTT--CCEE-----CTTTTTTCCSCCEEEECT--TCCEECTTSS---SSS-CCCEEEECC-SSCCBCCCSSCCCSCT
T ss_pred             EEeCCc--eEEE-----hhhhhcCCCCccEEEECc--cccEEcHHhC---CCC-CCCEEEEcC-CCCcccccccccCCCC
Confidence            888742  2210     001233568999999965  4889999999   788 999999999 455666553 44553 


Q ss_pred             CCCEEeccc
Q 012933          372 NLEALEVSK  380 (453)
Q Consensus       372 ~L~~L~l~~  380 (453)
                      +++.|.+-.
T Consensus       371 ~l~~l~vp~  379 (401)
T 4fdw_A          371 DITVIRVPA  379 (401)
T ss_dssp             TCCEEEECG
T ss_pred             CccEEEeCH
Confidence            677887743

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.48  E-value=3.7e-07  Score=79.37  Aligned_cols=76  Identities=13%  Similarity=0.243  Sum_probs=47.9

Q ss_pred             ceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccc-ccCccCC
Q 012933           30 VNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF-SHGILST  108 (453)
Q Consensus        30 ~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~  108 (453)
                      +.+++++. .++.+|..+          .+++++|++++ ..++.++.......+++|++|+++++. ++.+ |..+..+
T Consensus        11 ~~l~~s~~-~l~~ip~~~----------~~~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l   77 (192)
T 1w8a_A           11 TTVDCTGR-GLKEIPRDI----------PLHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGA   77 (192)
T ss_dssp             TEEECTTS-CCSSCCSCC----------CTTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTC
T ss_pred             CEEEcCCC-CcCcCccCC----------CCCCCEEECCC-CcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCc
Confidence            67777775 677777642          23778888887 346555543334567788888887764 4443 4455556


Q ss_pred             CCcceEEecc
Q 012933          109 PKLHKVQVTE  118 (453)
Q Consensus       109 ~~L~~L~l~~  118 (453)
                      ++|++|++++
T Consensus        78 ~~L~~L~Ls~   87 (192)
T 1w8a_A           78 SHIQELQLGE   87 (192)
T ss_dssp             TTCCEEECCS
T ss_pred             ccCCEEECCC
Confidence            6666666664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.44  E-value=1.7e-07  Score=95.51  Aligned_cols=159  Identities=13%  Similarity=0.181  Sum_probs=108.6

Q ss_pred             cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc
Q 012933           23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS  102 (453)
Q Consensus        23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  102 (453)
                      ++.+++|+.|+...+..+..++................|+.|++++ ..++.++.   ...+++|+.|++++| +++.+|
T Consensus       405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~-n~l~~lp~---~~~l~~L~~L~Ls~N-~l~~lp  479 (567)
T 1dce_A          405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH-KDLTVLCH---LEQLLLVTHLDLSHN-RLRALP  479 (567)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTT-SCCSSCCC---GGGGTTCCEEECCSS-CCCCCC
T ss_pred             HHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecC-CCCCCCcC---ccccccCcEeecCcc-cccccc
Confidence            4667888888833334555444311100000000123689999998 46777653   568999999999997 578999


Q ss_pred             cCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCccc--ccCCCCCcCccCCCcEE
Q 012933          103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEI--WHGQALPVSFFNNLARL  180 (453)
Q Consensus       103 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~l~~~~l~~L~~L  180 (453)
                      ..+..+++|+.|+++++               .+..++ .+..+++|++|+++++. +..+  +...    ..+++|++|
T Consensus       480 ~~~~~l~~L~~L~Ls~N---------------~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l----~~l~~L~~L  538 (567)
T 1dce_A          480 PALAALRCLEVLQASDN---------------ALENVD-GVANLPRLQELLLCNNR-LQQSAAIQPL----VSCPRLVLL  538 (567)
T ss_dssp             GGGGGCTTCCEEECCSS---------------CCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGG----GGCTTCCEE
T ss_pred             hhhhcCCCCCEEECCCC---------------CCCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHHH----hcCCCCCEE
Confidence            99999999999999954               223345 67789999999999986 5554  3333    568999999


Q ss_pred             EecCCCCccccCch--hHHhhcCCCcEEEe
Q 012933          181 VVDDCTNMSSAIPA--NLLRCLNNLQWLEV  208 (453)
Q Consensus       181 ~l~~c~~l~~~~~~--~~l~~l~~L~~L~l  208 (453)
                      ++++++ +++.++.  .....+++|+.|++
T Consensus       539 ~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          539 NLQGNS-LCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             ECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence            999964 5554332  24566899998863

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.36  E-value=2e-06  Score=73.50  Aligned_cols=61  Identities=18%  Similarity=0.155  Sum_probs=49.2

Q ss_pred             ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccC
Q 012933          316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKC  381 (453)
Q Consensus       316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c  381 (453)
                      ..+++|++|+++++ .++.++...+   ..+++|++|++++ +.++.+|.. +..+++|++|+++++
T Consensus        73 ~~l~~L~~L~l~~N-~l~~~~~~~~---~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           73 DKLTKLTILYLHEN-KLQSLPNGVF---DKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCCccCEEECCCC-CccccCHHHh---hCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCC
Confidence            45788888888888 6777777666   7889999999998 478888875 467899999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.33  E-value=9.4e-07  Score=76.88  Aligned_cols=123  Identities=12%  Similarity=0.158  Sum_probs=79.3

Q ss_pred             ceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc-CccCC
Q 012933           30 VNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GILST  108 (453)
Q Consensus        30 ~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~  108 (453)
                      +.+++++. .++.+|.++          .+++++|++++ ..++.++.  ....+++|+.|+++++. ++.++. .+..+
T Consensus        13 ~~l~~~~~-~l~~ip~~~----------~~~l~~L~L~~-n~i~~ip~--~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l   77 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKGI----------PRDVTELYLDG-NQFTLVPK--ELSNYKHLTLIDLSNNR-ISTLSNQSFSNM   77 (193)
T ss_dssp             TEEECTTS-CCSSCCSCC----------CTTCCEEECCS-SCCCSCCG--GGGGCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred             CEEEcCCC-CCCcCCCCC----------CCCCCEEECCC-CcCchhHH--HhhcccCCCEEECCCCc-CCEeCHhHccCC
Confidence            45677764 577776532          34778888877 44665552  25677888888888764 555443 46667


Q ss_pred             CCcceEEeccccccccccccCCccchhHHHH-HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCC
Q 012933          109 PKLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT  186 (453)
Q Consensus       109 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~  186 (453)
                      ++|++|+++++.               +..+ +..+..+++|++|+++++. +..++... +  ..+++|++|++++.+
T Consensus        78 ~~L~~L~Ls~N~---------------l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~-~--~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           78 TQLLTLILSYNR---------------LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGA-F--NDLSALSHLAIGANP  137 (193)
T ss_dssp             TTCCEEECCSSC---------------CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTT-T--TTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCc---------------cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhh-h--hcCccccEEEeCCCC
Confidence            888888887542               1112 1234567888888888876 55555433 2  347899999999754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.31  E-value=6.7e-07  Score=94.06  Aligned_cols=113  Identities=19%  Similarity=0.075  Sum_probs=64.6

Q ss_pred             CCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcce
Q 012933          255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH  334 (453)
Q Consensus       255 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~  334 (453)
                      +..+..+++|+.|+++++. +..++..   +..+++|+.|+++++.--.       ..+.++.+++|++|+|++| .++.
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~---~~~l~~L~~L~Ls~N~l~~-------lp~~~~~l~~L~~L~Ls~N-~l~~  284 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQ-IFNISAN---IFKYDFLTRLYLNGNSLTE-------LPAEIKNLSNLRVLDLSHN-RLTS  284 (727)
T ss_dssp             -----CCCCCCEEECTTSC-CSCCCGG---GGGCCSCSCCBCTTSCCSC-------CCGGGGGGTTCCEEECTTS-CCSS
T ss_pred             hhhhccCCCCcEEECCCCC-CCCCChh---hcCCCCCCEEEeeCCcCcc-------cChhhhCCCCCCEEeCcCC-cCCc
Confidence            3456677778888887754 3344443   3356677777776652211       1123455667777777766 4555


Q ss_pred             ecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccc
Q 012933          335 LWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLI  385 (453)
Q Consensus       335 l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~  385 (453)
                      ++...    ..+++|++|++++ +.++.+|..+..+++|++|++++ +.++
T Consensus       285 lp~~~----~~l~~L~~L~L~~-N~l~~lp~~~~~l~~L~~L~L~~-N~l~  329 (727)
T 4b8c_D          285 LPAEL----GSCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVEG-NPLE  329 (727)
T ss_dssp             CCSSG----GGGTTCSEEECCS-SCCCCCCSSTTSCTTCCCEECTT-SCCC
T ss_pred             cChhh----cCCCCCCEEECCC-CCCCccChhhhcCCCccEEeCCC-CccC
Confidence            54432    5666777777776 35666666666677777777765 3344

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.31  E-value=1.1e-08  Score=89.64  Aligned_cols=57  Identities=12%  Similarity=0.079  Sum_probs=33.5

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccc
Q 012933           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEK  119 (453)
Q Consensus        58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~  119 (453)
                      +++|++|+++++ .++.++   ....+++|++|++++| .++.+|..+..+++|++|+++++
T Consensus        47 l~~L~~L~ls~n-~l~~l~---~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           47 LKACKHLALSTN-NIEKIS---SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             TTTCSEEECSEE-EESCCC---CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE
T ss_pred             CCCCCEEECCCC-CCcccc---ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC
Confidence            667777777663 455544   2455677777777665 35555544444556666666643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.28  E-value=8e-08  Score=81.39  Aligned_cols=88  Identities=8%  Similarity=0.214  Sum_probs=56.5

Q ss_pred             CcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC-CCCC----CCCCCEEecccCcccccccCCCccc
Q 012933          320 RLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWH----LENLEALEVSKCHGLINLLTFSTSE  394 (453)
Q Consensus       320 ~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~----l~~L~~L~l~~c~~l~~l~~~~~~~  394 (453)
                      +|+.|++++|. +++.....+   ..+++|++|++++|..+++-.- .+..    .++|++|++++|.++++-....+ .
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L---~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~  136 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHM---EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-H  136 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGG---TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-G
T ss_pred             eEeEEeCcCCC-ccHHHHHHh---cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-h
Confidence            57777777774 555444433   6777788888888776664221 1122    24678888888887777544323 3


Q ss_pred             ccCCcceEEEcccchhHH
Q 012933          395 SLVNLGRMMIADCKMIEQ  412 (453)
Q Consensus       395 ~l~~L~~L~i~~C~~l~~  412 (453)
                      .+++|++|++++|+.+++
T Consensus       137 ~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCEEECCCCCCCCc
Confidence            578888888888887754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.28  E-value=3.5e-06  Score=71.56  Aligned_cols=80  Identities=16%  Similarity=0.151  Sum_probs=36.2

Q ss_pred             CCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccC
Q 012933          319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLV  397 (453)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~  397 (453)
                      ++|++|+++++ .++.++...|   ..+++|++|++++ +.++.++.. +..+++|++|++++ ++++.++.. .+..++
T Consensus        30 ~~l~~L~L~~N-~i~~~~~~~~---~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~  102 (170)
T 3g39_A           30 TTTQVLYLYDN-QITKLEPGVF---DRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRG-AFDNLK  102 (170)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTT---TTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT-TTTTCT
T ss_pred             CCCcEEEcCCC-cCCccChhhh---cCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCC-CccCEeCHH-HhcCCC
Confidence            34444444444 3444443333   4445555555554 344444443 24445555555544 344444331 233444


Q ss_pred             CcceEEEc
Q 012933          398 NLGRMMIA  405 (453)
Q Consensus       398 ~L~~L~i~  405 (453)
                      +|++|+++
T Consensus       103 ~L~~L~L~  110 (170)
T 3g39_A          103 SLTHIWLL  110 (170)
T ss_dssp             TCCEEECC
T ss_pred             CCCEEEeC
Confidence            55555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.25  E-value=5.3e-07  Score=94.80  Aligned_cols=82  Identities=17%  Similarity=0.125  Sum_probs=39.8

Q ss_pred             cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc
Q 012933           23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS  102 (453)
Q Consensus        23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  102 (453)
                      +..+++|+.|+|+++ .+..+|..++.        +++|++|+|+++ .++.++..  ...+++|+.|++++|. ++.+|
T Consensus       220 ~~~l~~L~~L~Ls~n-~l~~l~~~~~~--------l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L~~L~Ls~N~-l~~lp  286 (727)
T 4b8c_D          220 KYDDQLWHALDLSNL-QIFNISANIFK--------YDFLTRLYLNGN-SLTELPAE--IKNLSNLRVLDLSHNR-LTSLP  286 (727)
T ss_dssp             --CCCCCCEEECTTS-CCSCCCGGGGG--------CCSCSCCBCTTS-CCSCCCGG--GGGGTTCCEEECTTSC-CSSCC
T ss_pred             hccCCCCcEEECCCC-CCCCCChhhcC--------CCCCCEEEeeCC-cCcccChh--hhCCCCCCEEeCcCCc-CCccC
Confidence            334455555555554 34455544333        555555555552 34433322  3445555555555542 44555


Q ss_pred             cCccCCCCcceEEec
Q 012933          103 HGILSTPKLHKVQVT  117 (453)
Q Consensus       103 ~~~~~~~~L~~L~l~  117 (453)
                      ..+..+++|++|+++
T Consensus       287 ~~~~~l~~L~~L~L~  301 (727)
T 4b8c_D          287 AELGSCFQLKYFYFF  301 (727)
T ss_dssp             SSGGGGTTCSEEECC
T ss_pred             hhhcCCCCCCEEECC
Confidence            555555555555555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.20  E-value=2.6e-08  Score=87.27  Aligned_cols=83  Identities=17%  Similarity=0.198  Sum_probs=62.7

Q ss_pred             ccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccc
Q 012933           22 QVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF  101 (453)
Q Consensus        22 ~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  101 (453)
                      .++.+++|++|+++++ .++.+| .+..        +++|++|+++++ .++.++..  ...+++|++|++++| +++.+
T Consensus        43 ~~~~l~~L~~L~ls~n-~l~~l~-~~~~--------l~~L~~L~l~~n-~l~~l~~~--~~~~~~L~~L~L~~N-~l~~l  108 (198)
T 1ds9_A           43 TLSTLKACKHLALSTN-NIEKIS-SLSG--------MENLRILSLGRN-LIKKIENL--DAVADTLEELWISYN-QIASL  108 (198)
T ss_dssp             HHHHTTTCSEEECSEE-EESCCC-CHHH--------HTTCCEEEEEEE-EECSCSSH--HHHHHHCSEEEEEEE-ECCCH
T ss_pred             HHhcCCCCCEEECCCC-CCcccc-cccc--------CCCCCEEECCCC-Ccccccch--hhcCCcCCEEECcCC-cCCcC
Confidence            4677899999999997 677777 5555        899999999984 56665543  456799999999997 56666


Q ss_pred             ccCccCCCCcceEEeccc
Q 012933          102 SHGILSTPKLHKVQVTEK  119 (453)
Q Consensus       102 ~~~~~~~~~L~~L~l~~~  119 (453)
                      | .+..+++|++|+++++
T Consensus       109 ~-~~~~l~~L~~L~l~~N  125 (198)
T 1ds9_A          109 S-GIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             H-HHHHHHHSSEEEESEE
T ss_pred             C-ccccCCCCCEEECCCC
Confidence            5 4556677777777743

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.20  E-value=3.6e-07  Score=77.38  Aligned_cols=94  Identities=11%  Similarity=0.134  Sum_probs=50.4

Q ss_pred             CCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCC
Q 012933          176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT  255 (453)
Q Consensus       176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~  255 (453)
                      +|++|++++|. +++. ....+..+++|++|++++|..+++...    ..+....... ++|++|++.+|+++++-  +-
T Consensus        62 ~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL----~~L~~~~~~~-~~L~~L~Ls~C~~ITD~--Gl  132 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCL----ERLSQLENLQ-KSMLEMEIISCGNVTDK--GI  132 (176)
T ss_dssp             CEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHH----HHHHTCHHHH-HHCCEEEEESCTTCCHH--HH
T ss_pred             eEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHH----HHHHhccccc-CCCCEEEcCCCCcCCHH--HH
Confidence            46666666665 4332 222345666666666666666655321    1110000001 45777777777766653  11


Q ss_pred             CcccCCCCccEEeeecCCCCcee
Q 012933          256 GNIIELPELQHLTIQNCPDMETF  278 (453)
Q Consensus       256 ~~~~~l~~L~~L~l~~c~~l~~~  278 (453)
                      ..+..+++|++|++++|+.+++.
T Consensus       133 ~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             HHGGGCTTCCEEEEESCTTCCCH
T ss_pred             HHHhcCCCCCEEECCCCCCCCch
Confidence            23456777777777777776653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.16  E-value=5e-06  Score=70.88  Aligned_cols=60  Identities=13%  Similarity=0.145  Sum_probs=29.9

Q ss_pred             ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEeccc
Q 012933          316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSK  380 (453)
Q Consensus       316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~  380 (453)
                      ..+++|++|+++++ .++.++...|   ..+++|+.|++++ +.++.+|.. +..+++|++|++++
T Consensus        54 ~~l~~L~~L~Ls~N-~l~~i~~~~~---~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           54 DHLVNLQQLYFNSN-KLTAIPTGVF---DKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             cCCcCCCEEECCCC-CCCccChhHh---CCcchhhEEECCC-CccceeCHHHhccccCCCEEEeCC
Confidence            34455555555555 4455544444   4455555555555 344444443 44455555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.13  E-value=9.8e-06  Score=69.07  Aligned_cols=83  Identities=17%  Similarity=0.154  Sum_probs=66.5

Q ss_pred             CCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccC
Q 012933          319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLV  397 (453)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~  397 (453)
                      ++|++|+++++ .++.++...|   ..+++|+.|++++ +.++.+|.. +..+++|++|++++ ++++.++.. .+..++
T Consensus        33 ~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~-~~~~l~  105 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKLEPGVF---DHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRG-AFDNLK  105 (174)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT-TTTTCT
T ss_pred             CCCcEEEeCCC-CccccCHHHh---cCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCC-CccceeCHH-Hhcccc
Confidence            68888888888 6777776666   7889999999999 578888876 47889999999977 678887663 456788


Q ss_pred             CcceEEEcccc
Q 012933          398 NLGRMMIADCK  408 (453)
Q Consensus       398 ~L~~L~i~~C~  408 (453)
                      +|++|++.+.+
T Consensus       106 ~L~~L~L~~N~  116 (174)
T 2r9u_A          106 SLTHIYLYNNP  116 (174)
T ss_dssp             TCSEEECCSSC
T ss_pred             CCCEEEeCCCC
Confidence            99999997654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.11  E-value=0.00028  Score=68.35  Aligned_cols=82  Identities=16%  Similarity=0.240  Sum_probs=56.8

Q ss_pred             cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccc
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSES  395 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~  395 (453)
                      ..++|+.+.+..  .++.++...|   .++.+|+.+.+..  +++.+... +..+.+|+++.+-  .+++.+... .+.+
T Consensus       286 ~c~~L~~i~l~~--~i~~I~~~aF---~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip--~sv~~I~~~-aF~~  355 (394)
T 4gt6_A          286 NCPALQDIEFSS--RITELPESVF---AGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIP--SSVTKIPES-AFSN  355 (394)
T ss_dssp             TCTTCCEEECCT--TCCEECTTTT---TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEC--TTCCBCCGG-GGTT
T ss_pred             cccccccccCCC--cccccCceee---cCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEEC--cccCEEhHh-HhhC
Confidence            346777777753  5777887777   7888888888865  46677654 6677888888884  346666543 4567


Q ss_pred             cCCcceEEEcccc
Q 012933          396 LVNLGRMMIADCK  408 (453)
Q Consensus       396 l~~L~~L~i~~C~  408 (453)
                      |++|+.+++.+-.
T Consensus       356 C~~L~~i~~~~~~  368 (394)
T 4gt6_A          356 CTALNNIEYSGSR  368 (394)
T ss_dssp             CTTCCEEEESSCH
T ss_pred             CCCCCEEEECCce
Confidence            7888888887643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.00  E-value=0.00036  Score=67.63  Aligned_cols=145  Identities=10%  Similarity=0.081  Sum_probs=81.3

Q ss_pred             cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (453)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~  253 (453)
                      ..+|+.+.+...  .+.+ ....+..+.+++.+.+...  +..+...        .-..+ +.++.+.....    .+  
T Consensus       229 ~~~l~~i~ip~~--~~~i-~~~~f~~~~~l~~~~~~~~--~~~i~~~--------~F~~~-~~l~~~~~~~~----~i--  288 (394)
T 4fs7_A          229 KTGVKNIIIPDS--FTEL-GKSVFYGCTDLESISIQNN--KLRIGGS--------LFYNC-SGLKKVIYGSV----IV--  288 (394)
T ss_dssp             TCCCCEEEECTT--CCEE-CSSTTTTCSSCCEEEECCT--TCEECSC--------TTTTC-TTCCEEEECSS----EE--
T ss_pred             cCCCceEEECCC--ceec-ccccccccccceeEEcCCC--cceeecc--------ccccc-cccceeccCce----ee--
Confidence            568888888753  3332 3445777888888888652  2222110        00011 45555544321    12  


Q ss_pred             CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc
Q 012933          254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ  333 (453)
Q Consensus       254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~  333 (453)
                      ....+..+.+|+.+.+..  .++.++...  +..+                              ++|+.+++.+  .++
T Consensus       289 ~~~~F~~~~~L~~i~l~~--~i~~I~~~a--F~~c------------------------------~~L~~i~lp~--~v~  332 (394)
T 4fs7_A          289 PEKTFYGCSSLTEVKLLD--SVKFIGEEA--FESC------------------------------TSLVSIDLPY--LVE  332 (394)
T ss_dssp             CTTTTTTCTTCCEEEECT--TCCEECTTT--TTTC------------------------------TTCCEECCCT--TCC
T ss_pred             cccccccccccccccccc--ccceechhh--hcCC------------------------------CCCCEEEeCC--ccc
Confidence            234567788888888853  455554433  3333                              3455555533  356


Q ss_pred             eecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecc
Q 012933          334 HLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVS  379 (453)
Q Consensus       334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~  379 (453)
                      .+....|   .++.+|+.+.+..  .++.+... +.++++|+++.+.
T Consensus       333 ~I~~~aF---~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          333 EIGKRSF---RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             EECTTTT---TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred             EEhHHhc---cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence            6666666   6677777777654  25666553 5566777777774

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.96  E-value=6.9e-06  Score=78.64  Aligned_cols=66  Identities=23%  Similarity=0.369  Sum_probs=36.9

Q ss_pred             cCCCcCEEeecCCCCcce-ecccCCcccccCCCccceeeccCCCccc-----cCCCCCCCCCCCEEecccCccccc
Q 012933          317 SFPRLRWLELSGLHKVQH-LWKENDESNKAFANLESLEISECSKLQK-----LVPPSWHLENLEALEVSKCHGLIN  386 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~  386 (453)
                      .+|+|++|.+++|. +.+ .....+. ...+++|++|+++. +.+++     ++..+.++++|+.|++++| .+.+
T Consensus       250 ~~p~Lr~L~L~~~~-i~~~~~~~la~-a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d  321 (362)
T 2ra8_A          250 RFPNLKWLGIVDAE-EQNVVVEMFLE-SDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSD  321 (362)
T ss_dssp             TCTTCCEEEEESCT-THHHHHHHHHH-CSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCH
T ss_pred             CCCCcCEEeCCCCC-CchHHHHHHHh-CccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCH
Confidence            46788888887773 332 1111100 03567777777765 44543     3444456677777777654 3443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.81  E-value=4.7e-05  Score=64.47  Aligned_cols=61  Identities=15%  Similarity=0.146  Sum_probs=51.0

Q ss_pred             cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEeccc
Q 012933          315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSK  380 (453)
Q Consensus       315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~  380 (453)
                      +..+++|++|+++++ .++.++.+.|   ..+++|+.|++++ +.++.++.. +..+++|++|++++
T Consensus        50 ~~~l~~L~~L~Ls~N-~l~~l~~~~f---~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           50 FDRLTQLTRLDLDNN-QLTVLPAGVF---DKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             TTTCTTCSEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             hcCcccCCEEECCCC-CcCccChhhc---cCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCC
Confidence            346788999999888 6888888777   7899999999999 678888875 77889999999977

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.81  E-value=6.5e-05  Score=71.46  Aligned_cols=85  Identities=16%  Similarity=0.103  Sum_probs=38.4

Q ss_pred             ccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccccccccc-ccccCCCcCEEeecCCCCcceec
Q 012933          258 IIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFD-EKVSFPRLRWLELSGLHKVQHLW  336 (453)
Q Consensus       258 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~l~  336 (453)
                      +..+++|+.|+|++...++.++...  +..+++|+.|+++++. +.      ...+ .+..+++|++|+|+++ .++.++
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~--~~~l~~L~~L~l~~N~-l~------~~~~~~~~~l~~L~~L~l~~N-~l~~~~   96 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRD--LRGLGELRNLTIVKSG-LR------FVAPDAFHFTPRLSRLNLSFN-ALESLS   96 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGG--SCSCCCCSEEECCSSC-CC------EECTTGGGSCSCCCEEECCSS-CCSCCC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhH--hccccCCCEEECCCCc-cc------eeCHHHhcCCcCCCEEeCCCC-ccceeC
Confidence            5555566666666544555544332  3333344444443331 11      0001 1234455555555555 455555


Q ss_pred             ccCCcccccCCCccceeecc
Q 012933          337 KENDESNKAFANLESLEISE  356 (453)
Q Consensus       337 ~~~~~~~~~l~~L~~L~l~~  356 (453)
                      ...|   ..++ |+.|++.+
T Consensus        97 ~~~~---~~~~-L~~l~l~~  112 (347)
T 2ifg_A           97 WKTV---QGLS-LQELVLSG  112 (347)
T ss_dssp             STTT---CSCC-CCEEECCS
T ss_pred             HHHc---ccCC-ceEEEeeC
Confidence            4443   2333 55555555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.78  E-value=5.8e-05  Score=71.80  Aligned_cols=60  Identities=18%  Similarity=0.109  Sum_probs=28.4

Q ss_pred             ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933          316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK  380 (453)
Q Consensus       316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  380 (453)
                      ..+++|+.|+|+++ .++.++...|   ..+++|++|++++ +.++.+|........|+.|++.+
T Consensus        53 ~~l~~L~~L~l~~N-~l~~~~~~~~---~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~  112 (347)
T 2ifg_A           53 RGLGELRNLTIVKS-GLRFVAPDAF---HFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSG  112 (347)
T ss_dssp             CSCCCCSEEECCSS-CCCEECTTGG---GSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCS
T ss_pred             ccccCCCEEECCCC-ccceeCHHHh---cCCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeC
Confidence            34455555555555 4555544444   4555555555555 44445444322222255555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.63  E-value=1.6e-05  Score=76.46  Aligned_cols=36  Identities=14%  Similarity=0.079  Sum_probs=15.7

Q ss_pred             cccceeeccccccccccccccccccCCCcceEeecCC
Q 012933           59 SKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHC   95 (453)
Q Consensus        59 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c   95 (453)
                      ++|++|+++++. ++..........+++|++|++++|
T Consensus       101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n  136 (372)
T 3un9_A          101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN  136 (372)
T ss_dssp             SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS
T ss_pred             CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC
Confidence            456666665532 222111111223445556666555

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.62  E-value=9.7e-05  Score=70.61  Aligned_cols=88  Identities=16%  Similarity=0.290  Sum_probs=47.4

Q ss_pred             ccccceEEeccccchh--hhhcccccccccccccccccceeecccccccc----ccc----cccccccCCCcceEeecCC
Q 012933           26 PSSLVNLNVSRCDKIE--EIIRHVGEEAKENRIAFSKLKVLILDYLPTLT----SFC----LENYTLEFPSLERVSMTHC   95 (453)
Q Consensus        26 ~~~L~~L~L~~c~~l~--~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~~~----~~~~~~~l~~L~~L~l~~c   95 (453)
                      ...++.|.+..+. ..  .... ...........|++|+.|.+.+.. .+    .|.    .......+|+|+.|+++++
T Consensus       106 ~~~v~~L~lg~~~-~~~~~~~~-~~~~L~~s~~~l~~L~~L~l~~~~-~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~  182 (362)
T 2ra8_A          106 LPSLKQITIGXWG-YEGEDCSD-IADGIVENKEKFAHFEGLFWGDID-FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT  182 (362)
T ss_dssp             GGGCSEEEECCCC-SSSCCSHH-HHHHHHTTHHHHTTCSEEEECCCC-TTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred             chhcceEEEcccc-cCCCcHHH-HHHHHHHhhhhcchhhheeecCcc-hhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence            5567788777653 22  1000 000001123348899999886531 11    111    1122346799999999887


Q ss_pred             CCccccccCccCCCCcceEEeccc
Q 012933           96 PNMKTFSHGILSTPKLHKVQVTEK  119 (453)
Q Consensus        96 ~~l~~~~~~~~~~~~L~~L~l~~~  119 (453)
                      ..+. ++.  ...++|++|++..|
T Consensus       183 ~~l~-l~~--~~~~~L~~L~L~~~  203 (362)
T 2ra8_A          183 NNLS-IGK--KPRPNLKSLEIISG  203 (362)
T ss_dssp             BTCB-CCS--CBCTTCSEEEEECS
T ss_pred             CCce-ecc--ccCCCCcEEEEecC
Confidence            4443 222  23788999988754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.59  E-value=0.0063  Score=58.31  Aligned_cols=77  Identities=16%  Similarity=0.186  Sum_probs=33.3

Q ss_pred             CCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccC
Q 012933          319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLV  397 (453)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~  397 (453)
                      .+|+.+.+..  .++.+....|   ..+++|+.+.+.+ ..++.++.. +.++.+|+++.+.  ++++.+... .+.+|.
T Consensus       263 ~~l~~i~l~~--~i~~i~~~aF---~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp--~~l~~I~~~-aF~~C~  333 (379)
T 4h09_A          263 TALKTLNFYA--KVKTVPYLLC---SGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLP--TALKTIQVY-AFKNCK  333 (379)
T ss_dssp             TTCCEEEECC--CCSEECTTTT---TTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECC--TTCCEECTT-TTTTCT
T ss_pred             ehhccccccc--cceecccccc---ccccccccccccc-cccceehhhhhcCCCCCCEEEcC--ccccEEHHH-HhhCCC
Confidence            3444444432  2444444444   4555555555544 234444432 3444555555542  124443332 233444


Q ss_pred             CcceEEE
Q 012933          398 NLGRMMI  404 (453)
Q Consensus       398 ~L~~L~i  404 (453)
                      +|+++.+
T Consensus       334 ~L~~i~i  340 (379)
T 4h09_A          334 ALSTISY  340 (379)
T ss_dssp             TCCCCCC
T ss_pred             CCCEEEE
Confidence            4444444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.57  E-value=0.0056  Score=59.07  Aligned_cols=318  Identities=10%  Similarity=0.085  Sum_probs=166.4

Q ss_pred             ccCccc-ccceEEeccccchhhhhcccccccccccccccccceeecccc--ccccccccccccccCCCcceEeecCCCCc
Q 012933           22 QVGIPS-SLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYL--PTLTSFCLENYTLEFPSLERVSMTHCPNM   98 (453)
Q Consensus        22 ~~~~~~-~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~l~~L~~L~l~~c~~l   98 (453)
                      +|..+. .|+.+.+-.  .++.|...       +...+.+|+.+.+.+.  ..++.+.... ...+.+|+.+.+..  .+
T Consensus        58 aF~~~~~~L~sI~iP~--svt~Ig~~-------AF~~C~~L~~i~~~~n~p~~l~~Ig~~a-F~~c~~L~~i~~~~--~~  125 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPD--TVTEIGSN-------AFYNCTSLKRVTIQDNKPSCVKKIGRQA-FMFCSELTDIPILD--SV  125 (394)
T ss_dssp             TTTTCCSCCCEEEECT--TCCEECTT-------TTTTCTTCCEEEEGGGCCCCCCEECTTT-TTTCTTCCBCGGGT--TC
T ss_pred             hccCCCCcCEEEEECC--CeeEEhHH-------HhhCCccCceEeecCCCCCeeeEechhh-chhcccceeeccCC--cc
Confidence            344453 588888864  46666543       2234788888888652  2344443332 23456777666543  34


Q ss_pred             cccccC-ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCC
Q 012933           99 KTFSHG-ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNL  177 (453)
Q Consensus        99 ~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L  177 (453)
                      +.++.. +..+.+|+.+.+.....  .           +.  ......+.+|+.+.+.+  .+..+.... +.   ..+|
T Consensus       126 ~~I~~~aF~~c~~L~~i~lp~~~~--~-----------I~--~~~F~~c~~L~~i~~~~--~~~~I~~~a-F~---~~~l  184 (394)
T 4gt6_A          126 TEIDSEAFHHCEELDTVTIPEGVT--S-----------VA--DGMFSYCYSLHTVTLPD--SVTAIEERA-FT---GTAL  184 (394)
T ss_dssp             SEECTTTTTTCTTCCEEECCTTCC--E-----------EC--TTTTTTCTTCCEEECCT--TCCEECTTT-TT---TCCC
T ss_pred             ceehhhhhhhhcccccccccceee--e-----------ec--ccceecccccccccccc--eeeEecccc-cc---ccce
Confidence            444433 34577788888763210  0           00  01223456777777654  234433333 32   3568


Q ss_pred             cEEEecCCCCccccCchhHHhhcCCCcEEEeccCcc--chhhhcccccccccCCCCCCC---CccceeeeccCCCcceec
Q 012933          178 ARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDS--IEEVLHLEEQNADKEHRGPLF---PKLYGLRLIDLPKLKRFC  252 (453)
Q Consensus       178 ~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~--l~~~~~~~~~~~~~~~~~~~~---~~L~~L~L~~~~~l~~~~  252 (453)
                      +++.+...  .+.. ....+..+.+++.........  +..... .. ..........+   ..+..+.+  ...++.+ 
T Consensus       185 ~~i~ip~~--~~~i-~~~af~~c~~l~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~i--p~~v~~i-  256 (394)
T 4gt6_A          185 TQIHIPAK--VTRI-GTNAFSECFALSTITSDSESYPAIDNVLY-EK-SANGDYALIRYPSQREDPAFKI--PNGVARI-  256 (394)
T ss_dssp             SEEEECTT--CCEE-CTTTTTTCTTCCEEEECCSSSCBSSSCEE-EE-CTTSCEEEEECCTTCCCSEEEC--CTTEEEE-
T ss_pred             eEEEECCc--cccc-ccchhhhccccceecccccccccccceee-cc-cccccccccccccccccceEEc--CCcceEc-
Confidence            88887652  2222 334466677777766543211  111000 00 00000000000   12222222  1223333 


Q ss_pred             cCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCc
Q 012933          253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV  332 (453)
Q Consensus       253 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l  332 (453)
                       ....+..+.+|+.+.+..  .+..++...  +..+.+|+.+.+.+.  +.   .+.  -......++|+.+.|.+  .+
T Consensus       257 -~~~aF~~c~~L~~i~lp~--~~~~I~~~a--F~~c~~L~~i~l~~~--i~---~I~--~~aF~~c~~L~~i~lp~--~v  322 (394)
T 4gt6_A          257 -ETHAFDSCAYLASVKMPD--SVVSIGTGA--FMNCPALQDIEFSSR--IT---ELP--ESVFAGCISLKSIDIPE--GI  322 (394)
T ss_dssp             -CTTTTTTCSSCCEEECCT--TCCEECTTT--TTTCTTCCEEECCTT--CC---EEC--TTTTTTCTTCCEEECCT--TC
T ss_pred             -ccceeeecccccEEeccc--ccceecCcc--cccccccccccCCCc--cc---ccC--ceeecCCCCcCEEEeCC--cc
Confidence             234677788888888753  334444443  566667777776532  11   000  01123457899999975  48


Q ss_pred             ceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccCCcceEEE
Q 012933          333 QHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMI  404 (453)
Q Consensus       333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i  404 (453)
                      +.+....|   .++.+|+++.+..  .++.+... +.++++|+.+.+.+..  ....   .+..+.+|+.+.+
T Consensus       323 ~~I~~~aF---~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~--~~~~---~~~~~~~L~~i~i  385 (394)
T 4gt6_A          323 TQILDDAF---AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR--SQWN---AISTDSGLQNLPV  385 (394)
T ss_dssp             CEECTTTT---TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH--HHHH---TCBCCCCC-----
T ss_pred             cEehHhHh---hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce--eehh---hhhccCCCCEEEe
Confidence            88998888   8999999999965  47777764 6788999999986532  1111   1234466666655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.86  E-value=0.00031  Score=67.49  Aligned_cols=84  Identities=12%  Similarity=0.267  Sum_probs=49.2

Q ss_pred             ccccceEEeccccchhhh-hcccccccccccccccccceeeccccccccccccccc---c-ccCCCcceEeecCCCCccc
Q 012933           26 PSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY---T-LEFPSLERVSMTHCPNMKT  100 (453)
Q Consensus        26 ~~~L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~---~-~~l~~L~~L~l~~c~~l~~  100 (453)
                      .++|+.|+|++|. ++.. ...       ....+++|++|+++++ .++.......   . ...++|++|++++|. ++.
T Consensus       100 ~~~L~~L~Ls~n~-l~~~~~~~-------l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~  169 (372)
T 3un9_A          100 RHALDEVNLASCQ-LDPAGLRT-------LLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTA  169 (372)
T ss_dssp             SSCEEEEECTTCC-CCHHHHHH-------THHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHH
T ss_pred             CCCceEEEecCCC-CCHHHHHH-------HHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CCh
Confidence            3688899998873 4322 111       2223678999999985 3443322211   1 235788999998874 442


Q ss_pred             -----cccCccCCCCcceEEeccc
Q 012933          101 -----FSHGILSTPKLHKVQVTEK  119 (453)
Q Consensus       101 -----~~~~~~~~~~L~~L~l~~~  119 (453)
                           ++..+...++|++|++++|
T Consensus       170 ~~~~~l~~~L~~~~~L~~L~Ls~N  193 (372)
T 3un9_A          170 AGVAVLMEGLAGNTSVTHLSLLHT  193 (372)
T ss_dssp             HHHHHHHHHHHTCSSCCEEECTTS
T ss_pred             HHHHHHHHHHhcCCCcCEEeCCCC
Confidence                 3333345566666666643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.79  E-value=0.12  Score=49.28  Aligned_cols=80  Identities=13%  Similarity=0.084  Sum_probs=61.2

Q ss_pred             cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccc
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSES  395 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~  395 (453)
                      ...+|+.+.+.+  .++.+....|   ..+.+|+.+.+..  .++.++.. +..+++|+++.+.+ ..++.+... .+.+
T Consensus       238 ~~~~L~~i~lp~--~v~~I~~~aF---~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~-aF~~  308 (379)
T 4h09_A          238 GMKALDEIAIPK--NVTSIGSFLL---QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPR-VFMD  308 (379)
T ss_dssp             TCSSCCEEEECT--TCCEECTTTT---TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTT-TTTT
T ss_pred             CCccceEEEcCC--CccEeCcccc---ceeehhccccccc--cceeccccccccccccccccccc-cccceehhh-hhcC
Confidence            346788888865  4788888888   7899999999865  57777764 67889999999965 457777654 5567


Q ss_pred             cCCcceEEEc
Q 012933          396 LVNLGRMMIA  405 (453)
Q Consensus       396 l~~L~~L~i~  405 (453)
                      |.+|+.+++.
T Consensus       309 c~~L~~i~lp  318 (379)
T 4h09_A          309 CVKLSSVTLP  318 (379)
T ss_dssp             CTTCCEEECC
T ss_pred             CCCCCEEEcC
Confidence            8899998884

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.83  E-value=0.0089  Score=50.99  Aligned_cols=47  Identities=11%  Similarity=0.007  Sum_probs=23.8

Q ss_pred             HHHHhhcCCCCccEEEE--eeCCCCcccccCCCC--CcCccCCCcEEEecCCC
Q 012933          138 KCYEEMIGFRDMEYLQL--SYFPHLKEIWHGQAL--PVSFFNNLARLVVDDCT  186 (453)
Q Consensus       138 ~~~~~~~~~~~L~~L~l--~~~~~l~~~~~~~~l--~~~~l~~L~~L~l~~c~  186 (453)
                      .+...+...+.|++|++  +++. +.+..... +  .....++|++|+++++.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~-l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQP-LGNNVEME-IANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSC-CCHHHHHH-HHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCceEEEecCCCCC-CCHHHHHH-HHHHHHhCCCcCEEeccCCC
Confidence            34455555666777777  4444 43211000 0  00224678888887754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.55  E-value=0.025  Score=48.12  Aligned_cols=117  Identities=12%  Similarity=0.080  Sum_probs=60.2

Q ss_pred             cCCCcceEeecCCCCcc-----ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeC
Q 012933           83 EFPSLERVSMTHCPNMK-----TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYF  157 (453)
Q Consensus        83 ~l~~L~~L~l~~c~~l~-----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  157 (453)
                      ..+.|++|++++|..+.     .+...+...++|++|++++|.-      .    ......+...+...++|++|+++++
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i------~----~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS------N----DPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC------C----HHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCC------C----hHHHHHHHHHHHhCCCcCEEECcCC
Confidence            45666666666653343     1333334456666666665421      0    1112234445555677888888887


Q ss_pred             CCCcccccCC-CCCcCccCCCcEEEe--cCCCCccccC---chhHHhhcCCCcEEEeccC
Q 012933          158 PHLKEIWHGQ-ALPVSFFNNLARLVV--DDCTNMSSAI---PANLLRCLNNLQWLEVRNC  211 (453)
Q Consensus       158 ~~l~~~~~~~-~l~~~~l~~L~~L~l--~~c~~l~~~~---~~~~l~~l~~L~~L~l~~~  211 (453)
                      . +.+..... .-.....++|++|++  +++ .+....   -...+...++|++|+++++
T Consensus       104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          104 F-ISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             C-CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             c-CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            6 33211000 000133567888888  544 333211   1123455678888888775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.46  E-value=0.01  Score=53.78  Aligned_cols=89  Identities=12%  Similarity=0.047  Sum_probs=47.9

Q ss_pred             ccccceeeccccccccccccc-cccccCCCcceEeecCCCCccccccCccCCC--CcceEEeccccccccccccCCccch
Q 012933           58 FSKLKVLILDYLPTLTSFCLE-NYTLEFPSLERVSMTHCPNMKTFSHGILSTP--KLHKVQVTEKEEGELHHWEGNKLNS  134 (453)
Q Consensus        58 ~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~--~L~~L~l~~~~~l~~~~~~~~~~~~  134 (453)
                      +++|+.|++++ ++++.+... .....+++|+.|+++++ +++.+ ..+..+.  +|+.|++.+++--      +. +..
T Consensus       169 l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~------~~-~~~  238 (267)
T 3rw6_A          169 IPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLC------DT-FRD  238 (267)
T ss_dssp             CTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTG------GG-CSS
T ss_pred             CCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCc------cc-cCc
Confidence            77888888887 445554321 22346788888888775 35543 1223333  7777777764311      00 000


Q ss_pred             hHHHHHHhhcCCCCccEEEEee
Q 012933          135 TIQKCYEEMIGFRDMEYLQLSY  156 (453)
Q Consensus       135 ~~~~~~~~~~~~~~L~~L~l~~  156 (453)
                      ...-....+..+++|+.|+-..
T Consensus       239 ~~~y~~~il~~~P~L~~LDg~~  260 (267)
T 3rw6_A          239 QSTYISAIRERFPKLLRLDGHE  260 (267)
T ss_dssp             HHHHHHHHHHHCTTCCEESSCB
T ss_pred             chhHHHHHHHHCcccCeECCcC
Confidence            0111123455578888876443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.25  E-value=0.0081  Score=54.39  Aligned_cols=60  Identities=23%  Similarity=0.205  Sum_probs=37.2

Q ss_pred             cCCCcCEEeecCCCCcceecc--cCCcccccCCCccceeeccCCCccccCCCCCCCC--CCCEEecccCc
Q 012933          317 SFPRLRWLELSGLHKVQHLWK--ENDESNKAFANLESLEISECSKLQKLVPPSWHLE--NLEALEVSKCH  382 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~--~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~--~L~~L~l~~c~  382 (453)
                      .+|+|++|+++++ .++.+..  ..+   ..+++|+.|++++ +.++.+.. +..+.  +|++|.+.+.+
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~---~~l~~L~~L~Ls~-N~i~~~~~-l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIV---QKAPNLKILNLSG-NELKSERE-LDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHH---HHSTTCCEEECTT-SCCCSGGG-GGGGTTSCCSEEECTTST
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHH---hhCCCCCEEECCC-CccCCchh-hhhcccCCcceEEccCCc
Confidence            5778888888887 5665542  111   4677888888877 55655522 22222  77777777643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=83.47  E-value=1.8  Score=34.04  Aligned_cols=32  Identities=16%  Similarity=0.135  Sum_probs=14.9

Q ss_pred             CCCEEecccCcccccccCCCcccccCCcceEEEc
Q 012933          372 NLEALEVSKCHGLINLLTFSTSESLVNLGRMMIA  405 (453)
Q Consensus       372 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~  405 (453)
                      +|++|++++ ++++.++.. .+..+++|++|++.
T Consensus        32 ~l~~L~Ls~-N~l~~l~~~-~f~~l~~L~~L~L~   63 (130)
T 3rfe_A           32 DTTELVLTG-NNLTALPPG-LLDALPALRTAHLG   63 (130)
T ss_dssp             TCSEEECTT-SCCSSCCTT-TGGGCTTCCEEECC
T ss_pred             CCCEEECCC-CcCCccChh-hhhhccccCEEEec
Confidence            445555544 445544432 33344555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	453
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.73
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.67
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.55
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.47
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.45
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.4
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.38
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.36
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.31
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.31
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.27
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.22
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.19
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.17
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.12
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.11
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.1
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.55
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.48
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.19
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.12
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.09
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.78
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.71
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.5
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.83
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.67
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	90.93
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	88.7

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.7e-16  Score=152.36  Aligned_cols=84  Identities=13%  Similarity=0.126  Sum_probs=64.2

Q ss_pred             ccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933           20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK   99 (453)
Q Consensus        20 ~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~   99 (453)
                      ..+...+.+|++|+++++ .++.+. ++..        +++|++|+++++ ++++++.   ...+++|++|++++|. +.
T Consensus        37 ~~~~~~l~~l~~L~l~~~-~I~~l~-gl~~--------L~nL~~L~Ls~N-~l~~l~~---l~~L~~L~~L~L~~n~-i~  101 (384)
T d2omza2          37 TVSQTDLDQVTTLQADRL-GIKSID-GVEY--------LNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNNQ-IA  101 (384)
T ss_dssp             EECHHHHTTCCEEECCSS-CCCCCT-TGGG--------CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CC
T ss_pred             ccCHHHhCCCCEEECCCC-CCCCcc-cccc--------CCCCCEEeCcCC-cCCCCcc---ccCCcccccccccccc-cc
Confidence            334456789999999997 677663 3444        899999999994 5777653   5679999999999985 55


Q ss_pred             ccccCccCCCCcceEEeccc
Q 012933          100 TFSHGILSTPKLHKVQVTEK  119 (453)
Q Consensus       100 ~~~~~~~~~~~L~~L~l~~~  119 (453)
                      .++ .+..+++|+.+++.++
T Consensus       102 ~i~-~l~~l~~L~~L~~~~~  120 (384)
T d2omza2         102 DIT-PLANLTNLTGLTLFNN  120 (384)
T ss_dssp             CCG-GGTTCTTCCEEECCSS
T ss_pred             ccc-cccccccccccccccc
Confidence            554 3678999999999864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.3e-15  Score=146.06  Aligned_cols=298  Identities=16%  Similarity=0.198  Sum_probs=178.0

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ  137 (453)
Q Consensus        58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  137 (453)
                      +.+|++|+++++ +++.+   +....+++|++|+++++ +++.++. +..+++|++|+++++.-               .
T Consensus        43 l~~l~~L~l~~~-~I~~l---~gl~~L~nL~~L~Ls~N-~l~~l~~-l~~L~~L~~L~L~~n~i---------------~  101 (384)
T d2omza2          43 LDQVTTLQADRL-GIKSI---DGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQI---------------A  101 (384)
T ss_dssp             HTTCCEEECCSS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC---------------C
T ss_pred             hCCCCEEECCCC-CCCCc---cccccCCCCCEEeCcCC-cCCCCcc-ccCCccccccccccccc---------------c
Confidence            678999999984 35544   22568999999999997 5888764 78899999999997632               1


Q ss_pred             HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEE------------------------------------
Q 012933          138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLV------------------------------------  181 (453)
Q Consensus       138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~------------------------------------  181 (453)
                      .++ .+..+++|+.|+++++.. ..++...     ....+....                                    
T Consensus       102 ~i~-~l~~l~~L~~L~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (384)
T d2omza2         102 DIT-PLANLTNLTGLTLFNNQI-TDIDPLK-----NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL  174 (384)
T ss_dssp             CCG-GGTTCTTCCEEECCSSCC-CCCGGGT-----TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTC
T ss_pred             ccc-cccccccccccccccccc-ccccccc-----ccccccccccccccccccccccccccccccccccccchhhhhccc
Confidence            111 245678888888876652 2111111     001111111                                    


Q ss_pred             -------ecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccC
Q 012933          182 -------VDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF  254 (453)
Q Consensus       182 -------l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~  254 (453)
                             ...+.   . ........+++++.+.++++ .+..++...           ..++|++|.+.++. ++++   
T Consensus       175 ~~~~~~~~~~~~---~-~~~~~~~~l~~~~~l~l~~n-~i~~~~~~~-----------~~~~L~~L~l~~n~-l~~~---  234 (384)
T d2omza2         175 TTLERLDISSNK---V-SDISVLAKLTNLESLIATNN-QISDITPLG-----------ILTNLDELSLNGNQ-LKDI---  234 (384)
T ss_dssp             TTCCEEECCSSC---C-CCCGGGGGCTTCSEEECCSS-CCCCCGGGG-----------GCTTCCEEECCSSC-CCCC---
T ss_pred             cccccccccccc---c-ccccccccccccceeeccCC-ccCCCCccc-----------ccCCCCEEECCCCC-CCCc---
Confidence                   11100   0 01123456667777777664 233322211           22677888877663 4443   


Q ss_pred             CCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcce
Q 012933          255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH  334 (453)
Q Consensus       255 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~  334 (453)
                       ..+..+++|+.|++.++. +..++.    +..+++|+.|+++++.-..        ++....++.++.+.+.++ .++.
T Consensus       235 -~~l~~l~~L~~L~l~~n~-l~~~~~----~~~~~~L~~L~l~~~~l~~--------~~~~~~~~~l~~l~~~~n-~l~~  299 (384)
T d2omza2         235 -GTLASLTNLTDLDLANNQ-ISNLAP----LSGLTKLTELKLGANQISN--------ISPLAGLTALTNLELNEN-QLED  299 (384)
T ss_dssp             -GGGGGCTTCSEEECCSSC-CCCCGG----GTTCTTCSEEECCSSCCCC--------CGGGTTCTTCSEEECCSS-CCSC
T ss_pred             -chhhcccccchhccccCc-cCCCCc----ccccccCCEeeccCcccCC--------CCcccccccccccccccc-cccc
Confidence             356677888888887764 333322    4456678888777653211        122345667777777666 4444


Q ss_pred             ecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHH
Q 012933          335 LWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQII  414 (453)
Q Consensus       335 l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~  414 (453)
                      +..  +   ..+++++.|+++++ ++++++. +..+++|++|++++| ++++++.   ...+++|++|+++++. ++++ 
T Consensus       300 ~~~--~---~~~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~~n-~l~~l~~---l~~l~~L~~L~l~~N~-l~~l-  366 (384)
T d2omza2         300 ISP--I---SNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFANN-KVSDVSS---LANLTNINWLSAGHNQ-ISDL-  366 (384)
T ss_dssp             CGG--G---GGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSC-CCBC-
T ss_pred             ccc--c---chhcccCeEECCCC-CCCCCcc-cccCCCCCEEECCCC-CCCCChh---HcCCCCCCEEECCCCc-CCCC-
Confidence            332  2   57777888888774 5666643 566788888888775 6776642   4567888888887764 3221 


Q ss_pred             hhccCCccCCCceeccccchhhhhh
Q 012933          415 QLQVGEEAKDCNVFKELSCETMSKN  439 (453)
Q Consensus       415 ~~~~~~~~~~~~~~~~l~~l~l~~~  439 (453)
                              ..+..+++|+.|+++++
T Consensus       367 --------~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         367 --------TPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             --------GGGTTCTTCSEEECCCE
T ss_pred             --------hhhccCCCCCEeeCCCC
Confidence                    12456777787777764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.55  E-value=1e-13  Score=128.51  Aligned_cols=63  Identities=10%  Similarity=0.074  Sum_probs=39.5

Q ss_pred             cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-------CCCCCCCCEEecccCccccc
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-------SWHLENLEALEVSKCHGLIN  386 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-------~~~l~~L~~L~l~~c~~l~~  386 (453)
                      .+++|++|++++| .++.++.. +   ..+++|++|++++ +++++++..       ....++|+.|.+++. .++.
T Consensus       217 ~l~~L~~L~L~~N-~L~~lp~~-l---~~l~~L~~L~Ls~-N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N-~~~~  286 (305)
T d1xkua_         217 NTPHLRELHLNNN-KLVKVPGG-L---ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSN-PVQY  286 (305)
T ss_dssp             GSTTCCEEECCSS-CCSSCCTT-T---TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSS-SSCG
T ss_pred             ccccceeeecccc-cccccccc-c---ccccCCCEEECCC-CccCccChhhccCcchhcccCCCCEEECCCC-cCcc
Confidence            4567777777776 56666542 3   5677777777777 456666542       234577888888773 3443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.52  E-value=1.1e-12  Score=121.44  Aligned_cols=87  Identities=10%  Similarity=0.032  Sum_probs=72.8

Q ss_pred             ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCC----
Q 012933          316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFS----  391 (453)
Q Consensus       316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~----  391 (453)
                      ..++.+++|+++++ .+++++...+   ..+++|++|++++| +++.+|.++.++++|++|++++ +++++++...    
T Consensus       192 ~~~~~l~~L~~s~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~-N~i~~i~~~~f~~~  265 (305)
T d1xkua_         192 KGLNNLAKLGLSFN-SISAVDNGSL---ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPP  265 (305)
T ss_dssp             TTCTTCCEEECCSS-CCCEECTTTG---GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCS
T ss_pred             hccccccccccccc-cccccccccc---cccccceeeecccc-cccccccccccccCCCEEECCC-CccCccChhhccCc
Confidence            45678999999988 7888887777   78999999999995 7999999999999999999988 5798885432    


Q ss_pred             -cccccCCcceEEEcccc
Q 012933          392 -TSESLVNLGRMMIADCK  408 (453)
Q Consensus       392 -~~~~l~~L~~L~i~~C~  408 (453)
                       .....++|+.|++.+.+
T Consensus       266 ~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         266 GYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SCCTTSCCCSEEECCSSS
T ss_pred             chhcccCCCCEEECCCCc
Confidence             23456889999999887

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.4e-15  Score=135.29  Aligned_cols=124  Identities=19%  Similarity=0.229  Sum_probs=64.1

Q ss_pred             hhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccc
Q 012933          142 EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLE  221 (453)
Q Consensus       142 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~  221 (453)
                      ....+++|++|.+.++. +.+..... +  ..+++|++|++++|..+++..-..+...+++|++|++++|..+++.....
T Consensus        66 l~~~c~~L~~L~L~~~~-l~~~~~~~-l--~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~  141 (284)
T d2astb2          66 ILSQCSKLQNLSLEGLR-LSDPIVNT-L--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  141 (284)
T ss_dssp             HHTTBCCCSEEECTTCB-CCHHHHHH-H--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHHhCCCcccccccccC-CCcHHHHH-H--hcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchh
Confidence            34445666666666654 22111111 1  23567777777777766543222334567777777777776654421100


Q ss_pred             ccccccCCCCCCCCccceeeeccCC-CcceeccCCCcccCCCCccEEeeecCCCCce
Q 012933          222 EQNADKEHRGPLFPKLYGLRLIDLP-KLKRFCNFTGNIIELPELQHLTIQNCPDMET  277 (453)
Q Consensus       222 ~~~~~~~~~~~~~~~L~~L~L~~~~-~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~  277 (453)
                      ..       ....++|++|.+.+|. .+++. .......++|+|++|++++|..+++
T Consensus       142 ~~-------~~~~~~L~~L~l~~~~~~i~~~-~l~~l~~~~~~L~~L~L~~~~~itd  190 (284)
T d2astb2         142 AV-------AHVSETITQLNLSGYRKNLQKS-DLSTLVRRCPNLVHLDLSDSVMLKN  190 (284)
T ss_dssp             HH-------HHSCTTCCEEECCSCGGGSCHH-HHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred             hh-------cccccccchhhhcccccccccc-cccccccccccccccccccccCCCc
Confidence            00       0122567777777653 23321 0111234567777777777766554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.51  E-value=1.5e-14  Score=134.74  Aligned_cols=93  Identities=9%  Similarity=-0.084  Sum_probs=55.9

Q ss_pred             CcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc-e
Q 012933          256 GNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ-H  334 (453)
Q Consensus       256 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~-~  334 (453)
                      .....+++++.+++.++..-...+.    +..+++|+.|++++++-..   .   ..+.++.+++|++|+++++ +++ .
T Consensus       215 ~~~~~~~~l~~l~~~~~~l~~~~~~----~~~~~~L~~L~Ls~N~l~g---~---iP~~l~~L~~L~~L~Ls~N-~l~g~  283 (313)
T d1ogqa_         215 VLFGSDKNTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRNNRIYG---T---LPQGLTQLKFLHSLNVSFN-NLCGE  283 (313)
T ss_dssp             GGCCTTSCCSEEECCSSEECCBGGG----CCCCTTCCEEECCSSCCEE---C---CCGGGGGCTTCCEEECCSS-EEEEE
T ss_pred             ccccccccccccccccccccccccc----cccccccccccCccCeecc---c---CChHHhCCCCCCEEECcCC-ccccc
Confidence            4455666777777666543222221    3445577777776653211   0   1124567889999999988 455 4


Q ss_pred             ecccCCcccccCCCccceeeccCCCccccC
Q 012933          335 LWKENDESNKAFANLESLEISECSKLQKLV  364 (453)
Q Consensus       335 l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~  364 (453)
                      +|.  +   ..+++|+.+++.+++.+...|
T Consensus       284 iP~--~---~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         284 IPQ--G---GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCC--S---TTGGGSCGGGTCSSSEEESTT
T ss_pred             CCC--c---ccCCCCCHHHhCCCccccCCC
Confidence            542  2   678889999988866555443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.47  E-value=1.7e-13  Score=127.43  Aligned_cols=252  Identities=13%  Similarity=0.090  Sum_probs=141.6

Q ss_pred             CCcceEeecCCCCcc--ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcc
Q 012933           85 PSLERVSMTHCPNMK--TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE  162 (453)
Q Consensus        85 ~~L~~L~l~~c~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  162 (453)
                      .++++|+++++.--.  .+|..++++++|++|+++++.+             ..+.+|.++..+++|++|+++++. +..
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~-------------l~g~iP~~i~~L~~L~~L~Ls~N~-l~~  115 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-------------LVGPIPPAIAKLTQLHYLYITHTN-VSG  115 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-------------EESCCCGGGGGCTTCSEEEEEEEC-CEE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccc-------------cccccccccccccccchhhhcccc-ccc
Confidence            468888888764222  4777888888888888886432             223456677778888888888876 333


Q ss_pred             cccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCcc-ceee
Q 012933          163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKL-YGLR  241 (453)
Q Consensus       163 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L-~~L~  241 (453)
                      +.... +  ..++.|+.++++++... ...|.. +..+++++.++++++.....++..         .... ..+ +.+.
T Consensus       116 ~~~~~-~--~~~~~L~~l~l~~N~~~-~~~p~~-l~~l~~L~~l~l~~n~l~~~ip~~---------~~~l-~~l~~~l~  180 (313)
T d1ogqa_         116 AIPDF-L--SQIKTLVTLDFSYNALS-GTLPPS-ISSLPNLVGITFDGNRISGAIPDS---------YGSF-SKLFTSMT  180 (313)
T ss_dssp             ECCGG-G--GGCTTCCEEECCSSEEE-SCCCGG-GGGCTTCCEEECCSSCCEEECCGG---------GGCC-CTTCCEEE
T ss_pred             ccccc-c--cchhhhccccccccccc-ccCchh-hccCcccceeeccccccccccccc---------cccc-cccccccc
Confidence            22221 1  44778888888876433 333443 778888888888876433333220         1112 333 4454


Q ss_pred             eccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCc
Q 012933          242 LIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRL  321 (453)
Q Consensus       242 L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L  321 (453)
                      +.+. .++..  .+..+..+. ...+++..+......+..   ...+++++.+++.++.-.       ..+++++.+++|
T Consensus       181 ~~~n-~l~~~--~~~~~~~l~-~~~l~l~~~~~~~~~~~~---~~~~~~l~~l~~~~~~l~-------~~~~~~~~~~~L  246 (313)
T d1ogqa_         181 ISRN-RLTGK--IPPTFANLN-LAFVDLSRNMLEGDASVL---FGSDKNTQKIHLAKNSLA-------FDLGKVGLSKNL  246 (313)
T ss_dssp             CCSS-EEEEE--CCGGGGGCC-CSEEECCSSEEEECCGGG---CCTTSCCSEEECCSSEEC-------CBGGGCCCCTTC
T ss_pred             cccc-ccccc--ccccccccc-cccccccccccccccccc---cccccccccccccccccc-------cccccccccccc
Confidence            4433 34432  123333333 334666554433333322   445556666666655211       122344556677


Q ss_pred             CEEeecCCCCcc-eecccCCcccccCCCccceeeccCCCcc-ccCCCCCCCCCCCEEecccCccccc
Q 012933          322 RWLELSGLHKVQ-HLWKENDESNKAFANLESLEISECSKLQ-KLVPPSWHLENLEALEVSKCHGLIN  386 (453)
Q Consensus       322 ~~L~l~~~~~l~-~l~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~  386 (453)
                      +.|++++| +++ .+|.. +   ..+++|++|++++ +.++ .+|. ..++++|+.+.+++.+.+..
T Consensus       247 ~~L~Ls~N-~l~g~iP~~-l---~~L~~L~~L~Ls~-N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         247 NGLDLRNN-RIYGTLPQG-L---TQLKFLHSLNVSF-NNLCGEIPQ-GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CEEECCSS-CCEECCCGG-G---GGCTTCCEEECCS-SEEEEECCC-STTGGGSCGGGTCSSSEEES
T ss_pred             ccccCccC-eecccCChH-H---hCCCCCCEEECcC-CcccccCCC-cccCCCCCHHHhCCCccccC
Confidence            77777766 444 34433 2   5667777777776 3444 4553 34566666666666544444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.45  E-value=5.3e-12  Score=118.67  Aligned_cols=135  Identities=16%  Similarity=0.125  Sum_probs=79.5

Q ss_pred             cccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCcc
Q 012933           27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL  106 (453)
Q Consensus        27 ~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  106 (453)
                      .++++|+|+++ .++.+|+.           .++|++|++++ .+++.++.     .+.+|++|++.++ +++.++.   
T Consensus        38 ~~l~~LdLs~~-~L~~lp~~-----------~~~L~~L~Ls~-N~l~~lp~-----~~~~L~~L~l~~n-~l~~l~~---   95 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSLPEL-----------PPHLESLVASC-NSLTELPE-----LPQSLKSLLVDNN-NLKALSD---   95 (353)
T ss_dssp             HTCSEEECTTS-CCSCCCSC-----------CTTCSEEECCS-SCCSSCCC-----CCTTCCEEECCSS-CCSCCCS---
T ss_pred             cCCCEEEeCCC-CCCCCCCC-----------CCCCCEEECCC-CCCccccc-----chhhhhhhhhhhc-ccchhhh---
Confidence            46788888886 57777752           56788888875 56766643     2467888888875 3555442   


Q ss_pred             CCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCC
Q 012933          107 STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT  186 (453)
Q Consensus       107 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~  186 (453)
                      -.+.|++|+++++. +              ..++. ...+++|++|++.++. +...+       ...+.+..+.+.++.
T Consensus        96 lp~~L~~L~L~~n~-l--------------~~lp~-~~~l~~L~~L~l~~~~-~~~~~-------~~~~~l~~l~~~~~~  151 (353)
T d1jl5a_          96 LPPLLEYLGVSNNQ-L--------------EKLPE-LQNSSFLKIIDVDNNS-LKKLP-------DLPPSLEFIAAGNNQ  151 (353)
T ss_dssp             CCTTCCEEECCSSC-C--------------SSCCC-CTTCTTCCEEECCSSC-CSCCC-------CCCTTCCEEECCSSC
T ss_pred             hccccccccccccc-c--------------ccccc-hhhhccceeecccccc-ccccc-------cccccccchhhcccc
Confidence            12458888887542 1              12221 2346778888877665 22211       123566666666544


Q ss_pred             CccccCchhHHhhcCCCcEEEeccC
Q 012933          187 NMSSAIPANLLRCLNNLQWLEVRNC  211 (453)
Q Consensus       187 ~l~~~~~~~~l~~l~~L~~L~l~~~  211 (453)
                      ....    ..+..++.++.+.+.++
T Consensus       152 ~~~~----~~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         152 LEEL----PELQNLPFLTAIYADNN  172 (353)
T ss_dssp             CSSC----CCCTTCTTCCEEECCSS
T ss_pred             cccc----ccccccccceecccccc
Confidence            3221    12455677777777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.5e-12  Score=115.52  Aligned_cols=175  Identities=16%  Similarity=0.076  Sum_probs=107.4

Q ss_pred             cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (453)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~  253 (453)
                      .+++++|+++++ .++.+ +...+..+++|++|+++++ .++.++..          . .+++|++|+++++. ++..  
T Consensus        30 p~~l~~L~Ls~N-~i~~l-~~~~f~~l~~L~~L~L~~N-~l~~l~~~----------~-~l~~L~~L~Ls~N~-l~~~--   92 (266)
T d1p9ag_          30 PKDTTILHLSEN-LLYTF-SLATLMPYTRLTQLNLDRA-ELTKLQVD----------G-TLPVLGTLDLSHNQ-LQSL--   92 (266)
T ss_dssp             CTTCCEEECTTS-CCSEE-EGGGGTTCTTCCEEECTTS-CCCEEECC----------S-CCTTCCEEECCSSC-CSSC--
T ss_pred             CcCCCEEECcCC-cCCCc-CHHHhhccccccccccccc-cccccccc----------c-cccccccccccccc-cccc--
Confidence            468999999985 45554 4455788999999999886 45554321          1 23788888888763 4442  


Q ss_pred             CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc
Q 012933          254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ  333 (453)
Q Consensus       254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~  333 (453)
                       +..+..+++|+.|+++++... .++...  ...+.+++.|++.++..-.+..      .....+++++.++++++ .++
T Consensus        93 -~~~~~~l~~L~~L~l~~~~~~-~~~~~~--~~~l~~l~~L~l~~n~l~~l~~------~~~~~l~~l~~l~l~~N-~l~  161 (266)
T d1p9ag_          93 -PLLGQTLPALTVLDVSFNRLT-SLPLGA--LRGLGELQELYLKGNELKTLPP------GLLTPTPKLEKLSLANN-NLT  161 (266)
T ss_dssp             -CCCTTTCTTCCEEECCSSCCC-CCCSST--TTTCTTCCEEECTTSCCCCCCT------TTTTTCTTCCEEECTTS-CCS
T ss_pred             -ccccccccccccccccccccc-eeeccc--cccccccccccccccccceecc------ccccccccchhcccccc-ccc
Confidence             356677888888888876533 333322  4455566666666542211100      11224566666666666 566


Q ss_pred             eecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933          334 HLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK  380 (453)
Q Consensus       334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  380 (453)
                      .++.+.|   ..+++|++|++++ +.++.+|.++..+++|+.|.+++
T Consensus       162 ~~~~~~~---~~l~~L~~L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         162 ELPAGLL---NGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             CCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCS
T ss_pred             ccCcccc---ccccccceeeccc-CCCcccChhHCCCCCCCEEEecC
Confidence            6665555   5666666666666 45666666666666666666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.2e-12  Score=115.54  Aligned_cols=203  Identities=17%  Similarity=0.132  Sum_probs=143.7

Q ss_pred             cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (453)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~  253 (453)
                      .+++++|+++++ +++.+ +...+..+++|++|+++++ .+..+...        ... ..+.++++.......++.+  
T Consensus        31 p~~~~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~ls~n-~l~~i~~~--------~~~-~~~~~~~l~~~~~~~~~~l--   96 (284)
T d1ozna_          31 PAASQRIFLHGN-RISHV-PAASFRACRNLTILWLHSN-VLARIDAA--------AFT-GLALLEQLDLSDNAQLRSV--   96 (284)
T ss_dssp             CTTCSEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSS-CCCEECTT--------TTT-TCTTCCEEECCSCTTCCCC--
T ss_pred             CCCCCEEECcCC-cCCCC-CHHHhhccccccccccccc-cccccccc--------ccc-ccccccccccccccccccc--
Confidence            467888999885 46655 4455788889999998875 34433220        111 2266777777666666665  


Q ss_pred             CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc
Q 012933          254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ  333 (453)
Q Consensus       254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~  333 (453)
                      .+..+.++++|+.|+++++.. ..++...  .....+|+.+++.++.--.++      ...+..+++|++|+++++ .++
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~~-~~~~~~~--~~~~~~L~~l~l~~N~l~~i~------~~~f~~~~~L~~L~l~~N-~l~  166 (284)
T d1ozna_          97 DPATFHGLGRLHTLHLDRCGL-QELGPGL--FRGLAALQYLYLQDNALQALP------DDTFRDLGNLTHLFLHGN-RIS  166 (284)
T ss_dssp             CTTTTTTCTTCCEEECTTSCC-CCCCTTT--TTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSS-CCC
T ss_pred             cchhhcccccCCEEecCCccc-ccccccc--cchhcccchhhhccccccccC------hhHhccccchhhcccccC-ccc
Confidence            245678889999999988653 3333332  556678888888876321111      012346789999999999 789


Q ss_pred             eecccCCcccccCCCccceeeccCCCcccc-CCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcc
Q 012933          334 HLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIAD  406 (453)
Q Consensus       334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~  406 (453)
                      .++...|   ..+++|+++.+.++ .++.+ |..+..+++|++|++++ +++..++.. ....+++|++|++++
T Consensus       167 ~l~~~~f---~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~-N~i~~~~~~-~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         167 SVPERAF---RGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTE-ALAPLRALQYLRLND  234 (284)
T ss_dssp             EECTTTT---TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCHH-HHTTCTTCCEEECCS
T ss_pred             ccchhhh---ccccccchhhhhhc-cccccChhHhhhhhhcccccccc-ccccccccc-ccccccccCEEEecC
Confidence            9988888   79999999999995 45555 56788999999999987 667777653 456789999999975

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.2e-13  Score=123.69  Aligned_cols=217  Identities=19%  Similarity=0.166  Sum_probs=138.8

Q ss_pred             cccCcccccceEEeccccchhh-hhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933           21 FQVGIPSSLVNLNVSRCDKIEE-IIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK   99 (453)
Q Consensus        21 ~~~~~~~~L~~L~L~~c~~l~~-i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~   99 (453)
                      +.......|++|++++|..... +..-        ...+++|++|++++|. +++.... ....+++|++|++++|.+++
T Consensus        40 ~~~~~~~~L~~LdLs~~~i~~~~l~~l--------~~~c~~L~~L~L~~~~-l~~~~~~-~l~~~~~L~~L~Ls~c~~it  109 (284)
T d2astb2          40 AEHFSPFRVQHMDLSNSVIEVSTLHGI--------LSQCSKLQNLSLEGLR-LSDPIVN-TLAKNSNLVRLNLSGCSGFS  109 (284)
T ss_dssp             CSCCCCBCCCEEECTTCEECHHHHHHH--------HTTBCCCSEEECTTCB-CCHHHHH-HHTTCTTCSEEECTTCBSCC
T ss_pred             hhhccCCCCCEEECCCCccCHHHHHHH--------HHhCCCcccccccccC-CCcHHHH-HHhcCCCCcCcccccccccc
Confidence            3344567899999999853332 2222        2238999999999974 4332222 24568999999999999887


Q ss_pred             c--cccCccCCCCcceEEeccccccccccccCCccchhHHHHHHh-hcCCCCccEEEEeeCC-CCcccccCCCCCcCccC
Q 012933          100 T--FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE-MIGFRDMEYLQLSYFP-HLKEIWHGQALPVSFFN  175 (453)
Q Consensus       100 ~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~-~l~~~~~~~~l~~~~l~  175 (453)
                      +  +..-...+++|++|++++|..+.            ...+... ...+++|+.|+++++. .+.+..... +. ..+|
T Consensus       110 d~~l~~l~~~~~~L~~L~ls~c~~~~------------~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~-l~-~~~~  175 (284)
T d2astb2         110 EFALQTLLSSCSRLDELNLSWCFDFT------------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LV-RRCP  175 (284)
T ss_dssp             HHHHHHHHHHCTTCCEEECCCCTTCC------------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HH-HHCT
T ss_pred             ccccchhhHHHHhccccccccccccc------------cccchhhhcccccccchhhhcccccccccccccc-cc-cccc
Confidence            4  22223458999999999886532            1222222 2335789999998864 233211111 11 3589


Q ss_pred             CCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCC
Q 012933          176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT  255 (453)
Q Consensus       176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~  255 (453)
                      +|++|++++|..+++.. ...+..+++|++|++++|..+++...    ..+    ..+ |+|++|++.+|-.-..+   .
T Consensus       176 ~L~~L~L~~~~~itd~~-~~~l~~~~~L~~L~L~~C~~i~~~~l----~~L----~~~-~~L~~L~l~~~~~d~~l---~  242 (284)
T d2astb2         176 NLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETL----LEL----GEI-PTLKTLQVFGIVPDGTL---Q  242 (284)
T ss_dssp             TCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGG----GGG----GGC-TTCCEEECTTSSCTTCH---H
T ss_pred             cccccccccccCCCchh-hhhhcccCcCCEEECCCCCCCChHHH----HHH----hcC-CCCCEEeeeCCCCHHHH---H
Confidence            99999999998887653 34477899999999999988876422    111    123 89999999998322221   1


Q ss_pred             CcccCCCCccEEeeecCCCCcee
Q 012933          256 GNIIELPELQHLTIQNCPDMETF  278 (453)
Q Consensus       256 ~~~~~l~~L~~L~l~~c~~l~~~  278 (453)
                      .....+|+|+   + +|..++..
T Consensus       243 ~l~~~lp~L~---i-~~~~ls~~  261 (284)
T d2astb2         243 LLKEALPHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             HHHHHSTTSE---E-SCCCSCCT
T ss_pred             HHHHhCcccc---c-cCccCCCC
Confidence            1223466665   3 45555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=1.3e-11  Score=108.88  Aligned_cols=98  Identities=26%  Similarity=0.314  Sum_probs=50.2

Q ss_pred             cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (453)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~  253 (453)
                      .+.++.+.+.++... ..   ..+...++|+.|.+.++. +.+....          . .+++|++|+++++ .++++  
T Consensus       128 ~~~~~~l~~~~~~~~-~~---~~~~~~~~L~~L~l~~n~-~~~~~~l----------~-~l~~L~~L~Ls~n-~l~~l--  188 (227)
T d1h6ua2         128 LSNLQVLYLDLNQIT-NI---SPLAGLTNLQYLSIGNAQ-VSDLTPL----------A-NLSKLTTLKADDN-KISDI--  188 (227)
T ss_dssp             CTTCCEEECCSSCCC-CC---GGGGGCTTCCEEECCSSC-CCCCGGG----------T-TCTTCCEEECCSS-CCCCC--
T ss_pred             ccchhhhhchhhhhc-hh---hhhccccccccccccccc-cccchhh----------c-ccccceecccCCC-ccCCC--
Confidence            455666666554321 11   124456666666665542 2221110          1 1266666666665 34443  


Q ss_pred             CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccc
Q 012933          254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLT  297 (453)
Q Consensus       254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~  297 (453)
                        ..+.++++|+.|++++| ++++++.    ++.+++|+.|+++
T Consensus       189 --~~l~~l~~L~~L~Ls~N-~lt~i~~----l~~l~~L~~L~ls  225 (227)
T d1h6ua2         189 --SPLASLPNLIEVHLKNN-QISDVSP----LANTSNLFIVTLT  225 (227)
T ss_dssp             --GGGGGCTTCCEEECTTS-CCCBCGG----GTTCTTCCEEEEE
T ss_pred             --hhhcCCCCCCEEECcCC-cCCCCcc----cccCCCCCEEEee
Confidence              23556666777777665 4555432    4455666666664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=1.4e-11  Score=108.62  Aligned_cols=187  Identities=18%  Similarity=0.223  Sum_probs=104.1

Q ss_pred             cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (453)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~  253 (453)
                      +.+|++|++.+|. ++++ +  .+..+++|+.|+++++ .+..+....           .+++|+++.+.++. ++.+  
T Consensus        40 l~~L~~L~l~~~~-i~~l-~--~l~~l~~L~~L~ls~n-~i~~~~~l~-----------~l~~l~~l~~~~n~-~~~i--  100 (227)
T d1h6ua2          40 LDGITTLSAFGTG-VTTI-E--GVQYLNNLIGLELKDN-QITDLAPLK-----------NLTKITELELSGNP-LKNV--  100 (227)
T ss_dssp             HHTCCEEECTTSC-CCCC-T--TGGGCTTCCEEECCSS-CCCCCGGGT-----------TCCSCCEEECCSCC-CSCC--
T ss_pred             cCCcCEEECCCCC-CCcc-h--hHhcCCCCcEeecCCc-eeecccccc-----------cccccccccccccc-cccc--
Confidence            4556666666553 3332 1  2455666666666554 233221111           12556666655442 2332  


Q ss_pred             CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc
Q 012933          254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ  333 (453)
Q Consensus       254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~  333 (453)
                        ..+..+++|+.+.++++......+     +...+.++.+.+.++....        .......++|+.|.++++ .+.
T Consensus       101 --~~l~~l~~L~~l~l~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~n-~~~  164 (227)
T d1h6ua2         101 --SAIAGLQSIKTLDLTSTQITDVTP-----LAGLSNLQVLYLDLNQITN--------ISPLAGLTNLQYLSIGNA-QVS  164 (227)
T ss_dssp             --GGGTTCTTCCEEECTTSCCCCCGG-----GTTCTTCCEEECCSSCCCC--------CGGGGGCTTCCEEECCSS-CCC
T ss_pred             --ccccccccccccccccccccccch-----hccccchhhhhchhhhhch--------hhhhcccccccccccccc-ccc
Confidence              234556666666666554322111     2223345555554432211        012235578888888777 444


Q ss_pred             eecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcc
Q 012933          334 HLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIAD  406 (453)
Q Consensus       334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~  406 (453)
                      +...  +   +++++|+.|++++| ++++++. +.++++|++|++++| ++++++.   .+++++|++|++++
T Consensus       165 ~~~~--l---~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~---l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         165 DLTP--L---ANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCGG--G---TTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEE
T ss_pred             cchh--h---cccccceecccCCC-ccCCChh-hcCCCCCCEEECcCC-cCCCCcc---cccCCCCCEEEeeC
Confidence            4332  2   67788888888885 6777654 567888888888885 6887753   45778888888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.6e-12  Score=113.66  Aligned_cols=196  Identities=16%  Similarity=0.108  Sum_probs=143.6

Q ss_pred             CCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccC
Q 012933          175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF  254 (453)
Q Consensus       175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~  254 (453)
                      ..+.+++.++ .+++.+ |.. +  .+++++|+++++ .++.++...        .. .+++|++|++.++ .++.++  
T Consensus        10 ~~~~~v~C~~-~~L~~i-P~~-l--p~~l~~L~Ls~N-~i~~l~~~~--------f~-~l~~L~~L~L~~N-~l~~l~--   71 (266)
T d1p9ag_          10 ASHLEVNCDK-RNLTAL-PPD-L--PKDTTILHLSEN-LLYTFSLAT--------LM-PYTRLTQLNLDRA-ELTKLQ--   71 (266)
T ss_dssp             TTCCEEECTT-SCCSSC-CSC-C--CTTCCEEECTTS-CCSEEEGGG--------GT-TCTTCCEEECTTS-CCCEEE--
T ss_pred             CCCeEEEccC-CCCCee-CcC-c--CcCCCEEECcCC-cCCCcCHHH--------hh-ccccccccccccc-cccccc--
Confidence            4555666555 357665 544 2  258999999985 566554311        11 2389999999987 577763  


Q ss_pred             CCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcce
Q 012933          255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH  334 (453)
Q Consensus       255 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~  334 (453)
                        .+..+++|+.|+++++. +...+..   +..+++|+.|+++++....+.      ......++++++|+++++ .++.
T Consensus        72 --~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~l~~L~~L~l~~~~~~~~~------~~~~~~l~~l~~L~l~~n-~l~~  138 (266)
T d1p9ag_          72 --VDGTLPVLGTLDLSHNQ-LQSLPLL---GQTLPALTVLDVSFNRLTSLP------LGALRGLGELQELYLKGN-ELKT  138 (266)
T ss_dssp             --CCSCCTTCCEEECCSSC-CSSCCCC---TTTCTTCCEEECCSSCCCCCC------SSTTTTCTTCCEEECTTS-CCCC
T ss_pred             --ccccccccccccccccc-ccccccc---cccccccccccccccccceee------cccccccccccccccccc-ccce
Confidence              35679999999999864 5544443   677889999999987443311      122346789999999998 7888


Q ss_pred             ecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933          335 LWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       335 l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                      ++...+   ..++.|+.+++++ ++++.++.. +..+++|++|++++ ++++.+|..  +..+++|++|++.+.|
T Consensus       139 l~~~~~---~~l~~l~~l~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~-N~L~~lp~~--~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         139 LPPGLL---TPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKG--FFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCTTTT---TTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTT--TTTTCCCSEEECCSCC
T ss_pred             eccccc---cccccchhccccc-ccccccCccccccccccceeeccc-CCCcccChh--HCCCCCCCEEEecCCC
Confidence            888777   7899999999999 578888764 67899999999988 679998763  4467999999998533

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=8.2e-11  Score=104.58  Aligned_cols=205  Identities=18%  Similarity=0.166  Sum_probs=122.6

Q ss_pred             cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (453)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~  253 (453)
                      .+++++|+++++ .++.+ +...+.++++|++|+++++.....++. .       ..... ++++++.+..+.++..+  
T Consensus        28 ~~~l~~L~Ls~n-~i~~l-~~~~f~~l~~L~~L~ls~n~~~~~i~~-~-------~f~~l-~~l~~l~~~~~n~l~~~--   94 (242)
T d1xwdc1          28 PRNAIELRFVLT-KLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEA-D-------VFSNL-PKLHEIRIEKANNLLYI--   94 (242)
T ss_dssp             CSCCSEEEEESC-CCCEE-CTTTTTTCTTCCEEEEESCTTCCEECS-S-------SEESC-TTCCEEEEECCTTCCEE--
T ss_pred             CCCCCEEECcCC-cCCcc-ChhHhhccchhhhhhhccccccceeec-c-------ccccc-ccccccccccccccccc--
Confidence            467888888875 35544 444577788888888887654443211 0       00112 67788877777777665  


Q ss_pred             CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccc--cccccccccccccccccC-CCcCEEeecCCC
Q 012933          254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEE--NFLLAHQVQPLFDEKVSF-PRLRWLELSGLH  330 (453)
Q Consensus       254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~l~~~~~~~~~l-~~L~~L~l~~~~  330 (453)
                      .+..+..+++|+.+++.++. +...+..    ..+.+++.+......  .+.   .+.  ......+ ..++.|+++++ 
T Consensus        95 ~~~~~~~l~~L~~l~l~~~~-l~~~~~~----~~~~~l~~l~~~~~~n~~l~---~i~--~~~~~~~~~~l~~L~l~~n-  163 (242)
T d1xwdc1          95 NPEAFQNLPNLQYLLISNTG-IKHLPDV----HKIHSLQKVLLDIQDNINIH---TIE--RNSFVGLSFESVILWLNKN-  163 (242)
T ss_dssp             CTTSEECCTTCCEEEEESCC-CCSCCCC----TTTCBSSCEEEEEESCTTCC---EEC--TTSSTTSBSSCEEEECCSS-
T ss_pred             ccccccccccccccccchhh-hcccccc----cccccccccccccccccccc---ccc--ccccccccccceeeecccc-
Confidence            34567888888888888864 3333322    122233333322111  111   000  0011122 46777888776 


Q ss_pred             CcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933          331 KVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (453)
Q Consensus       331 ~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~  408 (453)
                      .++.++...+    ..++++++....++.++++|.+ +.++++|++|++++ ++++.++.. .+.++++|+.+++.++.
T Consensus       164 ~l~~i~~~~~----~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~-~~~~l~~L~~l~~~~l~  236 (242)
T d1xwdc1         164 GIQEIHNCAF----NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSY-GLENLKKLRARSTYNLK  236 (242)
T ss_dssp             CCCEECTTTT----TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT-SCCCCCCSS-SCTTCCEEESSSEESSS
T ss_pred             cccccccccc----cchhhhccccccccccccccHHHhcCCCCCCEEECCC-CcCCccCHH-HHcCCcccccCcCCCCC
Confidence            6777776664    5667777776666788888875 57789999999977 568887663 44455566555554433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=4.9e-11  Score=103.73  Aligned_cols=166  Identities=20%  Similarity=0.280  Sum_probs=94.5

Q ss_pred             ccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceec
Q 012933          173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC  252 (453)
Q Consensus       173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~  252 (453)
                      .+.+|++|++++|. +++..   .+..+++|++|+++++ +++++....           .+++|++|++.++ .++++ 
T Consensus        44 ~L~~L~~L~l~~~~-i~~l~---~l~~l~~L~~L~L~~n-~i~~l~~~~-----------~l~~L~~L~l~~n-~i~~l-  105 (210)
T d1h6ta2          44 ELNSIDQIIANNSD-IKSVQ---GIQYLPNVTKLFLNGN-KLTDIKPLA-----------NLKNLGWLFLDEN-KVKDL-  105 (210)
T ss_dssp             HHHTCCEEECTTSC-CCCCT---TGGGCTTCCEEECCSS-CCCCCGGGT-----------TCTTCCEEECCSS-CCCCG-
T ss_pred             HhcCccEEECcCCC-CCCch---hHhhCCCCCEEeCCCc-cccCccccc-----------cCccccccccccc-ccccc-
Confidence            35677788777763 33332   2566777777777775 344432211           1266677776654 34443 


Q ss_pred             cCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCc
Q 012933          253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV  332 (453)
Q Consensus       253 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l  332 (453)
                         ..+..+++|+.|++.++... .+                                  +....+++++.++++++ .+
T Consensus       106 ---~~l~~l~~L~~L~l~~~~~~-~~----------------------------------~~l~~l~~l~~l~~~~n-~l  146 (210)
T d1h6ta2         106 ---SSLKDLKKLKSLSLEHNGIS-DI----------------------------------NGLVHLPQLESLYLGNN-KI  146 (210)
T ss_dssp             ---GGGTTCTTCCEEECTTSCCC-CC----------------------------------GGGGGCTTCCEEECCSS-CC
T ss_pred             ---cccccccccccccccccccc-cc----------------------------------ccccccccccccccccc-cc
Confidence               23555666666666654321 11                                  12234566677776665 34


Q ss_pred             ceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcc
Q 012933          333 QHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIAD  406 (453)
Q Consensus       333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~  406 (453)
                      ++....     ..+++|+.++++++ .+++++. +.++++|++|+++++ .+++++.   ..++++|++|++++
T Consensus       147 ~~~~~~-----~~l~~L~~l~l~~n-~l~~i~~-l~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         147 TDITVL-----SRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFS  209 (210)
T ss_dssp             CCCGGG-----GGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEE
T ss_pred             cccccc-----cccccccccccccc-ccccccc-ccCCCCCCEEECCCC-CCCCChh---hcCCCCCCEEEccC
Confidence            443321     46677777777774 4555543 556777777777663 5766642   44667777777753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.19  E-value=4.7e-10  Score=104.99  Aligned_cols=300  Identities=15%  Similarity=0.081  Sum_probs=154.7

Q ss_pred             hhhhcccchhhcccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCc
Q 012933            8 FFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSL   87 (453)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L   87 (453)
                      .+++..++ +..++.  .+++|++|+++++ +++++|..           +.+|+.|++.++ .++.+..     -.+.|
T Consensus        42 ~LdLs~~~-L~~lp~--~~~~L~~L~Ls~N-~l~~lp~~-----------~~~L~~L~l~~n-~l~~l~~-----lp~~L  100 (353)
T d1jl5a_          42 ELELNNLG-LSSLPE--LPPHLESLVASCN-SLTELPEL-----------PQSLKSLLVDNN-NLKALSD-----LPPLL  100 (353)
T ss_dssp             EEECTTSC-CSCCCS--CCTTCSEEECCSS-CCSSCCCC-----------CTTCCEEECCSS-CCSCCCS-----CCTTC
T ss_pred             EEEeCCCC-CCCCCC--CCCCCCEEECCCC-CCcccccc-----------hhhhhhhhhhhc-ccchhhh-----hcccc
Confidence            34444332 334443  3689999999975 89888864           568999999883 3444321     12569


Q ss_pred             ceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCC
Q 012933           88 ERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQ  167 (453)
Q Consensus        88 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  167 (453)
                      ++|+++++ .+..+|. ...+++|++++++++...               ..+   .....+..+.+..........   
T Consensus       101 ~~L~L~~n-~l~~lp~-~~~l~~L~~L~l~~~~~~---------------~~~---~~~~~l~~l~~~~~~~~~~~~---  157 (353)
T d1jl5a_         101 EYLGVSNN-QLEKLPE-LQNSSFLKIIDVDNNSLK---------------KLP---DLPPSLEFIAAGNNQLEELPE---  157 (353)
T ss_dssp             CEEECCSS-CCSSCCC-CTTCTTCCEEECCSSCCS---------------CCC---CCCTTCCEEECCSSCCSSCCC---
T ss_pred             cccccccc-ccccccc-hhhhccceeecccccccc---------------ccc---cccccccchhhcccccccccc---
Confidence            99999987 4777874 577999999999865321               000   112445555554443222111   


Q ss_pred             CCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCC
Q 012933          168 ALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPK  247 (453)
Q Consensus       168 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  247 (453)
                         ...++.++.+.+.++... .. +.    .....+.+...+ ..+..++.          .. .++.|+.+.+.++..
T Consensus       158 ---l~~l~~l~~L~l~~n~~~-~~-~~----~~~~~~~l~~~~-~~~~~~~~----------~~-~l~~L~~l~l~~n~~  216 (353)
T d1jl5a_         158 ---LQNLPFLTAIYADNNSLK-KL-PD----LPLSLESIVAGN-NILEELPE----------LQ-NLPFLTTIYADNNLL  216 (353)
T ss_dssp             ---CTTCTTCCEEECCSSCCS-SC-CC----CCTTCCEEECCS-SCCSSCCC----------CT-TCTTCCEEECCSSCC
T ss_pred             ---ccccccceeccccccccc-cc-cc----cccccccccccc-cccccccc----------cc-ccccccccccccccc
Confidence               133566666666654321 11 10    111122222222 11111110          01 114555555544321


Q ss_pred             cceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccc-----cccccc---cccc-ccccc-ccc
Q 012933          248 LKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSE-----ENFLLA---HQVQ-PLFDE-KVS  317 (453)
Q Consensus       248 l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~-----~~~~~~---~~l~-~~~~~-~~~  317 (453)
                      - .++      ...+++..+.+....... .+..      ..++...++...     ..+...   .... ..+.. ...
T Consensus       217 ~-~~~------~~~~~l~~~~~~~~~~~~-~~~~------~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  282 (353)
T d1jl5a_         217 K-TLP------DLPPSLEALNVRDNYLTD-LPEL------PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL  282 (353)
T ss_dssp             S-SCC------SCCTTCCEEECCSSCCSC-CCCC------CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCC
T ss_pred             c-ccc------cccccccccccccccccc-cccc------cccccccccccccccccccccchhcccccccCcccccccc
Confidence            1 110      112233333333321110 0000      001111111000     000000   0000 00011 124


Q ss_pred             CCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccC
Q 012933          318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLV  397 (453)
Q Consensus       318 l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~  397 (453)
                      +++|++|++++| .++.++       ..+++|+.|++++| .++++|..   +++|++|++++|+ ++.+|.  .+   .
T Consensus       283 ~~~L~~L~Ls~N-~l~~lp-------~~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~-L~~lp~--~~---~  344 (353)
T d1jl5a_         283 PPSLEELNVSNN-KLIELP-------ALPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP-LREFPD--IP---E  344 (353)
T ss_dssp             CTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSSCCC--CC---T
T ss_pred             CCCCCEEECCCC-ccCccc-------cccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc-CCCCCc--cc---c
Confidence            689999999998 677776       45789999999884 68888863   5789999998864 998875  34   4


Q ss_pred             CcceEEE
Q 012933          398 NLGRMMI  404 (453)
Q Consensus       398 ~L~~L~i  404 (453)
                      +|+.|.+
T Consensus       345 ~L~~L~~  351 (353)
T d1jl5a_         345 SVEDLRM  351 (353)
T ss_dssp             TCCEEEC
T ss_pred             ccCeeEC
Confidence            5777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=1.2e-10  Score=100.27  Aligned_cols=75  Identities=24%  Similarity=0.336  Sum_probs=50.3

Q ss_pred             ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccc
Q 012933          316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSES  395 (453)
Q Consensus       316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~  395 (453)
                      ..+++|+.|+++++ .+..++  .+   ..+++|++|++.+| .+++++. +.++++|++|+++++ ++++++.   ...
T Consensus       125 ~~l~~L~~L~l~~n-~l~~~~--~l---~~~~~L~~L~l~~n-~l~~l~~-l~~l~~L~~L~ls~N-~i~~i~~---l~~  192 (199)
T d2omxa2         125 KNLTNLNRLELSSN-TISDIS--AL---SGLTSLQQLNFSSN-QVTDLKP-LANLTTLERLDISSN-KVSDISV---LAK  192 (199)
T ss_dssp             TTCTTCSEEECCSS-CCCCCG--GG---TTCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG---GGG
T ss_pred             chhhhhHHhhhhhh-hhcccc--cc---cccccccccccccc-cccCCcc-ccCCCCCCEEECCCC-CCCCCcc---ccC
Confidence            35677888888777 455443  12   57788888888874 5666653 567788888888775 5777643   456


Q ss_pred             cCCcceE
Q 012933          396 LVNLGRM  402 (453)
Q Consensus       396 l~~L~~L  402 (453)
                      +++|++|
T Consensus       193 L~~L~~L  199 (199)
T d2omxa2         193 LTNLESL  199 (199)
T ss_dssp             CTTCSEE
T ss_pred             CCCCCcC
Confidence            6777764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.6e-10  Score=103.90  Aligned_cols=211  Identities=18%  Similarity=0.186  Sum_probs=115.1

Q ss_pred             CccccccCccCCCCcceEEeccccccccccccCCccchhHHHHH-HhhcCCCCccEEEEeeCCCCcccccCCCCCcCccC
Q 012933           97 NMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFN  175 (453)
Q Consensus        97 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~  175 (453)
                      +++.+|..+  .+++++|+++++               .+..++ ....++++|++|+++++. +..+.... +  ..++
T Consensus        22 ~L~~iP~~i--p~~~~~L~Ls~N---------------~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~-~--~~~~   80 (284)
T d1ozna_          22 GLQAVPVGI--PAASQRIFLHGN---------------RISHVPAASFRACRNLTILWLHSNV-LARIDAAA-F--TGLA   80 (284)
T ss_dssp             CCSSCCTTC--CTTCSEEECTTS---------------CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT-T--TTCT
T ss_pred             CCCccCCCC--CCCCCEEECcCC---------------cCCCCCHHHhhcccccccccccccc-cccccccc-c--cccc
Confidence            477777543  256777877743               222222 234556667777776654 44333322 1  2355


Q ss_pred             CCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCC
Q 012933          176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT  255 (453)
Q Consensus       176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~  255 (453)
                      .++++.+.....++.. +...+..+++|+.|+++++.. ..+..         ......++|+.+.+.+. .++.+  .+
T Consensus        81 ~~~~l~~~~~~~~~~l-~~~~~~~l~~L~~L~l~~n~~-~~~~~---------~~~~~~~~L~~l~l~~N-~l~~i--~~  146 (284)
T d1ozna_          81 LLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGL-QELGP---------GLFRGLAALQYLYLQDN-ALQAL--PD  146 (284)
T ss_dssp             TCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCC-CCCCT---------TTTTTCTTCCEEECCSS-CCCCC--CT
T ss_pred             cccccccccccccccc-cchhhcccccCCEEecCCccc-ccccc---------cccchhcccchhhhccc-ccccc--Ch
Confidence            6666666655555544 233356666666666666432 11111         00111245566665543 23333  12


Q ss_pred             CcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCccee
Q 012933          256 GNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHL  335 (453)
Q Consensus       256 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l  335 (453)
                      ..+..+++|++|+++++ ++..++...                                ...+++|++++++++ .+..+
T Consensus       147 ~~f~~~~~L~~L~l~~N-~l~~l~~~~--------------------------------f~~l~~L~~l~l~~N-~l~~i  192 (284)
T d1ozna_         147 DTFRDLGNLTHLFLHGN-RISSVPERA--------------------------------FRGLHSLDRLLLHQN-RVAHV  192 (284)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCEECTTT--------------------------------TTTCTTCCEEECCSS-CCCEE
T ss_pred             hHhccccchhhcccccC-cccccchhh--------------------------------hccccccchhhhhhc-ccccc
Confidence            33445556666666554 233333221                                234567777777777 56667


Q ss_pred             cccCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEeccc
Q 012933          336 WKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSK  380 (453)
Q Consensus       336 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~  380 (453)
                      ....|   ..+++|++|++++ +.++.++. .+..+++|++|++++
T Consensus       193 ~~~~f---~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         193 HPHAF---RDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             CTTTT---TTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             ChhHh---hhhhhcccccccc-cccccccccccccccccCEEEecC
Confidence            66666   7778888888887 45666554 456778888888866

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=8.7e-10  Score=97.73  Aligned_cols=66  Identities=23%  Similarity=0.167  Sum_probs=44.8

Q ss_pred             cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccC
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLT  389 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~  389 (453)
                      ..++++.+...++..++.++...|   .++++|++|++++ ++++.+|.+ +.++++|+.+++   .+++.+|.
T Consensus       174 ~~~~l~~~~~l~~n~l~~l~~~~f---~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~l~~---~~l~~lp~  240 (242)
T d1xwdc1         174 NGTQLDELNLSDNNNLEELPNDVF---HGASGPVILDISR-TRIHSLPSYGLENLKKLRARST---YNLKKLPT  240 (242)
T ss_dssp             TTCCEEEEECTTCTTCCCCCTTTT---TTSCCCSEEECTT-SCCCCCCSSSCTTCCEEESSSE---ESSSCSCC
T ss_pred             cchhhhccccccccccccccHHHh---cCCCCCCEEECCC-CcCCccCHHHHcCCcccccCcC---CCCCcCCC
Confidence            345666666555557888888877   7899999999998 568888764 444444444444   55655543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.11  E-value=2.9e-10  Score=98.69  Aligned_cols=165  Identities=19%  Similarity=0.322  Sum_probs=112.0

Q ss_pred             CCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccccccc
Q 012933          146 FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNA  225 (453)
Q Consensus       146 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  225 (453)
                      +.++++|+++++. +..+.. .    ..+++|++|+++++ .+++..+   +..+++|+.|+++++ .+++++...    
T Consensus        45 L~~L~~L~l~~~~-i~~l~~-l----~~l~~L~~L~L~~n-~i~~l~~---~~~l~~L~~L~l~~n-~i~~l~~l~----  109 (210)
T d1h6ta2          45 LNSIDQIIANNSD-IKSVQG-I----QYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDEN-KVKDLSSLK----  109 (210)
T ss_dssp             HHTCCEEECTTSC-CCCCTT-G----GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCGGGGT----
T ss_pred             hcCccEEECcCCC-CCCchh-H----hhCCCCCEEeCCCc-cccCccc---cccCccccccccccc-ccccccccc----
Confidence            4678999998876 544332 2    56899999999997 4665433   578999999999986 566553311    


Q ss_pred             ccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccc
Q 012933          226 DKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLA  305 (453)
Q Consensus       226 ~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  305 (453)
                             .+++|+.|.+.++.. ..+    ..+..+++++.++++++. +.+.+.    .                    
T Consensus       110 -------~l~~L~~L~l~~~~~-~~~----~~l~~l~~l~~l~~~~n~-l~~~~~----~--------------------  152 (210)
T d1h6ta2         110 -------DLKKLKSLSLEHNGI-SDI----NGLVHLPQLESLYLGNNK-ITDITV----L--------------------  152 (210)
T ss_dssp             -------TCTTCCEEECTTSCC-CCC----GGGGGCTTCCEEECCSSC-CCCCGG----G--------------------
T ss_pred             -------ccccccccccccccc-ccc----cccccccccccccccccc-cccccc----c--------------------
Confidence                   238999999988763 332    457778899999987753 322211    1                    


Q ss_pred             ccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933          306 HQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK  380 (453)
Q Consensus       306 ~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  380 (453)
                                ..+++|++++++++ .+++++.  +   ..+++|++|++++| .+++++ .+.++++|++|++++
T Consensus       153 ----------~~l~~L~~l~l~~n-~l~~i~~--l---~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         153 ----------SRLTKLDTLSLEDN-QISDIVP--L---AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ----------GGCTTCSEEECCSS-CCCCCGG--G---TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEE
T ss_pred             ----------cccccccccccccc-ccccccc--c---cCCCCCCEEECCCC-CCCCCh-hhcCCCCCCEEEccC
Confidence                      24567777777776 4555432  2   57778888888774 577765 366778888887753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.10  E-value=9.9e-11  Score=100.84  Aligned_cols=33  Identities=18%  Similarity=0.275  Sum_probs=15.7

Q ss_pred             CccceeeeccCCCcceeccCCCcccCCCCccEEeeecC
Q 012933          235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNC  272 (453)
Q Consensus       235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c  272 (453)
                      ++|++|.+.++ .++++    ..+.++++|+.|+++++
T Consensus       150 ~~L~~L~l~~n-~l~~l----~~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         150 TSLQQLNFSSN-QVTDL----KPLANLTTLERLDISSN  182 (199)
T ss_dssp             TTCSEEECCSS-CCCCC----GGGTTCTTCCEEECCSS
T ss_pred             ccccccccccc-cccCC----ccccCCCCCCEEECCCC
Confidence            44555555443 23332    23445555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.8e-09  Score=88.10  Aligned_cols=59  Identities=22%  Similarity=0.290  Sum_probs=29.7

Q ss_pred             cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC--CCCCCCCCCEEeccc
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP--PSWHLENLEALEVSK  380 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~  380 (453)
                      .+++|++|++++| .++.++...+   ..+++|+.|++++ +.+++++.  .+..+++|++|++++
T Consensus        61 ~l~~L~~L~ls~N-~i~~l~~~~~---~~l~~L~~L~L~~-N~i~~~~~l~~l~~l~~L~~L~l~~  121 (162)
T d1a9na_          61 LLRRLKTLLVNNN-RICRIGEGLD---QALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILR  121 (162)
T ss_dssp             CCSSCCEEECCSS-CCCEECSCHH---HHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred             cCcchhhhhcccc-cccCCCcccc---ccccccccceecc-ccccccccccccccccccchhhcCC
Confidence            4455555555555 4555544433   4455555555555 23444432  234455555555555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.61  E-value=1.1e-07  Score=80.75  Aligned_cols=106  Identities=11%  Similarity=0.087  Sum_probs=63.8

Q ss_pred             CCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCc
Q 012933          262 PELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDE  341 (453)
Q Consensus       262 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~  341 (453)
                      ++++.|++++..--...+...  +..+++|+.|+++++....+.      ......+++|++|+++++ +++.++.+.| 
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~--f~~l~~L~~L~L~~N~i~~~~------~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F-   98 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGL--FGRLPHLVKLELKRNQLTGIE------PNAFEGASHIQELQLGEN-KIKEISNKMF-   98 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCS--GGGCTTCCEEECCSSCCCCBC------TTTTTTCTTCCEEECCSC-CCCEECSSSS-
T ss_pred             CCCCEEEeCCCCCcccccccc--cCCCceEeeeecccccccccc------ccccccccccceeeeccc-cccccCHHHH-
Confidence            578888887754322333333  566667777777665322211      122335567777777776 5667766666 


Q ss_pred             ccccCCCccceeeccCCCccccCCC-CCCCCCCCEEeccc
Q 012933          342 SNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSK  380 (453)
Q Consensus       342 ~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~  380 (453)
                        .++++|++|++++ +.++.++.+ +..+++|++|++++
T Consensus        99 --~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          99 --LGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             --TTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTT
T ss_pred             --hCCCcccccccCC-ccccccCHHHhcCCcccccccccc
Confidence              6677777777777 556666553 45667777777755

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=7.8e-09  Score=85.36  Aligned_cols=135  Identities=12%  Similarity=0.090  Sum_probs=80.5

Q ss_pred             cccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCc
Q 012933           19 AYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNM   98 (453)
Q Consensus        19 ~~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l   98 (453)
                      ..+.+..+..+++|+|+++ +++.|+..+..        +++|+.|++++ +.++.+.   ....+++|++|++++|. +
T Consensus        10 ~~~~~~n~~~lr~L~L~~n-~I~~i~~~~~~--------l~~L~~L~Ls~-N~i~~l~---~~~~l~~L~~L~ls~N~-i   75 (162)
T d1a9na_          10 QAAQYTNAVRDRELDLRGY-KIPVIENLGAT--------LDQFDAIDFSD-NEIRKLD---GFPLLRRLKTLLVNNNR-I   75 (162)
T ss_dssp             TSCEEECTTSCEEEECTTS-CCCSCCCGGGG--------TTCCSEEECCS-SCCCEEC---CCCCCSSCCEEECCSSC-C
T ss_pred             hhHhccCcCcCcEEECCCC-CCCccCccccc--------cccCCEEECCC-CCCCccC---CcccCcchhhhhccccc-c
Confidence            3455666778888888886 67777643233        77888888888 3465552   14567888888888864 6


Q ss_pred             cccccCcc-CCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCC
Q 012933           99 KTFSHGIL-STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNL  177 (453)
Q Consensus        99 ~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L  177 (453)
                      +.++.++. .+++|+.|+++                                      ++. +..+.....+  ..+++|
T Consensus        76 ~~l~~~~~~~l~~L~~L~L~--------------------------------------~N~-i~~~~~l~~l--~~l~~L  114 (162)
T d1a9na_          76 CRIGEGLDQALPDLTELILT--------------------------------------NNS-LVELGDLDPL--ASLKSL  114 (162)
T ss_dssp             CEECSCHHHHCTTCCEEECC--------------------------------------SCC-CCCGGGGGGG--GGCTTC
T ss_pred             cCCCccccccccccccceec--------------------------------------ccc-cccccccccc--cccccc
Confidence            66554432 35555555555                                      433 2222111101  346778


Q ss_pred             cEEEecCCCCccccCc--hhHHhhcCCCcEEEec
Q 012933          178 ARLVVDDCTNMSSAIP--ANLLRCLNNLQWLEVR  209 (453)
Q Consensus       178 ~~L~l~~c~~l~~~~~--~~~l~~l~~L~~L~l~  209 (453)
                      ++|++++++ ++....  ..++..+++|+.|+-.
T Consensus       115 ~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_         115 TYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             chhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence            888888764 332211  2346778888888643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.55  E-value=8.7e-08  Score=74.99  Aligned_cols=86  Identities=19%  Similarity=0.125  Sum_probs=55.4

Q ss_pred             cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCccc
Q 012933          315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSE  394 (453)
Q Consensus       315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~  394 (453)
                      ++.+++|++|+++++ .+++++.. +   ..+++|+.|++++ +.++.++. +..+++|++|++++ +++++++......
T Consensus        16 l~~l~~L~~L~ls~N-~l~~lp~~-~---~~l~~L~~L~l~~-N~i~~l~~-~~~l~~L~~L~l~~-N~i~~~~~~~~l~   87 (124)
T d1dcea3          16 LEQLLLVTHLDLSHN-RLRALPPA-L---AALRCLEVLQASD-NALENVDG-VANLPRLQELLLCN-NRLQQSAAIQPLV   87 (124)
T ss_dssp             GGGGTTCCEEECCSS-CCCCCCGG-G---GGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECCS-SCCCSSSTTGGGG
T ss_pred             cccCCCCCEEECCCC-ccCcchhh-h---hhhhccccccccc-ccccccCc-cccccccCeEECCC-CccCCCCCchhhc
Confidence            345567777777776 56666543 3   5677777777777 56666653 56677777777766 5666665433445


Q ss_pred             ccCCcceEEEcccc
Q 012933          395 SLVNLGRMMIADCK  408 (453)
Q Consensus       395 ~l~~L~~L~i~~C~  408 (453)
                      .+++|+++++++-+
T Consensus        88 ~~~~L~~L~l~~N~  101 (124)
T d1dcea3          88 SCPRLVLLNLQGNS  101 (124)
T ss_dssp             GCTTCCEEECTTSG
T ss_pred             CCCCCCEEECCCCc
Confidence            66777777776654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.53  E-value=2.4e-07  Score=78.52  Aligned_cols=82  Identities=18%  Similarity=0.263  Sum_probs=35.2

Q ss_pred             cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccc
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSES  395 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~  395 (453)
                      .+++|+.|+++++ .+..++.+.+   ..+++|++|++++ ++++.++.. +.++++|++|++++ ++++.++.. .+..
T Consensus        52 ~l~~L~~L~L~~N-~i~~~~~~~~---~~~~~L~~L~Ls~-N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~-~f~~  124 (192)
T d1w8aa_          52 RLPHLVKLELKRN-QLTGIEPNAF---EGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPG-SFEH  124 (192)
T ss_dssp             GCTTCCEEECCSS-CCCCBCTTTT---TTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCS-SCCCEECTT-SSTT
T ss_pred             CCceEeeeecccc-cccccccccc---ccccccceeeecc-ccccccCHHHHhCCCcccccccCC-ccccccCHH-HhcC
Confidence            3444444444444 3333433333   3444444444444 344444332 33444444444443 344444332 2233


Q ss_pred             cCCcceEEEc
Q 012933          396 LVNLGRMMIA  405 (453)
Q Consensus       396 l~~L~~L~i~  405 (453)
                      +++|+++++.
T Consensus       125 l~~L~~l~L~  134 (192)
T d1w8aa_         125 LNSLTSLNLA  134 (192)
T ss_dssp             CTTCCEEECT
T ss_pred             Cccccccccc
Confidence            4444444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=8.1e-08  Score=75.17  Aligned_cols=101  Identities=21%  Similarity=0.253  Sum_probs=79.5

Q ss_pred             CEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcce
Q 012933          322 RWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGR  401 (453)
Q Consensus       322 ~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~  401 (453)
                      +.|+++++ +++.++.  +   ..+++|++|++++ +.++++|..+..+++|++|++++ +.+++++.   ...+++|++
T Consensus         1 R~L~Ls~n-~l~~l~~--l---~~l~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~---~~~l~~L~~   69 (124)
T d1dcea3           1 RVLHLAHK-DLTVLCH--L---EQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASD-NALENVDG---VANLPRLQE   69 (124)
T ss_dssp             SEEECTTS-CCSSCCC--G---GGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCS-SCCCCCGG---GTTCSSCCE
T ss_pred             CEEEcCCC-CCCCCcc--c---ccCCCCCEEECCC-CccCcchhhhhhhhccccccccc-ccccccCc---cccccccCe
Confidence            56888888 6776652  3   7899999999998 78999998888999999999988 78988853   567899999


Q ss_pred             EEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933          402 MMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE  440 (453)
Q Consensus       402 L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~  440 (453)
                      ++++++.-- +      .........++.|++++++++|
T Consensus        70 L~l~~N~i~-~------~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          70 LLLCNNRLQ-Q------SAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             EECCSSCCC-S------SSTTGGGGGCTTCCEEECTTSG
T ss_pred             EECCCCccC-C------CCCchhhcCCCCCCEEECCCCc
Confidence            999887521 1      1122345678899999988876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.4e-08  Score=96.34  Aligned_cols=365  Identities=13%  Similarity=0.082  Sum_probs=168.5

Q ss_pred             CcccccceEEeccccchhhhh-cccccccccccccccccceeeccccccccccccc----cccccCCCcceEeecCCCCc
Q 012933           24 GIPSSLVNLNVSRCDKIEEII-RHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLE----NYTLEFPSLERVSMTHCPNM   98 (453)
Q Consensus        24 ~~~~~L~~L~L~~c~~l~~i~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~l~~L~~L~l~~c~~l   98 (453)
                      ..+++++.|+|++|. ++... ..+.    .....+++|++|+++++ .++.....    ......++|++|++++|. +
T Consensus        24 ~~l~~l~~L~L~~~~-i~~~~~~~l~----~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i   96 (460)
T d1z7xw1          24 PLLQQCQVVRLDDCG-LTEARCKDIS----SALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-L   96 (460)
T ss_dssp             HHHTTCSEEEEESSC-CCHHHHHHHH----HHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSC-C
T ss_pred             HhCCCCCEEEeCCCC-CCHHHHHHHH----HHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhcCCCCCCEEECCCCC-c
Confidence            457899999999983 54211 1111    12234889999999984 34322111    111123579999999985 5


Q ss_pred             cc-----cccCccCCCCcceEEecccccccc------------------ccccCCcc-chhHHHHHHhhcCCCCccEEEE
Q 012933           99 KT-----FSHGILSTPKLHKVQVTEKEEGEL------------------HHWEGNKL-NSTIQKCYEEMIGFRDMEYLQL  154 (453)
Q Consensus        99 ~~-----~~~~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l  154 (453)
                      +.     ++..+...++|++|+++++.--..                  ........ ......+...+.....++.+.+
T Consensus        97 t~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  176 (460)
T d1z7xw1          97 TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV  176 (460)
T ss_dssp             BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred             cccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccc
Confidence            53     445566789999999987531000                  00000000 0011122223333455566665


Q ss_pred             eeCCCCccc--ccCCCCCcCccCCCcEEEecCCCCccccC--chhHHhhcCCCcEEEeccCccchhhhcccccccccCCC
Q 012933          155 SYFPHLKEI--WHGQALPVSFFNNLARLVVDDCTNMSSAI--PANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHR  230 (453)
Q Consensus       155 ~~~~~l~~~--~~~~~l~~~~l~~L~~L~l~~c~~l~~~~--~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  230 (453)
                      +++......  .....+. ........+.+.++.......  ....+...+.++.+.+.++........ ..   .....
T Consensus       177 s~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~-~~---~~~~~  251 (460)
T d1z7xw1         177 SNNDINEAGVRVLCQGLK-DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA-EL---CPGLL  251 (460)
T ss_dssp             CSSBCHHHHHHHHHHHHH-HSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH-HH---HHHHT
T ss_pred             cccccccccccccccccc-cccccccccccccccccchhhhcccccccccccccccchhhccccccccc-hh---hcccc
Confidence            554311100  0000000 012245556666553221110  112345567777777776533221100 00   00011


Q ss_pred             CCCCCccceeeeccCCCcceec-cCCCcccCCCCccEEeeecCCCCceeccCC---cccccCCCcccccccccccccccc
Q 012933          231 GPLFPKLYGLRLIDLPKLKRFC-NFTGNIIELPELQHLTIQNCPDMETFISNS---VVHVTTDNKEPQKLTSEENFLLAH  306 (453)
Q Consensus       231 ~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~  306 (453)
                      . ..+.++.+++.++.--.... .....+...+.++.++++++. +.+.....   ........|+.+.++++.--.   
T Consensus       252 ~-~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~-i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~---  326 (460)
T d1z7xw1         252 H-PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTA---  326 (460)
T ss_dssp             S-TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG---
T ss_pred             c-cccccccccccccccccccccccccccccccccccccccccc-ccccccchhhccccccccccccccccccchhh---
Confidence            1 22567778777664221110 011234456777777776643 22111000   001122356677766652111   


Q ss_pred             ccccccc-ccccCCCcCEEeecCCCCcceecccCCc-c-cccCCCccceeeccCCCccc-----cCCCCCCCCCCCEEec
Q 012933          307 QVQPLFD-EKVSFPRLRWLELSGLHKVQHLWKENDE-S-NKAFANLESLEISECSKLQK-----LVPPSWHLENLEALEV  378 (453)
Q Consensus       307 ~l~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~-~-~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l  378 (453)
                      .-...+. .....++|++|+++++ .+++.....+. . ....+.|++|++++| .+++     ++..+...++|++|++
T Consensus       327 ~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L  404 (460)
T d1z7xw1         327 ACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDL  404 (460)
T ss_dssp             GGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred             hhhhhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEEC
Confidence            0000000 0123457888888776 34432111100 0 024566788888876 3543     3333445677888888


Q ss_pred             ccCcccccccCCCc----ccccCCcceEEEcccc
Q 012933          379 SKCHGLINLLTFST----SESLVNLGRMMIADCK  408 (453)
Q Consensus       379 ~~c~~l~~l~~~~~----~~~l~~L~~L~i~~C~  408 (453)
                      ++ +.+++-....+    ......|++|++.++.
T Consensus       405 s~-N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         405 SN-NCLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             CS-SSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             CC-CcCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence            66 45544211111    1122467777777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.5e-06  Score=69.28  Aligned_cols=82  Identities=22%  Similarity=0.254  Sum_probs=45.7

Q ss_pred             cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccc
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSES  395 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~  395 (453)
                      .+++|++|++.++..++.++...|   .++++|+.|++++ ++++.++.. +..+++|++|++++ ++++.++.. .+..
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~f---~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~-~~~~  102 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRDL---RGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWK-TVQG  102 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGS---CSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS-SCCSCCCST-TTCS
T ss_pred             CccccCeeecCCCccccccCchhh---ccccccCcceeec-cccCCcccccccccccccceeccC-CCCcccChh-hhcc
Confidence            345566666655545666665555   5566666666666 455655443 45566666666655 556655543 2222


Q ss_pred             cCCcceEEEc
Q 012933          396 LVNLGRMMIA  405 (453)
Q Consensus       396 l~~L~~L~i~  405 (453)
                       .+|++|+++
T Consensus       103 -~~l~~L~L~  111 (156)
T d2ifga3         103 -LSLQELVLS  111 (156)
T ss_dssp             -CCCCEEECC
T ss_pred             -ccccccccC
Confidence             346666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.24  E-value=3.2e-09  Score=90.87  Aligned_cols=123  Identities=18%  Similarity=0.181  Sum_probs=60.9

Q ss_pred             Cccceeeecc-CCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccccccccc
Q 012933          235 PKLYGLRLID-LPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFD  313 (453)
Q Consensus       235 ~~L~~L~L~~-~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~  313 (453)
                      ..++.+.+.+ .+.++.+   +..+..+++|++|+++++. ++.++  +  +..+++|+.|+++++. +.       .++
T Consensus        23 ~~~~~~~l~~~~~~i~~l---~~sl~~L~~L~~L~Ls~n~-I~~i~--~--l~~l~~L~~L~Ls~N~-i~-------~i~   86 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKM---DATLSTLKACKHLALSTNN-IEKIS--S--LSGMENLRILSLGRNL-IK-------KIE   86 (198)
T ss_dssp             TTCSCEECCBCCTTCCCC---HHHHHHTTTCCEEECSEEE-ESCCC--C--HHHHTTCCEEECCEEE-EC-------SCS
T ss_pred             cccceeeeecccCchhhh---hhHHhcccccceeECcccC-CCCcc--c--ccCCccccChhhcccc-cc-------ccc
Confidence            3455555543 2334433   2456778888888887643 44332  1  4455566666666542 11       001


Q ss_pred             c-cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC--CCCCCCCCCEEeccc
Q 012933          314 E-KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP--PSWHLENLEALEVSK  380 (453)
Q Consensus       314 ~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~  380 (453)
                      . ...+++|+.|+++++ .+++++.  +   ..+++|+.|++++ +.+++++.  .+..+++|++|++++
T Consensus        87 ~~~~~~~~L~~L~l~~N-~i~~l~~--~---~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_          87 NLDAVADTLEELWISYN-QIASLSG--I---EKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             SHHHHHHHCCEEECSEE-ECCCHHH--H---HHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             ccccccccccccccccc-ccccccc--c---ccccccccccccc-chhccccccccccCCCccceeecCC
Confidence            1 112345666666555 3444321  1   4555566666655 33444432  234555555555555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.8e-06  Score=68.17  Aligned_cols=108  Identities=12%  Similarity=0.027  Sum_probs=80.4

Q ss_pred             CCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccC
Q 012933          260 ELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEN  339 (453)
Q Consensus       260 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  339 (453)
                      .+...+.++..+ ..+.+.+..   +..+++|++|++.+...++..     ..+.+..+++|+.|+++++ +++.++.+.
T Consensus         6 ~c~~~~~l~c~~-~~~~~~p~~---l~~l~~l~~L~l~~n~~l~~i-----~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~   75 (156)
T d2ifga3           6 CPHGSSGLRCTR-DGALDSLHH---LPGAENLTELYIENQQHLQHL-----ELRDLRGLGELRNLTIVKS-GLRFVAPDA   75 (156)
T ss_dssp             CCSSSSCEECCS-SCCCTTTTT---SCSCSCCSEEECCSCSSCCEE-----CGGGSCSCCCCSEEECCSS-CCCEECTTG
T ss_pred             CcCCCCeEEecC-CCCccCccc---ccCccccCeeecCCCcccccc-----CchhhccccccCcceeecc-ccCCccccc
Confidence            344455566655 333444443   566779999999876545411     1123557899999999999 799999888


Q ss_pred             CcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccC
Q 012933          340 DESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKC  381 (453)
Q Consensus       340 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  381 (453)
                      |   ..+++|++|++++ ++++.+|.......+|++|++++.
T Consensus        76 f---~~l~~L~~L~Ls~-N~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          76 F---HFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             G---GSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             c---cccccccceeccC-CCCcccChhhhccccccccccCCC
Confidence            8   8999999999999 789999987666668999999873

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.3e-08  Score=98.32  Aligned_cols=112  Identities=13%  Similarity=0.088  Sum_probs=73.0

Q ss_pred             cccceEEeccccchhhhh-cccccccccccccccccceeeccccccccccccc---cccccCCCcceEeecCCCCccc--
Q 012933           27 SSLVNLNVSRCDKIEEII-RHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLE---NYTLEFPSLERVSMTHCPNMKT--  100 (453)
Q Consensus        27 ~~L~~L~L~~c~~l~~i~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~l~~L~~L~l~~c~~l~~--  100 (453)
                      ++|+.|++++. ++.... ..       ..+.++++++|++.+|. ++.....   .....+++|++|+++++. +++  
T Consensus         2 ~~l~~ld~~~~-~i~~~~~~~-------l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~   71 (460)
T d1z7xw1           2 LDIQSLDIQCE-ELSDARWAE-------LLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVG   71 (460)
T ss_dssp             EEEEEEEEESC-CCCHHHHHH-------HHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHH
T ss_pred             CCCCEEEeeCC-cCChHHHHH-------HHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHH
Confidence            46899999764 665421 11       23348899999999974 4432211   224578999999999874 542  


Q ss_pred             ---cccCccC-CCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCC
Q 012933          101 ---FSHGILS-TPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFP  158 (453)
Q Consensus       101 ---~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  158 (453)
                         +...... ..+|++|++++|. +.         ......+...+..+++|++|+++++.
T Consensus        72 ~~~l~~~l~~~~~~L~~L~L~~n~-it---------~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          72 VHCVLQGLQTPSCKIQKLSLQNCC-LT---------GAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHHTTCSTTCCCCEEECTTSC-CB---------GGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHHHHhcCCCCCCEEECCCCC-cc---------ccccccccchhhcccccccccccccc
Confidence               2222222 4579999999763 11         12234556677888999999998875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.09  E-value=6.7e-08  Score=82.42  Aligned_cols=56  Identities=13%  Similarity=0.089  Sum_probs=29.9

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEecc
Q 012933           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTE  118 (453)
Q Consensus        58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~  118 (453)
                      +++|++|++++ .+++.+.   ....+++|++|++++| .++.++......++|+.|++++
T Consensus        47 L~~L~~L~Ls~-n~I~~i~---~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          47 LKACKHLALST-NNIEKIS---SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TTTCCEEECSE-EEESCCC---CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSE
T ss_pred             ccccceeECcc-cCCCCcc---cccCCccccChhhccc-cccccccccccccccccccccc
Confidence            66666776665 3344442   1445666677776665 3555443223334455555553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.78  E-value=8e-06  Score=75.47  Aligned_cols=257  Identities=14%  Similarity=0.062  Sum_probs=135.4

Q ss_pred             ccCcccccceEEeccccchhhh-hcccccccccccccccccceeecccccc--cccc-cc-----ccccccCCCcceEee
Q 012933           22 QVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPT--LTSF-CL-----ENYTLEFPSLERVSM   92 (453)
Q Consensus        22 ~~~~~~~L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~--l~~~-~~-----~~~~~~l~~L~~L~l   92 (453)
                      ++....+|+.|+|+++ .+..- ...+..    .....++|+.++++++..  .... +.     ......+++|+.|++
T Consensus        26 ~L~~~~~l~~L~Ls~n-~i~~~~~~~l~~----~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L  100 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGN-TIGTEAARWLSE----NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  100 (344)
T ss_dssp             HHHHCSCCCEEECTTS-EECHHHHHHHHH----TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHhhCCCCCEEECcCC-cCCHHHHHHHHH----HHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence            3455788999999986 44321 111111    233478899999987531  1110 00     122445789999999


Q ss_pred             cCCCCcc-----ccccCccCCCCcceEEeccccccccccccCC-ccchhHH--HHHHhhcCCCCccEEEEeeCCCCcccc
Q 012933           93 THCPNMK-----TFSHGILSTPKLHKVQVTEKEEGELHHWEGN-KLNSTIQ--KCYEEMIGFRDMEYLQLSYFPHLKEIW  164 (453)
Q Consensus        93 ~~c~~l~-----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~  164 (453)
                      ++|. ++     .+...+...++|++|+++.|.- .   ..+. .+.....  .........+.|+.+.++++. +....
T Consensus       101 ~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~l-~---~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i~~~~  174 (344)
T d2ca6a1         101 SDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGL-G---PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGS  174 (344)
T ss_dssp             CSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCC-H---HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGG
T ss_pred             cccc-cccccccchhhhhcccccchheecccccc-c---ccccccccccccccccccccccCcccceeeccccc-ccccc
Confidence            9874 33     2333444678899999987531 0   0000 0000000  011122456788888887765 32211


Q ss_pred             cCCCC--CcCccCCCcEEEecCCCCcccc----CchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccc
Q 012933          165 HGQAL--PVSFFNNLARLVVDDCTNMSSA----IPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLY  238 (453)
Q Consensus       165 ~~~~l--~~~~l~~L~~L~l~~c~~l~~~----~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~  238 (453)
                      ... +  .....+.|++|++++|. +...    .....+...++|+.|+++++. +.+...    ..+....... ++|+
T Consensus       175 ~~~-l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~----~~L~~~l~~~-~~L~  246 (344)
T d2ca6a1         175 MKE-WAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGS----SALAIALKSW-PNLR  246 (344)
T ss_dssp             HHH-HHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHH----HHHHHHGGGC-TTCC
T ss_pred             ccc-ccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhccccccccc-cccccc----cccccccccc-ccch
Confidence            100 1  01346789999998875 3211    011235677889999998764 332211    1111111123 7899


Q ss_pred             eeeeccCCCcceec--cCCCcc--cCCCCccEEeeecCCCCceeccCC---cccccCCCccccccccc
Q 012933          239 GLRLIDLPKLKRFC--NFTGNI--IELPELQHLTIQNCPDMETFISNS---VVHVTTDNKEPQKLTSE  299 (453)
Q Consensus       239 ~L~L~~~~~l~~~~--~~~~~~--~~l~~L~~L~l~~c~~l~~~~~~~---~~~~~l~~L~~L~l~~~  299 (453)
                      +|++.+|. +++..  .....+  ...++|++|+++++. ++.-....   .+....++|+.|+++++
T Consensus       247 ~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         247 ELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             EEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             hhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            99998875 33210  000112  234679999998864 43311110   11124568999998875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.71  E-value=1.8e-06  Score=80.08  Aligned_cols=62  Identities=19%  Similarity=0.142  Sum_probs=32.0

Q ss_pred             cCCCcCEEeecCCCCcceecccCCc-cc--ccCCCccceeeccCCCccc-----cCCCC-CCCCCCCEEeccc
Q 012933          317 SFPRLRWLELSGLHKVQHLWKENDE-SN--KAFANLESLEISECSKLQK-----LVPPS-WHLENLEALEVSK  380 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~~~~~-~~--~~l~~L~~L~l~~c~~l~~-----l~~~~-~~l~~L~~L~l~~  380 (453)
                      ..++|++|++++| .+++.....+. ..  ...+.|++|+++++ .++.     +...+ .+.++|++|++++
T Consensus       241 ~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         241 SWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             GCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             ccccchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCC
Confidence            4567777777777 34332111100 00  12356777777774 3432     22222 2457788888866

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0011  Score=53.39  Aligned_cols=59  Identities=24%  Similarity=0.184  Sum_probs=36.6

Q ss_pred             cCCCcCEEeecCCCCcceecc--cCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEeccc
Q 012933          317 SFPRLRWLELSGLHKVQHLWK--ENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSK  380 (453)
Q Consensus       317 ~l~~L~~L~l~~~~~l~~l~~--~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~  380 (453)
                      .+|+|++|+++++ +++++..  ..+   ..+++|+.|++++ +.+++++. ......+|++|++.+
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~---~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~  124 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIV---QKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDG  124 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHH---HHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTT
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHH---hhCCccccccccc-CccccchhhhhhhccccceeecCC
Confidence            4577777777777 5665532  112   5677777777777 56666654 122334677777766

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0034  Score=50.36  Aligned_cols=90  Identities=12%  Similarity=0.067  Sum_probs=52.5

Q ss_pred             ccccceeecccccccccccc-ccccccCCCcceEeecCCCCcccccc-CccCCCCcceEEeccccccccccccCCccchh
Q 012933           58 FSKLKVLILDYLPTLTSFCL-ENYTLEFPSLERVSMTHCPNMKTFSH-GILSTPKLHKVQVTEKEEGELHHWEGNKLNST  135 (453)
Q Consensus        58 ~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  135 (453)
                      +++|++|++++ ++++.+.. ......+++|+.|+++++ +++.++. ......+|+.+++.+++-...       ....
T Consensus        64 ~~~L~~L~Ls~-N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~-------~~~~  134 (162)
T d1koha1          64 IPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDT-------FRDQ  134 (162)
T ss_dssp             CTTCCCCCCCS-SCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSS-------SSSH
T ss_pred             CCCCCEeeCCC-ccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcC-------cccc
Confidence            78899999998 44655532 222456899999999886 4665543 223445677777776432100       0001


Q ss_pred             HHHHHHhhcCCCCccEEEEee
Q 012933          136 IQKCYEEMIGFRDMEYLQLSY  156 (453)
Q Consensus       136 ~~~~~~~~~~~~~L~~L~l~~  156 (453)
                      ..-.......+|+|+.|+=..
T Consensus       135 ~~y~~~i~~~~P~L~~LDg~~  155 (162)
T d1koha1         135 STYISAIRERFPKLLRLDGHE  155 (162)
T ss_dssp             HHHHHHHHTTSTTCCEETTEE
T ss_pred             hhHHHHHHHHCCCCCEECcCC
Confidence            111223455678999886433

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.83  E-value=0.097  Score=41.40  Aligned_cols=19  Identities=11%  Similarity=0.071  Sum_probs=10.0

Q ss_pred             HHHHhhcCCCCccEEEEee
Q 012933          138 KCYEEMIGFRDMEYLQLSY  156 (453)
Q Consensus       138 ~~~~~~~~~~~L~~L~l~~  156 (453)
                      .+...+...++|+.++|..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCC
T ss_pred             HHHHHHHhCccccEEeecc
Confidence            3444555556666655543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.67  E-value=0.11  Score=41.11  Aligned_cols=73  Identities=12%  Similarity=-0.016  Sum_probs=38.4

Q ss_pred             HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCC-CccccC---chhHHhhcCCCcEEEecc
Q 012933          138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT-NMSSAI---PANLLRCLNNLQWLEVRN  210 (453)
Q Consensus       138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~-~l~~~~---~~~~l~~l~~L~~L~l~~  210 (453)
                      .+...+...+.++.+++.++.--.+......-.....++|+++++..+. .+.+..   -..++...++|+.|++..
T Consensus        65 ~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          65 ALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            3444445567788888877762221110000011336788888887654 232210   122355777888888755

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.93  E-value=0.077  Score=42.17  Aligned_cols=12  Identities=17%  Similarity=0.229  Sum_probs=6.5

Q ss_pred             ccccceeecccc
Q 012933           58 FSKLKVLILDYL   69 (453)
Q Consensus        58 ~~~L~~L~l~~~   69 (453)
                      .++|++|+++++
T Consensus        14 ~~~L~~L~L~~~   25 (167)
T d1pgva_          14 DTDLKEVNINNM   25 (167)
T ss_dssp             CSSCCEEECTTC
T ss_pred             CCCCcEEEeCCC
Confidence            455556665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.70  E-value=0.15  Score=40.41  Aligned_cols=15  Identities=13%  Similarity=0.441  Sum_probs=9.2

Q ss_pred             ccccceEEeccccch
Q 012933           26 PSSLVNLNVSRCDKI   40 (453)
Q Consensus        26 ~~~L~~L~L~~c~~l   40 (453)
                      .++|+.|+|+++..+
T Consensus        14 ~~~L~~L~L~~~~~i   28 (167)
T d1pgva_          14 DTDLKEVNINNMKRV   28 (167)
T ss_dssp             CSSCCEEECTTCCSS
T ss_pred             CCCCcEEEeCCCCCC
Confidence            466777777665433