Citrus Sinensis ID: 012954

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
Protein Sequence
MVGMGNGRRIGGISISLLSCNCNSNNYLVFPSSVKLKSAAVFGVSLPNPNPWAGVAVFTTFPFRAANDSKNKKVAKAKATSARVGVGMGLVKEKRRTRSNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI
Secondary Structure (PSIPRED)
ccccccccEEccEEEEEEEEEcccccEEEEcccccccccEEEEEEcccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccHHHHccccccccccccHHHHHHcccccccccEEEEccccccHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHcccccccccEEEEEccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHccccccccccHHHHHcccccccccccHHHccccccEEEEEcccccccHHHHHHccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccEEcEEEEEEEEcccccccEEEccccEEEEEEEEEcccccccccccEEEEEEcccccccccccccHEEEEEccccEccccccHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHcccccccccccEEEEEccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHcccccccHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHcccccccccccccHHHcccccccccccEEccccccEEEEEEcccccccHHHHHHccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvgmgngrriGGISISLLScncnsnnylvfpssvklksaavfgvslpnpnpwagvavfttfpfraandskNKKVAKAKATSARVGVGMGLVKEkrrtrsnkdydyESIIQQQQSSHIPVMLGEVLDVfsssrtitsfvdctlgaaghssaiirahpelklhigvdvdpSALAKARAHLNSLlhgqahphlkthtfAKNFRHIKSVLGQIDENILRSGVDAILMDLGmssmqvnnpergfsvlgdgpldmrmdpqaslkaedilnswpdaEVGRVLREYGEESNWHLLQNKIVQARlrgglhstgELVDLIQsvtpgmrgrrqGWIKTATRVFQALRIAVNDELKTLESSLHACfdclapggrlgvisfhsLEDRIVKQTFLSIIDhnredaegneEELRNIRDDNINETWIRQIIQGWngkiltkrpitpsaeeerLNCRCRSAKLRVIQKI
Flexible Loop (DISEMBL)
MVGMGNGRRIGGISISLLSCNCNSNNYLVFPSSVKLKSAAVFGVSLPNPNPWAGVAVFTTFPFRAANDSKNKkvakakatsarvgvgmglvkekrrtrsnkdydYESIIQqqqsshipVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLiqsvtpgmrgrRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSiidhnredaegneeelrnirddninETWIRQIiqgwngkiltkrpitpsaeeerlncrcrsaklrviqki
Low Complexity Region (SEG)
MVGMGNgrriggisisllscncnsnnYLVFPSSVKLKSAAVFGVSLPNPNPWAGVAVFTTFPFRAANDSKNKKVAKAKATSARVGVGMGLVKEKRRTRSNKDYDYEsiiqqqqsshiPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI
Disordered region (IsUnstruct)
********RIGGISISLLSCNCNSNNYLVFPSSVKLKSAAVFGVSLPNPNPWAGVAVFTTFPFRA******************************************II*****SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM*********************************DILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDH**************IRDDNINETWIRQIIQGWNGKILTKRPI**********C*************
Disordered Region (DISOPRED)
********RIGGISISLLSCNCNSNNYLVFPSSVKLKSAAVFGVSLPNPNPWAGVAVFT********************************************************HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGR*QGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIID**************NIRDDNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI
Disordered Region (DISEMBL)
********RIGGISISLLSCNCNSNNYLVFPSSVKLKSAAVFGVSLPNPNPWAGVAVFTTFPFRAAND**************RVGVGMGLVKEKRRTRSNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNRE********LRNIRDDNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI
Disordered Region (DISPRO)
*****NGRRIGGISISLLSCNCNSNNYLVFPSSVKLKSAAVFGVSLPNPNPWAGVAVFTTFPFRAANDSKNKKVAKAKATSARVGVGMGLVKE**RTRSNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRG*RQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCR****K*R*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGMGNGRRIGGISISLLSCNCNSNNYLVFPSSVKLKSAAVFGVSLPNPNPWAGVAVFTTFPFRAANDSKNKKVAKAKATSARVGVGMGLVKEKRRTRSNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	452	2.2.26 [Sep-21-2011]
Q6MEG4	316	Ribosomal RNA small subun	yes	no	0.679	0.971	0.394	6e-57
C6D563	316	Ribosomal RNA small subun	yes	no	0.681	0.974	0.400	7e-54
Q07876	311	Ribosomal RNA small subun	yes	no	0.650	0.945	0.390	1e-52
A8FCX3	310	Ribosomal RNA small subun	yes	no	0.663	0.967	0.400	1e-52
A4J2A3	313	Ribosomal RNA small subun	yes	no	0.663	0.958	0.392	1e-52
Q894B4	310	Ribosomal RNA small subun	yes	no	0.676	0.987	0.376	5e-52
Q65JY8	312	Ribosomal RNA small subun	yes	no	0.674	0.977	0.391	8e-52
A4IM00	310	Ribosomal RNA small subun	yes	no	0.676	0.987	0.389	8e-52
A9VU80	310	Ribosomal RNA small subun	yes	no	0.676	0.987	0.392	2e-51
A5D113	311	Ribosomal RNA small subun	yes	no	0.663	0.964	0.395	2e-51

>sp|Q6MEG4|RSMH_PARUW Ribosomal RNA small subunit methyltransferase H OS=Protochlamydia amoebophila (strain UWE25) GN=rsmH PE=3 SV=1

 Score =  221 bits (564), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 133/337 (39%), Positives = 187/337 (55%), Gaps = 30/337 (8%)

Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
           H  V+L EV++ F   + +  F+D TLGA GH+ AI+  HPE++L++G+D DP+AL  A 
Sbjct: 8   HRSVLLEEVIEAFQPVQ-LKVFIDGTLGAGGHAEAILEHHPEIELYLGIDQDPNALNIAN 66

Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
             L            K      NF      L +I      S +D +L+DLG+SSMQ++ P
Sbjct: 67  KRLEKWKQ-------KILLKQGNFSQFDIFLKEIG----FSSMDGLLVDLGVSSMQLDQP 115

Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
           ERGFS   DGPLDMRM+P+  L A DI+N+W + ++G++ R+YGEE  W L    IVQAR
Sbjct: 116 ERGFSFSKDGPLDMRMNPEGKLTAADIVNTWSEHDLGKIFRDYGEEKKWRLAARTIVQAR 175

Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
               + +T +L +L++   P      +  I   T +FQALRI VN EL  LE  +   FD
Sbjct: 176 QVKQILTTTDLANLLK---PAFAWNPKKGINPLTLIFQALRICVNRELDVLEQLVSKTFD 232

Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
            L PGGR+ VISFHSLEDRIVK   L +   ++ +  G    L   RD            
Sbjct: 233 YLKPGGRVAVISFHSLEDRIVKNE-LRLAASDKWETTGLGSGL--FRDKKP--------- 280

Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
                K++ ++PI P  +E + N R RSAK R+ +K+
Sbjct: 281 ---VAKLVNRKPICPHEKEIKENPRSRSAKFRIAEKL 314

Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
Protochlamydia amoebophila (strain UWE25) (taxid: 264201)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9EC: 9

>sp|C6D563|RSMH_PAESJ Ribosomal RNA small subunit methyltransferase H OS=Paenibacillus sp. (strain JDR-2) GN=rsmH PE=3 SV=1

 Score =  211 bits (538), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 137/342 (40%), Positives = 184/342 (53%), Gaps = 34/342 (9%)

Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
           HI V+L E +D  +  +    +VDCTLG AGHS  I+         I  D D +AL  AR
Sbjct: 4   HITVLLEEAVDGLAI-KPGGIYVDCTLGGAGHSERIVSQLSGGGRLIAFDQDDAALDNAR 62

Query: 176 AHLNSLLHGQAHPHLKTHTFAK-NFRHIKSVLGQIDENILRS--GVDAILMDLGMSSMQV 232
             L         P++   T  K NFR+++ +L   D   +     VD IL DLG+SS Q+
Sbjct: 63  VRLA--------PYMDRVTLVKSNFRYLEEMLLTCDVPTVDGVPQVDGILFDLGVSSPQL 114

Query: 233 NNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIV 292
           +  ERGFS   D PLDMRMD   +L A DI+NSW + E+ R+L  YGEE     +  KIV
Sbjct: 115 DEAERGFSYNHDAPLDMRMDQGGALTAYDIVNSWEEREISRILHVYGEEKFARSIARKIV 174

Query: 293 QARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHA 352
           QAR    + +TGEL +L+++  P    RR G    A R FQALRIAVNDEL   E +L  
Sbjct: 175 QARENAPIETTGELAELVKTGIPAA-ARRTGG-HPAKRSFQALRIAVNDELGAEEDALEE 232

Query: 353 CFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIR 412
              C+ PGGR+ VI+FHSLEDRI KQ F S ++      +                    
Sbjct: 233 AVKCIRPGGRISVITFHSLEDRICKQLFASYVEKCTCPPD------------------FP 274

Query: 413 QIIQGWNGK--ILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
           + + G  GK  ++ ++PI P+ +E  +N R RSAKLRV +K+
Sbjct: 275 KCVCGGTGKLRLVNRKPIVPTEQELEVNPRSRSAKLRVAEKL 316

Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.

Paenibacillus sp. (strain JDR-2) (taxid: 324057)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 9

>sp|Q07876|RSMH_BACSU Ribosomal RNA small subunit methyltransferase H OS=Bacillus subtilis (strain 168) GN=rsmH PE=3 SV=2

 Score =  207 bits (528), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/348 (39%), Positives = 188/348 (54%), Gaps = 54/348 (15%)

Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
           H  V+L E +D  +  +   ++VDCTLG AGHS+ +++   E    I  D D +AL  A+
Sbjct: 4   HKTVLLRETVDGLNI-KPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQHAK 62

Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
             L+    GQ            NFR++K  L +  + +  + VD IL DLG+SS Q++ P
Sbjct: 63  EVLSDY-KGQ------LILIKSNFRYLKEYLNE--QGV--TEVDGILFDLGVSSPQLDTP 111

Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
           ERGFS   D PLDMRMD  A+L A++++N W   ++ R+  +YGEE     +  KI +AR
Sbjct: 112 ERGFSYHHDAPLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEAR 171

Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
           ++  + +TG+LVDLI+   P    RR G    A RVFQA+RIAVNDEL+  E +L    +
Sbjct: 172 MKSPIQTTGQLVDLIKDAIPAP-ARRSGG-HPAKRVFQAIRIAVNDELRVFEEALEQAIE 229

Query: 356 CLAPGGRLGVISFHSLEDRIVKQTF------------LSIIDHNREDAEGNEEELRNIRD 403
            L PGGR+ VI+FHSLEDRI K TF            L +I       E  E EL     
Sbjct: 230 VLKPGGRVSVITFHSLEDRICKTTFKEKSSLPELPPGLPVI------PEEFEPEL----- 278

Query: 404 DNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
                            K++T++PIT S EE   N R RSAKLR+ +K
Sbjct: 279 -----------------KLITRKPITASQEELEENNRARSAKLRIAEK 309

Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 9

>sp|A8FCX3|RSMH_BACP2 Ribosomal RNA small subunit methyltransferase H OS=Bacillus pumilus (strain SAFR-032) GN=rsmH PE=3 SV=1

 Score =  207 bits (527), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/342 (40%), Positives = 183/342 (53%), Gaps = 42/342 (12%)

Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
           H  V+L E +D  +     T +VDCTLG AGHSS ++    E    IG D D +AL  AR
Sbjct: 4   HETVLLKETVDGLNVKEDGT-YVDCTLGGAGHSSYLLSQLSEKGTLIGFDQDDAALDHAR 62

Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
             L       A           NFR++K  L +  + I  + VD ++ DLG+SS Q++ P
Sbjct: 63  EKL-------AGSKANILFIKSNFRYLKERLNE--QGI--TSVDGVIFDLGVSSPQLDTP 111

Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
           ERGFS   D PLDMRMD  A+L A+ ++N WP  ++ R+  +YGEE     +  KI +AR
Sbjct: 112 ERGFSYHHDAPLDMRMDQSAALSAKKVVNEWPFEDLVRIFYKYGEEKFSKQIARKIEEAR 171

Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
            +  + +TGELVD+I+   P    RR G    A RVFQA+RIAVNDELK  E +L    +
Sbjct: 172 KKAPIETTGELVDIIKEGIPAP-ARRTGG-HPAKRVFQAIRIAVNDELKVFEEALEQAIE 229

Query: 356 CLAPGGRLGVISFHSLEDRIVKQTF-----LSIIDHNRE-DAEGNEEELRNIRDDNINET 409
            L P GR+ VI+FHSLEDRI K TF     L  + H      EG E +L           
Sbjct: 230 LLNPKGRISVITFHSLEDRICKSTFREMSSLPELPHGLPVIPEGLEPKL----------- 278

Query: 410 WIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
                      K++T++PI  S +E   N R RSAKLR+ +K
Sbjct: 279 -----------KLITRKPIVASEQELEHNNRARSAKLRIAEK 309

Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.

Bacillus pumilus (strain SAFR-032) (taxid: 315750)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 9

>sp|A4J2A3|RSMH_DESRM Ribosomal RNA small subunit methyltransferase H OS=Desulfotomaculum reducens (strain MI-1) GN=rsmH PE=3 SV=1

 Score =  207 bits (527), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/344 (39%), Positives = 191/344 (55%), Gaps = 44/344 (12%)

Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIR-AHPELKLHIGVDVDPSALAKA 174
           H+ V+L E +D     +    +VDCTLG AGHS  I+R   PE KL +G+D DP+A+A A
Sbjct: 5   HVSVLLHESIDGLKI-KPGGIYVDCTLGGAGHSLEILRRLGPEGKL-VGIDQDPAAIANA 62

Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
              L     GQ       H   +NF  IK +L      +  S VD IL DLG+SS Q++ 
Sbjct: 63  AEKLQEF-PGQ------FHAVQRNFFQIKQIL----REMAISEVDGILFDLGVSSYQLDT 111

Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
           PERGFS + D  LDMRM P  ++ A++++N   + E+  ++R YGE+     + + IV+ 
Sbjct: 112 PERGFSYMHDAELDMRMGPDQTISAKELVNDISEEELATIIRRYGEDRWAKRIASFIVKE 171

Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
           R +  +H+TGELVD+I++  P +  RR+G    A R FQALRIAVN+EL+ LE ++    
Sbjct: 172 RKKRAIHTTGELVDIIKAAVP-VGARREGP-HPAKRTFQALRIAVNNELEILEQTMKDAV 229

Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNRED------AEGNEEELRNIRDDNINE 408
             L  GGR+ VI+FHSLEDRI+K TF  + +           A G + ++          
Sbjct: 230 TALKSGGRISVITFHSLEDRIIKDTFKELANPCTCPPAFPVCACGKQPQI---------- 279

Query: 409 TWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
                       KI+T +PI PS EE   N R RSAKLR+ +K+
Sbjct: 280 ------------KIVTGKPIQPSKEELEHNPRARSAKLRIAEKL 311

Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.

Desulfotomaculum reducens (strain MI-1) (taxid: 349161)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 9

>sp|Q894B4|RSMH_CLOTE Ribosomal RNA small subunit methyltransferase H OS=Clostridium tetani (strain Massachusetts / E88) GN=rsmH PE=3 SV=1

 Score =  205 bits (522), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 127/337 (37%), Positives = 190/337 (56%), Gaps = 31/337 (9%)

Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
           HI V+L E ++  +       +VDCTLG AGHSS I++   +    IG+D D  AL  A 
Sbjct: 5   HISVLLDECIEGLNIKEN-GIYVDCTLGGAGHSSEILKNLSKEGKLIGIDQDEEALKAAS 63

Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
             L      +    L  H+   NF HIK +L +++       VD ILMDLG+SS Q++  
Sbjct: 64  EKLK-----EYENVLYKHS---NFYHIKDILEELE----VGKVDGILMDLGVSSYQLDEK 111

Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
            RGFS + + PLDMRM+ ++SL A +++N + ++++ R++++YGEE     + N IV++R
Sbjct: 112 SRGFSYMQNAPLDMRMNKKSSLDAYEVVNFYDESKLARIIKDYGEERFAKRISNFIVESR 171

Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
               + +TGELVD+I+   P  + RR+G    A R FQA+RI VN EL+ L  ++     
Sbjct: 172 ENKKIETTGELVDIIKRAIPA-KFRREGP-HPAKRTFQAIRIEVNGELEILNKAIEDSVK 229

Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
            L  GGR+ +I+FHSLEDRIVK  F  +           E+     +D  I       ++
Sbjct: 230 SLKSGGRIAIITFHSLEDRIVKNKFKEL-----------EDPCICPKDFPICTCGKEPLV 278

Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
                KI+T++PI PS EE  +N R RSAKLR+ +K+
Sbjct: 279 -----KIITRKPIDPSKEEVEINPRSRSAKLRIAEKL 310

Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.

Clostridium tetani (strain Massachusetts / E88) (taxid: 212717)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 9

>sp|Q65JY8|RSMH_BACLD Ribosomal RNA small subunit methyltransferase H OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rsmH PE=3 SV=1

 Score =  204 bits (520), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 185/337 (54%), Gaps = 32/337 (9%)

Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
           H  V+L E +D  +     T +VDCTLG AGHS  ++    E    +  D D +AL  A+
Sbjct: 4   HTTVLLKETVDGLNVKEDGT-YVDCTLGGAGHSEYLLSQLSEKGKLVAFDQDETALRHAK 62

Query: 176 AHLNSLLHGQAHPHLKTHTFAK-NFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
             L     GQ         F K NFR++K  L +I      + VD +L DLG+SS Q++ 
Sbjct: 63  EKLADY-EGQV-------VFIKSNFRYLKDRLNEIG----ITKVDGVLFDLGVSSPQLDT 110

Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
           PERGFS   D PLDMRMD  A L A++++N WP  ++ ++  +YGEE     +  KI +A
Sbjct: 111 PERGFSYHHDAPLDMRMDQSAGLSAKEVVNEWPYEDLVKIFFKYGEEKFSKQIARKIEKA 170

Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
           R +  + +TG+LVD+I+   P    RR G    A R+FQA+RIAVNDEL+  E +L    
Sbjct: 171 REQSPIETTGQLVDIIKEAIPAP-ARRSGG-HPAKRIFQAIRIAVNDELRVFEEALLQAI 228

Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
           + L PGGR+ VI+FHSLEDRI K TF        +D     E    +    I + +  ++
Sbjct: 229 EVLKPGGRVSVITFHSLEDRICKSTF--------KDMSSPPELPHGL--PVIPKEFEPKL 278

Query: 415 IQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
                 K++ ++PIT S EE   N R RSAKLR+ +K
Sbjct: 279 ------KLVNRKPITASEEELEHNNRARSAKLRIAEK 309

Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.

Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 9

>sp|A4IM00|RSMH_GEOTN Ribosomal RNA small subunit methyltransferase H OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rsmH PE=3 SV=1

 Score =  204 bits (520), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 180/336 (53%), Gaps = 30/336 (8%)

Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
           H  V+L E +D  +  R    +VDCTLG  GHS  ++    +       D D +A+  A 
Sbjct: 4   HTTVLLKEAVDGLNV-RPDGVYVDCTLGGGGHSEYLLSRLSKRGKLFAFDQDETAILHAS 62

Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
             L       A    +     +NFR ++  L  +  +     VD IL DLG+SS Q++ P
Sbjct: 63  ERL-------ARYREQVQFINRNFRFLQEELSALGIH----AVDGILFDLGVSSPQLDEP 111

Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
           ERGFS   D PLDMRMD +  L A +I+N WP  E+ R+   YGEE     +  KI + R
Sbjct: 112 ERGFSYQHDAPLDMRMDRKQRLTAAEIVNRWPYEELVRIFFRYGEEKFSKQVARKIEEVR 171

Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
            +  + +TGELV++I++  P    RR G    A R+FQALRIAVNDEL+    +L    +
Sbjct: 172 RKRPIETTGELVEVIKAAIPAP-ARRSGG-HPAKRIFQALRIAVNDELEAFREALEQAIE 229

Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
            LAPGGR+ VI+FHSLEDRI K+TF         ++      L  + DD       R ++
Sbjct: 230 LLAPGGRVSVITFHSLEDRICKETF-----KKASESPPLPPGLPVLPDD------YRPVL 278

Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
                KI+TK+P+ PSAEE   N R RSAKLR+ +K
Sbjct: 279 -----KIITKKPVVPSAEELERNNRARSAKLRIAEK 309

Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.

Geobacillus thermodenitrificans (strain NG80-2) (taxid: 420246)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 9

>sp|A9VU80|RSMH_BACWK Ribosomal RNA small subunit methyltransferase H OS=Bacillus weihenstephanensis (strain KBAB4) GN=rsmH PE=3 SV=1

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 179/336 (53%), Gaps = 30/336 (8%)

Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
           H+ V+L E +D      + T +VDCTLG  GHSS ++    +    I  D D  A+  A+
Sbjct: 4   HVTVLLKETVDGLDIKPSGT-YVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAK 62

Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
              +S  +G+    +K+     NFR++   L ++      + VD IL DLG+SS Q++ P
Sbjct: 63  EKFSS--YGEQFVTVKS-----NFRYLSEKLHELG----ITEVDGILFDLGVSSPQLDTP 111

Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
           ERGFS   D PLDMRMD  A L A D++NSW   ++ R+  +YGEE     +  KI   R
Sbjct: 112 ERGFSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQITRKIEAYR 171

Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
               + +TGELV+LI+   P    RR G    A RVFQA+RIAVNDELK  E +L +  D
Sbjct: 172 ENKAIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAID 229

Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
            + PGGR+ VI+FHSLEDRI K TF       R        +   I  D           
Sbjct: 230 MVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPQGLPIIPDEFKPKL----- 278

Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
                K++T++PI PS  E   N R RSAKLR+ +K
Sbjct: 279 -----KLITRKPILPSDIELEENNRARSAKLRIAEK 309

Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.

Bacillus weihenstephanensis (strain KBAB4) (taxid: 315730)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 9

>sp|A5D113|RSMH_PELTS Ribosomal RNA small subunit methyltransferase H OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rsmH PE=3 SV=1

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/344 (39%), Positives = 188/344 (54%), Gaps = 44/344 (12%)

Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAII-RAHPELKLHIGVDVDPSALAKA 174
           H PVML EVL+  +  +    +VDCT+G AGH  AI+ R   E +L IG+D DP ALA A
Sbjct: 5   HRPVMLDEVLEGLNL-KPGGVYVDCTVGGAGHGEAILKRTGAEGRL-IGIDRDPEALAAA 62

Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
              L  + +G+     +      NF  I  VL    E + ++GVD IL DLG+SS Q++N
Sbjct: 63  ERRL--VPYGK-----RVDLVRANFEDIGKVL----ERLGQTGVDGILFDLGVSSYQLDN 111

Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
           P RGFS   D  LDMRMDP+    A +++N+    E+ R++++YGEE     +   IV+ 
Sbjct: 112 PARGFSYKRDSLLDMRMDPERGPSARELVNTLTAEELARIIKDYGEERWAFRIAAFIVEE 171

Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
           R R  + +TG L ++I+   P   G R+     A R FQALRIAVN EL+ L  +L +  
Sbjct: 172 RKRSPIETTGRLAEIIKKAIPA--GARREGPHPARRTFQALRIAVNRELEVLGGALRSAV 229

Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAE------GNEEELRNIRDDNINE 408
             L PGGR+ VI++HSLEDRIVK+TF  +        E      G ++E+          
Sbjct: 230 RVLRPGGRICVITYHSLEDRIVKETFRRLASPCTCPKEFPACVCGGKKEI---------- 279

Query: 409 TWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
                       KI+T RP+ PSA E   N R RSAKLR+ +K+
Sbjct: 280 ------------KIVTARPVVPSAGEVEENPRARSAKLRIAEKL 311

Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.

Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) (taxid: 370438)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
255558644	405	s-adenosyl-methyltransferase mraw, putat	0.783	0.874	0.709	1e-147
225429894	444	PREDICTED: ribosomal RNA small subunit m	0.792	0.806	0.701	1e-141
224082310	435	predicted protein [Populus trichocarpa]	0.792	0.822	0.701	1e-141
356541354	418	PREDICTED: ribosomal RNA small subunit m	0.816	0.882	0.664	1e-136
356552558	418	PREDICTED: ribosomal RNA small subunit m	0.778	0.842	0.668	1e-133
449437088	448	PREDICTED: ribosomal RNA small subunit m	0.787	0.794	0.651	1e-132
296081823	324	unnamed protein product [Vitis vinifera]	0.688	0.959	0.703	1e-129
297807119	434	mraW methylase family protein [Arabidops	0.807	0.841	0.638	1e-125
15238896	434	mraW methylase family protein [Arabidops	0.785	0.817	0.644	1e-124
115444103	436	Os02g0137600 [Oryza sativa Japonica Grou	0.785	0.814	0.631	1e-123

>gi|255558644|ref|XP_002520347.1| s-adenosyl-methyltransferase mraw, putative [Ricinus communis] gi|223540566|gb|EEF42133.1| s-adenosyl-methyltransferase mraw, putative [Ricinus communis]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/361 (70%), Positives = 302/361 (83%), Gaps = 7/361 (1%)

Query: 92  KEKRRTRSNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAI 151
           KEKRRTRS+K+++Y     ++  +H+PV+LGEV+DVFSS   + SFVDCTLGAAGHSSAI
Sbjct: 52  KEKRRTRSDKEFEY-----KENDNHVPVLLGEVIDVFSSLH-LRSFVDCTLGAAGHSSAI 105

Query: 152 IRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE 211
           I+ HPEL+ ++G+DVDP A AKARA ++ L+H  +  HLK HTF  NF+H+K +L ++D 
Sbjct: 106 IKGHPELENYVGMDVDPVAHAKARACIDDLMHSHS-CHLKVHTFLSNFKHVKPLLAEVDP 164

Query: 212 NILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEV 271
           N   SGVDAILMDLGMSSMQVNNPERGFSVL +GPLDMRMDPQASLKAEDILNSWPD EV
Sbjct: 165 NFFNSGVDAILMDLGMSSMQVNNPERGFSVLANGPLDMRMDPQASLKAEDILNSWPDTEV 224

Query: 272 GRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRV 331
           GRVLREYGEESNWHLLQNKIVQARLRGGLH+TG+LVDLI+++T G RG RQGWIKTATRV
Sbjct: 225 GRVLREYGEESNWHLLQNKIVQARLRGGLHTTGDLVDLIRNMTHGTRGGRQGWIKTATRV 284

Query: 332 FQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDA 391
           FQALRIAVNDEL TLE +L+ACF+CLAPGGRL VISFHSLEDRIVKQTFL +I+  R D 
Sbjct: 285 FQALRIAVNDELGTLEKTLNACFECLAPGGRLAVISFHSLEDRIVKQTFLKVIETGRGDG 344

Query: 392 EGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
           + +EEE       N  E WI+ ++QG NG+ILTKRP+TPS EEERLN R RSAKLRV++K
Sbjct: 345 DADEEERFGRDSRNSEEMWIKSVVQGRNGRILTKRPVTPSEEEERLNRRSRSAKLRVVEK 404

Query: 452 I 452
           +
Sbjct: 405 V 405

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429894|ref|XP_002283626.1| PREDICTED: ribosomal RNA small subunit methyltransferase H-like [Vitis vinifera]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/375 (70%), Positives = 304/375 (81%), Gaps = 17/375 (4%)

Query: 92  KEKRRTRSNKDYDYE-SIIQQQQSSHIPVMLGEVLDVFSSSRT------ITSFVDCTLGA 144
           K K+RTRS++++D E +++    ++H+PVMLGEVL+VFSS  +      + SFVDCTLGA
Sbjct: 71  KLKKRTRSDREFDKEQAMVYGGTATHVPVMLGEVLEVFSSFSSSSSSSPLRSFVDCTLGA 130

Query: 145 AGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS 204
           AGHSSAII+AHPEL+L++G+DVDP A  KA+A + SL    +H  LK HTF +NF++IKS
Sbjct: 131 AGHSSAIIQAHPELELYVGMDVDPIAHEKAQARIRSLCGDSSH--LKAHTFMRNFKNIKS 188

Query: 205 VLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILN 264
           VL ++DE +L SGVD ILMDLGMSSMQVNN ERGFSVL +GPLDMRMDPQASL AEDILN
Sbjct: 189 VLREVDEELLSSGVDGILMDLGMSSMQVNNAERGFSVLANGPLDMRMDPQASLTAEDILN 248

Query: 265 SWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGW 324
           SWPD EVGR+LREYGEESNW  LQNKIV+ARL GGLHSTGELVDLI+  TP  RG RQGW
Sbjct: 249 SWPDTEVGRILREYGEESNWRSLQNKIVKARLFGGLHSTGELVDLIRKTTPRTRGGRQGW 308

Query: 325 IKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSII 384
           IKTATRVFQALRIAVNDELKTLE SL+ACF+CL PGGRL VISFHSLEDRIVKQTFL II
Sbjct: 309 IKTATRVFQALRIAVNDELKTLEDSLYACFECLTPGGRLAVISFHSLEDRIVKQTFLDII 368

Query: 385 DHN-------REDAEGNEEELRNIRDDNI-NETWIRQIIQGWNGKILTKRPITPSAEEER 436
           + N           EG  ++LRNIR+DN   E WI+Q++QGWNG ILTKRPITPS EEER
Sbjct: 369 NSNGEDESGEGGGQEGCGKDLRNIRNDNDEKEAWIKQMVQGWNGTILTKRPITPSEEEER 428

Query: 437 LNCRCRSAKLRVIQK 451
           LN R RSAKLRVIQK
Sbjct: 429 LNRRSRSAKLRVIQK 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082310|ref|XP_002306643.1| predicted protein [Populus trichocarpa] gi|222856092|gb|EEE93639.1| predicted protein [Populus trichocarpa]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 259/369 (70%), Positives = 298/369 (80%), Gaps = 11/369 (2%)

Query: 92  KEKRRTRSNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAI 151
           KEKRRTRS K+Y+      + +S H+PVMLGEV+DVFSS   + SF+DCTLGAAGHSSAI
Sbjct: 69  KEKRRTRSEKEYEELHSFHETES-HVPVMLGEVVDVFSSL-PLRSFIDCTLGAAGHSSAI 126

Query: 152 IRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE 211
           I+ HPEL+ +IG+DVDP A AKARAH+++LL       LK H   KNF++IKSV+G+ID+
Sbjct: 127 IKGHPELECYIGMDVDPVAHAKARAHIDALLQS-TRSSLKPHLLFKNFKYIKSVVGEIDD 185

Query: 212 N--ILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDA 269
           +  +L SGVD ILMDLGMSSMQVNNP+RGFSVL +GPLDMRMDP+AS+KA+DILN WPD 
Sbjct: 186 DCKLLSSGVDGILMDLGMSSMQVNNPQRGFSVLANGPLDMRMDPRASVKAKDILNYWPDD 245

Query: 270 EVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTAT 329
           EVGR+LREYGEESNW  LQ KIVQAR +GGLHST EL DLIQ  T G +G RQGWIKTAT
Sbjct: 246 EVGRILREYGEESNWRWLQKKIVQARQQGGLHSTSELRDLIQGATHGTKGGRQGWIKTAT 305

Query: 330 RVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNRE 389
           RVFQALRIAVNDEL TLE SLHACF+CL PGGRL VISFHSLEDRIVKQTFL II+ N  
Sbjct: 306 RVFQALRIAVNDELNTLEKSLHACFECLVPGGRLAVISFHSLEDRIVKQTFLKIIESNGG 365

Query: 390 DAEGNEEE-----LRNIRDD-NINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRS 443
           D +  EEE     LR +R+D +  ETWIRQ++QG NG ILTKRPITPS EEERLN R RS
Sbjct: 366 DGDVVEEEAGKRDLRKMRNDIDAKETWIRQMVQGQNGTILTKRPITPSEEEERLNRRSRS 425

Query: 444 AKLRVIQKI 452
           AKLRVI+KI
Sbjct: 426 AKLRVIEKI 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541354|ref|XP_003539142.1| PREDICTED: ribosomal RNA small subunit methyltransferase H-like [Glycine max]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/396 (66%), Positives = 306/396 (77%), Gaps = 27/396 (6%)

Query: 69  SKNKKVAKAKATSARVGVGMGLVKEKRRTRSNKDYDYESIIQQ---------QQSSHIPV 119
           +K++K  K  A +A       L KEKRRTRS+K ++ ++II++          + SH+PV
Sbjct: 36  TKHQKNKKENAKAA-------LAKEKRRTRSDKQFNRDAIIERCRINDIDTDTKFSHVPV 88

Query: 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLN 179
           MLGEVLDVFS+S T+TSFVDCTLGAAGHS+A+IR HPELK  +G+DVD  A   A+  L+
Sbjct: 89  MLGEVLDVFSNS-TLTSFVDCTLGAAGHSTAVIRGHPELKYLVGMDVDSLAHDIAQPRLD 147

Query: 180 SLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGF 239
           ++L+      +K  T  +NFR +KSVL +I E  L  GVDAILMDLGMSSMQV++P RGF
Sbjct: 148 AVLNA----GVKAITVLRNFRDVKSVLREIAELHL-LGVDAILMDLGMSSMQVDDPARGF 202

Query: 240 SVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGG 299
           SVLGDGPLDMRMDPQASLKAEDILNSWPD+EVGR+LREYGEESNW  LQ KIV ARL GG
Sbjct: 203 SVLGDGPLDMRMDPQASLKAEDILNSWPDSEVGRILREYGEESNWRTLQKKIVNARLYGG 262

Query: 300 LHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAP 359
           LHST +L+DLI+ VTP M+G RQGWIKTATRVFQALRIAVNDELKTLE SL++CFDCLAP
Sbjct: 263 LHSTSDLLDLIRRVTPPMKGGRQGWIKTATRVFQALRIAVNDELKTLEDSLYSCFDCLAP 322

Query: 360 GGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNE---EELRNIRDD-NINETWIRQII 415
           GGRL VISFHSLEDRIVKQTFL+II   RED E  E     LRN  D+    E WI+Q+I
Sbjct: 323 GGRLAVISFHSLEDRIVKQTFLNII-KGREDVEERESLNSVLRNTSDEIKEKEAWIKQVI 381

Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
            G NG ILTKRPITPS EEE+LN R RSAKLRVIQK
Sbjct: 382 YGSNGTILTKRPITPSGEEEKLNRRSRSAKLRVIQK 417

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552558|ref|XP_003544633.1| PREDICTED: ribosomal RNA small subunit methyltransferase H-like [Glycine max]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 248/371 (66%), Positives = 293/371 (78%), Gaps = 19/371 (5%)

Query: 93  EKRRTRSNKDYDYESIIQQ---------QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLG 143
           EKRRTRS+K +++++II++          + SH+PVMLGEVLDVFSS+  +TSFVDCTLG
Sbjct: 54  EKRRTRSDKQFNHDAIIERCNINDTDTDTKFSHVPVMLGEVLDVFSST-FLTSFVDCTLG 112

Query: 144 AAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIK 203
           AAGHS+A+I+ H ELK  +G+DVD  A   A+  L+++L+G     +K  T  +NFR +K
Sbjct: 113 AAGHSTAVIKGHQELKYFVGMDVDSVAHDIAQPRLDAVLNGG----VKAITVLRNFRDVK 168

Query: 204 SVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDIL 263
           SVL + DE  L+ GVD ILMDLG+SSMQV++P RGFSVLGDGPLDMRMDPQASLKAEDIL
Sbjct: 169 SVLREFDE--LKLGVDGILMDLGISSMQVDDPVRGFSVLGDGPLDMRMDPQASLKAEDIL 226

Query: 264 NSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQG 323
           NSWPD+EVGR+LREYGEESNW  LQ KIV ARL GGLHST +L+DLI+ V P MRG RQG
Sbjct: 227 NSWPDSEVGRILREYGEESNWRTLQKKIVNARLHGGLHSTSDLLDLIRRVAPPMRGGRQG 286

Query: 324 WIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSI 383
           WIKTATRVFQALRIAVNDELKTLE SL+ CFDCLAPGGRL VISFHSLEDRIVKQTFL+I
Sbjct: 287 WIKTATRVFQALRIAVNDELKTLEDSLYYCFDCLAPGGRLAVISFHSLEDRIVKQTFLNI 346

Query: 384 IDHNR--EDAEGNEEELRNIRDD-NINETWIRQIIQGWNGKILTKRPITPSAEEERLNCR 440
           I  ++  E+ E    +LR   D+    E WI+Q+I G NG ILTKRPITPS EEE+LN R
Sbjct: 347 IKGSKDVEERESLNSDLRKTSDEIKEKEAWIKQVIYGSNGTILTKRPITPSGEEEKLNRR 406

Query: 441 CRSAKLRVIQK 451
            RSAKLRVIQK
Sbjct: 407 SRSAKLRVIQK 417

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437088|ref|XP_004136324.1| PREDICTED: ribosomal RNA small subunit methyltransferase H-like [Cucumis sativus] gi|449505500|ref|XP_004162490.1| PREDICTED: ribosomal RNA small subunit methyltransferase H-like [Cucumis sativus]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/367 (65%), Positives = 288/367 (78%), Gaps = 11/367 (2%)

Query: 89  GLVKEKRRTRSNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSS--RTITSFVDCTLGAAG 146
            LVKEKRRTRS K++D  +I     ++HIPVML EVLDVF+SS  R + SFVDCT+GA G
Sbjct: 84  ALVKEKRRTRSTKEFDENAIPIGDTAAHIPVMLAEVLDVFASSSGRPLRSFVDCTVGAGG 143

Query: 147 HSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVL 206
           HSSAII+AHPEL  ++G+DVDP AL KA+  ++      +   LK +   KNF+++KS+L
Sbjct: 144 HSSAIIQAHPELNFYMGMDVDPIALDKAQDRISDFFSEDSD--LKAYIVLKNFKYVKSLL 201

Query: 207 GQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSW 266
              DE  L  GVD ++MDLGMSSMQV++PERGF VLGDGPLDMRMDPQASLKAEDILN+W
Sbjct: 202 ADSDEKPLDPGVDGMMMDLGMSSMQVDDPERGFRVLGDGPLDMRMDPQASLKAEDILNNW 261

Query: 267 PDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIK 326
           P+ EVGR+LR YGEESNW+ LQNKIV+AR +GGLHST +L+DLI+  T G +G RQGWIK
Sbjct: 262 PETEVGRILRVYGEESNWYSLQNKIVKARSQGGLHSTTQLLDLIRKSTLGFKGGRQGWIK 321

Query: 327 TATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDH 386
           TATRVFQALRIAVNDEL  L++SL+ CFDCLAPGGRL VISFHSLEDR+VKQTFL II+ 
Sbjct: 322 TATRVFQALRIAVNDELNVLQNSLYTCFDCLAPGGRLAVISFHSLEDRVVKQTFLDIINP 381

Query: 387 NREDAEGNEE--ELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSA 444
                EG+E+  E+  I ++  NE WI+Q ++G  G +LTKRPITPS EEERLN R RSA
Sbjct: 382 K---TEGDEDGGEVTKIMEE--NEEWIKQTVKGLKGTVLTKRPITPSEEEERLNRRSRSA 436

Query: 445 KLRVIQK 451
           KLRVIQK
Sbjct: 437 KLRVIQK 443

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081823|emb|CBI20828.3| unnamed protein product [Vitis vinifera]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/344 (70%), Positives = 270/344 (78%), Gaps = 33/344 (9%)

Query: 114 SSHIPVMLGEVLDVFSSSRT------ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVD 167
           ++H+PVMLGEVL+VFSS  +      + SFVDCTLGAAGHSSAII+AHPEL+L++G+DVD
Sbjct: 7   ATHVPVMLGEVLEVFSSFSSSSSSSPLRSFVDCTLGAAGHSSAIIQAHPELELYVGMDVD 66

Query: 168 PSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM 227
           P A  KA+A + SL    +H  LK HTF +NF++IKSVL ++DE +L SGVD ILMDLGM
Sbjct: 67  PIAHEKAQARIRSLCGDSSH--LKAHTFMRNFKNIKSVLREVDEELLSSGVDGILMDLGM 124

Query: 228 SSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLL 287
           SSMQVNN ERGFSVL +GPLDMRMDPQASL AEDILNSWPD EVGR+LREYGEESNW  L
Sbjct: 125 SSMQVNNAERGFSVLANGPLDMRMDPQASLTAEDILNSWPDTEVGRILREYGEESNWRSL 184

Query: 288 QNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLE 347
           QNKIV+ARL GGLHSTGELVDLI+  TP  RG RQGWIKTATRVFQALRIAVNDELKTLE
Sbjct: 185 QNKIVKARLFGGLHSTGELVDLIRKTTPRTRGGRQGWIKTATRVFQALRIAVNDELKTLE 244

Query: 348 SSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNIN 407
            SL+ACF+CL PGGRL VISFHSLEDRIVKQTFL II+ N ED                 
Sbjct: 245 DSLYACFECLTPGGRLAVISFHSLEDRIVKQTFLDIINSNGED----------------- 287

Query: 408 ETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
                   + WNG ILTKRPITPS EEERLN R RSAKLRVIQK
Sbjct: 288 --------ERWNGTILTKRPITPSEEEERLNRRSRSAKLRVIQK 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807119|ref|XP_002871443.1| mraW methylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297317280|gb|EFH47702.1| mraW methylase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/384 (63%), Positives = 294/384 (76%), Gaps = 19/384 (4%)

Query: 77  AKATSARVGVGMGLVKEKRRTRSNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITS 136
           AKAT+  V     + KEKRRTRS+++Y+      +  SSH+PVMLGEVLD+FSS R + S
Sbjct: 62  AKATAEAV-----VNKEKRRTRSSREYEIADG-DEVPSSHVPVMLGEVLDIFSSVR-LRS 114

Query: 137 FVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA 196
           FVDCTLGAAGHSS+II++H ELK  +G+DVDP A      H++SL+H    P LK     
Sbjct: 115 FVDCTLGAAGHSSSIIQSHSELKHFVGMDVDPVARKLGHFHIDSLMH----PTLKASIVL 170

Query: 197 KNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQAS 256
           KNF++IKSV+      +L  GVD ILMDLGMSSMQVNNP+RGFSVL +GPLDMRMDPQA+
Sbjct: 171 KNFKYIKSVVADTQPELLDVGVDGILMDLGMSSMQVNNPQRGFSVLQEGPLDMRMDPQAT 230

Query: 257 LKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPG 316
           L AEDI+NSWP++E+GRVLR+YGEESNWHLLQ +IV+ARL GGLHSTGELVDLI+ ++P 
Sbjct: 231 LTAEDIVNSWPESELGRVLRDYGEESNWHLLQTRIVKARLNGGLHSTGELVDLIRGMSPA 290

Query: 317 MRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIV 376
            RG RQGWIKTATRVFQ LRIAVNDELKTL++SL++ FD L PGGRL VISFHSLEDR+V
Sbjct: 291 GRGGRQGWIKTATRVFQGLRIAVNDELKTLQNSLYSSFDVLGPGGRLAVISFHSLEDRVV 350

Query: 377 KQTFLSIIDHNRED--AEGN------EEELRNIRDDNINETWIRQIIQGWNGKILTKRPI 428
           KQTFL+I+   RE+   EGN      + E R  ++    E WI+Q + G  G ILTKRPI
Sbjct: 351 KQTFLNILGFQREEINGEGNSVKPERQIEERVEKELKEKEAWIKQTVIGSKGVILTKRPI 410

Query: 429 TPSAEEERLNCRCRSAKLRVIQKI 452
           TPS EEERLN R RSAKLRVIQK+
Sbjct: 411 TPSEEEERLNRRARSAKLRVIQKL 434

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238896|ref|NP_196652.1| mraW methylase family protein [Arabidopsis thaliana] gi|8979725|emb|CAB96846.1| putative protein [Arabidopsis thaliana] gi|16604434|gb|AAL24223.1| AT5g10910/T30N20_180 [Arabidopsis thaliana] gi|28416479|gb|AAO42770.1| At5g10910/T30N20_180 [Arabidopsis thaliana] gi|332004225|gb|AED91608.1| mraW methylase family protein [Arabidopsis thaliana]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/369 (64%), Positives = 281/369 (76%), Gaps = 14/369 (3%)

Query: 92  KEKRRTRSNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAI 151
           KEKRRTRS++ Y+      +  SSH+PVMLGEVLD+FSS R + SFVDCTLGAAGHSS+I
Sbjct: 72  KEKRRTRSSRGYELADG-DEVPSSHVPVMLGEVLDIFSSVR-LRSFVDCTLGAAGHSSSI 129

Query: 152 IRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE 211
           I++H ELK  +G+DVDP A      H++SL+H    P LK     KNF++IKSV+     
Sbjct: 130 IQSHSELKNFVGMDVDPVARKLGHFHIDSLMH----PTLKASIVLKNFKYIKSVIADTQP 185

Query: 212 NILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEV 271
            +L  GVD ILMDLGMSSMQVNNPERGFSVL +GPLDMRMDPQA+L AEDI+NSWP++E+
Sbjct: 186 ELLDVGVDGILMDLGMSSMQVNNPERGFSVLQEGPLDMRMDPQATLTAEDIVNSWPESEL 245

Query: 272 GRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRV 331
           GRVLR+YGEESNW+LLQN+IV+ARL GGLHSTGELVDLI+  +P  RG RQGWIKTATRV
Sbjct: 246 GRVLRDYGEESNWYLLQNRIVKARLNGGLHSTGELVDLIRGTSPASRGGRQGWIKTATRV 305

Query: 332 FQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDA 391
           FQ LRIAVNDELKTL++SL++ FD LAPGGRL VISFHSLEDR+VKQTFL I+   RE+ 
Sbjct: 306 FQGLRIAVNDELKTLQNSLYSSFDVLAPGGRLAVISFHSLEDRVVKQTFLDILGFQREEI 365

Query: 392 EGNEEELRNIRD--------DNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRS 443
            G    ++  R             E WI+Q +    G ILTKRPITPS EEERLN R RS
Sbjct: 366 NGEGSSVKPERQIEERVEKELKEKEEWIKQTVIASKGVILTKRPITPSEEEERLNRRARS 425

Query: 444 AKLRVIQKI 452
           AKLRVIQK+
Sbjct: 426 AKLRVIQKL 434

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115444103|ref|NP_001045831.1| Os02g0137600 [Oryza sativa Japonica Group] gi|42409129|dbj|BAD10379.1| putative methyltransferase [Oryza sativa Japonica Group] gi|42409260|dbj|BAD10523.1| putative methyltransferase [Oryza sativa Japonica Group] gi|113535362|dbj|BAF07745.1| Os02g0137600 [Oryza sativa Japonica Group] gi|125538002|gb|EAY84397.1| hypothetical protein OsI_05773 [Oryza sativa Indica Group]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/369 (63%), Positives = 278/369 (75%), Gaps = 14/369 (3%)

Query: 94  KRRTRSNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIR 153
           KRRTRS   +D     +   + H+PVMLGEVL  F     + SFVDCTLGAAGHS A++ 
Sbjct: 70  KRRTRSGAAFDAGLYRRHSHAEHVPVMLGEVLAAFRRPLPLRSFVDCTLGAAGHSLAMME 129

Query: 154 AHPELKLHIGVDVDPSALAKARAHLNSLLHGQ---------AHPHLKTHTFAKNFRHIKS 204
           AHPE++L+IG+DVDPSAL   R+ + + L  +         +   L+ +T AKNF++IK 
Sbjct: 130 AHPEMELYIGMDVDPSALEIGRSRIEAFLANRETNGDDEDASQGTLRAYTHAKNFKYIKH 189

Query: 205 VLGQIDENIL--RSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDI 262
           VLG +DENI    SGVD IL+DLGMSSMQVN  +RGFSVL DGPLDMRMDP+A+LKAEDI
Sbjct: 190 VLGSVDENIAVGTSGVDGILIDLGMSSMQVNRSDRGFSVLQDGPLDMRMDPKATLKAEDI 249

Query: 263 LNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQ 322
           LNSWPD EVGR+LR+YGEESNW  LQ +IV+AR  GGLHSTGELV LIQ  T    G RQ
Sbjct: 250 LNSWPDLEVGRILRDYGEESNWQSLQKRIVKARAMGGLHSTGELVKLIQR-TCTSSGGRQ 308

Query: 323 GWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLS 382
           GWIKTATRVFQALRIAVNDEL+TLE +LHACFDCLA  GRL VISFHSLEDRIVKQTFL 
Sbjct: 309 GWIKTATRVFQALRIAVNDELRTLEDALHACFDCLATDGRLAVISFHSLEDRIVKQTFLE 368

Query: 383 IIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCR 442
           +I  + ++ + +E++L +   D+ +E W +Q +QG NG ILTKRPI+PS EEE LN RCR
Sbjct: 369 LI--HEDEIDDDEDDLVSADIDSEDEPWFKQRVQGKNGTILTKRPISPSQEEEELNQRCR 426

Query: 443 SAKLRVIQK 451
           SAKLRVIQK
Sbjct: 427 SAKLRVIQK 435

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
TAIR|locus:2183815	434	AT5G10910 [Arabidopsis thalian	0.823	0.857	0.613	6.2e-117
UNIPROTKB|Q81WC3	310	rsmH "Ribosomal RNA small subu	0.548	0.8	0.431	8.7e-49
TIGR_CMR|BA_4057	310	BA_4057 "S-adenosyl-methyltran	0.548	0.8	0.431	8.7e-49
UNIPROTKB|P60396	311	rsmH "Ribosomal RNA small subu	0.548	0.797	0.446	5.7e-43
TIGR_CMR|GSU_3077	311	GSU_3077 "S-adenosyl-methyltra	0.548	0.797	0.446	5.7e-43
UNIPROTKB|Q604V0	301	rsmH "Ribosomal RNA small subu	0.568	0.853	0.425	7.5e-42
UNIPROTKB|Q3AAD7	311	rsmH "Ribosomal RNA small subu	0.544	0.790	0.410	4.2e-40
TIGR_CMR|CHY_2078	311	CHY_2078 "S-adenosyl-methyltra	0.544	0.790	0.410	4.2e-40
UNIPROTKB|A6NJ78	407	METTL15 "Probable methyltransf	0.699	0.776	0.351	1.1e-39
UNIPROTKB|P65429	344	rsmH "Ribosomal RNA small subu	0.522	0.686	0.425	2.3e-39

TAIR|locus:2183815 AT5G10910 [Arabidopsis thaliana (taxid:3702)]

 Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
 Identities = 240/391 (61%), Positives = 289/391 (73%)

Query:    70 KNKKVAKAKATSARVGVGMGLVKEKRRTRSNKDYDYEXXXXXXXXXXXPVMLGEVLDVFS 129
             + K++   KAT+  V     + KEKRRTRS++ Y+             PVMLGEVLD+FS
Sbjct:    55 RRKEIEVEKATAEAV-----VNKEKRRTRSSRGYEL-ADGDEVPSSHVPVMLGEVLDIFS 108

Query:   130 SSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPH 189
             S R + SFVDCTLGAAGHSS+II++H ELK  +G+DVDP A      H++SL+H    P 
Sbjct:   109 SVR-LRSFVDCTLGAAGHSSSIIQSHSELKNFVGMDVDPVARKLGHFHIDSLMH----PT 163

Query:   190 LKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDM 249
             LK     KNF++IKSV+      +L  GVD ILMDLGMSSMQVNNPERGFSVL +GPLDM
Sbjct:   164 LKASIVLKNFKYIKSVIADTQPELLDVGVDGILMDLGMSSMQVNNPERGFSVLQEGPLDM 223

Query:   250 RMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDL 309
             RMDPQA+L AEDI+NSWP++E+GRVLR+YGEESNW+LLQN+IV+ARL GGLHSTGELVDL
Sbjct:   224 RMDPQATLTAEDIVNSWPESELGRVLRDYGEESNWYLLQNRIVKARLNGGLHSTGELVDL 283

Query:   310 IQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFH 369
             I+  +P  RG RQGWIKTATRVFQ LRIAVNDELKTL++SL++ FD LAPGGRL VISFH
Sbjct:   284 IRGTSPASRGGRQGWIKTATRVFQGLRIAVNDELKTLQNSLYSSFDVLAPGGRLAVISFH 343

Query:   370 SLEDRIVKQTFLSIIDHNREDAEGNEEELRNIR--DDNIN------ETWIRQIIQGWNGK 421
             SLEDR+VKQTFL I+   RE+  G    ++  R  ++ +       E WI+Q +    G 
Sbjct:   344 SLEDRVVKQTFLDILGFQREEINGEGSSVKPERQIEERVEKELKEKEEWIKQTVIASKGV 403

Query:   422 ILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
             ILTKRPITPS EEERLN R RSAKLRVIQK+
Sbjct:   404 ILTKRPITPSEEEERLNRRARSAKLRVIQKL 434

GO:0005737 "cytoplasm" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA;ISS

UNIPROTKB|Q81WC3 rsmH "Ribosomal RNA small subunit methyltransferase H" [Bacillus anthracis (taxid:1392)]

 Score = 449 (163.1 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
 Identities = 113/262 (43%), Positives = 150/262 (57%)

Query:   119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL 178
             V+L E +D        T +VDCTLG  GHSS ++    E    I  D D  A+  A+   
Sbjct:     7 VLLKETVDGLDIKPDGT-YVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAKEKF 65

Query:   179 NSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERG 238
             +S  +G+    +K+     NFR++   L ++   I    VD IL DLG+SS Q++ PERG
Sbjct:    66 SS--YGEQFITVKS-----NFRYLSEKLQEL--GITE--VDGILFDLGVSSPQLDTPERG 114

Query:   239 FSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRG 298
             FS   D PLDMRMD  A L A D++NSW   ++ R+  +YGEE     +  KI   R   
Sbjct:   115 FSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENK 174

Query:   299 GLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLA 358
              + +TGELV+LI+   P    RR G    A RVFQA+RIAVNDELK  E +L +  + + 
Sbjct:   175 AIETTGELVELIKEGIPAP-ARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAIEMVK 232

Query:   359 PGGRLGVISFHSLEDRIVKQTF 380
             PGGR+ VI+FHSLEDRI K TF
Sbjct:   233 PGGRVSVITFHSLEDRICKTTF 254

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_4057 BA_4057 "S-adenosyl-methyltransferase MraW" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 449 (163.1 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
 Identities = 113/262 (43%), Positives = 150/262 (57%)

Query:   119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL 178
             V+L E +D        T +VDCTLG  GHSS ++    E    I  D D  A+  A+   
Sbjct:     7 VLLKETVDGLDIKPDGT-YVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAKEKF 65

Query:   179 NSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERG 238
             +S  +G+    +K+     NFR++   L ++   I    VD IL DLG+SS Q++ PERG
Sbjct:    66 SS--YGEQFITVKS-----NFRYLSEKLQEL--GITE--VDGILFDLGVSSPQLDTPERG 114

Query:   239 FSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRG 298
             FS   D PLDMRMD  A L A D++NSW   ++ R+  +YGEE     +  KI   R   
Sbjct:   115 FSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENK 174

Query:   299 GLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLA 358
              + +TGELV+LI+   P    RR G    A RVFQA+RIAVNDELK  E +L +  + + 
Sbjct:   175 AIETTGELVELIKEGIPAP-ARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAIEMVK 232

Query:   359 PGGRLGVISFHSLEDRIVKQTF 380
             PGGR+ VI+FHSLEDRI K TF
Sbjct:   233 PGGRVSVITFHSLEDRICKTTF 254

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

UNIPROTKB|P60396 rsmH "Ribosomal RNA small subunit methyltransferase H" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 118/264 (44%), Positives = 155/264 (58%)

Query:   118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAH 177
             PVM  EVL+ + S R    +VD TLG AGH+  I+ A     + IG D DP+AL  AR  
Sbjct:     7 PVMPAEVLE-YLSPRPGGVYVDGTLGGAGHARLILEATSPDGMLIGFDRDPAALEVARER 65

Query:   178 LNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPER 237
             L   L G+     +      NF  +  VL ++  +    GVD  L+D+G+SS Q++  ER
Sbjct:    66 L--ALFGE-----RFRPVPGNFSEMGRVLAELGVD----GVDGFLLDVGVSSHQLDTAER 114

Query:   238 GFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNW-HLLQNKIVQARL 296
             GFS L D PLDMRM+      A D++N   + E+ R+++EYGEE  W   + + IV+AR+
Sbjct:   115 GFSFLTDAPLDMRMNTLVPGTAADLVNDLNEHELARIIKEYGEE-RWARRIASFIVKARV 173

Query:   297 RGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDC 356
              G +  T +LVD+I+   P  RG  +  I  ATR FQALRIAVNDEL +LE  L +    
Sbjct:   174 DGPIERTLQLVDIIKGAIP--RGAWEERIHPATRTFQALRIAVNDELGSLERGLESALGL 231

Query:   357 LAPGGRLGVISFHSLEDRIVKQTF 380
             L PGGR  VISFHSLEDRIVK  F
Sbjct:   232 LRPGGRGVVISFHSLEDRIVKTMF 255

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_3077 GSU_3077 "S-adenosyl-methyltransferase MraW" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 118/264 (44%), Positives = 155/264 (58%)

Query:   118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAH 177
             PVM  EVL+ + S R    +VD TLG AGH+  I+ A     + IG D DP+AL  AR  
Sbjct:     7 PVMPAEVLE-YLSPRPGGVYVDGTLGGAGHARLILEATSPDGMLIGFDRDPAALEVARER 65

Query:   178 LNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPER 237
             L   L G+     +      NF  +  VL ++  +    GVD  L+D+G+SS Q++  ER
Sbjct:    66 L--ALFGE-----RFRPVPGNFSEMGRVLAELGVD----GVDGFLLDVGVSSHQLDTAER 114

Query:   238 GFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNW-HLLQNKIVQARL 296
             GFS L D PLDMRM+      A D++N   + E+ R+++EYGEE  W   + + IV+AR+
Sbjct:   115 GFSFLTDAPLDMRMNTLVPGTAADLVNDLNEHELARIIKEYGEE-RWARRIASFIVKARV 173

Query:   297 RGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDC 356
              G +  T +LVD+I+   P  RG  +  I  ATR FQALRIAVNDEL +LE  L +    
Sbjct:   174 DGPIERTLQLVDIIKGAIP--RGAWEERIHPATRTFQALRIAVNDELGSLERGLESALGL 231

Query:   357 LAPGGRLGVISFHSLEDRIVKQTF 380
             L PGGR  VISFHSLEDRIVK  F
Sbjct:   232 LRPGGRGVVISFHSLEDRIVKTMF 255

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

UNIPROTKB|Q604V0 rsmH "Ribosomal RNA small subunit methyltransferase H" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 408 (148.7 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
 Identities = 117/275 (42%), Positives = 154/275 (56%)

Query:   120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAII-RAHPELKLHIGVDVDPSALAKARAHL 178
             ML EVL++ +  R    +VDCT G  GHS AI+ R  PE +L + +D D  A+A A A  
Sbjct:     1 MLSEVLEMLAV-RPDGIYVDCTFGRGGHSRAILERLGPEGRL-LAIDRDLEAVAAAGA-- 56

Query:   179 NSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERG 238
              + L   A   ++   F+   R +    G          VD ILMDLG+SS Q++N  RG
Sbjct:    57 -TGLSADARFGIEHGRFSDVGRFV-GARGWTGR------VDGILMDLGVSSPQLDNARRG 108

Query:   239 FSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRG 298
             FS L  GPLDMRMDP     A + L    + E+ RVLR+YGEE     +   +V+ R R 
Sbjct:   109 FSFLRAGPLDMRMDPTQKTTAAEWLAEVSERELARVLRDYGEERFAGRIARAVVEERRRR 168

Query:   299 GLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLA 358
              + +T +LV LI++  P     +  +   ATR FQA+RIAVNDEL  L+  L+   + LA
Sbjct:   169 PIVTTTDLVRLIEAAIPF----KDKFKHPATRTFQAIRIAVNDELGQLQQGLNEAVEVLA 224

Query:   359 PGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEG 393
              GGRL VISFHSLEDRIVK+ F+      RE A G
Sbjct:   225 AGGRLVVISFHSLEDRIVKR-FMRDEARGREMAGG 258

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AAD7 rsmH "Ribosomal RNA small subunit methyltransferase H" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 108/263 (41%), Positives = 153/263 (58%)

Query:   118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAH 177
             PV+L E ++  +  +    +VD TLG  GHS  I++   + ++ +G+D D  AL  A   
Sbjct:     7 PVLLNETIEHLNL-KAGGVYVDATLGGGGHSEEILK-RADCRV-VGLDQDEDALNHAAKR 63

Query:   178 LNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPER 237
             L     G     +K+     NFR+I+ V+ ++  +     VD +LMDLG+SS Q++NP +
Sbjct:    64 LAPF--GDRFIPVKS-----NFRNIRKVVYRLGLD----AVDGVLMDLGVSSFQLDNPLK 112

Query:   238 GFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLR 297
             GFS   DGPLDMRMDPQ    A D++N++P+ E+ R+  EYGEE     +   IV+ R +
Sbjct:   113 GFSFQHDGPLDMRMDPQNPKTAADVVNTYPEKELIRIFYEYGEERYAPQIARAIVKRREK 172

Query:   298 GGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCL 357
                 ST EL + I    P  + RR+     A RVFQA+RI VNDEL +LE  L    + L
Sbjct:   173 KPFTSTLELAEEIIRAVPA-KARREK--HPAKRVFQAIRIEVNDELSSLEEGLVGAVEVL 229

Query:   358 APGGRLGVISFHSLEDRIVKQTF 380
              PGGR+ VI+FHSLEDR+VK  F
Sbjct:   230 KPGGRIVVITFHSLEDRLVKNFF 252

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_2078 CHY_2078 "S-adenosyl-methyltransferase MraW" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 108/263 (41%), Positives = 153/263 (58%)

Query:   118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAH 177
             PV+L E ++  +  +    +VD TLG  GHS  I++   + ++ +G+D D  AL  A   
Sbjct:     7 PVLLNETIEHLNL-KAGGVYVDATLGGGGHSEEILK-RADCRV-VGLDQDEDALNHAAKR 63

Query:   178 LNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPER 237
             L     G     +K+     NFR+I+ V+ ++  +     VD +LMDLG+SS Q++NP +
Sbjct:    64 LAPF--GDRFIPVKS-----NFRNIRKVVYRLGLD----AVDGVLMDLGVSSFQLDNPLK 112

Query:   238 GFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLR 297
             GFS   DGPLDMRMDPQ    A D++N++P+ E+ R+  EYGEE     +   IV+ R +
Sbjct:   113 GFSFQHDGPLDMRMDPQNPKTAADVVNTYPEKELIRIFYEYGEERYAPQIARAIVKRREK 172

Query:   298 GGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCL 357
                 ST EL + I    P  + RR+     A RVFQA+RI VNDEL +LE  L    + L
Sbjct:   173 KPFTSTLELAEEIIRAVPA-KARREK--HPAKRVFQAIRIEVNDELSSLEEGLVGAVEVL 229

Query:   358 APGGRLGVISFHSLEDRIVKQTF 380
              PGGR+ VI+FHSLEDR+VK  F
Sbjct:   230 KPGGRIVVITFHSLEDRLVKNFF 252

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

UNIPROTKB|A6NJ78 METTL15 "Probable methyltransferase-like protein 15" [Homo sapiens (taxid:9606)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 124/353 (35%), Positives = 187/353 (52%)

Query:   118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAH 177
             PVM+ EV+   S  +    F+D T G+ GH+ AI++   ++ L+  +D DP+A A A  H
Sbjct:    74 PVMVDEVVHCLSPQKG-QIFLDMTFGSGGHTKAILQKESDIVLY-ALDRDPTAYALAE-H 130

Query:   178 LNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGV-----DAILMDLGMSSMQV 232
             L+ L             + K  R +     Q +  ++++GV     D +LMDLG SSMQ+
Sbjct:   131 LSEL-------------YPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQL 177

Query:   233 NNPERGFSVLGDGPLDMRMD----PQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQ 288
             + PERGFS+  DGPLDMRMD    P     A D++N+     +  +LR YGEE +   + 
Sbjct:   178 DTPERGFSLRKDGPLDMRMDGGRYPDMPTAA-DVVNALDQQALASILRTYGEEKHAKKIA 236

Query:   289 NKIVQARLRGGLHSTGELVDLIQSVTP--GMRGRR---QGWIKTATRVFQALRIAVNDEL 343
             + IVQAR    +  T +L  ++    P   +  R+   Q     AT+ FQALRI VN+EL
Sbjct:   237 SAIVQARSIYPITRTQQLASIVAGAFPPSAIYTRKDLLQRSTHIATKTFQALRIFVNNEL 296

Query:   344 KTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIR- 402
               L + L      L PGGRL  +SFHSLEDRIVK+  L I    R +    ++ ++  + 
Sbjct:   297 NELYTGLKTAQKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQL 356

Query:   403 --D-DNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
               D +N  E  +R+    W  +++ K+ ++P  ++ + N R RSAKLR   K+
Sbjct:   357 GSDHENTEEVSMRRAPLMW--ELIHKKVLSPQDQDVQDNPRGRSAKLRAAIKL 407

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|P65429 rsmH "Ribosomal RNA small subunit methyltransferase H" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 105/247 (42%), Positives = 143/247 (57%)

Query:   138 VDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK 197
             +D T+GA GH+   +   P L+L IG+D DP+AL  AR+ L       A      HT   
Sbjct:    42 LDATIGAGGHAERFLEGLPGLRL-IGLDRDPTALDVARSRLVRF----ADRLTLVHT--- 93

Query:   198 NFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASL 257
              +  + + L +     + S VD IL DLG+SSMQ++  ERGF+   D PLDMRMDP   L
Sbjct:    94 RYDCLGAALAESGYAAVGS-VDGILFDLGVSSMQLDRAERGFAYATDAPLDMRMDPTTPL 152

Query:   258 KAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGM 317
              A DI+N++ +A +  +LR YGEE     +   IV+ R +    ST ELV L+    P  
Sbjct:   153 TAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAKTPFTSTAELVALLYQAIPAP 212

Query:   318 RGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVK 377
               RR G    A R FQALRIAVNDEL++L +++ A  D LA GGR+ V+++ SLEDRIVK
Sbjct:   213 -ARRVGG-HPAKRTFQALRIAVNDELESLRTAVPAALDALAIGGRIAVLAYQSLEDRIVK 270

Query:   378 QTFLSII 384
             + F   +
Sbjct:   271 RVFAEAV 277

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	452
PRK00050	296	PRK00050, PRK00050, 16S rRNA m(4)C1402 methyltrans	1e-114
COG0275	314	COG0275, COG0275, Predicted S-adenosylmethionine-d	1e-109
pfam01795	310	pfam01795, Methyltransf_5, MraW methylase family	1e-101
TIGR00006	307	TIGR00006, TIGR00006, 16S rRNA (cytosine(1402)-N(4	2e-82

>gnl|CDD|234597 PRK00050, PRK00050, 16S rRNA m(4)C1402 methyltranserfase; Provisional

 Score =  337 bits (868), Expect = e-114
 Identities = 144/346 (41%), Positives = 190/346 (54%), Gaps = 62/346 (17%)

Query: 116 HIPVMLGEVLDVFSSSRTITS---FVDCTLGAAGHSSAIIRAHPE-LKLHIGVDVDPSAL 171
           HIPV+L EV+D  +    I     +VD T G  GHS AI+       +L I +D DP A+
Sbjct: 3   HIPVLLDEVVDALA----IKPDGIYVDGTFGGGGHSRAILERLGPKGRL-IAIDRDPDAI 57

Query: 172 AKARAHLN-----SLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLG 226
           A A+  L      +L+HG             NF ++K VL    E +    VD IL+DLG
Sbjct: 58  AAAKDRLKPFGRFTLVHG-------------NFSNLKEVL---AEGL--GKVDGILLDLG 99

Query: 227 MSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHL 286
           +SS Q+++ ERGFS   DGPLDMRMD    L A +++N++ + E+ R+ +EYGEE     
Sbjct: 100 VSSPQLDDAERGFSFRKDGPLDMRMDQSQGLTAAEVVNTYSEEELARIFKEYGEERFARR 159

Query: 287 LQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTL 346
           +   IV+AR +  + +TGEL ++I+S  P  R      I  ATR FQALRI VNDEL+ L
Sbjct: 160 IARAIVEARPKKPITTTGELAEIIKSAVPPRRKG----IHPATRTFQALRIEVNDELEEL 215

Query: 347 ESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNI 406
           E +L A  D L PGGRL VISFHSLEDRIVK+ F       RE ++G             
Sbjct: 216 ERALEAALDLLKPGGRLAVISFHSLEDRIVKRFF-------RELSKGCCG---------- 258

Query: 407 NETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
                         K+LTK+PI PS EE   N R RSAKLRV +++
Sbjct: 259 ---------NKPKLKLLTKKPIKPSEEEIAANPRARSAKLRVAERL 295

Length = 296

>gnl|CDD|223352 COG0275, COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

 Score =  325 bits (835), Expect = e-109
 Identities = 138/346 (39%), Positives = 191/346 (55%), Gaps = 43/346 (12%)

Query: 113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALA 172
              HIPV+L EV+++ +       ++D TLGA GHS AI+   P+L   IG+D DP A+A
Sbjct: 4   SFRHIPVLLNEVVELLAPKPDGI-YIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIA 62

Query: 173 KARAHLN------SLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLG 226
            A+  L       +L+HG             NF ++   L ++        VD IL+DLG
Sbjct: 63  IAKERLKEFDGRVTLVHG-------------NFANLAEALKELGI----GKVDGILLDLG 105

Query: 227 MSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHL 286
           +SS Q+++ ERGFS   DGPLDMRMD    L A +++N++ + ++ R+ +EYGEE     
Sbjct: 106 VSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDLARIFKEYGEERFAKR 165

Query: 287 LQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTL 346
           +   IV+ R +  + +T EL ++I+S  P    R++  I  ATR FQA+RI VNDEL+ L
Sbjct: 166 IARAIVERRKKKPIETTKELAEIIKSAIPAKEKRKK--IHPATRTFQAIRIYVNDELEEL 223

Query: 347 ESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNI 406
           E +L A  D L PGGRL VISFHSLEDRIVK  F            G  + L        
Sbjct: 224 EEALEAALDLLKPGGRLAVISFHSLEDRIVKNFF------KELSKPGVPKGLP------- 270

Query: 407 NETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
               + +       K++TK+PI PS EE   N R RSAKLRV +KI
Sbjct: 271 ----VTEEGPALKFKLITKKPIMPSEEEIEANPRARSAKLRVAEKI 312

Length = 314

>gnl|CDD|216706 pfam01795, Methyltransf_5, MraW methylase family

 Score =  303 bits (779), Expect = e-101
 Identities = 138/343 (40%), Positives = 191/343 (55%), Gaps = 36/343 (10%)

Query: 113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALA 172
           +  HI V+L EV+++ +       ++DCTLG  GHS AI+   PE    IG+D DP A+A
Sbjct: 1   EFHHISVLLQEVVELLNIKPDGI-YIDCTLGGGGHSEAILEQLPEEGRLIGIDRDPQAIA 59

Query: 173 KARAHLNSLLHGQAHPHLKTHTFAK-NFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQ 231
            A+  L         P     T    NF ++ + L +    + +  VD IL DLG+SS Q
Sbjct: 60  NAKERLK--------PFKGRVTLIHSNFANLFAYLKE--LGVGK--VDGILFDLGVSSPQ 107

Query: 232 VNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKI 291
           ++  ERGFS   D PLDMRMD  A L A ++LN++ + ++ R+ ++YGEE     +   I
Sbjct: 108 LDGAERGFSFKHDAPLDMRMDQSAGLTAAEVLNTYSEEDLARIFKKYGEERFSKRIARAI 167

Query: 292 VQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLH 351
           V+ R +  + +T EL ++I+   P    +R+  I  ATR FQA+RI VNDEL++L+ +L 
Sbjct: 168 VERRKKKPIETTKELAEIIKKAVPAKA-KRKK-IHPATRTFQAIRIYVNDELESLKEALE 225

Query: 352 ACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNE--EELRNIRDDNINET 409
              D LAPGGRL VISFHSLEDRIVK  F       RE ++G +    L  I +      
Sbjct: 226 QAPDLLAPGGRLSVISFHSLEDRIVKNFF-------REYSKGCQVPAGLPVILEGLEPL- 277

Query: 410 WIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
                      KI+TK+PI PS EE   N R RSAKLRV +KI
Sbjct: 278 ----------LKIITKKPILPSEEEIEENPRSRSAKLRVAEKI 310

Members of this family are probably SAM dependent methyltransferases based on Escherichia coli rsmH. This family appears to be related to pfam01596. Length = 310

>gnl|CDD|232778 TIGR00006, TIGR00006, 16S rRNA (cytosine(1402)-N(4))-methyltransferase

 Score =  255 bits (654), Expect = 2e-82
 Identities = 135/342 (39%), Positives = 184/342 (53%), Gaps = 43/342 (12%)

Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
           H  V+L EV++  +  +    ++D TLG  GHS AI+    E +L IG+D DP A+A A+
Sbjct: 4   HQSVLLDEVVEGLNI-KPDGIYIDGTLGRGGHSKAILSQLGEGRL-IGIDRDPQAIAFAK 61

Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGV---DAILMDLGMSSMQV 232
             L                    F  I        E +    V   D IL+DLG+SS Q+
Sbjct: 62  EIL----------------SDLRFVIIHDNFANFFEYLKELLVTKIDGILVDLGVSSPQL 105

Query: 233 NNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIV 292
           ++PERGFS + DGPLDMRMD    L A +ILN++ + ++  +L++YGEE     +   IV
Sbjct: 106 DDPERGFSFMHDGPLDMRMDQSQKLSAAEILNTYSEEDLEWILKKYGEERFSKRIARAIV 165

Query: 293 QARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHA 352
           + R +  + +T EL ++I    PG    +   I  ATRVFQA+RI VNDEL+ LE +L  
Sbjct: 166 ERRKKKPIQTTKELAEVISKAVPGF--SKYKSIHPATRVFQAIRIYVNDELEELEEALQF 223

Query: 353 CFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNE--EELRNIRDDNINETW 410
             + LAPGGRL +ISFHSLEDRIVK  F       RE ++G +    L    +       
Sbjct: 224 APNLLAPGGRLSIISFHSLEDRIVKNFF-------RELSKGPQVPPGLPVKEEQLYA--- 273

Query: 411 IRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
                    GK +TK+PITPS EE + N R RSAKLRV +K 
Sbjct: 274 --------LGKRITKKPITPSEEEIKENPRSRSAKLRVAEKK 307

This model describes RsmH, a 16S rRNA methyltransferase. Previously, this gene was designated MraW, known to be essential in E. coli and widely conserved in bacteria [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	452
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	100.0
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	100.0
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	100.0
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	100.0
KOG2782	303	consensus Putative SAM dependent methyltransferase	100.0
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.82
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.53
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.4
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.03
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.99
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.96
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.93
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.92
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.86
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.85
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.84
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	97.84
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.82
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.8
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.79
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.74
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	97.73
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.73
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.68
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.67
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.66
PRK14968	188	putative methyltransferase; Provisional	97.59
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	97.49
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.48
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.46
PRK07402	196	precorrin-6B methylase; Provisional	97.45
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.43
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.4
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.37
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.37
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.35
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.32
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.24
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.22
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.2
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.18
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	97.11
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.1
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	97.09
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	97.09
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.07
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.06
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.04
PLN02233	261	ubiquinone biosynthesis methyltransferase	97.03
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.0
PRK14967	223	putative methyltransferase; Provisional	96.97
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	96.97
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	96.96
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	96.95
PRK08317	241	hypothetical protein; Provisional	96.92
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	96.91
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	96.91
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.89
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	96.86
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	96.84
KOG2730	263	consensus Methylase [General function prediction o	96.82
TIGR00740	239	methyltransferase, putative. A simple BLAST search	96.75
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	96.71
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	96.71
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	96.71
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	96.69
PLN02244	340	tocopherol O-methyltransferase	96.59
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.57
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	96.56
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.51
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	96.51
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	96.49
PTZ00146	293	fibrillarin; Provisional	96.45
PRK11524	284	putative methyltransferase; Provisional	96.45
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.44
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	96.44
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	96.42
PLN02476	278	O-methyltransferase	96.41
COG2265	432	TrmA SAM-dependent methyltransferases related to t	96.36
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	96.36
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	96.35
PRK04266	226	fibrillarin; Provisional	96.35
PRK10742	250	putative methyltransferase; Provisional	96.34
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	96.34
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	96.27
COG4122	219	Predicted O-methyltransferase [General function pr	96.25
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	96.24
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	96.24
COG4123	248	Predicted O-methyltransferase [General function pr	96.2
TIGR03438	301	probable methyltransferase. This model represents	96.13
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	96.09
PRK11207	197	tellurite resistance protein TehB; Provisional	96.04
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	96.02
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	95.99
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	95.97
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	95.94
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	95.94
PRK04457	262	spermidine synthase; Provisional	95.85
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	95.81
TIGR00438	188	rrmJ cell division protein FtsJ.	95.77
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	95.76
PLN03075	296	nicotianamine synthase; Provisional	95.71
PLN02336	475	phosphoethanolamine N-methyltransferase	95.67
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	95.66
PLN02589	247	caffeoyl-CoA O-methyltransferase	95.65
PRK06922	677	hypothetical protein; Provisional	95.63
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	95.6
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	95.6
PRK05785	226	hypothetical protein; Provisional	95.58
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	95.55
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.5
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	95.47
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	95.44
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	95.39
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	95.38
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	95.31
PRK06202	232	hypothetical protein; Provisional	95.22
PHA03411	279	putative methyltransferase; Provisional	95.16
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	95.15
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	95.12
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	95.12
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	95.1
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	95.05
COG2890	280	HemK Methylase of polypeptide chain release factor	95.03
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	95.02
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	94.94
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	94.9
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	94.78
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	94.76
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	94.74
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	94.57
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	94.56
PRK00811	283	spermidine synthase; Provisional	94.28
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	94.09
PRK12335	287	tellurite resistance protein TehB; Provisional	94.08
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	94.07
PRK13699	227	putative methylase; Provisional	94.05
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	93.98
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	93.98
PLN02490	340	MPBQ/MSBQ methyltransferase	93.8
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	93.77
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	93.71
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	93.69
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	93.65
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	93.57
PRK10258	251	biotin biosynthesis protein BioC; Provisional	93.54
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	93.5
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	93.41
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	93.2
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	93.19
PHA03412	241	putative methyltransferase; Provisional	93.07
TIGR00452	314	methyltransferase, putative. Known examples to dat	92.99
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	92.92
PLN02585	315	magnesium protoporphyrin IX methyltransferase	92.85
PRK03612	521	spermidine synthase; Provisional	92.69
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	92.69
PLN02366	308	spermidine synthase	92.56
COG2520	341	Predicted methyltransferase [General function pred	92.46
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	92.06
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	92.02
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	91.98
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	91.91
PLN02336	475	phosphoethanolamine N-methyltransferase	91.85
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	91.7
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	91.57
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	91.44
PRK01581	374	speE spermidine synthase; Validated	91.12
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	91.08
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	90.78
COG0742	187	N6-adenine-specific methylase [DNA replication, re	90.75
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	90.17
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	90.17
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	90.05
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	89.63
PRK04148	134	hypothetical protein; Provisional	89.62
COG1041	347	Predicted DNA modification methylase [DNA replicat	89.03
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	88.97
PF13679	141	Methyltransf_32: Methyltransferase domain	88.46
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	88.33
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	87.99
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	87.76
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	87.4
KOG2360	413	consensus Proliferation-associated nucleolar prote	87.35
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	86.58
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	86.09
KOG2904	328	consensus Predicted methyltransferase [General fun	85.99
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	85.62
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	85.36
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	85.31
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	84.83
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	84.49
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	83.85
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	83.34
PLN02823	336	spermine synthase	83.29
PF12836	65	HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE	82.88
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	81.11
PLN02672	1082	methionine S-methyltransferase	80.98
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	80.53
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	80.16
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	80.13
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	80.11

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.2e-117  Score=879.51  Aligned_cols=310  Identities=43%  Similarity=0.667  Sum_probs=285.6

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      ..+.|+|||++|+++.|. ++|+++|||||||+||||.+||+++++.++|||+|+||+||+.|+++|..|..       |
T Consensus         3 ~~~~HipVLl~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~-------r   74 (314)
T COG0275           3 NSFRHIPVLLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDG-------R   74 (314)
T ss_pred             CCCCccchHHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCC-------c
Confidence            456799999999999998 57999999999999999999999999999999999999999999999999853       8


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCcccCCCCCCcccCCCCCCCCHHHHHhcCChHHH
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEV  271 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~eL  271 (452)
                      ++++|+||+++..++.+.+    ..+||||||||||||||||+++|||||++|||||||||+++++||+||||+|++++|
T Consensus        75 ~~~v~~~F~~l~~~l~~~~----i~~vDGiL~DLGVSS~QLD~~eRGFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L  150 (314)
T COG0275          75 VTLVHGNFANLAEALKELG----IGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDL  150 (314)
T ss_pred             EEEEeCcHHHHHHHHHhcC----CCceeEEEEeccCCccccCCCcCCcccCCCCCcccCcCCCCCCCHHHHHhcCCHHHH
Confidence            9999999999999998875    468999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCCCcCCCCCccchhHHHHHHHHHHHHhhHHHHHHHHH
Q 012954          272 GRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLH  351 (452)
Q Consensus       272 ~~Ifr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~~~~~~~~~~hpATR~FQALRI~VN~EL~~L~~~L~  351 (452)
                      ++||++||||++|++||++||++|+++||+||.||+++|..++|...  +.+++||||||||||||+|||||++|+++|+
T Consensus       151 ~~I~~~yGEEr~arrIA~aIv~~R~~~pi~tT~eLaeiI~~~~p~~~--~~k~~hPAtr~FQAiRI~VNdEL~~L~~~L~  228 (314)
T COG0275         151 ARIFKEYGEERFAKRIARAIVERRKKKPIETTKELAEIIKSAIPAKE--KRKKIHPATRTFQAIRIYVNDELEELEEALE  228 (314)
T ss_pred             HHHHHHhccHhhHHHHHHHHHHHhccCCCccHHHHHHHHHHhCCchh--cccCCCcchhhhhhheeeehhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999752  3345899999999999999999999999999


Q ss_pred             HHHHhhcCCCeEEEEeecchhHHHHHHHHHhhhccCCCccCCchhhhhcccccCcchhHHHHHhhCCcceeecCCCCCCC
Q 012954          352 ACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPS  431 (452)
Q Consensus       352 ~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltkKpi~Ps  431 (452)
                      +|+++|+|||||+|||||||||||||+||++++. +.     +|..+|++.+.  ..+         .++++|||||.||
T Consensus       229 ~a~~~L~~gGRl~VIsFHSLEDRiVK~ff~~~s~-~~-----~p~~lP~~~~~--~~~---------~~~~itkK~i~ps  291 (314)
T COG0275         229 AALDLLKPGGRLAVISFHSLEDRIVKNFFKELSK-PG-----VPKGLPVTEEG--PAL---------KFKLITKKPIMPS  291 (314)
T ss_pred             HHHHhhCCCcEEEEEEecchHHHHHHHHHHHhcc-cC-----CCCCCCccccc--ccc---------hhhhccCCCcCCC
Confidence            9999999999999999999999999999999876 21     35556654332  111         1578999999999


Q ss_pred             HHHHHhCcCccccccceeEeC
Q 012954          432 AEEERLNCRCRSAKLRVIQKI  452 (452)
Q Consensus       432 ~eEi~~NpRSRSAKLRv~eK~  452 (452)
                      ++|++.|||||||||||+||+
T Consensus       292 ~~Ei~~NpRsRSAkLRv~ek~  312 (314)
T COG0275         292 EEEIEANPRARSAKLRVAEKI  312 (314)
T ss_pred             HHHHHhCcchhhhHHHhhhhh
Confidence            999999999999999999985

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=100.00  E-value=7.5e-116  Score=875.71  Aligned_cols=308  Identities=48%  Similarity=0.701  Sum_probs=242.2

Q ss_pred             CCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954          114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       114 ~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      +.|+|||++||+++|. ++++++|||||||+||||.+||+++++ ++|||||+||+|++.|+++|+.|.       .|+.
T Consensus         2 ~~H~PVll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~-------~r~~   72 (310)
T PF01795_consen    2 FYHIPVLLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD-------DRFI   72 (310)
T ss_dssp             SS---TTHHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC-------TTEE
T ss_pred             CceecccHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc-------ceEE
Confidence            6799999999999998 579999999999999999999999999 789999999999999999998873       3899


Q ss_pred             EEccCcchHHHHHhhh-cccccccCccEEEEccCCCccCCCCCCCCcccCCCCCCcccCCCCCCCCHHHHHhcCChHHHH
Q 012954          194 TFAKNFRHIKSVLGQI-DENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVG  272 (452)
Q Consensus       194 li~~nF~~i~~~L~~~-~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~eL~  272 (452)
                      ++++||+++.+++.+. +    ...||||||||||||||||+++|||||++|||||||||+++++||+||||+||+++|+
T Consensus        73 ~~~~~F~~l~~~l~~~~~----~~~~dgiL~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tAa~ilN~~se~~L~  148 (310)
T PF01795_consen   73 FIHGNFSNLDEYLKELNG----INKVDGILFDLGVSSMQLDDPERGFSFRSDGPLDMRMDPSQGLTAADILNTYSEEELA  148 (310)
T ss_dssp             EEES-GGGHHHHHHHTTT----TS-EEEEEEE-S--HHHHHTGGGSSSSSS--BS---SSTTSS--HHHHHHHS-HHHHH
T ss_pred             EEeccHHHHHHHHHHccC----CCccCEEEEccccCHHHhCCCCCCCCCCCCCCCcccccccccccHHHHHHhcCHHHHH
Confidence            9999999999999886 3    3589999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCCCcCCCCCccchhHHHHHHHHHHHHhhHHHHHHHHHH
Q 012954          273 RVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHA  352 (452)
Q Consensus       273 ~Ifr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~~~~~~~~~~hpATR~FQALRI~VN~EL~~L~~~L~~  352 (452)
                      +||++||||++|++||++||++|+++||+||.||+++|.+++|..  .+++++||||||||||||+||+||++|+.+|++
T Consensus       149 ~I~~~yGee~~a~~IA~~Iv~~R~~~pi~tT~~L~~iI~~~~~~~--~~~~~~hpatr~FQALRI~VN~EL~~L~~~L~~  226 (310)
T PF01795_consen  149 RIFREYGEEKFARRIARAIVEARKKKPITTTKELAEIIEKAVPKK--RRRRKIHPATRVFQALRIAVNDELEELERGLEA  226 (310)
T ss_dssp             HHHHHHH--TTHHHHHHHHHHHHHHSS--BHHHHHHHHHHHS-HH--HCC-SS-TTHHHHHHHHHHHCTHHHHHHHHHHH
T ss_pred             HHHHhcCchhHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCcc--cccccCCHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999964  234468999999999999999999999999999


Q ss_pred             HHHhhcCCCeEEEEeecchhHHHHHHHHHhhhccCCCccCCchhhhhcccccCcchhHHHHHhhCCcceeecCCCCCCCH
Q 012954          353 CFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSA  432 (452)
Q Consensus       353 a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltkKpi~Ps~  432 (452)
                      ++++|+|||||+|||||||||||||++|+++...|.     +|..++++.+..           .+.++++|||||+||+
T Consensus       227 a~~~L~~gGrl~VISFHSLEDRiVK~~f~~~~~~~~-----~p~~lp~~~~~~-----------~~~~~~i~kk~i~ps~  290 (310)
T PF01795_consen  227 APDLLKPGGRLVVISFHSLEDRIVKQFFRELAKSCK-----CPPGLPVCECGK-----------HPKFKLITKKPITPSE  290 (310)
T ss_dssp             HHHHEEEEEEEEEEESSHHHHHHHHHHHHCCSSC----------------------------------EESESS-B---H
T ss_pred             HHHHhcCCcEEEEEEecchhhHHHHHHHHHhcccCC-----Cccccccccccc-----------ccceEEccCCccCCCh
Confidence            999999999999999999999999999999987654     345555543321           2236899999999999


Q ss_pred             HHHHhCcCccccccceeEeC
Q 012954          433 EEERLNCRCRSAKLRVIQKI  452 (452)
Q Consensus       433 eEi~~NpRSRSAKLRv~eK~  452 (452)
                      +||+.|||||||||||+||+
T Consensus       291 ~Ei~~NpRsRSAkLRv~ek~  310 (310)
T PF01795_consen  291 EEIEENPRSRSAKLRVAEKI  310 (310)
T ss_dssp             HHHHH-GGGTT-EEEEEEE-
T ss_pred             hhhhcCCchHhhhhheEEeC
Confidence            99999999999999999996

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=100.00  E-value=5.2e-114  Score=861.87  Aligned_cols=305  Identities=43%  Similarity=0.628  Sum_probs=278.9

Q ss_pred             CCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceE
Q 012954          113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKT  192 (452)
Q Consensus       113 ~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~  192 (452)
                      ++.|+|||++|+|++|. ++++++|||||||+||||.+||+++++ ++|||||+|++|++.|+++|+.|.       .|+
T Consensus         1 ~~~H~pVll~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-------~R~   71 (305)
T TIGR00006         1 NFFHQSVLLDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-------GRV   71 (305)
T ss_pred             CCCCcchhHHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-------CcE
Confidence            47899999999999998 579999999999999999999999987 889999999999999999998873       389


Q ss_pred             EEEccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCcccCCCCCCcccCCCCCCCCHHHHHhcCChHHHH
Q 012954          193 HTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVG  272 (452)
Q Consensus       193 ~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~eL~  272 (452)
                      +++|+||+++.+++.+.+    ...||||||||||||||||+++|||||+.|||||||||+++++||+||||+||++||+
T Consensus        72 ~~i~~nF~~l~~~l~~~~----~~~vDgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tA~~~ln~~~e~~L~  147 (305)
T TIGR00006        72 VLIHDNFANFFEHLDELL----VTKIDGILVDLGVSSPQLDDPERGFSFKHDGPLDMRMDQSQKLSAAEILNTYSEEDLE  147 (305)
T ss_pred             EEEeCCHHHHHHHHHhcC----CCcccEEEEeccCCHhhcCCCCCCCccCCCCCcccccCCCCCCCHHHHHhhCCHHHHH
Confidence            999999999999998765    3479999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCCCcCCCCCccchhHHHHHHHHHHHHhhHHHHHHHHHH
Q 012954          273 RVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHA  352 (452)
Q Consensus       273 ~Ifr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~~~~~~~~~~hpATR~FQALRI~VN~EL~~L~~~L~~  352 (452)
                      +||++||||++|++||++||++|+.+||+||.||+++|++++|..  .+++++||||||||||||+|||||++|+++|+.
T Consensus       148 ~i~~~yGEe~~a~~IA~~Iv~~R~~~~i~tt~~L~~ii~~~~p~~--~~~~~~hpatr~FQALRI~VN~EL~~L~~~L~~  225 (305)
T TIGR00006       148 RILKKYGEEKFSKRIARAIVERRKKKPIQTTKELAELISKAVPGF--SKHKSIHPATRVFQAIRIYVNDELEELEEALQF  225 (305)
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCcc--ccccCCCcHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999953  223457999999999999999999999999999


Q ss_pred             HHHhhcCCCeEEEEeecchhHHHHHHHHHhhhccCCCccCCchhhhhcccccCcchhHHHHHhhCCcceeecCCCCCCCH
Q 012954          353 CFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSA  432 (452)
Q Consensus       353 a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltkKpi~Ps~  432 (452)
                      ++++|+|||||||||||||||||||++|+++...+      +|..++.+.+              ..++++|||||+||+
T Consensus       226 ~~~~L~~gGrl~VISfHSLEDRiVK~~f~~~~~~~------~~~~~~~~~~--------------~~~~~lt~k~i~ps~  285 (305)
T TIGR00006       226 APNLLAPGGRLSIISFHSLEDRIVKNFFRELSKFP------QPPGLPVKET--------------PLYALITKKPITPSE  285 (305)
T ss_pred             HHHHhcCCCEEEEEecCcHHHHHHHHHHHHhcccC------CCCCCCcccc--------------cceeEccCCCcCCCH
Confidence            99999999999999999999999999999886532      1333443321              125789999999999


Q ss_pred             HHHHhCcCccccccceeEeC
Q 012954          433 EEERLNCRCRSAKLRVIQKI  452 (452)
Q Consensus       433 eEi~~NpRSRSAKLRv~eK~  452 (452)
                      +||+.|||||||||||+||+
T Consensus       286 ~Ei~~NpRsRSAkLRv~~k~  305 (305)
T TIGR00006       286 EEIKENPRSRSAKLRVAEKK  305 (305)
T ss_pred             HHHHhCccHHhhhheeEEeC
Confidence            99999999999999999985

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=100.00  E-value=8.6e-108  Score=814.81  Aligned_cols=295  Identities=46%  Similarity=0.676  Sum_probs=271.1

Q ss_pred             CCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954          114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       114 ~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      +.|+|||++|||+.|. ++|+++|||||+|+||||.+||+.+++.++|||||+|++|++.|+++|++ .       .|++
T Consensus         1 ~~H~pVll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~-------~ri~   71 (296)
T PRK00050          1 FKHIPVLLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F-------GRFT   71 (296)
T ss_pred             CCCccccHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C-------CcEE
Confidence            3699999999999997 57999999999999999999999998678999999999999999998865 2       2899


Q ss_pred             EEccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCcccCCCCCCcccCCCCCCCCHHHHHhcCChHHHHH
Q 012954          194 TFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGR  273 (452)
Q Consensus       194 li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~eL~~  273 (452)
                      +++++|+++..++.+ +    ...||||+|||||||||||+++|||||+.|||||||||++.++||+||||+||+++|++
T Consensus        72 ~i~~~f~~l~~~l~~-~----~~~vDgIl~DLGvSs~Qld~~~RGFSf~~~gpLDMRmd~~~~~sA~~~ln~~~~~~L~~  146 (296)
T PRK00050         72 LVHGNFSNLKEVLAE-G----LGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQSQGLTAAEVVNTYSEEELAR  146 (296)
T ss_pred             EEeCCHHHHHHHHHc-C----CCccCEEEECCCccccccCCCcCCcccCCCCCCcCCcCCCCCCCHHHHHhhCCHHHHHH
Confidence            999999999888865 3    23699999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCCCcCCCCCccchhHHHHHHHHHHHHhhHHHHHHHHHHH
Q 012954          274 VLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHAC  353 (452)
Q Consensus       274 Ifr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~~~~~~~~~~hpATR~FQALRI~VN~EL~~L~~~L~~a  353 (452)
                      ||++||||++|++||++||++|+++||+||.||+++|..++|.    +++++||||||||||||+|||||++|+++|+++
T Consensus       147 i~~~yGee~~a~~iA~~Iv~~R~~~~~~tt~~L~~~i~~~~~~----~~~~~hpatr~FQAlRI~VN~El~~L~~~L~~~  222 (296)
T PRK00050        147 IFKEYGEERFARRIARAIVEARPKKPITTTGELAEIIKSAVPP----RRKGIHPATRTFQALRIEVNDELEELERALEAA  222 (296)
T ss_pred             HHHHhcCcchHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcCc----cCCCCCchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999992    134579999999999999999999999999999


Q ss_pred             HHhhcCCCeEEEEeecchhHHHHHHHHHhhhccCCCccCCchhhhhcccccCcchhHHHHHhhCCcceeecCCCCCCCHH
Q 012954          354 FDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSAE  433 (452)
Q Consensus       354 ~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltkKpi~Ps~e  433 (452)
                      +++|+|||||+|||||||||||||+||+++...+  +               .         ..+.++++|||||+||++
T Consensus       223 ~~~L~~gGrl~visfHSlEDriVK~~f~~~~~~~--~---------------~---------~~~~~~~~~~k~i~ps~~  276 (296)
T PRK00050        223 LDLLKPGGRLAVISFHSLEDRIVKRFFRELSKGC--C---------------G---------NKPKLKLLTKKPIKPSEE  276 (296)
T ss_pred             HHHhcCCCEEEEEecCcHHHHHHHHHHHHhcccc--c---------------c---------cCCceEEcCCCCcCCCHH
Confidence            9999999999999999999999999999875431  0               0         112357899999999999


Q ss_pred             HHHhCcCccccccceeEeC
Q 012954          434 EERLNCRCRSAKLRVIQKI  452 (452)
Q Consensus       434 Ei~~NpRSRSAKLRv~eK~  452 (452)
                      ||+.|||||||||||++|+
T Consensus       277 Ei~~NpRsRSAkLR~~~k~  295 (296)
T PRK00050        277 EIAANPRARSAKLRVAERL  295 (296)
T ss_pred             HHHhCcchHhhhheEEEec
Confidence            9999999999999999985

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=100.00  E-value=8.7e-81  Score=593.49  Aligned_cols=283  Identities=63%  Similarity=0.965  Sum_probs=258.1

Q ss_pred             cchhccccccCCccCCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCC
Q 012954           88 MGLVKEKRRTRSNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVD  167 (452)
Q Consensus        88 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD  167 (452)
                      +...++|+|||   -|+-..+ +.-...|+|||++||+++|++ .++++|+|||||+||||..||++.++. ++|++|+|
T Consensus         3 ~~~n~~k~r~~---~~~~a~~-d~~~~~HVPVm~devl~~lsp-v~g~sf~DmTfGagGHt~~ilqk~se~-k~yalDrD   76 (303)
T KOG2782|consen    3 AVVNKEKRRTR---GYELADG-DEVPSSHVPVMLDEVLDILSP-VRGRSFVDMTFGAGGHTSSILQKHSEL-KNYALDRD   76 (303)
T ss_pred             cccChHhhhcc---ceeeccc-ccccccCCceehhhHHHHcCC-CCCceEEEEeccCCcchHHHHHhCcHh-hhhhhccC
Confidence            44568899998   3443333 445667999999999999984 699999999999999999999999996 59999999


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCcccCCCCCC
Q 012954          168 PSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPL  247 (452)
Q Consensus       168 ~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPL  247 (452)
                      |.|.+.|....++.-.      .++..+.+||+++++++++.+  +...+|||||||||+||||+|+|+||||..+||||
T Consensus        77 P~A~~La~~~s~el~~------~~l~a~Lg~Fs~~~~l~~~~g--l~~~~vDGiLmDlGcSSMQ~d~peRGFSv~~dGpL  148 (303)
T KOG2782|consen   77 PVARKLAHFHSDELMH------PTLKAVLGNFSYIKSLIADTG--LLDVGVDGILMDLGCSSMQVDNPERGFSVLQDGPL  148 (303)
T ss_pred             hHHHHHHHHhhHhhcc------hhHHHHHhhhHHHHHHHHHhC--CCcCCcceEEeecCccccccCCccccceeeccCCc
Confidence            9999999877644322      255568999999999999876  45678999999999999999999999999999999


Q ss_pred             cccCCCCCCCCHHHHHhcCChHHHHHHHHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCCCcCCCCCccch
Q 012954          248 DMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKT  327 (452)
Q Consensus       248 DMRMD~~~~~tAadiLN~~se~eL~~Ifr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~~~~~~~~~~hp  327 (452)
                      |||||+....+|.+++|+|+|.||.+|+|.||||++|++||+.||++|..+.|+||.||+++|+..-|.++..+++|+|.
T Consensus       149 DMRMDgg~s~g~~~~~~~~~e~~l~rvlr~ygee~~~~~l~~~iv~ar~~~~l~st~~l~dli~~~~~~~r~~~~~~~~t  228 (303)
T KOG2782|consen  149 DMRMDGGASLGAEDIVNSWPESELGRVLRDYGEESNWYLLQNRIVKARLNGGLHSTGELVDLIRGTSPASRGGRQGWIKT  228 (303)
T ss_pred             ceeecCCCccceeeeecccchhhHHHHHHHhhhhhHHHHHHhhhHHhhhccccccchhHHHHhccCCccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999989888889999999


Q ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHhhh
Q 012954          328 ATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSII  384 (452)
Q Consensus       328 ATR~FQALRI~VN~EL~~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~  384 (452)
                      |||+||+|||+|||||++|...|--+.++|.||||+++|||||||||+||+.|....
T Consensus       229 atk~fqg~ri~vnnel~~~~~~~~l~~~vl~~~grl~~isfhSLed~vvkr~~~~i~  285 (303)
T KOG2782|consen  229 ATKVFQGLRIAVNNELKTLQNSLYLSFDVLAPGGRLAVISFHSLEDRVVKRTFLDIL  285 (303)
T ss_pred             cchhhhhHHHHhhhhhhhccCceeccccccCCCccEEEEEhhhHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999999999999999999998753

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.82  E-value=3.6e-09  Score=96.31  Aligned_cols=57  Identities=16%  Similarity=0.251  Sum_probs=45.1

Q ss_pred             EEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          160 LHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       160 ~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      +|||||+|++||+.|+++|++.+.     ..|+++++++|++|++++++       ..||+++|||||=
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----~~~v~li~~sHe~l~~~i~~-------~~v~~~iFNLGYL   57 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGL-----EDRVTLILDSHENLDEYIPE-------GPVDAAIFNLGYL   57 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES-GGGGGGT--S---------EEEEEEEESB-
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCC-----CCcEEEEECCHHHHHhhCcc-------CCcCEEEEECCcC
Confidence            589999999999999999998764     34899999999999988875       2699999999993

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.53  E-value=5.8e-06  Score=81.54  Aligned_cols=108  Identities=19%  Similarity=0.126  Sum_probs=79.4

Q ss_pred             CccCCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954           99 SNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL  178 (452)
Q Consensus        99 ~~~~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL  178 (452)
                      .-.+|..+.+..++...-.++      ..|. ++++..++|+..|.||.|..|.+.+++.+.|+|+|+++..++.+++++
T Consensus        44 ~~~~~~~G~~~~qd~~s~~~~------~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~  116 (264)
T TIGR00446        44 STPEYLSGLYYIQEASSMIPP------LALE-PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANI  116 (264)
T ss_pred             cChhHhCCeEEEECHHHHHHH------HHhC-CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH
Confidence            334566665555555444333      2444 468899999999999999999998877788999999999999999999


Q ss_pred             hhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          179 NSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       179 ~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      +..+.      .++.+++.+...+...         ...+|.||+|-=+|
T Consensus       117 ~~~g~------~~v~~~~~D~~~~~~~---------~~~fD~Vl~D~Pcs  151 (264)
T TIGR00446       117 NRCGV------LNVAVTNFDGRVFGAA---------VPKFDAILLDAPCS  151 (264)
T ss_pred             HHcCC------CcEEEecCCHHHhhhh---------ccCCCEEEEcCCCC
Confidence            87653      2577777776544211         12599999998766

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.40  E-value=2.6e-06  Score=71.98  Aligned_cols=83  Identities=20%  Similarity=0.186  Sum_probs=62.7

Q ss_pred             CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccc
Q 012954          134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENI  213 (452)
Q Consensus       134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l  213 (452)
                      |..++|...|.|-=+.++++..  ...++|+|+|+.+++.|+.++...+.     ..++.++++++..+.+.+.      
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~------   67 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDARDLPEPLP------   67 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHHHHHHTCT------
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchhhchhhcc------
Confidence            4579999999997777777766  35799999999999999998877643     2478999999877653332      


Q ss_pred             cccCccEEEEccCCCcc
Q 012954          214 LRSGVDAILMDLGMSSM  230 (452)
Q Consensus       214 ~~~~VDGILfDLGvSS~  230 (452)
                       ...+|.|++|.=|...
T Consensus        68 -~~~~D~Iv~npP~~~~   83 (117)
T PF13659_consen   68 -DGKFDLIVTNPPYGPR   83 (117)
T ss_dssp             -TT-EEEEEE--STTSB
T ss_pred             -CceeEEEEECCCCccc
Confidence             2479999999988643

...

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.03  E-value=2.4e-05  Score=74.45  Aligned_cols=93  Identities=12%  Similarity=0.089  Sum_probs=74.1

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      .|.++..+++.|. .+++..++|...|.|..+..+.+..+..++|+|+|+++++++.|+++++.++.      .++++++
T Consensus        62 ~p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~  134 (215)
T TIGR00080        62 APHMVAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIV  134 (215)
T ss_pred             hHHHHHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEE
Confidence            4678899999997 57899999999999999988887776667899999999999999999987653      2678888


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++....   +..      ...+|.|++|.
T Consensus       135 ~d~~~~---~~~------~~~fD~Ii~~~  154 (215)
T TIGR00080       135 GDGTQG---WEP------LAPYDRIYVTA  154 (215)
T ss_pred             CCcccC---Ccc------cCCCCEEEEcC
Confidence            776432   111      13699999874

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.99  E-value=4.5e-05  Score=70.20  Aligned_cols=77  Identities=17%  Similarity=0.175  Sum_probs=57.1

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      +++.++|.-.|.|-=+..+++..+.. +|+++|+++.|++.|++.++..+.     . .+++++.+..+      ..   
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~-~v~~vDi~~~a~~~a~~n~~~n~~-----~-~v~~~~~d~~~------~~---   94 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDA-KVTAVDINPDALELAKRNAERNGL-----E-NVEVVQSDLFE------AL---   94 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCE-EEEEEESBHHHHHHHHHHHHHTTC-----T-TEEEEESSTTT------TC---
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHHHhcCc-----c-ccccccccccc------cc---
Confidence            56899999999998888888877763 599999999999999998877643     1 27777766432      11   


Q ss_pred             ccccCccEEEEccC
Q 012954          213 ILRSGVDAILMDLG  226 (452)
Q Consensus       213 l~~~~VDGILfDLG  226 (452)
                       ....+|.|+.|-=
T Consensus        95 -~~~~fD~Iv~NPP  107 (170)
T PF05175_consen   95 -PDGKFDLIVSNPP  107 (170)
T ss_dssp             -CTTCEEEEEE---
T ss_pred             -cccceeEEEEccc
Confidence             1247999999865

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.96  E-value=0.00032  Score=70.17  Aligned_cols=89  Identities=18%  Similarity=0.196  Sum_probs=66.2

Q ss_pred             cchHHHHh-hccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          119 VMLGEVLD-VFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       119 VLl~Evl~-~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      +++.+++. .+. ..++..++|...|.|..+.++++..++ .+++|+|+++.|++.|+++.+.++.     ..++.++++
T Consensus       107 ~lv~~~l~~~~~-~~~~~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~-----~~~i~~~~~  179 (284)
T TIGR03533       107 ELIEDGFAPWLE-PEPVKRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGL-----EDRVTLIQS  179 (284)
T ss_pred             HHHHHHHHHHhc-cCCCCEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEC
Confidence            56666665 342 234578999999999999999988876 4799999999999999998876543     136888887


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEc
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      +...   .+.       ...+|.|+.|
T Consensus       180 D~~~---~~~-------~~~fD~Iv~N  196 (284)
T TIGR03533       180 DLFA---ALP-------GRKYDLIVSN  196 (284)
T ss_pred             chhh---ccC-------CCCccEEEEC
Confidence            7521   111       1358999988

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.93  E-value=6.9e-05  Score=79.26  Aligned_cols=89  Identities=15%  Similarity=0.180  Sum_probs=72.1

Q ss_pred             hccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHH
Q 012954          127 VFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVL  206 (452)
Q Consensus       127 ~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L  206 (452)
                      .|. +.++..++|++.|.||-|..+++..++.+.|+|+|+++..++.++++++..+.      .++++++.+...+...+
T Consensus       232 ~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~l~~~~  304 (431)
T PRK14903        232 LME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAERLTEYV  304 (431)
T ss_pred             HhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhhhhhhh
Confidence            344 56889999999999999999999987778999999999999999999987653      25777787766554332


Q ss_pred             hhhcccccccCccEEEEccCCCcc
Q 012954          207 GQIDENILRSGVDAILMDLGMSSM  230 (452)
Q Consensus       207 ~~~~~~l~~~~VDGILfDLGvSS~  230 (452)
                      .        ..+|.||+|-=+|+.
T Consensus       305 ~--------~~fD~Vl~DaPCsg~  320 (431)
T PRK14903        305 Q--------DTFDRILVDAPCTSL  320 (431)
T ss_pred             h--------ccCCEEEECCCCCCC
Confidence            2        369999999888864

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.92  E-value=0.00014  Score=73.83  Aligned_cols=90  Identities=18%  Similarity=0.079  Sum_probs=64.8

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .|..-++.... .+++..++|.-+|.|+...+... .  ...++|+|+|+.+++.|+++++.++..      .+.+++.+
T Consensus       169 ~la~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~-~--~~~v~g~Di~~~~~~~a~~nl~~~g~~------~i~~~~~D  238 (329)
T TIGR01177       169 KLARAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGL-M--GAKVIGCDIDWKMVAGARINLEHYGIE------DFFVKRGD  238 (329)
T ss_pred             HHHHHHHHHhC-CCCcCEEEECCCCCCHHHHHHHH-h--CCeEEEEcCCHHHHHHHHHHHHHhCCC------CCeEEecc
Confidence            34444444444 46888999999999988766433 2  246999999999999999999887642      36778888


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCC
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +.++..         ....+|.|+.|-=|
T Consensus       239 ~~~l~~---------~~~~~D~Iv~dPPy  258 (329)
T TIGR01177       239 ATKLPL---------SSESVDAIATDPPY  258 (329)
T ss_pred             hhcCCc---------ccCCCCEEEECCCC
Confidence            876421         12369999999544

This family is found exclusively in the Archaea.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.86  E-value=7.9e-05  Score=78.67  Aligned_cols=87  Identities=16%  Similarity=0.189  Sum_probs=69.3

Q ss_pred             hccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHH
Q 012954          127 VFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVL  206 (452)
Q Consensus       127 ~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L  206 (452)
                      .|. +.++..++|+..|.||.|..+++.+++.++|+|+|+++.+++.++++++.++.      .++.++++++..+...+
T Consensus       245 ~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~  317 (444)
T PRK14902        245 ALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVHEKF  317 (444)
T ss_pred             HhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCcccccchh
Confidence            444 45788999999999999999999886567899999999999999999987653      25888888876643222


Q ss_pred             hhhcccccccCccEEEEccCCC
Q 012954          207 GQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       207 ~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      .        ..+|.|++|--+|
T Consensus       318 ~--------~~fD~Vl~D~Pcs  331 (444)
T PRK14902        318 A--------EKFDKILVDAPCS  331 (444)
T ss_pred             c--------ccCCEEEEcCCCC
Confidence            1        3699999997665

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.85  E-value=4e-05  Score=71.61  Aligned_cols=133  Identities=17%  Similarity=0.263  Sum_probs=79.4

Q ss_pred             CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954          135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL  214 (452)
Q Consensus       135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~  214 (452)
                      .+++|+|.|.||.+.++....   .+|+|+|+|+.-++.|+.+.+-|+-     ..++.+++++|.++.   ....    
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~~~~---~~~~----   65 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFFELL---KRLK----   65 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHG---GGB-----
T ss_pred             CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHHHHH---hhcc----
Confidence            378999999999999999874   3699999999999999999999874     248999999998743   3221    


Q ss_pred             ccC-ccEEEEccCCCccCCCCCCCCcccCCCCCCcc--cCCCCCCCCHHHHHhcCChHHHHHHHHHhCCCcchHHHHHHH
Q 012954          215 RSG-VDAILMDLGMSSMQVNNPERGFSVLGDGPLDM--RMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKI  291 (452)
Q Consensus       215 ~~~-VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDM--RMD~~~~~tAadiLN~~se~eL~~Ifr~YGEE~~A~rIA~aI  291 (452)
                      ... +|.|++|         -|=-|-+|......|+  .|.|   .            .|.++++.      +.+++..|
T Consensus        66 ~~~~~D~vFlS---------PPWGGp~Y~~~~~fdL~~~~~p---~------------~~~~l~~~------~~~~t~nv  115 (163)
T PF09445_consen   66 SNKIFDVVFLS---------PPWGGPSYSKKDVFDLEKSMQP---F------------NLEDLLKA------ARKITPNV  115 (163)
T ss_dssp             -----SEEEE------------BSSGGGGGSSSB-TTTSSSS-----------------HHHHHHH------HHHH-S-E
T ss_pred             ccccccEEEEC---------CCCCCccccccCccCHHHccCC---C------------CHHHHHHH------HHhhCCCE
Confidence            112 6888764         3445688888777777  4443   2            33344443      56666665


Q ss_pred             HHHHhhCCCCcHHHHHHHHHhhC
Q 012954          292 VQARLRGGLHSTGELVDLIQSVT  314 (452)
Q Consensus       292 v~~R~~~~i~TT~eLa~iI~~~~  314 (452)
                      +-.--  +=....||+++..+..
T Consensus       116 ~l~LP--Rn~dl~ql~~~~~~l~  136 (163)
T PF09445_consen  116 VLFLP--RNSDLNQLSQLTRELF  136 (163)
T ss_dssp             EEEEE--TTB-HHHHHHT----T
T ss_pred             EEEeC--CCCCHHHHHHHhcccc
Confidence            53211  1235566766655543

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.84  E-value=8.9e-05  Score=70.33  Aligned_cols=96  Identities=13%  Similarity=0.111  Sum_probs=74.6

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      .|-++..+++.|. +.++..++|.-.|.|..+..+.+.++..++|+|+|+++++++.|+++++..+.     ..++++++
T Consensus        57 ~p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----~~~v~~~~  130 (205)
T PRK13944         57 APHMVAMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----WGVVEVYH  130 (205)
T ss_pred             hHHHHHHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEEE
Confidence            4667888999997 46889999999999988877777776567899999999999999998876543     23678888


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +++.+.   +..      ...+|.|+++.++
T Consensus       131 ~d~~~~---~~~------~~~fD~Ii~~~~~  152 (205)
T PRK13944        131 GDGKRG---LEK------HAPFDAIIVTAAA  152 (205)
T ss_pred             CCcccC---Ccc------CCCccEEEEccCc
Confidence            877542   111      1369999998653

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=97.84  E-value=0.00029  Score=65.45  Aligned_cols=89  Identities=13%  Similarity=0.218  Sum_probs=64.7

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .....+++.+. ..++..++|...|.|..+..+++.++..++++|+|+++.+++.+++++. .       ..++.+++.+
T Consensus        26 ~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-------~~~i~~~~~d   96 (223)
T TIGR01934        26 LWRRRAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-------PLNIEFIQAD   96 (223)
T ss_pred             HHHHHHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-------CCCceEEecc
Confidence            34456677775 3478899999999999999999888764579999999999999988765 1       1256677777


Q ss_pred             cchHHHHHhhhcccccccCccEEEEcc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +.++.  ..       ...+|.|++..
T Consensus        97 ~~~~~--~~-------~~~~D~i~~~~  114 (223)
T TIGR01934        97 AEALP--FE-------DNSFDAVTIAF  114 (223)
T ss_pred             hhcCC--CC-------CCcEEEEEEee
Confidence            65432  11       13588876543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.82  E-value=0.00064  Score=68.95  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=65.4

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .++.+++..+....+...++|...|.|..+..++...|. ..|+|+|+++.|++.|+++++.++.     ..++++++++
T Consensus       119 ~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l-----~~~i~~~~~D  192 (307)
T PRK11805        119 ELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGL-----EDRVTLIESD  192 (307)
T ss_pred             HHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCC-----CCcEEEEECc
Confidence            355666653321222368999999999999999988876 4699999999999999998876543     2368888887


Q ss_pred             cchHHHHHhhhcccccccCccEEEEc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      +..   .+.       ...+|.|+.|
T Consensus       193 ~~~---~l~-------~~~fDlIvsN  208 (307)
T PRK11805        193 LFA---ALP-------GRRYDLIVSN  208 (307)
T ss_pred             hhh---hCC-------CCCccEEEEC
Confidence            532   121       1358999988

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.80  E-value=0.0001  Score=70.48  Aligned_cols=96  Identities=10%  Similarity=0.066  Sum_probs=75.1

Q ss_pred             CccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE
Q 012954          115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT  194 (452)
Q Consensus       115 ~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l  194 (452)
                      .-.|-|...+++.+. ..++..++|...|.|..|..+.+..+..++|+|+|++++.++.|+++++..+.      .++++
T Consensus        59 ~~~p~~~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~  131 (212)
T PRK13942         59 ISAIHMVAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEV  131 (212)
T ss_pred             eCcHHHHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEE
Confidence            356788999999997 57899999999999988877776666667899999999999999999987643      36888


Q ss_pred             EccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954          195 FAKNFRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       195 i~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      ++++..+.   +..      ...+|.|+++..
T Consensus       132 ~~gd~~~~---~~~------~~~fD~I~~~~~  154 (212)
T PRK13942        132 IVGDGTLG---YEE------NAPYDRIYVTAA  154 (212)
T ss_pred             EECCcccC---CCc------CCCcCEEEECCC
Confidence            88886532   111      236999998644

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.79  E-value=0.00016  Score=60.35  Aligned_cols=78  Identities=18%  Similarity=0.138  Sum_probs=61.4

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      |++.++|.=.|.|..+..+++..+. .+|+|+|.++++++.|+++......     ..+++++++++ .   .....   
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~-~---~~~~~---   67 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPG-ARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDA-E---FDPDF---   67 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCC-H---GGTTT---
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECcc-c---cCccc---
Confidence            5788999999999999999997666 4699999999999999999844332     35899999998 2   11111   


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                        ...+|.|+.+.
T Consensus        68 --~~~~D~v~~~~   78 (112)
T PF12847_consen   68 --LEPFDLVICSG   78 (112)
T ss_dssp             --SSCEEEEEECS
T ss_pred             --CCCCCEEEECC
Confidence              23699999888

...

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.74  E-value=0.00022  Score=67.65  Aligned_cols=113  Identities=12%  Similarity=0.201  Sum_probs=82.4

Q ss_pred             cccCCccCCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHH
Q 012954           95 RRTRSNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA  174 (452)
Q Consensus        95 ~r~~~~~~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~A  174 (452)
                      ||.-+.+++++.+.  ..+..-+|=|..+..+.+.  .++..++|.-+|.|.++..+++..|. ..|+|+|.++++++.|
T Consensus         6 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a   80 (202)
T PRK00121          6 RRRGRLTKGQQRAI--EELWPRLSPAPLDWAELFG--NDAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKA   80 (202)
T ss_pred             hhccccccchhhhh--cccchhhcCCCCCHHHHcC--CCCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHH
Confidence            34445667776644  2333344446777777775  37789999999999999999988776 4699999999999999


Q ss_pred             HHHHhhhccCCCCCCceEEEEccCc-chHHHHHhhhcccccccCccEEEEcc
Q 012954          175 RAHLNSLLHGQAHPHLKTHTFAKNF-RHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       175 k~rL~~~~~~~~~~~~r~~li~~nF-~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +++++..+.      .++.+++++. ..+...+.       ...+|.|++++
T Consensus        81 ~~~~~~~~~------~~v~~~~~d~~~~l~~~~~-------~~~~D~V~~~~  119 (202)
T PRK00121         81 LKKIEEEGL------TNLRLLCGDAVEVLLDMFP-------DGSLDRIYLNF  119 (202)
T ss_pred             HHHHHHcCC------CCEEEEecCHHHHHHHHcC-------ccccceEEEEC
Confidence            988866432      3688899988 66654432       23699998764

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=97.73  E-value=0.0002  Score=67.96  Aligned_cols=90  Identities=18%  Similarity=0.193  Sum_probs=69.9

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      +++++.+. ..++..++|+-.|.|.-+..+.+..++.+.|+|+|+++.+++.|+++++....      .++.+++++...
T Consensus        35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~  107 (231)
T TIGR02752        35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAME  107 (231)
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechhc
Confidence            66777776 46788999999999999998888876667899999999999999998865432      367888887755


Q ss_pred             HHHHHhhhcccccccCccEEEEccCC
Q 012954          202 IKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +.  +       ....+|.|++++++
T Consensus       108 ~~--~-------~~~~fD~V~~~~~l  124 (231)
T TIGR02752       108 LP--F-------DDNSFDYVTIGFGL  124 (231)
T ss_pred             CC--C-------CCCCccEEEEeccc
Confidence            32  1       12469999987554

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.73  E-value=0.00023  Score=59.97  Aligned_cols=89  Identities=12%  Similarity=0.068  Sum_probs=65.7

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ...+++.+. ..++..++|.-.|.|.++..+++..|+ ++|+|+|.++.+++.+++.++.++.      .+++++.++..
T Consensus         8 ~~~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~   79 (124)
T TIGR02469         8 RALTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGV------SNIVIVEGDAP   79 (124)
T ss_pred             HHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEecccc
Confidence            344566665 346789999999999999999998877 5799999999999999988876643      25777776654


Q ss_pred             hHHHHHhhhcccccccCccEEEEcc
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +.   +...     ...+|.|+.+.
T Consensus        80 ~~---~~~~-----~~~~D~v~~~~   96 (124)
T TIGR02469        80 EA---LEDS-----LPEPDRVFIGG   96 (124)
T ss_pred             cc---Chhh-----cCCCCEEEECC
Confidence            32   1111     13699998854

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.68  E-value=0.00057  Score=64.78  Aligned_cols=74  Identities=16%  Similarity=0.018  Sum_probs=58.8

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|.-.|.|..+..++...+. ++|+|+|.++++++.|+++++..+.      .++++++++..++..        
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~~~~--------  109 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEEFGQ--------  109 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhhCCC--------
Confidence            4789999999999888888877765 5799999999999999998877643      248888887765321        


Q ss_pred             ccccCccEEEE
Q 012954          213 ILRSGVDAILM  223 (452)
Q Consensus       213 l~~~~VDGILf  223 (452)
                        ...+|.|+.
T Consensus       110 --~~~fDlV~~  118 (187)
T PRK00107        110 --EEKFDVVTS  118 (187)
T ss_pred             --CCCccEEEE
Confidence              136999996

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.67  E-value=0.00036  Score=65.56  Aligned_cols=96  Identities=18%  Similarity=0.108  Sum_probs=70.0

Q ss_pred             ccccchHHHH----hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          116 HIPVMLGEVL----DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       116 H~PVLl~Evl----~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      |.|+.-.|+-    ..+. ..++..++|...|.|..+.+++...+..++|+|+|+++.+++.|+++++.++.     ..+
T Consensus        20 ~~~~t~~~~r~~~l~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----~~~   93 (198)
T PRK00377         20 EIPMTKEEIRALALSKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----LNN   93 (198)
T ss_pred             CCCCCHHHHHHHHHHHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCC
Confidence            6775545542    3333 35889999999999999999988776667899999999999999998877652     136


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +.++++++.+.   +....     ..+|.|+.+.
T Consensus        94 v~~~~~d~~~~---l~~~~-----~~~D~V~~~~  119 (198)
T PRK00377         94 IVLIKGEAPEI---LFTIN-----EKFDRIFIGG  119 (198)
T ss_pred             eEEEEechhhh---HhhcC-----CCCCEEEECC
Confidence            78888776542   33221     3689998753

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.66  E-value=0.00023  Score=75.13  Aligned_cols=93  Identities=19%  Similarity=0.182  Sum_probs=72.2

Q ss_pred             HhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH
Q 012954          125 LDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS  204 (452)
Q Consensus       125 l~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~  204 (452)
                      ...|. ++++..++|+..|.||-|..|++..++.++|+|+|+++..++.++++++.++.      .++++++.+...+..
T Consensus       245 ~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~~  317 (434)
T PRK14901        245 APLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLLE  317 (434)
T ss_pred             HHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhccc
Confidence            34554 46889999999999999999999887778999999999999999999988754      258888887765532


Q ss_pred             HHhhhcccccccCccEEEEccCCCc
Q 012954          205 VLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       205 ~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      ....     ....+|.||+|-=+|.
T Consensus       318 ~~~~-----~~~~fD~Vl~DaPCSg  337 (434)
T PRK14901        318 LKPQ-----WRGYFDRILLDAPCSG  337 (434)
T ss_pred             cccc-----ccccCCEEEEeCCCCc
Confidence            2111     0236999999977665

>PRK14968 putative methyltransferase; Provisional

Probab=97.59  E-value=0.0031  Score=57.24  Aligned_cols=85  Identities=13%  Similarity=0.127  Sum_probs=58.3

Q ss_pred             HhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH
Q 012954          125 LDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS  204 (452)
Q Consensus       125 l~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~  204 (452)
                      ++.+. ..++..++|...|.|..+..+++.  . ..++|+|+++++++.+++++...+..    ..++.+++.++..   
T Consensus        16 ~~~~~-~~~~~~vLd~G~G~G~~~~~l~~~--~-~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~---   84 (188)
T PRK14968         16 AENAV-DKKGDRVLEVGTGSGIVAIVAAKN--G-KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLFE---   84 (188)
T ss_pred             HHhhh-ccCCCEEEEEccccCHHHHHHHhh--c-ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEeccccc---
Confidence            34443 247789999999999988888876  2 57999999999999999887654321    0015666655422   


Q ss_pred             HHhhhcccccccCccEEEEccCC
Q 012954          205 VLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       205 ~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      .+.       ...+|.|++|..|
T Consensus        85 ~~~-------~~~~d~vi~n~p~  100 (188)
T PRK14968         85 PFR-------GDKFDVILFNPPY  100 (188)
T ss_pred             ccc-------ccCceEEEECCCc
Confidence            111       1258889887654

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=97.49  E-value=0.00043  Score=61.88  Aligned_cols=80  Identities=14%  Similarity=0.106  Sum_probs=62.6

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      .+..++|.-+|.|..+..+++.+.+.+.++|+|.++++++.|+++++..+.      .++++++++..+++..+.     
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~l~~~~~-----   71 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIEDLPQELE-----   71 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTCGCGCSS-----
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhccccccC-----
Confidence            567999999999988888886655557899999999999999998877653      379999999887532211     


Q ss_pred             ccccCccEEEEccC
Q 012954          213 ILRSGVDAILMDLG  226 (452)
Q Consensus       213 l~~~~VDGILfDLG  226 (452)
                         ..+|.|+.+..
T Consensus        72 ---~~~D~I~~~~~   82 (152)
T PF13847_consen   72 ---EKFDIIISNGV   82 (152)
T ss_dssp             ---TTEEEEEEEST
T ss_pred             ---CCeeEEEEcCc
Confidence               36999888833

...

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.48  E-value=0.00056  Score=69.20  Aligned_cols=97  Identities=11%  Similarity=0.227  Sum_probs=79.0

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      .|+-+-|.+++.+++.+. ..++..++|.-.|.|..|..+++..   .+|+|+|+|+.+++.+++++..++.     ..+
T Consensus        16 QnFL~d~~i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~-----~~~   86 (294)
T PTZ00338         16 QHILKNPLVLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPL-----ASK   86 (294)
T ss_pred             ccccCCHHHHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCC-----CCc
Confidence            667788999999999997 4688999999999999999999863   3599999999999999998876432     237


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      ++++++++-.++  +         ..+|.|+.||-|.
T Consensus        87 v~ii~~Dal~~~--~---------~~~d~VvaNlPY~  112 (294)
T PTZ00338         87 LEVIEGDALKTE--F---------PYFDVCVANVPYQ  112 (294)
T ss_pred             EEEEECCHhhhc--c---------cccCEEEecCCcc
Confidence            899999886532  1         2478899888874

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.46  E-value=0.0005  Score=70.46  Aligned_cols=98  Identities=11%  Similarity=0.102  Sum_probs=75.5

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      -.|.|+..+++.+. .+++..++|...|.|.-+..+.+..+..+.|+|+|+++++++.|++.++..+.      .+++++
T Consensus        64 ~~p~l~a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i  136 (322)
T PRK13943         64 SQPSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFV  136 (322)
T ss_pred             CcHHHHHHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEE
Confidence            36889999999986 46889999999999877777776676556799999999999999998877643      367778


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      +++...   .+...      ..+|.|+++.|+..
T Consensus       137 ~gD~~~---~~~~~------~~fD~Ii~~~g~~~  161 (322)
T PRK13943        137 CGDGYY---GVPEF------APYDVIFVTVGVDE  161 (322)
T ss_pred             eCChhh---ccccc------CCccEEEECCchHH
Confidence            776532   22211      35999999988654

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.45  E-value=0.0011  Score=61.92  Aligned_cols=76  Identities=13%  Similarity=0.081  Sum_probs=58.0

Q ss_pred             cccchHHHH----hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceE
Q 012954          117 IPVMLGEVL----DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKT  192 (452)
Q Consensus       117 ~PVLl~Evl----~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~  192 (452)
                      +|+.-.|+-    +.|. ..+++.++|.-.|.|.++..++...+. ++|+|+|+|+++++.++++++.++.      .++
T Consensus        21 ~p~t~~~v~~~l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~~~~------~~v   92 (196)
T PRK07402         21 IPLTKREVRLLLISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDRFGV------KNV   92 (196)
T ss_pred             CCCCHHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCC------CCe
Confidence            455544443    3443 457889999999999999999876665 5799999999999999998887643      257


Q ss_pred             EEEccCcc
Q 012954          193 HTFAKNFR  200 (452)
Q Consensus       193 ~li~~nF~  200 (452)
                      ++++++..
T Consensus        93 ~~~~~d~~  100 (196)
T PRK07402         93 EVIEGSAP  100 (196)
T ss_pred             EEEECchH
Confidence            77777653

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.43  E-value=0.00079  Score=70.95  Aligned_cols=90  Identities=19%  Similarity=0.297  Sum_probs=69.4

Q ss_pred             HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHH
Q 012954          124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIK  203 (452)
Q Consensus       124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~  203 (452)
                      ++..|. +.++..++|+..|.||.|..+++..+. ++|+|+|+++.+++.++++++.++.       ++++++.+..++.
T Consensus       236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~~~  306 (427)
T PRK10901        236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARDPA  306 (427)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCcccch
Confidence            344554 468899999999999999999998865 6899999999999999999887643       3566777666543


Q ss_pred             HHHhhhcccccccCccEEEEccCCCc
Q 012954          204 SVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       204 ~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      ..+.       ...+|.|++|-=+|.
T Consensus       307 ~~~~-------~~~fD~Vl~D~Pcs~  325 (427)
T PRK10901        307 QWWD-------GQPFDRILLDAPCSA  325 (427)
T ss_pred             hhcc-------cCCCCEEEECCCCCc
Confidence            3221       136999999988763

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.40  E-value=0.00096  Score=71.74  Aligned_cols=112  Identities=15%  Similarity=0.064  Sum_probs=84.1

Q ss_pred             CccCCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954           99 SNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL  178 (452)
Q Consensus        99 ~~~~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL  178 (452)
                      ....|..+.+..|+.....||.+-.    +. ++++..++|++.|-||=|.+|++.+++.|.|+|.|+++.=++..++++
T Consensus        84 ~~~~~~~G~~yvQd~sS~l~~~~L~----~~-~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl  158 (470)
T PRK11933         84 NTAEHLSGLFYIQEASSMLPVAALF----AD-DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANI  158 (470)
T ss_pred             cChHHHCCcEEEECHHHHHHHHHhc----cC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Confidence            3445666766666666666554211    13 468999999999999999999999988889999999999999999999


Q ss_pred             hhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          179 NSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       179 ~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      +.++.      .++.+.+.+-..+...+.        ..+|.||+|-=+|.
T Consensus       159 ~r~G~------~nv~v~~~D~~~~~~~~~--------~~fD~ILvDaPCSG  195 (470)
T PRK11933        159 SRCGV------SNVALTHFDGRVFGAALP--------ETFDAILLDAPCSG  195 (470)
T ss_pred             HHcCC------CeEEEEeCchhhhhhhch--------hhcCeEEEcCCCCC
Confidence            98864      256666655544433222        35999999999986

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.37  E-value=0.00058  Score=65.97  Aligned_cols=96  Identities=15%  Similarity=0.205  Sum_probs=72.9

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      .|-|.-.+++.|. .+|+..++|.-.|.| +..++|.. .++.++|+++|+|+...+.|+++|+..+.      .++.++
T Consensus        57 ~P~~~a~~l~~L~-l~pg~~VLeIGtGsG-Y~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~  128 (209)
T PF01135_consen   57 APSMVARMLEALD-LKPGDRVLEIGTGSG-YQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVV  128 (209)
T ss_dssp             -HHHHHHHHHHTT-C-TT-EEEEES-TTS-HHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEE
T ss_pred             HHHHHHHHHHHHh-cCCCCEEEEecCCCc-HHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEE
Confidence            4779999999998 689999999999998 77788877 46677899999999999999999998754      378888


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      +++-..-   +.+      ...+|.|++.-++..
T Consensus       129 ~gdg~~g---~~~------~apfD~I~v~~a~~~  153 (209)
T PF01135_consen  129 VGDGSEG---WPE------EAPFDRIIVTAAVPE  153 (209)
T ss_dssp             ES-GGGT---TGG------G-SEEEEEESSBBSS
T ss_pred             Ecchhhc---ccc------CCCcCEEEEeeccch
Confidence            8765321   111      236999999988864

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.37  E-value=0.0011  Score=70.37  Aligned_cols=87  Identities=21%  Similarity=0.216  Sum_probs=67.8

Q ss_pred             hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH
Q 012954          126 DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV  205 (452)
Q Consensus       126 ~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~  205 (452)
                      ..|. +.++..++|+..|.||-|..+.+.+++.++|+|+|+++.+++.++++++..+.      .++.+++.+...+.  
T Consensus       244 ~~l~-~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~~--  314 (445)
T PRK14904        244 LLLN-PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSFS--  314 (445)
T ss_pred             HhcC-CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCcccccc--
Confidence            3454 45888999999999999999998877667899999999999999999987653      25777776654431  


Q ss_pred             HhhhcccccccCccEEEEccCCCc
Q 012954          206 LGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       206 L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                       .       ...+|.|++|--+|.
T Consensus       315 -~-------~~~fD~Vl~D~Pcsg  330 (445)
T PRK14904        315 -P-------EEQPDAILLDAPCTG  330 (445)
T ss_pred             -c-------CCCCCEEEEcCCCCC
Confidence             1       136999999966654

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.35  E-value=0.001  Score=69.97  Aligned_cols=94  Identities=18%  Similarity=0.208  Sum_probs=67.9

Q ss_pred             HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH
Q 012954          123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI  202 (452)
Q Consensus       123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i  202 (452)
                      -+...|. +.++..++|+..|.||-|..+++..+ .++|+|+|+++..++.++++++.++.     ..+++++.++-..+
T Consensus       229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~-----~~~v~~~~~d~~~~  301 (426)
T TIGR00563       229 WVATWLA-PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGL-----TIKAETKDGDGRGP  301 (426)
T ss_pred             HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeccccccc
Confidence            3455565 46889999999999999999999887 57899999999999999999987653     12344444432222


Q ss_pred             HHHHhhhcccccccCccEEEEccCCCcc
Q 012954          203 KSVLGQIDENILRSGVDAILMDLGMSSM  230 (452)
Q Consensus       203 ~~~L~~~~~~l~~~~VDGILfDLGvSS~  230 (452)
                      ....       ....+|.|+.|==+|+.
T Consensus       302 ~~~~-------~~~~fD~VllDaPcSg~  322 (426)
T TIGR00563       302 SQWA-------ENEQFDRILLDAPCSAT  322 (426)
T ss_pred             cccc-------cccccCEEEEcCCCCCC
Confidence            1110       12369999999777764

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.32  E-value=0.0012  Score=69.93  Aligned_cols=96  Identities=15%  Similarity=0.146  Sum_probs=71.4

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      ..+|++++++++. ..++..++|+-.|.|..+..+++..   .+|+|+|++++|++.|+++++..+.      .++++++
T Consensus       282 ~e~l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~  351 (443)
T PRK13168        282 NQKMVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL------DNVTFYH  351 (443)
T ss_pred             HHHHHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEE
Confidence            3568999999996 4578899999999999999988764   4699999999999999998765532      2578888


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ++..+.   +....  +....+|.|++|-=+
T Consensus       352 ~d~~~~---l~~~~--~~~~~fD~Vi~dPPr  377 (443)
T PRK13168        352 ANLEED---FTDQP--WALGGFDKVLLDPPR  377 (443)
T ss_pred             eChHHh---hhhhh--hhcCCCCEEEECcCC
Confidence            877542   21110  011358999887544

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.24  E-value=0.0021  Score=62.69  Aligned_cols=101  Identities=15%  Similarity=0.116  Sum_probs=74.1

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      ++|....+.+..|....+.+.++|.-.|.|.=+..|+..+++.++|+++|+|+++++.|++.++.++.     ..+++++
T Consensus        51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----~~~i~~~  125 (234)
T PLN02781         51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----DHKINFI  125 (234)
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEE
Confidence            55666666676665444678999999999966777877788778999999999999999999988764     2478888


Q ss_pred             ccCcchH-HHHHhhhcccccccCccEEEEcc
Q 012954          196 AKNFRHI-KSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       196 ~~nF~~i-~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +++..+. +.+... +   ....+|.|++|-
T Consensus       126 ~gda~~~L~~l~~~-~---~~~~fD~VfiDa  152 (234)
T PLN02781        126 QSDALSALDQLLNN-D---PKPEFDFAFVDA  152 (234)
T ss_pred             EccHHHHHHHHHhC-C---CCCCCCEEEECC
Confidence            8886543 222221 1   013699999874

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.22  E-value=0.0013  Score=54.80  Aligned_cols=71  Identities=20%  Similarity=0.237  Sum_probs=53.3

Q ss_pred             EEEEccCCChhHHHHHHhCCC--CCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954          137 FVDCTLGAAGHSSAIIRAHPE--LKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL  214 (452)
Q Consensus       137 yVDaTlG~GGHS~aIL~~~p~--~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~  214 (452)
                      ++|...|.|-++..+++.++.  ...++|+|+++++++.++++....+       .++++++.++.++..    .     
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-------~~~~~~~~D~~~l~~----~-----   64 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-------PKVRFVQADARDLPF----S-----   64 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-------TTSEEEESCTTCHHH----H-----
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-------CceEEEECCHhHCcc----c-----
Confidence            589999999999999998722  2579999999999999998876532       257789999988752    1     


Q ss_pred             ccCccEEEE
Q 012954          215 RSGVDAILM  223 (452)
Q Consensus       215 ~~~VDGILf  223 (452)
                      ...+|.|+.
T Consensus        65 ~~~~D~v~~   73 (101)
T PF13649_consen   65 DGKFDLVVC   73 (101)
T ss_dssp             SSSEEEEEE
T ss_pred             CCCeeEEEE
Confidence            236998888

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.20  E-value=0.0038  Score=57.89  Aligned_cols=89  Identities=16%  Similarity=0.192  Sum_probs=64.4

Q ss_pred             ccccchHH----HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          116 HIPVMLGE----VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       116 H~PVLl~E----vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      ++|+...+    +++.|. ..++..++|.-.|.|.++..+++..+. ++|+|+|+++.+++.|+++++.++.      .+
T Consensus        11 ~~~~~~~~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~~~~------~~   82 (187)
T PRK08287         11 KVPMTKEEVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQRFGC------GN   82 (187)
T ss_pred             CCCCchHHHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCC------CC
Confidence            44544444    345565 357889999999999999999988766 5799999999999999988876542      25


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEE
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILM  223 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILf  223 (452)
                      +++++++..   ..+        ...+|.|++
T Consensus        83 i~~~~~d~~---~~~--------~~~~D~v~~  103 (187)
T PRK08287         83 IDIIPGEAP---IEL--------PGKADAIFI  103 (187)
T ss_pred             eEEEecCch---hhc--------CcCCCEEEE
Confidence            777776542   111        135888886

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.18  E-value=0.0027  Score=63.81  Aligned_cols=91  Identities=14%  Similarity=0.202  Sum_probs=70.5

Q ss_pred             hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH
Q 012954          126 DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV  205 (452)
Q Consensus       126 ~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~  205 (452)
                      ..|. +.++..++|++.|-||-|..|++..++.|.|+|.|+++.-+..-+++++.++.      .++.++......+...
T Consensus        79 ~~L~-~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~  151 (283)
T PF01189_consen   79 LALD-PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPK  151 (283)
T ss_dssp             HHHT-TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHH
T ss_pred             cccc-ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeecccccccc
Confidence            3455 56899999999999999999999998889999999999999999999988764      2566665444444322


Q ss_pred             HhhhcccccccCccEEEEccCCCcc
Q 012954          206 LGQIDENILRSGVDAILMDLGMSSM  230 (452)
Q Consensus       206 L~~~~~~l~~~~VDGILfDLGvSS~  230 (452)
                      ..       ...+|.||.|-=+|..
T Consensus       152 ~~-------~~~fd~VlvDaPCSg~  169 (283)
T PF01189_consen  152 KP-------ESKFDRVLVDAPCSGL  169 (283)
T ss_dssp             HH-------TTTEEEEEEECSCCCG
T ss_pred             cc-------ccccchhhcCCCccch
Confidence            21       1259999999888864

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=97.11  E-value=0.0024  Score=63.20  Aligned_cols=92  Identities=13%  Similarity=0.222  Sum_probs=73.7

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .--++.++.+. ..+|..++|+..|.|-=+..+.+..+ .+.|+|+|+.+..|+.|++++.+.+.      ..+++++++
T Consensus        38 ~Wr~~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~------~~i~fv~~d  109 (238)
T COG2226          38 LWRRALISLLG-IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGV------QNVEFVVGD  109 (238)
T ss_pred             HHHHHHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCc------cceEEEEec
Confidence            45678888886 45899999999999988888887788 57899999999999999999887543      138889999


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCC
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ..+|+  +.       .+.+|.+.+.+|.
T Consensus       110 Ae~LP--f~-------D~sFD~vt~~fgl  129 (238)
T COG2226         110 AENLP--FP-------DNSFDAVTISFGL  129 (238)
T ss_pred             hhhCC--CC-------CCccCEEEeeehh
Confidence            88875  22       2468888887775

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.10  E-value=0.0037  Score=59.83  Aligned_cols=92  Identities=16%  Similarity=0.113  Sum_probs=69.5

Q ss_pred             cccchHHHHh-----hccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          117 IPVMLGEVLD-----VFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       117 ~PVLl~Evl~-----~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      .| |.+|-+.     .|. +.|++.++|.=.|.|.=+..+. ...+.+++||+|+|++|++.++++.+.|+.      .+
T Consensus        15 ~p-~TK~EIRal~ls~L~-~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~n   85 (187)
T COG2242          15 GP-MTKEEIRALTLSKLR-PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGV------DN   85 (187)
T ss_pred             CC-CcHHHHHHHHHHhhC-CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCC------Cc
Confidence            46 6666544     455 5799999999999999999999 655668999999999999999999999874      37


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      ++++.+.=   .++|...      ..+|.|++-=|
T Consensus        86 ~~vv~g~A---p~~L~~~------~~~daiFIGGg  111 (187)
T COG2242          86 LEVVEGDA---PEALPDL------PSPDAIFIGGG  111 (187)
T ss_pred             EEEEeccc---hHhhcCC------CCCCEEEECCC
Confidence            88777653   2344432      25888877544

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=97.09  E-value=0.0022  Score=62.75  Aligned_cols=92  Identities=16%  Similarity=0.239  Sum_probs=60.6

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      -+.+++.+. ..++..++|...|.|-=+..+++..++.++|+|+|..+..++.|+++++..+.      .++++++++..
T Consensus        36 r~~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------~~i~~v~~da~  108 (233)
T PF01209_consen   36 RRKLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------QNIEFVQGDAE  108 (233)
T ss_dssp             -SHHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------SEEEEE-BTT
T ss_pred             HHHHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------CCeeEEEcCHH
Confidence            346777775 46889999999999955666777777778899999999999999999887543      37999999998


Q ss_pred             hHHHHHhhhcccccccCccEEEEccCCC
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      +++  +.       .+.+|.|..=+|+-
T Consensus       109 ~lp--~~-------d~sfD~v~~~fglr  127 (233)
T PF01209_consen  109 DLP--FP-------DNSFDAVTCSFGLR  127 (233)
T ss_dssp             B----S--------TT-EEEEEEES-GG
T ss_pred             Hhc--CC-------CCceeEEEHHhhHH
Confidence            875  11       24799999877654

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.09  E-value=0.0034  Score=61.19  Aligned_cols=87  Identities=14%  Similarity=0.088  Sum_probs=66.0

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      .++++.+.  .++..++|.-.|.|..+..+++. +  ..|+|+|.++++++.|++++...+.     ..++++++++..+
T Consensus        35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~-g--~~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~~  104 (255)
T PRK11036         35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL-G--HQVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQD  104 (255)
T ss_pred             HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHHH
Confidence            46777774  35679999999999999888875 2  4699999999999999998876543     2368888888877


Q ss_pred             HHHHHhhhcccccccCccEEEEccC
Q 012954          202 IKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      +....        ...+|.|++...
T Consensus       105 l~~~~--------~~~fD~V~~~~v  121 (255)
T PRK11036        105 IAQHL--------ETPVDLILFHAV  121 (255)
T ss_pred             Hhhhc--------CCCCCEEEehhH
Confidence            64322        136999987533

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.07  E-value=0.0037  Score=59.62  Aligned_cols=93  Identities=18%  Similarity=0.208  Sum_probs=70.2

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      -|+..+++.+.  ..+..++|...|.|..+..+++..+.. .++|+|+++.+++.|++.+...+.      .++.+++++
T Consensus        75 ~l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d  145 (251)
T TIGR03534        75 ELVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDA-RVTAVDISPEALAVARKNAARLGL------DNVTFLQSD  145 (251)
T ss_pred             HHHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECc
Confidence            36667777774  245689999999999999999888764 699999999999999998876533      268888887


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCCCcc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGMSSM  230 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~  230 (452)
                      +...   +.       ...+|.|+.|.-|.+.
T Consensus       146 ~~~~---~~-------~~~fD~Vi~npPy~~~  167 (251)
T TIGR03534       146 WFEP---LP-------GGKFDLIVSNPPYIPE  167 (251)
T ss_pred             hhcc---Cc-------CCceeEEEECCCCCch
Confidence            6431   11       2369999997665443

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.06  E-value=0.0036  Score=65.75  Aligned_cols=93  Identities=16%  Similarity=0.205  Sum_probs=68.4

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      -.|++.+++++. ..++..++|+..|.|..+..+.+..   .+|+|+|.+++|++.|+++++..+.      .+++++++
T Consensus       278 ~~l~~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~  347 (431)
T TIGR00479       278 EKLVDRALEALE-LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAG  347 (431)
T ss_pred             HHHHHHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeC
Confidence            357788888886 4567899999999999998877653   4699999999999999998876542      37889999


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEcc
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +..+.   +....  .....+|.|++|-
T Consensus       348 d~~~~---l~~~~--~~~~~~D~vi~dP  370 (431)
T TIGR00479       348 TLETV---LPKQP--WAGQIPDVLLLDP  370 (431)
T ss_pred             CHHHH---HHHHH--hcCCCCCEEEECc
Confidence            88653   22210  0012589998654

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.04  E-value=0.016  Score=56.61  Aligned_cols=47  Identities=23%  Similarity=0.234  Sum_probs=38.1

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      .++..++|.-.|.|..+.++. +.+. .+|+|+|+|+.+++.|+++++.
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~-~~g~-~~v~giDis~~~l~~A~~n~~~  164 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAA-KLGA-KKVLAVDIDPQAVEAARENAEL  164 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHH-HcCC-CeEEEEECCHHHHHHHHHHHHH
Confidence            368899999999987776654 4544 3599999999999999987754

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=97.03  E-value=0.0038  Score=61.62  Aligned_cols=100  Identities=13%  Similarity=0.067  Sum_probs=69.6

Q ss_pred             HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH
Q 012954          123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI  202 (452)
Q Consensus       123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i  202 (452)
                      .+++.+. ..++..++|...|.|..+..+.+..++.+.|+|+|.++++++.|+++......   ....++++++++..++
T Consensus        64 ~~~~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~l  139 (261)
T PLN02233         64 MAVSWSG-AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATDL  139 (261)
T ss_pred             HHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEcccccC
Confidence            3445554 45788999999999998888887776556899999999999999876532110   0123677888877654


Q ss_pred             HHHHhhhcccccccCccEEEEccCCCccCCCCCCC
Q 012954          203 KSVLGQIDENILRSGVDAILMDLGMSSMQVNNPER  237 (452)
Q Consensus       203 ~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~R  237 (452)
                      +         +..+.+|.|++.+++.  .++++.+
T Consensus       140 p---------~~~~sfD~V~~~~~l~--~~~d~~~  163 (261)
T PLN02233        140 P---------FDDCYFDAITMGYGLR--NVVDRLK  163 (261)
T ss_pred             C---------CCCCCEeEEEEecccc--cCCCHHH
Confidence            2         1124699999887764  3455544

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.00  E-value=0.0033  Score=59.40  Aligned_cols=92  Identities=11%  Similarity=0.067  Sum_probs=68.1

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      -.|-+...+++.|. ..++..++|...|.|..|..+. ...  ++++++|+++++++.|+++++.++.      .+++++
T Consensus        62 ~~p~~~~~l~~~l~-~~~~~~VLeiG~GsG~~t~~la-~~~--~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~  131 (212)
T PRK00312         62 SQPYMVARMTELLE-LKPGDRVLEIGTGSGYQAAVLA-HLV--RRVFSVERIKTLQWEAKRRLKQLGL------HNVSVR  131 (212)
T ss_pred             CcHHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHH-HHh--CEEEEEeCCHHHHHHHHHHHHHCCC------CceEEE
Confidence            46777778888887 4688999999999998876544 433  3699999999999999999887643      257777


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      ++++.+.   +..      ...+|.|++|-.
T Consensus       132 ~~d~~~~---~~~------~~~fD~I~~~~~  153 (212)
T PRK00312        132 HGDGWKG---WPA------YAPFDRILVTAA  153 (212)
T ss_pred             ECCcccC---CCc------CCCcCEEEEccC
Confidence            7775431   111      136999998753

>PRK14967 putative methyltransferase; Provisional

Probab=96.97  E-value=0.0062  Score=58.27  Aligned_cols=93  Identities=13%  Similarity=0.065  Sum_probs=67.1

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      +.++-+++..+. ..++..++|.-.|.|.-+..+... +. ++++|+|+++.+++.|+++++..+.       ++.++++
T Consensus        22 s~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~-~~-~~v~~vD~s~~~l~~a~~n~~~~~~-------~~~~~~~   91 (223)
T PRK14967         22 TQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAA-GA-GSVTAVDISRRAVRSARLNALLAGV-------DVDVRRG   91 (223)
T ss_pred             HHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHhCC-------eeEEEEC
Confidence            345667777665 357889999999999877776653 43 4799999999999999988765432       5677777


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEccCCCcc
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDLGMSSM  230 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~  230 (452)
                      ++..   .+.       ...+|.|+.|.+|...
T Consensus        92 d~~~---~~~-------~~~fD~Vi~npPy~~~  114 (223)
T PRK14967         92 DWAR---AVE-------FRPFDVVVSNPPYVPA  114 (223)
T ss_pred             chhh---hcc-------CCCeeEEEECCCCCCC
Confidence            6643   222       2369999998876543

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=96.97  E-value=0.0032  Score=62.55  Aligned_cols=106  Identities=14%  Similarity=0.144  Sum_probs=74.1

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      +|-=+.=++..|. ..||..+|+|=-|.|.=|.+|+..+++.|+|+.||..++-.+.|++.++.++.     ..++++.|
T Consensus        25 YpkD~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~   98 (247)
T PF08704_consen   25 YPKDISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHH   98 (247)
T ss_dssp             -HHHHHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEE
T ss_pred             eCchHHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEe
Confidence            3333555777886 57999999999999999999999987789999999999999999999998875     24788888


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEccCCCccCCCC
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN  234 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd  234 (452)
                      .+..+-  -..+ +  + ...+|+|++||.=.-.-|+.
T Consensus        99 ~Dv~~~--g~~~-~--~-~~~~DavfLDlp~Pw~~i~~  130 (247)
T PF08704_consen   99 RDVCEE--GFDE-E--L-ESDFDAVFLDLPDPWEAIPH  130 (247)
T ss_dssp             S-GGCG----ST-T----TTSEEEEEEESSSGGGGHHH
T ss_pred             cceecc--cccc-c--c-cCcccEEEEeCCCHHHHHHH
Confidence            776421  0111 0  0 14699999999755544443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=96.96  E-value=0.0042  Score=62.85  Aligned_cols=87  Identities=15%  Similarity=0.106  Sum_probs=65.5

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      |++.+.+++.. .++..++|+-.|.|..+..+.+.  . ..|+|+|.++.|++.|++..+..+.      .++++++++.
T Consensus       161 l~~~v~~~l~~-~~~~~VLDl~cG~G~~sl~la~~--~-~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~  230 (315)
T PRK03522        161 LYATARDWVRE-LPPRSMWDLFCGVGGFGLHCATP--G-MQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDS  230 (315)
T ss_pred             HHHHHHHHHHh-cCCCEEEEccCCCCHHHHHHHhc--C-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCH
Confidence            66667777752 35689999999999999888873  2 4699999999999999998876542      2688888887


Q ss_pred             chHHHHHhhhcccccccCccEEEEc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ..+.   ...     ...+|.|++|
T Consensus       231 ~~~~---~~~-----~~~~D~Vv~d  247 (315)
T PRK03522        231 TQFA---TAQ-----GEVPDLVLVN  247 (315)
T ss_pred             HHHH---Hhc-----CCCCeEEEEC
Confidence            6543   211     1258999988

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=96.95  E-value=0.0053  Score=57.72  Aligned_cols=81  Identities=9%  Similarity=0.192  Sum_probs=63.8

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ....++|.-+|.|..+..+++..|+. .++|+|+++.+++.|++++...+.      .++.+++++...+...+..    
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~-~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~~~~----   84 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDK-NFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDKFFP----   84 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCC-CEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHhhCC----
Confidence            45799999999999999999988874 699999999999999988776533      2788999988765432211    


Q ss_pred             ccccCccEEEEccC
Q 012954          213 ILRSGVDAILMDLG  226 (452)
Q Consensus       213 l~~~~VDGILfDLG  226 (452)
                        ...+|.|++++.
T Consensus        85 --~~~~d~v~~~~p   96 (194)
T TIGR00091        85 --DGSLSKVFLNFP   96 (194)
T ss_pred             --CCceeEEEEECC
Confidence              136999998854

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK08317 hypothetical protein; Provisional

Probab=96.92  E-value=0.0053  Score=57.19  Aligned_cols=92  Identities=13%  Similarity=0.158  Sum_probs=66.1

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +.+.+++.+. ..++..++|...|.|..+..+.+.+++.++++|+|.++..++.++++....       ..++.++..++
T Consensus         7 ~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~   78 (241)
T PRK08317          7 YRARTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDA   78 (241)
T ss_pred             HHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEeccc
Confidence            4456677776 467889999999999999999988755568999999999999998873321       12566666666


Q ss_pred             chHHHHHhhhcccccccCccEEEEccCCC
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      ..+.  +       ....+|.|+.+..+.
T Consensus        79 ~~~~--~-------~~~~~D~v~~~~~~~   98 (241)
T PRK08317         79 DGLP--F-------PDGSFDAVRSDRVLQ   98 (241)
T ss_pred             ccCC--C-------CCCCceEEEEechhh
Confidence            5432  1       123688888775543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=96.91  E-value=0.0048  Score=57.91  Aligned_cols=96  Identities=17%  Similarity=0.178  Sum_probs=71.4

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      +......+++..+. ..++..++|...|.|..+..+++.++...+++++|.++.+++.+++++...+.     ..++.++
T Consensus        35 ~~~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~  108 (239)
T PRK00216         35 LHRVWRRKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFV  108 (239)
T ss_pred             CcHHHHHHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEE
Confidence            44566778888886 45778999999999999999999887446799999999999999988754321     1257777


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      ..++.++.     .    ....+|.|++..+
T Consensus       109 ~~d~~~~~-----~----~~~~~D~I~~~~~  130 (239)
T PRK00216        109 QGDAEALP-----F----PDNSFDAVTIAFG  130 (239)
T ss_pred             ecccccCC-----C----CCCCccEEEEecc
Confidence            77776542     1    1236898876543

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=96.91  E-value=0.0041  Score=59.60  Aligned_cols=85  Identities=19%  Similarity=0.264  Sum_probs=60.4

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      +.|+.+.+...+++..++|.-.|.|+.+..+++..+..++|+|+|+++.         ...        .+++++++++.
T Consensus        39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~~~--------~~v~~i~~D~~  101 (209)
T PRK11188         39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------DPI--------VGVDFLQGDFR  101 (209)
T ss_pred             hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------cCC--------CCcEEEecCCC
Confidence            4555555543357889999999999999999999877678999999981         111        24788899988


Q ss_pred             hH---HHHHhhhcccccccCccEEEEccC
Q 012954          201 HI---KSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       201 ~i---~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      +.   .+++....    ...+|.|+-|+.
T Consensus       102 ~~~~~~~i~~~~~----~~~~D~V~S~~~  126 (209)
T PRK11188        102 DELVLKALLERVG----DSKVQVVMSDMA  126 (209)
T ss_pred             ChHHHHHHHHHhC----CCCCCEEecCCC
Confidence            74   33333322    246888887753

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.89  E-value=0.0027  Score=65.74  Aligned_cols=110  Identities=21%  Similarity=0.285  Sum_probs=83.2

Q ss_pred             CCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCC-CCEEEEEeCCHHHHHHHHHHHhh
Q 012954          102 DYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPE-LKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       102 ~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~-~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      +|..|.+..|+...-+|+      ..|. ++||..++|++.+-||=|..|++...+ .+.|+|+|+|+.=+...+++++.
T Consensus       132 ~~~~G~~~vQd~sS~l~a------~~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R  204 (355)
T COG0144         132 EFAEGLIYVQDEASQLPA------LVLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR  204 (355)
T ss_pred             hhhceEEEEcCHHHHHHH------HHcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH
Confidence            777777777776665555      4555 679999999999999999999999876 44459999999999999999988


Q ss_pred             hccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCcc
Q 012954          181 LLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSM  230 (452)
Q Consensus       181 ~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~  230 (452)
                      .+.      .++.+++..-+.+.......      ..+|-||+|==+|+.
T Consensus       205 lG~------~nv~~~~~d~~~~~~~~~~~------~~fD~iLlDaPCSg~  242 (355)
T COG0144         205 LGV------RNVIVVNKDARRLAELLPGG------EKFDRILLDAPCSGT  242 (355)
T ss_pred             cCC------CceEEEeccccccccccccc------CcCcEEEECCCCCCC
Confidence            865      25666666655544333211      249999999888863

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=96.86  E-value=0.0064  Score=64.12  Aligned_cols=95  Identities=17%  Similarity=0.315  Sum_probs=73.3

Q ss_pred             ccccchH--HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954          116 HIPVMLG--EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       116 H~PVLl~--Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      ..+.+++  ++++.+.. ..+.++||.-+|.|.++..+....|+. .++|+|+++.+++.|.++....+.      .++.
T Consensus       104 ~~~~~~d~~~~~~~~~~-~~~p~vLEIGcGsG~~ll~lA~~~P~~-~~iGIEI~~~~i~~a~~ka~~~gL------~NV~  175 (390)
T PRK14121        104 KKPYILDIDNFLDFISK-NQEKILIEIGFGSGRHLLYQAKNNPNK-LFIGIEIHTPSIEQVLKQIELLNL------KNLL  175 (390)
T ss_pred             cccccCCHHHHHHHhcC-CCCCeEEEEcCcccHHHHHHHHhCCCC-CEEEEECCHHHHHHHHHHHHHcCC------CcEE
Confidence            4444565  67888863 467799999999999999999999875 599999999999999888766543      3688


Q ss_pred             EEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          194 TFAKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       194 li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +++++-..+...+.       .+.+|.|.+.+
T Consensus       176 ~i~~DA~~ll~~~~-------~~s~D~I~lnF  200 (390)
T PRK14121        176 IINYDARLLLELLP-------SNSVEKIFVHF  200 (390)
T ss_pred             EEECCHHHhhhhCC-------CCceeEEEEeC
Confidence            88888665544333       24699998764

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=96.84  E-value=0.0064  Score=55.64  Aligned_cols=86  Identities=8%  Similarity=0.149  Sum_probs=66.1

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ++.+++.+. ..++..++|.=.|.|..+..+++.   .++|+|+|+|+.+++.+++++...        .+++++++++.
T Consensus         2 ~~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~--------~~v~ii~~D~~   69 (169)
T smart00650        2 IDKIVRAAN-LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAA--------DNLTVIHGDAL   69 (169)
T ss_pred             HHHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccC--------CCEEEEECchh
Confidence            567788886 457889999999999999999987   246999999999999998877531        26888888886


Q ss_pred             hHHHHHhhhcccccccCccEEEEccCC
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ++.  +.       ...+|.|+.|+=|
T Consensus        70 ~~~--~~-------~~~~d~vi~n~Py   87 (169)
T smart00650       70 KFD--LP-------KLQPYKVVGNLPY   87 (169)
T ss_pred             cCC--cc-------ccCCCEEEECCCc
Confidence            542  11       1247888887655

>KOG2730 consensus Methylase [General function prediction only]

Probab=96.82  E-value=0.0015  Score=64.27  Aligned_cols=98  Identities=18%  Similarity=0.213  Sum_probs=67.9

Q ss_pred             CCchhhhhhcCCCC-ccccchHHHHhhccCC-CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHh
Q 012954          102 DYDYESIIQQQQSS-HIPVMLGEVLDVFSSS-RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLN  179 (452)
Q Consensus       102 ~~~~~~~~~~~~~~-H~PVLl~Evl~~L~~~-~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~  179 (452)
                      -||.+-+++.+.-. -.|-=+.|.|...... .....+||+-+|.||.+..+..+.+   .||++|+||.=|+-|+++++
T Consensus        61 rfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNae  137 (263)
T KOG2730|consen   61 RFDSGIYMDREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAE  137 (263)
T ss_pred             hhccceeecccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccce
Confidence            35656555544332 2232333333322210 0235789999999999998887765   48999999999999999999


Q ss_pred             hhccCCCCCCceEEEEccCcchHHHHHh
Q 012954          180 SLLHGQAHPHLKTHTFAKNFRHIKSVLG  207 (452)
Q Consensus       180 ~~~~~~~~~~~r~~li~~nF~~i~~~L~  207 (452)
                      -||-.     +|++|++++|-.+.+-|+
T Consensus       138 iYGI~-----~rItFI~GD~ld~~~~lq  160 (263)
T KOG2730|consen  138 VYGVP-----DRITFICGDFLDLASKLK  160 (263)
T ss_pred             eecCC-----ceeEEEechHHHHHHHHh
Confidence            99863     499999999987765554

>TIGR00740 methyltransferase, putative

Probab=96.75  E-value=0.009  Score=57.51  Aligned_cols=66  Identities=14%  Similarity=0.219  Sum_probs=53.5

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHP-ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI  202 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p-~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i  202 (452)
                      .++..++|.-.|.|..+..+++.++ +...++|+|.++.+++.|+++++.+..     ..+++++++++..+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~~~  118 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRHV  118 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChhhC
Confidence            3678999999999999999998753 346799999999999999999877643     23678888887654

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=96.71  E-value=0.0067  Score=59.10  Aligned_cols=80  Identities=13%  Similarity=0.221  Sum_probs=60.1

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      .++..++|.-.|.|..+..+++.+ .+..+++|+|.++.+++.|+++++.++.     ..+++++++++..+.       
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~~~~-------  122 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRDIA-------  122 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChhhCC-------
Confidence            367899999999999998888753 2346799999999999999999877543     236788887765431       


Q ss_pred             ccccccCccEEEEccCC
Q 012954          211 ENILRSGVDAILMDLGM  227 (452)
Q Consensus       211 ~~l~~~~VDGILfDLGv  227 (452)
                          ...+|.|++.+.+
T Consensus       123 ----~~~~D~vv~~~~l  135 (247)
T PRK15451        123 ----IENASMVVLNFTL  135 (247)
T ss_pred             ----CCCCCEEehhhHH
Confidence                1247888876543

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=96.71  E-value=0.0077  Score=62.62  Aligned_cols=87  Identities=14%  Similarity=0.113  Sum_probs=64.1

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      |++.+.+++. ..++..++|+-.|.|..+..++...   ..|+|+|+|+.|++.|+++.+..+.      .+++++++++
T Consensus       221 l~~~~~~~l~-~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~------~~~~~~~~d~  290 (374)
T TIGR02085       221 LYATARQWVR-EIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGL------DNLSFAALDS  290 (374)
T ss_pred             HHHHHHHHHH-hcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCH
Confidence            5566666664 2356899999999999998888542   4699999999999999998876532      2688888887


Q ss_pred             chHHHHHhhhcccccccCccEEEEc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ....   ...     ...+|.|++|
T Consensus       291 ~~~~---~~~-----~~~~D~vi~D  307 (374)
T TIGR02085       291 AKFA---TAQ-----MSAPELVLVN  307 (374)
T ss_pred             HHHH---Hhc-----CCCCCEEEEC
Confidence            6542   211     1248999998

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=96.71  E-value=0.0067  Score=59.75  Aligned_cols=93  Identities=19%  Similarity=0.214  Sum_probs=65.3

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .|++++++.+....+...++|.-.|.|.=+..+++..+.. .++|+|+|+.|++.|+++++..+         .++++++
T Consensus        72 ~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~-~v~~vDis~~al~~A~~N~~~~~---------~~~~~~D  141 (251)
T TIGR03704        72 FLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGI-ELHAADIDPAAVRCARRNLADAG---------GTVHEGD  141 (251)
T ss_pred             HHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcC---------CEEEEee
Confidence            5888888877522233589999999999999999887763 69999999999999999876531         2456665


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      +.+   .+...    ....+|.|++|-=|.
T Consensus       142 ~~~---~l~~~----~~~~fDlVv~NPPy~  164 (251)
T TIGR03704       142 LYD---ALPTA----LRGRVDILAANAPYV  164 (251)
T ss_pred             chh---hcchh----cCCCEeEEEECCCCC
Confidence            432   11110    012588888886553

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=96.69  E-value=0.01  Score=56.97  Aligned_cols=91  Identities=11%  Similarity=0.112  Sum_probs=64.2

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +...++++|....++..++|+-.|.|.=+.+.|....  ..|+++|+|+.|++.+++.++..+.      .++.+++++.
T Consensus        40 v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D~  111 (199)
T PRK10909         40 VRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTNA  111 (199)
T ss_pred             HHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEchH
Confidence            3455677774324678999999999988877776642  4799999999999999998877643      2678888776


Q ss_pred             chHHHHHhhhcccccccCccEEEEccC
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      .+   .+....     ..+|.|++|==
T Consensus       112 ~~---~l~~~~-----~~fDlV~~DPP  130 (199)
T PRK10909        112 LS---FLAQPG-----TPHNVVFVDPP  130 (199)
T ss_pred             HH---HHhhcC-----CCceEEEECCC
Confidence            43   232211     24888886643

>PLN02244 tocopherol O-methyltransferase

Probab=96.59  E-value=0.012  Score=60.44  Aligned_cols=98  Identities=17%  Similarity=0.104  Sum_probs=71.1

Q ss_pred             chHHHHhhccCC----CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          120 MLGEVLDVFSSS----RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       120 Ll~Evl~~L~~~----~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      |++++++.+...    .++..++|.-+|.|+.+..+.++++  ..|+|+|+++.+++.|+++.+..+.     ..+++++
T Consensus       101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~  173 (340)
T PLN02244        101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGL-----SDKVSFQ  173 (340)
T ss_pred             HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEE
Confidence            788999988631    4678999999999999988888773  4699999999999999987765432     2367777


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCC
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP  235 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~  235 (452)
                      .++..++.  +       ..+.+|.|+...  +.+++.+.
T Consensus       174 ~~D~~~~~--~-------~~~~FD~V~s~~--~~~h~~d~  202 (340)
T PLN02244        174 VADALNQP--F-------EDGQFDLVWSME--SGEHMPDK  202 (340)
T ss_pred             EcCcccCC--C-------CCCCccEEEECC--chhccCCH
Confidence            77765531  1       124689888743  33455444

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=96.57  E-value=0.011  Score=58.33  Aligned_cols=93  Identities=8%  Similarity=0.097  Sum_probs=74.2

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      .++-+-|=+++.+++.+. ..++..++|.-.|.|..|..+++..   ..|+|+|+|+.+++.+++++...        .+
T Consensus         9 Qnfl~d~~~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~--------~~   76 (258)
T PRK14896          9 QHFLIDDRVVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAA--------GN   76 (258)
T ss_pred             ccccCCHHHHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccC--------CC
Confidence            566677888999999986 4578999999999999999999872   46999999999999998876541        26


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ++++++++..++     .      ..+|.|+.||=|
T Consensus        77 v~ii~~D~~~~~-----~------~~~d~Vv~NlPy  101 (258)
T PRK14896         77 VEIIEGDALKVD-----L------PEFNKVVSNLPY  101 (258)
T ss_pred             EEEEEeccccCC-----c------hhceEEEEcCCc
Confidence            888888876542     1      136788888776

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=96.56  E-value=0.011  Score=45.95  Aligned_cols=78  Identities=22%  Similarity=0.295  Sum_probs=57.2

Q ss_pred             EEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccccc
Q 012954          137 FVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRS  216 (452)
Q Consensus       137 yVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~  216 (452)
                      ++|...|.|+.+..+++ .+ ...++++|.++.++..+++......      ..+..+++.++.+...   .     ...
T Consensus         2 ildig~G~G~~~~~~~~-~~-~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~-----~~~   65 (107)
T cd02440           2 VLDLGCGTGALALALAS-GP-GARVTGVDISPVALELARKAAAALL------ADNVEVLKGDAEELPP---E-----ADE   65 (107)
T ss_pred             eEEEcCCccHHHHHHhc-CC-CCEEEEEeCCHHHHHHHHHHHhccc------ccceEEEEcChhhhcc---c-----cCC
Confidence            68999999999999987 33 3579999999999999885333221      2367788888776532   1     124


Q ss_pred             CccEEEEccCCCcc
Q 012954          217 GVDAILMDLGMSSM  230 (452)
Q Consensus       217 ~VDGILfDLGvSS~  230 (452)
                      ++|.|+.+..+..+
T Consensus        66 ~~d~i~~~~~~~~~   79 (107)
T cd02440          66 SFDVIISDPPLHHL   79 (107)
T ss_pred             ceEEEEEccceeeh
Confidence            69999998887654

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=96.51  E-value=0.008  Score=59.70  Aligned_cols=93  Identities=8%  Similarity=0.089  Sum_probs=70.8

Q ss_pred             CCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceE
Q 012954          113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKT  192 (452)
Q Consensus       113 ~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~  192 (452)
                      ++.+-+-+++.+++.+. ..++..++|.-.|.|..|..++++.+   +|+|+|+|+.+++.+++++..         .++
T Consensus        23 ~fl~~~~i~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~---------~~v   89 (272)
T PRK00274         23 NFLIDENILDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE---------DNL   89 (272)
T ss_pred             CcCCCHHHHHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc---------Cce
Confidence            45566678899999986 46888999999999999999998853   599999999999999876532         268


Q ss_pred             EEEccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          193 HTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       193 ~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +++++++..++  +.+.       ..+.|+.|+-|
T Consensus        90 ~~i~~D~~~~~--~~~~-------~~~~vv~NlPY  115 (272)
T PRK00274         90 TIIEGDALKVD--LSEL-------QPLKVVANLPY  115 (272)
T ss_pred             EEEEChhhcCC--HHHc-------CcceEEEeCCc
Confidence            88898887642  1110       14667777665

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=96.51  E-value=0.012  Score=56.91  Aligned_cols=86  Identities=17%  Similarity=0.246  Sum_probs=64.1

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      .-...++++.+. ..++..++|.-.|.|..+..+.+.++. +.|+|+|.++.+++.|++++.           ++.++.+
T Consensus        17 ~~~~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~   83 (258)
T PRK01683         17 TRPARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPA-ARITGIDSSPAMLAEARSRLP-----------DCQFVEA   83 (258)
T ss_pred             hcHHHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhCC-----------CCeEEEC
Confidence            335778888886 457889999999999999988888866 479999999999999987642           3455566


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEccC
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      +...+   ..       ...+|.|+.+..
T Consensus        84 d~~~~---~~-------~~~fD~v~~~~~  102 (258)
T PRK01683         84 DIASW---QP-------PQALDLIFANAS  102 (258)
T ss_pred             chhcc---CC-------CCCccEEEEccC
Confidence            55432   11       136888887753

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=96.49  E-value=0.012  Score=58.74  Aligned_cols=90  Identities=14%  Similarity=0.154  Sum_probs=70.5

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ..-++..+. ..||..++|+=.|.|-=|..|+...++.|+|+.+|++++-.+.|+++|+.++.     .+++++..++..
T Consensus        83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----~d~v~~~~~Dv~  156 (256)
T COG2519          83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----GDRVTLKLGDVR  156 (256)
T ss_pred             HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----ccceEEEecccc
Confidence            444567776 57999999999999999999998888889999999999999999999999865     235666654443


Q ss_pred             hHHHHHhhhcccccccCccEEEEccC
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      +   ...       ...||+|++|+.
T Consensus       157 ~---~~~-------~~~vDav~LDmp  172 (256)
T COG2519         157 E---GID-------EEDVDAVFLDLP  172 (256)
T ss_pred             c---ccc-------ccccCEEEEcCC
Confidence            2   222       236999999874

>PTZ00146 fibrillarin; Provisional

Probab=96.45  E-value=0.014  Score=59.39  Aligned_cols=81  Identities=9%  Similarity=-0.036  Sum_probs=56.7

Q ss_pred             CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          131 SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       131 ~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      .+++..++|+-.|.|+-|..+++..++.++|||+|.++.+++...+..+.        ..++.++..+..+-..+-..  
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--------r~NI~~I~~Da~~p~~y~~~--  199 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--------RPNIVPIIEDARYPQKYRML--  199 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCCEEEECCccChhhhhcc--
Confidence            46889999999999999999998888778999999998765433332211        12566777776542222111  


Q ss_pred             ccccccCccEEEEcc
Q 012954          211 ENILRSGVDAILMDL  225 (452)
Q Consensus       211 ~~l~~~~VDGILfDL  225 (452)
                          ...||.|+.|.
T Consensus       200 ----~~~vDvV~~Dv  210 (293)
T PTZ00146        200 ----VPMVDVIFADV  210 (293)
T ss_pred             ----cCCCCEEEEeC
Confidence                13699999998

>PRK11524 putative methyltransferase; Provisional

Probab=96.45  E-value=0.0069  Score=60.51  Aligned_cols=63  Identities=13%  Similarity=0.233  Sum_probs=52.9

Q ss_pred             CCCCcccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          112 QQSSHIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       112 ~~~~H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      .|..-.|| |+..+|..+.  .+|++++|.-+|.|  |+++... ++  .+.||||+|++.++.|++||+.
T Consensus       188 ~HPt~kP~~L~erlI~~~S--~~GD~VLDPF~GSG--TT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        188 NHPTQKPEALLKRIILASS--NPGDIVLDPFAGSF--TTGAVAKASG--RKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             cCcccChHHHHHHHHHHhC--CCCCEEEECCCCCc--HHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence            46667888 9999999996  58999999999999  6666554 43  4689999999999999999865

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.44  E-value=0.019  Score=55.75  Aligned_cols=93  Identities=17%  Similarity=0.189  Sum_probs=67.3

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .|++.+++.+. ..++..++|...|.|.-+..++...+. ..++|+|+++.+++.|++++. ...     ..++.+++++
T Consensus        95 ~l~~~~~~~~~-~~~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~-~~~-----~~~i~~~~~d  166 (275)
T PRK09328         95 ELVEWALEALL-LKEPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAK-HGL-----GARVEFLQGD  166 (275)
T ss_pred             HHHHHHHHhcc-ccCCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHH-hCC-----CCcEEEEEcc
Confidence            34555555554 346779999999999999999988876 479999999999999999876 111     2367788877


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      +-.-   +.       ...+|.|+.|.-|.+
T Consensus       167 ~~~~---~~-------~~~fD~Iv~npPy~~  187 (275)
T PRK09328        167 WFEP---LP-------GGRFDLIVSNPPYIP  187 (275)
T ss_pred             ccCc---CC-------CCceeEEEECCCcCC
Confidence            6211   11       136999999876654

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=96.44  E-value=0.018  Score=54.67  Aligned_cols=74  Identities=14%  Similarity=0.077  Sum_probs=54.2

Q ss_pred             chHHHHhhccC-CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          120 MLGEVLDVFSS-SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       120 Ll~Evl~~L~~-~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      +...+++.|.. ..++..++|.-+|.|..+..+++. +  .+|+|+|+++++++.|++++.....     ..++.+.+.+
T Consensus        41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~--~~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d  112 (219)
T TIGR02021        41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-G--AIVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVND  112 (219)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECC
Confidence            44556667651 236789999999999989888764 2  3699999999999999998765422     1256666666


Q ss_pred             cch
Q 012954          199 FRH  201 (452)
Q Consensus       199 F~~  201 (452)
                      +.+
T Consensus       113 ~~~  115 (219)
T TIGR02021       113 LLS  115 (219)
T ss_pred             hhh
Confidence            554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=96.42  E-value=0.017  Score=57.58  Aligned_cols=75  Identities=21%  Similarity=0.262  Sum_probs=57.3

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .|+..+++.+....+...++|...|.|.-+..++...++ .+++|+|+++.|++.|+++.+.++.     ..++.+++++
T Consensus       100 ~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~-----~~~v~~~~~d  173 (284)
T TIGR00536       100 ELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQL-----EHRVEFIQSN  173 (284)
T ss_pred             HHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECc
Confidence            367777776642223368999999999999999988876 4699999999999999998776543     1257777776


Q ss_pred             c
Q 012954          199 F  199 (452)
Q Consensus       199 F  199 (452)
                      +
T Consensus       174 ~  174 (284)
T TIGR00536       174 L  174 (284)
T ss_pred             h
Confidence            5

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PLN02476 O-methyltransferase

Probab=96.41  E-value=0.025  Score=57.24  Aligned_cols=101  Identities=13%  Similarity=0.027  Sum_probs=71.5

Q ss_pred             cccchHHHHh---hccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954          117 IPVMLGEVLD---VFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       117 ~PVLl~Evl~---~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      .|++-.+..+   .|........+++.--|.|.=|..++..+++.++|+++|.|++..+.|++.++.++..     .+++
T Consensus        99 ~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-----~~I~  173 (278)
T PLN02476         99 QMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-----HKVN  173 (278)
T ss_pred             ccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEE
Confidence            3443444444   3332235689999999999777777777887789999999999999999999988752     4889


Q ss_pred             EEccCcchH-HHHHhhhcccccccCccEEEEccC
Q 012954          194 TFAKNFRHI-KSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       194 li~~nF~~i-~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      ++.+...+. .++..+ +   ....+|.|++|--
T Consensus       174 li~GdA~e~L~~l~~~-~---~~~~FD~VFIDa~  203 (278)
T PLN02476        174 VKHGLAAESLKSMIQN-G---EGSSYDFAFVDAD  203 (278)
T ss_pred             EEEcCHHHHHHHHHhc-c---cCCCCCEEEECCC
Confidence            988876543 222211 1   0236999999953

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.36  E-value=0.014  Score=62.31  Aligned_cols=97  Identities=12%  Similarity=0.120  Sum_probs=72.1

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      .+..=..+|+..+++++. ..++..++|+.+|.|.-|..+..+   ..+|+|+++.++|++.|++..+..+.      .+
T Consensus       273 ~N~~~~ekl~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i------~N  342 (432)
T COG2265         273 VNPAVAEKLYETALEWLE-LAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGI------DN  342 (432)
T ss_pred             cCHHHHHHHHHHHHHHHh-hcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCC------Cc
Confidence            344455679999999997 457789999999999999888854   35699999999999999998776543      35


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEEc
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ++++.+.=..+.....+      ...+|.||+|
T Consensus       343 ~~f~~~~ae~~~~~~~~------~~~~d~VvvD  369 (432)
T COG2265         343 VEFIAGDAEEFTPAWWE------GYKPDVVVVD  369 (432)
T ss_pred             EEEEeCCHHHHhhhccc------cCCCCEEEEC
Confidence            77776654443322211      1368999986

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.36  E-value=0.016  Score=55.95  Aligned_cols=84  Identities=27%  Similarity=0.337  Sum_probs=57.9

Q ss_pred             CCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .|..++|+-+|.|  ..+|-.. ++. .+|+|+|+|++|++.++++.++++       .++.++.++-+.+         
T Consensus        45 ~g~~V~DlG~GTG--~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~-------g~v~f~~~dv~~~---------  105 (198)
T COG2263          45 EGKTVLDLGAGTG--ILAIGAALLGA-SRVLAVDIDPEALEIARANAEELL-------GDVEFVVADVSDF---------  105 (198)
T ss_pred             CCCEEEEcCCCcC--HHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhC-------CceEEEEcchhhc---------
Confidence            6778999999999  4445444 454 479999999999999999887743       3677777766554         


Q ss_pred             cccccCccEEEEccCCCccCCCCCCCCc
Q 012954          212 NILRSGVDAILMDLGMSSMQVNNPERGF  239 (452)
Q Consensus       212 ~l~~~~VDGILfDLGvSS~QLDd~~RGF  239 (452)
                         ...+|-+++|==+-+ |..-++|=|
T Consensus       106 ---~~~~dtvimNPPFG~-~~rhaDr~F  129 (198)
T COG2263         106 ---RGKFDTVIMNPPFGS-QRRHADRPF  129 (198)
T ss_pred             ---CCccceEEECCCCcc-ccccCCHHH
Confidence               246888887732222 444444433

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=96.35  E-value=0.014  Score=62.29  Aligned_cols=87  Identities=16%  Similarity=0.208  Sum_probs=63.9

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .|++.+++.+.   +++.++|...|.|-.+..++...+. ..++|+|+++.|++.|+++++..+       .++++++++
T Consensus       240 ~LVe~aL~~l~---~~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g-------~rV~fi~gD  308 (423)
T PRK14966        240 HLVEAVLARLP---ENGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLG-------ARVEFAHGS  308 (423)
T ss_pred             HHHHHhhhccC---CCCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC-------CcEEEEEcc
Confidence            35555665553   4579999999999999888887776 469999999999999999887653       267888887


Q ss_pred             cchHHHHHhhhcccccccCccEEEEc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      +.+..  +..      ...+|.|+.|
T Consensus       309 l~e~~--l~~------~~~FDLIVSN  326 (423)
T PRK14966        309 WFDTD--MPS------EGKWDIIVSN  326 (423)
T ss_pred             hhccc--ccc------CCCccEEEEC
Confidence            63311  111      1258888886

>PRK04266 fibrillarin; Provisional

Probab=96.35  E-value=0.027  Score=54.99  Aligned_cols=74  Identities=8%  Similarity=0.054  Sum_probs=53.7

Q ss_pred             ccchHHHHh---hccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE
Q 012954          118 PVMLGEVLD---VFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT  194 (452)
Q Consensus       118 PVLl~Evl~---~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l  194 (452)
                      +=+...++.   .+. .+++..++|.-.|.|+-+..+.+..+ .++|||+|+++.+++...++.+..        .++.+
T Consensus        55 ~~~~~~ll~~~~~l~-i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--------~nv~~  124 (226)
T PRK04266         55 SKLAAAILKGLKNFP-IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--------KNIIP  124 (226)
T ss_pred             cchHHHHHhhHhhCC-CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--------CCcEE
Confidence            334444444   454 56889999999999999988888787 578999999999998766554332        25666


Q ss_pred             EccCcch
Q 012954          195 FAKNFRH  201 (452)
Q Consensus       195 i~~nF~~  201 (452)
                      ++++..+
T Consensus       125 i~~D~~~  131 (226)
T PRK04266        125 ILADARK  131 (226)
T ss_pred             EECCCCC
Confidence            7666543

>PRK10742 putative methyltransferase; Provisional

Probab=96.34  E-value=0.023  Score=56.79  Aligned_cols=94  Identities=12%  Similarity=0.015  Sum_probs=63.0

Q ss_pred             HHhhccCCCCCC--EEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCC---ceEEEEccC
Q 012954          124 VLDVFSSSRTIT--SFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPH---LKTHTFAKN  198 (452)
Q Consensus       124 vl~~L~~~~~gg--iyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~---~r~~li~~n  198 (452)
                      ++++.- .+++.  .++|||+|.|..+..+++.   ++.|++++++|.+....++.|+....+.+...   .|+++++++
T Consensus        78 l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d  153 (250)
T PRK10742         78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (250)
T ss_pred             HHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence            345554 34565  8999999999888777765   24599999999999988887776311111111   378888877


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      ...   +|....     ..+|.|.+|==|.-
T Consensus       154 a~~---~L~~~~-----~~fDVVYlDPMfp~  176 (250)
T PRK10742        154 SLT---ALTDIT-----PRPQVVYLDPMFPH  176 (250)
T ss_pred             HHH---HHhhCC-----CCCcEEEECCCCCC
Confidence            543   444332     25999999865543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=96.34  E-value=0.016  Score=56.73  Aligned_cols=80  Identities=21%  Similarity=0.174  Sum_probs=58.7

Q ss_pred             CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          131 SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       131 ~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      ..++..++|.-.|.|.-+..++...+..++|+|+|+++.+++.|+++.+.++.      .++.++++++..+.  +    
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~l~--~----  142 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEALP--V----  142 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhhCC--C----
Confidence            35789999999999755655665566666899999999999999998776543      26777777765432  1    


Q ss_pred             ccccccCccEEEEcc
Q 012954          211 ENILRSGVDAILMDL  225 (452)
Q Consensus       211 ~~l~~~~VDGILfDL  225 (452)
                         ....+|.|+.+.
T Consensus       143 ---~~~~fD~Vi~~~  154 (272)
T PRK11873        143 ---ADNSVDVIISNC  154 (272)
T ss_pred             ---CCCceeEEEEcC
Confidence               123689888774

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=96.27  E-value=0.015  Score=59.04  Aligned_cols=96  Identities=15%  Similarity=0.113  Sum_probs=71.7

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      +|-=+.-+++.|. ..||.++|.+--|.|+=|.+|+....+.|+||.||.+..--+.|.+.++..+-     ..++++.|
T Consensus        90 Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----~~~vt~~h  163 (314)
T KOG2915|consen   90 YTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----GDNVTVTH  163 (314)
T ss_pred             ecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----CcceEEEE
Confidence            3333677889997 57999999999999999999999999999999999998877777766665543     23677766


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      .+-..---.++       ...+|+|.+||
T Consensus       164 rDVc~~GF~~k-------s~~aDaVFLDl  185 (314)
T KOG2915|consen  164 RDVCGSGFLIK-------SLKADAVFLDL  185 (314)
T ss_pred             eecccCCcccc-------ccccceEEEcC
Confidence            55433211111       24689999987

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=96.25  E-value=0.039  Score=54.13  Aligned_cols=110  Identities=12%  Similarity=0.098  Sum_probs=78.6

Q ss_pred             hhcCCCCccccchHHHHhhcc---CCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCC
Q 012954          109 IQQQQSSHIPVMLGEVLDVFS---SSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQ  185 (452)
Q Consensus       109 ~~~~~~~H~PVLl~Evl~~L~---~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~  185 (452)
                      +........|++..|...+|.   .....+.++...-+.|-=+..|+..+|..++|+.+|+|++-.+.|++.++.++.. 
T Consensus        32 ~e~a~~~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-  110 (219)
T COG4122          32 EEFARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-  110 (219)
T ss_pred             HHHhHhcCCCCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-
Confidence            344555678888777766663   2346789999999999666666667886789999999999999999999998763 


Q ss_pred             CCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          186 AHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       186 ~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                          .++.++.+  -+--+.+...    ....+|.|++|=.=+.
T Consensus       111 ----~~i~~~~~--gdal~~l~~~----~~~~fDliFIDadK~~  144 (219)
T COG4122         111 ----DRIELLLG--GDALDVLSRL----LDGSFDLVFIDADKAD  144 (219)
T ss_pred             ----ceEEEEec--CcHHHHHHhc----cCCCccEEEEeCChhh
Confidence                46777775  2222333321    1247999999976543

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=96.24  E-value=0.023  Score=53.40  Aligned_cols=75  Identities=15%  Similarity=0.038  Sum_probs=57.9

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|.-.|.|-.+..+....+. ++|+|+|.++.+++.+++.++..+.      .++++++++..++    ..    
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~~----~~----  106 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAEDF----QH----  106 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhhc----cc----
Confidence            4789999999999777777655554 5799999999999999988876543      2688889887654    11    


Q ss_pred             ccccCccEEEEc
Q 012954          213 ILRSGVDAILMD  224 (452)
Q Consensus       213 l~~~~VDGILfD  224 (452)
                        ...+|.|+.+
T Consensus       107 --~~~fD~I~s~  116 (181)
T TIGR00138       107 --EEQFDVITSR  116 (181)
T ss_pred             --cCCccEEEeh
Confidence              1369999886

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=96.24  E-value=0.019  Score=53.80  Aligned_cols=84  Identities=21%  Similarity=0.170  Sum_probs=53.2

Q ss_pred             CCCCCCEEEEEccCCChhHHHHHHhCCCCC--------EEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          130 SSRTITSFVDCTLGAAGHSSAIIRAHPELK--------LHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       130 ~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g--------~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      ..+++.+++|-.+|.|.=-.+-+....+..        .++|+|+|+.+++.|+++++.++.     ...+.+.+.+|.+
T Consensus        25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----~~~i~~~~~D~~~   99 (179)
T PF01170_consen   25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----EDYIDFIQWDARE   99 (179)
T ss_dssp             T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGG
T ss_pred             CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----CCceEEEecchhh
Confidence            356889999999999943322111122221        389999999999999999988764     2367888888888


Q ss_pred             HHHHHhhhcccccccCccEEEEccCC
Q 012954          202 IKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +.  +.       ...+|.|+.|.=|
T Consensus       100 l~--~~-------~~~~d~IvtnPPy  116 (179)
T PF01170_consen  100 LP--LP-------DGSVDAIVTNPPY  116 (179)
T ss_dssp             GG--GT-------TSBSCEEEEE--S
T ss_pred             cc--cc-------cCCCCEEEECcch
Confidence            75  11       2369999998755

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=96.20  E-value=0.02  Score=57.09  Aligned_cols=92  Identities=12%  Similarity=0.158  Sum_probs=68.0

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      +-.|||-.-+..    ...+.++|...|+|.=+.++.++.++ .++.|+|+|+++.+.|++.++....     ..|++++
T Consensus        31 ~DaiLL~~~~~~----~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l-----~~ri~v~  100 (248)
T COG4123          31 TDAILLAAFAPV----PKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPL-----EERIQVI  100 (248)
T ss_pred             cHHHHHHhhccc----ccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcc-----hhceeEe
Confidence            344565443333    34789999999999888888888777 5799999999999999998765332     4589999


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEc
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ++++.++......       ..+|.|+.|
T Consensus       101 ~~Di~~~~~~~~~-------~~fD~Ii~N  122 (248)
T COG4123         101 EADIKEFLKALVF-------ASFDLIICN  122 (248)
T ss_pred             hhhHHHhhhcccc-------cccCEEEeC
Confidence            9999887544331       247777754

>TIGR03438 probable methyltransferase

Probab=96.13  E-value=0.042  Score=55.39  Aligned_cols=68  Identities=16%  Similarity=0.250  Sum_probs=54.2

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV  205 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~  205 (452)
                      ++..+||.-.|.|-.|..||+.++....|+|+|+++++++.|.+++.....     ..++..++++|.+...+
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----~~~v~~i~gD~~~~~~~  130 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----QLEVHGICADFTQPLAL  130 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----CceEEEEEEcccchhhh
Confidence            567999999999999999999986435699999999999999988865211     24677788888764333

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=96.09  E-value=0.039  Score=52.61  Aligned_cols=90  Identities=14%  Similarity=0.236  Sum_probs=66.6

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      .|+-.+++...-     ..++||.-+|.|.|..++....|+. .++|+|+....+..|.+++...+.      .|+.+++
T Consensus         6 ~~~~~~~~f~~~-----~~l~lEIG~G~G~~l~~~A~~~Pd~-n~iGiE~~~~~v~~a~~~~~~~~l------~Nv~~~~   73 (195)
T PF02390_consen    6 EPLDWQEIFGND-----NPLILEIGCGKGEFLIELAKRNPDI-NFIGIEIRKKRVAKALRKAEKRGL------KNVRFLR   73 (195)
T ss_dssp             CTTCHHHHHTSC-----CEEEEEET-TTSHHHHHHHHHSTTS-EEEEEES-HHHHHHHHHHHHHHTT------SSEEEEE
T ss_pred             CccCHHHHcCCC-----CCeEEEecCCCCHHHHHHHHHCCCC-CEEEEecchHHHHHHHHHHHhhcc------cceEEEE
Confidence            455566655543     2399999999999999999999986 589999999999999888877654      4899999


Q ss_pred             cCcch-HHHHHhhhcccccccCccEEEEcc
Q 012954          197 KNFRH-IKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       197 ~nF~~-i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++-.. +..++.       .+.+|.|.+.+
T Consensus        74 ~da~~~l~~~~~-------~~~v~~i~i~F   96 (195)
T PF02390_consen   74 GDARELLRRLFP-------PGSVDRIYINF   96 (195)
T ss_dssp             S-CTTHHHHHST-------TTSEEEEEEES
T ss_pred             ccHHHHHhhccc-------CCchheEEEeC
Confidence            88776 443433       24688887764

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=96.04  E-value=0.034  Score=52.49  Aligned_cols=54  Identities=17%  Similarity=0.070  Sum_probs=43.2

Q ss_pred             HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      ++++.+.. .+++.++|.-.|.|.++..++++   ...|+|+|.++.+++.++++...
T Consensus        21 ~l~~~l~~-~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~   74 (197)
T PRK11207         21 EVLEAVKV-VKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAA   74 (197)
T ss_pred             HHHHhccc-CCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHH
Confidence            44555553 36689999999999999888875   23699999999999999987654

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=96.02  E-value=0.018  Score=59.62  Aligned_cols=70  Identities=16%  Similarity=0.129  Sum_probs=52.3

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      ..|++.+++++. ..++ .++|+=.|.|..|..+.+..   .+|+|+|.+++|++.|++..+..+-      .++++++.
T Consensus       183 ~~l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i------~n~~f~~~  251 (352)
T PF05958_consen  183 EKLYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGI------DNVEFIRG  251 (352)
T ss_dssp             HHHHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--------SEEEEE-
T ss_pred             HHHHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCC------CcceEEEe
Confidence            459999999997 3344 79999999999999987764   4699999999999999988765432      36777765


Q ss_pred             C
Q 012954          198 N  198 (452)
Q Consensus       198 n  198 (452)
                      +
T Consensus       252 ~  252 (352)
T PF05958_consen  252 D  252 (352)
T ss_dssp             -
T ss_pred             e
Confidence            4

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=95.99  E-value=0.034  Score=55.72  Aligned_cols=86  Identities=17%  Similarity=0.190  Sum_probs=59.0

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      |.-+.++.+.  .++..++|.-.|.|..+.+++. .+. .+|+|+|+|+.|++.|++++...+.     ..++.++..+.
T Consensus       148 l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~-~g~-~~V~avDid~~al~~a~~n~~~n~~-----~~~~~~~~~~~  218 (288)
T TIGR00406       148 LCLEWLEDLD--LKDKNVIDVGCGSGILSIAALK-LGA-AKVVGIDIDPLAVESARKNAELNQV-----SDRLQVKLIYL  218 (288)
T ss_pred             HHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHH-cCC-CeEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEeccc
Confidence            5556666654  3788999999999988877664 444 4799999999999999998765432     12444444331


Q ss_pred             chHHHHHhhhcccccccCccEEEEcc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      .   ..        ....+|.|++|+
T Consensus       219 ~---~~--------~~~~fDlVvan~  233 (288)
T TIGR00406       219 E---QP--------IEGKADVIVANI  233 (288)
T ss_pred             c---cc--------cCCCceEEEEec
Confidence            1   11        123699999875

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.045  Score=53.38  Aligned_cols=125  Identities=13%  Similarity=0.116  Sum_probs=89.7

Q ss_pred             cccCCccCCchhhhhhcC------CCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCH
Q 012954           95 RRTRSNKDYDYESIIQQQ------QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDP  168 (452)
Q Consensus        95 ~r~~~~~~~~~~~~~~~~------~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~  168 (452)
                      |--+-+..|..-+|.+..      ...=-|-|+--+++.|. ++++..+++.=.|.| +..|+|+++-.  +|+++|+++
T Consensus        29 Re~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~-~~~g~~VLEIGtGsG-Y~aAvla~l~~--~V~siEr~~  104 (209)
T COG2518          29 RELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE-LKPGDRVLEIGTGSG-YQAAVLARLVG--RVVSIERIE  104 (209)
T ss_pred             HHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC-CCCCCeEEEECCCch-HHHHHHHHHhC--eEEEEEEcH
Confidence            333444444444443332      33356778999999998 679999999999999 77788888654  799999999


Q ss_pred             HHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCcc------CCCCCCCC
Q 012954          169 SALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSM------QVNNPERG  238 (452)
Q Consensus       169 ~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~------QLDd~~RG  238 (452)
                      +-.+.|+++|+..+.      .++.+++++=+.   =+.+      ...+|.|+..-++...      ||....|-
T Consensus       105 ~L~~~A~~~L~~lg~------~nV~v~~gDG~~---G~~~------~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrl  165 (209)
T COG2518         105 ELAEQARRNLETLGY------ENVTVRHGDGSK---GWPE------EAPYDRIIVTAAAPEVPEALLDQLKPGGRL  165 (209)
T ss_pred             HHHHHHHHHHHHcCC------CceEEEECCccc---CCCC------CCCcCEEEEeeccCCCCHHHHHhcccCCEE
Confidence            999999999998865      257777765331   1111      1369999999988875      77776653

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=95.94  E-value=0.04  Score=50.68  Aligned_cols=84  Identities=13%  Similarity=0.125  Sum_probs=61.1

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      +||.+.+..+    +++.++|.-.|.|..+..+.+..+   +|+|+|.++++++.|+++++..+.       ++++++++
T Consensus         9 ~~l~~~l~~~----~~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~d   74 (179)
T TIGR00537         9 LLLEANLREL----KPDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNV-------GLDVVMTD   74 (179)
T ss_pred             HHHHHHHHhc----CCCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEcc
Confidence            4555555544    346899999999999998887643   699999999999999998865422       46666666


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCC
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ....   .        ...+|.|+.|.-+
T Consensus        75 ~~~~---~--------~~~fD~Vi~n~p~   92 (179)
T TIGR00537        75 LFKG---V--------RGKFDVILFNPPY   92 (179)
T ss_pred             cccc---c--------CCcccEEEECCCC
Confidence            4331   1        1268999988665

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=95.94  E-value=0.027  Score=54.77  Aligned_cols=94  Identities=16%  Similarity=0.208  Sum_probs=67.1

Q ss_pred             CccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE
Q 012954          115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT  194 (452)
Q Consensus       115 ~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l  194 (452)
                      .|.+-++..+++.+. ..++..++|.-.|.|.-+..+.+..|. ..|+|+|.++.+++.|+++             ++.+
T Consensus        12 ~~~~~~~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~~-------------~~~~   76 (255)
T PRK14103         12 DHRGRPFYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARER-------------GVDA   76 (255)
T ss_pred             hHhhCHHHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHhc-------------CCcE
Confidence            366667788999996 457889999999999888888887765 5799999999999998752             2334


Q ss_pred             EccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCC
Q 012954          195 FAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP  235 (452)
Q Consensus       195 i~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~  235 (452)
                      ++++...+   ..       ...+|.|+.+..+  +.+.++
T Consensus        77 ~~~d~~~~---~~-------~~~fD~v~~~~~l--~~~~d~  105 (255)
T PRK14103         77 RTGDVRDW---KP-------KPDTDVVVSNAAL--QWVPEH  105 (255)
T ss_pred             EEcChhhC---CC-------CCCceEEEEehhh--hhCCCH
Confidence            55554322   11       1358888886654  344444

>PRK04457 spermidine synthase; Provisional

Probab=95.85  E-value=0.059  Score=53.54  Aligned_cols=79  Identities=19%  Similarity=0.257  Sum_probs=59.3

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      +...++|.=+|+|.-+..+++..|. .+++++|+|+++++.|++.+.....     ..++++++++..+   ++...   
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~---~l~~~---  133 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPD-TRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAE---YIAVH---  133 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHH---HHHhC---
Confidence            4568999999999888888888876 4699999999999999987643211     2478888887654   33332   


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                        ...+|.|++|.
T Consensus       134 --~~~yD~I~~D~  144 (262)
T PRK04457        134 --RHSTDVILVDG  144 (262)
T ss_pred             --CCCCCEEEEeC
Confidence              13699999984

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=95.81  E-value=0.042  Score=53.03  Aligned_cols=98  Identities=11%  Similarity=0.118  Sum_probs=68.5

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      .....+..|........++..--|.|-=+..|++.+|+.++|+.+|.|++-.+.|++.++..+.     ..+++++.++-
T Consensus        32 ~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~~~gda  106 (205)
T PF01596_consen   32 ETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEVIEGDA  106 (205)
T ss_dssp             HHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEEEES-H
T ss_pred             HHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEEEEecc
Confidence            3444455543222447999999999955566666688889999999999999999999988765     35899998876


Q ss_pred             chH-HHHHhhhcccccccCccEEEEccC
Q 012954          200 RHI-KSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       200 ~~i-~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      .++ +++..+..    ...+|.|++|-.
T Consensus       107 ~~~l~~l~~~~~----~~~fD~VFiDa~  130 (205)
T PF01596_consen  107 LEVLPELANDGE----EGQFDFVFIDAD  130 (205)
T ss_dssp             HHHHHHHHHTTT----TTSEEEEEEEST
T ss_pred             HhhHHHHHhccC----CCceeEEEEccc
Confidence            553 33332211    236999999974

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00438 rrmJ cell division protein FtsJ

Probab=95.77  E-value=0.043  Score=50.96  Aligned_cols=84  Identities=15%  Similarity=0.196  Sum_probs=56.8

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      +.|+.+-+....+++.++|...|.||-+..+++.+...++|+|+|+++..         ..        .++.+++.++.
T Consensus        20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~--------~~i~~~~~d~~   82 (188)
T TIGR00438        20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PI--------ENVDFIRGDFT   82 (188)
T ss_pred             HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cC--------CCceEEEeeCC
Confidence            45566655544688999999999999999999987655689999999853         11        13556666665


Q ss_pred             hHH---HHHhhhcccccccCccEEEEcc
Q 012954          201 HIK---SVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       201 ~i~---~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +..   .+....    ...++|.|+.|.
T Consensus        83 ~~~~~~~l~~~~----~~~~~D~V~~~~  106 (188)
T TIGR00438        83 DEEVLNKIRERV----GDDKVDVVMSDA  106 (188)
T ss_pred             ChhHHHHHHHHh----CCCCccEEEcCC
Confidence            432   111111    123688888775

>TIGR00755 ksgA dimethyladenosine transferase

Probab=95.76  E-value=0.037  Score=54.17  Aligned_cols=79  Identities=8%  Similarity=0.098  Sum_probs=63.3

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      .++-.-|-+++++++.+. ..++..++|.=.|.|..|..|++..+   .|+|+|.|+.+++.+++++...        .+
T Consensus         9 q~fl~d~~i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~--------~~   76 (253)
T TIGR00755         9 QNFLIDESVIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLY--------ER   76 (253)
T ss_pred             CccCCCHHHHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcC--------Cc
Confidence            445556778999999996 45788999999999999999998864   3899999999999998766431        26


Q ss_pred             EEEEccCcchH
Q 012954          192 THTFAKNFRHI  202 (452)
Q Consensus       192 ~~li~~nF~~i  202 (452)
                      ++++++++.++
T Consensus        77 v~v~~~D~~~~   87 (253)
T TIGR00755        77 LEVIEGDALKV   87 (253)
T ss_pred             EEEEECchhcC
Confidence            78888877543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PLN03075 nicotianamine synthase; Provisional

Probab=95.71  E-value=0.05  Score=55.54  Aligned_cols=78  Identities=17%  Similarity=0.135  Sum_probs=58.5

Q ss_pred             CCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhh-hccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNS-LLHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~-~~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      +...++|.=.|.||-|..+|.+ +.+.++++|+|+|++|++.|++.+.. .+.     ..+++|...|-.++.   ..  
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~~rV~F~~~Da~~~~---~~--  192 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----SKRMFFHTADVMDVT---ES--  192 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----cCCcEEEECchhhcc---cc--
Confidence            6688999999999998888875 44557899999999999999998743 322     246888777765431   11  


Q ss_pred             ccccccCccEEEEc
Q 012954          211 ENILRSGVDAILMD  224 (452)
Q Consensus       211 ~~l~~~~VDGILfD  224 (452)
                          ...+|.|+.+
T Consensus       193 ----l~~FDlVF~~  202 (296)
T PLN03075        193 ----LKEYDVVFLA  202 (296)
T ss_pred             ----cCCcCEEEEe
Confidence                1369999988

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=95.67  E-value=0.051  Score=57.63  Aligned_cols=94  Identities=11%  Similarity=0.108  Sum_probs=64.7

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ..++++.+. ..++..++|...|.|+++..+.+.. + ..|+|+|+++.+++.|+++....       ..++++++.++.
T Consensus       255 te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~-~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~  324 (475)
T PLN02336        255 TKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-D-VHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCT  324 (475)
T ss_pred             HHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-C-CEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCcc
Confidence            455667665 4577899999999999998888766 3 46999999999999998765432       136777777765


Q ss_pred             hHHHHHhhhcccccccCccEEEEccCCCccCCCCC
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP  235 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~  235 (452)
                      .+.  +       ....+|.|+...-  -+++.++
T Consensus       325 ~~~--~-------~~~~fD~I~s~~~--l~h~~d~  348 (475)
T PLN02336        325 KKT--Y-------PDNSFDVIYSRDT--ILHIQDK  348 (475)
T ss_pred             cCC--C-------CCCCEEEEEECCc--ccccCCH
Confidence            421  1       1235888876432  3444444

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=95.66  E-value=0.064  Score=58.26  Aligned_cols=81  Identities=12%  Similarity=0.139  Sum_probs=62.7

Q ss_pred             CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccc
Q 012954          134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENI  213 (452)
Q Consensus       134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l  213 (452)
                      +..++|.-.|.|.-+..++..+|. .+|+|+|+++.|++.|+++++.++.     ..++.++++++-.   .+.      
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l-----~~~v~~~~~D~~~---~~~------  203 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEV-----TDRIQIIHSNWFE---NIE------  203 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCC-----ccceeeeecchhh---hCc------
Confidence            468999999999999999988876 4799999999999999998876543     2368888877521   111      


Q ss_pred             cccCccEEEEccCCCcc
Q 012954          214 LRSGVDAILMDLGMSSM  230 (452)
Q Consensus       214 ~~~~VDGILfDLGvSS~  230 (452)
                       ...+|.|+.|.=|-..
T Consensus       204 -~~~fDlIvsNPPYi~~  219 (506)
T PRK01544        204 -KQKFDFIVSNPPYISH  219 (506)
T ss_pred             -CCCccEEEECCCCCCc
Confidence             1369999998876653

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=95.65  E-value=0.063  Score=53.33  Aligned_cols=103  Identities=11%  Similarity=0.015  Sum_probs=68.8

Q ss_pred             Cccccch--H---HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCC
Q 012954          115 SHIPVML--G---EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPH  189 (452)
Q Consensus       115 ~H~PVLl--~---Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~  189 (452)
                      .+.|.|.  .   +.+..|........++..--+.|-=+..|...+++.++|+++|+|++..+.|++.++..+.     .
T Consensus        56 ~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----~  130 (247)
T PLN02589         56 HPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----A  130 (247)
T ss_pred             cCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----C
Confidence            3456653  2   3333333222446888888788855566666688788999999999999999999988764     3


Q ss_pred             ceEEEEccCcchHHHHHhhhcccccccCccEEEEc
Q 012954          190 LKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       190 ~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      .++++++++..+.-.-+...+.  ....+|.|++|
T Consensus       131 ~~I~~~~G~a~e~L~~l~~~~~--~~~~fD~iFiD  163 (247)
T PLN02589        131 HKIDFREGPALPVLDQMIEDGK--YHGTFDFIFVD  163 (247)
T ss_pred             CceEEEeccHHHHHHHHHhccc--cCCcccEEEec
Confidence            5899999987654322221110  01369999998

>PRK06922 hypothetical protein; Provisional

Probab=95.63  E-value=0.036  Score=62.08  Aligned_cols=78  Identities=14%  Similarity=0.158  Sum_probs=58.6

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      +++.++|.-+|.|..+..+.+.+|+ +.++|+|+++.+++.|++++...+       .++.+++++..++...+.     
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~-~kVtGIDIS~~MLe~Ararl~~~g-------~~ie~I~gDa~dLp~~fe-----  484 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETED-KRIYGIDISENVIDTLKKKKQNEG-------RSWNVIKGDAINLSSSFE-----  484 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcC-------CCeEEEEcchHhCccccC-----
Confidence            5789999999999888888877876 579999999999999998765432       256777777655433232     


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                        ...+|.|++..
T Consensus       485 --deSFDvVVsn~  495 (677)
T PRK06922        485 --KESVDTIVYSS  495 (677)
T ss_pred             --CCCEEEEEEch
Confidence              24699998653

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=95.60  E-value=0.082  Score=54.89  Aligned_cols=72  Identities=13%  Similarity=0.140  Sum_probs=56.8

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .|++.+.+++. . .+..++|+-.|.|.-|.++....   .+|+|+|.++.|++.|+++++..+.      .++++++++
T Consensus       194 ~l~~~v~~~~~-~-~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~~d  262 (362)
T PRK05031        194 KMLEWALDATK-G-SKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI------DNVQIIRMS  262 (362)
T ss_pred             HHHHHHHHHhh-c-CCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEECC
Confidence            48888888885 2 23579999999999999777654   3699999999999999998766532      268888887


Q ss_pred             cch
Q 012954          199 FRH  201 (452)
Q Consensus       199 F~~  201 (452)
                      ...
T Consensus       263 ~~~  265 (362)
T PRK05031        263 AEE  265 (362)
T ss_pred             HHH
Confidence            654

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=95.60  E-value=0.087  Score=50.83  Aligned_cols=98  Identities=17%  Similarity=0.202  Sum_probs=64.3

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      |=|..|=........++.+++|+-.|-|..|..+++.... ..|+|+|+.|.|++..++.++...-     ..++..+++
T Consensus        86 ~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~-~~V~A~d~Np~a~~~L~~Ni~lNkv-----~~~i~~~~~  159 (200)
T PF02475_consen   86 PRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKA-KRVYAVDLNPDAVEYLKENIRLNKV-----ENRIEVING  159 (200)
T ss_dssp             GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-S-SEEEEEES-HHHHHHHHHHHHHTT------TTTEEEEES
T ss_pred             cccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCc-cEEEEecCCHHHHHHHHHHHHHcCC-----CCeEEEEcC
Confidence            4455665555443468999999999999999999875433 5799999999999999887765433     346888888


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEccCCCccC
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQ  231 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~Q  231 (452)
                      ....+..   .       ..+|-|+|+|=-+|..
T Consensus       160 D~~~~~~---~-------~~~drvim~lp~~~~~  183 (200)
T PF02475_consen  160 DAREFLP---E-------GKFDRVIMNLPESSLE  183 (200)
T ss_dssp             -GGG------T-------T-EEEEEE--TSSGGG
T ss_pred             CHHHhcC---c-------cccCEEEECChHHHHH
Confidence            8776643   1       3689999999766654

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK05785 hypothetical protein; Provisional

Probab=95.58  E-value=0.022  Score=55.15  Aligned_cols=158  Identities=9%  Similarity=0.073  Sum_probs=100.9

Q ss_pred             hHHHHhhccCC-CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          121 LGEVLDVFSSS-RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       121 l~Evl~~L~~~-~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      -+++++.+... .+++.++|.-.|.|-.+..+.+.. + +.|+|+|..+++++.|+++.              ..+++++
T Consensus        38 r~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~-~-~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~  101 (226)
T PRK05785         38 RAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF-K-YYVVALDYAENMLKMNLVAD--------------DKVVGSF  101 (226)
T ss_pred             HHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc-C-CEEEEECCCHHHHHHHHhcc--------------ceEEech
Confidence            34455544310 246899999999998888777766 2 57999999999999987631              1245555


Q ss_pred             chHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCcccCC--CCC----CcccCCCCCCCCHHHHHhcCChHHHHH
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLG--DGP----LDMRMDPQASLKAEDILNSWPDAEVGR  273 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~--dgP----LDMRMD~~~~~tAadiLN~~se~eL~~  273 (452)
                      .+++         +..+.+|.|+.-+|+  ++++|+++.++=..  =-|    |++  ..........+++-|...-+-.
T Consensus       102 ~~lp---------~~d~sfD~v~~~~~l--~~~~d~~~~l~e~~RvLkp~~~ile~--~~p~~~~~~~~~~~y~~~~~P~  168 (226)
T PRK05785        102 EALP---------FRDKSFDVVMSSFAL--HASDNIEKVIAEFTRVSRKQVGFIAM--GKPDNVIKRKYLSFYLRYIMPY  168 (226)
T ss_pred             hhCC---------CCCCCEEEEEecChh--hccCCHHHHHHHHHHHhcCceEEEEe--CCCCcHHHHHHHHHHHHHHHHH
Confidence            4431         113479999998876  57888877765332  012    232  1112223455666677777777


Q ss_pred             HHHHhCCCcchHH-HHHHHHHHHhhCCCCcHHHHHHHHHhh
Q 012954          274 VLREYGEESNWHL-LQNKIVQARLRGGLHSTGELVDLIQSV  313 (452)
Q Consensus       274 Ifr~YGEE~~A~r-IA~aIv~~R~~~~i~TT~eLa~iI~~~  313 (452)
                      |-+-++..+.+++ +...|-      .+.+..+|.++++++
T Consensus       169 ~~~~~~~~~~~Y~yl~~si~------~f~~~~~~~~~~~~~  203 (226)
T PRK05785        169 IACLAGAKCRDYKYIYYIYE------RLPTNSFHREIFEKY  203 (226)
T ss_pred             HHHHhcCChHHHHHHHHHHH------HCCCHHHHHHHHHHH
Confidence            7777777666653 455442      456788888888886

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=95.55  E-value=0.13  Score=55.73  Aligned_cols=92  Identities=16%  Similarity=0.166  Sum_probs=57.6

Q ss_pred             CEEEEEccCCChhHHHHHHhCCC-------CCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHh
Q 012954          135 TSFVDCTLGAAGHSSAIIRAHPE-------LKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLG  207 (452)
Q Consensus       135 giyVDaTlG~GGHS~aIL~~~p~-------~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~  207 (452)
                      ..++|-++|.|+=..++++.++.       .-.++|+|+|+.|+..|+.+|..++.      ....+.+.+|-.- ..+.
T Consensus        33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------~~~~i~~~d~l~~-~~~~  105 (524)
T TIGR02987        33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------LEINVINFNSLSY-VLLN  105 (524)
T ss_pred             eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------CCceeeecccccc-cccc
Confidence            47999999999999999987642       13589999999999999998876531      1233344443211 0100


Q ss_pred             hhcccccccCccEEEEccCCCccCCCCCC
Q 012954          208 QIDENILRSGVDAILMDLGMSSMQVNNPE  236 (452)
Q Consensus       208 ~~~~~l~~~~VDGILfDLGvSS~QLDd~~  236 (452)
                      ...   ...++|.|+.|==|..+|.+..+
T Consensus       106 ~~~---~~~~fD~IIgNPPy~~~k~~~~~  131 (524)
T TIGR02987       106 IES---YLDLFDIVITNPPYGRLKPDKKE  131 (524)
T ss_pred             ccc---ccCcccEEEeCCCccccCcchhh
Confidence            000   01246777766666665655444

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.50  E-value=0.023  Score=56.20  Aligned_cols=80  Identities=15%  Similarity=0.156  Sum_probs=45.3

Q ss_pred             CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCC---CCceEEEEccCcchHHHHHhhhcc
Q 012954          135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAH---PHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~---~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      ..++|||+|.|.+| .+|..++  ++|+++.++|-.-...+.-|+.+....+.   -..|++++++++.+.   |...  
T Consensus        77 ~~VLDaTaGLG~Da-~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~---L~~~--  148 (234)
T PF04445_consen   77 PSVLDATAGLGRDA-FVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY---LRQP--  148 (234)
T ss_dssp             --EEETT-TTSHHH-HHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH---CCCH--
T ss_pred             CEEEECCCcchHHH-HHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH---Hhhc--
Confidence            48999999999555 4555664  46999999998877766655554322110   013899999998764   3321  


Q ss_pred             cccccCccEEEEcc
Q 012954          212 NILRSGVDAILMDL  225 (452)
Q Consensus       212 ~l~~~~VDGILfDL  225 (452)
                         ...+|.|-||=
T Consensus       149 ---~~s~DVVY~DP  159 (234)
T PF04445_consen  149 ---DNSFDVVYFDP  159 (234)
T ss_dssp             ---SS--SEEEE--
T ss_pred             ---CCCCCEEEECC
Confidence               24799999984

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=95.47  E-value=0.08  Score=54.83  Aligned_cols=76  Identities=9%  Similarity=0.067  Sum_probs=59.9

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      ....|++.+++++. . .++.++|.-.|.|.-|.++.+..   ..|+|+|.++.|++.|+++++..+.      .+++++
T Consensus       182 ~~~~l~~~v~~~~~-~-~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~  250 (353)
T TIGR02143       182 VNIKMLEWACEVTQ-G-SKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI------DNVQII  250 (353)
T ss_pred             HHHHHHHHHHHHhh-c-CCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC------CcEEEE
Confidence            45789999999986 2 23469999999999999776655   3699999999999999998866532      267888


Q ss_pred             ccCcchH
Q 012954          196 AKNFRHI  202 (452)
Q Consensus       196 ~~nF~~i  202 (452)
                      .++..++
T Consensus       251 ~~d~~~~  257 (353)
T TIGR02143       251 RMSAEEF  257 (353)
T ss_pred             EcCHHHH
Confidence            8887553

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=95.44  E-value=0.079  Score=52.40  Aligned_cols=83  Identities=16%  Similarity=0.095  Sum_probs=61.0

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ..++++.+. ..++..++|.-.|.|+-+..+.+..+  ..|+|+|.++.+++.|+++...        ..++.+++.++.
T Consensus        41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~~  109 (263)
T PTZ00098         41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDIL  109 (263)
T ss_pred             HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCcc
Confidence            577888886 46889999999999998888876653  4799999999999999987543        125777777664


Q ss_pred             hHHHHHhhhcccccccCccEEEE
Q 012954          201 HIKSVLGQIDENILRSGVDAILM  223 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILf  223 (452)
                      .+.         +....+|.|+.
T Consensus       110 ~~~---------~~~~~FD~V~s  123 (263)
T PTZ00098        110 KKD---------FPENTFDMIYS  123 (263)
T ss_pred             cCC---------CCCCCeEEEEE
Confidence            321         11235787776

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=95.39  E-value=0.11  Score=47.70  Aligned_cols=49  Identities=18%  Similarity=0.223  Sum_probs=38.6

Q ss_pred             hHHHHhhccCCCC--CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHH
Q 012954          121 LGEVLDVFSSSRT--ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPS  169 (452)
Q Consensus       121 l~Evl~~L~~~~~--ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~  169 (452)
                      |.|+.+.+....+  +..++|...+-||=|..++++....++|+|+|.-+.
T Consensus         9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen    9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            5677777762234  489999999999999999998755578999999976

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR00095 RNA methyltransferase, RsmD family

Probab=95.38  E-value=0.1  Score=49.37  Aligned_cols=95  Identities=12%  Similarity=0.071  Sum_probs=63.4

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc-
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF-  199 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF-  199 (452)
                      ..-+...|...-++..++|+-.|.|.=+.+.+++..  .+|+++|+|+.|++.+++.++..+.     ..++++++.+. 
T Consensus        37 rea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~-----~~~~~~~~~D~~  109 (189)
T TIGR00095        37 RELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKS-----GEQAEVVRNSAL  109 (189)
T ss_pred             HHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCC-----cccEEEEehhHH
Confidence            333445443222578999999999999998888743  3699999999999999998877643     23677777775 


Q ss_pred             chHHHHHhhhcccccccCccEEEEccCCC
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      +.+......      ...+|.|++|==|.
T Consensus       110 ~~l~~~~~~------~~~~dvv~~DPPy~  132 (189)
T TIGR00095       110 RALKFLAKK------PTFDNVIYLDPPFF  132 (189)
T ss_pred             HHHHHhhcc------CCCceEEEECcCCC
Confidence            333221110      11367777776554

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=95.31  E-value=0.083  Score=53.03  Aligned_cols=76  Identities=11%  Similarity=0.080  Sum_probs=57.6

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +++-+++.+. .+||..++|.-+|.||=+..+.++++  .+|.|+..+++-.+.+++++...+.     .+++++...+|
T Consensus        50 k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl-----~~~v~v~~~D~  121 (273)
T PF02353_consen   50 KLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGL-----EDRVEVRLQDY  121 (273)
T ss_dssp             HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTS-----SSTEEEEES-G
T ss_pred             HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEeec
Confidence            4777888886 57999999999999999999999983  4799999999999999999987654     34788888888


Q ss_pred             chHH
Q 012954          200 RHIK  203 (452)
Q Consensus       200 ~~i~  203 (452)
                      .++.
T Consensus       122 ~~~~  125 (273)
T PF02353_consen  122 RDLP  125 (273)
T ss_dssp             GG--
T ss_pred             cccC
Confidence            7764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK06202 hypothetical protein; Provisional

Probab=95.22  E-value=0.047  Score=52.30  Aligned_cols=48  Identities=23%  Similarity=0.179  Sum_probs=38.8

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhC---CCCCEEEEEeCCHHHHHHHHHHHh
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAH---PELKLHIGVDVDPSALAKARAHLN  179 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~---p~~g~VigfDrD~~Ai~~Ak~rL~  179 (452)
                      .++..++|.-.|.|+.+..|++..   +....|+|+|.++++++.|+++..
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~  109 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR  109 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc
Confidence            456799999999999998887643   223479999999999999987653

>PHA03411 putative methyltransferase; Provisional

Probab=95.16  E-value=0.053  Score=55.01  Aligned_cols=116  Identities=9%  Similarity=0.110  Sum_probs=77.1

Q ss_pred             cchhccccccCCccCCchhhhhhc------CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEE
Q 012954           88 MGLVKEKRRTRSNKDYDYESIIQQ------QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLH  161 (452)
Q Consensus        88 ~~~~~~~~r~~~~~~~~~~~~~~~------~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~V  161 (452)
                      .+-++.+.-|-..|+|=+..++-.      .-++..+|+-..++   . ..+.+.++|...|.|.-+..++...+. .+|
T Consensus        17 ~l~~~~~~~~~~~~~~v~~~~~g~~~~~~G~FfTP~~i~~~f~~---~-~~~~grVLDLGcGsGilsl~la~r~~~-~~V   91 (279)
T PHA03411         17 ELINSDRPLTYEEKEFCYNNYHGDGLGGSGAFFTPEGLAWDFTI---D-AHCTGKVLDLCAGIGRLSFCMLHRCKP-EKI   91 (279)
T ss_pred             HHHhCCcccccCcHHHHHHhcccccccCceeEcCCHHHHHHHHh---c-cccCCeEEEcCCCCCHHHHHHHHhCCC-CEE
Confidence            344455555666777776655332      22334445434332   2 235679999999999999988887654 469


Q ss_pred             EEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          162 IGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       162 igfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      +|+|+++.+++.|++++.           ++.++++++..+.   .       ...+|.|+.|-=+-.
T Consensus        92 ~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~e~~---~-------~~kFDlIIsNPPF~~  138 (279)
T PHA03411         92 VCVELNPEFARIGKRLLP-----------EAEWITSDVFEFE---S-------NEKFDVVISNPPFGK  138 (279)
T ss_pred             EEEECCHHHHHHHHHhCc-----------CCEEEECchhhhc---c-------cCCCcEEEEcCCccc
Confidence            999999999999987531           4567788776432   1       136999999876644

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=95.15  E-value=0.11  Score=48.93  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=52.9

Q ss_pred             chHHHHhhccC--CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          120 MLGEVLDVFSS--SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       120 Ll~Evl~~L~~--~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      +++.+++.|..  ..++..++|.-.|.|.-+..+++..   ..|+|+|.++.+++.|++++...+.     ..++.++..
T Consensus        48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~  119 (230)
T PRK07580         48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGL-----AGNITFEVG  119 (230)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEc
Confidence            34566666642  2367899999999999888888653   3499999999999999998765432     125666666


Q ss_pred             Cc
Q 012954          198 NF  199 (452)
Q Consensus       198 nF  199 (452)
                      ++
T Consensus       120 d~  121 (230)
T PRK07580        120 DL  121 (230)
T ss_pred             Cc
Confidence            64

>TIGR00477 tehB tellurite resistance protein TehB

Probab=95.12  E-value=0.13  Score=48.49  Aligned_cols=56  Identities=14%  Similarity=0.036  Sum_probs=43.8

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      -.++++.+.. .+++.++|.-.|.|..+..+.+. +  ..|+|+|+++.+++.++++.+.
T Consensus        19 ~~~l~~~~~~-~~~~~vLDiGcG~G~~a~~la~~-g--~~V~~iD~s~~~l~~a~~~~~~   74 (195)
T TIGR00477        19 HSAVREAVKT-VAPCKTLDLGCGQGRNSLYLSLA-G--YDVRAWDHNPASIASVLDMKAR   74 (195)
T ss_pred             hHHHHHHhcc-CCCCcEEEeCCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHHH
Confidence            4466777763 45689999999999877777764 2  4699999999999998876543

Part of a tellurite-reducing operon tehA and tehB

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=95.12  E-value=0.096  Score=49.55  Aligned_cols=96  Identities=14%  Similarity=0.154  Sum_probs=62.8

Q ss_pred             cchHHH-HhhccCC-CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          119 VMLGEV-LDVFSSS-RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       119 VLl~Ev-l~~L~~~-~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      =.++|. .+.|... -++..++|+-.|.|.=...-|++-  ...|+.+|+|+.|+...+++++..+.     ..+++++.
T Consensus        26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~   98 (183)
T PF03602_consen   26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIK   98 (183)
T ss_dssp             HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEE
T ss_pred             HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCC-----Ccceeeec
Confidence            344554 4555421 268999999999999998888873  34699999999999999999988764     23577777


Q ss_pred             cC-cchHHHHHhhhcccccccCccEEEEccCC
Q 012954          197 KN-FRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       197 ~n-F~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      .+ +..+.+....      ...+|-|++|==|
T Consensus        99 ~d~~~~l~~~~~~------~~~fDiIflDPPY  124 (183)
T PF03602_consen   99 GDAFKFLLKLAKK------GEKFDIIFLDPPY  124 (183)
T ss_dssp             SSHHHHHHHHHHC------TS-EEEEEE--ST
T ss_pred             cCHHHHHHhhccc------CCCceEEEECCCc
Confidence            66 5555443221      2469999998433

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=95.10  E-value=0.14  Score=54.01  Aligned_cols=82  Identities=17%  Similarity=0.170  Sum_probs=56.4

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|+-.|.||=+.+.+.  +....|+++|+|+.|++.|++.++..+.+    ..++++++++..+   ++.+... 
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~~---~l~~~~~-  289 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFK---LLRTYRD-  289 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHHH---HHHHHHh-
Confidence            578999999999997765553  33457999999999999999988765421    1267888877433   2322110 


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                       ....+|.|++|-
T Consensus       290 -~~~~fDlVilDP  301 (396)
T PRK15128        290 -RGEKFDVIVMDP  301 (396)
T ss_pred             -cCCCCCEEEECC
Confidence             013699999763

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=95.05  E-value=0.07  Score=54.39  Aligned_cols=58  Identities=24%  Similarity=0.277  Sum_probs=44.4

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhhc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSLL  182 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~~  182 (452)
                      |.=|.|+.+.  .++..++|.-.|.|  -.+|... ++- ++|+|+|+||.|++.|+++.+..+
T Consensus       150 lcl~~l~~~~--~~g~~vLDvG~GSG--ILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~  208 (295)
T PF06325_consen  150 LCLELLEKYV--KPGKRVLDVGCGSG--ILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNG  208 (295)
T ss_dssp             HHHHHHHHHS--STTSEEEEES-TTS--HHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhc--cCCCEEEEeCCcHH--HHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcC
Confidence            6666666664  47889999999999  5555555 554 579999999999999999876543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=95.03  E-value=0.092  Score=52.84  Aligned_cols=87  Identities=21%  Similarity=0.300  Sum_probs=60.4

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC-
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN-  198 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n-  198 (452)
                      |+..++..+. ..+. .++|...|.|==+.+++...+.. .|+|.|+.++|++.|+++.+.++.      .++.+++.+ 
T Consensus        99 Lve~~l~~~~-~~~~-~ilDlGTGSG~iai~la~~~~~~-~V~a~Dis~~Al~~A~~Na~~~~l------~~~~~~~~dl  169 (280)
T COG2890          99 LVEAALALLL-QLDK-RILDLGTGSGAIAIALAKEGPDA-EVIAVDISPDALALARENAERNGL------VRVLVVQSDL  169 (280)
T ss_pred             HHHHHHHhhh-hcCC-cEEEecCChHHHHHHHHhhCcCC-eEEEEECCHHHHHHHHHHHHHcCC------ccEEEEeeec
Confidence            4555443343 2122 79999999998888888888874 699999999999999998877642      244444442 


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCC
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      |+.+            ..++|.|++|==|
T Consensus       170 f~~~------------~~~fDlIVsNPPY  186 (280)
T COG2890         170 FEPL------------RGKFDLIVSNPPY  186 (280)
T ss_pred             cccc------------CCceeEEEeCCCC
Confidence            4433            1368888887444

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=95.02  E-value=0.11  Score=51.98  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=58.0

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      ..+.+++.+. ..++..++|.-.|.|.++..+++++|+. +++++|. |.+++.++++++..+.     ..|++++.++|
T Consensus       137 ~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~gl-----~~rv~~~~~d~  208 (306)
T TIGR02716       137 AIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPEL-DSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDI  208 (306)
T ss_pred             HHHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCC-EEEEEec-HHHHHHHHHHHHhCCc-----cceEEEEecCc
Confidence            3455666665 4577899999999999999999999875 6899998 7899999988877653     24788888776


Q ss_pred             c
Q 012954          200 R  200 (452)
Q Consensus       200 ~  200 (452)
                      .
T Consensus       209 ~  209 (306)
T TIGR02716       209 Y  209 (306)
T ss_pred             c
Confidence            4

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=94.94  E-value=0.053  Score=56.01  Aligned_cols=63  Identities=19%  Similarity=0.337  Sum_probs=49.3

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      ..||+++.+..+....++..++|..+|-||+...-...  ..+.++|+|++.++|+.|++|.++.
T Consensus        46 Ks~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~  108 (331)
T PF03291_consen   46 KSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQL  108 (331)
T ss_dssp             HHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            47888888887654447789999999999999988875  3467999999999999999998554

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.90  E-value=0.032  Score=52.27  Aligned_cols=69  Identities=19%  Similarity=0.171  Sum_probs=49.4

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhc
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLL  182 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~  182 (452)
                      .+..|+-+=.-++|+.--..-+|..+.|...|.|==|  |.-..+....++|||+||+|++.+..+.++|.
T Consensus        27 ~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE   95 (185)
T KOG3420|consen   27 PTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFE   95 (185)
T ss_pred             CCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhh
Confidence            5566887744455554322136789999999999433  33345666679999999999999998888773

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=94.78  E-value=0.15  Score=52.83  Aligned_cols=56  Identities=27%  Similarity=0.331  Sum_probs=46.4

Q ss_pred             HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      .++.|. ....+.++|.-.|.|..+..+++..|.. .|+++|+++.|++.|++.++..
T Consensus       188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~-~v~~vDis~~Al~~A~~nl~~n  243 (342)
T PRK09489        188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKI-RLTLSDVSAAALESSRATLAAN  243 (342)
T ss_pred             HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHc
Confidence            356664 2345789999999999999999888764 6999999999999999988764

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.76  E-value=0.1  Score=41.30  Aligned_cols=68  Identities=15%  Similarity=0.230  Sum_probs=43.8

Q ss_pred             EEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccC
Q 012954          138 VDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSG  217 (452)
Q Consensus       138 VDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~  217 (452)
                      +|.=.|.|-.+..+++. +. ..|+|+|.++++++.+++++...         ++.+++.++.++.         +....
T Consensus         1 LdiG~G~G~~~~~l~~~-~~-~~v~~~D~~~~~~~~~~~~~~~~---------~~~~~~~d~~~l~---------~~~~s   60 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GG-ASVTGIDISEEMLEQARKRLKNE---------GVSFRQGDAEDLP---------FPDNS   60 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TT-CEEEEEES-HHHHHHHHHHTTTS---------TEEEEESBTTSSS---------S-TT-
T ss_pred             CEecCcCCHHHHHHHhc-cC-CEEEEEeCCHHHHHHHHhccccc---------CchheeehHHhCc---------ccccc
Confidence            57778988555555554 44 57999999999999999977543         3446677776651         11246


Q ss_pred             ccEEEEcc
Q 012954          218 VDAILMDL  225 (452)
Q Consensus       218 VDGILfDL  225 (452)
                      +|.|+..-
T Consensus        61 fD~v~~~~   68 (95)
T PF08241_consen   61 FDVVFSNS   68 (95)
T ss_dssp             EEEEEEES
T ss_pred             cccccccc
Confidence            88886643

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=94.74  E-value=0.06  Score=49.76  Aligned_cols=59  Identities=15%  Similarity=0.289  Sum_probs=41.6

Q ss_pred             CCCCcccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHH
Q 012954          112 QQSSHIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARA  176 (452)
Q Consensus       112 ~~~~H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~  176 (452)
                      .|..-.|| |++.+|....  .+|++++|.-+|.|  |+++... ++  .+.||+|++++..+.|++
T Consensus       171 ~h~~~kP~~l~~~lI~~~t--~~gdiVlDpF~GSG--TT~~aa~~l~--R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  171 KHPTQKPVELIERLIKAST--NPGDIVLDPFAGSG--TTAVAAEELG--RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             --TT-S-HHHHHHHHHHHS---TT-EEEETT-TTT--HHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             ceeecCCHHHHHHHHHhhh--ccceeeehhhhccC--hHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence            35556777 8899999985  58999999999999  5555544 54  468999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=94.57  E-value=0.094  Score=53.73  Aligned_cols=59  Identities=27%  Similarity=0.327  Sum_probs=45.3

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      .-.|.=|.++-+.  +++..++|.=.|.|  -.+|... ++- .+++|+|+||.|++.|+++...
T Consensus       148 TT~lcL~~Le~~~--~~g~~vlDvGcGSG--ILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~  207 (300)
T COG2264         148 TTSLCLEALEKLL--KKGKTVLDVGCGSG--ILAIAAAKLGA-KKVVGVDIDPQAVEAARENARL  207 (300)
T ss_pred             hHHHHHHHHHHhh--cCCCEEEEecCChh--HHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHH
Confidence            3357778888875  58999999999999  3444443 554 4699999999999999987654

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=94.56  E-value=0.12  Score=48.36  Aligned_cols=88  Identities=20%  Similarity=0.334  Sum_probs=60.9

Q ss_pred             chHHHHhhccCC--CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          120 MLGEVLDVFSSS--RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       120 Ll~Evl~~L~~~--~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      +..++++.+...  .....++|.-.|.|..+..+++..+.. +++|+|.++.+++.+++++..          ++.++..
T Consensus        19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~----------~~~~~~~   87 (240)
T TIGR02072        19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLSE----------NVQFICG   87 (240)
T ss_pred             HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcCC----------CCeEEec
Confidence            344455555421  234689999999999999999887764 599999999999999876531          4556666


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ++.++.  +       ....+|.|+.+..+
T Consensus        88 d~~~~~--~-------~~~~fD~vi~~~~l  108 (240)
T TIGR02072        88 DAEKLP--L-------EDSSFDLIVSNLAL  108 (240)
T ss_pred             chhhCC--C-------CCCceeEEEEhhhh
Confidence            665431  0       12368998887543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK00811 spermidine synthase; Provisional

Probab=94.28  E-value=0.26  Score=49.51  Aligned_cols=95  Identities=14%  Similarity=0.232  Sum_probs=65.9

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      +...|.|.+..        + ....++|+=.|.|+-+..+|+. ++..+|.++|+|++.++.|++.+..+.... ....|
T Consensus        64 e~l~h~~~~~~--------~-~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-~~d~r  132 (283)
T PRK00811         64 EMMTHVPLFAH--------P-NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGA-YDDPR  132 (283)
T ss_pred             HHhhhHHHhhC--------C-CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhcccc-ccCCc
Confidence            45556665532        2 3468899999999999999965 444579999999999999999886542110 01247


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++++.++-..   ++...     ...+|.|+.|+
T Consensus       133 v~v~~~Da~~---~l~~~-----~~~yDvIi~D~  158 (283)
T PRK00811        133 VELVIGDGIK---FVAET-----ENSFDVIIVDS  158 (283)
T ss_pred             eEEEECchHH---HHhhC-----CCcccEEEECC
Confidence            8888777544   34332     24699999986

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=94.09  E-value=0.27  Score=48.43  Aligned_cols=78  Identities=14%  Similarity=0.243  Sum_probs=63.3

Q ss_pred             CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954          135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL  214 (452)
Q Consensus       135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~  214 (452)
                      .++|+.-||.|.|...+.++.|+.. ++|+++-...+..|.+++.+.+.      .|+.+++.+=..+-+++...     
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~n-fiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~~~-----  117 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKN-FLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLIPD-----  117 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCC-EEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcCCC-----
Confidence            5999999999999999999999975 89999999999999988887643      17888887766655554432     


Q ss_pred             ccCccEEEEcc
Q 012954          215 RSGVDAILMDL  225 (452)
Q Consensus       215 ~~~VDGILfDL  225 (452)
                       +.+|+|.+++
T Consensus       118 -~sl~~I~i~F  127 (227)
T COG0220         118 -GSLDKIYINF  127 (227)
T ss_pred             -CCeeEEEEEC
Confidence             3699998875

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=94.08  E-value=0.24  Score=49.42  Aligned_cols=55  Identities=16%  Similarity=0.126  Sum_probs=42.1

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      .++++.+.. .+++.++|.=.|.|..+..+++. +  ..|+|+|.++.|++.++++.+.
T Consensus       110 ~~~~~~~~~-~~~~~vLDlGcG~G~~~~~la~~-g--~~V~avD~s~~ai~~~~~~~~~  164 (287)
T PRK12335        110 SEVLEAVQT-VKPGKALDLGCGQGRNSLYLALL-G--FDVTAVDINQQSLENLQEIAEK  164 (287)
T ss_pred             HHHHHHhhc-cCCCCEEEeCCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHH
Confidence            345555532 24569999999999888888764 2  4799999999999999887654

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=94.07  E-value=0.35  Score=50.95  Aligned_cols=89  Identities=15%  Similarity=0.162  Sum_probs=61.3

Q ss_pred             HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHH
Q 012954          124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIK  203 (452)
Q Consensus       124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~  203 (452)
                      .++.|. ...++.++|.-+|+|--+..+++..|. .+|+++|+++.|++.|++.++.....   ...+++++.++.-   
T Consensus       220 lL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~---~~~~v~~~~~D~l---  291 (378)
T PRK15001        220 FMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNAL---  291 (378)
T ss_pred             HHHhCC-cccCCeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcc---cCceEEEEEcccc---
Confidence            445554 234579999999999999888888876 47999999999999999988655321   0125666665531   


Q ss_pred             HHHhhhcccccccCccEEEEccCC
Q 012954          204 SVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       204 ~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                         ...    ....+|.|+.|-=|
T Consensus       292 ---~~~----~~~~fDlIlsNPPf  308 (378)
T PRK15001        292 ---SGV----EPFRFNAVLCNPPF  308 (378)
T ss_pred             ---ccC----CCCCEEEEEECcCc
Confidence               111    01258888887444

>PRK13699 putative methylase; Provisional

Probab=94.05  E-value=0.15  Score=49.74  Aligned_cols=64  Identities=16%  Similarity=0.280  Sum_probs=51.5

Q ss_pred             CCCCcccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          112 QQSSHIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       112 ~~~~H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      .|..-.|| |+..+|+.+.  .+|++++|.=+|.|  |+++... ++  ...+|+|+|++-.+.|.+|++..
T Consensus       143 ~hp~~kP~~l~~~~i~~~s--~~g~~vlDpf~Gsg--tt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        143 HHPTEKPVTSLQPLIESFT--HPNAIVLDPFAGSG--STCVAALQSG--RRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCCCCcHHHHHHHHHHhC--CCCCEEEeCCCCCC--HHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHH
Confidence            46667898 7777888886  58999999999999  5555544 43  45899999999999999998765

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=93.98  E-value=0.29  Score=51.42  Aligned_cols=56  Identities=13%  Similarity=0.075  Sum_probs=46.1

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHh
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLN  179 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~  179 (452)
                      ++.+++.+. .+++..++|.-+|.|+-+..+.+.++  .+|+|+|.++++++.|+++.+
T Consensus       156 ~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~  211 (383)
T PRK11705        156 LDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCA  211 (383)
T ss_pred             HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc
Confidence            445667775 46889999999999999888887663  369999999999999998764

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=93.98  E-value=0.18  Score=47.10  Aligned_cols=51  Identities=14%  Similarity=0.221  Sum_probs=40.8

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA  176 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~  176 (452)
                      ++++.+.+.   ++..++|.-+|.|.++..+.+..+.  .++|+|.++++++.+++
T Consensus         4 ~~~i~~~i~---~~~~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~   54 (194)
T TIGR02081         4 LESILNLIP---PGSRVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVA   54 (194)
T ss_pred             HHHHHHhcC---CCCEEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHH
Confidence            567777774   5679999999999998888765432  47999999999988864

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=93.80  E-value=0.25  Score=51.38  Aligned_cols=90  Identities=17%  Similarity=0.082  Sum_probs=62.8

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      ...|.+++++.+....++..++|...|.|.-+..+++.++. ..++++|.++.+++.|+++...         .++.+++
T Consensus        97 ~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~  166 (340)
T PLN02490         97 TEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPL---------KECKIIE  166 (340)
T ss_pred             hHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhhc---------cCCeEEe
Confidence            44566777776643346789999999999888888887765 4699999999999999886431         1455566


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++..++.         +....+|.|+...
T Consensus       167 gD~e~lp---------~~~~sFDvVIs~~  186 (340)
T PLN02490        167 GDAEDLP---------FPTDYADRYVSAG  186 (340)
T ss_pred             ccHHhCC---------CCCCceeEEEEcC
Confidence            6654331         0123588887743

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=93.77  E-value=0.32  Score=50.11  Aligned_cols=84  Identities=20%  Similarity=0.146  Sum_probs=58.8

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|.-+|+|..+..+.+ .  ...|+|+|.++++++.|+++......     ..++++++++..++..   .    
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~-~--g~~V~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~dae~l~~---~----  195 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLAR-M--GATVTGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTTAEKLAD---E----  195 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHH-c--CCEEEEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecCHHHhhh---c----
Confidence            567899999999998887764 2  24799999999999999876543211     1267788888765531   1    


Q ss_pred             ccccCccEEEEccCCCccCCCCC
Q 012954          213 ILRSGVDAILMDLGMSSMQVNNP  235 (452)
Q Consensus       213 l~~~~VDGILfDLGvSS~QLDd~  235 (452)
                        ...+|.|+.--  ..+++.++
T Consensus       196 --~~~FD~Vi~~~--vLeHv~d~  214 (322)
T PLN02396        196 --GRKFDAVLSLE--VIEHVANP  214 (322)
T ss_pred             --cCCCCEEEEhh--HHHhcCCH
Confidence              13689888733  34566664

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=93.71  E-value=0.19  Score=48.12  Aligned_cols=55  Identities=27%  Similarity=0.347  Sum_probs=43.0

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL  178 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL  178 (452)
                      ++.+++..+   .++..++|.-+|.|..+..+.+.++. ..++|+|+++++++.|++++
T Consensus        33 ~~~~~l~~~---~~~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~   87 (204)
T TIGR03587        33 MFARALNRL---PKIASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYL   87 (204)
T ss_pred             HHHHHHHhc---CCCCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhC
Confidence            344445444   25678999999999888888877765 46999999999999998753

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.69  E-value=0.37  Score=47.86  Aligned_cols=82  Identities=12%  Similarity=0.090  Sum_probs=56.1

Q ss_pred             CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC-cchHHHHHhhhccc
Q 012954          134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN-FRHIKSVLGQIDEN  212 (452)
Q Consensus       134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n-F~~i~~~L~~~~~~  212 (452)
                      ....||.=.=.|--+.+....+|+.|+|++||+|+++.+.+.+..+..+-     ..+++++++. -..|+++++..+  
T Consensus        74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~i~g~a~esLd~l~~~~~--  146 (237)
T KOG1663|consen   74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITFIEGPALESLDELLADGE--  146 (237)
T ss_pred             CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeeeeecchhhhHHHHHhcCC--
Confidence            35677765545644555666699999999999999999999776665443     3477777755 456666666532  


Q ss_pred             ccccCccEEEEc
Q 012954          213 ILRSGVDAILMD  224 (452)
Q Consensus       213 l~~~~VDGILfD  224 (452)
                        ...+|.+++|
T Consensus       147 --~~tfDfaFvD  156 (237)
T KOG1663|consen  147 --SGTFDFAFVD  156 (237)
T ss_pred             --CCceeEEEEc
Confidence              3457777666

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=93.65  E-value=0.34  Score=46.63  Aligned_cols=55  Identities=20%  Similarity=0.168  Sum_probs=40.7

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      .||++++... +.+.++|.-.|.|.+|..+.++ +  -.|.|+|+++.|++.+++..+.
T Consensus        20 s~v~~a~~~~-~~g~~LDlgcG~GRNalyLA~~-G--~~VtAvD~s~~al~~l~~~a~~   74 (192)
T PF03848_consen   20 SEVLEAVPLL-KPGKALDLGCGEGRNALYLASQ-G--FDVTAVDISPVALEKLQRLAEE   74 (192)
T ss_dssp             HHHHHHCTTS--SSEEEEES-TTSHHHHHHHHT-T---EEEEEESSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhc-CCCcEEEcCCCCcHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHhh
Confidence            4555555533 5689999999999999999876 2  2499999999999988765443

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=93.57  E-value=0.35  Score=49.48  Aligned_cols=84  Identities=18%  Similarity=0.220  Sum_probs=56.9

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      +.++..|.+ ..++.++|.-+|.|.|+..+++..+.  .|+|+|.++..+..++..-.....     ..+++++..++.+
T Consensus       112 ~~l~~~l~~-l~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~-----~~~i~~~~~d~e~  183 (322)
T PRK15068        112 DRVLPHLSP-LKGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGN-----DQRAHLLPLGIEQ  183 (322)
T ss_pred             HHHHHhhCC-CCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCC-----CCCeEEEeCCHHH
Confidence            345556653 47889999999999999999987443  599999999888765432111111     1267777777765


Q ss_pred             HHHHHhhhcccccccCccEEEE
Q 012954          202 IKSVLGQIDENILRSGVDAILM  223 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILf  223 (452)
                      +..          ...+|.|+.
T Consensus       184 lp~----------~~~FD~V~s  195 (322)
T PRK15068        184 LPA----------LKAFDTVFS  195 (322)
T ss_pred             CCC----------cCCcCEEEE
Confidence            521          135888774

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=93.54  E-value=0.22  Score=48.13  Aligned_cols=55  Identities=22%  Similarity=0.225  Sum_probs=42.9

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL  178 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL  178 (452)
                      +.+.+++.|. ..+.+.++|.-+|.|..+..+.+.   ...|+|+|+++.+++.|+++.
T Consensus        30 ~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~   84 (251)
T PRK10258         30 SADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKD   84 (251)
T ss_pred             HHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhC
Confidence            4566677775 346789999999999877776653   246999999999999998764

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=93.50  E-value=0.35  Score=50.89  Aligned_cols=80  Identities=9%  Similarity=0.088  Sum_probs=61.1

Q ss_pred             CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954          135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL  214 (452)
Q Consensus       135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~  214 (452)
                      -.++|+-.|.|-=+..++.+.++...|++.|++++|++.++++++....      .++++++.+...+   +...+    
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~---l~~~~----  112 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANV---LRYRN----  112 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHH---HHHhC----
Confidence            4899999999999999998865556799999999999999998876532      2567777766544   33221    


Q ss_pred             ccCccEEEEccCCCc
Q 012954          215 RSGVDAILMDLGMSS  229 (452)
Q Consensus       215 ~~~VDGILfDLGvSS  229 (452)
                       ..+|.|.+|= +-|
T Consensus       113 -~~fDvIdlDP-fGs  125 (374)
T TIGR00308       113 -RKFHVIDIDP-FGT  125 (374)
T ss_pred             -CCCCEEEeCC-CCC
Confidence             3599999996 544

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=93.41  E-value=0.51  Score=44.91  Aligned_cols=89  Identities=15%  Similarity=0.072  Sum_probs=61.4

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      |+.++-+.+.+. ..++..++|.-.|.|..+..+++. .  ..++++|.++.+++.|++++...+.       ++.++..
T Consensus        34 ~~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~iD~s~~~~~~a~~~~~~~~~-------~~~~~~~  102 (233)
T PRK05134         34 PLRLNYIREHAG-GLFGKRVLDVGCGGGILSESMARL-G--ADVTGIDASEENIEVARLHALESGL-------KIDYRQT  102 (233)
T ss_pred             HHHHHHHHHhcc-CCCCCeEEEeCCCCCHHHHHHHHc-C--CeEEEEcCCHHHHHHHHHHHHHcCC-------ceEEEec
Confidence            444555555554 346789999999999988877764 2  3599999999999999987765322       4556666


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEcc
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++..+.   ...     ...+|.|++..
T Consensus       103 ~~~~~~---~~~-----~~~fD~Ii~~~  122 (233)
T PRK05134        103 TAEELA---AEH-----PGQFDVVTCME  122 (233)
T ss_pred             CHHHhh---hhc-----CCCccEEEEhh
Confidence            665442   111     13699998754

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=93.20  E-value=0.48  Score=49.90  Aligned_cols=81  Identities=15%  Similarity=0.145  Sum_probs=58.7

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|+-.|.|.=+..++...+. ..|+++|+|+.|++.++++++..+.      .+.++++++...+   +.. .  
T Consensus        57 ~~~~vLDl~aGsG~~~l~~a~~~~~-~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~Da~~~---l~~-~--  123 (382)
T PRK04338         57 PRESVLDALSASGIRGIRYALETGV-EKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKDANAL---LHE-E--  123 (382)
T ss_pred             CCCEEEECCCcccHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhhHHHH---Hhh-c--
Confidence            3468999999999999988877653 4699999999999999998865432      1345666665432   321 1  


Q ss_pred             ccccCccEEEEc-cCCCc
Q 012954          213 ILRSGVDAILMD-LGMSS  229 (452)
Q Consensus       213 l~~~~VDGILfD-LGvSS  229 (452)
                         ..+|.|++| .|...
T Consensus       124 ---~~fD~V~lDP~Gs~~  138 (382)
T PRK04338        124 ---RKFDVVDIDPFGSPA  138 (382)
T ss_pred             ---CCCCEEEECCCCCcH
Confidence               259999999 55543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=93.19  E-value=0.43  Score=51.92  Aligned_cols=95  Identities=18%  Similarity=0.216  Sum_probs=70.0

Q ss_pred             CccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE
Q 012954          115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT  194 (452)
Q Consensus       115 ~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l  194 (452)
                      .|.|.++=..-..+.  ..+.++||.-+|.|+|...+....|+.. ++|+|+....+..+..+....+.      .++.+
T Consensus       331 ~~~p~~~i~~eklf~--~~~p~~lEIG~G~G~~~~~~A~~~p~~~-~iGiE~~~~~~~~~~~~~~~~~l------~N~~~  401 (506)
T PRK01544        331 NELPKYLFSKEKLVN--EKRKVFLEIGFGMGEHFINQAKMNPDAL-FIGVEVYLNGVANVLKLAGEQNI------TNFLL  401 (506)
T ss_pred             hhhhhhCCCHHHhCC--CCCceEEEECCCchHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHcCC------CeEEE
Confidence            467776644433332  3567999999999999999999999964 89999999999888776655432      37778


Q ss_pred             EccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          195 FAKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       195 i~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +..+...+..++.       ...+|.|.+.+
T Consensus       402 ~~~~~~~~~~~~~-------~~sv~~i~i~F  425 (506)
T PRK01544        402 FPNNLDLILNDLP-------NNSLDGIYILF  425 (506)
T ss_pred             EcCCHHHHHHhcC-------cccccEEEEEC
Confidence            8877666655543       23688888765

>PHA03412 putative methyltransferase; Provisional

Probab=93.07  E-value=0.23  Score=49.48  Aligned_cols=88  Identities=13%  Similarity=0.100  Sum_probs=58.4

Q ss_pred             cccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCC--CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceE
Q 012954          116 HIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHP--ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKT  192 (452)
Q Consensus       116 H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p--~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~  192 (452)
                      .+|. |...++...   ..++.++|...|.|.=+.+++++.+  ....|+|+|+|+.|++.|++.+.           ++
T Consensus        34 fTP~~iAr~~~i~~---~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------~~   99 (241)
T PHA03412         34 FTPIGLARDFTIDA---CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------EA   99 (241)
T ss_pred             CCCHHHHHHHHHhc---cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------CC
Confidence            5555 334443222   2468999999999988888887643  23479999999999999987542           35


Q ss_pred             EEEccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          193 HTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       193 ~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      .++++++....     .     ...+|.||.|==|
T Consensus       100 ~~~~~D~~~~~-----~-----~~~FDlIIsNPPY  124 (241)
T PHA03412        100 TWINADALTTE-----F-----DTLFDMAISNPPF  124 (241)
T ss_pred             EEEEcchhccc-----c-----cCCccEEEECCCC
Confidence            56676665321     0     1257888776443

>TIGR00452 methyltransferase, putative

Probab=92.99  E-value=0.52  Score=48.47  Aligned_cols=54  Identities=19%  Similarity=0.190  Sum_probs=42.6

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHH
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR  175 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak  175 (452)
                      +..+.++..+. ..+++.++|..+|.|.|+..++...+  ..|+|+|..+..+..++
T Consensus       108 ~~~~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~  161 (314)
T TIGR00452       108 IKWDRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFE  161 (314)
T ss_pred             HHHHHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHH
Confidence            34556777775 35789999999999999999887643  36999999999887653

Known examples to date are restricted to the proteobacteria.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=92.92  E-value=0.45  Score=53.73  Aligned_cols=79  Identities=14%  Similarity=0.021  Sum_probs=59.3

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      .+..++|+-.|.|+=|..++.. + ...|+++|+++.|++.|+++++..+.+    ..++++++++.-+   ++...+  
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~---~l~~~~--  606 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLA---WLKEAR--  606 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHH---HHHHcC--
Confidence            4789999999999999998874 3 246999999999999999988765431    1368888877432   333222  


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                         ..+|.|++|-
T Consensus       607 ---~~fDlIilDP  616 (702)
T PRK11783        607 ---EQFDLIFIDP  616 (702)
T ss_pred             ---CCcCEEEECC
Confidence               3699999993

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=92.85  E-value=0.54  Score=48.33  Aligned_cols=60  Identities=12%  Similarity=0.102  Sum_probs=47.4

Q ss_pred             cchHHHHhhccCC--CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          119 VMLGEVLDVFSSS--RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       119 VLl~Evl~~L~~~--~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      .+++.+++++...  .++..++|.-.|.|.-+..+++.   ...|+|+|+.+.+++.|+++....
T Consensus       128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~  189 (315)
T PLN02585        128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEA  189 (315)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhc
Confidence            4567788887521  25679999999999888888864   246999999999999999987653

>PRK03612 spermidine synthase; Provisional

Probab=92.69  E-value=0.6  Score=50.92  Aligned_cols=83  Identities=20%  Similarity=0.245  Sum_probs=58.2

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHH--HHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA--HLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~--rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      +.+.++|.=.|.|+-+..+++ ++...++.++|+|+++++.|++  .+...... .....|+++++++..+   ++... 
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~-~~~dprv~vi~~Da~~---~l~~~-  370 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGG-ALDDPRVTVVNDDAFN---WLRKL-  370 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhcc-ccCCCceEEEEChHHH---HHHhC-
Confidence            456899999999999999996 5554579999999999999998  34332110 0012478888776543   34332 


Q ss_pred             ccccccCccEEEEcc
Q 012954          211 ENILRSGVDAILMDL  225 (452)
Q Consensus       211 ~~l~~~~VDGILfDL  225 (452)
                          ...+|.|+.|+
T Consensus       371 ----~~~fDvIi~D~  381 (521)
T PRK03612        371 ----AEKFDVIIVDL  381 (521)
T ss_pred             ----CCCCCEEEEeC
Confidence                24799999994

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=92.69  E-value=0.68  Score=47.23  Aligned_cols=74  Identities=15%  Similarity=0.152  Sum_probs=59.9

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ++++++-|. .+||..++|.=+|.||=+....++++  .+|+|++..++..+.+++++...+..     .++++...++.
T Consensus        61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~-----~~v~v~l~d~r  132 (283)
T COG2230          61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLE-----DNVEVRLQDYR  132 (283)
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCC-----cccEEEecccc
Confidence            667788887 68999999999999999999998884  46999999999999999998876652     25666555554


Q ss_pred             hH
Q 012954          201 HI  202 (452)
Q Consensus       201 ~i  202 (452)
                      .+
T Consensus       133 d~  134 (283)
T COG2230         133 DF  134 (283)
T ss_pred             cc
Confidence            44

>PLN02366 spermidine synthase

Probab=92.56  E-value=0.7  Score=47.34  Aligned_cols=95  Identities=16%  Similarity=0.192  Sum_probs=64.4

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      +...|.|.+.       . + +...++|.=.|.|+=...+++ +++..+|..+|+|+..++.|++.+......  ....|
T Consensus        79 e~l~h~~l~~-------~-~-~pkrVLiIGgG~G~~~rellk-~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--~~dpR  146 (308)
T PLN02366         79 EMITHLPLCS-------I-P-NPKKVLVVGGGDGGVLREIAR-HSSVEQIDICEIDKMVIDVSKKFFPDLAVG--FDDPR  146 (308)
T ss_pred             HHHHHHHHhh-------C-C-CCCeEEEEcCCccHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhhhhhccc--cCCCc
Confidence            4555666542       2 2 346789999999988888885 466567999999999999999987543210  01248


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++++.++-..   ++.+..    ...+|.|+.|+
T Consensus       147 v~vi~~Da~~---~l~~~~----~~~yDvIi~D~  173 (308)
T PLN02366        147 VNLHIGDGVE---FLKNAP----EGTYDAIIVDS  173 (308)
T ss_pred             eEEEEChHHH---HHhhcc----CCCCCEEEEcC
Confidence            8888776433   333321    13699999986

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=92.46  E-value=0.63  Score=48.61  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=78.1

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      -|=|..|=...+....+|.+++|+=.|-|.-|..++..-.. . |+|+|+.|.|++..++.++-..-     ..++..++
T Consensus       172 sprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~-~-V~A~diNP~A~~~L~eNi~LN~v-----~~~v~~i~  244 (341)
T COG2520         172 SPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRP-K-VYAIDINPDAVEYLKENIRLNKV-----EGRVEPIL  244 (341)
T ss_pred             CCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCc-e-EEEEecCHHHHHHHHHHHHhcCc-----cceeeEEe
Confidence            45577776666654567999999999999999998866333 3 99999999999999998765433     23577888


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCC
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP  235 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~  235 (452)
                      +.-.++...+         ..+|-|+|.+=.|++|+...
T Consensus       245 gD~rev~~~~---------~~aDrIim~~p~~a~~fl~~  274 (341)
T COG2520         245 GDAREVAPEL---------GVADRIIMGLPKSAHEFLPL  274 (341)
T ss_pred             ccHHHhhhcc---------ccCCEEEeCCCCcchhhHHH
Confidence            8776653222         36999999999988887654

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=92.06  E-value=0.67  Score=43.75  Aligned_cols=58  Identities=16%  Similarity=0.231  Sum_probs=46.3

Q ss_pred             EEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          136 SFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       136 iyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      .++|.-.|.|+.+..+++.++. ..++|+|.++++++.|++++...+.     ..+++++..++
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~-~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~   59 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDS   59 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEeccc
Confidence            5799999999999999988866 4699999999999999998866433     23566666554

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=92.02  E-value=0.54  Score=41.05  Aligned_cols=45  Identities=16%  Similarity=0.090  Sum_probs=38.3

Q ss_pred             EEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          136 SFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       136 iyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      +++|+-.|.|-+|..+++..+. +++++||-||.+++.+++.++..
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~~~~n   45 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEENVKLN   45 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHHHHHc
Confidence            4899999999998888877655 47999999999999998877654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>TIGR00417 speE spermidine synthase

Probab=91.98  E-value=1.4  Score=43.76  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=55.5

Q ss_pred             CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954          135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL  214 (452)
Q Consensus       135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~  214 (452)
                      ..++|.-.|.|+=+..+|+..+. ..+.++|+|+++++.|++.+......  ....+++++.++..   +++...     
T Consensus        74 ~~VL~iG~G~G~~~~~ll~~~~~-~~v~~veid~~vi~~a~~~~~~~~~~--~~~~~v~i~~~D~~---~~l~~~-----  142 (270)
T TIGR00417        74 KHVLVIGGGDGGVLREVLKHKSV-EKATLVDIDEKVIELSKKFLPSLAGS--YDDPRVDLQIDDGF---KFLADT-----  142 (270)
T ss_pred             CEEEEEcCCchHHHHHHHhCCCc-ceEEEEeCCHHHHHHHHHHhHhhccc--ccCCceEEEECchH---HHHHhC-----
Confidence            48899999999988888876533 56999999999999999877543210  01236777664432   334332     


Q ss_pred             ccCccEEEEcc
Q 012954          215 RSGVDAILMDL  225 (452)
Q Consensus       215 ~~~VDGILfDL  225 (452)
                      ...+|.|+.|.
T Consensus       143 ~~~yDvIi~D~  153 (270)
T TIGR00417       143 ENTFDVIIVDS  153 (270)
T ss_pred             CCCccEEEEeC
Confidence            13699999884

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=91.91  E-value=0.42  Score=51.20  Aligned_cols=109  Identities=19%  Similarity=0.267  Sum_probs=81.4

Q ss_pred             cCCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          101 KDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       101 ~~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      -+|-++-|+.|....-.|||      .|. ++||..++|++.--||-|++|.+-..+.|.|||.|.-..-+..-++.+..
T Consensus       216 ~e~lag~~~LQ~~sS~Lpv~------aL~-Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r  288 (460)
T KOG1122|consen  216 PEYLAGHYMLQNASSFLPVM------ALD-PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR  288 (460)
T ss_pred             hhhcccceeeccCcccceee------ecC-CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH
Confidence            46788889999999999998      465 68999999999999999999999999999999999998888887777777


Q ss_pred             hccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          181 LLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       181 ~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      .+-+      +.  +..|+....  +.+ +  .....+|-||+|==+|-
T Consensus       289 lGv~------nt--iv~n~D~~e--f~~-~--~~~~~fDRVLLDAPCSG  324 (460)
T KOG1122|consen  289 LGVT------NT--IVSNYDGRE--FPE-K--EFPGSFDRVLLDAPCSG  324 (460)
T ss_pred             hCCC------ce--EEEccCccc--ccc-c--ccCcccceeeecCCCCC
Confidence            6532      22  334444320  100 0  01125888888876664

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=91.85  E-value=0.5  Score=50.17  Aligned_cols=51  Identities=16%  Similarity=0.216  Sum_probs=41.0

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA  176 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~  176 (452)
                      ..+++.+. ..+++.++|.-+|.|.++..+.+..   .+|+|+|.++.+++.+++
T Consensus        27 ~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~   77 (475)
T PLN02336         27 PEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNES   77 (475)
T ss_pred             hHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHH
Confidence            34556665 3467899999999999999988763   469999999999998765

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=91.70  E-value=0.25  Score=48.95  Aligned_cols=64  Identities=22%  Similarity=0.315  Sum_probs=39.9

Q ss_pred             CCcccc-----chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-C-CCCCEEEEEeCCHHHHHHHHHHHh
Q 012954          114 SSHIPV-----MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-H-PELKLHIGVDVDPSALAKARAHLN  179 (452)
Q Consensus       114 ~~H~PV-----Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~-p~~g~VigfDrD~~Ai~~Ak~rL~  179 (452)
                      +.-.||     +.+.++++|. ....-..-|+++|+| |-.-+|-- + .....|||-|+|++|++.|+++|.
T Consensus        28 ~p~FPVRLAsEi~qR~l~~l~-~~~p~tLyDPCCG~g-yLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   28 FPAFPVRLASEIFQRALHYLE-GKGPYTLYDPCCGSG-YLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             B----HHHHHHHHHHHHCTSS-S-S-EEEEETT-TTS-HHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHhhc-CCCCeeeeccCCCcc-HHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            446788     4455566664 223346789999998 66666554 2 235569999999999999998763

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=91.57  E-value=0.51  Score=46.63  Aligned_cols=80  Identities=14%  Similarity=0.237  Sum_probs=65.6

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      .++-+-|-+++.+++.+. ..++..+||.=-|.|--|.+|++..   .+|+++++|+...+.-++++..        ..+
T Consensus        10 QnFL~~~~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~--------~~~   77 (262)
T PF00398_consen   10 QNFLVDPNIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS--------NPN   77 (262)
T ss_dssp             SSEEEHHHHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT--------CSS
T ss_pred             cCeeCCHHHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh--------ccc
Confidence            566677889999999997 4588999999999999999999986   5799999999988877765542        238


Q ss_pred             EEEEccCcchHH
Q 012954          192 THTFAKNFRHIK  203 (452)
Q Consensus       192 ~~li~~nF~~i~  203 (452)
                      +++++++|-.++
T Consensus        78 ~~vi~~D~l~~~   89 (262)
T PF00398_consen   78 VEVINGDFLKWD   89 (262)
T ss_dssp             EEEEES-TTTSC
T ss_pred             ceeeecchhccc
Confidence            999999987643

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=91.44  E-value=1.1  Score=46.41  Aligned_cols=84  Identities=21%  Similarity=0.120  Sum_probs=54.0

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh-ccCCCCCCceEEEEc-cCcchHHHHHhhhc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL-LHGQAHPHLKTHTFA-KNFRHIKSVLGQID  210 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~-~~~~~~~~~r~~li~-~nF~~i~~~L~~~~  210 (452)
                      ++..++|.-.|.|+=...+..+.+. ..++|+|+|+.|++.|++.++.. ..     ..++.+++ .+-.++..-+... 
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~-~~~~atDId~~Al~~A~~Nv~~Np~l-----~~~I~~~~~~~~~~i~~~i~~~-  186 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYG-WRFVGSDIDPQALASAQAIISANPGL-----NGAIRLRLQKDSKAIFKGIIHK-  186 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhccCC-----cCcEEEEEccchhhhhhccccc-
Confidence            4578999999988666666666665 46999999999999999988765 22     23666643 3323322211100 


Q ss_pred             ccccccCccEEEEccCC
Q 012954          211 ENILRSGVDAILMDLGM  227 (452)
Q Consensus       211 ~~l~~~~VDGILfDLGv  227 (452)
                          ...+|.||.|==|
T Consensus       187 ----~~~fDlivcNPPf  199 (321)
T PRK11727        187 ----NERFDATLCNPPF  199 (321)
T ss_pred             ----CCceEEEEeCCCC
Confidence                1357777766444

>PRK01581 speE spermidine synthase; Validated

Probab=91.12  E-value=1  Score=47.54  Aligned_cols=82  Identities=20%  Similarity=0.121  Sum_probs=54.9

Q ss_pred             CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHH--HHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA--HLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~--rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      ...+++.=.|.|+-...+|+ +++..+|.++|+|+++++.|++  .|..+... .....|++++.++-..   ++...  
T Consensus       151 PkrVLIIGgGdG~tlrelLk-~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~-~~~DpRV~vvi~Da~~---fL~~~--  223 (374)
T PRK01581        151 PKRVLILGGGDGLALREVLK-YETVLHVDLVDLDGSMINMARNVPELVSLNKS-AFFDNRVNVHVCDAKE---FLSSP--  223 (374)
T ss_pred             CCEEEEECCCHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhccccchhccc-cCCCCceEEEECcHHH---HHHhc--
Confidence            35788888898988888886 4555679999999999999996  23221110 0012478887765443   34432  


Q ss_pred             cccccCccEEEEcc
Q 012954          212 NILRSGVDAILMDL  225 (452)
Q Consensus       212 ~l~~~~VDGILfDL  225 (452)
                         ...+|.|++|+
T Consensus       224 ---~~~YDVIIvDl  234 (374)
T PRK01581        224 ---SSLYDVIIIDF  234 (374)
T ss_pred             ---CCCccEEEEcC
Confidence               23699999994

>TIGR00478 tly hemolysin TlyA family protein

Probab=91.08  E-value=0.61  Score=45.88  Aligned_cols=51  Identities=25%  Similarity=0.308  Sum_probs=41.7

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHH
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAK  173 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~  173 (452)
                      |.++++.+....++.+++|...|.||.|..+++. + .++|+|+|..+..+..
T Consensus        63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~  113 (228)
T TIGR00478        63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAE  113 (228)
T ss_pred             HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHH
Confidence            6778888763346789999999999999999986 3 3579999999987754

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=90.78  E-value=0.63  Score=45.93  Aligned_cols=94  Identities=19%  Similarity=0.320  Sum_probs=58.8

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      +...|.|.++..        +|..+.|= =.|.||-...+++. ++...+..+|+|+..++.|++.+......  ....|
T Consensus        64 e~l~h~~~~~~~--------~p~~VLii-GgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r  131 (246)
T PF01564_consen   64 EMLVHPPLLLHP--------NPKRVLII-GGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEG--LDDPR  131 (246)
T ss_dssp             HHHHHHHHHHSS--------ST-EEEEE-ESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTT
T ss_pred             HHHhhhHhhcCC--------CcCceEEE-cCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccc--cCCCc
Confidence            445577777543        24444433 37888888888854 44457999999999999999876543211  01247


Q ss_pred             EEEEccCcchHHHHHhhhccccccc-CccEEEEcc
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRS-GVDAILMDL  225 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~-~VDGILfDL  225 (452)
                      ++++.++=.   .+|++..     . .+|.|+.|+
T Consensus       132 ~~i~~~Dg~---~~l~~~~-----~~~yDvIi~D~  158 (246)
T PF01564_consen  132 VRIIIGDGR---KFLKETQ-----EEKYDVIIVDL  158 (246)
T ss_dssp             EEEEESTHH---HHHHTSS-----ST-EEEEEEES
T ss_pred             eEEEEhhhH---HHHHhcc-----CCcccEEEEeC
Confidence            777765532   3444432     3 699999998

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=90.75  E-value=2.4  Score=40.93  Aligned_cols=95  Identities=14%  Similarity=0.168  Sum_probs=64.5

Q ss_pred             hHHH-HhhccC-CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          121 LGEV-LDVFSS-SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       121 l~Ev-l~~L~~-~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      ++|. ..+|.. .-+|..++|+=.|.|+=...=|++.-  .+++.+|+|..|+...+++++..+..     .++.+++.+
T Consensus        29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~-----~~~~~~~~d  101 (187)
T COG0742          29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLE-----GEARVLRND  101 (187)
T ss_pred             HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCc-----cceEEEeec
Confidence            4444 455543 14789999999999988888887743  46899999999999999998887531     355555543


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      =.   .+|...+.   ...+|.|.+|==|-
T Consensus       102 a~---~~L~~~~~---~~~FDlVflDPPy~  125 (187)
T COG0742         102 AL---RALKQLGT---REPFDLVFLDPPYA  125 (187)
T ss_pred             HH---HHHHhcCC---CCcccEEEeCCCCc
Confidence            22   34444321   12499999885443

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=90.17  E-value=0.96  Score=44.66  Aligned_cols=45  Identities=24%  Similarity=0.330  Sum_probs=38.7

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHH
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPEL--KLHIGVDVDPSALAKARAH  177 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~--g~VigfDrD~~Ai~~Ak~r  177 (452)
                      +...++|.=+|.|.++..+.+.+++.  ..++|+|+.+.+++.|.++
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~  131 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR  131 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh
Confidence            55789999999999999999887643  2689999999999999765

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.17  E-value=0.75  Score=44.87  Aligned_cols=63  Identities=14%  Similarity=0.070  Sum_probs=47.2

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      .|+.+-.....++..+||.-.--||+|+...++.+..++|+|+|+||-..         .        ..+.+++++|.+
T Consensus        34 ~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---------~--------~~V~~iq~d~~~   96 (205)
T COG0293          34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------I--------PGVIFLQGDITD   96 (205)
T ss_pred             HHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc---------C--------CCceEEeeeccC
Confidence            33333333335789999999999999999999988878899999997533         1        247777777764

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=90.05  E-value=0.4  Score=47.86  Aligned_cols=102  Identities=18%  Similarity=0.220  Sum_probs=57.6

Q ss_pred             ccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhC-------CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCC
Q 012954          117 IPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAH-------PELKLHIGVDVDPSALAKARAHLNSLLHGQAHP  188 (452)
Q Consensus       117 ~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~-------p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~  188 (452)
                      +|. +.+-+++.+. +.++..++|-++|.||=-.++++.+       .. ..++|+|+|+.++..|+-++.-.+..    
T Consensus        30 TP~~i~~l~~~~~~-~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~-~~i~G~ei~~~~~~la~~nl~l~~~~----  103 (311)
T PF02384_consen   30 TPREIVDLMVKLLN-PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKE-INIYGIEIDPEAVALAKLNLLLHGID----  103 (311)
T ss_dssp             --HHHHHHHHHHHT-T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCC-EEEEEEES-HHHHHHHHHHHHHTTHH----
T ss_pred             hHHHHHHHHHhhhh-ccccceeechhhhHHHHHHHHHHhhccccccccc-ceeEeecCcHHHHHHHHhhhhhhccc----
Confidence            444 2444445554 5677789999999999888877643       33 46999999999999998765332221    


Q ss_pred             CceEEEEccC-cchHHHHHhhhcccccccCccEEEEccCCCccCC
Q 012954          189 HLKTHTFAKN-FRHIKSVLGQIDENILRSGVDAILMDLGMSSMQV  232 (452)
Q Consensus       189 ~~r~~li~~n-F~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QL  232 (452)
                      .....+.+++ |..-. ..       ....+|.||.|-=++..+.
T Consensus       104 ~~~~~i~~~d~l~~~~-~~-------~~~~~D~ii~NPPf~~~~~  140 (311)
T PF02384_consen  104 NSNINIIQGDSLENDK-FI-------KNQKFDVIIGNPPFGSKEW  140 (311)
T ss_dssp             CBGCEEEES-TTTSHS-CT-------ST--EEEEEEE--CTCES-
T ss_pred             cccccccccccccccc-cc-------cccccccccCCCCcccccc
Confidence            1122344443 32210 00       0246999999988887755

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=89.63  E-value=0.061  Score=44.29  Aligned_cols=44  Identities=32%  Similarity=0.471  Sum_probs=36.2

Q ss_pred             EEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhc
Q 012954          138 VDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLL  182 (452)
Q Consensus       138 VDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~  182 (452)
                      +|.=.|.|.-+..|++.++. .+++|+|+++.+++.|++++....
T Consensus         1 LdiGcG~G~~~~~l~~~~~~-~~~~~~D~s~~~l~~a~~~~~~~~   44 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPD-ARYTGVDISPSMLERARERLAELG   44 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-E-EEEEEEESSSSTTSTTCCCHHHCT
T ss_pred             CEeCccChHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcC
Confidence            47778999999999999866 579999999999999998887754

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK04148 hypothetical protein; Provisional

Probab=89.62  E-value=1.2  Score=40.78  Aligned_cols=51  Identities=14%  Similarity=0.160  Sum_probs=38.9

Q ss_pred             HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH
Q 012954          124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAH  177 (452)
Q Consensus       124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~r  177 (452)
                      +.+.+. ...+..++|.=+|.|.+-...|.+.+.  .|+|+|+++.|++.++++
T Consensus         8 l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~   58 (134)
T PRK04148          8 IAENYE-KGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL   58 (134)
T ss_pred             HHHhcc-cccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh
Confidence            344443 234578999999999867777777653  599999999999998775

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=89.03  E-value=1.1  Score=46.97  Aligned_cols=90  Identities=22%  Similarity=0.242  Sum_probs=61.6

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc-C
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK-N  198 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~-n  198 (452)
                      +.-++-+|+-.++|..++|==+|.||   .+.+. +-+ .++||.|+|..++.-|+.+|+.|+-.      .+.++.. +
T Consensus       185 lAR~mVNLa~v~~G~~vlDPFcGTGg---iLiEagl~G-~~viG~Did~~mv~gak~Nl~~y~i~------~~~~~~~~D  254 (347)
T COG1041         185 LARAMVNLARVKRGELVLDPFCGTGG---ILIEAGLMG-ARVIGSDIDERMVRGAKINLEYYGIE------DYPVLKVLD  254 (347)
T ss_pred             HHHHHHHHhccccCCEeecCcCCccH---HHHhhhhcC-ceEeecchHHHHHhhhhhhhhhhCcC------ceeEEEecc
Confidence            56666777666799999999999995   33333 333 47999999999999999999988521      2333332 3


Q ss_pred             cchHHHHHhhhcccccccCccEEEEc--cCCCc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMD--LGMSS  229 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfD--LGvSS  229 (452)
                      =.+++  |       ..+.||+|+-|  -|.||
T Consensus       255 a~~lp--l-------~~~~vdaIatDPPYGrst  278 (347)
T COG1041         255 ATNLP--L-------RDNSVDAIATDPPYGRST  278 (347)
T ss_pred             cccCC--C-------CCCccceEEecCCCCccc
Confidence            33333  2       22359999987  34444

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=88.97  E-value=3.6  Score=42.50  Aligned_cols=96  Identities=19%  Similarity=0.166  Sum_probs=68.6

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCC---CCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhh
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPE---LKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQI  209 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~---~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~  209 (452)
                      ++..+||.=.|+|-++..+|+.+..   ...++++|+..++|+.+.++|..-..    +...+.-+++.|.....++...
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~----p~l~v~~l~gdy~~~l~~l~~~  151 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF----SHVRCAGLLGTYDDGLAWLKRP  151 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC----CCeEEEEEEecHHHHHhhcccc
Confidence            5668999999999999999998642   24699999999999999998872111    1346777999998877766431


Q ss_pred             cccccccCccEEEEccCCCccCCCCCC
Q 012954          210 DENILRSGVDAILMDLGMSSMQVNNPE  236 (452)
Q Consensus       210 ~~~l~~~~VDGILfDLGvSS~QLDd~~  236 (452)
                      ..   ..... ++|=||-|-.-++.++
T Consensus       152 ~~---~~~~r-~~~flGSsiGNf~~~e  174 (319)
T TIGR03439       152 EN---RSRPT-TILWLGSSIGNFSRPE  174 (319)
T ss_pred             cc---cCCcc-EEEEeCccccCCCHHH
Confidence            00   11233 5666888776666544

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=88.46  E-value=1.7  Score=38.81  Aligned_cols=49  Identities=20%  Similarity=0.257  Sum_probs=39.2

Q ss_pred             CCCCEEEEEccCCChhHHHHHHh-----CCCCCEEEEEeCCHHHHHHHHHHHhhhc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRA-----HPELKLHIGVDVDPSALAKARAHLNSLL  182 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~-----~p~~g~VigfDrD~~Ai~~Ak~rL~~~~  182 (452)
                      .+...+||.-.|.| |-..+|..     .++ -.|+|+|.++..++.+.++.+...
T Consensus        24 ~~~~~vvD~GsG~G-yLs~~La~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   24 KRCITVVDLGSGKG-YLSRALAHLLCNSSPN-LRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCCEEEEeCCChh-HHHHHHHHHHHhcCCC-CeEEEEECCcHHHHHHHHHHHHhc
Confidence            46779999999999 77776666     444 469999999999999988776653

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=88.33  E-value=0.29  Score=47.99  Aligned_cols=42  Identities=21%  Similarity=0.471  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHhhhc
Q 012954          344 KTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIID  385 (452)
Q Consensus       344 ~~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~  385 (452)
                      ..+.++|..+..+|||||+++|+-|+.-+-.+++.++.-+.+
T Consensus       130 ~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~  171 (233)
T PF01209_consen  130 PDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFK  171 (233)
T ss_dssp             SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH---
T ss_pred             CCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeec
Confidence            346789999999999999999999999999999988776544

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=87.99  E-value=1.7  Score=49.16  Aligned_cols=53  Identities=17%  Similarity=0.199  Sum_probs=39.4

Q ss_pred             EEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEc
Q 012954          160 LHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       160 ~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      +++|+|+|+.|++.|+++++.++.     ..++++.++++.++.....       ...+|.|+.|
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~-----~~~i~~~~~D~~~~~~~~~-------~~~~d~IvtN  310 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGV-----AELITFEVKDVADLKNPLP-------KGPTGLVISN  310 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEeCChhhcccccc-------cCCCCEEEEC
Confidence            599999999999999999987764     2367888888877532111       1247888887

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=87.76  E-value=1.2  Score=44.36  Aligned_cols=57  Identities=25%  Similarity=0.374  Sum_probs=42.3

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      .|.+.... ..+-..++|.-+|-|.-|..+.+++|.. .|.|||-++++|+.|+++|-+
T Consensus        20 ~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A-~i~GiDsS~~Mla~Aa~rlp~   76 (257)
T COG4106          20 RDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDA-VITGIDSSPAMLAKAAQRLPD   76 (257)
T ss_pred             HHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCC-eEeeccCCHHHHHHHHHhCCC
Confidence            34444443 3456789999999994444445558874 699999999999999988743

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=87.40  E-value=1.9  Score=43.81  Aligned_cols=80  Identities=18%  Similarity=0.242  Sum_probs=56.3

Q ss_pred             CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954          135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL  214 (452)
Q Consensus       135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~  214 (452)
                      ..++=.=.|.||=+.++|+..+ ..+++.+|+|++.++.|++.|.......  ...|++++.+   +-.+++....    
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~--~dpRv~i~i~---Dg~~~v~~~~----  147 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGA--DDPRVEIIID---DGVEFLRDCE----  147 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCccccc--CCCceEEEec---cHHHHHHhCC----
Confidence            4555566899999999997665 4579999999999999999886653110  1247776543   3334555432    


Q ss_pred             ccCccEEEEcc
Q 012954          215 RSGVDAILMDL  225 (452)
Q Consensus       215 ~~~VDGILfDL  225 (452)
                       .++|.|+.|.
T Consensus       148 -~~fDvIi~D~  157 (282)
T COG0421         148 -EKFDVIIVDS  157 (282)
T ss_pred             -CcCCEEEEcC
Confidence             3699999995

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=87.35  E-value=0.81  Score=48.59  Aligned_cols=98  Identities=15%  Similarity=0.101  Sum_probs=70.9

Q ss_pred             CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          131 SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       131 ~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      +.+++.++|.+.-.|--|..+..-..+.++++|||+|.+=.+.-++.|...+.      ..+..+.+.|-+. -+-..+ 
T Consensus       211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~------~~~~~~~~df~~t-~~~~~~-  282 (413)
T KOG2360|consen  211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV------SIVESVEGDFLNT-ATPEKF-  282 (413)
T ss_pred             CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC------CccccccccccCC-CCcccc-
Confidence            56889999999999987777776666678999999999988877777766543      2455667777664 111111 


Q ss_pred             ccccccCccEEEEccCCCccCCCCCCCCcccCCCCCCcccCCCC
Q 012954          211 ENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQ  254 (452)
Q Consensus       211 ~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~  254 (452)
                           ..|..||.|=|+|-             +-=+.||+|++.
T Consensus       283 -----~~v~~iL~DpscSg-------------Sgm~~r~~~~~~  308 (413)
T KOG2360|consen  283 -----RDVTYILVDPSCSG-------------SGMVSRQDEDPG  308 (413)
T ss_pred             -----cceeEEEeCCCCCC-------------CccccceeeccC
Confidence                 35889999999873             112578888875

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=86.58  E-value=5.2  Score=41.26  Aligned_cols=56  Identities=20%  Similarity=0.220  Sum_probs=45.6

Q ss_pred             HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      .++.|. ...++.++|.-+|+|==+..+++..|. ..|.-+|+|..|++.|++.++..
T Consensus       150 Ll~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~N  205 (300)
T COG2813         150 LLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAAN  205 (300)
T ss_pred             HHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHHc
Confidence            355664 345679999999999777777777775 56999999999999999988764

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=86.09  E-value=1  Score=37.60  Aligned_cols=70  Identities=13%  Similarity=0.022  Sum_probs=25.4

Q ss_pred             CChhHHHHHHhCCCCC--EEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEE
Q 012954          144 AAGHSSAIIRAHPELK--LHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAI  221 (452)
Q Consensus       144 ~GGHS~aIL~~~p~~g--~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGI  221 (452)
                      .|.=|..|++.+.+.+  +++++|.++. .+.+.+.+++.+.     ..+++++++++.+.-..+.       ...+|.|
T Consensus         7 ~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----~~~~~~~~g~s~~~l~~~~-------~~~~dli   73 (106)
T PF13578_consen    7 SGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----SDRVEFIQGDSPDFLPSLP-------DGPIDLI   73 (106)
T ss_dssp             --------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHH-------H--EEEE
T ss_pred             cccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----CCeEEEEEcCcHHHHHHcC-------CCCEEEE
Confidence            5655566666666554  7999999995 2223333332222     2379999999976533332       1369999


Q ss_pred             EEccC
Q 012954          222 LMDLG  226 (452)
Q Consensus       222 LfDLG  226 (452)
                      ++|-+
T Consensus        74 ~iDg~   78 (106)
T PF13578_consen   74 FIDGD   78 (106)
T ss_dssp             EEES-
T ss_pred             EECCC
Confidence            99975

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=85.99  E-value=2.8  Score=43.16  Aligned_cols=98  Identities=15%  Similarity=0.218  Sum_probs=64.3

Q ss_pred             hHHHHhhccCC--CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          121 LGEVLDVFSSS--RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       121 l~Evl~~L~~~--~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      +.-|++.++..  -.+...+|...|.|-=|..+|..+|. ++++|+|+.+.|+..|.++-+.+..     ..++..+|-.
T Consensus       134 V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~-~~v~AiD~S~~Ai~La~eN~qr~~l-----~g~i~v~~~~  207 (328)
T KOG2904|consen  134 VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQ-CTVTAIDVSKAAIKLAKENAQRLKL-----SGRIEVIHNI  207 (328)
T ss_pred             HHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCC-ceEEEEeccHHHHHHHHHHHHHHhh-----cCceEEEecc
Confidence            44566666421  13458999999999999999999995 6799999999999999987766643     2366655433


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      ++. +.+. ++.  +..+++|+++=|==|=
T Consensus       208 me~-d~~~-~~~--l~~~~~dllvsNPPYI  233 (328)
T KOG2904|consen  208 MES-DASD-EHP--LLEGKIDLLVSNPPYI  233 (328)
T ss_pred             ccc-cccc-ccc--cccCceeEEecCCCcc
Confidence            321 1111 110  1234677776554443

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=85.62  E-value=3  Score=44.32  Aligned_cols=54  Identities=15%  Similarity=0.146  Sum_probs=40.7

Q ss_pred             EEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          160 LHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       160 ~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      .+||+|+|+.+++.|+.+....+-     ...+++.+..+..+...+         ..+|.||.|.=|
T Consensus       256 ~~~G~Did~r~i~~Ak~NA~~AGv-----~d~I~f~~~d~~~l~~~~---------~~~gvvI~NPPY  309 (381)
T COG0116         256 IIYGSDIDPRHIEGAKANARAAGV-----GDLIEFKQADATDLKEPL---------EEYGVVISNPPY  309 (381)
T ss_pred             eEEEecCCHHHHHHHHHHHHhcCC-----CceEEEEEcchhhCCCCC---------CcCCEEEeCCCc
Confidence            488999999999999998877664     347888888888765433         247778876544

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=85.36  E-value=5.9  Score=37.17  Aligned_cols=75  Identities=15%  Similarity=0.093  Sum_probs=51.4

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      .+..++|...|.|.-+..+++..   ..++|+|.++.+++.+++++...+.      .++.+...++.++.   ...   
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~---~~~---  109 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVEDLA---EKG---  109 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhh---cCC---
Confidence            36789999999997666666542   3489999999999999987765321      14666666665432   111   


Q ss_pred             ccccCccEEEEc
Q 012954          213 ILRSGVDAILMD  224 (452)
Q Consensus       213 l~~~~VDGILfD  224 (452)
                        ...+|.|+..
T Consensus       110 --~~~~D~i~~~  119 (224)
T TIGR01983       110 --AKSFDVVTCM  119 (224)
T ss_pred             --CCCccEEEeh
Confidence              1368888864

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=85.31  E-value=3.4  Score=41.73  Aligned_cols=98  Identities=4%  Similarity=0.060  Sum_probs=75.1

Q ss_pred             cCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCc
Q 012954          111 QQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHL  190 (452)
Q Consensus       111 ~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~  190 (452)
                      +.|+-|-+-.++.+++... ..++..++..=-|-|.=|..+|++.   .+|+|+.+|+..++.-++++..+        .
T Consensus         9 GQnFL~d~~v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~--------~   76 (259)
T COG0030           9 GQNFLIDKNVIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPY--------D   76 (259)
T ss_pred             ccccccCHHHHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccc--------c
Confidence            3677787888999999998 4678999999999999999999875   35999999999999888776532        3


Q ss_pred             eEEEEccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          191 KTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       191 r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      +++++++++-.++  +.++      ...+-|+.||=|+
T Consensus        77 n~~vi~~DaLk~d--~~~l------~~~~~vVaNlPY~  106 (259)
T COG0030          77 NLTVINGDALKFD--FPSL------AQPYKVVANLPYN  106 (259)
T ss_pred             ceEEEeCchhcCc--chhh------cCCCEEEEcCCCc
Confidence            7999998875432  1110      0356788888663

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=84.83  E-value=3.3  Score=40.00  Aligned_cols=52  Identities=10%  Similarity=0.002  Sum_probs=38.6

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHH
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR  175 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak  175 (452)
                      .+.+.++.+. ..+++.++|.-+|.|-++..+.++ +-  .|+|+|+.+.|++.+.
T Consensus        22 ~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~-G~--~V~gvD~S~~Ai~~~~   73 (213)
T TIGR03840        22 LLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ-GH--RVLGVELSEIAVEQFF   73 (213)
T ss_pred             HHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC-CC--eEEEEeCCHHHHHHHH
Confidence            3445556553 236789999999999777777653 33  5999999999999763

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=84.49  E-value=7.3  Score=37.74  Aligned_cols=96  Identities=19%  Similarity=0.215  Sum_probs=55.2

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh-------ccCCCCCC
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL-------LHGQAHPH  189 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~-------~~~~~~~~  189 (452)
                      .|-.+.++++.+. ..++++|+|.=-|-|. .........+..+.+|+++++...+.|+..++.+       +..    .
T Consensus        27 ~~~~~~~il~~~~-l~~~dvF~DlGSG~G~-~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~----~  100 (205)
T PF08123_consen   27 SPEFVSKILDELN-LTPDDVFYDLGSGVGN-VVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR----P  100 (205)
T ss_dssp             HHHHHHHHHHHTT---TT-EEEEES-TTSH-HHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB------
T ss_pred             CHHHHHHHHHHhC-CCCCCEEEECCCCCCH-HHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc----c
Confidence            3456788888887 5789999999999994 3222222334566899999999998887644332       221    2


Q ss_pred             ceEEEEccCcchHHHHHhhhcccccccCccEEEEc
Q 012954          190 LKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       190 ~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      .++.+.+++|-+-+.. ...     ....|.|++|
T Consensus       101 ~~v~l~~gdfl~~~~~-~~~-----~s~AdvVf~N  129 (205)
T PF08123_consen  101 GKVELIHGDFLDPDFV-KDI-----WSDADVVFVN  129 (205)
T ss_dssp             -EEEEECS-TTTHHHH-HHH-----GHC-SEEEE-
T ss_pred             ccceeeccCccccHhH-hhh-----hcCCCEEEEe
Confidence            4788899999765421 111     1246777776

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=83.85  E-value=3.1  Score=41.72  Aligned_cols=62  Identities=23%  Similarity=0.327  Sum_probs=47.4

Q ss_pred             CCCCcccc-chHHHHhhccCCC-CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Q 012954          112 QQSSHIPV-MLGEVLDVFSSSR-TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA  176 (452)
Q Consensus       112 ~~~~H~PV-Ll~Evl~~L~~~~-~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~  176 (452)
                      ....|+-. |..-.++.|.-+. ..+.++|.-+|.| =|..+|+.-+  -..+|+|+.|.+++.|.+
T Consensus        27 sri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsG-LSg~vL~~~G--h~wiGvDiSpsML~~a~~   90 (270)
T KOG1541|consen   27 SRIVLIQAEMAERALELLALPGPKSGLILDIGCGSG-LSGSVLSDSG--HQWIGVDISPSMLEQAVE   90 (270)
T ss_pred             ceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCC-cchheeccCC--ceEEeecCCHHHHHHHHH
Confidence            34445544 7788888887321 1578999999999 8888887654  358999999999999976

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=83.34  E-value=1.5  Score=43.70  Aligned_cols=41  Identities=22%  Similarity=0.557  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHhhhc
Q 012954          345 TLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIID  385 (452)
Q Consensus       345 ~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~  385 (452)
                      ..+++|..+..+||||||++|+.|+.=+.-.+++++..+..
T Consensus       134 d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~  174 (238)
T COG2226         134 DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYF  174 (238)
T ss_pred             CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHH
Confidence            67889999999999999999999999999888877766543

>PLN02823 spermine synthase

Probab=83.29  E-value=5.4  Score=41.51  Aligned_cols=94  Identities=15%  Similarity=0.175  Sum_probs=60.2

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      +...|.|.+..        +.| ..++-.=.|.|+-...+|+..+. .+|..+|+|++.++.|++.+......  ....|
T Consensus        91 E~l~h~~l~~~--------~~p-k~VLiiGgG~G~~~re~l~~~~~-~~v~~VEiD~~vv~lar~~~~~~~~~--~~dpr  158 (336)
T PLN02823         91 ESLVHPALLHH--------PNP-KTVFIMGGGEGSTAREVLRHKTV-EKVVMCDIDQEVVDFCRKHLTVNREA--FCDKR  158 (336)
T ss_pred             HHHHhHHHhhC--------CCC-CEEEEECCCchHHHHHHHhCCCC-CeEEEEECCHHHHHHHHHhccccccc--ccCCc
Confidence            45556665532        223 35566666878778888875443 57999999999999999876432110  01247


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++++.++-.   ++|...     ...+|.|++|+
T Consensus       159 v~v~~~Da~---~~L~~~-----~~~yDvIi~D~  184 (336)
T PLN02823        159 LELIINDAR---AELEKR-----DEKFDVIIGDL  184 (336)
T ss_pred             eEEEEChhH---HHHhhC-----CCCccEEEecC
Confidence            888776543   244332     24699999997

>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A

Probab=82.88  E-value=0.33  Score=38.39  Aligned_cols=41  Identities=22%  Similarity=0.241  Sum_probs=29.5

Q ss_pred             HhcCChHHHHHHHHHhCCCcchHHHHHHHHHHHh-hCCCCcHHHHHHH
Q 012954          263 LNSWPDAEVGRVLREYGEESNWHLLQNKIVQARL-RGGLHSTGELVDL  309 (452)
Q Consensus       263 LN~~se~eL~~Ifr~YGEE~~A~rIA~aIv~~R~-~~~i~TT~eLa~i  309 (452)
                      ||+.|.+||..+-   |   -..+.|++||++|+ .+++.+..||.++
T Consensus         8 iN~as~~eL~~lp---g---i~~~~A~~Iv~~R~~~G~f~s~~dL~~v   49 (65)
T PF12836_consen    8 INTASAEELQALP---G---IGPKQAKAIVEYREKNGPFKSLEDLKEV   49 (65)
T ss_dssp             TTTS-HHHHHTST---T-----HHHHHHHHHHHHHH-S-SSGGGGGGS
T ss_pred             CccCCHHHHHHcC---C---CCHHHHHHHHHHHHhCcCCCCHHHHhhC
Confidence            6899999998762   1   35679999999995 5799999999864

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=81.11  E-value=1.4  Score=40.68  Aligned_cols=36  Identities=25%  Similarity=0.515  Sum_probs=26.8

Q ss_pred             HHHHHHHHhhcCCCeEEEEeec-----chhHHHHHHHHHhh
Q 012954          348 SSLHACFDCLAPGGRLGVISFH-----SLEDRIVKQTFLSI  383 (452)
Q Consensus       348 ~~L~~a~~~L~pGGRLvVISFH-----SLEDRIVK~~F~~~  383 (452)
                      .+|+++.++|+|||+|+|+.|.     --|-..|.+|+..+
T Consensus        73 ~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L  113 (140)
T PF06962_consen   73 KALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASL  113 (140)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence            4566777999999999999997     35667788777665

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PLN02672 methionine S-methyltransferase

Probab=80.98  E-value=4.8  Score=48.02  Aligned_cols=66  Identities=15%  Similarity=0.087  Sum_probs=50.0

Q ss_pred             CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccC----------CCCCCceEEEEccCcc
Q 012954          134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHG----------QAHPHLKTHTFAKNFR  200 (452)
Q Consensus       134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~----------~~~~~~r~~li~~nF~  200 (452)
                      +..++|.-.|.|-=+.+++++.+. .+|+|+|++++|++.|+++++..+.+          ......|+++++++.-
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~  194 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLL  194 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchh
Confidence            458999999999888888888876 47999999999999999887653210          0011237888888753

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=80.53  E-value=11  Score=38.95  Aligned_cols=90  Identities=13%  Similarity=0.258  Sum_probs=69.9

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      |-.++.+++.-. .++.++++.|-=|.|.=|..+|++.   .+|+|+..||..+..-+++.+.-..     ..+++++++
T Consensus        44 p~v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~-----~~kLqV~~g  114 (315)
T KOG0820|consen   44 PLVIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPK-----SGKLQVLHG  114 (315)
T ss_pred             HHHHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCc-----cceeeEEec
Confidence            777788887775 5799999999999999999999973   4699999999999888887754322     247888888


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      .|=..      .     ...+|+++.||=|
T Consensus       115 D~lK~------d-----~P~fd~cVsNlPy  133 (315)
T KOG0820|consen  115 DFLKT------D-----LPRFDGCVSNLPY  133 (315)
T ss_pred             ccccC------C-----CcccceeeccCCc
Confidence            87322      1     1258888888754

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=80.16  E-value=11  Score=37.38  Aligned_cols=92  Identities=13%  Similarity=0.148  Sum_probs=60.7

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChh--HHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGH--SSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGH--S~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      ..|.|.+|.--...+.+|+++-++|.-  |.++... ..-+|+++++--|++.+...++.|..++.     ..-++++.+
T Consensus        29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~-----~~~vEfvvg  103 (218)
T PF07279_consen   29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL-----SDVVEFVVG  103 (218)
T ss_pred             HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----cccceEEec
Confidence            569999997544567899998876654  3444433 23357899999999998888887876643     123566654


Q ss_pred             C-cchHHHHHhhhcccccccCccEEEEccC
Q 012954          198 N-FRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       198 n-F~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      + -+   +++..+      .++|++|+|.-
T Consensus       104 ~~~e---~~~~~~------~~iDF~vVDc~  124 (218)
T PF07279_consen  104 EAPE---EVMPGL------KGIDFVVVDCK  124 (218)
T ss_pred             CCHH---HHHhhc------cCCCEEEEeCC
Confidence            4 22   233332      36888888865

The function of this family is unknown.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=80.13  E-value=4.6  Score=34.01  Aligned_cols=67  Identities=13%  Similarity=0.125  Sum_probs=48.8

Q ss_pred             cCCChhHHHHHHhCCCCC-EEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccE
Q 012954          142 LGAAGHSSAIIRAHPELK-LHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDA  220 (452)
Q Consensus       142 lG~GGHS~aIL~~~p~~g-~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDG  220 (452)
                      +|.|..+..+++.+...+ .|+.+|.|++.++.+++.             .+.++.++..+...+ .+.+    ....|.
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------------~~~~i~gd~~~~~~l-~~a~----i~~a~~   65 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------------GVEVIYGDATDPEVL-ERAG----IEKADA   65 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------------TSEEEES-TTSHHHH-HHTT----GGCESE
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------------ccccccccchhhhHH-hhcC----ccccCE
Confidence            689999999999865555 799999999998777642             145688999887544 4433    357999


Q ss_pred             EEEccC
Q 012954          221 ILMDLG  226 (452)
Q Consensus       221 ILfDLG  226 (452)
                      ++...+
T Consensus        66 vv~~~~   71 (116)
T PF02254_consen   66 VVILTD   71 (116)
T ss_dssp             EEEESS
T ss_pred             EEEccC
Confidence            998877

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=80.11  E-value=11  Score=40.31  Aligned_cols=80  Identities=15%  Similarity=0.103  Sum_probs=58.3

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC-cchHHHHHhhhcc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN-FRHIKSVLGQIDE  211 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n-F~~i~~~L~~~~~  211 (452)
                      .|+.++|+-.=.||-|.+-+..  ....|+++|.+..||+.|+++++-.+..    ..+..+++++ |+.|...-.. | 
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~l~~~~~~-g-  288 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKWLRKAERR-G-  288 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHHHHHHHhc-C-
Confidence            4889999988889888876643  3346999999999999999987655432    2366777765 7666544332 2 


Q ss_pred             cccccCccEEEEc
Q 012954          212 NILRSGVDAILMD  224 (452)
Q Consensus       212 ~l~~~~VDGILfD  224 (452)
                          ..+|.|++|
T Consensus       289 ----~~fDlIilD  297 (393)
T COG1092         289 ----EKFDLIILD  297 (393)
T ss_pred             ----CcccEEEEC
Confidence                369999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	452
1wg8_A	285	Crystal Structure Of A Predicted S-Adenosylmethioni		1e-45
1m6y_A	301	Crystal Structure Analysis Of Tm0872, A Putative Sa		3e-42
3tka_A	347	Crystal Structure And Solution Saxs Of Methyltransf		7e-39

>pdb|1WG8|A Chain A, Crystal Structure Of A Predicted S-Adenosylmethionine- Dependent Methyltransferase Tt1512 From Thermus Thermophilus Hb8. Length = 285

Iteration: 1
 Score =  180 bits (457), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 175/335 (52%), Gaps = 61/335 (18%)
Query: 118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA- 176
           PV+  E LD+ +  R    +VD TLG AGH+  I+     +   IG+D DP A+A+A+  
Sbjct: 8   PVLYQEALDLLAV-RPGGVYVDATLGGAGHARGILERGGRV---IGLDQDPEAVARAKGL 63
Query: 177 HLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPE 236
           HL  L   Q            NFRH+K  L  +   + R  VD IL DLG+SS  +++P 
Sbjct: 64  HLPGLTVVQG-----------NFRHLKRHLAAL--GVER--VDGILADLGVSSFHLDDPS 108
Query: 237 RGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARL 296
           RGFS   +GPLDMRM  +    A++++N  P   + R+LRE GEE   + +   IV AR 
Sbjct: 109 RGFSYQKEGPLDMRMGLEGP-TAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAARE 167
Query: 297 RGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDC 356
           +  + +T +L ++++    G R  R G    A + FQALRI VNDEL  L+  L    + 
Sbjct: 168 KAPIETTTQLAEIVRKAV-GFR--RAGH--PARKTFQALRIYVNDELNALKEFLEQAAEV 222
Query: 357 LAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQ 416
           LAPGGRL VI+FHSLEDR+VK                     R +R+  +          
Sbjct: 223 LAPGGRLVVIAFHSLEDRVVK---------------------RFLRESGL---------- 251
Query: 417 GWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
               K+LTK+P+ PS +E   N R RSAKLR  +K
Sbjct: 252 ----KVLTKKPLVPSEKEAAQNPRARSAKLRAAEK 282

>pdb|1M6Y|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam- Dependent Methyltransferase, Complexed With Sah Length = 301

Iteration: 1
 Score =  169 bits (428), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 169/336 (50%), Gaps = 52/336 (15%)
Query: 118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAH 177
           PV + EV++ F         +DCT+G  GHS AI+   P  ++ IG+DVD   L  A   
Sbjct: 12  PVXVREVIE-FLKPEDEKIILDCTVGEGGHSRAILEHCPGCRI-IGIDVDSEVLRIAEEK 69
Query: 178 LNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPER 237
           L            +   F  ++R    +L  +        VD IL DLG+S+ Q+    R
Sbjct: 70  LKEFSD-------RVSLFKVSYREADFLLKTLG----IEKVDGILXDLGVSTYQLKGENR 118
Query: 238 GFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNW-HLLQNKIVQARL 296
           GF+   + PLD R D ++ + A+ +LN  P+ E+ R++ EYGEE  +   +  KIV+ R 
Sbjct: 119 GFTFEREEPLDXRXDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENR- 177
Query: 297 RGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDC 356
              L++T +LV  ++   P    RR+     AT+ FQA+RI VN EL+ L+  L    D 
Sbjct: 178 --PLNTTLDLVKAVREALPSYEIRRRKR-HFATKTFQAIRIYVNRELENLKEFLKKAEDL 234
Query: 357 LAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQ 416
           L PGGR+ VISFHSLEDRIVK+TF             N ++LR                 
Sbjct: 235 LNPGGRIVVISFHSLEDRIVKETF------------RNSKKLR----------------- 265
Query: 417 GWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
                ILT++P+ PS EE R N R RS +LR  ++I
Sbjct: 266 -----ILTEKPVRPSEEEIRENPRARSGRLRAAERI 296

>pdb|3TKA|A Chain A, Crystal Structure And Solution Saxs Of Methyltransferase Rsmh From E.Coli Length = 347

Iteration: 1
 Score =  158 bits (399), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 112/328 (34%), Positives = 166/328 (50%), Gaps = 57/328 (17%)
Query: 137 FVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLN---SLLHGQAHPHLKTH 193
           ++D T G  GHS  I+    E    + +D DP A+A A+   +   S++HG         
Sbjct: 61  YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPF------- 113
Query: 194 TFAKNFRHIKSVLGQ-IDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMD 252
                     S LG+ + E  L   +D IL+DLG+SS Q+++ ERGFS + DGPLDMRMD
Sbjct: 114 ----------SALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMD 163
Query: 253 PQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQS 312
           P     A + L +  +A++  VL+ YGEE     +   IV+      +  T EL +++ +
Sbjct: 164 PTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEVVAA 223
Query: 313 VTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLE 372
            TP     +  +   ATR FQA+RI VN EL+ +E +L +  + LAPGGRL +ISFHSLE
Sbjct: 224 ATP----VKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLE 279
Query: 373 DRIVKQTFLSIIDHNREDAEG---------NEEELRNIRDDNINETWIRQIIQGWNGKIL 423
           DRIVK+         RE++ G          EE+L+ +    +             GK++
Sbjct: 280 DRIVKRFM-------RENSRGPQVPAGLPMTEEQLKKLGGRQLRAL----------GKLM 322
Query: 424 TKRPITPSAEEERLNCRCRSAKLRVIQK 451
                 P  EE   N R RS+ LR+ ++
Sbjct: 323 ------PGEEEVAENPRARSSVLRIAER 344

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	452
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	1e-115
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	1e-107
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	1e-106

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* Length = 301

 Score =  339 bits (872), Expect = e-115
 Identities = 122/349 (34%), Positives = 173/349 (49%), Gaps = 64/349 (18%)

Query: 111 QQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSA 170
           +    HIPVM+ EV++           +DCT+G  GHS AI+   P  ++ IG+DVD   
Sbjct: 5   KYSQRHIPVMVREVIEFLKPEDEKI-ILDCTVGEGGHSRAILEHCPGCRI-IGIDVDSEV 62

Query: 171 LAKARAHLN------SLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMD 224
           L  A   L       SL                ++R    +L  +        VD ILMD
Sbjct: 63  LRIAEEKLKEFSDRVSLFKV-------------SYREADFLLKTLGI----EKVDGILMD 105

Query: 225 LGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNW 284
           LG+S+ Q+    RGF+   + PLDMRMD ++ + A+ +LN  P+ E+ R++ EYGEE  +
Sbjct: 106 LGVSTYQLKGENRGFTFEREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRF 165

Query: 285 -HLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDEL 343
              +  KIV+ R    L++T +LV  ++   P    RR+     AT+ FQA+RI VN EL
Sbjct: 166 ARRIARKIVENR---PLNTTLDLVKAVREALPSYEIRRRK-RHFATKTFQAIRIYVNREL 221

Query: 344 KTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRD 403
           + L+  L    D L PGGR+ VISFHSLEDRIVK+TF       R   +           
Sbjct: 222 ENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETF-------RNSKK----------- 263

Query: 404 DNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
                            +ILT++P+ PS EE R N R RS +LR  ++I
Sbjct: 264 ----------------LRILTEKPVRPSEEEIRENPRARSGRLRAAERI 296

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} Length = 347

 Score =  321 bits (826), Expect = e-107
 Identities = 112/348 (32%), Positives = 177/348 (50%), Gaps = 46/348 (13%)

Query: 112 QQSSHIPVMLGEVLDVFSSSRTITS---FVDCTLGAAGHSSAII-RAHPELKLHIGVDVD 167
           +   H  V+L E ++  +    I     ++D T G  GHS  I+ +   E +L + +D D
Sbjct: 37  ENYKHTTVLLDEAVNGLN----IRPDGIYIDGTFGRGGHSRLILSQLGEEGRL-LAIDRD 91

Query: 168 PSALAKARAHLN---SLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMD 224
           P A+A A+   +   S++HG              F  +   + + D   L   +D IL+D
Sbjct: 92  PQAIAVAKTIDDPRFSIIHG-------------PFSALGEYVAERD---LIGKIDGILLD 135

Query: 225 LGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNW 284
           LG+SS Q+++ ERGFS + DGPLDMRMDP     A + L +  +A++  VL+ YGEE   
Sbjct: 136 LGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFA 195

Query: 285 HLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELK 344
             +   IV+      +  T EL +++ + TP     +  +   ATR FQA+RI VN EL+
Sbjct: 196 KRIARAIVERNREQPMTRTKELAEVVAAATP----VKDKFKHPATRTFQAVRIWVNSELE 251

Query: 345 TLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDD 404
            +E +L +  + LAPGGRL +ISFHSLEDRIVK+         RE++ G +         
Sbjct: 252 EIEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFM-------RENSRGPQVP----AGL 300

Query: 405 NINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
            + E  ++++      ++     + P  EE   N R RS+ LR+ ++ 
Sbjct: 301 PMTEEQLKKLG---GRQLRALGKLMPGEEEVAENPRARSSVLRIAERT 345

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 Length = 285

 Score =  315 bits (811), Expect = e-106
 Identities = 119/347 (34%), Positives = 172/347 (49%), Gaps = 71/347 (20%)

Query: 112 QQSSHIPVMLGEVLDVFSSSRTITS---FVDCTLGAAGHSSAIIRAHPELKLHIGVDVDP 168
           +  +H+PV+  E LD+ +    +     +VD TLG AGH+  I+     +   IG+D DP
Sbjct: 2   RPMTHVPVLYQEALDLLA----VRPGGVYVDATLGGAGHARGILERGGRV---IGLDQDP 54

Query: 169 SALAKARAHLN---SLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDL 225
            A+A+A+       +++ G             NFRH+K  L  +        VD IL DL
Sbjct: 55  EAVARAKGLHLPGLTVVQG-------------NFRHLKRHLAALGV----ERVDGILADL 97

Query: 226 GMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWH 285
           G+SS  +++P RGFS   +GPLDMRM  +    A++++N  P   + R+LRE GEE   +
Sbjct: 98  GVSSFHLDDPSRGFSYQKEGPLDMRMGLE-GPTAKEVVNRLPLEALARLLRELGEEPQAY 156

Query: 286 LLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKT 345
            +   IV AR +  + +T +L ++++      R         A + FQALRI VNDEL  
Sbjct: 157 RIARAIVAAREKAPIETTTQLAEIVRKAVGFRRA-----GHPARKTFQALRIYVNDELNA 211

Query: 346 LESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDN 405
           L+  L    + LAPGGRL VI+FHSLEDR+VK+         RE                
Sbjct: 212 LKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFL-------RESG-------------- 250

Query: 406 INETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
                          K+LTK+P+ PS +E   N R RSAKLR  +K 
Sbjct: 251 --------------LKVLTKKPLVPSEKEAAQNPRARSAKLRAAEKE 283

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	452
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	100.0
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	100.0
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	100.0
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.88
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.55
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.51
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.46
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.44
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.36
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.33
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.26
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.17
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.16
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.15
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.1
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.04
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.02
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.98
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.97
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.94
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.93
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.92
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.92
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.92
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.92
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	97.92
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.88
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.84
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.83
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.82
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.82
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.81
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.8
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.78
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.76
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	97.75
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.74
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.73
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.71
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.71
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.67
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.67
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.65
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	97.65
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.63
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	97.63
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	97.63
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.63
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	97.62
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	97.59
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.58
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.58
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.57
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.57
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.57
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.56
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.56
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.56
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	97.55
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	97.55
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.55
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.52
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.5
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.5
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.48
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.47
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.46
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.44
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.43
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.42
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.38
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.37
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.37
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	97.37
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.36
3f4k_A	257	Putative methyltransferase; structural genomics, P	97.36
2h00_A	254	Methyltransferase 10 domain containing protein; st	97.36
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.35
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	97.31
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	97.3
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.3
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.28
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.27
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.27
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.26
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.26
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.26
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	97.26
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.24
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.24
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.23
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.19
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.18
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.18
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.17
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.14
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	97.14
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.14
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.13
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.12
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	97.1
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.07
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	97.06
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	97.04
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.03
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.03
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.02
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.01
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.0
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	96.99
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	96.99
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	96.99
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	96.98
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	96.97
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	96.96
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	96.96
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	96.95
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	96.93
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.91
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.91
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.9
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.88
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	96.83
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	96.82
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	96.8
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	96.79
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	96.77
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	96.75
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	96.74
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	96.72
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.72
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	96.72
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	96.71
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	96.68
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.67
2qm3_A	373	Predicted methyltransferase; putative methyltransf	96.66
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	96.61
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	96.55
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	96.54
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.53
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	96.51
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	96.5
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	96.5
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	96.46
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	96.46
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	96.45
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	96.45
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	96.45
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	96.39
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	96.39
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	96.38
1xxl_A	239	YCGJ protein; structural genomics, protein structu	96.38
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	96.37
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	96.35
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	96.34
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	96.31
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	96.3
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	96.28
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	96.25
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	96.23
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	96.22
3ocj_A	305	Putative exported protein; structural genomics, PS	96.22
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	96.22
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	96.21
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	96.21
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	96.21
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.2
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	96.18
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	96.17
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	96.14
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	96.08
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	96.08
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	96.07
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	96.06
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	96.06
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	96.05
3lcc_A	235	Putative methyl chloride transferase; halide methy	96.02
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	96.01
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.01
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	95.99
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	95.99
2pt6_A	321	Spermidine synthase; transferase, structural genom	95.98
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	95.92
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	95.92
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.88
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	95.87
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	95.86
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	95.85
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	95.84
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	95.84
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	95.83
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	95.82
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	95.8
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	95.78
2p7i_A	250	Hypothetical protein; putative methyltransferase,	95.78
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	95.76
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	95.76
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	95.74
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	95.72
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	95.71
2o07_A	304	Spermidine synthase; structural genomics, structur	95.7
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	95.7
3ege_A	261	Putative methyltransferase from antibiotic biosyn	95.68
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	95.68
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	95.67
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.65
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	95.65
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	95.57
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	95.55
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	95.53
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	95.49
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	95.48
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	95.47
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	95.43
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	95.43
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	95.42
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	95.4
3i9f_A	170	Putative type 11 methyltransferase; structural gen	95.39
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	95.35
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	95.29
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	95.25
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	95.16
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	95.03
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	95.01
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	95.01
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	95.01
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	95.0
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	94.97
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	94.95
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.92
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	94.88
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	94.76
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	94.72
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	94.7
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	94.6
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	94.52
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	94.37
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	94.37
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	94.2
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	94.18
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	93.98
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	93.77
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	93.58
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.54
3cvo_A	202	Methyltransferase-like protein of unknown functio;	93.44
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	93.39
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	93.37
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	93.36
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	93.29
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	93.16
3cc8_A	230	Putative methyltransferase; structural genomics, j	93.1
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	93.07
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	92.94
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	92.84
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	92.72
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	92.62
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	92.54
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	92.3
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	91.97
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	91.03
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	90.86
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	89.74
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	88.97
3lkd_A	542	Type I restriction-modification system methyltrans	88.0
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	87.7
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	87.47
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	87.32
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	87.27
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	87.22
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	87.12
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	86.77
3sso_A	419	Methyltransferase; macrolide, natural product, ros	86.5
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	85.66
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	85.49
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	85.41
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	84.98
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	84.67
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	84.66
3ufb_A	530	Type I restriction-modification system methyltran	83.63
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	83.42
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	82.18
3khk_A	544	Type I restriction-modification system methylation	82.13
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	81.82
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	81.45
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	80.96

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=100.00  E-value=9.9e-112  Score=853.96  Aligned_cols=307  Identities=35%  Similarity=0.515  Sum_probs=265.1

Q ss_pred             CCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954          114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       114 ~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      +.|+|||++|+++.|. ++||++|||||||+||||.+||+++++.|+|||||+|++|++.|+ +|  +       ..|++
T Consensus        39 ~~H~pVLl~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~-------~~Rv~  107 (347)
T 3tka_A           39 YKHTTVLLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D-------DPRFS  107 (347)
T ss_dssp             ---CCTTTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C-------CTTEE
T ss_pred             CCcccccHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c-------CCcEE
Confidence            5699999999999998 579999999999999999999999887789999999999999994 55  2       13899


Q ss_pred             EEccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCcccCCCCCCcccCCCCCCCCHHHHHhcCChHHHHH
Q 012954          194 TFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGR  273 (452)
Q Consensus       194 li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~eL~~  273 (452)
                      ++++||+++.+++.+.+.   ...||||||||||||||||+++|||||+.|||||||||+++++||+||||+||++||++
T Consensus       108 lv~~nF~~l~~~L~~~g~---~~~vDgILfDLGVSS~QlD~~eRGFSf~~dgPLDMRMd~~~~~tAadvvn~~~e~eLa~  184 (347)
T 3tka_A          108 IIHGPFSALGEYVAERDL---IGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAW  184 (347)
T ss_dssp             EEESCGGGHHHHHHHTTC---TTCEEEEEEECSCCHHHHHCGGGCCCSSSCCBSCCCSCTTSSCCHHHHHHHCCHHHHHH
T ss_pred             EEeCCHHHHHHHHHhcCC---CCcccEEEECCccCHHHhcCCCCCCCCCCCCCcCCCCCCCCCCCHHHHHhhCCHHHHHH
Confidence            999999999999987652   12599999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCCCcCCCCCccchhHHHHHHHHHHHHhhHHHHHHHHHHH
Q 012954          274 VLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHAC  353 (452)
Q Consensus       274 Ifr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~~~~~~~~~~hpATR~FQALRI~VN~EL~~L~~~L~~a  353 (452)
                      ||++||||++|++||++||++|+.+||+||.||+++|++++|..    ..++||||||||||||+||+||++|+++|+++
T Consensus       185 Il~~YGEEr~a~rIA~aIv~~R~~~pi~tT~~La~ii~~a~p~~----~~~~hpAtrtFQALRI~VN~EL~~L~~~L~~a  260 (347)
T 3tka_A          185 VLKTYGEERFAKRIARAIVERNREQPMTRTKELAEVVAAATPVK----DKFKHPATRTFQAVRIWVNSELEEIEQALKSS  260 (347)
T ss_dssp             HHHHHHCCTTHHHHHHHHHHHHHHSCCCBHHHHHHHHHHHSCCC--------CTTHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHhcCcchHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhCCcc----ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999963    13579999999999999999999999999999


Q ss_pred             HHhhcCCCeEEEEeecchhHHHHHHHHHhhhccCCCccCCchhhhhcccccCcchhHHHHHhhCCcceeecCCCCCCCHH
Q 012954          354 FDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSAE  433 (452)
Q Consensus       354 ~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltkKpi~Ps~e  433 (452)
                      +++|+|||||||||||||||||||+||++++..|.     +|+.++.|.|....       ...+.++++||  |+||++
T Consensus       261 ~~~L~~gGRl~VISFHSLEDRiVK~~f~~~~~~~~-----~p~~~p~~~~~~~~-------~~~~~~~~i~k--i~ps~~  326 (347)
T 3tka_A          261 LNVLAPGGRLSIISFHSLEDRIVKRFMRENSRGPQ-----VPAGLPMTEEQLKK-------LGGRQLRALGK--LMPGEE  326 (347)
T ss_dssp             HHHEEEEEEEEEEESSHHHHHHHHHHHHHTTCC-------------------------------CCEEEEEE--ECCCHH
T ss_pred             HHHhCCCCEEEEEecCchhHHHHHHHHHHhccCCC-----CCccCCcccccccc-------ccCcceeeecC--cCcCHH
Confidence            99999999999999999999999999999876543     34555554332100       00124678887  999999


Q ss_pred             HHHhCcCccccccceeEeC
Q 012954          434 EERLNCRCRSAKLRVIQKI  452 (452)
Q Consensus       434 Ei~~NpRSRSAKLRv~eK~  452 (452)
                      ||+.||||||||||||||+
T Consensus       327 Ei~~NpRsRSAkLRvaek~  345 (347)
T 3tka_A          327 EVAENPRARSSVLRIAERT  345 (347)
T ss_dssp             HHHHCGGGTTCEEEEEEEC
T ss_pred             HHHhCccccceeeeEEEec
Confidence            9999999999999999995

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=100.00  E-value=2.3e-107  Score=805.53  Aligned_cols=281  Identities=42%  Similarity=0.638  Sum_probs=263.1

Q ss_pred             CCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceE
Q 012954          113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKT  192 (452)
Q Consensus       113 ~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~  192 (452)
                      .+.|+|||++|+++.|. ++++++|||||||+||||.+||++   .++|||||+||+|++.|++ |+.         .|+
T Consensus         3 ~~~H~pVLl~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~---------~rv   68 (285)
T 1wg8_A            3 PMTHVPVLYQEALDLLA-VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL---------PGL   68 (285)
T ss_dssp             -CCCCCTTHHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC---------TTE
T ss_pred             CCCchhHHHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc---------CCE
Confidence            35699999999999998 579999999999999999999998   4689999999999999998 754         279


Q ss_pred             EEEccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCcccCCCCCCcccCCCCCCCCHHHHHhcCChHHHH
Q 012954          193 HTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVG  272 (452)
Q Consensus       193 ~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~eL~  272 (452)
                      +++|+||++++++|.+.+    ...||||||||||||||||+++|||||+.||||||||| ++++||+||||+||++||+
T Consensus        69 ~lv~~~f~~l~~~L~~~g----~~~vDgIL~DLGvSS~Qld~~~RGFSf~~d~pLDMRMd-~~~~tA~~~vn~~~~~~L~  143 (285)
T 1wg8_A           69 TVVQGNFRHLKRHLAALG----VERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDMRMG-LEGPTAKEVVNRLPLEALA  143 (285)
T ss_dssp             EEEESCGGGHHHHHHHTT----CSCEEEEEEECSCCHHHHHCGGGCCCSSSCCBSCCCSS-SCSCCHHHHHHHSCHHHHH
T ss_pred             EEEECCcchHHHHHHHcC----CCCcCEEEeCCccccccccccccCccccCCCcchhhcC-CCCCcHHHHHhhCCHHHHH
Confidence            999999999999998765    24799999999999999999999999999999999999 8999999999999999999


Q ss_pred             HHHHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCCCcCCCCCccchhHHHHHHHHHHHHhhHHHHHHHHHH
Q 012954          273 RVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHA  352 (452)
Q Consensus       273 ~Ifr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~~~~~~~~~~hpATR~FQALRI~VN~EL~~L~~~L~~  352 (452)
                      +||++||||++|++||++||++|+.+||+||.||+++|++++|. +    ..+||||||||||||+||+||++|+.+|++
T Consensus       144 ~i~~~yGee~~a~~iA~~Iv~~R~~~pi~tt~~L~~ii~~~~p~-~----~~~hpatr~FQAlRI~VN~EL~~L~~~L~~  218 (285)
T 1wg8_A          144 RLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIVRKAVGF-R----RAGHPARKTFQALRIYVNDELNALKEFLEQ  218 (285)
T ss_dssp             HHHHHHHCCTTHHHHHHHHHHHHHHSCCCBHHHHHHHHHHHHCC-C----SSSCTTHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHhcCHhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcCC-C----CCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999995 1    236999999999999999999999999999


Q ss_pred             HHHhhcCCCeEEEEeecchhHHHHHHHHHhhhccCCCccCCchhhhhcccccCcchhHHHHHhhCCcceeecCCCCCCCH
Q 012954          353 CFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSA  432 (452)
Q Consensus       353 a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltkKpi~Ps~  432 (452)
                      ++++|+|||||+|||||||||||||+||++    |                             +  ++++|+|||+||+
T Consensus       219 a~~~L~~gGrl~visfHSLEDRiVK~~~~~----~-----------------------------~--~~~~~~k~i~ps~  263 (285)
T 1wg8_A          219 AAEVLAPGGRLVVIAFHSLEDRVVKRFLRE----S-----------------------------G--LKVLTKKPLVPSE  263 (285)
T ss_dssp             HHHHEEEEEEEEEEECSHHHHHHHHHHHHH----H-----------------------------C--SEESCSSCBCCCH
T ss_pred             HHHHhcCCCEEEEEecCcHHHHHHHHHHHh----C-----------------------------C--cccccCCCcCCCH
Confidence            999999999999999999999999999986    1                             0  3679999999999


Q ss_pred             HHHHhCcCccccccceeEeC
Q 012954          433 EEERLNCRCRSAKLRVIQKI  452 (452)
Q Consensus       433 eEi~~NpRSRSAKLRv~eK~  452 (452)
                      +||+.||||||||||||||+
T Consensus       264 ~E~~~NpRsrSAkLR~~~r~  283 (285)
T 1wg8_A          264 KEAAQNPRARSAKLRAAEKE  283 (285)
T ss_dssp             HHHHHCGGGGGCEEEEEECC
T ss_pred             HHHHhCCCccceeceEEEec
Confidence            99999999999999999985

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=100.00  E-value=1.6e-87  Score=667.39  Aligned_cols=291  Identities=41%  Similarity=0.628  Sum_probs=266.3

Q ss_pred             hcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCC
Q 012954          110 QQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPH  189 (452)
Q Consensus       110 ~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~  189 (452)
                      ......|+|||++|+++.|. +.+++.|+|+|+|.||||.+|++.++ .++|+|+|+|++|++.|+++++.++       
T Consensus         4 ~~~~~~h~pvLl~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g-------   74 (301)
T 1m6y_A            4 RKYSQRHIPVMVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS-------   74 (301)
T ss_dssp             CCSCSSCCCTTHHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT-------
T ss_pred             CCCCccccHHHHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC-------
Confidence            34456799999999999997 56899999999999999999999987 4689999999999999999988764       


Q ss_pred             ceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCcccCCCCCCcccCCCCCCCCHHHHHhcCChH
Q 012954          190 LKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDA  269 (452)
Q Consensus       190 ~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~  269 (452)
                      .++++++++|.++..++.+.+    ...+|+|++|+||||+|+|+++|||||+.|+|||||||+..++||++|||+|+++
T Consensus        75 ~~v~~v~~d~~~l~~~l~~~g----~~~~D~Vl~D~gvSs~qld~~~rgfs~~~d~pLdmrm~~~~~~ta~~~l~~~~~~  150 (301)
T 1m6y_A           75 DRVSLFKVSYREADFLLKTLG----IEKVDGILMDLGVSTYQLKGENRGFTFEREEPLDMRMDLESEVTAQKVLNELPEE  150 (301)
T ss_dssp             TTEEEEECCGGGHHHHHHHTT----CSCEEEEEEECSCCHHHHHTSCSCSSSSSCCBSCCCSSTTSSCCHHHHHHHSCHH
T ss_pred             CcEEEEECCHHHHHHHHHhcC----CCCCCEEEEcCccchhhhcccccceEEeecccceeccCCccCccHHHHHhcCCHH
Confidence            279999999999988776543    1369999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCC-cchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCC-CcCCCCCccchhHHHHHHHHHHHHhhHHHHH
Q 012954          270 EVGRVLREYGEE-SNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPG-MRGRRQGWIKTATRVFQALRIAVNDELKTLE  347 (452)
Q Consensus       270 eL~~Ifr~YGEE-~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~-~~~~~~~~~hpATR~FQALRI~VN~EL~~L~  347 (452)
                      +|.+|++.|||| +++++||++|+++|   ||+||.||+++|.+++|. ..  ++..+||||||||||||+||+||++|+
T Consensus       151 ~L~~i~~~yGee~r~a~~ia~aIv~~r---pi~tt~~L~~ii~~~~p~~~~--~~~~~~pa~r~fQalRi~vn~el~~l~  225 (301)
T 1m6y_A          151 ELARIIFEYGEEKRFARRIARKIVENR---PLNTTLDLVKAVREALPSYEI--RRRKRHFATKTFQAIRIYVNRELENLK  225 (301)
T ss_dssp             HHHHHHHHTTCCTTTHHHHHHHHHHTC---SCCBHHHHHHHHHHHSCHHHH--HHCSSCTTHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHhCccHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHCCcccc--cccCCChHHHHHHHHHHHHhcCHHHHH
Confidence            999999999999 99999999999987   999999999999999985 21  123469999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHhhhccCCCccCCchhhhhcccccCcchhHHHHHhhCCcceeecCCC
Q 012954          348 SSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRP  427 (452)
Q Consensus       348 ~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltkKp  427 (452)
                      ++|++++++|+|||||+|||||||||||||+||++   .    +                           .++++||||
T Consensus       226 ~~l~~~~~~l~~ggr~~visfhsledr~vk~~~~~---~----~---------------------------~~~~~~~~~  271 (301)
T 1m6y_A          226 EFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN---S----K---------------------------KLRILTEKP  271 (301)
T ss_dssp             HHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH---C----S---------------------------SEEESCSSC
T ss_pred             HHHHHHHHhhCCCCEEEEEecCcHHHHHHHHHhhc---C----C---------------------------ceeeecCCC
Confidence            99999999999999999999999999999999986   0    0                           146899999


Q ss_pred             CCCCHHHHHhCcCccccccceeEeC
Q 012954          428 ITPSAEEERLNCRCRSAKLRVIQKI  452 (452)
Q Consensus       428 i~Ps~eEi~~NpRSRSAKLRv~eK~  452 (452)
                      |+||++||+.||||||||||||||+
T Consensus       272 ~~~~~~e~~~n~r~rsa~lr~~~~~  296 (301)
T 1m6y_A          272 VRPSEEEIRENPRARSGRLRAAERI  296 (301)
T ss_dssp             BCCCHHHHHHCGGGTTCEEEEEEEC
T ss_pred             CCCCHHHHHhCCcchhhhhheeeeh
Confidence            9999999999999999999999985

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.88  E-value=1.3e-08  Score=91.31  Aligned_cols=83  Identities=18%  Similarity=0.270  Sum_probs=68.8

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      +++..++|...|.|+.+..+++.+++.+.|+|+|+++.+++.|+++++..+.     ..+++++++++.++....     
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~-----   90 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL-----IDRVTLIKDGHQNMDKYI-----   90 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC-----GGGEEEECSCGGGGGGTC-----
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCHHHHhhhc-----
Confidence            5789999999999999999999875556899999999999999999877542     247999999987764322     


Q ss_pred             cccccCccEEEEccCC
Q 012954          212 NILRSGVDAILMDLGM  227 (452)
Q Consensus       212 ~l~~~~VDGILfDLGv  227 (452)
                         ...+|.|++|+++
T Consensus        91 ---~~~fD~v~~~~~~  103 (197)
T 3eey_A           91 ---DCPVKAVMFNLGY  103 (197)
T ss_dssp             ---CSCEEEEEEEESB
T ss_pred             ---cCCceEEEEcCCc
Confidence               2469999999988

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.55  E-value=8.1e-07  Score=92.93  Aligned_cols=108  Identities=11%  Similarity=0.021  Sum_probs=82.6

Q ss_pred             cCCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          101 KDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       101 ~~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      ..|..+.+..++.....   +   ...|. ++++..++|++.|.||.|..|++.+++.+.|+|+|+|+.+++.++++++.
T Consensus        80 ~~~~~G~~~vQd~ss~l---~---~~~L~-~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r  152 (456)
T 3m4x_A           80 FLHQAGYEYSQEPSAMI---V---GTAAA-AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIER  152 (456)
T ss_dssp             HHHHTTSCEECCTTTHH---H---HHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHH
T ss_pred             hHHhCCcEEEECHHHHH---H---HHHcC-CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            34556655555544332   2   33444 46889999999999999999999988778999999999999999999988


Q ss_pred             hccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          181 LLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       181 ~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      ++.      .++.+++.+...+...+.        ..+|.||+|--+|.
T Consensus       153 ~g~------~nv~v~~~Da~~l~~~~~--------~~FD~Il~DaPCSg  187 (456)
T 3m4x_A          153 WGV------SNAIVTNHAPAELVPHFS--------GFFDRIVVDAPCSG  187 (456)
T ss_dssp             HTC------SSEEEECCCHHHHHHHHT--------TCEEEEEEECCCCC
T ss_pred             cCC------CceEEEeCCHHHhhhhcc--------ccCCEEEECCCCCC
Confidence            764      268888888877654332        36999999988875

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.51  E-value=2e-07  Score=92.55  Aligned_cols=92  Identities=14%  Similarity=0.088  Sum_probs=73.4

Q ss_pred             hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH
Q 012954          126 DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV  205 (452)
Q Consensus       126 ~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~  205 (452)
                      ..|. ++++..++|++.|.||+|..|++.+++.++|+|+|+|+.+++.++++++.++.      .++++++.++.++...
T Consensus        96 ~~l~-~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~------~~v~~~~~D~~~~~~~  168 (309)
T 2b9e_A           96 MLLD-PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVSPS  168 (309)
T ss_dssp             HHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSCTT
T ss_pred             HHhC-CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCChHhcCcc
Confidence            3444 46899999999999999999999876668899999999999999999988754      2688899988765321


Q ss_pred             HhhhcccccccCccEEEEccCCCcc
Q 012954          206 LGQIDENILRSGVDAILMDLGMSSM  230 (452)
Q Consensus       206 L~~~~~~l~~~~VDGILfDLGvSS~  230 (452)
                      ...      ...+|.||+|-.+|..
T Consensus       169 ~~~------~~~fD~Vl~D~PcSg~  187 (309)
T 2b9e_A          169 DPR------YHEVHYILLDPSCSGS  187 (309)
T ss_dssp             CGG------GTTEEEEEECCCCCC-
T ss_pred             ccc------cCCCCEEEEcCCcCCC
Confidence            111      1369999999999875

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.46  E-value=4e-06  Score=73.36  Aligned_cols=91  Identities=9%  Similarity=0.046  Sum_probs=68.6

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      -+...+++.+. ..++..++|...|.|..+..+++.   ...++|+|+++.+++.|++++...+..    ..++++++.+
T Consensus        39 ~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~----~~~~~~~~~d  110 (194)
T 1dus_A           39 KGTKILVENVV-VDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLD----NYDIRVVHSD  110 (194)
T ss_dssp             HHHHHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCT----TSCEEEEECS
T ss_pred             hHHHHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECc
Confidence            35677788886 458889999999999999998887   357999999999999999988765431    1148888887


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCC
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +.+.   +.       ...+|.|++|..+
T Consensus       111 ~~~~---~~-------~~~~D~v~~~~~~  129 (194)
T 1dus_A          111 LYEN---VK-------DRKYNKIITNPPI  129 (194)
T ss_dssp             TTTT---CT-------TSCEEEEEECCCS
T ss_pred             hhcc---cc-------cCCceEEEECCCc
Confidence            7542   11       2369999986543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.44  E-value=1.1e-06  Score=81.82  Aligned_cols=95  Identities=9%  Similarity=0.030  Sum_probs=74.0

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      -+|-....+++.+. ..++..++|+..|.|+.+..+++.+++.++|+|+|+++++++.|+++++.++.     ..+++++
T Consensus        77 ~~~~~~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~v~~~  150 (255)
T 3mb5_A           77 VHPKDAALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-----DDRVTIK  150 (255)
T ss_dssp             CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC-----TTTEEEE
T ss_pred             ccHhHHHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC-----CCceEEE
Confidence            34555667777776 56889999999999999999999855456899999999999999999887754     2358899


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      +.++.+.   +.       ...+|.|++|+.
T Consensus       151 ~~d~~~~---~~-------~~~~D~v~~~~~  171 (255)
T 3mb5_A          151 LKDIYEG---IE-------EENVDHVILDLP  171 (255)
T ss_dssp             CSCGGGC---CC-------CCSEEEEEECSS
T ss_pred             ECchhhc---cC-------CCCcCEEEECCC
Confidence            9888632   21       236999998643

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.36  E-value=9.7e-07  Score=78.20  Aligned_cols=89  Identities=21%  Similarity=0.269  Sum_probs=69.0

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +.++++....  .++..++|..+|.|..+..+++.   .++|+|+|+++.+++.|+++++..+.      .+++++++++
T Consensus        11 ~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~~~   79 (185)
T 3mti_A           11 MSHDFLAEVL--DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI------ENTELILDGH   79 (185)
T ss_dssp             HHHHHHHTTC--CTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC------CCEEEEESCG
T ss_pred             HHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCcH
Confidence            4455555442  47899999999999999998876   36799999999999999999887643      3688888888


Q ss_pred             chHHHHHhhhcccccccCccEEEEccCC
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ..+..+.        ...+|.|++|+|+
T Consensus        80 ~~l~~~~--------~~~fD~v~~~~~~   99 (185)
T 3mti_A           80 ENLDHYV--------REPIRAAIFNLGY   99 (185)
T ss_dssp             GGGGGTC--------CSCEEEEEEEEC-
T ss_pred             HHHHhhc--------cCCcCEEEEeCCC
Confidence            7754332        1369999999876

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.33  E-value=8.7e-06  Score=73.46  Aligned_cols=87  Identities=14%  Similarity=0.097  Sum_probs=66.8

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      ..+++.+. ..++..++|.-.|.|..+..+++..|. .+|+|+|+++.+++.|+++++.++.      .++.++++++.+
T Consensus        30 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~  101 (204)
T 3e05_A           30 AVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVA------RNVTLVEAFAPE  101 (204)
T ss_dssp             HHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTC------TTEEEEECCTTT
T ss_pred             HHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEeCChhh
Confidence            45567775 468899999999999999999988765 5799999999999999998877643      268888887743


Q ss_pred             HHHHHhhhcccccccCccEEEEcc
Q 012954          202 IKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      .   +..      ...+|.|+.+.
T Consensus       102 ~---~~~------~~~~D~i~~~~  116 (204)
T 3e05_A          102 G---LDD------LPDPDRVFIGG  116 (204)
T ss_dssp             T---CTT------SCCCSEEEESC
T ss_pred             h---hhc------CCCCCEEEECC
Confidence            2   111      13588888663

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.26  E-value=1.2e-05  Score=69.91  Aligned_cols=88  Identities=8%  Similarity=0.151  Sum_probs=65.2

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +...+++.+. ..++..++|.-.|.|..+..+++.++. .+|+|+|+++.+++.|++++..++.     ..++ +++++.
T Consensus        13 ~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~-~~~~d~   84 (178)
T 3hm2_A           13 VRALAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQ-TTAVCFEISEERRERILSNAINLGV-----SDRI-AVQQGA   84 (178)
T ss_dssp             HHHHHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSS-EEEEEECSCHHHHHHHHHHHHTTTC-----TTSE-EEECCT
T ss_pred             HHHHHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHHHHhCC-----CCCE-EEecch
Confidence            4456677775 467889999999999999999988865 5799999999999999998877643     1256 666665


Q ss_pred             chHHHHHhhhcccccccCccEEEE
Q 012954          200 RHIKSVLGQIDENILRSGVDAILM  223 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILf  223 (452)
                      .+   .+...     ...+|.|+.
T Consensus        85 ~~---~~~~~-----~~~~D~i~~  100 (178)
T 3hm2_A           85 PR---AFDDV-----PDNPDVIFI  100 (178)
T ss_dssp             TG---GGGGC-----CSCCSEEEE
T ss_pred             Hh---hhhcc-----CCCCCEEEE
Confidence            32   22221     146999985

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.17  E-value=2.5e-05  Score=68.06  Aligned_cols=88  Identities=13%  Similarity=0.131  Sum_probs=65.8

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .+...+++.+. ..++..++|...|.|..+..+++..   ..|+|+|.++.+++.|+++++.++.     ..++.+++.+
T Consensus        20 ~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d   90 (192)
T 1l3i_A           20 EVRCLIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGL-----GDNVTLMEGD   90 (192)
T ss_dssp             HHHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC-----CTTEEEEESC
T ss_pred             HHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEecC
Confidence            34555666665 4688899999999999999888766   5799999999999999998876643     1367788877


Q ss_pred             cchHHHHHhhhcccccccCccEEEEc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      +..   .+...      ..+|.|+.+
T Consensus        91 ~~~---~~~~~------~~~D~v~~~  107 (192)
T 1l3i_A           91 APE---ALCKI------PDIDIAVVG  107 (192)
T ss_dssp             HHH---HHTTS------CCEEEEEES
T ss_pred             HHH---hcccC------CCCCEEEEC
Confidence            654   23221      268888875

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.16  E-value=9.5e-06  Score=77.89  Aligned_cols=93  Identities=17%  Similarity=0.193  Sum_probs=72.9

Q ss_pred             hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH
Q 012954          126 DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV  205 (452)
Q Consensus       126 ~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~  205 (452)
                      ..|. +.++..++|+..|.||.|..+++.+++.++|+|+|+++.+++.++++++.++.      .++++++.+..++...
T Consensus        77 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~~~~  149 (274)
T 3ajd_A           77 IVLN-PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV------LNTIIINADMRKYKDY  149 (274)
T ss_dssp             HHHC-CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCHHHHHHH
T ss_pred             HHhC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC------CcEEEEeCChHhcchh
Confidence            3444 46889999999999999999999887767899999999999999999887653      2688899988776543


Q ss_pred             HhhhcccccccCccEEEEccCCCcc
Q 012954          206 LGQIDENILRSGVDAILMDLGMSSM  230 (452)
Q Consensus       206 L~~~~~~l~~~~VDGILfDLGvSS~  230 (452)
                      +...     ...+|.|+.|.=+|..
T Consensus       150 ~~~~-----~~~fD~Vl~d~Pcs~~  169 (274)
T 3ajd_A          150 LLKN-----EIFFDKILLDAPCSGN  169 (274)
T ss_dssp             HHHT-----TCCEEEEEEEECCC--
T ss_pred             hhhc-----cccCCEEEEcCCCCCC
Confidence            3211     1369999999777654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.15  E-value=1.5e-05  Score=75.93  Aligned_cols=90  Identities=11%  Similarity=0.104  Sum_probs=70.2

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      ....+++.+. ..++..++|+-.|.|..+..+++.+++.++|+++|+++.+++.|+++++.++.     ..++.+++.++
T Consensus       100 ~~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~  173 (277)
T 1o54_A          100 DSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----IERVTIKVRDI  173 (277)
T ss_dssp             HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----GGGEEEECCCG
T ss_pred             HHHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----CCCEEEEECCH
Confidence            3456777776 46889999999999999999999865556899999999999999998877642     13688888887


Q ss_pred             chHHHHHhhhcccccccCccEEEEcc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      .+.   +.       ...+|.|++|+
T Consensus       174 ~~~---~~-------~~~~D~V~~~~  189 (277)
T 1o54_A          174 SEG---FD-------EKDVDALFLDV  189 (277)
T ss_dssp             GGC---CS-------CCSEEEEEECC
T ss_pred             HHc---cc-------CCccCEEEECC
Confidence            653   21       23699999854

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.10  E-value=3.1e-05  Score=76.69  Aligned_cols=95  Identities=18%  Similarity=0.092  Sum_probs=72.4

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      .|.|...++..+. ..++..++|..+|.|..+..++...++...++|+|+|+.+++.|+++++..+.      .++++++
T Consensus       188 ~~~la~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~------~~i~~~~  260 (354)
T 3tma_A          188 TPVLAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL------SWIRFLR  260 (354)
T ss_dssp             CHHHHHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC------TTCEEEE
T ss_pred             CHHHHHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC------CceEEEe
Confidence            3445666666665 56888999999999999999998762335699999999999999999887653      1678889


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      .++.++..   .      ...+|.|+.|.=|
T Consensus       261 ~D~~~~~~---~------~~~~D~Ii~npPy  282 (354)
T 3tma_A          261 ADARHLPR---F------FPEVDRILANPPH  282 (354)
T ss_dssp             CCGGGGGG---T------CCCCSEEEECCCS
T ss_pred             CChhhCcc---c------cCCCCEEEECCCC
Confidence            98876521   1      1247999998766

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.04  E-value=1.7e-05  Score=78.14  Aligned_cols=90  Identities=20%  Similarity=0.223  Sum_probs=72.7

Q ss_pred             hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH
Q 012954          126 DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV  205 (452)
Q Consensus       126 ~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~  205 (452)
                      ..|. ++++..++|+..|.||.|..+++.+++.++|+|+|+++.+++.++++++.++.      .++++++.++..+.. 
T Consensus       112 ~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~------~~v~~~~~D~~~~~~-  183 (315)
T 1ixk_A          112 VALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLHIGE-  183 (315)
T ss_dssp             HHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGGGGG-
T ss_pred             HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC------CeEEEEECChhhccc-
Confidence            4444 46889999999999999999999987767899999999999999999987753      268889988876532 


Q ss_pred             HhhhcccccccCccEEEEccCCCccC
Q 012954          206 LGQIDENILRSGVDAILMDLGMSSMQ  231 (452)
Q Consensus       206 L~~~~~~l~~~~VDGILfDLGvSS~Q  231 (452)
                         .     ...+|.|++|.-+|...
T Consensus       184 ---~-----~~~fD~Il~d~Pcsg~g  201 (315)
T 1ixk_A          184 ---L-----NVEFDKILLDAPCTGSG  201 (315)
T ss_dssp             ---G-----CCCEEEEEEECCTTSTT
T ss_pred             ---c-----cccCCEEEEeCCCCCcc
Confidence               1     13699999997776543

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.02  E-value=2.3e-05  Score=71.70  Aligned_cols=88  Identities=17%  Similarity=0.229  Sum_probs=67.8

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      -+.+.+++.+....++..++|.-.|.|..+..+++.+|. ..++|+|.++.+++.|++++...        .++.+++++
T Consensus        30 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d  100 (234)
T 3dtn_A           30 DFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKMLEIAKNRFRGN--------LKVKYIEAD  100 (234)
T ss_dssp             HHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTCSC--------TTEEEEESC
T ss_pred             HHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHhhccC--------CCEEEEeCc
Confidence            345677777753457789999999999999999999875 47999999999999999877543        167888888


Q ss_pred             cchHHHHHhhhcccccccCccEEEEcc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +..+.          ....+|.|+...
T Consensus       101 ~~~~~----------~~~~fD~v~~~~  117 (234)
T 3dtn_A          101 YSKYD----------FEEKYDMVVSAL  117 (234)
T ss_dssp             TTTCC----------CCSCEEEEEEES
T ss_pred             hhccC----------CCCCceEEEEeC
Confidence            76542          013689888753

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.98  E-value=1.9e-05  Score=76.05  Aligned_cols=77  Identities=17%  Similarity=0.125  Sum_probs=61.0

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      +++..++|+.+|.|+.+..+++....  +|+|+|+++.|++.|+++++..+.     ..++++++++..++..       
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~-----~~~v~~~~~D~~~~~~-------  189 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRDFPG-------  189 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTTCCC-------
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEECCHHHhcc-------
Confidence            47899999999999999999987554  699999999999999998876543     2358888888765421       


Q ss_pred             cccccCccEEEEcc
Q 012954          212 NILRSGVDAILMDL  225 (452)
Q Consensus       212 ~l~~~~VDGILfDL  225 (452)
                         ...+|.|++|.
T Consensus       190 ---~~~fD~Vi~~~  200 (278)
T 2frn_A          190 ---ENIADRILMGY  200 (278)
T ss_dssp             ---CSCEEEEEECC
T ss_pred             ---cCCccEEEECC
Confidence               13699998853

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.97  E-value=2.6e-05  Score=71.16  Aligned_cols=96  Identities=8%  Similarity=0.024  Sum_probs=70.5

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      .+++..|....++..++|.-.|.|+++..+++.+++.++|+|+|+++.+++.|+++++..+.     ..++++++++...
T Consensus        47 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~  121 (223)
T 3duw_A           47 GKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL-----NDRVEVRTGLALD  121 (223)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHH
T ss_pred             HHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHH
Confidence            33444442223678999999999999999999988667899999999999999999887654     2368899988765


Q ss_pred             HHHHHhhhcccccccCccEEEEccC
Q 012954          202 IKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      ....+...+    ...+|.|++|..
T Consensus       122 ~~~~~~~~~----~~~fD~v~~d~~  142 (223)
T 3duw_A          122 SLQQIENEK----YEPFDFIFIDAD  142 (223)
T ss_dssp             HHHHHHHTT----CCCCSEEEECSC
T ss_pred             HHHHHHhcC----CCCcCEEEEcCC
Confidence            433222111    136999998743

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.94  E-value=5.5e-05  Score=66.32  Aligned_cols=96  Identities=10%  Similarity=0.052  Sum_probs=71.2

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      +.+++.+++.+....++..++|...|.|+.+..+++. +. .+|+|+|.++.+++.|+++++..+.     ..+++++++
T Consensus        29 ~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~  101 (187)
T 2fhp_A           29 DKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GM-DKSICIEKNFAALKVIKENIAITKE-----PEKFEVRKM  101 (187)
T ss_dssp             HHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEES
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHHHHHhCC-----CcceEEEEC
Confidence            3467777777753347789999999999999988873 33 5799999999999999998876542     237889999


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEcc
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++.+....+...     ...+|.|++|.
T Consensus       102 d~~~~~~~~~~~-----~~~fD~i~~~~  124 (187)
T 2fhp_A          102 DANRALEQFYEE-----KLQFDLVLLDP  124 (187)
T ss_dssp             CHHHHHHHHHHT-----TCCEEEEEECC
T ss_pred             cHHHHHHHHHhc-----CCCCCEEEECC
Confidence            887643322211     23699999874

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.93  E-value=2.7e-05  Score=70.99  Aligned_cols=96  Identities=17%  Similarity=0.022  Sum_probs=69.2

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      .+++..+....++..++|...|.|+.+..+++.+++.++|+|+|+++.+++.|+++++..+.     ..++++++++..+
T Consensus        53 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~  127 (225)
T 3tr6_A           53 AQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL-----SDKIGLRLSPAKD  127 (225)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHH
T ss_pred             HHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEEeCCHHH
Confidence            34444443223678999999999999999999888667899999999999999999887654     2368888888754


Q ss_pred             HHHHHhhhcccccccCccEEEEcc
Q 012954          202 IKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ....+...+   ....+|.|++|.
T Consensus       128 ~~~~~~~~~---~~~~fD~v~~~~  148 (225)
T 3tr6_A          128 TLAELIHAG---QAWQYDLIYIDA  148 (225)
T ss_dssp             HHHHHHTTT---CTTCEEEEEECS
T ss_pred             HHHHhhhcc---CCCCccEEEECC
Confidence            322222110   013699999765

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.92  E-value=7.3e-05  Score=67.26  Aligned_cols=75  Identities=11%  Similarity=0.040  Sum_probs=57.7

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++..++|.-.|.|..+..+.+ .+. ..|+|+|+++.+++.|++++...+.      .++.+++.++...   .     
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~-~~~-~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~---~-----  122 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHK-LGA-KSVLATDISDESMTAAEENAALNGI------YDIALQKTSLLAD---V-----  122 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHH-TTC-SEEEEEESCHHHHHHHHHHHHHTTC------CCCEEEESSTTTT---C-----
T ss_pred             cCCCEEEEECCCCCHHHHHHHH-CCC-CEEEEEECCHHHHHHHHHHHHHcCC------CceEEEecccccc---C-----
Confidence            3678999999999988888654 554 4799999999999999998876543      1377788877542   1     


Q ss_pred             cccccCccEEEEcc
Q 012954          212 NILRSGVDAILMDL  225 (452)
Q Consensus       212 ~l~~~~VDGILfDL  225 (452)
                         ...+|.|+.+.
T Consensus       123 ---~~~fD~i~~~~  133 (205)
T 3grz_A          123 ---DGKFDLIVANI  133 (205)
T ss_dssp             ---CSCEEEEEEES
T ss_pred             ---CCCceEEEECC
Confidence               24699999874

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.92  E-value=2.5e-05  Score=73.60  Aligned_cols=93  Identities=13%  Similarity=0.086  Sum_probs=69.6

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      .+++..|....++..++|...|.|+.+..+++.+++.++|+|+|+++.+++.|+++++..+.     ..+++++.++..+
T Consensus        52 ~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~  126 (248)
T 3tfw_A           52 GQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV-----DQRVTLREGPALQ  126 (248)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHH
T ss_pred             HHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHH
Confidence            44455442223678999999999999999999988667899999999999999999887653     2378888888765


Q ss_pred             HHHHHhhhcccccccCccEEEEcc
Q 012954          202 IKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      .   +....   ....+|.|++|.
T Consensus       127 ~---l~~~~---~~~~fD~V~~d~  144 (248)
T 3tfw_A          127 S---LESLG---ECPAFDLIFIDA  144 (248)
T ss_dssp             H---HHTCC---SCCCCSEEEECS
T ss_pred             H---HHhcC---CCCCeEEEEECC
Confidence            3   22221   013699999874

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.92  E-value=2.4e-05  Score=70.28  Aligned_cols=89  Identities=12%  Similarity=0.129  Sum_probs=67.6

Q ss_pred             ccchHHHHhhccCCC--CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          118 PVMLGEVLDVFSSSR--TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       118 PVLl~Evl~~L~~~~--~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      ..++..+++.+....  ++..++|.-.|.|..+..+++..|. ..++|+|.++.+++.|+++++..+.      .+++++
T Consensus        48 ~~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~  120 (207)
T 1jsx_A           48 EMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPE-AHFTLLDSLGKRVRFLRQVQHELKL------ENIEPV  120 (207)
T ss_dssp             CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTC------SSEEEE
T ss_pred             HHHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEE
Confidence            346777777775211  4789999999999999999988876 4799999999999999998876543      248888


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEE
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILM  223 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILf  223 (452)
                      +.++..+.   .       ...+|.|+.
T Consensus       121 ~~d~~~~~---~-------~~~~D~i~~  138 (207)
T 1jsx_A          121 QSRVEEFP---S-------EPPFDGVIS  138 (207)
T ss_dssp             ECCTTTSC---C-------CSCEEEEEC
T ss_pred             ecchhhCC---c-------cCCcCEEEE
Confidence            88876531   1       136888876

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.92  E-value=6.4e-05  Score=65.91  Aligned_cols=92  Identities=10%  Similarity=0.103  Sum_probs=69.5

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .+...+++.+....++..++|.-.|.|..+..+++. +. ..|+|+|.++.+++.|+++++..+.     ..++++++++
T Consensus        17 ~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d   89 (177)
T 2esr_A           17 KVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GM-SAAVLVEKNRKAQAIIQDNIIMTKA-----ENRFTLLKME   89 (177)
T ss_dssp             -CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TC-CEEEEECCCHHHHHHHHHHHHTTTC-----GGGEEEECSC
T ss_pred             HHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECc
Confidence            367777888853347789999999999999998876 43 5799999999999999998876542     2368899988


Q ss_pred             cchHHHHHhhhcccccccCccEEEEcc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +.+.   +...     ...+|.|++|.
T Consensus        90 ~~~~---~~~~-----~~~fD~i~~~~  108 (177)
T 2esr_A           90 AERA---IDCL-----TGRFDLVFLDP  108 (177)
T ss_dssp             HHHH---HHHB-----CSCEEEEEECC
T ss_pred             HHHh---HHhh-----cCCCCEEEECC
Confidence            7653   2221     13599999873

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=97.92  E-value=3.5e-05  Score=80.77  Aligned_cols=88  Identities=11%  Similarity=0.114  Sum_probs=72.7

Q ss_pred             hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH
Q 012954          126 DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV  205 (452)
Q Consensus       126 ~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~  205 (452)
                      ..|. +.++..++|+..|.||.|..|++.+++.+.|+|+|+++.+++.++++++.++.      . +.+++.+...+...
T Consensus        95 ~~L~-~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~------~-v~~~~~Da~~l~~~  166 (464)
T 3m6w_A           95 VLLD-PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA------P-LAVTQAPPRALAEA  166 (464)
T ss_dssp             HHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC------C-CEEECSCHHHHHHH
T ss_pred             HhcC-cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------e-EEEEECCHHHhhhh
Confidence            3454 46889999999999999999999988878999999999999999999988753      2 77888887776543


Q ss_pred             HhhhcccccccCccEEEEccCCCc
Q 012954          206 LGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       206 L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      ..        ..+|.||+|-=+|.
T Consensus       167 ~~--------~~FD~Il~D~PcSg  182 (464)
T 3m6w_A          167 FG--------TYFHRVLLDAPCSG  182 (464)
T ss_dssp             HC--------SCEEEEEEECCCCC
T ss_pred             cc--------ccCCEEEECCCcCC
Confidence            32        36999999988874

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.88  E-value=5.3e-05  Score=79.48  Aligned_cols=84  Identities=13%  Similarity=0.054  Sum_probs=70.9

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|++.|.||-|..|++.+++.+.|+|+|+++.+++.++++++.++.      .++.+++.+...+.....     
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~------~nv~~~~~D~~~~~~~~~-----  185 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI------SNVALTHFDGRVFGAAVP-----  185 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCCSTTHHHHST-----
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHhhhhcc-----
Confidence            889999999999999999999987778999999999999999999988754      268889998887653321     


Q ss_pred             ccccCccEEEEccCCCcc
Q 012954          213 ILRSGVDAILMDLGMSSM  230 (452)
Q Consensus       213 l~~~~VDGILfDLGvSS~  230 (452)
                         ..+|.||+|-=+|..
T Consensus       186 ---~~fD~Il~D~PcSg~  200 (479)
T 2frx_A          186 ---EMFDAILLDAPCSGE  200 (479)
T ss_dssp             ---TCEEEEEEECCCCCG
T ss_pred             ---ccCCEEEECCCcCCc
Confidence               369999999877753

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.84  E-value=0.00014  Score=61.90  Aligned_cols=88  Identities=17%  Similarity=0.138  Sum_probs=61.2

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      +.++++.+....++..++|...|.|+.+..+++.+++...++|+|.++ +++.                .++.+++.++.
T Consensus        10 l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------------~~~~~~~~d~~   72 (180)
T 1ej0_A           10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------------VGVDFLQGDFR   72 (180)
T ss_dssp             HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------------TTEEEEESCTT
T ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------------CcEEEEEcccc
Confidence            556677665345788999999999999999998865446799999998 5421                15677888887


Q ss_pred             hHHHH--HhhhcccccccCccEEEEccCCC
Q 012954          201 HIKSV--LGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       201 ~i~~~--L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      +....  +...   +....+|.|+.|.-+.
T Consensus        73 ~~~~~~~~~~~---~~~~~~D~i~~~~~~~   99 (180)
T 1ej0_A           73 DELVMKALLER---VGDSKVQVVMSDMAPN   99 (180)
T ss_dssp             SHHHHHHHHHH---HTTCCEEEEEECCCCC
T ss_pred             cchhhhhhhcc---CCCCceeEEEECCCcc
Confidence            65421  1110   0124699999886654

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.83  E-value=4.8e-05  Score=71.11  Aligned_cols=60  Identities=20%  Similarity=0.193  Sum_probs=46.3

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh--CCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA--HPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~--~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      |+..+++.+. ..++..++|..+|.|..+..+++.  .+. ..|+|+|+++.+++.|++++...
T Consensus        39 l~~~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~-~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           39 IFQRALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSL-RQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             HHHHHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGE-EEEEEEESCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCC-CeEEEEECCHHHHHHHHHHHHHh
Confidence            3445555553 235678999999999999999887  443 47999999999999999877543

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.82  E-value=2.4e-05  Score=75.50  Aligned_cols=93  Identities=11%  Similarity=0.080  Sum_probs=66.6

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCH-------HHHHHHHHHHhhhccCCCCCCc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDP-------SALAKARAHLNSLLHGQAHPHL  190 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~-------~Ai~~Ak~rL~~~~~~~~~~~~  190 (452)
                      ..|+.+++   . ..++..++|+|+|.|..+..+.+. +  ++|+|+|+++       ++++.|+++++..+.     ..
T Consensus        72 ~~~l~~a~---~-~~~~~~VLDlgcG~G~~a~~lA~~-g--~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~-----~~  139 (258)
T 2r6z_A           72 GELIAKAV---N-HTAHPTVWDATAGLGRDSFVLASL-G--LTVTAFEQHPAVACLLSDGIRRALLNPETQDT-----AA  139 (258)
T ss_dssp             -CHHHHHT---T-GGGCCCEEETTCTTCHHHHHHHHT-T--CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH-----HT
T ss_pred             hHHHHHHh---C-cCCcCeEEEeeCccCHHHHHHHHh-C--CEEEEEECChhhhHHHHHHHHHHHhHHHhhCC-----cc
Confidence            55666665   2 236789999999999888887774 2  4699999999       999999887655432     12


Q ss_pred             eEEEEccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          191 KTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       191 r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +++++++++.++...+...+     ..+|.|++|-.+
T Consensus       140 ri~~~~~d~~~~l~~~~~~~-----~~fD~V~~dP~~  171 (258)
T 2r6z_A          140 RINLHFGNAAEQMPALVKTQ-----GKPDIVYLDPMY  171 (258)
T ss_dssp             TEEEEESCHHHHHHHHHHHH-----CCCSEEEECCCC
T ss_pred             CeEEEECCHHHHHHhhhccC-----CCccEEEECCCC
Confidence            58999999876533232110     369999998766

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.82  E-value=9.5e-05  Score=68.40  Aligned_cols=98  Identities=15%  Similarity=0.208  Sum_probs=75.6

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh-ccCCCCCCc
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL-LHGQAHPHL  190 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~-~~~~~~~~~  190 (452)
                      .....+|-.+..+++.+. ..++..++|+..|.|..+..+++.+++.++|+|+|.++.+++.|+++++.+ +.      .
T Consensus        76 ~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~------~  148 (258)
T 2pwy_A           76 SATPTYPKDASAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV------E  148 (258)
T ss_dssp             SSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC------C
T ss_pred             ccccccchHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC------C
Confidence            344456666678888886 568899999999999999999988554568999999999999999988765 42      2


Q ss_pred             eEEEEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          191 KTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       191 r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++.+++.++.+..  +       ....+|.|++|+
T Consensus       149 ~v~~~~~d~~~~~--~-------~~~~~D~v~~~~  174 (258)
T 2pwy_A          149 NVRFHLGKLEEAE--L-------EEAAYDGVALDL  174 (258)
T ss_dssp             CEEEEESCGGGCC--C-------CTTCEEEEEEES
T ss_pred             CEEEEECchhhcC--C-------CCCCcCEEEECC
Confidence            6888888876531  1       123699999864

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.81  E-value=4.8e-05  Score=74.58  Aligned_cols=108  Identities=12%  Similarity=0.123  Sum_probs=77.0

Q ss_pred             hcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhc----cCC
Q 012954          110 QQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLL----HGQ  185 (452)
Q Consensus       110 ~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~----~~~  185 (452)
                      .+.....+|-+...+++.+. ..++..++|+-.|.|.++..+++.+++.++|+|+|+++.+++.|+++++.++    .+.
T Consensus        83 ~~~~~~~~~~~~~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~  161 (336)
T 2b25_A           83 KRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSH  161 (336)
T ss_dssp             CCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCCcccCHHHHHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccccc
Confidence            33444467778888899886 5688999999999999999999886555689999999999999999887653    000


Q ss_pred             -CCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          186 -AHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       186 -~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                       +....++++++++..+...-+.       ...+|.|++|.
T Consensus       162 ~~~~~~~v~~~~~d~~~~~~~~~-------~~~fD~V~~~~  195 (336)
T 2b25_A          162 VEEWPDNVDFIHKDISGATEDIK-------SLTFDAVALDM  195 (336)
T ss_dssp             SSCCCCCEEEEESCTTCCC--------------EEEEEECS
T ss_pred             ccccCCceEEEECChHHcccccC-------CCCeeEEEECC
Confidence             0001368888888765321111       23599999875

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.80  E-value=5.3e-05  Score=77.51  Aligned_cols=91  Identities=21%  Similarity=0.273  Sum_probs=73.2

Q ss_pred             HhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH
Q 012954          125 LDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS  204 (452)
Q Consensus       125 l~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~  204 (452)
                      ...|. +.++..++|+..|.||.|..+++..++ +.|+|+|+++.+++.++++++.++.       ++.+++.++..+..
T Consensus       239 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~-------~~~~~~~D~~~~~~  309 (429)
T 1sqg_A          239 MTWLA-PQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-------KATVKQGDGRYPSQ  309 (429)
T ss_dssp             HHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-------CCEEEECCTTCTHH
T ss_pred             HHHcC-CCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCC-------CeEEEeCchhhchh
Confidence            44454 468899999999999999999999876 6899999999999999999887643       46778888877654


Q ss_pred             HHhhhcccccccCccEEEEccCCCccC
Q 012954          205 VLGQIDENILRSGVDAILMDLGMSSMQ  231 (452)
Q Consensus       205 ~L~~~~~~l~~~~VDGILfDLGvSS~Q  231 (452)
                      .+.       ...+|.||+|--+|..-
T Consensus       310 ~~~-------~~~fD~Vl~D~Pcsg~g  329 (429)
T 1sqg_A          310 WCG-------EQQFDRILLDAPCSATG  329 (429)
T ss_dssp             HHT-------TCCEEEEEEECCCCCGG
T ss_pred             hcc-------cCCCCEEEEeCCCCccc
Confidence            332       13699999999888653

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.78  E-value=2.3e-05  Score=76.17  Aligned_cols=97  Identities=11%  Similarity=0.019  Sum_probs=65.9

Q ss_pred             hHHHHhhccCCCCC--CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCC---CceEEEE
Q 012954          121 LGEVLDVFSSSRTI--TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHP---HLKTHTF  195 (452)
Q Consensus       121 l~Evl~~L~~~~~g--giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~---~~r~~li  195 (452)
                      -+.+++.+. ..++  ..++|+|.|.|..+..+++. +  ++|+++|+++.+.+.+++.++....+.+..   ..+++++
T Consensus        75 ~e~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~-g--~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~  150 (258)
T 2oyr_A           75 GEAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV-G--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI  150 (258)
T ss_dssp             GSHHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH-T--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEE
T ss_pred             HHHHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEE
Confidence            444555664 3456  89999999999999999887 2  359999999987666666554332111111   1378999


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      +++..++   +....     ..+|.|++|-+|..
T Consensus       151 ~~D~~~~---L~~~~-----~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          151 HASSLTA---LTDIT-----PRPQVVYLDPMFPH  176 (258)
T ss_dssp             ESCHHHH---STTCS-----SCCSEEEECCCCCC
T ss_pred             ECCHHHH---HHhCc-----ccCCEEEEcCCCCC
Confidence            9987653   44321     25999999999843

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.76  E-value=4.6e-05  Score=78.62  Aligned_cols=92  Identities=15%  Similarity=0.175  Sum_probs=72.3

Q ss_pred             HhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH
Q 012954          125 LDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS  204 (452)
Q Consensus       125 l~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~  204 (452)
                      ...|. +.++..++|+..|.||.|..+++.+++.+.|+|+|+++.+++.++++++.++.      .++++++.++..+..
T Consensus       252 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~~~  324 (450)
T 2yxl_A          252 SIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI------KIVKPLVKDARKAPE  324 (450)
T ss_dssp             HHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCTTCCSS
T ss_pred             HHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEEEcChhhcch
Confidence            34454 46889999999999999999999988767899999999999999999887653      268888888765421


Q ss_pred             HHhhhcccccccCccEEEEccCCCcc
Q 012954          205 VLGQIDENILRSGVDAILMDLGMSSM  230 (452)
Q Consensus       205 ~L~~~~~~l~~~~VDGILfDLGvSS~  230 (452)
                      .   .    ....+|.||+|-=+|..
T Consensus       325 ~---~----~~~~fD~Vl~D~Pcsg~  343 (450)
T 2yxl_A          325 I---I----GEEVADKVLLDAPCTSS  343 (450)
T ss_dssp             S---S----CSSCEEEEEEECCCCCG
T ss_pred             h---h----ccCCCCEEEEcCCCCCC
Confidence            1   1    11369999999887754

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=97.75  E-value=8.2e-05  Score=69.15  Aligned_cols=96  Identities=11%  Similarity=0.129  Sum_probs=70.7

Q ss_pred             ccccchHHHHhhcc---CCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceE
Q 012954          116 HIPVMLGEVLDVFS---SSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKT  192 (452)
Q Consensus       116 H~PVLl~Evl~~L~---~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~  192 (452)
                      ++|++-.++...|.   ...++..++|...|.|..+..+++..+. ++|+|+|+++.+++.|+++++..+.     ..++
T Consensus        51 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v  124 (232)
T 3ntv_A           51 EVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDD-IHVTTIERNETMIQYAKQNLATYHF-----ENQV  124 (232)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTT-CEEEEEECCHHHHHHHHHHHHHTTC-----TTTE
T ss_pred             CCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC-----CCcE
Confidence            55665554444332   1236789999999999999999986664 6899999999999999999887653     2378


Q ss_pred             EEEccCcchHHH-HHhhhcccccccCccEEEEcc
Q 012954          193 HTFAKNFRHIKS-VLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       193 ~li~~nF~~i~~-~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +++++++.+... .+.        ..+|.|++|.
T Consensus       125 ~~~~~d~~~~~~~~~~--------~~fD~V~~~~  150 (232)
T 3ntv_A          125 RIIEGNALEQFENVND--------KVYDMIFIDA  150 (232)
T ss_dssp             EEEESCGGGCHHHHTT--------SCEEEEEEET
T ss_pred             EEEECCHHHHHHhhcc--------CCccEEEEcC
Confidence            999998865422 221        3699999873

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.74  E-value=0.0001  Score=69.46  Aligned_cols=99  Identities=11%  Similarity=0.087  Sum_probs=76.2

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh-c-cCCCCCC
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL-L-HGQAHPH  189 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~-~-~~~~~~~  189 (452)
                      .....+|-++..+++.+. ..++..++|.-.|.|..+..+++.+++.++|+|+|+++++++.|+++++.+ + .     .
T Consensus        79 ~~~~~~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~-----~  152 (280)
T 1i9g_A           79 GPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP-----P  152 (280)
T ss_dssp             CSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC-----C
T ss_pred             cceeecHHHHHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC-----C
Confidence            334456777888888886 568899999999999999999987655568999999999999999988765 3 1     1


Q ss_pred             ceEEEEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          190 LKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       190 ~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      .++.+++.++.+..  +       ....+|.|++|+
T Consensus       153 ~~v~~~~~d~~~~~--~-------~~~~~D~v~~~~  179 (280)
T 1i9g_A          153 DNWRLVVSDLADSE--L-------PDGSVDRAVLDM  179 (280)
T ss_dssp             TTEEEECSCGGGCC--C-------CTTCEEEEEEES
T ss_pred             CcEEEEECchHhcC--C-------CCCceeEEEECC
Confidence            26888888876531  1       123699999864

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.73  E-value=5.9e-05  Score=69.24  Aligned_cols=85  Identities=11%  Similarity=0.090  Sum_probs=65.2

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|.-.|.|+.+..+++.+++.++|+|+|+++.+++.|+++++..+.     ..++++++++..+.   +......
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~---l~~~~~~  129 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL-----QDKVTILNGASQDL---IPQLKKK  129 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHH---GGGTTTT
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC-----CCceEEEECCHHHH---HHHHHHh
Confidence            568999999999999999998887667899999999999999999887653     24799999887553   3322100


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                      .....+|.|++|.
T Consensus       130 ~~~~~fD~V~~d~  142 (221)
T 3u81_A          130 YDVDTLDMVFLDH  142 (221)
T ss_dssp             SCCCCCSEEEECS
T ss_pred             cCCCceEEEEEcC
Confidence            0014699999884

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.71  E-value=0.00034  Score=64.02  Aligned_cols=87  Identities=10%  Similarity=0.052  Sum_probs=66.4

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ...+++.+. ..++..++|.-.|.|..+..+++.   ..+|+|+|+++++++.|+++++.++.     ..++.++++++.
T Consensus        44 ~~~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~  114 (204)
T 3njr_A           44 RALTLAALA-PRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGL-----SPRMRAVQGTAP  114 (204)
T ss_dssp             HHHHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCTT
T ss_pred             HHHHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCC-----CCCEEEEeCchh
Confidence            345566775 468899999999999999888876   35799999999999999998877653     126888898876


Q ss_pred             hHHHHHhhhcccccccCccEEEEcc
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +.   +...      ..+|.|+++-
T Consensus       115 ~~---~~~~------~~~D~v~~~~  130 (204)
T 3njr_A          115 AA---LADL------PLPEAVFIGG  130 (204)
T ss_dssp             GG---GTTS------CCCSEEEECS
T ss_pred             hh---cccC------CCCCEEEECC
Confidence            52   2221      3699998654

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.71  E-value=0.00016  Score=64.41  Aligned_cols=91  Identities=13%  Similarity=0.074  Sum_probs=66.8

Q ss_pred             chHHHHhhccC--CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          120 MLGEVLDVFSS--SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       120 Ll~Evl~~L~~--~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      +...+++.|..  ..++..++|...|.|..+..+++. + ..+|+|+|+|+.+++.|+++++..+.      .+++++++
T Consensus        29 ~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~  100 (189)
T 3p9n_A           29 VRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-G-AASVLFVESDQRSAAVIARNIEALGL------SGATLRRG  100 (189)
T ss_dssp             HHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEECCHHHHHHHHHHHHHHTC------SCEEEEES
T ss_pred             HHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-C-CCeEEEEECCHHHHHHHHHHHHHcCC------CceEEEEc
Confidence            34445555531  137889999999999999988874 3 34799999999999999998877643      36889999


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEcc
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +..++...+.       ...+|.|++|.
T Consensus       101 d~~~~~~~~~-------~~~fD~i~~~~  121 (189)
T 3p9n_A          101 AVAAVVAAGT-------TSPVDLVLADP  121 (189)
T ss_dssp             CHHHHHHHCC-------SSCCSEEEECC
T ss_pred             cHHHHHhhcc-------CCCccEEEECC
Confidence            8876532221       24799999874

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.67  E-value=6.7e-05  Score=66.73  Aligned_cols=97  Identities=20%  Similarity=0.092  Sum_probs=56.9

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      ..|++.+++.+....++..++|...|.|..+..+++..+. ..++|+|+++.+++.|++++...+.       +++++++
T Consensus        15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~   86 (215)
T 4dzr_A           15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPG-VSVTAVDLSMDALAVARRNAERFGA-------VVDWAAA   86 (215)
T ss_dssp             HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTT-EEEEEEECC--------------------------CCHH
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhCC-------ceEEEEc
Confidence            3478888888863257889999999999999999998765 4799999999999999987765421       4566666


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ++.+   .+....  .....+|.|+.|.-|
T Consensus        87 d~~~---~~~~~~--~~~~~fD~i~~npp~  111 (215)
T 4dzr_A           87 DGIE---WLIERA--ERGRPWHAIVSNPPY  111 (215)
T ss_dssp             HHHH---HHHHHH--HTTCCBSEEEECCCC
T ss_pred             chHh---hhhhhh--hccCcccEEEECCCC
Confidence            5544   222100  001479999998765

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.67  E-value=0.00037  Score=64.11  Aligned_cols=80  Identities=11%  Similarity=0.205  Sum_probs=64.9

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++..++|.-+|.|.++..+.+..|. ..++|+|+++.+++.|+++++..+.      .++.+++++..++..++..   
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~giD~s~~~l~~a~~~~~~~~~------~nv~~~~~d~~~l~~~~~~---  106 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADTLTDVFEP---  106 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGGHHHHCCT---
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCC-CCEEEEEechHHHHHHHHHHHHcCC------CCEEEEeCCHHHHHhhcCc---
Confidence            36789999999999999999988876 4699999999999999998876543      3689999998887655432   


Q ss_pred             cccccCccEEEEcc
Q 012954          212 NILRSGVDAILMDL  225 (452)
Q Consensus       212 ~l~~~~VDGILfDL  225 (452)
                          ..+|.|++++
T Consensus       107 ----~~~d~v~~~~  116 (213)
T 2fca_A          107 ----GEVKRVYLNF  116 (213)
T ss_dssp             ----TSCCEEEEES
T ss_pred             ----CCcCEEEEEC
Confidence                3689887653

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.65  E-value=0.00015  Score=62.42  Aligned_cols=92  Identities=11%  Similarity=0.025  Sum_probs=67.1

Q ss_pred             cchHHHHhhccCC-CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          119 VMLGEVLDVFSSS-RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       119 VLl~Evl~~L~~~-~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      .+.+.+++.+... .++..++|...|.|..+..+++..+   .|+|+|.++.+++.|++++...+.       +++++++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~   95 (171)
T 1ws6_A           26 RLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGL-------GARVVAL   95 (171)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTC-------CCEEECS
T ss_pred             HHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCC-------ceEEEec
Confidence            3556667666421 1678999999999999999987643   299999999999999998876532       6788899


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEcc
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++.+....+...     ...+|.|+.|.
T Consensus        96 d~~~~~~~~~~~-----~~~~D~i~~~~  118 (171)
T 1ws6_A           96 PVEVFLPEAKAQ-----GERFTVAFMAP  118 (171)
T ss_dssp             CHHHHHHHHHHT-----TCCEEEEEECC
T ss_pred             cHHHHHHhhhcc-----CCceEEEEECC
Confidence            887643222211     12699999874

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=97.65  E-value=0.00012  Score=72.25  Aligned_cols=91  Identities=20%  Similarity=0.201  Sum_probs=65.1

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCC----CEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPEL----KLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~----g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      ++.++++.+..+.++..++|.++|.|+-+..+++.++..    ..++|+|+|+.+++.|+.++...+.       ++.++
T Consensus       117 ~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-------~~~i~  189 (344)
T 2f8l_A          117 IVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------KMTLL  189 (344)
T ss_dssp             HHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------CCEEE
T ss_pred             HHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-------CceEE
Confidence            345566655323467799999999999999999887543    5799999999999999988765432       45667


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +++.-.      ..    ....+|.|+.|.=+
T Consensus       190 ~~D~l~------~~----~~~~fD~Ii~NPPf  211 (344)
T 2f8l_A          190 HQDGLA------NL----LVDPVDVVISDLPV  211 (344)
T ss_dssp             ESCTTS------CC----CCCCEEEEEEECCC
T ss_pred             ECCCCC------cc----ccCCccEEEECCCC
Confidence            766432      10    12368999988544

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.63  E-value=0.00021  Score=67.00  Aligned_cols=85  Identities=11%  Similarity=-0.052  Sum_probs=64.7

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      +...++|.-.|.|+.+..+++.+++.++|+++|+++.+++.|+++++..+.     ..++++++++..++...+...+  
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~~l~~l~~~~--  142 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV-----EHKINFIESDAMLALDNLLQGQ--  142 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHST--
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhcc--
Confidence            567999999999999999999988668999999999999999999877543     2478888887655422221110  


Q ss_pred             ccccCccEEEEc
Q 012954          213 ILRSGVDAILMD  224 (452)
Q Consensus       213 l~~~~VDGILfD  224 (452)
                      .....+|.|++|
T Consensus       143 ~~~~~fD~I~~d  154 (237)
T 3c3y_A          143 ESEGSYDFGFVD  154 (237)
T ss_dssp             TCTTCEEEEEEC
T ss_pred             CCCCCcCEEEEC
Confidence            001369999986

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=97.63  E-value=0.0002  Score=68.54  Aligned_cols=118  Identities=13%  Similarity=0.100  Sum_probs=81.7

Q ss_pred             cCCccCCchhhhhhcCCCCcccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHH
Q 012954           97 TRSNKDYDYESIIQQQQSSHIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR  175 (452)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak  175 (452)
                      +.|...|+...|....  .++|- +.+.+.+.+.  .++..++|.-+|.|..+..+++.++....|+|+|+++.+++.|+
T Consensus         3 ~f~~~~~~~~~y~~~r--p~y~~~~~~~l~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~   78 (299)
T 3g5t_A            3 TFSASDFNSERYSSSR--PSYPSDFYKMIDEYHD--GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAE   78 (299)
T ss_dssp             GGGSTTCCHHHHHHHS--CCCCHHHHHHHHHHCC--SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHH
T ss_pred             cccccccChHHHhhcC--CCCCHHHHHHHHHHhc--CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH
Confidence            5678889988874432  24444 3444444443  47899999999999999999988744568999999999999999


Q ss_pred             HHHhhh-ccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954          176 AHLNSL-LHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       176 ~rL~~~-~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      ++++.. +.     ..++++++.++.++.  +.. ...+....+|.|+....
T Consensus        79 ~~~~~~~~~-----~~~v~~~~~d~~~~~--~~~-~~~~~~~~fD~V~~~~~  122 (299)
T 3g5t_A           79 VIKEGSPDT-----YKNVSFKISSSDDFK--FLG-ADSVDKQKIDMITAVEC  122 (299)
T ss_dssp             HHHHHCC-C-----CTTEEEEECCTTCCG--GGC-TTTTTSSCEEEEEEESC
T ss_pred             HHHHhccCC-----CCceEEEEcCHHhCC--ccc-cccccCCCeeEEeHhhH
Confidence            988764 11     237888999887653  111 00001146999998653

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=97.63  E-value=0.00039  Score=60.13  Aligned_cols=91  Identities=12%  Similarity=0.113  Sum_probs=70.1

Q ss_pred             CccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE
Q 012954          115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT  194 (452)
Q Consensus       115 ~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l  194 (452)
                      ...+-+...+++.+. ..++..++|.-.|.|..+..+++  + ...++|+|.++.+++.|+++++..+.      .++++
T Consensus        18 ~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~   87 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--R-CKFVYAIDYLDGAIEVTKQNLAKFNI------KNCQI   87 (183)
T ss_dssp             CCCHHHHHHHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--T-SSEEEEEECSHHHHHHHHHHHHHTTC------CSEEE
T ss_pred             cCHHHHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--c-CCeEEEEeCCHHHHHHHHHHHHHcCC------CcEEE
Confidence            344556777788886 45788999999999999999887  3 35799999999999999998877543      26888


Q ss_pred             EccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          195 FAKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       195 i~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++.++.+   .+..       ..+|.|+++.
T Consensus        88 ~~~d~~~---~~~~-------~~~D~i~~~~  108 (183)
T 2yxd_A           88 IKGRAED---VLDK-------LEFNKAFIGG  108 (183)
T ss_dssp             EESCHHH---HGGG-------CCCSEEEECS
T ss_pred             EECCccc---cccC-------CCCcEEEECC
Confidence            8888764   2221       3699999873

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.63  E-value=0.00043  Score=62.23  Aligned_cols=92  Identities=14%  Similarity=0.123  Sum_probs=72.8

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      .|-++..+++.+. ..++..++|.-.|.|..+..+++.   .++|+|+|+++.+++.|+++++.++.      .++++++
T Consensus        62 ~~~~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~  131 (210)
T 3lbf_A           62 QPYMVARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDL------HNVSTRH  131 (210)
T ss_dssp             CHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEE
T ss_pred             CHHHHHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCC------CceEEEE
Confidence            5667888888886 568899999999999999888887   35799999999999999999887643      2688888


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ++..+.   +..      ...+|.|+.+.++
T Consensus       132 ~d~~~~---~~~------~~~~D~i~~~~~~  153 (210)
T 3lbf_A          132 GDGWQG---WQA------RAPFDAIIVTAAP  153 (210)
T ss_dssp             SCGGGC---CGG------GCCEEEEEESSBC
T ss_pred             CCcccC---Ccc------CCCccEEEEccch
Confidence            877542   111      2469999998554

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=97.62  E-value=0.00027  Score=63.71  Aligned_cols=89  Identities=20%  Similarity=0.162  Sum_probs=70.1

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ..++++.+. ..++..++|.-.|.|..+..+++..++...|+|+|.++.+++.|++++...+.      .++.+++.++.
T Consensus        26 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~   98 (219)
T 3dh0_A           26 PEKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------KNVEVLKSEEN   98 (219)
T ss_dssp             HHHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECBTT
T ss_pred             HHHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEecccc
Confidence            467888886 46788999999999999999999874446799999999999999998877643      26888888876


Q ss_pred             hHHHHHhhhcccccccCccEEEEcc
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++.  +       ....+|.|+...
T Consensus        99 ~~~--~-------~~~~fD~v~~~~  114 (219)
T 3dh0_A           99 KIP--L-------PDNTVDFIFMAF  114 (219)
T ss_dssp             BCS--S-------CSSCEEEEEEES
T ss_pred             cCC--C-------CCCCeeEEEeeh
Confidence            542  1       124699999763

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=97.59  E-value=0.00023  Score=64.79  Aligned_cols=86  Identities=15%  Similarity=0.223  Sum_probs=67.0

Q ss_pred             HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH
Q 012954          123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI  202 (452)
Q Consensus       123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i  202 (452)
                      +..+.+.  .++..++|.-+|.|..+..+++..|. ..++|+|+++.+++.|++++...+.      .++.+++++..++
T Consensus        33 ~~~~~f~--~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~~~  103 (214)
T 1yzh_A           33 KWRDLFG--NDNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSDL  103 (214)
T ss_dssp             THHHHHT--SCCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSCG
T ss_pred             CHHHHcC--CCCCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCC------CCEEEEeCCHHHH
Confidence            4444553  36789999999999999999998876 4799999999999999998876543      3788899988764


Q ss_pred             HHHHhhhcccccccCccEEEEc
Q 012954          203 KSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       203 ~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      .+.+.       ...+|.|+++
T Consensus       104 ~~~~~-------~~~~D~i~~~  118 (214)
T 1yzh_A          104 TDYFE-------DGEIDRLYLN  118 (214)
T ss_dssp             GGTSC-------TTCCSEEEEE
T ss_pred             HhhcC-------CCCCCEEEEE
Confidence            33222       2369999987

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.58  E-value=0.0001  Score=66.85  Aligned_cols=78  Identities=19%  Similarity=0.043  Sum_probs=62.3

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|...|.|..+..+++.+++.++|+++|+++.+++.|+++++..+.     ..++++++++..+.   +...   
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~---~~~~---  124 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL-----IDRVELQVGDPLGI---AAGQ---  124 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG-----GGGEEEEESCHHHH---HTTC---
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CceEEEEEecHHHH---hccC---
Confidence            567999999999999999998887567899999999999999998876543     23688888876542   3322   


Q ss_pred             ccccCccEEEEc
Q 012954          213 ILRSGVDAILMD  224 (452)
Q Consensus       213 l~~~~VDGILfD  224 (452)
                        .. +|.|+.|
T Consensus       125 --~~-fD~v~~~  133 (210)
T 3c3p_A          125 --RD-IDILFMD  133 (210)
T ss_dssp             --CS-EEEEEEE
T ss_pred             --CC-CCEEEEc
Confidence              24 9999988

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.58  E-value=0.00015  Score=66.45  Aligned_cols=94  Identities=10%  Similarity=0.082  Sum_probs=68.4

Q ss_pred             ccchHHHHhhcc--CCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          118 PVMLGEVLDVFS--SSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       118 PVLl~Evl~~L~--~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      +.+...++..+.  ...++..++|+..|.|..+..+++.+++.++|+|+|.++.+++.++++.+..        .+++++
T Consensus        56 ~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--------~~v~~~  127 (227)
T 1g8a_A           56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--------RNIVPI  127 (227)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--------TTEEEE
T ss_pred             hhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--------CCCEEE
Confidence            666777744332  1357889999999999999999988765568999999999999988876543        268888


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++++.+...+ ...     ...+|.|+.|.
T Consensus       128 ~~d~~~~~~~-~~~-----~~~~D~v~~~~  151 (227)
T 1g8a_A          128 LGDATKPEEY-RAL-----VPKVDVIFEDV  151 (227)
T ss_dssp             ECCTTCGGGG-TTT-----CCCEEEEEECC
T ss_pred             EccCCCcchh-hcc-----cCCceEEEECC
Confidence            8888753211 111     13689999764

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.57  E-value=0.00018  Score=66.99  Aligned_cols=78  Identities=15%  Similarity=0.059  Sum_probs=59.4

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|.-.|.|..+..+....+. .+|+|+|.++.+++.|+++.+..+.      .++++++++..++... ...   
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~-~~~---  138 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAETFGQR-KDV---  138 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHHHTTC-TTT---
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEeccHHHhccc-ccc---
Confidence            5789999999999888888876665 5799999999999999998877643      2588899887654210 000   


Q ss_pred             ccccCccEEEE
Q 012954          213 ILRSGVDAILM  223 (452)
Q Consensus       213 l~~~~VDGILf  223 (452)
                        ...+|.|+.
T Consensus       139 --~~~fD~V~~  147 (240)
T 1xdz_A          139 --RESYDIVTA  147 (240)
T ss_dssp             --TTCEEEEEE
T ss_pred             --cCCccEEEE
Confidence              136999996

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.57  E-value=0.00025  Score=65.78  Aligned_cols=65  Identities=14%  Similarity=-0.083  Sum_probs=55.0

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      .++..++|...|.|..+..+++.+++.++|+++|+++.+++.|+++++..+.     ..++.+++++...
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~  123 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL-----ENKIFLKLGSALE  123 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHH
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCEEEEECCHHH
Confidence            3678999999999999999999888667899999999999999999876543     2368888888765

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.57  E-value=0.0002  Score=67.56  Aligned_cols=85  Identities=8%  Similarity=0.070  Sum_probs=65.6

Q ss_pred             CC-CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhh
Q 012954          131 SR-TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQI  209 (452)
Q Consensus       131 ~~-~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~  209 (452)
                      .. +++.++|...|.|+-+..+++..+.  .|+|+|+|+.+++.|+++++..+.     ..+++++++++.++...+.  
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~-----~~~v~~~~~D~~~~~~~~~--  116 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQL-----EDQIEIIEYDLKKITDLIP--  116 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTC-----TTTEEEECSCGGGGGGTSC--
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCC-----cccEEEEECcHHHhhhhhc--
Confidence            45 6889999999999999988877543  799999999999999998876543     2379999999887532221  


Q ss_pred             cccccccCccEEEEccCCCc
Q 012954          210 DENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       210 ~~~l~~~~VDGILfDLGvSS  229 (452)
                           ...+|.|+.|.-|..
T Consensus       117 -----~~~fD~Ii~npPy~~  131 (259)
T 3lpm_A          117 -----KERADIVTCNPPYFA  131 (259)
T ss_dssp             -----TTCEEEEEECCCC--
T ss_pred             -----cCCccEEEECCCCCC
Confidence                 247999999876543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.56  E-value=3.9e-05  Score=72.51  Aligned_cols=84  Identities=13%  Similarity=-0.018  Sum_probs=65.4

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|...|.|+.+..+++.+++.++|+|+|+++.+++.|+++++..+.     ..++++++++..++...+...+  
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~~l~~~~~~~--  132 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ-----EHKIKLRLGPALDTLHSLLNEG--  132 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHHH--
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHhhcc--
Confidence            567999999999999999998887668899999999999999999887654     2379999988765433321110  


Q ss_pred             ccccCccEEEEc
Q 012954          213 ILRSGVDAILMD  224 (452)
Q Consensus       213 l~~~~VDGILfD  224 (452)
                       ....+|.|++|
T Consensus       133 -~~~~fD~V~~d  143 (242)
T 3r3h_A          133 -GEHQFDFIFID  143 (242)
T ss_dssp             -CSSCEEEEEEE
T ss_pred             -CCCCEeEEEEc
Confidence             01369999987

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.56  E-value=0.00026  Score=66.07  Aligned_cols=81  Identities=9%  Similarity=0.044  Sum_probs=63.8

Q ss_pred             CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccc
Q 012954          134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENI  213 (452)
Q Consensus       134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l  213 (452)
                      +..++|.-.|.|.-+..+++.+++.++|+++|+++++++.|+++++..+..    ..++++++++..++   +....   
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~----~~~i~~~~gda~~~---l~~~~---  126 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS----PSRVRFLLSRPLDV---MSRLA---  126 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC----GGGEEEECSCHHHH---GGGSC---
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----cCcEEEEEcCHHHH---HHHhc---
Confidence            448999999999999999988887789999999999999999998876531    14799998886543   33321   


Q ss_pred             cccCccEEEEcc
Q 012954          214 LRSGVDAILMDL  225 (452)
Q Consensus       214 ~~~~VDGILfDL  225 (452)
                       ...+|.|++|-
T Consensus       127 -~~~fD~V~~d~  137 (221)
T 3dr5_A          127 -NDSYQLVFGQV  137 (221)
T ss_dssp             -TTCEEEEEECC
T ss_pred             -CCCcCeEEEcC
Confidence             24699999874

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.56  E-value=0.00022  Score=65.65  Aligned_cols=90  Identities=18%  Similarity=0.169  Sum_probs=67.7

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ...++..+....++..++|..+|.|+.+..+++..   ..|+|+|+++.+++.|+++++..+.     ..+++++++++.
T Consensus        66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~  137 (241)
T 3gdh_A           66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGI-----ADKIEFICGDFL  137 (241)
T ss_dssp             HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHH
T ss_pred             HHHHHHHhhhccCCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCC-----CcCeEEEECChH
Confidence            34444444322368899999999999999999762   5799999999999999998877642     137889999887


Q ss_pred             hHHHHHhhhcccccccCccEEEEccCCC
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      ++.   .       ...+|.|++|.-++
T Consensus       138 ~~~---~-------~~~~D~v~~~~~~~  155 (241)
T 3gdh_A          138 LLA---S-------FLKADVVFLSPPWG  155 (241)
T ss_dssp             HHG---G-------GCCCSEEEECCCCS
T ss_pred             Hhc---c-------cCCCCEEEECCCcC
Confidence            653   1       23799999985554

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=97.55  E-value=0.00028  Score=67.79  Aligned_cols=78  Identities=13%  Similarity=0.209  Sum_probs=62.7

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCC-CCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPE-LKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~-~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      +|+..++|.-+|.|..+..+++.++. ..+|+|+|..+.+|+.|+++++.++.     ..+++++++++.++.       
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~-----~~~v~~~~~D~~~~~-------  136 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRDIA-------  136 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCTTTCC-------
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc-----CceEEEeeccccccc-------
Confidence            58999999999999999999988643 34799999999999999999987654     247889998876531       


Q ss_pred             ccccccCccEEEEcc
Q 012954          211 ENILRSGVDAILMDL  225 (452)
Q Consensus       211 ~~l~~~~VDGILfDL  225 (452)
                          ...+|.|+..+
T Consensus       137 ----~~~~d~v~~~~  147 (261)
T 4gek_A          137 ----IENASMVVLNF  147 (261)
T ss_dssp             ----CCSEEEEEEES
T ss_pred             ----ccccccceeee
Confidence                23578887654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=97.55  E-value=0.00023  Score=63.43  Aligned_cols=95  Identities=12%  Similarity=0.122  Sum_probs=74.0

Q ss_pred             CCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954          114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       114 ~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      ...+|.+...+++.+. ..++ .++|.-.|.|..+..+++. +. ..++|+|.++.+++.|++++...+.     ..+++
T Consensus        26 ~~~~~~~~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~   96 (219)
T 3dlc_A           26 APIYPIIAENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SD-FSIRALDFSKHMNEIALKNIADANL-----NDRIQ   96 (219)
T ss_dssp             TTHHHHHHHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SE-EEEEEEESCHHHHHHHHHHHHHTTC-----TTTEE
T ss_pred             ccccHHHHHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHhccc-----cCceE
Confidence            3457788899999886 3344 9999999999999999988 43 4799999999999999999877643     23788


Q ss_pred             EEccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954          194 TFAKNFRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       194 li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      +++.++.++.  +       ....+|.|+....
T Consensus        97 ~~~~d~~~~~--~-------~~~~~D~v~~~~~  120 (219)
T 3dlc_A           97 IVQGDVHNIP--I-------EDNYADLIVSRGS  120 (219)
T ss_dssp             EEECBTTBCS--S-------CTTCEEEEEEESC
T ss_pred             EEEcCHHHCC--C-------CcccccEEEECch
Confidence            8898887642  1       1246999998743

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.55  E-value=0.00026  Score=65.20  Aligned_cols=84  Identities=12%  Similarity=0.142  Sum_probs=65.6

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++..++|...|.|+.+..+++.+|. ++|+|+|+++.+++.|+++++..+.     ..++.+++++.......+..   
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~---  123 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPE-ATIVSIERDERRYEEAHKHVKALGL-----ESRIELLFGDALQLGEKLEL---  123 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCGGGSHHHHTT---
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECCHHHHHHhccc---
Confidence            46789999999999999999998874 6799999999999999999887653     23688889887763222210   


Q ss_pred             cccccCccEEEEccCC
Q 012954          212 NILRSGVDAILMDLGM  227 (452)
Q Consensus       212 ~l~~~~VDGILfDLGv  227 (452)
                         ...+|.|++|.+.
T Consensus       124 ---~~~fD~I~~~~~~  136 (233)
T 2gpy_A          124 ---YPLFDVLFIDAAK  136 (233)
T ss_dssp             ---SCCEEEEEEEGGG
T ss_pred             ---CCCccEEEECCCH
Confidence               1369999998764

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.52  E-value=0.00029  Score=67.14  Aligned_cols=92  Identities=17%  Similarity=0.120  Sum_probs=63.2

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh-ccCCCCCCceEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL-LHGQAHPHLKTHT  194 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~-~~~~~~~~~r~~l  194 (452)
                      -+|-....+++.+. ..++..++|.-.|.|+.+..+++.+.+.++|+|+|+++.+++.|+++++.. +.      .++++
T Consensus        94 ~~~~~~~~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~------~~v~~  166 (275)
T 1yb2_A           94 ISEIDASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI------GNVRT  166 (275)
T ss_dssp             ------------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC------TTEEE
T ss_pred             cChhhHHHHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC------CcEEE
Confidence            44445566777776 468899999999999999999988444468999999999999999988765 42      26888


Q ss_pred             EccCcchHHHHHhhhcccccccCccEEEEc
Q 012954          195 FAKNFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       195 i~~nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      +++++.+   .+.       ...+|.|++|
T Consensus       167 ~~~d~~~---~~~-------~~~fD~Vi~~  186 (275)
T 1yb2_A          167 SRSDIAD---FIS-------DQMYDAVIAD  186 (275)
T ss_dssp             ECSCTTT---CCC-------SCCEEEEEEC
T ss_pred             EECchhc---cCc-------CCCccEEEEc
Confidence            8888764   111       2369999984

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.50  E-value=0.00031  Score=64.04  Aligned_cols=85  Identities=14%  Similarity=-0.023  Sum_probs=63.6

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++..++|.-.|.|..+..+++.+++.++|+++|+++.+++.|+++++..+.     ..++++++++..+...-+...+ 
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~~~~~~~~~~~-  141 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----EHKIDLRLKPALETLDELLAAG-  141 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHTT-
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CCeEEEEEcCHHHHHHHHHhcC-
Confidence            3568999999999999999998887667899999999999999998877643     2378888887754322222110 


Q ss_pred             cccccCccEEEEc
Q 012954          212 NILRSGVDAILMD  224 (452)
Q Consensus       212 ~l~~~~VDGILfD  224 (452)
                        ....+|.|++|
T Consensus       142 --~~~~~D~v~~d  152 (229)
T 2avd_A          142 --EAGTFDVAVVD  152 (229)
T ss_dssp             --CTTCEEEEEEC
T ss_pred             --CCCCccEEEEC
Confidence              01369999985

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.50  E-value=0.0011  Score=60.57  Aligned_cols=84  Identities=13%  Similarity=0.135  Sum_probs=56.0

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      |.|+++.+...+++..++|.-.|.|+-|..+++.   .++|+|+|+++.+         .        ..+++++++++.
T Consensus        13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~---------~--------~~~v~~~~~D~~   72 (191)
T 3dou_A           13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME---------E--------IAGVRFIRCDIF   72 (191)
T ss_dssp             HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC---------C--------CTTCEEEECCTT
T ss_pred             HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc---------c--------CCCeEEEEcccc
Confidence            5566766654468899999999999999999877   4689999999741         1        125778888876


Q ss_pred             hHH--HHHhh-hcccccccCccEEEEcc
Q 012954          201 HIK--SVLGQ-IDENILRSGVDAILMDL  225 (452)
Q Consensus       201 ~i~--~~L~~-~~~~l~~~~VDGILfDL  225 (452)
                      +..  ..+.+ .+. -....+|.|+.|.
T Consensus        73 ~~~~~~~~~~~~~~-~~~~~~D~Vlsd~   99 (191)
T 3dou_A           73 KETIFDDIDRALRE-EGIEKVDDVVSDA   99 (191)
T ss_dssp             SSSHHHHHHHHHHH-HTCSSEEEEEECC
T ss_pred             CHHHHHHHHHHhhc-ccCCcceEEecCC
Confidence            532  11111 100 0002689998864

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.48  E-value=0.00042  Score=70.44  Aligned_cols=94  Identities=15%  Similarity=0.169  Sum_probs=72.1

Q ss_pred             hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH
Q 012954          126 DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV  205 (452)
Q Consensus       126 ~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~  205 (452)
                      ..|. ++||..++|++.|-||-|.+|++..+. +.|+|+|+++.-++..+++++.++...-....++.+.+.+...+...
T Consensus       142 ~~L~-~~pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~  219 (359)
T 4fzv_A          142 LALG-LQPGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL  219 (359)
T ss_dssp             HHHC-CCTTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH
T ss_pred             HHhC-CCCCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh
Confidence            3455 579999999999999999999986544 67999999999999999988877542111224677777777766543


Q ss_pred             HhhhcccccccCccEEEEccCCCc
Q 012954          206 LGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       206 L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      ..        ..+|.||+|-=+|.
T Consensus       220 ~~--------~~fD~VLlDaPCSg  235 (359)
T 4fzv_A          220 EG--------DTYDRVLVDVPCTT  235 (359)
T ss_dssp             ST--------TCEEEEEEECCCCC
T ss_pred             cc--------ccCCEEEECCccCC
Confidence            22        36999999999985

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.47  E-value=0.00017  Score=69.24  Aligned_cols=85  Identities=12%  Similarity=0.094  Sum_probs=63.8

Q ss_pred             hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH
Q 012954          126 DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV  205 (452)
Q Consensus       126 ~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~  205 (452)
                      +.|. .+||..++|.-+|.|..+..+.+..++.|+|||+|.++++++.++++.+..        .++..+...-.....+
T Consensus        71 ~~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--------~ni~~V~~d~~~p~~~  141 (233)
T 4df3_A           71 IELP-VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--------RNIFPILGDARFPEKY  141 (233)
T ss_dssp             SCCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--------TTEEEEESCTTCGGGG
T ss_pred             hhcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--------cCeeEEEEeccCcccc
Confidence            4454 579999999999999888888888888899999999999999998765542        2567777666554332


Q ss_pred             HhhhcccccccCccEEEEcc
Q 012954          206 LGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       206 L~~~~~~l~~~~VDGILfDL  225 (452)
                      -.      ....+|.|+.|+
T Consensus       142 ~~------~~~~vDvVf~d~  155 (233)
T 4df3_A          142 RH------LVEGVDGLYADV  155 (233)
T ss_dssp             TT------TCCCEEEEEECC
T ss_pred             cc------ccceEEEEEEec
Confidence            11      124689888765

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.46  E-value=0.00016  Score=65.90  Aligned_cols=94  Identities=11%  Similarity=0.120  Sum_probs=67.2

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +.+.+++.|....++..++|...|.|+.+..+++...  ..|+|+|+++.+++.|+++++..+..    ..+++++++++
T Consensus        40 ~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~----~~~v~~~~~d~  113 (201)
T 2ift_A           40 VKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCS----SEQAEVINQSS  113 (201)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCC----TTTEEEECSCH
T ss_pred             HHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCC----ccceEEEECCH
Confidence            4556666664211678999999999999998887632  47999999999999999988765420    02688888887


Q ss_pred             chHHHHHhhhcccccccC-ccEEEEccC
Q 012954          200 RHIKSVLGQIDENILRSG-VDAILMDLG  226 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~-VDGILfDLG  226 (452)
                      .++   +...    .... +|.|++|.-
T Consensus       114 ~~~---~~~~----~~~~~fD~I~~~~~  134 (201)
T 2ift_A          114 LDF---LKQP----QNQPHFDVVFLDPP  134 (201)
T ss_dssp             HHH---TTSC----CSSCCEEEEEECCC
T ss_pred             HHH---HHhh----ccCCCCCEEEECCC
Confidence            543   2211    1246 999998644

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.44  E-value=0.00061  Score=62.14  Aligned_cols=106  Identities=12%  Similarity=0.022  Sum_probs=74.0

Q ss_pred             ccccchHHHHhhcc-CCCCCCEEEEEccCCChhHHHHHHhCC----CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCc
Q 012954          116 HIPVMLGEVLDVFS-SSRTITSFVDCTLGAAGHSSAIIRAHP----ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHL  190 (452)
Q Consensus       116 H~PVLl~Evl~~L~-~~~~ggiyVDaTlG~GGHS~aIL~~~p----~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~  190 (452)
                      -.|-+...+++.|. ...++..++|.-.|.|..+..+++..+    +.+.|+|+|+++.+++.|+++++..+... ....
T Consensus        62 ~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~  140 (227)
T 2pbf_A           62 SAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPEL-LKID  140 (227)
T ss_dssp             CCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGG-GSST
T ss_pred             CChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccc-cccC
Confidence            34567777888873 135788999999999999998888775    44689999999999999999887754100 0012


Q ss_pred             eEEEEccCcchHH-HHHhhhcccccccCccEEEEccCCC
Q 012954          191 KTHTFAKNFRHIK-SVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       191 r~~li~~nF~~i~-~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      ++++++.+..... .....      ...+|.|+.+.++.
T Consensus       141 ~v~~~~~d~~~~~~~~~~~------~~~fD~I~~~~~~~  173 (227)
T 2pbf_A          141 NFKIIHKNIYQVNEEEKKE------LGLFDAIHVGASAS  173 (227)
T ss_dssp             TEEEEECCGGGCCHHHHHH------HCCEEEEEECSBBS
T ss_pred             CEEEEECChHhcccccCcc------CCCcCEEEECCchH
Confidence            6888888776521 00011      13699998886653

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.43  E-value=0.0004  Score=64.57  Aligned_cols=84  Identities=18%  Similarity=0.013  Sum_probs=63.2

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|...|.|..+..+++.+++.++|+++|+++.+++.|+++++..+.     ..++.++.++..+...-+...+  
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~~~l~~l~~~~--  144 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV-----AEKISLRLGPALATLEQLTQGK--  144 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHHHHHHTSS--
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhcC--
Confidence            567999999999999999998887667899999999999999998877643     2368888888654322221100  


Q ss_pred             ccccCccEEEEc
Q 012954          213 ILRSGVDAILMD  224 (452)
Q Consensus       213 l~~~~VDGILfD  224 (452)
                       ....+|.|++|
T Consensus       145 -~~~~fD~V~~d  155 (232)
T 3cbg_A          145 -PLPEFDLIFID  155 (232)
T ss_dssp             -SCCCEEEEEEC
T ss_pred             -CCCCcCEEEEC
Confidence             00369999987

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.42  E-value=0.00057  Score=61.65  Aligned_cols=97  Identities=13%  Similarity=0.060  Sum_probs=74.0

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      ..|-++..+++.+. ..++..++|.-.|.|..+..+++..++..+|+|+|+++.+++.|++++...+.      .++.++
T Consensus        61 ~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~  133 (215)
T 2yxe_A           61 SAIHMVGMMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY------DNVIVI  133 (215)
T ss_dssp             CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC------TTEEEE
T ss_pred             CcHHHHHHHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEE
Confidence            34667788888886 56888999999999999999998874446799999999999999998877643      257777


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      +.+...   .+..      ...+|.|+.+.++.
T Consensus       134 ~~d~~~---~~~~------~~~fD~v~~~~~~~  157 (215)
T 2yxe_A          134 VGDGTL---GYEP------LAPYDRIYTTAAGP  157 (215)
T ss_dssp             ESCGGG---CCGG------GCCEEEEEESSBBS
T ss_pred             ECCccc---CCCC------CCCeeEEEECCchH
Confidence            777632   1111      23699999887653

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.38  E-value=0.0005  Score=62.68  Aligned_cols=81  Identities=16%  Similarity=0.048  Sum_probs=61.7

Q ss_pred             CCCCEEEEEccC-CChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          132 RTITSFVDCTLG-AAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       132 ~~ggiyVDaTlG-~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      .+++.++|...| .|..+..+++..  ...|+|+|+|+.+++.|+++++..+.       ++++++++...+..+     
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-------~v~~~~~d~~~~~~~-----  119 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS-------NVRLVKSNGGIIKGV-----  119 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC-------CCEEEECSSCSSTTT-----
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC-------CcEEEeCCchhhhhc-----
Confidence            578999999999 999999888875  35799999999999999998876532       677888885432211     


Q ss_pred             ccccccCccEEEEccCCCc
Q 012954          211 ENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       211 ~~l~~~~VDGILfDLGvSS  229 (452)
                         ....+|.|+.|.-|..
T Consensus       120 ---~~~~fD~I~~npp~~~  135 (230)
T 3evz_A          120 ---VEGTFDVIFSAPPYYD  135 (230)
T ss_dssp             ---CCSCEEEEEECCCCC-
T ss_pred             ---ccCceeEEEECCCCcC
Confidence               1246999999855533

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.37  E-value=0.00075  Score=64.58  Aligned_cols=95  Identities=13%  Similarity=0.094  Sum_probs=75.0

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +++.+++.+. ..++..++|.-.|.|+.+..+++.++  .+|+|+|+++.+++.|++++...+.     ..++++++.++
T Consensus        60 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~  131 (302)
T 3hem_A           60 KRKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDS-----PRRKEVRIQGW  131 (302)
T ss_dssp             HHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCC-----SSCEEEEECCG
T ss_pred             HHHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECCH
Confidence            5667888886 46888999999999999999998876  4699999999999999999877543     23788899988


Q ss_pred             chHHHHHhhhcccccccCccEEEEccCCCccCCCCCC
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPE  236 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~  236 (452)
                      .++       +     ..+|.|+....  .+++.+++
T Consensus       132 ~~~-------~-----~~fD~v~~~~~--~~~~~d~~  154 (302)
T 3hem_A          132 EEF-------D-----EPVDRIVSLGA--FEHFADGA  154 (302)
T ss_dssp             GGC-------C-----CCCSEEEEESC--GGGTTCCS
T ss_pred             HHc-------C-----CCccEEEEcch--HHhcCccc
Confidence            754       1     36999998743  34555553

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.37  E-value=0.00052  Score=65.00  Aligned_cols=85  Identities=11%  Similarity=-0.023  Sum_probs=64.6

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|.-.|.|+.+..+++.+++.++|+++|+++.+++.|+++++..+.     ..++++++++..+....+...+  
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~~l~~l~~~~--  151 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDFREGPALPVLDEMIKDE--  151 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHSG--
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCHHHHHHHHHhcc--
Confidence            567999999999999999999988667899999999999999998877543     2478888888765422221110  


Q ss_pred             ccccCccEEEEc
Q 012954          213 ILRSGVDAILMD  224 (452)
Q Consensus       213 l~~~~VDGILfD  224 (452)
                      .....+|.|++|
T Consensus       152 ~~~~~fD~V~~d  163 (247)
T 1sui_A          152 KNHGSYDFIFVD  163 (247)
T ss_dssp             GGTTCBSEEEEC
T ss_pred             CCCCCEEEEEEc
Confidence            001369999987

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=97.37  E-value=0.00027  Score=69.13  Aligned_cols=95  Identities=9%  Similarity=0.094  Sum_probs=70.2

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      .++.+-|-+++.+++.+. ..++..++|.-.|.|..|..+++.   .+.|+|+|+|+.+++.++++++..+.      .+
T Consensus        22 q~fl~~~~i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~------~~   91 (299)
T 2h1r_A           22 QHLLKNPGILDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGY------NN   91 (299)
T ss_dssp             -CEECCHHHHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTC------CC
T ss_pred             cceecCHHHHHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC------Cc
Confidence            344455668999999986 468889999999999999999876   24799999999999999998765432      26


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ++++++++..++           ...+|.|+.|+-|
T Consensus        92 v~~~~~D~~~~~-----------~~~~D~Vv~n~py  116 (299)
T 2h1r_A           92 LEVYEGDAIKTV-----------FPKFDVCTANIPY  116 (299)
T ss_dssp             EEC----CCSSC-----------CCCCSEEEEECCG
T ss_pred             eEEEECchhhCC-----------cccCCEEEEcCCc
Confidence            778887765431           1268999999764

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.36  E-value=0.00064  Score=64.60  Aligned_cols=88  Identities=9%  Similarity=0.021  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh---hccCCCCCCceEEEEccCcchHH-HHH
Q 012954          131 SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS---LLHGQAHPHLKTHTFAKNFRHIK-SVL  206 (452)
Q Consensus       131 ~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~---~~~~~~~~~~r~~li~~nF~~i~-~~L  206 (452)
                      ..++..++|...|.|..+..+++..+. ..|+|+|+|+.+++.|+++++.   .+.     ..+++++++++.++. ..+
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~l-----~~~v~~~~~D~~~~~~~~~  107 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEK-AEVTLYERSQEMAEFARRSLELPDNAAF-----SARIEVLEADVTLRAKARV  107 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTT-EEEEEEESSHHHHHHHHHHTTSGGGTTT-----GGGEEEEECCTTCCHHHHH
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHhhhhCCC-----cceEEEEeCCHHHHhhhhh
Confidence            346789999999999999999998875 5799999999999999998765   332     237899999987752 221


Q ss_pred             hhhcccccccCccEEEEccCC
Q 012954          207 GQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       207 ~~~~~~l~~~~VDGILfDLGv  227 (452)
                      .+.   +....+|.|+.|.-|
T Consensus       108 ~~~---~~~~~fD~Vv~nPPy  125 (260)
T 2ozv_A          108 EAG---LPDEHFHHVIMNPPY  125 (260)
T ss_dssp             HTT---CCTTCEEEEEECCCC
T ss_pred             hhc---cCCCCcCEEEECCCC
Confidence            110   112469999998444

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=97.36  E-value=0.00089  Score=61.77  Aligned_cols=95  Identities=9%  Similarity=0.088  Sum_probs=74.4

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      ..+-++..+++.+....++..++|.-.|.|..+..+++..+.  .|+|+|+++.+++.|++++...+.     ..+++++
T Consensus        29 ~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~  101 (257)
T 3f4k_A           29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANC-----ADRVKGI  101 (257)
T ss_dssp             CCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEE
T ss_pred             CCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCC-----CCceEEE
Confidence            445677888888854557889999999999999999998763  799999999999999998877653     2368888


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      ++++..+.  +       ....+|.|+....
T Consensus       102 ~~d~~~~~--~-------~~~~fD~v~~~~~  123 (257)
T 3f4k_A          102 TGSMDNLP--F-------QNEELDLIWSEGA  123 (257)
T ss_dssp             ECCTTSCS--S-------CTTCEEEEEEESC
T ss_pred             ECChhhCC--C-------CCCCEEEEEecCh
Confidence            88886542  1       1246999988743

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=97.36  E-value=0.00031  Score=65.50  Aligned_cols=99  Identities=10%  Similarity=0.021  Sum_probs=68.6

Q ss_pred             chHHHHhhccCC-CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          120 MLGEVLDVFSSS-RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       120 Ll~Evl~~L~~~-~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      ++.++++.+... .++..++|.-.|.|+.+..+++..+. .+|+|+|+++.+++.|+++++..+.     ..++++++++
T Consensus        51 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d  124 (254)
T 2h00_A           51 WVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNG-WYFLATEVDDMCFNYAKKNVEQNNL-----SDLIKVVKVP  124 (254)
T ss_dssp             HHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECC
T ss_pred             HHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHcCC-----CccEEEEEcc
Confidence            555566555310 15679999999999999999988765 4799999999999999998876543     2368888887


Q ss_pred             cch-HHHHHhhhcccccccCccEEEEccCCC
Q 012954          199 FRH-IKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       199 F~~-i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      ..+ +.+.+...+    ...+|.|+.|.=|-
T Consensus       125 ~~~~~~~~~~~~~----~~~fD~i~~npp~~  151 (254)
T 2h00_A          125 QKTLLMDALKEES----EIIYDFCMCNPPFF  151 (254)
T ss_dssp             TTCSSTTTSTTCC----SCCBSEEEECCCCC
T ss_pred             hhhhhhhhhhccc----CCcccEEEECCCCc
Confidence            554 211111100    13689999886543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.35  E-value=0.00048  Score=63.22  Aligned_cols=96  Identities=14%  Similarity=0.108  Sum_probs=72.8

Q ss_pred             cccchHHHHhhcc-CCCCCCEEEEEccCCChhHHHHHHhCCC-----CCEEEEEeCCHHHHHHHHHHHhhhc-----cCC
Q 012954          117 IPVMLGEVLDVFS-SSRTITSFVDCTLGAAGHSSAIIRAHPE-----LKLHIGVDVDPSALAKARAHLNSLL-----HGQ  185 (452)
Q Consensus       117 ~PVLl~Evl~~L~-~~~~ggiyVDaTlG~GGHS~aIL~~~p~-----~g~VigfDrD~~Ai~~Ak~rL~~~~-----~~~  185 (452)
                      .|.+...+++.|. ...++..++|.-.|.|..+..+++..+.     .++|+|+|+++.+++.|++++...+     .  
T Consensus        67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~--  144 (227)
T 1r18_A           67 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS--  144 (227)
T ss_dssp             CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCC--
Confidence            6778888999884 2457889999999999999988886653     2479999999999999999887643     2  


Q ss_pred             CCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          186 AHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       186 ~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                          .++++++.+...   .+..      ...+|.|+.+.++
T Consensus       145 ----~~v~~~~~d~~~---~~~~------~~~fD~I~~~~~~  173 (227)
T 1r18_A          145 ----GQLLIVEGDGRK---GYPP------NAPYNAIHVGAAA  173 (227)
T ss_dssp             ----TSEEEEESCGGG---CCGG------GCSEEEEEECSCB
T ss_pred             ----CceEEEECCccc---CCCc------CCCccEEEECCch
Confidence                267788877654   1111      1369999887665

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=97.31  E-value=0.00065  Score=65.85  Aligned_cols=97  Identities=12%  Similarity=0.208  Sum_probs=76.5

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      .++-+-|-+++.+++.+. ..++..++|.-.|.|..|..+++..   .+|+|+|+|+.+++.+++++...+.     ..+
T Consensus         8 q~fl~d~~i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~   78 (285)
T 1zq9_A            8 QHILKNPLIINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPV-----ASK   78 (285)
T ss_dssp             CCEECCHHHHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTT-----GGG
T ss_pred             cCccCCHHHHHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCC-----CCc
Confidence            455567778999999997 4688899999999999999999873   4699999999999999998765422     137


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      ++++++++..++           ...+|.|+.|+-|+
T Consensus        79 v~~~~~D~~~~~-----------~~~fD~vv~nlpy~  104 (285)
T 1zq9_A           79 LQVLVGDVLKTD-----------LPFFDTCVANLPYQ  104 (285)
T ss_dssp             EEEEESCTTTSC-----------CCCCSEEEEECCGG
T ss_pred             eEEEEcceeccc-----------chhhcEEEEecCcc
Confidence            888888876531           12588999988664

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=97.30  E-value=0.00036  Score=67.27  Aligned_cols=61  Identities=15%  Similarity=0.137  Sum_probs=47.3

Q ss_pred             chHHHHhhccCC-CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          120 MLGEVLDVFSSS-RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       120 Ll~Evl~~L~~~-~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      +.+.+++.|... .++..++|.-+|.|..+..|++.++.. .|+|+|+|+.+++.|++++..+
T Consensus        32 ~~~~~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~-~v~gvDis~~~i~~A~~~~~~~   93 (292)
T 3g07_A           32 CEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS-RMVGLDIDSRLIHSARQNIRHY   93 (292)
T ss_dssp             --CGGGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCS-EEEEEESCHHHHHHHHHTC---
T ss_pred             chhHHHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCC-EEEEECCCHHHHHHHHHHHHhh
Confidence            666677777521 257899999999999999999988764 7999999999999999887654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.30  E-value=0.00075  Score=61.48  Aligned_cols=101  Identities=13%  Similarity=0.035  Sum_probs=72.0

Q ss_pred             cccchHHHHhhcc-CCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          117 IPVMLGEVLDVFS-SSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       117 ~PVLl~Evl~~L~-~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      .|-+...+++.|. ...++..++|.-.|.|+.+..+++..++.++|+|+|+++.+++.|++++...+... ....++.++
T Consensus        60 ~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~v~~~  138 (226)
T 1i1n_A           60 APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTL-LSSGRVQLV  138 (226)
T ss_dssp             CHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHH-HHTSSEEEE
T ss_pred             CHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc-cCCCcEEEE
Confidence            4556777788874 13578899999999999999999886555689999999999999999887642100 001267778


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +.+....   ...      ...+|.|+.+..+
T Consensus       139 ~~d~~~~---~~~------~~~fD~i~~~~~~  161 (226)
T 1i1n_A          139 VGDGRMG---YAE------EAPYDAIHVGAAA  161 (226)
T ss_dssp             ESCGGGC---CGG------GCCEEEEEECSBB
T ss_pred             ECCcccC---ccc------CCCcCEEEECCch
Confidence            8776532   111      2369999888665

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.28  E-value=0.00089  Score=61.86  Aligned_cols=94  Identities=13%  Similarity=0.146  Sum_probs=72.1

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      -.|-+...+++.+. ..++..++|.-.|.|..+..+++..+  .+|+|+|+++.+++.|+++++..+.      .++.++
T Consensus        75 ~~~~~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~  145 (235)
T 1jg1_A           75 SAPHMVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGV------KNVHVI  145 (235)
T ss_dssp             CCHHHHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTC------CSEEEE
T ss_pred             ccHHHHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCC------CCcEEE
Confidence            35678888999886 56888999999999999999988876  4699999999999999999877643      257777


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      .+++..   -+..      ...+|.|+.+.++
T Consensus       146 ~~d~~~---~~~~------~~~fD~Ii~~~~~  168 (235)
T 1jg1_A          146 LGDGSK---GFPP------KAPYDVIIVTAGA  168 (235)
T ss_dssp             ESCGGG---CCGG------GCCEEEEEECSBB
T ss_pred             ECCccc---CCCC------CCCccEEEECCcH
Confidence            777621   1111      1248999987554

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.27  E-value=0.00063  Score=62.82  Aligned_cols=86  Identities=10%  Similarity=0.077  Sum_probs=63.4

Q ss_pred             hHHH---HhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          121 LGEV---LDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       121 l~Ev---l~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      +..+   ++.+. ..++..++|.-.|.|..+..+++.++ .++|+|+|+++.+++.|+++.+..        .++.++++
T Consensus        60 ~~~i~~~l~~~~-~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--------~~v~~~~~  129 (230)
T 1fbn_A           60 AAAIIKGLKVMP-IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER--------ENIIPILG  129 (230)
T ss_dssp             HHHHHTTCCCCC-CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC--------TTEEEEEC
T ss_pred             HHHHHhcccccC-CCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC--------CCeEEEEC
Confidence            4666   45553 35788999999999999999998887 468999999999999998875442        26888888


Q ss_pred             CcchHHHHHhhhcccccccCccEEE
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAIL  222 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGIL  222 (452)
                      +..+...++.     + ...+|.|+
T Consensus       130 d~~~~~~~~~-----~-~~~~D~v~  148 (230)
T 1fbn_A          130 DANKPQEYAN-----I-VEKVDVIY  148 (230)
T ss_dssp             CTTCGGGGTT-----T-SCCEEEEE
T ss_pred             CCCCcccccc-----c-CccEEEEE
Confidence            7765222111     1 13689888

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.27  E-value=0.0011  Score=65.84  Aligned_cols=91  Identities=11%  Similarity=0.008  Sum_probs=72.4

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      ++|+.-.|. ..+. .+++..++|.=.|.||-|..+|.+.+. ++|+|+|+|+++++.|+++++..+.      .+++++
T Consensus       107 ~~~l~~~E~-~la~-l~~g~rVLDIGcG~G~~ta~~lA~~~g-a~V~gIDis~~~l~~Ar~~~~~~gl------~~v~~v  177 (298)
T 3fpf_A          107 YLELLKNEA-ALGR-FRRGERAVFIGGGPLPLTGILLSHVYG-MRVNVVEIEPDIAELSRKVIEGLGV------DGVNVI  177 (298)
T ss_dssp             HHHHHHHHH-HHTT-CCTTCEEEEECCCSSCHHHHHHHHTTC-CEEEEEESSHHHHHHHHHHHHHHTC------CSEEEE
T ss_pred             HHHHHHHHH-HHcC-CCCcCEEEEECCCccHHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHhcCC------CCeEEE
Confidence            556666675 4554 578999999999999999988888765 5799999999999999999887653      378999


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      +++..++.      +     ..+|.|+.+.+
T Consensus       178 ~gDa~~l~------d-----~~FDvV~~~a~  197 (298)
T 3fpf_A          178 TGDETVID------G-----LEFDVLMVAAL  197 (298)
T ss_dssp             ESCGGGGG------G-----CCCSEEEECTT
T ss_pred             ECchhhCC------C-----CCcCEEEECCC
Confidence            99887642      1     36999997654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.26  E-value=0.00037  Score=63.45  Aligned_cols=90  Identities=11%  Similarity=0.122  Sum_probs=65.3

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +...+++.+....++..++|...|.|..+..+++...  ..|+|+|+++.+++.|+++++..+.      .++++++++.
T Consensus        41 ~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~D~  112 (202)
T 2fpo_A           41 VRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKA------GNARVVNSNA  112 (202)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCH
T ss_pred             HHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCH
Confidence            4455556654211678999999999999998887642  3799999999999999998876542      2688888876


Q ss_pred             chHHHHHhhhcccccccCccEEEEcc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      .+.   +...     ...+|.|++|.
T Consensus       113 ~~~---~~~~-----~~~fD~V~~~~  130 (202)
T 2fpo_A          113 MSF---LAQK-----GTPHNIVFVDP  130 (202)
T ss_dssp             HHH---HSSC-----CCCEEEEEECC
T ss_pred             HHH---Hhhc-----CCCCCEEEECC
Confidence            542   2221     23699999763

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.26  E-value=0.0011  Score=63.74  Aligned_cols=93  Identities=13%  Similarity=0.082  Sum_probs=70.1

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      -.|.+..|.+..+....++..++|+-.|.|+.+..+++..+. ++|+|+|.++.|++.|+++++..+.      .++.++
T Consensus       102 ~~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~-~~V~~vD~s~~av~~a~~n~~~n~l------~~~~~~  174 (272)
T 3a27_A          102 WSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKP-KLVYAIEKNPTAYHYLCENIKLNKL------NNVIPI  174 (272)
T ss_dssp             CCGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTCC-SEEEEEECCHHHHHHHHHHHHHTTC------SSEEEE
T ss_pred             ECCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEE
Confidence            345555566555543457889999999999999999988764 5799999999999999998876543      257788


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +++..++ ..    +     ..+|.|++|.
T Consensus       175 ~~d~~~~-~~----~-----~~~D~Vi~d~  194 (272)
T 3a27_A          175 LADNRDV-EL----K-----DVADRVIMGY  194 (272)
T ss_dssp             ESCGGGC-CC----T-----TCEEEEEECC
T ss_pred             ECChHHc-Cc----c-----CCceEEEECC
Confidence            8887654 11    1     3699999883

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.26  E-value=0.0075  Score=53.18  Aligned_cols=83  Identities=16%  Similarity=0.185  Sum_probs=54.8

Q ss_pred             HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCC--------CEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE
Q 012954          123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPEL--------KLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT  194 (452)
Q Consensus       123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~--------g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l  194 (452)
                      |+.+.+....++..++|.-.|.|+.+..+++.++..        ++|+|+|+++.+         .        ..++++
T Consensus        12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~--------~~~~~~   74 (196)
T 2nyu_A           12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------P--------LEGATF   74 (196)
T ss_dssp             HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------C--------CTTCEE
T ss_pred             HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------c--------CCCCeE
Confidence            444444333578899999999999999999988753        689999999732         0        014667


Q ss_pred             E-ccCcchHHHH--HhhhcccccccCccEEEEcc
Q 012954          195 F-AKNFRHIKSV--LGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       195 i-~~nF~~i~~~--L~~~~~~l~~~~VDGILfDL  225 (452)
                      + +.++.+....  +.+.   +....+|.|+.|.
T Consensus        75 ~~~~d~~~~~~~~~~~~~---~~~~~fD~V~~~~  105 (196)
T 2nyu_A           75 LCPADVTDPRTSQRILEV---LPGRRADVILSDM  105 (196)
T ss_dssp             ECSCCTTSHHHHHHHHHH---SGGGCEEEEEECC
T ss_pred             EEeccCCCHHHHHHHHHh---cCCCCCcEEEeCC
Confidence            7 7777664321  1111   0123699999864

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=97.26  E-value=0.0016  Score=58.28  Aligned_cols=74  Identities=22%  Similarity=0.176  Sum_probs=59.1

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++..++|...|.|+.+..+++. +. +.|+|+|+++.+++.|+++++..+.       +++++++++.++.        
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~~~--------  110 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLL-GA-KEVICVEVDKEAVDVLIENLGEFKG-------KFKVFIGDVSEFN--------  110 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHTGGGTT-------SEEEEESCGGGCC--------
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHHHHHcCC-------CEEEEECchHHcC--------
Confidence            46789999999999999998876 32 4699999999999999998765431       6888888876531        


Q ss_pred             cccccCccEEEEccC
Q 012954          212 NILRSGVDAILMDLG  226 (452)
Q Consensus       212 ~l~~~~VDGILfDLG  226 (452)
                          ..+|.|++|.=
T Consensus       111 ----~~~D~v~~~~p  121 (207)
T 1wy7_A          111 ----SRVDIVIMNPP  121 (207)
T ss_dssp             ----CCCSEEEECCC
T ss_pred             ----CCCCEEEEcCC
Confidence                26999998754

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.24  E-value=0.0014  Score=60.96  Aligned_cols=79  Identities=9%  Similarity=0.169  Sum_probs=63.2

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH-HHHHhhhcc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI-KSVLGQIDE  211 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i-~~~L~~~~~  211 (452)
                      ++..++|.-+|.|.++..+.+..|+. .|+|+|+++.+++.|+++++..+.      .++.+++++..++ ...+.    
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~-~v~giD~s~~~l~~a~~~~~~~~l------~nv~~~~~Da~~~l~~~~~----  102 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQ-DFLGIEVHSPGVGACLASAHEEGL------SNLRVMCHDAVEVLHKMIP----  102 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHTTC------SSEEEECSCHHHHHHHHSC----
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCC-eEEEEEecHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHcC----
Confidence            67899999999999999999988874 699999999999999998876543      3688999987764 22232    


Q ss_pred             cccccCccEEEEcc
Q 012954          212 NILRSGVDAILMDL  225 (452)
Q Consensus       212 ~l~~~~VDGILfDL  225 (452)
                         ...+|.|++++
T Consensus       103 ---~~~~d~v~~~~  113 (218)
T 3dxy_A          103 ---DNSLRMVQLFF  113 (218)
T ss_dssp             ---TTCEEEEEEES
T ss_pred             ---CCChheEEEeC
Confidence               24699998764

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.24  E-value=0.00084  Score=65.53  Aligned_cols=97  Identities=12%  Similarity=0.089  Sum_probs=75.6

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      ..|-++..+++.+. ..++..++|.-.|.|+.+..+++..+..++|+|+|.++++++.|+++++..+.      .++.++
T Consensus        59 ~~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~------~~v~~~  131 (317)
T 1dl5_A           59 SQPSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFV  131 (317)
T ss_dssp             CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEE
T ss_pred             cCHHHHHHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCeEEE
Confidence            35678888999886 56889999999999999988888766446799999999999999999876543      257888


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      +.++.+.   +..      ...+|.|+.+.++.
T Consensus       132 ~~d~~~~---~~~------~~~fD~Iv~~~~~~  155 (317)
T 1dl5_A          132 CGDGYYG---VPE------FSPYDVIFVTVGVD  155 (317)
T ss_dssp             ESCGGGC---CGG------GCCEEEEEECSBBS
T ss_pred             ECChhhc---ccc------CCCeEEEEEcCCHH
Confidence            8877642   111      13689999887654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.23  E-value=0.0019  Score=61.35  Aligned_cols=90  Identities=17%  Similarity=0.214  Sum_probs=71.1

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .|+..+++.+.  .++..++|...|.|..+..+++..+. ..|+|+|+++.+++.|+++.+.++.      .++++++++
T Consensus        97 ~l~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~n~~~~~~------~~v~~~~~d  167 (276)
T 2b3t_A           97 CLVEQALARLP--EQPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAI------KNIHILQSD  167 (276)
T ss_dssp             HHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCS
T ss_pred             HHHHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC------CceEEEEcc
Confidence            47778888874  46789999999999999999988876 4799999999999999998877643      268888888


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCC
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +...   +.       ...+|.|+.|.-|
T Consensus       168 ~~~~---~~-------~~~fD~Iv~npPy  186 (276)
T 2b3t_A          168 WFSA---LA-------GQQFAMIVSNPPY  186 (276)
T ss_dssp             TTGG---GT-------TCCEEEEEECCCC
T ss_pred             hhhh---cc-------cCCccEEEECCCC
Confidence            7542   11       1369999987554

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.19  E-value=0.00077  Score=66.55  Aligned_cols=96  Identities=9%  Similarity=0.041  Sum_probs=77.4

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      .++-+-|-+++.+++.+. ..++..++|.-.|.|.-|..+++.   .++|+|+|+|+.+++.++++++.+        .+
T Consensus        30 QnfL~d~~i~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~~--------~~   97 (295)
T 3gru_A           30 QCFLIDKNFVNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKELY--------NN   97 (295)
T ss_dssp             CCEECCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHHC--------SS
T ss_pred             ccccCCHHHHHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhccC--------CC
Confidence            456677888999999997 568899999999999999999987   257999999999999999988632        26


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      ++++++++..++  +.       ...+|.|+.|+-|.
T Consensus        98 v~vi~gD~l~~~--~~-------~~~fD~Iv~NlPy~  125 (295)
T 3gru_A           98 IEIIWGDALKVD--LN-------KLDFNKVVANLPYQ  125 (295)
T ss_dssp             EEEEESCTTTSC--GG-------GSCCSEEEEECCGG
T ss_pred             eEEEECchhhCC--cc-------cCCccEEEEeCccc
Confidence            889999887542  11       12589999998763

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.18  E-value=0.00075  Score=69.23  Aligned_cols=92  Identities=14%  Similarity=0.208  Sum_probs=69.3

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      ..|++.+++.+. ..++..++|+..|.|..+..+.+.   ...|+|+|++++|++.|+++++..+.      .+++++++
T Consensus       272 e~l~~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~------~~v~f~~~  341 (433)
T 1uwv_A          272 QKMVARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGL------QNVTFYHE  341 (433)
T ss_dssp             HHHHHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEEC
T ss_pred             HHHHHHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEC
Confidence            458888999886 457789999999999999998876   35799999999999999998876542      26888888


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEc
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      +..+.   +....  +....+|.|++|
T Consensus       342 d~~~~---l~~~~--~~~~~fD~Vv~d  363 (433)
T 1uwv_A          342 NLEED---VTKQP--WAKNGFDKVLLD  363 (433)
T ss_dssp             CTTSC---CSSSG--GGTTCCSEEEEC
T ss_pred             CHHHH---hhhhh--hhcCCCCEEEEC
Confidence            87652   11100  012369999974

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.18  E-value=0.0021  Score=58.62  Aligned_cols=91  Identities=9%  Similarity=-0.033  Sum_probs=71.0

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      ..|-++..+++.+. ..++..++|.-.|.|..+..+++..   ..|+|+|+++.+++.|++++...+        ++.++
T Consensus        54 ~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~--------~v~~~  121 (231)
T 1vbf_A           54 TALNLGIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN--------NIKLI  121 (231)
T ss_dssp             CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS--------SEEEE
T ss_pred             CCHHHHHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC--------CeEEE
Confidence            46677888898886 4688899999999999999888875   579999999999999999876531        57778


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +++....   +..      ...+|.|+.+..+
T Consensus       122 ~~d~~~~---~~~------~~~fD~v~~~~~~  144 (231)
T 1vbf_A          122 LGDGTLG---YEE------EKPYDRVVVWATA  144 (231)
T ss_dssp             ESCGGGC---CGG------GCCEEEEEESSBB
T ss_pred             ECCcccc---ccc------CCCccEEEECCcH
Confidence            8877541   111      2369999988654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.17  E-value=0.0013  Score=61.94  Aligned_cols=85  Identities=12%  Similarity=0.185  Sum_probs=61.6

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch-HHHHHhhhc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH-IKSVLGQID  210 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~-i~~~L~~~~  210 (452)
                      .++..++|.-+|.|.++..+.+..|.. .|+|+|+++.+++.|+++++...........++.+++++... +..++..  
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~-~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~--  121 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDT-LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYK--  121 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTS-EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCT--
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCC-eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCC--
Confidence            356789999999999999999888764 699999999999999887654210000012368899998775 6555432  


Q ss_pred             ccccccCccEEEEc
Q 012954          211 ENILRSGVDAILMD  224 (452)
Q Consensus       211 ~~l~~~~VDGILfD  224 (452)
                           ..+|.|++.
T Consensus       122 -----~~~D~v~~~  130 (235)
T 3ckk_A          122 -----GQLTKMFFL  130 (235)
T ss_dssp             -----TCEEEEEEE
T ss_pred             -----cCeeEEEEe
Confidence                 368988764

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.14  E-value=0.001  Score=62.14  Aligned_cols=85  Identities=13%  Similarity=0.215  Sum_probs=60.3

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCC--CCceEEEEccCcch-HHHHHhhh
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAH--PHLKTHTFAKNFRH-IKSVLGQI  209 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~--~~~r~~li~~nF~~-i~~~L~~~  209 (452)
                      ++..++|+-+|.|+.+..+++..+. ..|+|+|+++.+++.|+++++........  +..++.+++++..+ +...+.  
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~--  125 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE--  125 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC--
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc--
Confidence            5779999999999999999998875 46999999999999999887654100000  01368888887654 332221  


Q ss_pred             cccccccCccEEEEcc
Q 012954          210 DENILRSGVDAILMDL  225 (452)
Q Consensus       210 ~~~l~~~~VDGILfDL  225 (452)
                           ...+|.|++++
T Consensus       126 -----~~~~d~v~~~~  136 (246)
T 2vdv_E          126 -----KGQLSKMFFCF  136 (246)
T ss_dssp             -----TTCEEEEEEES
T ss_pred             -----ccccCEEEEEC
Confidence                 23688888654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=97.14  E-value=0.0015  Score=63.41  Aligned_cols=91  Identities=13%  Similarity=0.143  Sum_probs=70.5

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .|++.+++.+. ..++..++|...|.|..+..++.. +. ..|+|+|+++.|++.|+++++.++.     ..++++++++
T Consensus       110 ~lv~~~l~~~~-~~~~~~vLDlG~GsG~~~~~la~~-~~-~~v~~vDis~~al~~A~~n~~~~~l-----~~~v~~~~~D  181 (284)
T 1nv8_A          110 ELVELALELIR-KYGIKTVADIGTGSGAIGVSVAKF-SD-AIVFATDVSSKAVEIARKNAERHGV-----SDRFFVRKGE  181 (284)
T ss_dssp             HHHHHHHHHHH-HHTCCEEEEESCTTSHHHHHHHHH-SS-CEEEEEESCHHHHHHHHHHHHHTTC-----TTSEEEEESS
T ss_pred             HHHHHHHHHhc-ccCCCEEEEEeCchhHHHHHHHHC-CC-CEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECc
Confidence            47777888775 236679999999999999999988 55 5799999999999999998877643     2368899988


Q ss_pred             cchHHHHHhhhcccccccCc---cEEEEccCCC
Q 012954          199 FRHIKSVLGQIDENILRSGV---DAILMDLGMS  228 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~V---DGILfDLGvS  228 (452)
                      +...   +.        ..+   |.|+.|-=|.
T Consensus       182 ~~~~---~~--------~~f~~~D~IvsnPPyi  203 (284)
T 1nv8_A          182 FLEP---FK--------EKFASIEMILSNPPYV  203 (284)
T ss_dssp             TTGG---GG--------GGTTTCCEEEECCCCB
T ss_pred             chhh---cc--------cccCCCCEEEEcCCCC
Confidence            7642   11        146   9999885443

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.14  E-value=0.0013  Score=68.02  Aligned_cols=80  Identities=19%  Similarity=0.145  Sum_probs=61.9

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh--ccCCCCCCceEEEEccCcch-HHHHHhhh
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL--LHGQAHPHLKTHTFAKNFRH-IKSVLGQI  209 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~--~~~~~~~~~r~~li~~nF~~-i~~~L~~~  209 (452)
                      ++..++|++.|.|+.+.++...   ..+|+|+|+|+.+++.|+++++.+  +.      .++++++++... +.. +.  
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl------~~i~~i~~Da~~~L~~-~~--  160 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG------KDVNILTGDFKEYLPL-IK--  160 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT------CEEEEEESCGGGSHHH-HH--
T ss_pred             CCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC------CcEEEEECcHHHhhhh-cc--
Confidence            4789999999999998877654   247999999999999999998876  32      378999998765 332 11  


Q ss_pred             cccccccCccEEEEccCCCc
Q 012954          210 DENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       210 ~~~l~~~~VDGILfDLGvSS  229 (452)
                           ...+|.|++|=-+..
T Consensus       161 -----~~~fDvV~lDPPrr~  175 (410)
T 3ll7_A          161 -----TFHPDYIYVDPARRS  175 (410)
T ss_dssp             -----HHCCSEEEECCEEC-
T ss_pred             -----CCCceEEEECCCCcC
Confidence                 136999999877654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.13  E-value=0.0035  Score=65.50  Aligned_cols=84  Identities=15%  Similarity=0.073  Sum_probs=67.9

Q ss_pred             CCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh-------hccCCC
Q 012954          114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS-------LLHGQA  186 (452)
Q Consensus       114 ~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~-------~~~~~~  186 (452)
                      ....|-++.++++.+. ..++..++|.-.|.|.-+..+....+. .+++|+|+++.+++.|+++++.       ++..  
T Consensus       155 GEt~~~~i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~-~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~--  230 (438)
T 3uwp_A          155 GETSFDLVAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNC-KHHYGVEKADIPAKYAETMDREFRKWMKWYGKK--  230 (438)
T ss_dssp             GGTHHHHHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC--
T ss_pred             CCCCHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC--
Confidence            4466888999999997 579999999999999999988877764 4699999999999999875532       2211  


Q ss_pred             CCCceEEEEccCcchHH
Q 012954          187 HPHLKTHTFAKNFRHIK  203 (452)
Q Consensus       187 ~~~~r~~li~~nF~~i~  203 (452)
                        ..++++++++|.+++
T Consensus       231 --~~rVefi~GD~~~lp  245 (438)
T 3uwp_A          231 --HAEYTLERGDFLSEE  245 (438)
T ss_dssp             --CCEEEEEECCTTSHH
T ss_pred             --CCCeEEEECcccCCc
Confidence              148999999998875

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.12  E-value=0.0016  Score=63.94  Aligned_cols=99  Identities=16%  Similarity=0.130  Sum_probs=73.1

Q ss_pred             CccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE
Q 012954          115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT  194 (452)
Q Consensus       115 ~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l  194 (452)
                      +-.|-+..|-.......++|.+++|+-.|.|+-|..++.. +. .+|+|+|++|.|++.++++++..+.     .+++++
T Consensus       107 ~f~~~~~~er~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~-g~-~~V~avD~np~a~~~~~~N~~~N~v-----~~~v~~  179 (278)
T 3k6r_A          107 MFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVY-GK-AKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSA  179 (278)
T ss_dssp             CCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTTHHHHHH-TC-CEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEE
T ss_pred             EEcCCcHHHHHHHHHhcCCCCEEEEecCcCcHHHHHHHHh-cC-CeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEE
Confidence            4556666664444332358999999999999999998876 33 4799999999999999998876653     347888


Q ss_pred             EccCcchHHHHHhhhcccccccCccEEEEccCCCcc
Q 012954          195 FAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSM  230 (452)
Q Consensus       195 i~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~  230 (452)
                      ++++...+   ..       ...+|-|++|+=.++.
T Consensus       180 ~~~D~~~~---~~-------~~~~D~Vi~~~p~~~~  205 (278)
T 3k6r_A          180 YNMDNRDF---PG-------ENIADRILMGYVVRTH  205 (278)
T ss_dssp             ECSCTTTC---CC-------CSCEEEEEECCCSSGG
T ss_pred             EeCcHHHh---cc-------ccCCCEEEECCCCcHH
Confidence            88876543   11       2468999998766553

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=97.10  E-value=0.0017  Score=60.73  Aligned_cols=95  Identities=9%  Similarity=0.085  Sum_probs=71.8

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      .+-++..+++.+....++..++|.-.|.|..+..+++. +. ..|+|+|.++.+++.|+++++..+.     ..++.+++
T Consensus        30 ~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~-~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~  102 (267)
T 3kkz_A           30 SPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VT-GQVTGLDFLSGFIDIFNRNARQSGL-----QNRVTGIV  102 (267)
T ss_dssp             CHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CS-SEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEE
T ss_pred             CHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cC-CEEEEEeCCHHHHHHHHHHHHHcCC-----CcCcEEEE
Confidence            34456777888763457899999999999999998877 44 4799999999999999998877643     23688888


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +++.++.  +       ....+|.|+....+
T Consensus       103 ~d~~~~~--~-------~~~~fD~i~~~~~~  124 (267)
T 3kkz_A          103 GSMDDLP--F-------RNEELDLIWSEGAI  124 (267)
T ss_dssp             CCTTSCC--C-------CTTCEEEEEESSCG
T ss_pred             cChhhCC--C-------CCCCEEEEEEcCCc
Confidence            8886642  1       12468988876443

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.07  E-value=0.0011  Score=62.05  Aligned_cols=88  Identities=15%  Similarity=0.101  Sum_probs=63.4

Q ss_pred             HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHH
Q 012954          124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIK  203 (452)
Q Consensus       124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~  203 (452)
                      ..+.+.  .+|+.++|.=+|.|..+..|++..+.  .++|+|+++.+++.|+++.+..+       .++.++.++...+ 
T Consensus        53 ~a~~~~--~~G~rVLdiG~G~G~~~~~~~~~~~~--~v~~id~~~~~~~~a~~~~~~~~-------~~~~~~~~~a~~~-  120 (236)
T 3orh_A           53 LAAAAS--SKGGRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQT-------HKVIPLKGLWEDV-  120 (236)
T ss_dssp             HHHHHT--TTCEEEEEECCTTSHHHHHHTTSCEE--EEEEEECCHHHHHHHHHHGGGCS-------SEEEEEESCHHHH-
T ss_pred             HHHhhc--cCCCeEEEECCCccHHHHHHHHhCCc--EEEEEeCCHHHHHHHHHHHhhCC-------CceEEEeehHHhh-
Confidence            344443  48899999999999888888766553  58999999999999999876543       3677777766543 


Q ss_pred             HHHhhhcccccccCccEEEEccCCCc
Q 012954          204 SVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       204 ~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                        +...    ....+|+|+||-=+++
T Consensus       121 --~~~~----~~~~FD~i~~D~~~~~  140 (236)
T 3orh_A          121 --APTL----PDGHFDGILYDTYPLS  140 (236)
T ss_dssp             --GGGS----CTTCEEEEEECCCCCB
T ss_pred             --cccc----cccCCceEEEeeeecc
Confidence              2222    1346999999854443

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=97.06  E-value=0.0021  Score=61.23  Aligned_cols=92  Identities=15%  Similarity=0.109  Sum_probs=71.1

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      |-++..+++.+....++..++|.-.|.|..+..+++.+|+...|+|+|.++.+++.|++++...+       .++.++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-------~~v~~~~~   79 (284)
T 3gu3_A            7 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-------YDSEFLEG   79 (284)
T ss_dssp             HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS-------SEEEEEES
T ss_pred             hHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC-------CceEEEEc
Confidence            34556666666434578899999999999999999988865689999999999999999876542       27888888


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEccC
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      ++.++.    .      ...+|.|+....
T Consensus        80 d~~~~~----~------~~~fD~v~~~~~   98 (284)
T 3gu3_A           80 DATEIE----L------NDKYDIAICHAF   98 (284)
T ss_dssp             CTTTCC----C------SSCEEEEEEESC
T ss_pred             chhhcC----c------CCCeeEEEECCh
Confidence            877531    0      136899988764

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=97.04  E-value=0.0019  Score=59.44  Aligned_cols=90  Identities=14%  Similarity=0.098  Sum_probs=69.9

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      ..|-++..+++.+. ..++..++|.-.|.|..+..+++.++  ..++|+|.++.+++.|+++++..+.     ..++.++
T Consensus        20 ~~~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~v~~~   91 (256)
T 1nkv_A           20 FTEEKYATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGV-----SERVHFI   91 (256)
T ss_dssp             CCHHHHHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEE
T ss_pred             CCHHHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEE
Confidence            45557888888886 46889999999999998998888873  3689999999999999998876543     1368888


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEE
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILM  223 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILf  223 (452)
                      ++++.++..          ...+|.|+.
T Consensus        92 ~~d~~~~~~----------~~~fD~V~~  109 (256)
T 1nkv_A           92 HNDAAGYVA----------NEKCDVAAC  109 (256)
T ss_dssp             ESCCTTCCC----------SSCEEEEEE
T ss_pred             ECChHhCCc----------CCCCCEEEE
Confidence            888765420          136888876

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.03  E-value=0.0021  Score=60.61  Aligned_cols=86  Identities=8%  Similarity=0.064  Sum_probs=68.0

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +++.+++.+. ..++..++|.-.|.|+.+..+++..+.  .|+|+|.++.+++.|++++...+.     ..++.+++.++
T Consensus        52 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvd~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~  123 (287)
T 1kpg_A           52 KIDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV--NVVGLTLSKNQANHVQQLVANSEN-----LRSKRVLLAGW  123 (287)
T ss_dssp             HHHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTCCC-----CSCEEEEESCG
T ss_pred             HHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC-----CCCeEEEECCh
Confidence            5677788876 468889999999999999999977653  699999999999999998876543     23688888887


Q ss_pred             chHHHHHhhhcccccccCccEEEEcc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ..+.            ..+|.|+...
T Consensus       124 ~~~~------------~~fD~v~~~~  137 (287)
T 1kpg_A          124 EQFD------------EPVDRIVSIG  137 (287)
T ss_dssp             GGCC------------CCCSEEEEES
T ss_pred             hhCC------------CCeeEEEEeC
Confidence            5431            3689888754

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.03  E-value=0.0034  Score=57.49  Aligned_cols=91  Identities=9%  Similarity=0.008  Sum_probs=68.0

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      |-....+++.+. ..++..++|.-.|.|..+..+++.   ..+++++|+++++++.|+++++.++.     ..++.+++.
T Consensus        77 ~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~  147 (248)
T 2yvl_A           77 PKDSFYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNL-----GKNVKFFNV  147 (248)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTC-----CTTEEEECS
T ss_pred             chhHHHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCC-----CCcEEEEEc
Confidence            445556677775 468899999999999999999987   35799999999999999998876543     136788888


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEccC
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      ++.+.   +.      ....+|.|+.|.+
T Consensus       148 d~~~~---~~------~~~~~D~v~~~~~  167 (248)
T 2yvl_A          148 DFKDA---EV------PEGIFHAAFVDVR  167 (248)
T ss_dssp             CTTTS---CC------CTTCBSEEEECSS
T ss_pred             Chhhc---cc------CCCcccEEEECCc
Confidence            77542   10      1136999998543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.02  E-value=0.001  Score=66.78  Aligned_cols=93  Identities=13%  Similarity=0.043  Sum_probs=70.1

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      +.|...++...  ..++..++|..+|.|+.+..++...+. +.|+|+|+|+.+++.|+++++..+.     ..+++++++
T Consensus       204 ~~la~~l~~~~--~~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl-----~~~i~~~~~  275 (373)
T 3tm4_A          204 ASIANAMIELA--ELDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGV-----LDKIKFIQG  275 (373)
T ss_dssp             HHHHHHHHHHH--TCCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTC-----GGGCEEEEC
T ss_pred             HHHHHHHHHhh--cCCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEEC
Confidence            33444555554  357889999999999999988876553 4699999999999999999877643     236888999


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ++.++.    .     ....+|.|+.|.=|
T Consensus       276 D~~~~~----~-----~~~~fD~Ii~npPy  296 (373)
T 3tm4_A          276 DATQLS----Q-----YVDSVDFAISNLPY  296 (373)
T ss_dssp             CGGGGG----G-----TCSCEEEEEEECCC
T ss_pred             ChhhCC----c-----ccCCcCEEEECCCC
Confidence            988753    1     12369999998754

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.01  E-value=0.0022  Score=64.58  Aligned_cols=90  Identities=14%  Similarity=0.089  Sum_probs=65.2

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      ...+..+.  +++..++|+..|.|+.+..+++. + .+.|+|+|+++.|++.|+++++..+.     ..++++++++..+
T Consensus       208 ~~~~~~~~--~~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~-----~~~v~~~~~d~~~  278 (396)
T 2as0_A          208 RLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGV-----EDRMKFIVGSAFE  278 (396)
T ss_dssp             HHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHH
T ss_pred             HHHHHHHh--hCCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCC-----CccceEEECCHHH
Confidence            34444442  37789999999999999999876 3 35799999999999999998876532     1268889888665


Q ss_pred             HHHHHhhhcccccccCccEEEEcc
Q 012954          202 IKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +...+...     ...+|.|++|.
T Consensus       279 ~~~~~~~~-----~~~fD~Vi~dp  297 (396)
T 2as0_A          279 EMEKLQKK-----GEKFDIVVLDP  297 (396)
T ss_dssp             HHHHHHHT-----TCCEEEEEECC
T ss_pred             HHHHHHhh-----CCCCCEEEECC
Confidence            43332211     13699999853

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.00  E-value=0.0015  Score=60.16  Aligned_cols=81  Identities=11%  Similarity=0.011  Sum_probs=59.4

Q ss_pred             CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          131 SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       131 ~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      ..++..++|.-.|.|+.+..+++.+++.++|+|+|.++.+++.+.+..+..        .+++++++++.+... +... 
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--------~~v~~~~~d~~~~~~-~~~~-  144 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--------TNIIPVIEDARHPHK-YRML-  144 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--------TTEEEECSCTTCGGG-GGGG-
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--------CCeEEEEcccCChhh-hccc-
Confidence            357889999999999999999998754468999999999877766544332        267888888876321 1111 


Q ss_pred             ccccccCccEEEEcc
Q 012954          211 ENILRSGVDAILMDL  225 (452)
Q Consensus       211 ~~l~~~~VDGILfDL  225 (452)
                          ...+|.|+.|+
T Consensus       145 ----~~~~D~V~~~~  155 (233)
T 2ipx_A          145 ----IAMVDVIFADV  155 (233)
T ss_dssp             ----CCCEEEEEECC
T ss_pred             ----CCcEEEEEEcC
Confidence                23699999864

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=96.99  E-value=0.0015  Score=59.08  Aligned_cols=96  Identities=22%  Similarity=0.203  Sum_probs=67.2

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      .|..++.+++.+. ..++..++|.-.|.|..+..+++..+. ..++|+|+++.+++.|++++...+... ....++.+++
T Consensus        14 ~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~v~~~~   90 (219)
T 3jwg_A           14 NQQRLGTVVAVLK-SVNAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLKIDRLPE-MQRKRISLFQ   90 (219)
T ss_dssp             HHHHHHHHHHHHH-HTTCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHTGGGSCH-HHHTTEEEEE
T ss_pred             hHHHHHHHHHHHh-hcCCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHHhhcccc-ccCcceEEEe
Confidence            3445677777776 347789999999999999998887665 479999999999999999876543200 0001577888


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEc
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ++...+.    .     ....+|.|+..
T Consensus        91 ~d~~~~~----~-----~~~~fD~V~~~  109 (219)
T 3jwg_A           91 SSLVYRD----K-----RFSGYDAATVI  109 (219)
T ss_dssp             CCSSSCC----G-----GGTTCSEEEEE
T ss_pred             Ccccccc----c-----ccCCCCEEEEH
Confidence            7764321    1     12368888863

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=96.99  E-value=0.0011  Score=62.51  Aligned_cols=56  Identities=20%  Similarity=0.224  Sum_probs=45.5

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAH  177 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~r  177 (452)
                      -+.++++.+....++..++|.-+|.|+.+..+++. +. .+|+|+|+++.+++.|+++
T Consensus        24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~-~~V~gvDis~~ml~~a~~~   79 (232)
T 3opn_A           24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GA-KLVYALDVGTNQLAWKIRS   79 (232)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEECSSCCCCCHHHHT
T ss_pred             HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CC-CEEEEEcCCHHHHHHHHHh
Confidence            36788888864335669999999999999999987 32 3799999999999987653

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=96.99  E-value=0.0033  Score=63.36  Aligned_cols=83  Identities=16%  Similarity=0.143  Sum_probs=61.7

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|+-.|.|+-+..+++..  .+.|+|+|+++.|++.|+++++..+..    ..++++++++..++...+...   
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~----~~~v~~~~~D~~~~~~~~~~~---  290 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDR---  290 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCC----GGGEEEEESCHHHHHHHHHHT---
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECCHHHHHHHHHhc---
Confidence            67899999999999999998752  357999999999999999988754320    126888888876543322211   


Q ss_pred             ccccCccEEEEccC
Q 012954          213 ILRSGVDAILMDLG  226 (452)
Q Consensus       213 l~~~~VDGILfDLG  226 (452)
                        ...+|.|++|.-
T Consensus       291 --~~~fD~Ii~dpP  302 (396)
T 3c0k_A          291 --GEKFDVIVMDPP  302 (396)
T ss_dssp             --TCCEEEEEECCS
T ss_pred             --CCCCCEEEECCC
Confidence              136999999853

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=96.98  E-value=0.002  Score=60.90  Aligned_cols=79  Identities=6%  Similarity=0.098  Sum_probs=65.7

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      .++-+-+-+++.+++.+. ..++..++|.-.|.|..|..+++..   ++|+|+|+|+.+++.++++++..        .+
T Consensus        10 Q~fl~d~~~~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~--------~~   77 (244)
T 1qam_A           10 QNFITSKHNIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDH--------DN   77 (244)
T ss_dssp             CCBCCCHHHHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTC--------CS
T ss_pred             ccccCCHHHHHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccC--------CC
Confidence            356677788999999997 4688899999999999999999885   57999999999999999877542        26


Q ss_pred             EEEEccCcchH
Q 012954          192 THTFAKNFRHI  202 (452)
Q Consensus       192 ~~li~~nF~~i  202 (452)
                      ++++++++..+
T Consensus        78 v~~~~~D~~~~   88 (244)
T 1qam_A           78 FQVLNKDILQF   88 (244)
T ss_dssp             EEEECCCGGGC
T ss_pred             eEEEEChHHhC
Confidence            88888887653

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=96.97  E-value=0.0015  Score=59.03  Aligned_cols=96  Identities=15%  Similarity=0.124  Sum_probs=67.4

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      .|..++.+++.+. ..++..++|.-+|.|..+..+++..+. ..|+|+|+++.+++.|++++...+... ....++.+++
T Consensus        14 ~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~v~~~~   90 (217)
T 3jwh_A           14 NQQRMNGVVAALK-QSNARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPR-NQWERLQLIQ   90 (217)
T ss_dssp             HHHHHHHHHHHHH-HTTCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCH-HHHTTEEEEE
T ss_pred             HHHHHHHHHHHHH-hcCCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCc-ccCcceEEEe
Confidence            3456677777776 357889999999999999998876654 479999999999999999876432100 0001578888


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEc
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ++...+.    .     ....+|.|+..
T Consensus        91 ~d~~~~~----~-----~~~~fD~v~~~  109 (217)
T 3jwh_A           91 GALTYQD----K-----RFHGYDAATVI  109 (217)
T ss_dssp             CCTTSCC----G-----GGCSCSEEEEE
T ss_pred             CCccccc----c-----cCCCcCEEeeH
Confidence            8764321    1     12468988864

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=96.96  E-value=0.0035  Score=62.80  Aligned_cols=75  Identities=15%  Similarity=0.139  Sum_probs=60.0

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      ..|++.+++.+. . .++.++|+..|.|+.+..+.+..   .+|+|+|+++.|++.|+++++..+.      .+++++++
T Consensus       200 ~~l~~~~~~~~~-~-~~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~------~~v~~~~~  268 (369)
T 3bt7_A          200 IQMLEWALDVTK-G-SKGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHI------DNVQIIRM  268 (369)
T ss_dssp             HHHHHHHHHHTT-T-CCSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTC------CSEEEECC
T ss_pred             HHHHHHHHHHhh-c-CCCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC------CceEEEEC
Confidence            468888899886 3 36789999999999999776532   4799999999999999998876542      26888998


Q ss_pred             CcchHH
Q 012954          198 NFRHIK  203 (452)
Q Consensus       198 nF~~i~  203 (452)
                      +..++.
T Consensus       269 d~~~~~  274 (369)
T 3bt7_A          269 AAEEFT  274 (369)
T ss_dssp             CSHHHH
T ss_pred             CHHHHH
Confidence            876654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=96.96  E-value=0.0024  Score=64.13  Aligned_cols=85  Identities=14%  Similarity=0.058  Sum_probs=62.9

Q ss_pred             HhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH
Q 012954          125 LDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS  204 (452)
Q Consensus       125 l~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~  204 (452)
                      ...+... ++..++|+..|.|+.+..+++.   ...|+|+|+++.|++.|+++++..+.      .++++++++..++..
T Consensus       202 ~~~~~~~-~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~------~~~~~~~~d~~~~~~  271 (382)
T 1wxx_A          202 RLYMERF-RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLR  271 (382)
T ss_dssp             HHHGGGC-CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHH
T ss_pred             HHHHHhc-CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC------CCceEEECCHHHHHH
Confidence            3344433 6779999999999999999987   35799999999999999998876543      247888888765433


Q ss_pred             HHhhhcccccccCccEEEEc
Q 012954          205 VLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       205 ~L~~~~~~l~~~~VDGILfD  224 (452)
                      .+...     ...+|.|++|
T Consensus       272 ~~~~~-----~~~fD~Ii~d  286 (382)
T 1wxx_A          272 RLEKE-----GERFDLVVLD  286 (382)
T ss_dssp             HHHHT-----TCCEEEEEEC
T ss_pred             HHHhc-----CCCeeEEEEC
Confidence            32211     1369999974

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.95  E-value=0.0029  Score=58.25  Aligned_cols=84  Identities=17%  Similarity=0.189  Sum_probs=62.6

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      ++.+++..+. ..++..++|.-+|.|.++..+++.   ...|+|+|.++.+++.|++++...+.       ++.+++.++
T Consensus        29 ~~~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~   97 (252)
T 1wzn_A           29 FVEEIFKEDA-KREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL-------KIEFLQGDV   97 (252)
T ss_dssp             HHHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-------CCEEEESCG
T ss_pred             HHHHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC-------ceEEEECCh
Confidence            3556666654 346789999999999999998876   24699999999999999998866432       577788877


Q ss_pred             chHHHHHhhhcccccccCccEEEEc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ..+.     .     ...+|.|++.
T Consensus        98 ~~~~-----~-----~~~fD~v~~~  112 (252)
T 1wzn_A           98 LEIA-----F-----KNEFDAVTMF  112 (252)
T ss_dssp             GGCC-----C-----CSCEEEEEEC
T ss_pred             hhcc-----c-----CCCccEEEEc
Confidence            6531     1     1358888863

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=96.93  E-value=0.0058  Score=63.55  Aligned_cols=97  Identities=14%  Similarity=0.144  Sum_probs=69.4

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHH-------HHHHhhhccCCCCC
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA-------RAHLNSLLHGQAHP  188 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~A-------k~rL~~~~~~~~~~  188 (452)
                      -.|-++.++++.+. ..++..++|..+|.|..+..+++..+. .+|+|+|+++.+++.|       +++++.++..    
T Consensus       226 t~p~~v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~-~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~----  299 (433)
T 1u2z_A          226 LLPNFLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEELKKRCKLYGMR----  299 (433)
T ss_dssp             BCHHHHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC----
T ss_pred             ccHHHHHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC----
Confidence            34778899999886 568899999999999999998887765 4799999999999999       7776665410    


Q ss_pred             CceEEEEcc-CcchHHHHHhhhcccccccCccEEEEc
Q 012954          189 HLKTHTFAK-NFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       189 ~~r~~li~~-nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ..+++++++ .+..-.. +...     ...+|.|+++
T Consensus       300 ~~nV~~i~gD~~~~~~~-~~~~-----~~~FDvIvvn  330 (433)
T 1u2z_A          300 LNNVEFSLKKSFVDNNR-VAEL-----IPQCDVILVN  330 (433)
T ss_dssp             CCCEEEEESSCSTTCHH-HHHH-----GGGCSEEEEC
T ss_pred             CCceEEEEcCccccccc-cccc-----cCCCCEEEEe
Confidence            136888774 5543111 1110     1258999863

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.91  E-value=0.0021  Score=61.94  Aligned_cols=87  Identities=14%  Similarity=0.088  Sum_probs=67.0

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      +.+++.|....++..++|.-.|.|+.+..+++.++  ..|+|+|+++.+++.|+++++..+.     ..++.++++++.+
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~  178 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG--SRVEGVTLSAAQADFGNRRARELRI-----DDHVRSRVCNMLD  178 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTS
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEECChhc
Confidence            44777775345788999999999999999998763  4699999999999999998877643     2368888888865


Q ss_pred             HHHHHhhhcccccccCccEEEEc
Q 012954          202 IKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      +.  +       ....+|.|+..
T Consensus       179 ~~--~-------~~~~fD~V~~~  192 (312)
T 3vc1_A          179 TP--F-------DKGAVTASWNN  192 (312)
T ss_dssp             CC--C-------CTTCEEEEEEE
T ss_pred             CC--C-------CCCCEeEEEEC
Confidence            42  1       12469988853

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.91  E-value=0.003  Score=60.70  Aligned_cols=86  Identities=14%  Similarity=0.135  Sum_probs=68.1

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +++.+++.+. ..++..++|.-.|.|+.+..+++.++  ..|+|+|+++.+++.|++++...+.     ..++.+++.++
T Consensus        78 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~  149 (318)
T 2fk8_A           78 KVDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDT-----NRSRQVLLQGW  149 (318)
T ss_dssp             HHHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCG
T ss_pred             HHHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECCh
Confidence            4567788776 46888999999999999999998763  3799999999999999998876543     23688888887


Q ss_pred             chHHHHHhhhcccccccCccEEEEcc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      .+++            ..+|.|+...
T Consensus       150 ~~~~------------~~fD~v~~~~  163 (318)
T 2fk8_A          150 EDFA------------EPVDRIVSIE  163 (318)
T ss_dssp             GGCC------------CCCSEEEEES
T ss_pred             HHCC------------CCcCEEEEeC
Confidence            6531            3699888764

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=96.90  E-value=0.0017  Score=62.06  Aligned_cols=96  Identities=14%  Similarity=0.111  Sum_probs=65.6

Q ss_pred             ccccchHHHHhhcc--CCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954          116 HIPVMLGEVLDVFS--SSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       116 H~PVLl~Evl~~L~--~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      +.+-+-..++..|.  ..+++..++|...|.|+.|..+.+..++.|+|+|+|.++.+++...+..+..        .++.
T Consensus        57 ~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--------~nv~  128 (232)
T 3id6_C           57 FRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--------PNIF  128 (232)
T ss_dssp             TTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--------TTEE
T ss_pred             HHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------CCeE
Confidence            45555666666653  1468999999999999999999988777789999999998764332222111        2577


Q ss_pred             EEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          194 TFAKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       194 li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +++++..+...+. ..     ...+|.|+.|+
T Consensus       129 ~i~~Da~~~~~~~-~~-----~~~~D~I~~d~  154 (232)
T 3id6_C          129 PLLADARFPQSYK-SV-----VENVDVLYVDI  154 (232)
T ss_dssp             EEECCTTCGGGTT-TT-----CCCEEEEEECC
T ss_pred             EEEcccccchhhh-cc-----ccceEEEEecC
Confidence            7777765432111 11     23699999884

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.88  E-value=0.0037  Score=58.27  Aligned_cols=90  Identities=11%  Similarity=0.096  Sum_probs=69.2

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      -+++.+++.+. ..++..++|.-.|.|..+..+++..+  ..|+|+|.++.+++.|++++...+.     ..++.+++.+
T Consensus        48 ~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d  119 (273)
T 3bus_A           48 RLTDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARATAAGL-----ANRVTFSYAD  119 (273)
T ss_dssp             HHHHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHSC--CEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECC
T ss_pred             HHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEECc
Confidence            35677888886 46889999999999999999988763  4799999999999999998876543     2368888888


Q ss_pred             cchHHHHHhhhcccccccCccEEEEcc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +.++.     .    ....+|.|+...
T Consensus       120 ~~~~~-----~----~~~~fD~v~~~~  137 (273)
T 3bus_A          120 AMDLP-----F----EDASFDAVWALE  137 (273)
T ss_dssp             TTSCC-----S----CTTCEEEEEEES
T ss_pred             cccCC-----C----CCCCccEEEEec
Confidence            76532     1    124689888643

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.83  E-value=0.0024  Score=58.89  Aligned_cols=85  Identities=15%  Similarity=0.157  Sum_probs=62.0

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      ..+.+.+  ..++..++|.-+|.|..+..+.+. +. ..|+|+|.++.+++.|+++.+..+       .++.+++++..+
T Consensus        51 ~~l~~~~--~~~~~~vLDiGcGtG~~~~~l~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~-------~~v~~~~~d~~~  119 (236)
T 1zx0_A           51 HALAAAA--SSKGGRVLEVGFGMAIAASKVQEA-PI-DEHWIIECNDGVFQRLRDWAPRQT-------HKVIPLKGLWED  119 (236)
T ss_dssp             HHHHHHH--TTTCEEEEEECCTTSHHHHHHHTS-CE-EEEEEEECCHHHHHHHHHHGGGCS-------SEEEEEESCHHH
T ss_pred             HHHHhhc--CCCCCeEEEEeccCCHHHHHHHhc-CC-CeEEEEcCCHHHHHHHHHHHHhcC-------CCeEEEecCHHH
Confidence            3444444  247889999999999888888543 33 369999999999999999776542       378888888876


Q ss_pred             HHHHHhhhcccccccCccEEEEc
Q 012954          202 IKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      +.   ...    ....+|.|+.|
T Consensus       120 ~~---~~~----~~~~fD~V~~d  135 (236)
T 1zx0_A          120 VA---PTL----PDGHFDGILYD  135 (236)
T ss_dssp             HG---GGS----CTTCEEEEEEC
T ss_pred             hh---ccc----CCCceEEEEEC
Confidence            42   211    12469999986

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=96.82  E-value=0.0048  Score=57.72  Aligned_cols=90  Identities=16%  Similarity=0.206  Sum_probs=67.1

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      +.+.+.......++..++|.-.|.|..+..+++..|. ..++|+|.++.+++.|++++...+.      .++.++..+..
T Consensus        25 l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~   97 (276)
T 3mgg_A           25 LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGI------KNVKFLQANIF   97 (276)
T ss_dssp             HHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGG
T ss_pred             HHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEcccc
Confidence            4444444433457889999999999999999988766 5799999999999999998876543      25778887776


Q ss_pred             hHHHHHhhhcccccccCccEEEEccC
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      .+.  +       ....+|.|+....
T Consensus        98 ~~~--~-------~~~~fD~v~~~~~  114 (276)
T 3mgg_A           98 SLP--F-------EDSSFDHIFVCFV  114 (276)
T ss_dssp             GCC--S-------CTTCEEEEEEESC
T ss_pred             cCC--C-------CCCCeeEEEEech
Confidence            532  1       1246898887653

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=96.80  E-value=0.0048  Score=56.86  Aligned_cols=79  Identities=13%  Similarity=0.006  Sum_probs=55.7

Q ss_pred             CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          131 SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       131 ~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      .+++..++|.-+|.|..+..+.+..+ .+.|+|+|+++.+++.+.+..+..        .++.++.++..+...+..   
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~--------~~v~~~~~d~~~~~~~~~---  122 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER--------NNIIPLLFDASKPWKYSG---  122 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC--------SSEEEECSCTTCGGGTTT---
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC--------CCeEEEEcCCCCchhhcc---
Confidence            35788999999999999998888887 578999999999876555433321        256677766554321111   


Q ss_pred             ccccccCccEEEEc
Q 012954          211 ENILRSGVDAILMD  224 (452)
Q Consensus       211 ~~l~~~~VDGILfD  224 (452)
                        + ...+|.|+.|
T Consensus       123 --~-~~~fD~V~~~  133 (210)
T 1nt2_A          123 --I-VEKVDLIYQD  133 (210)
T ss_dssp             --T-CCCEEEEEEC
T ss_pred             --c-ccceeEEEEe
Confidence              0 1469999987

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=96.79  E-value=0.0045  Score=57.47  Aligned_cols=95  Identities=13%  Similarity=0.176  Sum_probs=69.6

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      -+..+++.+. ..++..++|.-+|.|..+..+++..+   .|+|+|.++.+++.|++++...+.      .++.++.+++
T Consensus        25 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~   94 (260)
T 1vl5_A           25 DLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDA   94 (260)
T ss_dssp             CHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC
T ss_pred             HHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCC------CceEEEEecH
Confidence            5677888886 46889999999999988887777653   699999999999999998876542      2577888887


Q ss_pred             chHHHHHhhhcccccccCccEEEEccCCCccCCCCC
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP  235 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~  235 (452)
                      .++.     .    ....+|.|+....  .+++.++
T Consensus        95 ~~l~-----~----~~~~fD~V~~~~~--l~~~~d~  119 (260)
T 1vl5_A           95 EQMP-----F----TDERFHIVTCRIA--AHHFPNP  119 (260)
T ss_dssp             -CCC-----S----CTTCEEEEEEESC--GGGCSCH
T ss_pred             HhCC-----C----CCCCEEEEEEhhh--hHhcCCH
Confidence            6532     1    1246999987754  3444444

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.77  E-value=0.002  Score=62.02  Aligned_cols=79  Identities=11%  Similarity=0.165  Sum_probs=66.6

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      .++-+-|-+++.+++.+. ..++..++|.-.|.|..|..+++..   ++|+|+|+|+.+++.+++++...        .+
T Consensus         9 QnFL~d~~i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~~--------~~   76 (255)
T 3tqs_A            9 QHFLHDSFVLQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQQ--------KN   76 (255)
T ss_dssp             CCEECCHHHHHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTTC--------TT
T ss_pred             cccccCHHHHHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhhC--------CC
Confidence            556677889999999997 5688999999999999999999863   57999999999999999887642        26


Q ss_pred             EEEEccCcchH
Q 012954          192 THTFAKNFRHI  202 (452)
Q Consensus       192 ~~li~~nF~~i  202 (452)
                      ++++++++..+
T Consensus        77 v~~i~~D~~~~   87 (255)
T 3tqs_A           77 ITIYQNDALQF   87 (255)
T ss_dssp             EEEEESCTTTC
T ss_pred             cEEEEcchHhC
Confidence            88889888654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=96.75  E-value=0.0051  Score=58.02  Aligned_cols=87  Identities=16%  Similarity=0.123  Sum_probs=65.9

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      +.++++.+. . ++..++|.-.|.|..+..+++.   ...|+|+|.++.+++.|++++...+.     ..++.++++++.
T Consensus        58 l~~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~  127 (285)
T 4htf_A           58 LDRVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGV-----SDNMQFIHCAAQ  127 (285)
T ss_dssp             HHHHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CC-----GGGEEEEESCGG
T ss_pred             HHHHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEEcCHH
Confidence            456666665 2 4679999999999999888876   24799999999999999998876543     247889999987


Q ss_pred             hHHHHHhhhcccccccCccEEEEcc
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      .+....        ...+|.|+...
T Consensus       128 ~~~~~~--------~~~fD~v~~~~  144 (285)
T 4htf_A          128 DVASHL--------ETPVDLILFHA  144 (285)
T ss_dssp             GTGGGC--------SSCEEEEEEES
T ss_pred             Hhhhhc--------CCCceEEEECc
Confidence            753221        24699999863

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.74  E-value=0.0044  Score=55.74  Aligned_cols=83  Identities=16%  Similarity=0.153  Sum_probs=61.5

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +++.+++.+.   ++..++|.-.|.|..+..+++..+   .++|+|.++.+++.|++++...+       .++++++.++
T Consensus        28 ~~~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~   94 (227)
T 1ve3_A           28 LEPLLMKYMK---KRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE-------SNVEFIVGDA   94 (227)
T ss_dssp             HHHHHHHSCC---SCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT-------CCCEEEECCT
T ss_pred             HHHHHHHhcC---CCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC-------CCceEEECch
Confidence            4455555553   478999999999999988887654   69999999999999999876543       2677788877


Q ss_pred             chHHHHHhhhcccccccCccEEEEc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      .++.     .    ....+|.|+.+
T Consensus        95 ~~~~-----~----~~~~~D~v~~~  110 (227)
T 1ve3_A           95 RKLS-----F----EDKTFDYVIFI  110 (227)
T ss_dssp             TSCC-----S----CTTCEEEEEEE
T ss_pred             hcCC-----C----CCCcEEEEEEc
Confidence            6531     1    12368988876

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=96.72  E-value=0.0051  Score=54.04  Aligned_cols=84  Identities=15%  Similarity=0.031  Sum_probs=63.4

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ..++++.+. ..+++.++|.-.|.|..+..+++.   ...++|+|.++.+++.|++++...+.      .++.+++.++.
T Consensus        21 ~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~   90 (199)
T 2xvm_A           21 HSEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENL------DNLHTRVVDLN   90 (199)
T ss_dssp             CHHHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECCGG
T ss_pred             cHHHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCC------CCcEEEEcchh
Confidence            446677776 347789999999999999888876   24799999999999999998876532      25778888776


Q ss_pred             hHHHHHhhhcccccccCccEEEEc
Q 012954          201 HIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ++.         + ...+|.|+..
T Consensus        91 ~~~---------~-~~~~D~v~~~  104 (199)
T 2xvm_A           91 NLT---------F-DRQYDFILST  104 (199)
T ss_dssp             GCC---------C-CCCEEEEEEE
T ss_pred             hCC---------C-CCCceEEEEc
Confidence            532         0 1368888855

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.72  E-value=0.0043  Score=58.76  Aligned_cols=88  Identities=11%  Similarity=-0.016  Sum_probs=67.7

Q ss_pred             chHHHHhhc----cCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          120 MLGEVLDVF----SSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       120 Ll~Evl~~L----~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      +++.+++.+    . ..++..++|.-+|.|..+..+++.++  ..|+|+|+++.+++.|++++...+.     ..+++++
T Consensus        66 ~~~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~  137 (297)
T 2o57_A           66 TDEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVK  137 (297)
T ss_dssp             HHHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEE
T ss_pred             HHHHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEE
Confidence            567788887    4 45788999999999999999998764  3699999999999999998876543     2368888


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEc
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ++++..+.     .    ....+|.|+..
T Consensus       138 ~~d~~~~~-----~----~~~~fD~v~~~  157 (297)
T 2o57_A          138 YGSFLEIP-----C----EDNSYDFIWSQ  157 (297)
T ss_dssp             ECCTTSCS-----S----CTTCEEEEEEE
T ss_pred             EcCcccCC-----C----CCCCEeEEEec
Confidence            88876542     1    12368888865

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=96.72  E-value=0.0021  Score=62.59  Aligned_cols=94  Identities=11%  Similarity=0.040  Sum_probs=73.5

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      .++-+-|-+++.+++.+. ..++ .++|.-.|.|..|..+++..   ++|+|+|+|+.+++.+++++..         .+
T Consensus        27 QnfL~d~~i~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~---------~~   92 (271)
T 3fut_A           27 QNFLVSEAHLRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSG---------LP   92 (271)
T ss_dssp             CCEECCHHHHHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTT---------SS
T ss_pred             ccccCCHHHHHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCC---------CC
Confidence            556677889999999997 4678 99999999999999999874   4699999999999999987642         27


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ++++++++..++  +.+      ....|.|+.||=|
T Consensus        93 v~vi~~D~l~~~--~~~------~~~~~~iv~NlPy  120 (271)
T 3fut_A           93 VRLVFQDALLYP--WEE------VPQGSLLVANLPY  120 (271)
T ss_dssp             EEEEESCGGGSC--GGG------SCTTEEEEEEECS
T ss_pred             EEEEECChhhCC--hhh------ccCccEEEecCcc
Confidence            899999987642  111      0146778877755

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=96.71  E-value=0.0028  Score=59.14  Aligned_cols=101  Identities=10%  Similarity=0.083  Sum_probs=72.0

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHH------HHHHHHHHHhhhccCCCCCCceEE
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPS------ALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~------Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      ...++++.+. ..++..++|.-.|.|.++..+++.+++...|+|+|.++.      +++.|++++...+.     ..+++
T Consensus        31 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~-----~~~v~  104 (275)
T 3bkx_A           31 HRLAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL-----GDRLT  104 (275)
T ss_dssp             HHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT-----GGGEE
T ss_pred             HHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC-----CCceE
Confidence            3567777775 468899999999999999999998744457999999997      99999998876532     23788


Q ss_pred             EEccC-cchHHHHHhhhcccccccCccEEEEccCCCccCCCCC
Q 012954          194 TFAKN-FRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP  235 (452)
Q Consensus       194 li~~n-F~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~  235 (452)
                      +++.+ +...  .+.     +....+|.|+....+  +++.++
T Consensus       105 ~~~~d~~~~~--~~~-----~~~~~fD~v~~~~~l--~~~~~~  138 (275)
T 3bkx_A          105 VHFNTNLSDD--LGP-----IADQHFDRVVLAHSL--WYFASA  138 (275)
T ss_dssp             EECSCCTTTC--CGG-----GTTCCCSEEEEESCG--GGSSCH
T ss_pred             EEECChhhhc--cCC-----CCCCCEEEEEEccch--hhCCCH
Confidence            88887 3211  111     112469999976543  445443

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=96.68  E-value=0.0081  Score=59.74  Aligned_cols=81  Identities=14%  Similarity=-0.072  Sum_probs=60.2

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|+-.|.|+.+..++.. +  ..|+|+|+++.|++.|+++++..+..    ..++.+++++..++...+...   
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~-g--a~V~~VD~s~~al~~a~~n~~~~gl~----~~~v~~i~~D~~~~l~~~~~~---  222 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAA-G--AEVTHVDASKKAIGWAKENQVLAGLE----QAPIRWICEDAMKFIQREERR---  222 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT-T--CEEEEECSCHHHHHHHHHHHHHHTCT----TSCEEEECSCHHHHHHHHHHH---
T ss_pred             CCCcEEEcccccCHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECcHHHHHHHHHhc---
Confidence            5679999999999999999875 2  27999999999999999988765431    114888888865543222111   


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                        ...+|.|++|.
T Consensus       223 --~~~fD~Ii~dP  233 (332)
T 2igt_A          223 --GSTYDIILTDP  233 (332)
T ss_dssp             --TCCBSEEEECC
T ss_pred             --CCCceEEEECC
Confidence              13699999984

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.67  E-value=0.003  Score=58.13  Aligned_cols=86  Identities=14%  Similarity=0.084  Sum_probs=65.6

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      -++.++++.+. ..++..++|.-.|.|..+..+++.+ . ..|+|+|.++.+++.|++++...        .++++++.+
T Consensus        42 ~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d  110 (266)
T 3ujc_A           42 EATKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-G-AHTHGIDICSNIVNMANERVSGN--------NKIIFEAND  110 (266)
T ss_dssp             HHHHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-C-CEEEEEESCHHHHHHHHHTCCSC--------TTEEEEECC
T ss_pred             HHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhhcC--------CCeEEEECc
Confidence            35678888886 4688899999999999999999887 2 47999999999999999876442        257777777


Q ss_pred             cchHHHHHhhhcccccccCccEEEEc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      +.++.     .    ....+|.|+..
T Consensus       111 ~~~~~-----~----~~~~fD~v~~~  127 (266)
T 3ujc_A          111 ILTKE-----F----PENNFDLIYSR  127 (266)
T ss_dssp             TTTCC-----C----CTTCEEEEEEE
T ss_pred             cccCC-----C----CCCcEEEEeHH
Confidence            76531     1    12468888865

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=96.66  E-value=0.0039  Score=62.46  Aligned_cols=78  Identities=14%  Similarity=0.037  Sum_probs=59.4

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|.- |.|..+.++....+. ++|+|+|+|+.+++.|+++++.++.      .+++++++++.+   .+...   
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~------~~v~~~~~D~~~---~l~~~---  237 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGY------EDIEIFTFDLRK---PLPDY---  237 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTC------CCEEEECCCTTS---CCCTT---
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEEChhhh---hchhh---
Confidence            578999999 999988888766543 5799999999999999999887643      278899988765   11110   


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                       ....+|.|++|.
T Consensus       238 -~~~~fD~Vi~~~  249 (373)
T 2qm3_A          238 -ALHKFDTFITDP  249 (373)
T ss_dssp             -TSSCBSEEEECC
T ss_pred             -ccCCccEEEECC
Confidence             013699999874

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=96.61  E-value=0.0034  Score=61.30  Aligned_cols=80  Identities=9%  Similarity=0.022  Sum_probs=65.6

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCC-CCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCc
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPE-LKLHIGVDVDPSALAKARAHLNSLLHGQAHPHL  190 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~-~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~  190 (452)
                      .++-+-|-+++.+++.+. ..++..++|.-.|.|..|..+++..+. .++|+|+|+|+.+++.++++.   .       .
T Consensus        22 Q~fL~d~~i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~-------~   90 (279)
T 3uzu_A           22 QNFLVDHGVIDAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---G-------E   90 (279)
T ss_dssp             CCEECCHHHHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G-------G
T ss_pred             ccccCCHHHHHHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C-------C
Confidence            455567778999999997 468899999999999999999998543 345999999999999998873   1       2


Q ss_pred             eEEEEccCcchH
Q 012954          191 KTHTFAKNFRHI  202 (452)
Q Consensus       191 r~~li~~nF~~i  202 (452)
                      +++++++++..+
T Consensus        91 ~v~~i~~D~~~~  102 (279)
T 3uzu_A           91 LLELHAGDALTF  102 (279)
T ss_dssp             GEEEEESCGGGC
T ss_pred             CcEEEECChhcC
Confidence            688899888654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=96.55  E-value=0.0049  Score=58.18  Aligned_cols=85  Identities=13%  Similarity=0.046  Sum_probs=65.5

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      ...++++.+.. .+++.++|.-+|.|..+..+++.  . ..|+|+|+++.+++.|++++...+.       ++.+++.+.
T Consensus       108 ~~~~~~~~~~~-~~~~~vLD~GcG~G~~~~~l~~~--g-~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~d~  176 (286)
T 3m70_A          108 IHGDVVDAAKI-ISPCKVLDLGCGQGRNSLYLSLL--G-YDVTSWDHNENSIAFLNETKEKENL-------NISTALYDI  176 (286)
T ss_dssp             CCHHHHHHHHH-SCSCEEEEESCTTCHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHTTC-------CEEEEECCG
T ss_pred             hHHHHHHHhhc-cCCCcEEEECCCCCHHHHHHHHC--C-CeEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEecc
Confidence            34566777753 37889999999999999998876  2 3699999999999999998876532       678888887


Q ss_pred             chHHHHHhhhcccccccCccEEEEcc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ..+..          ...+|.|+.+.
T Consensus       177 ~~~~~----------~~~fD~i~~~~  192 (286)
T 3m70_A          177 NAANI----------QENYDFIVSTV  192 (286)
T ss_dssp             GGCCC----------CSCEEEEEECS
T ss_pred             ccccc----------cCCccEEEEcc
Confidence            65321          24699999865

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=96.54  E-value=0.0041  Score=57.27  Aligned_cols=76  Identities=14%  Similarity=0.166  Sum_probs=58.2

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|.-.|.|..+..+++..  ...|+|+|.++.+++.|++++...+.      .++.+++.++..+.     .   
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~-----~---  142 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCCGLQDFT-----P---  142 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGG------GEEEEEECCGGGCC-----C---
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCC------ceEEEEEcChhhcC-----C---
Confidence            57899999999999999888776  24799999999999999998766421      26778888776532     0   


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                       ....+|.|+++.
T Consensus       143 -~~~~fD~v~~~~  154 (241)
T 2ex4_A          143 -EPDSYDVIWIQW  154 (241)
T ss_dssp             -CSSCEEEEEEES
T ss_pred             -CCCCEEEEEEcc
Confidence             123699999763

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.53  E-value=0.006  Score=54.52  Aligned_cols=70  Identities=16%  Similarity=0.169  Sum_probs=54.6

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++..++|.-.|.|+.+..+.+. +. ..|+|+|+++.+++.|++++.           +++++++++.++.        
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~a~~~~~-----------~~~~~~~d~~~~~--------  108 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-GA-ESVTAFDIDPDAIETAKRNCG-----------GVNFMVADVSEIS--------  108 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-TB-SEEEEEESCHHHHHHHHHHCT-----------TSEEEECCGGGCC--------
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHhcC-----------CCEEEECcHHHCC--------
Confidence            46789999999999999988876 33 469999999999999988653           3566777776531        


Q ss_pred             cccccCccEEEEccC
Q 012954          212 NILRSGVDAILMDLG  226 (452)
Q Consensus       212 ~l~~~~VDGILfDLG  226 (452)
                          ..+|.|++|.=
T Consensus       109 ----~~~D~v~~~~p  119 (200)
T 1ne2_A          109 ----GKYDTWIMNPP  119 (200)
T ss_dssp             ----CCEEEEEECCC
T ss_pred             ----CCeeEEEECCC
Confidence                26899998643

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=96.51  E-value=0.0073  Score=54.84  Aligned_cols=86  Identities=17%  Similarity=0.177  Sum_probs=64.3

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      .+.-+++.+++.+.   ++..++|.-.|.|.++..+++.    ..++|+|.++.+++.|++++...+       .++.++
T Consensus        19 ~~~~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~   84 (243)
T 3d2l_A           19 PYPEWVAWVLEQVE---PGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN-------RHVDFW   84 (243)
T ss_dssp             CHHHHHHHHHHHSC---TTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT-------CCCEEE
T ss_pred             cHHHHHHHHHHHcC---CCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC-------CceEEE
Confidence            34456667777764   5689999999999998888765    479999999999999999876543       257777


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +.++.++.     .     ...+|.|+...
T Consensus        85 ~~d~~~~~-----~-----~~~fD~v~~~~  104 (243)
T 3d2l_A           85 VQDMRELE-----L-----PEPVDAITILC  104 (243)
T ss_dssp             ECCGGGCC-----C-----SSCEEEEEECT
T ss_pred             EcChhhcC-----C-----CCCcCEEEEeC
Confidence            87776531     1     13689888754

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=96.50  E-value=0.0097  Score=60.13  Aligned_cols=90  Identities=14%  Similarity=0.131  Sum_probs=67.9

Q ss_pred             HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH
Q 012954          123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI  202 (452)
Q Consensus       123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i  202 (452)
                      -+++.|. ..+++.++|.-+|.|..+..+++..|. ..|+|+|+++.+++.|+++++..+..   ...+++++.+++.. 
T Consensus       213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~---~~~~v~~~~~D~~~-  286 (375)
T 4dcm_A          213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNALS-  286 (375)
T ss_dssp             HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGG---GGGGEEEEECSTTT-
T ss_pred             HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCC---cCceEEEEechhhc-
Confidence            3677786 456789999999999999999998876 47999999999999999988765421   01257777777654 


Q ss_pred             HHHHhhhcccccccCccEEEEccCC
Q 012954          203 KSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       203 ~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                        .+       ....+|.|+.|.-+
T Consensus       287 --~~-------~~~~fD~Ii~nppf  302 (375)
T 4dcm_A          287 --GV-------EPFRFNAVLCNPPF  302 (375)
T ss_dssp             --TC-------CTTCEEEEEECCCC
T ss_pred             --cC-------CCCCeeEEEECCCc
Confidence              11       12469999988554

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=96.50  E-value=0.0097  Score=52.84  Aligned_cols=82  Identities=17%  Similarity=0.110  Sum_probs=61.9

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      .+.+.+..+.   ++ .++|.-.|.|..+..+++. +  ..++|+|.++.+++.|++++...+.       ++.+++.++
T Consensus        20 ~l~~~~~~~~---~~-~vLdiGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~d~   85 (202)
T 2kw5_A           20 FLVSVANQIP---QG-KILCLAEGEGRNACFLASL-G--YEVTAVDQSSVGLAKAKQLAQEKGV-------KITTVQSNL   85 (202)
T ss_dssp             SHHHHHHHSC---SS-EEEECCCSCTHHHHHHHTT-T--CEEEEECSSHHHHHHHHHHHHHHTC-------CEEEECCBT
T ss_pred             HHHHHHHhCC---CC-CEEEECCCCCHhHHHHHhC-C--CeEEEEECCHHHHHHHHHHHHhcCC-------ceEEEEcCh
Confidence            5677777663   55 9999999999988888765 2  3799999999999999998876532       677888877


Q ss_pred             chHHHHHhhhcccccccCccEEEEc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ..+.     .    ....+|.|+..
T Consensus        86 ~~~~-----~----~~~~fD~v~~~  101 (202)
T 2kw5_A           86 ADFD-----I----VADAWEGIVSI  101 (202)
T ss_dssp             TTBS-----C----CTTTCSEEEEE
T ss_pred             hhcC-----C----CcCCccEEEEE
Confidence            6541     1    12469999864

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=96.46  E-value=0.0049  Score=54.85  Aligned_cols=88  Identities=15%  Similarity=0.134  Sum_probs=61.5

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      ..+.+.++.+....++..++|+-.|.|..+..++...+  ..++|+|.++.+++.|++++...+.       ++.+++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~d   79 (209)
T 2p8j_A            9 PQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSRENNF-------KLNISKGD   79 (209)
T ss_dssp             THHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTT--CEEEEEECCHHHHHHHHHHHHHHTC-------CCCEEECC
T ss_pred             hhHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCC-------ceEEEECc
Confidence            34566666664334678999999999988777776643  4799999999999999998765432       45666776


Q ss_pred             cchHHHHHhhhcccccccCccEEEEc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ..++.     .    ....+|.|+..
T Consensus        80 ~~~~~-----~----~~~~fD~v~~~   96 (209)
T 2p8j_A           80 IRKLP-----F----KDESMSFVYSY   96 (209)
T ss_dssp             TTSCC-----S----CTTCEEEEEEC
T ss_pred             hhhCC-----C----CCCceeEEEEc
Confidence            65431     1    12358888763

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=96.46  E-value=0.0049  Score=63.23  Aligned_cols=81  Identities=9%  Similarity=0.010  Sum_probs=63.6

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce-EEEEccCcchHHHHHh-hh
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK-THTFAKNFRHIKSVLG-QI  209 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r-~~li~~nF~~i~~~L~-~~  209 (452)
                      +++..++|+-.|.|+=+..++++.+..+.|+++|+|+.|++.++++++..+.     .++ +++++++-..   ++. ..
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl-----~~~~v~v~~~Da~~---~l~~~~  122 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI-----PEDRYEIHGMEANF---FLRKEW  122 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC-----CGGGEEEECSCHHH---HHHSCC
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCceEEEEeCCHHH---HHHHhh
Confidence            3678999999999999999999865546799999999999999999887643     234 8888876543   343 32


Q ss_pred             cccccccCccEEEEcc
Q 012954          210 DENILRSGVDAILMDL  225 (452)
Q Consensus       210 ~~~l~~~~VDGILfDL  225 (452)
                      .     ..+|.|++|-
T Consensus       123 ~-----~~fD~V~lDP  133 (392)
T 3axs_A          123 G-----FGFDYVDLDP  133 (392)
T ss_dssp             S-----SCEEEEEECC
T ss_pred             C-----CCCcEEEECC
Confidence            1     3699999997

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=96.45  E-value=0.0073  Score=61.03  Aligned_cols=80  Identities=14%  Similarity=0.047  Sum_probs=59.3

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCc-eEEEEccCcchHHHHHhhhcc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHL-KTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~-r~~li~~nF~~i~~~L~~~~~  211 (452)
                      ++..++|+-.|.|+-+..+++. + ...|+|+|+++.|++.|+++++..+.     .. ++++++++..+....+...+ 
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~-g-a~~V~~vD~s~~al~~A~~N~~~n~~-----~~~~v~~~~~D~~~~l~~~~~~~-  283 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMG-G-AMATTSVDLAKRSRALSLAHFEANHL-----DMANHQLVVMDVFDYFKYARRHH-  283 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHT-T-BSEEEEEESCTTHHHHHHHHHHHTTC-----CCTTEEEEESCHHHHHHHHHHTT-
T ss_pred             CCCeEEEEeeccCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECCHHHHHHHHHHhC-
Confidence            6789999999999999999875 2 24799999999999999998876542     12 68888887654322222111 


Q ss_pred             cccccCccEEEEc
Q 012954          212 NILRSGVDAILMD  224 (452)
Q Consensus       212 ~l~~~~VDGILfD  224 (452)
                          ..+|.|++|
T Consensus       284 ----~~fD~Ii~D  292 (385)
T 2b78_A          284 ----LTYDIIIID  292 (385)
T ss_dssp             ----CCEEEEEEC
T ss_pred             ----CCccEEEEC
Confidence                369999987

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=96.45  E-value=0.006  Score=55.46  Aligned_cols=80  Identities=9%  Similarity=0.008  Sum_probs=55.8

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccC---CC---CCCceEE
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHG---QA---HPHLKTH  193 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~---~~---~~~~r~~  193 (452)
                      .+.+.++.+. ..++..++|.-+|.|.++..+++. +  ..|+|+|..+.+++.|+++.......   ..   ....+++
T Consensus        10 ~l~~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~-g--~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~   85 (203)
T 1pjz_A           10 DLQQYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ-G--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE   85 (203)
T ss_dssp             HHHHHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH-C--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred             HHHHHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC-C--CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccE
Confidence            3556677775 347889999999999999998876 2  36999999999999999875420000   00   0012577


Q ss_pred             EEccCcchHH
Q 012954          194 TFAKNFRHIK  203 (452)
Q Consensus       194 li~~nF~~i~  203 (452)
                      ++++++.++.
T Consensus        86 ~~~~d~~~l~   95 (203)
T 1pjz_A           86 IWCGDFFALT   95 (203)
T ss_dssp             EEEECCSSST
T ss_pred             EEECccccCC
Confidence            7888877653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=96.45  E-value=0.01  Score=56.88  Aligned_cols=98  Identities=8%  Similarity=0.053  Sum_probs=71.9

Q ss_pred             CCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceE
Q 012954          113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKT  192 (452)
Q Consensus       113 ~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~  192 (452)
                      |+-+-|-+++.+++.+. ..++..++|.-.|.|..|.  |++.+. .+|+|+|+|+.+++.+++++..+        .++
T Consensus         2 nfL~d~~i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~--l~~~~~-~~v~avEid~~~~~~a~~~~~~~--------~~v   69 (252)
T 1qyr_A            2 NFLNDQFVIDSIVSAIN-PQKGQAMVEIGPGLAALTE--PVGERL-DQLTVIELDRDLAARLQTHPFLG--------PKL   69 (252)
T ss_dssp             CEECCHHHHHHHHHHHC-CCTTCCEEEECCTTTTTHH--HHHTTC-SCEEEECCCHHHHHHHHTCTTTG--------GGE
T ss_pred             CCcCCHHHHHHHHHhcC-CCCcCEEEEECCCCcHHHH--hhhCCC-CeEEEEECCHHHHHHHHHHhccC--------Cce
Confidence            45566788999999997 4688899999999999999  565422 23999999999999998876542        278


Q ss_pred             EEEccCcchHH--HHHhhhcccccccCccEEEEccCCC
Q 012954          193 HTFAKNFRHIK--SVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       193 ~li~~nF~~i~--~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      +++++++..++  +....      ....+.|+.||-|.
T Consensus        70 ~~i~~D~~~~~~~~~~~~------~~~~~~vvsNlPY~  101 (252)
T 1qyr_A           70 TIYQQDAMTFNFGELAEK------MGQPLRVFGNLPYN  101 (252)
T ss_dssp             EEECSCGGGCCHHHHHHH------HTSCEEEEEECCTT
T ss_pred             EEEECchhhCCHHHhhcc------cCCceEEEECCCCC
Confidence            99999987642  22110      01356788888664

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=96.39  E-value=0.016  Score=59.23  Aligned_cols=85  Identities=15%  Similarity=0.118  Sum_probs=59.2

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      ...+..+.  +++..++|+..|.|+-|..++.. +  ..|+|+|+++.|++.|+++++..+..     .++  .+++   
T Consensus       205 r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~-g--a~V~avDis~~al~~a~~n~~~ng~~-----~~~--~~~D---  269 (393)
T 4dmg_A          205 RRLFEAMV--RPGERVLDVYSYVGGFALRAARK-G--AYALAVDKDLEALGVLDQAALRLGLR-----VDI--RHGE---  269 (393)
T ss_dssp             HHHHHTTC--CTTCEEEEESCTTTHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHHTCC-----CEE--EESC---
T ss_pred             HHHHHHHh--cCCCeEEEcccchhHHHHHHHHc-C--CeEEEEECCHHHHHHHHHHHHHhCCC-----CcE--EEcc---
Confidence            34444443  36899999999999999999875 2  23999999999999999988766431     233  3333   


Q ss_pred             HHHHHhhhcccccccCccEEEEccC
Q 012954          202 IKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      +.+++....     ..+|.|++|..
T Consensus       270 ~~~~l~~~~-----~~fD~Ii~dpP  289 (393)
T 4dmg_A          270 ALPTLRGLE-----GPFHHVLLDPP  289 (393)
T ss_dssp             HHHHHHTCC-----CCEEEEEECCC
T ss_pred             HHHHHHHhc-----CCCCEEEECCC
Confidence            334444321     24999998743

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=96.39  E-value=0.005  Score=55.37  Aligned_cols=81  Identities=11%  Similarity=0.249  Sum_probs=62.4

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ..++++.+. ..++..++|.-.|.|..+..+++.   ...++|+|.++.+++.|++++.   .       ++.++++++.
T Consensus        34 ~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~---~-------~~~~~~~d~~   99 (220)
T 3hnr_A           34 YEDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP---K-------EFSITEGDFL   99 (220)
T ss_dssp             HHHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC---T-------TCCEESCCSS
T ss_pred             HHHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC---C-------ceEEEeCChh
Confidence            457777776 357889999999999999998886   2479999999999999988754   1       4667788776


Q ss_pred             hHHHHHhhhcccccccCccEEEEcc
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++.         .. ..+|.|+...
T Consensus       100 ~~~---------~~-~~fD~v~~~~  114 (220)
T 3hnr_A          100 SFE---------VP-TSIDTIVSTY  114 (220)
T ss_dssp             SCC---------CC-SCCSEEEEES
T ss_pred             hcC---------CC-CCeEEEEECc
Confidence            541         01 4699998863

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=96.38  E-value=0.013  Score=53.81  Aligned_cols=78  Identities=19%  Similarity=0.151  Sum_probs=59.1

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++..++|.-+|.|..+..+++..+   .|+|+|.++.+++.|++++..         .++.+++.++.++..... .+.
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~-~~~  121 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTA---------ANISYRLLDGLVPEQAAQ-IHS  121 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCC---------TTEEEEECCTTCHHHHHH-HHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcc---------cCceEEECcccccccccc-ccc
Confidence            4678999999999999999998865   489999999999999987621         268889999888754321 110


Q ss_pred             cccccCccEEEEcc
Q 012954          212 NILRSGVDAILMDL  225 (452)
Q Consensus       212 ~l~~~~VDGILfDL  225 (452)
                         ...+|.|+.+.
T Consensus       122 ---~~~~d~v~~~~  132 (245)
T 3ggd_A          122 ---EIGDANIYMRT  132 (245)
T ss_dssp             ---HHCSCEEEEES
T ss_pred             ---ccCccEEEEcc
Confidence               12488888763

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=96.38  E-value=0.01  Score=54.76  Aligned_cols=87  Identities=16%  Similarity=0.093  Sum_probs=66.4

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      .....++.+. ..++..++|.-.|.|..+..+++..+   .|+|+|.++.+++.|++++...+.      .++.++++++
T Consensus         9 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~   78 (239)
T 1xxl_A            9 SLGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGV------ENVRFQQGTA   78 (239)
T ss_dssp             HHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTC------CSEEEEECBT
T ss_pred             CcchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCC------CCeEEEeccc
Confidence            3466788887 56889999999999988888877653   699999999999999998876543      2578888877


Q ss_pred             chHHHHHhhhcccccccCccEEEEcc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ..+.     .    ....+|.|+...
T Consensus        79 ~~~~-----~----~~~~fD~v~~~~   95 (239)
T 1xxl_A           79 ESLP-----F----PDDSFDIITCRY   95 (239)
T ss_dssp             TBCC-----S----CTTCEEEEEEES
T ss_pred             ccCC-----C----CCCcEEEEEECC
Confidence            6532     1    124689998764

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=96.37  E-value=0.021  Score=54.78  Aligned_cols=95  Identities=24%  Similarity=0.330  Sum_probs=62.8

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCC---ChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGA---AGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~---GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      ++..+++.|........++|.=+|.   |. ...++.+ .|. .+|+++|.||.+++.|++++...        .+++++
T Consensus        64 ~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~-~~~~~~~~~p~-~~v~~vD~sp~~l~~Ar~~~~~~--------~~v~~~  133 (274)
T 2qe6_A           64 VLVRGVRFLAGEAGISQFLDLGSGLPTVQN-THEVAQSVNPD-ARVVYVDIDPMVLTHGRALLAKD--------PNTAVF  133 (274)
T ss_dssp             HHHHHHHHHHTTTCCCEEEEETCCSCCSSC-HHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHTTC--------TTEEEE
T ss_pred             HHHHHHHHHhhccCCCEEEEECCCCCCCCh-HHHHHHHhCCC-CEEEEEECChHHHHHHHHhcCCC--------CCeEEE
Confidence            3556667775222447999999999   84 4444544 565 57999999999999999987431        368899


Q ss_pred             ccCcchHHHHHhhhc--ccccccCccEEEEc
Q 012954          196 AKNFRHIKSVLGQID--ENILRSGVDAILMD  224 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~--~~l~~~~VDGILfD  224 (452)
                      ++++.+...++....  ..+....+|+|++.
T Consensus       134 ~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~  164 (274)
T 2qe6_A          134 TADVRDPEYILNHPDVRRMIDFSRPAAIMLV  164 (274)
T ss_dssp             ECCTTCHHHHHHSHHHHHHCCTTSCCEEEET
T ss_pred             EeeCCCchhhhccchhhccCCCCCCEEEEEe
Confidence            999987654432110  00111357777764

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=96.35  E-value=0.0092  Score=59.06  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=58.4

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++..++|+..|.|+.+.. ++  + ...|+|+|+++.|++.|+++++..+.     ..++++++++..++.        
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s~~ai~~a~~n~~~n~l-----~~~v~~~~~D~~~~~--------  256 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDINPHAIELLKKNIKLNKL-----EHKIIPILSDVREVD--------  256 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCGGGCC--------
T ss_pred             CCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECChHHhc--------
Confidence            3688999999999999988 65  3 46799999999999999998876543     136888888876431        


Q ss_pred             cccccCccEEEEcc
Q 012954          212 NILRSGVDAILMDL  225 (452)
Q Consensus       212 ~l~~~~VDGILfDL  225 (452)
                          ..+|.|++|.
T Consensus       257 ----~~fD~Vi~dp  266 (336)
T 2yx1_A          257 ----VKGNRVIMNL  266 (336)
T ss_dssp             ----CCEEEEEECC
T ss_pred             ----CCCcEEEECC
Confidence                2699999985

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=96.34  E-value=0.0053  Score=56.47  Aligned_cols=85  Identities=15%  Similarity=0.133  Sum_probs=62.2

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      .-...++++.+. ..++..++|.-.|.|..+..+++.+|. ..++|+|.++.+++.++++..           ++.+++.
T Consensus        19 ~~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~-----------~~~~~~~   85 (259)
T 2p35_A           19 TRPARDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGV-NVITGIDSDDDMLEKAADRLP-----------NTNFGKA   85 (259)
T ss_dssp             GHHHHHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCT-TSEEEEESCHHHHHHHHHHST-----------TSEEEEC
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhCC-----------CcEEEEC
Confidence            334567888886 457889999999999999999988765 469999999999999987621           3455666


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEcc
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++..+.   .       ...+|.|+...
T Consensus        86 d~~~~~---~-------~~~fD~v~~~~  103 (259)
T 2p35_A           86 DLATWK---P-------AQKADLLYANA  103 (259)
T ss_dssp             CTTTCC---C-------SSCEEEEEEES
T ss_pred             ChhhcC---c-------cCCcCEEEEeC
Confidence            665432   0       13577777654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=96.31  E-value=0.012  Score=54.22  Aligned_cols=84  Identities=17%  Similarity=0.171  Sum_probs=63.2

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ...+++.+. ..++..++|.-.|.|..+..+++..+.  .|+|+|+++.+++.|++++..         .++.++..++.
T Consensus        33 ~~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~d~~  100 (253)
T 3g5l_A           33 WHELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTS---------PVVCYEQKAIE  100 (253)
T ss_dssp             HHHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCC---------TTEEEEECCGG
T ss_pred             HHHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhcc---------CCeEEEEcchh
Confidence            345566665 357889999999999999999887432  699999999999999987641         26788888886


Q ss_pred             hHHHHHhhhcccccccCccEEEEcc
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      .+.     .    ....+|.|+...
T Consensus       101 ~~~-----~----~~~~fD~v~~~~  116 (253)
T 3g5l_A          101 DIA-----I----EPDAYNVVLSSL  116 (253)
T ss_dssp             GCC-----C----CTTCEEEEEEES
T ss_pred             hCC-----C----CCCCeEEEEEch
Confidence            542     1    124699999853

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=96.30  E-value=0.013  Score=59.46  Aligned_cols=78  Identities=8%  Similarity=-0.066  Sum_probs=60.7

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh---------------ccCCCCCCceEEEEcc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL---------------LHGQAHPHLKTHTFAK  197 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~---------------~~~~~~~~~r~~li~~  197 (452)
                      ++..++|+-.|.|+-+..+++..+.. +|+++|+|++|++.++++++..               +.      .+++++++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~-~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl------~~i~v~~~  119 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAE-EVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE------KTIVINHD  119 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCS-EEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS------SEEEEEES
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC------CceEEEcC
Confidence            46799999999999999999987754 6999999999999999988765               32      24778887


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEcc
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +...+   +....     ..+|.|++|=
T Consensus       120 Da~~~---~~~~~-----~~fD~I~lDP  139 (378)
T 2dul_A          120 DANRL---MAERH-----RYFHFIDLDP  139 (378)
T ss_dssp             CHHHH---HHHST-----TCEEEEEECC
T ss_pred             cHHHH---HHhcc-----CCCCEEEeCC
Confidence            76544   32211     3599999883

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=96.28  E-value=0.0082  Score=57.75  Aligned_cols=61  Identities=13%  Similarity=0.281  Sum_probs=48.8

Q ss_pred             cchHHHHhhccCC-CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          119 VMLGEVLDVFSSS-RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       119 VLl~Evl~~L~~~-~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      ++++++++.+... .++..++|.-+|.|+++..+++. + ...|+|+|+++.+++.|++++...
T Consensus        19 ~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~   80 (313)
T 3bgv_A           19 VLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-R-INKLVCTDIADVSVKQCQQRYEDM   80 (313)
T ss_dssp             HHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHh
Confidence            6788888877521 26789999999999999999874 3 357999999999999999887653

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=96.25  E-value=0.0089  Score=60.68  Aligned_cols=93  Identities=11%  Similarity=0.004  Sum_probs=66.3

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCC-------------------------------------CCEE
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPE-------------------------------------LKLH  161 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~-------------------------------------~g~V  161 (452)
                      .|..-++.... ..++..++|..+|.|+-....+....+                                     ...|
T Consensus       182 ~lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  260 (385)
T 3ldu_A          182 TLAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI  260 (385)
T ss_dssp             HHHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred             HHHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence            34555555554 467889999999999887776654211                                     1359


Q ss_pred             EEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          162 IGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       162 igfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +|+|+|+.|++.|+++++..+.     ..++++.+.++.++.   .       ...+|.|+.|--|
T Consensus       261 ~GvDid~~ai~~Ar~Na~~~gl-----~~~i~~~~~D~~~l~---~-------~~~~D~Iv~NPPy  311 (385)
T 3ldu_A          261 YGYDIDEESIDIARENAEIAGV-----DEYIEFNVGDATQFK---S-------EDEFGFIITNPPY  311 (385)
T ss_dssp             EEEESCHHHHHHHHHHHHHHTC-----GGGEEEEECCGGGCC---C-------SCBSCEEEECCCC
T ss_pred             EEEECCHHHHHHHHHHHHHcCC-----CCceEEEECChhhcC---c-------CCCCcEEEECCCC
Confidence            9999999999999999877653     236888888887642   0       1358889887554

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=96.23  E-value=0.013  Score=53.58  Aligned_cols=82  Identities=10%  Similarity=0.145  Sum_probs=62.7

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      .++++.+. ..++..++|.-.|.|..+..+++..  ...|+|+|.++.+++.|++++...        .++.+++.++..
T Consensus        83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~  151 (254)
T 1xtp_A           83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM--------PVGKFILASMET  151 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS--------SEEEEEESCGGG
T ss_pred             HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC--------CceEEEEccHHH
Confidence            56677775 4578899999999999999998875  246999999999999999876543        267888887765


Q ss_pred             HHHHHhhhcccccccCccEEEE
Q 012954          202 IKSVLGQIDENILRSGVDAILM  223 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILf  223 (452)
                      +.     .    ....+|.|+.
T Consensus       152 ~~-----~----~~~~fD~v~~  164 (254)
T 1xtp_A          152 AT-----L----PPNTYDLIVI  164 (254)
T ss_dssp             CC-----C----CSSCEEEEEE
T ss_pred             CC-----C----CCCCeEEEEE
Confidence            31     1    1246898886

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=96.22  E-value=0.024  Score=53.01  Aligned_cols=79  Identities=20%  Similarity=0.195  Sum_probs=60.0

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++..++|.-+|.|+++..+++. +. ..++|+|.++.+++.|++++...+.     ..++.+++.+..++.  +.    
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~--~~----  129 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-GI-GEYYGVDIAEVSINDARVRARNMKR-----RFKVFFRAQDSYGRH--MD----  129 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-TC-SEEEEEESCHHHHHHHHHHHHTSCC-----SSEEEEEESCTTTSC--CC----
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-CC-CEEEEEECCHHHHHHHHHHHHhcCC-----CccEEEEECCccccc--cC----
Confidence            47889999999999999997765 33 4799999999999999998876532     136888888876541  10    


Q ss_pred             cccccCccEEEEcc
Q 012954          212 NILRSGVDAILMDL  225 (452)
Q Consensus       212 ~l~~~~VDGILfDL  225 (452)
                        ....+|.|+.+.
T Consensus       130 --~~~~fD~v~~~~  141 (298)
T 1ri5_A          130 --LGKEFDVISSQF  141 (298)
T ss_dssp             --CSSCEEEEEEES
T ss_pred             --CCCCcCEEEECc
Confidence              124699999874

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=96.22  E-value=0.0044  Score=59.53  Aligned_cols=77  Identities=19%  Similarity=0.180  Sum_probs=60.2

Q ss_pred             CCCCEEEEEccCCChhHHHHH-HhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          132 RTITSFVDCTLGAAGHSSAII-RAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL-~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      .++..++|.-+|.|.++..++ ...+. ..|+|+|+++.+++.|++++...+.     ..+++++++++.++.       
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~-------  183 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPG-VQLVGIDYDPEALDGATRLAAGHAL-----AGQITLHRQDAWKLD-------  183 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTT-CEEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEECCGGGCC-------
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCC-CeEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECchhcCC-------
Confidence            478899999999999888886 33444 5799999999999999998876543     346899999987642       


Q ss_pred             ccccccCccEEEEc
Q 012954          211 ENILRSGVDAILMD  224 (452)
Q Consensus       211 ~~l~~~~VDGILfD  224 (452)
                        . ...+|.|+.+
T Consensus       184 --~-~~~fD~v~~~  194 (305)
T 3ocj_A          184 --T-REGYDLLTSN  194 (305)
T ss_dssp             --C-CSCEEEEECC
T ss_pred             --c-cCCeEEEEEC
Confidence              0 1468988864

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=96.22  E-value=0.0072  Score=53.90  Aligned_cols=95  Identities=17%  Similarity=0.121  Sum_probs=66.6

Q ss_pred             CCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceE
Q 012954          113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKT  192 (452)
Q Consensus       113 ~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~  192 (452)
                      ...+.+....++++.+.. .++..++|.-.|.|..+..+++.   ...|+|+|.++.+++.|+++     .       +.
T Consensus        33 ~~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~-------~~   96 (227)
T 3e8s_A           33 IESRRQVTDQAILLAILG-RQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-----G-------AG   96 (227)
T ss_dssp             CHHHHHTHHHHHHHHHHH-TCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-----C-------SS
T ss_pred             cccccccccHHHHHHhhc-CCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-----c-------cc
Confidence            334555667778888863 46789999999999999998876   24699999999999999875     1       23


Q ss_pred             EEEccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          193 HTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       193 ~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      .+++.++..+......     ....+|.|+....+.
T Consensus        97 ~~~~~~~~~~~~~~~~-----~~~~fD~v~~~~~l~  127 (227)
T 3e8s_A           97 EVHLASYAQLAEAKVP-----VGKDYDLICANFALL  127 (227)
T ss_dssp             CEEECCHHHHHTTCSC-----CCCCEEEEEEESCCC
T ss_pred             ccchhhHHhhcccccc-----cCCCccEEEECchhh
Confidence            4566666655321111     123499999875443

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=96.21  E-value=0.0068  Score=54.44  Aligned_cols=82  Identities=16%  Similarity=0.137  Sum_probs=61.6

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      .+++..+....++..++|.-.|.|..+..+++..   ..|+|+|+++.+++.|++++...        .++++++.++.+
T Consensus        40 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~  108 (216)
T 3ofk_A           40 TQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRW--------SHISWAATDILQ  108 (216)
T ss_dssp             HHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTC--------SSEEEEECCTTT
T ss_pred             HHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccC--------CCeEEEEcchhh
Confidence            3444433224577899999999999999988763   36999999999999999887543        268888888876


Q ss_pred             HHHHHhhhcccccccCccEEEEc
Q 012954          202 IKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      +.   .       ...+|.|+..
T Consensus       109 ~~---~-------~~~fD~v~~~  121 (216)
T 3ofk_A          109 FS---T-------AELFDLIVVA  121 (216)
T ss_dssp             CC---C-------SCCEEEEEEE
T ss_pred             CC---C-------CCCccEEEEc
Confidence            53   1       2469999875

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=96.21  E-value=0.0036  Score=59.81  Aligned_cols=78  Identities=10%  Similarity=0.164  Sum_probs=63.5

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      .++-+-|-+++.+++.+. ..++..++|.-.|.|..|..+++. + ..+|+|+|+|+.+++.++++  .        ..+
T Consensus        11 Qnfl~d~~i~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~--~--------~~~   77 (249)
T 3ftd_A           11 QHLLVSEGVLKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSI--G--------DER   77 (249)
T ss_dssp             SSCEECHHHHHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS--C--------CTT
T ss_pred             ccccCCHHHHHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc--c--------CCC
Confidence            455566778999999997 468899999999999999999976 3 35799999999999998765  1        126


Q ss_pred             EEEEccCcchH
Q 012954          192 THTFAKNFRHI  202 (452)
Q Consensus       192 ~~li~~nF~~i  202 (452)
                      ++++++++..+
T Consensus        78 v~~i~~D~~~~   88 (249)
T 3ftd_A           78 LEVINEDASKF   88 (249)
T ss_dssp             EEEECSCTTTC
T ss_pred             eEEEEcchhhC
Confidence            88899888654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=96.21  E-value=0.016  Score=52.63  Aligned_cols=83  Identities=14%  Similarity=0.087  Sum_probs=60.8

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ...+.+.+. ..++..++|.-.|.|..+..+++. +. ..++|+|.++.+++.|++++..         .++.+++.++.
T Consensus        32 ~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~d~~   99 (243)
T 3bkw_A           32 WPALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEH-GA-SYVLGLDLSEKMLARARAAGPD---------TGITYERADLD   99 (243)
T ss_dssp             HHHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHTSCS---------SSEEEEECCGG
T ss_pred             HHHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHC-CC-CeEEEEcCCHHHHHHHHHhccc---------CCceEEEcChh
Confidence            345666665 457889999999999999988876 32 3799999999999999886532         25777888776


Q ss_pred             hHHHHHhhhcccccccCccEEEEc
Q 012954          201 HIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      .+.  +       ....+|.|+..
T Consensus       100 ~~~--~-------~~~~fD~v~~~  114 (243)
T 3bkw_A          100 KLH--L-------PQDSFDLAYSS  114 (243)
T ss_dssp             GCC--C-------CTTCEEEEEEE
T ss_pred             hcc--C-------CCCCceEEEEe
Confidence            532  1       12468888873

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.20  E-value=0.015  Score=51.70  Aligned_cols=81  Identities=9%  Similarity=0.013  Sum_probs=61.4

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      +..+++.+....+++.++|.-.|.|..+..+++.   ...|+|+|.++.+++.|++    .+      ..++.++++++.
T Consensus        34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~------~~~~~~~~~d~~  100 (218)
T 3ou2_A           34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HG------LDNVEFRQQDLF  100 (218)
T ss_dssp             HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GC------CTTEEEEECCTT
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cC------CCCeEEEecccc
Confidence            5566666653457789999999999999999887   2479999999999999976    11      136888888886


Q ss_pred             hHHHHHhhhcccccccCccEEEEc
Q 012954          201 HIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ++   ..       ...+|.|+..
T Consensus       101 ~~---~~-------~~~~D~v~~~  114 (218)
T 3ou2_A          101 DW---TP-------DRQWDAVFFA  114 (218)
T ss_dssp             SC---CC-------SSCEEEEEEE
T ss_pred             cC---CC-------CCceeEEEEe
Confidence            54   11       2469999875

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=96.18  E-value=0.011  Score=59.23  Aligned_cols=89  Identities=15%  Similarity=0.078  Sum_probs=65.1

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh-----c-cCCCCCCceEEEEccCcchHHHH
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL-----L-HGQAHPHLKTHTFAKNFRHIKSV  205 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~-----~-~~~~~~~~r~~li~~nF~~i~~~  205 (452)
                      .++..++|.-.|.|..+..+++.+++.+.|+|+|+++.+++.|+++++..     + ..    ..++.++++++.++...
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~----~~~v~~~~~d~~~l~~~  157 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS----RSNVRFLKGFIENLATA  157 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTT----CCCEEEEESCTTCGGGC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccC----CCceEEEEccHHHhhhc
Confidence            36789999999999999999998755568999999999999999987654     1 10    13788899988765321


Q ss_pred             HhhhcccccccCccEEEEccCC
Q 012954          206 LGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       206 L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ...   .+....+|.|+.+..+
T Consensus       158 ~~~---~~~~~~fD~V~~~~~l  176 (383)
T 4fsd_A          158 EPE---GVPDSSVDIVISNCVC  176 (383)
T ss_dssp             BSC---CCCTTCEEEEEEESCG
T ss_pred             ccC---CCCCCCEEEEEEccch
Confidence            100   0123469999987433

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=96.17  E-value=0.0055  Score=55.36  Aligned_cols=80  Identities=15%  Similarity=0.160  Sum_probs=56.3

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      -+..+.++.+. ..++..++|.-+|.|..+..+++..|. ..|+|+|+++.+++.+.+........  .+..++.+++++
T Consensus        14 ~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~~~~~a~~~~~~--~~~~~v~~~~~d   89 (218)
T 3mq2_A           14 EFSDAEFEQLR-SQYDDVVLDVGTGDGKHPYKVARQNPS-RLVVALDADKSRMEKISAKAAAKPAK--GGLPNLLYLWAT   89 (218)
T ss_dssp             ECCHHHHHHHH-TTSSEEEEEESCTTCHHHHHHHHHCTT-EEEEEEESCGGGGHHHHHHHTSCGGG--TCCTTEEEEECC
T ss_pred             ccCHHHHHHhh-ccCCCEEEEecCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhhhh--cCCCceEEEecc
Confidence            36677888887 468899999999999999999998766 57999999999887533222110000  012257777777


Q ss_pred             cchH
Q 012954          199 FRHI  202 (452)
Q Consensus       199 F~~i  202 (452)
                      ..++
T Consensus        90 ~~~l   93 (218)
T 3mq2_A           90 AERL   93 (218)
T ss_dssp             STTC
T ss_pred             hhhC
Confidence            6653

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=96.14  E-value=0.012  Score=57.50  Aligned_cols=86  Identities=17%  Similarity=0.251  Sum_probs=66.9

Q ss_pred             HHHHhhccCCCC-CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          122 GEVLDVFSSSRT-ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       122 ~Evl~~L~~~~~-ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      .++++.+. ..+ +..++|.-.|.|..+..+++.+|.. +++++|. +.+++.|++++...+.     ..+++++..+|.
T Consensus       168 ~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~  239 (352)
T 3mcz_A          168 VDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQL-TGQIWDL-PTTRDAARKTIHAHDL-----GGRVEFFEKNLL  239 (352)
T ss_dssp             HHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTC-EEEEEEC-GGGHHHHHHHHHHTTC-----GGGEEEEECCTT
T ss_pred             HHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCC-eEEEEEC-HHHHHHHHHHHHhcCC-----CCceEEEeCCcc
Confidence            47888875 345 7899999999999999999999874 6999999 8899999998876543     247999999886


Q ss_pred             hHHHHHhhhcccccccCccEEEE
Q 012954          201 HIKSVLGQIDENILRSGVDAILM  223 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILf  223 (452)
                      ......        ..++|.|++
T Consensus       240 ~~~~~~--------~~~~D~v~~  254 (352)
T 3mcz_A          240 DARNFE--------GGAADVVML  254 (352)
T ss_dssp             CGGGGT--------TCCEEEEEE
T ss_pred             cCcccC--------CCCccEEEE
Confidence            532111        235888887

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=96.08  E-value=0.011  Score=56.36  Aligned_cols=88  Identities=8%  Similarity=0.038  Sum_probs=64.4

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      .-.+..+++.+. . +++.++|.-+|.|..+..+++. +  ..|+|+|+++.+++.|++++...+..   ...++.++++
T Consensus        69 ~~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~-~--~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~~v~~~~~  140 (299)
T 3g2m_A           69 TSEAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL-G--WEVTALELSTSVLAAFRKRLAEAPAD---VRDRCTLVQG  140 (299)
T ss_dssp             HHHHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT-T--CCEEEEESCHHHHHHHHHHHHTSCHH---HHTTEEEEEC
T ss_pred             cHHHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc-C--CeEEEEECCHHHHHHHHHHHhhcccc---cccceEEEeC
Confidence            445677778875 3 4569999999999999999887 2  35999999999999999988764310   0026888888


Q ss_pred             CcchHHHHHhhhcccccccCccEEEE
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILM  223 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILf  223 (452)
                      ++.++.    .      ...+|.|++
T Consensus       141 d~~~~~----~------~~~fD~v~~  156 (299)
T 3g2m_A          141 DMSAFA----L------DKRFGTVVI  156 (299)
T ss_dssp             BTTBCC----C------SCCEEEEEE
T ss_pred             chhcCC----c------CCCcCEEEE
Confidence            877642    0      136888875

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=96.08  E-value=0.015  Score=53.40  Aligned_cols=76  Identities=17%  Similarity=0.198  Sum_probs=57.4

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++..++|.-.|.|..+..+++.   ...|+|+|.++.+++.|++++...       ..++.++++++..+.  +     
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~--~-----  100 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKIAGV-------DRKVQVVQADARAIP--L-----  100 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHTTTS-------CTTEEEEESCTTSCC--S-----
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhhcc-------CCceEEEEcccccCC--C-----
Confidence            47789999999999999998876   247999999999999999876221       236788888776542  1     


Q ss_pred             cccccCccEEEEccC
Q 012954          212 NILRSGVDAILMDLG  226 (452)
Q Consensus       212 ~l~~~~VDGILfDLG  226 (452)
                        ....+|.|+....
T Consensus       101 --~~~~fD~v~~~~~  113 (263)
T 2yqz_A          101 --PDESVHGVIVVHL  113 (263)
T ss_dssp             --CTTCEEEEEEESC
T ss_pred             --CCCCeeEEEECCc
Confidence              1236898887543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=96.07  E-value=0.02  Score=51.43  Aligned_cols=91  Identities=15%  Similarity=0.088  Sum_probs=64.4

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      ..+...+...+.   ++..++|.-.|.|..+..+++.   ...|+|+|+++.+++.|++++...+... ....++.++..
T Consensus        18 ~~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~   90 (235)
T 3sm3_A           18 LDLYPIIHNYLQ---EDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQ-KTGGKAEFKVE   90 (235)
T ss_dssp             CCCCTTHHHHCC---TTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCS-SSSCEEEEEEC
T ss_pred             HHHHHHHHHhCC---CCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCcc-ccCcceEEEEe
Confidence            345555555553   6789999999999999988876   2479999999999999999876543210 01126788888


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEc
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ++..+.     .    ....+|.|++.
T Consensus        91 d~~~~~-----~----~~~~~D~v~~~  108 (235)
T 3sm3_A           91 NASSLS-----F----HDSSFDFAVMQ  108 (235)
T ss_dssp             CTTSCC-----S----CTTCEEEEEEE
T ss_pred             cccccC-----C----CCCceeEEEEc
Confidence            876542     1    12468998875

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=96.06  E-value=0.018  Score=54.60  Aligned_cols=79  Identities=13%  Similarity=0.031  Sum_probs=61.0

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++..++|.-.|.|..+..+....|. .+|+|+|.++.+++.|+++.+..+.      .++++++++..++.   .... 
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l------~~v~~~~~d~~~~~---~~~~-  147 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGL------KGARALWGRAEVLA---REAG-  147 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEECCHHHHT---TSTT-
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCC------CceEEEECcHHHhh---cccc-
Confidence            36789999999999999988888876 4799999999999999998887653      25888998876542   1100 


Q ss_pred             cccccCccEEEE
Q 012954          212 NILRSGVDAILM  223 (452)
Q Consensus       212 ~l~~~~VDGILf  223 (452)
                        ....+|.|+.
T Consensus       148 --~~~~fD~I~s  157 (249)
T 3g89_A          148 --HREAYARAVA  157 (249)
T ss_dssp             --TTTCEEEEEE
T ss_pred             --cCCCceEEEE
Confidence              0136999985

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=96.06  E-value=0.017  Score=52.18  Aligned_cols=89  Identities=15%  Similarity=0.175  Sum_probs=64.3

Q ss_pred             cccchHHHHhhccCC-CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          117 IPVMLGEVLDVFSSS-RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~-~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      +..+.+.+.+.+... .++..++|.-.|.|.++..+++..   ..++|+|.++.+++.|++++...+.       ++.++
T Consensus        20 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~~~~-------~~~~~   89 (246)
T 1y8c_A           20 YKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGL-------KPRLA   89 (246)
T ss_dssp             HHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTC-------CCEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhhcCC-------CeEEE
Confidence            334455556665421 267899999999999999998872   3699999999999999998866432       57778


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +.++..+.     .     ...+|.|+...
T Consensus        90 ~~d~~~~~-----~-----~~~fD~v~~~~  109 (246)
T 1y8c_A           90 CQDISNLN-----I-----NRKFDLITCCL  109 (246)
T ss_dssp             CCCGGGCC-----C-----SCCEEEEEECT
T ss_pred             ecccccCC-----c-----cCCceEEEEcC
Confidence            88776531     0     13689888754

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=96.05  E-value=0.019  Score=58.26  Aligned_cols=89  Identities=12%  Similarity=0.161  Sum_probs=64.0

Q ss_pred             chHHHHhhcc-CCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          120 MLGEVLDVFS-SSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       120 Ll~Evl~~L~-~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      |++.+.+.+. ...++..++|.-+|.|..+..+++.  . ..|+|+|+++.+++.|+++++..+.       .+++++++
T Consensus       219 ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~--g-~~V~gvDis~~al~~A~~n~~~~~~-------~v~~~~~D  288 (381)
T 3dmg_A          219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM--G-AEVVGVEDDLASVLSLQKGLEANAL-------KAQALHSD  288 (381)
T ss_dssp             HHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT--T-CEEEEEESBHHHHHHHHHHHHHTTC-------CCEEEECS
T ss_pred             HHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHcCC-------CeEEEEcc
Confidence            4444444442 1236789999999999999999986  2 4799999999999999998876532       36677777


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCC
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      .....   ..      ...+|.|+.|.=+
T Consensus       289 ~~~~~---~~------~~~fD~Ii~npp~  308 (381)
T 3dmg_A          289 VDEAL---TE------EARFDIIVTNPPF  308 (381)
T ss_dssp             TTTTS---CT------TCCEEEEEECCCC
T ss_pred             hhhcc---cc------CCCeEEEEECCch
Confidence            65431   11      1469999987444

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=96.02  E-value=0.013  Score=53.61  Aligned_cols=85  Identities=18%  Similarity=0.126  Sum_probs=62.0

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      .+.+.+..+. . +++.++|.-+|.|..+..+++   ....|+|+|+++.+++.|++++...+.     ..++.+++.++
T Consensus        55 ~l~~~~~~~~-~-~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~  124 (235)
T 3lcc_A           55 LIVHLVDTSS-L-PLGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPK-----AEYFSFVKEDV  124 (235)
T ss_dssp             HHHHHHHTTC-S-CCEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGG-----GGGEEEECCCT
T ss_pred             HHHHHHHhcC-C-CCCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCC-----CcceEEEECch
Confidence            4556666554 2 456999999999988888765   235799999999999999998876432     23788899888


Q ss_pred             chHHHHHhhhcccccccCccEEEEc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ..+.   .       ...+|.|+..
T Consensus       125 ~~~~---~-------~~~fD~v~~~  139 (235)
T 3lcc_A          125 FTWR---P-------TELFDLIFDY  139 (235)
T ss_dssp             TTCC---C-------SSCEEEEEEE
T ss_pred             hcCC---C-------CCCeeEEEEC
Confidence            7532   1       1368888763

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=96.01  E-value=0.012  Score=60.12  Aligned_cols=91  Identities=11%  Similarity=0.004  Sum_probs=64.0

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCC-------------------------------------CCE
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPE-------------------------------------LKL  160 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~-------------------------------------~g~  160 (452)
                      +.|...++.... ..++..++|..+|.|.-....+....+                                     ...
T Consensus       187 e~lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  265 (393)
T 3k0b_A          187 ETMAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN  265 (393)
T ss_dssp             HHHHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             HHHHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence            344455555544 467889999999999876655543221                                     135


Q ss_pred             EEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEc
Q 012954          161 HIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       161 VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      |+|+|+|+.|++.|+++++..+.     ..++++++.++.++.    .      ...+|.|+.|
T Consensus       266 V~GvDid~~al~~Ar~Na~~~gl-----~~~I~~~~~D~~~~~----~------~~~fD~Iv~N  314 (393)
T 3k0b_A          266 IIGGDIDARLIEIAKQNAVEAGL-----GDLITFRQLQVADFQ----T------EDEYGVVVAN  314 (393)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTC-----TTCSEEEECCGGGCC----C------CCCSCEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECChHhCC----C------CCCCCEEEEC
Confidence            99999999999999999887654     235788888876531    0      1368999988

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.01  E-value=0.02  Score=55.20  Aligned_cols=82  Identities=11%  Similarity=0.174  Sum_probs=59.7

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|.-.|.|+-+..+++..+. .+|+++|+|+.+++.|++.+.......  ...++++++++...   ++...   
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~a~~~~~~~~~~~--~~~~v~~~~~D~~~---~l~~~---  148 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSV-ENIDICEIDETVIEVSKIYFKNISCGY--EDKRVNVFIEDASK---FLENV---  148 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCTTTSGGG--GSTTEEEEESCHHH---HHHHC---
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHhHHhcccc--CCCcEEEEECChHH---HHHhC---
Confidence            4579999999999999999876444 579999999999999999876431000  02378888887654   23321   


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                        ...+|.|+.|+
T Consensus       149 --~~~fD~Ii~d~  159 (283)
T 2i7c_A          149 --TNTYDVIIVDS  159 (283)
T ss_dssp             --CSCEEEEEEEC
T ss_pred             --CCCceEEEEcC
Confidence              14699999985

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=95.99  E-value=0.016  Score=56.38  Aligned_cols=82  Identities=16%  Similarity=0.177  Sum_probs=59.4

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      .+..++|.-.|.|+-+..+++..+. .+|+++|+|+.+++.|++.+..+....  ...++++++++...   ++...   
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~~~~a~~~~~~~~~~~--~~~~v~~~~~D~~~---~l~~~---  160 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSV-EKAILCEVDGLVIEAARKYLKQTSCGF--DDPRAEIVIANGAE---YVRKF---  160 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTC-SEEEEEESCHHHHHHHHHHCHHHHGGG--GCTTEEEEESCHHH---HGGGC---
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHhHhhcccc--CCCceEEEECcHHH---HHhhC---
Confidence            4579999999999999999976554 579999999999999999875421000  01378888887543   33322   


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                        ...+|.|+.|+
T Consensus       161 --~~~fD~Ii~d~  171 (296)
T 1inl_A          161 --KNEFDVIIIDS  171 (296)
T ss_dssp             --SSCEEEEEEEC
T ss_pred             --CCCceEEEEcC
Confidence              23699999984

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=95.99  E-value=0.032  Score=54.02  Aligned_cols=63  Identities=5%  Similarity=-0.176  Sum_probs=53.5

Q ss_pred             CCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       114 ~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      ..|.|-.+..+++.+. ..++..++|.-+|.|..+..+++.   ...|+|+|.++.+++.|++++..
T Consensus        27 ~~~~~~~~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~   89 (261)
T 3iv6_A           27 VAARPSDRENDIFLEN-IVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALAD   89 (261)
T ss_dssp             GGGSCCHHHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSS
T ss_pred             ccccHHHHHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHh
Confidence            3455888999999997 568899999999999999988876   24699999999999999987643

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=95.98  E-value=0.017  Score=57.01  Aligned_cols=82  Identities=11%  Similarity=0.172  Sum_probs=59.7

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|.-.|.|+-+..+++..+. .+|+++|+|+.+++.|++++..+...  ....++++++++...   ++...   
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDis~~~l~~ar~~~~~~~~~--~~~~~v~~~~~D~~~---~l~~~---  186 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSV-ENIDICEIDETVIEVSKIYFKNISCG--YEDKRVNVFIEDASK---FLENV---  186 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCTTTSGG--GGSTTEEEEESCHHH---HHHHC---
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHhhccc--cCCCcEEEEEccHHH---HHhhc---
Confidence            4579999999999999999875544 57999999999999999987652100  001378888887654   23221   


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                        ...+|.|+.|.
T Consensus       187 --~~~fDvIi~d~  197 (321)
T 2pt6_A          187 --TNTYDVIIVDS  197 (321)
T ss_dssp             --CSCEEEEEEEC
T ss_pred             --CCCceEEEECC
Confidence              13699999985

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=95.92  E-value=0.019  Score=56.28  Aligned_cols=83  Identities=16%  Similarity=0.226  Sum_probs=59.7

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      +...++|.-.|.|+-+..+++..+. .+|+++|+|+.+++.|++.+...... .....+++++.++....   +...   
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~ar~~~~~~~~~-~~~~~~v~~~~~D~~~~---l~~~---  148 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTV-EKAVMVDIDGELVEVAKRHMPEWHQG-AFDDPRAVLVIDDARAY---LERT---  148 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTC-CEEEEEESCHHHHHHHHHHCHHHHTT-GGGCTTEEEEESCHHHH---HHHC---
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHhHhhccc-cccCCceEEEEchHHHH---HHhc---
Confidence            4579999999999999999876544 57999999999999999987542100 00013788888876542   3322   


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                        ...+|.|+.|+
T Consensus       149 --~~~fD~Ii~d~  159 (314)
T 1uir_A          149 --EERYDVVIIDL  159 (314)
T ss_dssp             --CCCEEEEEEEC
T ss_pred             --CCCccEEEECC
Confidence              24699999984

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=95.92  E-value=0.017  Score=55.56  Aligned_cols=82  Identities=15%  Similarity=0.125  Sum_probs=59.8

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ....++|.-.|.|+-+..+++..+. .+|+++|+|+.+++.|++.+..+....  ...|+++++++...   ++...   
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vEid~~~v~~ar~~~~~~~~~~--~~~rv~v~~~D~~~---~l~~~---  145 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSV-KKATLVDIDGKVIEYSKKFLPSIAGKL--DDPRVDVQVDDGFM---HIAKS---  145 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTC-SEEEEEESCHHHHHHHHHHCHHHHTTT--TSTTEEEEESCSHH---HHHTC---
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCC-ceEEEEECCHHHHHHHHHHhHhhcccc--CCCceEEEECcHHH---HHhhC---
Confidence            4579999999999999999876443 579999999999999999875431100  12478888887653   33322   


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                        ...+|.|+.|+
T Consensus       146 --~~~fD~Ii~d~  156 (275)
T 1iy9_A          146 --ENQYDVIMVDS  156 (275)
T ss_dssp             --CSCEEEEEESC
T ss_pred             --CCCeeEEEECC
Confidence              14699999974

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.88  E-value=0.018  Score=50.89  Aligned_cols=75  Identities=13%  Similarity=0.076  Sum_probs=55.9

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++..++|.-.|.|..+..+++..+.  .++|+|+++.+++.|++++...        .++.+++.+..++.     .  
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~--------~~i~~~~~d~~~~~-----~--  103 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHV--------PQLRWETMDVRKLD-----F--  103 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTC--------TTCEEEECCTTSCC-----S--
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccC--------CCcEEEEcchhcCC-----C--
Confidence            36789999999999999988877432  5999999999999999876531        25677777766531     1  


Q ss_pred             cccccCccEEEEcc
Q 012954          212 NILRSGVDAILMDL  225 (452)
Q Consensus       212 ~l~~~~VDGILfDL  225 (452)
                        ....+|.|+.+.
T Consensus       104 --~~~~fD~v~~~~  115 (215)
T 2pxx_A          104 --PSASFDVVLEKG  115 (215)
T ss_dssp             --CSSCEEEEEEES
T ss_pred             --CCCcccEEEECc
Confidence              124688888754

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=95.87  E-value=0.013  Score=65.88  Aligned_cols=95  Identities=20%  Similarity=0.224  Sum_probs=69.7

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      .++.+++.|. ..++..++|.-.|.|..+..+++..++...|+|+|+++.+++.|++++.........+..++++++++.
T Consensus       709 Rle~LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa  787 (950)
T 3htx_A          709 RVEYALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI  787 (950)
T ss_dssp             HHHHHHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred             HHHHHHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence            5666777776 347889999999999888888877655467999999999999999988754211011234788999888


Q ss_pred             chHHHHHhhhcccccccCccEEEEc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      .++..         ....+|.|+..
T Consensus       788 ~dLp~---------~d~sFDlVV~~  803 (950)
T 3htx_A          788 LEFDS---------RLHDVDIGTCL  803 (950)
T ss_dssp             TSCCT---------TSCSCCEEEEE
T ss_pred             HhCCc---------ccCCeeEEEEe
Confidence            76421         12469999883

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=95.86  E-value=0.024  Score=55.32  Aligned_cols=83  Identities=12%  Similarity=0.137  Sum_probs=59.2

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|.-+|.|+-+..+++..+. .+|+++|+|+.+++.|++.+.......  ...+++++.++...+   +....  
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~a~~~~~~~~~~~--~~~~v~~~~~D~~~~---~~~~~--  166 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTV-EHCDLVDIDGEVMEQSKQHFPQISRSL--ADPRATVRVGDGLAF---VRQTP--  166 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGG--GCTTEEEEESCHHHH---HHSSC--
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHhHHhhccc--CCCcEEEEECcHHHH---HHhcc--
Confidence            5679999999999999999976444 579999999999999998774321000  023788888876543   32210  


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                        ...+|.|+.|.
T Consensus       167 --~~~fDvIi~d~  177 (304)
T 3bwc_A          167 --DNTYDVVIIDT  177 (304)
T ss_dssp             --TTCEEEEEEEC
T ss_pred             --CCceeEEEECC
Confidence              23699999963

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=95.85  E-value=0.022  Score=54.51  Aligned_cols=70  Identities=13%  Similarity=-0.014  Sum_probs=52.7

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      |+.+.+++   .++..++|.-.|.|-=+.+++.. .+..+|+|+|+|+.|++.|+++++.++.     ..++++++++-
T Consensus        12 L~~i~~~v---~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl-----~~~I~~~~gD~   81 (230)
T 3lec_A           12 LQKVANYV---PKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGL-----TSKIDVRLANG   81 (230)
T ss_dssp             HHHHHTTS---CTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSG
T ss_pred             HHHHHHhC---CCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECch
Confidence            44444444   36789999999999666655554 4445799999999999999999988764     34788888764

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=95.84  E-value=0.016  Score=59.02  Aligned_cols=90  Identities=13%  Similarity=0.028  Sum_probs=63.7

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCC-------------------------------------CCEE
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPE-------------------------------------LKLH  161 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~-------------------------------------~g~V  161 (452)
                      .|...++.... ..++..++|..+|.|+-....+....+                                     ...+
T Consensus       181 ~LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v  259 (384)
T 3ldg_A          181 NMAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI  259 (384)
T ss_dssp             HHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence            34444444443 467889999999999776655543221                                     1359


Q ss_pred             EEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEc
Q 012954          162 IGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       162 igfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      +|+|+|+.|++.|+++++..+.     ..++++++.++.++.    .      ...+|.|+.|
T Consensus       260 ~GvDid~~al~~Ar~Na~~~gl-----~~~I~~~~~D~~~l~----~------~~~fD~Iv~N  307 (384)
T 3ldg_A          260 SGFDFDGRMVEIARKNAREVGL-----EDVVKLKQMRLQDFK----T------NKINGVLISN  307 (384)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCGGGCC----C------CCCSCEEEEC
T ss_pred             EEEECCHHHHHHHHHHHHHcCC-----CCceEEEECChHHCC----c------cCCcCEEEEC
Confidence            9999999999999999887654     236888888887642    0      1368889987

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=95.84  E-value=0.025  Score=56.40  Aligned_cols=81  Identities=10%  Similarity=0.059  Sum_probs=59.8

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh--ccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL--LHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~--~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      ....++|.-.|.|+-+..+++..+. .+|+++|+|+.+++.|++++..+  +..    ..++++++++...   ++....
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~-~~V~~VDis~~~l~~Ar~~~~~~~~gl~----~~rv~~~~~D~~~---~l~~~~  191 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASI-EQIDMCEIDKMVVDVSKQFFPDVAIGYE----DPRVNLVIGDGVA---FLKNAA  191 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGG----STTEEEEESCHHH---HHHTSC
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHhhccccC----CCcEEEEECCHHH---HHHhcc
Confidence            4579999999999999998876544 57999999999999999987643  110    1378888887653   333221


Q ss_pred             ccccccCccEEEEcc
Q 012954          211 ENILRSGVDAILMDL  225 (452)
Q Consensus       211 ~~l~~~~VDGILfDL  225 (452)
                          ...+|.|+.|.
T Consensus       192 ----~~~fDlIi~d~  202 (334)
T 1xj5_A          192 ----EGSYDAVIVDS  202 (334)
T ss_dssp             ----TTCEEEEEECC
T ss_pred             ----CCCccEEEECC
Confidence                13699999975

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=95.83  E-value=0.0035  Score=58.88  Aligned_cols=78  Identities=12%  Similarity=0.052  Sum_probs=55.8

Q ss_pred             CCCEEEEEccCCChhHHHHHHh---CCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhh
Q 012954          133 TITSFVDCTLGAAGHSSAIIRA---HPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQI  209 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~---~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~  209 (452)
                      ++..++|.-.|.|+.|..+++.   +.+.++|+|+|+++.+++.|+.    ..       .++++++++..++.. +...
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~-------~~v~~~~gD~~~~~~-l~~~  148 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DM-------ENITLHQGDCSDLTT-FEHL  148 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GC-------TTEEEEECCSSCSGG-GGGG
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cC-------CceEEEECcchhHHH-HHhh
Confidence            4579999999999999988876   4445789999999999987761    11       268888888765311 1211


Q ss_pred             cccccccCccEEEEccC
Q 012954          210 DENILRSGVDAILMDLG  226 (452)
Q Consensus       210 ~~~l~~~~VDGILfDLG  226 (452)
                      .    ...+|.|++|.+
T Consensus       149 ~----~~~fD~I~~d~~  161 (236)
T 2bm8_A          149 R----EMAHPLIFIDNA  161 (236)
T ss_dssp             S----SSCSSEEEEESS
T ss_pred             c----cCCCCEEEECCc
Confidence            1    125899997654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=95.82  E-value=0.029  Score=55.21  Aligned_cols=80  Identities=21%  Similarity=0.266  Sum_probs=60.7

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCC--ChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGA--AGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~--GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      +..++.+|........++|.=+|.  +|.+..+++. .|+ .+|+++|.||.+|+.|+++|....      ..++.+++.
T Consensus        66 l~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~-arVv~VD~sp~mLa~Ar~~l~~~~------~~~~~~v~a  138 (277)
T 3giw_A           66 MNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPE-SRVVYVDNDPIVLTLSQGLLASTP------EGRTAYVEA  138 (277)
T ss_dssp             HHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTT-CEEEEEECCHHHHHTTHHHHCCCS------SSEEEEEEC
T ss_pred             HHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHhccCC------CCcEEEEEe
Confidence            444566664211336899999887  7899999887 465 689999999999999999886532      237899999


Q ss_pred             CcchHHHHHh
Q 012954          198 NFRHIKSVLG  207 (452)
Q Consensus       198 nF~~i~~~L~  207 (452)
                      ++.+...++.
T Consensus       139 D~~~~~~~l~  148 (277)
T 3giw_A          139 DMLDPASILD  148 (277)
T ss_dssp             CTTCHHHHHT
T ss_pred             cccChhhhhc
Confidence            9999876654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=95.80  E-value=0.025  Score=51.38  Aligned_cols=82  Identities=11%  Similarity=0.112  Sum_probs=60.5

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .++..+.+.+.   ++..++|.-.|.|..+..+++.   ...|+|+|.++.+++.|+++..         ..++++++.+
T Consensus        42 ~~~~~l~~~~~---~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d  106 (242)
T 3l8d_A           42 TIIPFFEQYVK---KEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERGE---------GPDLSFIKGD  106 (242)
T ss_dssp             THHHHHHHHSC---TTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTTC---------BTTEEEEECB
T ss_pred             HHHHHHHHHcC---CCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhcc---------cCCceEEEcc
Confidence            45555555553   6789999999999999988886   2469999999999999987641         1367888888


Q ss_pred             cchHHHHHhhhcccccccCccEEEEc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      +.++.  +       ....+|.|+..
T Consensus       107 ~~~~~--~-------~~~~fD~v~~~  123 (242)
T 3l8d_A          107 LSSLP--F-------ENEQFEAIMAI  123 (242)
T ss_dssp             TTBCS--S-------CTTCEEEEEEE
T ss_pred             hhcCC--C-------CCCCccEEEEc
Confidence            76542  1       12468988874

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=95.78  E-value=0.0076  Score=56.23  Aligned_cols=77  Identities=9%  Similarity=0.032  Sum_probs=55.0

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHH-HH---HHHHHhhhccCCCCCCceE
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSAL-AK---ARAHLNSLLHGQAHPHLKT  192 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai-~~---Ak~rL~~~~~~~~~~~~r~  192 (452)
                      +|--..|+++.+.  .++..++|.-+|.|..+..+.+..+. ..|+|+|.++.++ +.   |+++.+..+.      .++
T Consensus        10 ~~~~~~~~~~~~~--~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GvD~s~~~ml~~A~~A~~~~~~~~~------~~v   80 (225)
T 3p2e_A           10 VDLSKDELTEIIG--QFDRVHIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENLFDISKKIIKKPSKGGL------SNV   80 (225)
T ss_dssp             ECCCHHHHHHHHT--TCSEEEEEETCTTSHHHHHHHHTCTT-EEEEEECSCCGGGHHHHHHHTSCGGGTCC------SSE
T ss_pred             ccCCHHHHHHHhC--CCCCEEEEEeccCcHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHHHHHcCC------CCe
Confidence            4455677777775  57889999999999999998876665 5799999995554 44   4666554322      256


Q ss_pred             EEEccCcchH
Q 012954          193 HTFAKNFRHI  202 (452)
Q Consensus       193 ~li~~nF~~i  202 (452)
                      .+++++...+
T Consensus        81 ~~~~~d~~~l   90 (225)
T 3p2e_A           81 VFVIAAAESL   90 (225)
T ss_dssp             EEECCBTTBC
T ss_pred             EEEEcCHHHh
Confidence            7777776654

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=95.78  E-value=0.016  Score=52.21  Aligned_cols=83  Identities=12%  Similarity=0.081  Sum_probs=59.8

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +.+.+++.+....++..++|.-.|.|..+..+++..+   .|+|+|.++.+++.|++++..          ++.++++++
T Consensus        29 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~----------~v~~~~~d~   95 (250)
T 2p7i_A           29 MHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKD----------GITYIHSRF   95 (250)
T ss_dssp             HHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCS----------CEEEEESCG
T ss_pred             HHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhC----------CeEEEEccH
Confidence            3455566664223667899999999999888887644   489999999999999886532          467777777


Q ss_pred             chHHHHHhhhcccccccCccEEEEcc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      .++   ..       ...+|.|+...
T Consensus        96 ~~~---~~-------~~~fD~v~~~~  111 (250)
T 2p7i_A           96 EDA---QL-------PRRYDNIVLTH  111 (250)
T ss_dssp             GGC---CC-------SSCEEEEEEES
T ss_pred             HHc---Cc-------CCcccEEEEhh
Confidence            654   11       23688888754

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=95.76  E-value=0.026  Score=54.27  Aligned_cols=81  Identities=15%  Similarity=0.185  Sum_probs=58.0

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCC-----CCCCceEEEEccCcchHHHHHh
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQ-----AHPHLKTHTFAKNFRHIKSVLG  207 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~-----~~~~~r~~li~~nF~~i~~~L~  207 (452)
                      ++..++|.-.|.|+-+..+++. +. .+|+++|+|+.+++.|++.+ ......     +....+++++.++...   ++.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~-~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~---~l~  148 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DV-DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFE---FIK  148 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CC-SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHH---HHH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CC-CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHH---Hhc
Confidence            4579999999999999999987 54 57999999999999999987 331000     0002378888876543   333


Q ss_pred             hhcccccccCccEEEEcc
Q 012954          208 QIDENILRSGVDAILMDL  225 (452)
Q Consensus       208 ~~~~~l~~~~VDGILfDL  225 (452)
                      . .     ..+|.|+.|+
T Consensus       149 ~-~-----~~fD~Ii~d~  160 (281)
T 1mjf_A          149 N-N-----RGFDVIIADS  160 (281)
T ss_dssp             H-C-----CCEEEEEEEC
T ss_pred             c-c-----CCeeEEEECC
Confidence            2 1     3699999884

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=95.76  E-value=0.025  Score=53.84  Aligned_cols=61  Identities=13%  Similarity=-0.009  Sum_probs=48.9

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      ++..++|.-.|.|-=+.+++...+ .++|+|+|+|+.|++.|+++++.++.     .+++++++++-
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl-----~~~i~~~~~d~   75 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGL-----KEKIQVRLANG   75 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEECch
Confidence            678999999999966666665444 45799999999999999999988764     24688888764

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=95.74  E-value=0.036  Score=54.84  Aligned_cols=86  Identities=15%  Similarity=0.054  Sum_probs=63.6

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      +.+.+.+. ..++..++|.-.|.|..+..+++. +. .+|+|+|.++ +++.|+++++..+.     ..++++++++..+
T Consensus        54 ~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~-~~v~gvD~s~-~~~~a~~~~~~~~~-----~~~i~~~~~d~~~  124 (340)
T 2fyt_A           54 DFIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GA-KKVLGVDQSE-ILYQAMDIIRLNKL-----EDTITLIKGKIEE  124 (340)
T ss_dssp             HHHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEESST-HHHHHHHHHHHTTC-----TTTEEEEESCTTT
T ss_pred             HHHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CC-CEEEEEChHH-HHHHHHHHHHHcCC-----CCcEEEEEeeHHH
Confidence            44455554 357889999999999988888775 43 4799999997 89999998876543     1378888888775


Q ss_pred             HHHHHhhhcccccccCccEEEEcc
Q 012954          202 IKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +.     .    ....+|.|+.+.
T Consensus       125 ~~-----~----~~~~~D~Ivs~~  139 (340)
T 2fyt_A          125 VH-----L----PVEKVDVIISEW  139 (340)
T ss_dssp             SC-----C----SCSCEEEEEECC
T ss_pred             hc-----C----CCCcEEEEEEcC
Confidence            41     1    124699999875

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=95.72  E-value=0.026  Score=48.84  Aligned_cols=78  Identities=13%  Similarity=0.214  Sum_probs=57.3

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      .++++.+.  .++..++|.-.|.|..+..+++.   ...++|+|.++.+++.+++++.           ++.+++.++..
T Consensus        37 ~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~-----------~~~~~~~d~~~  100 (195)
T 3cgg_A           37 ARLIDAMA--PRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFP-----------EARWVVGDLSV  100 (195)
T ss_dssp             HHHHHHHS--CTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTT
T ss_pred             HHHHHHhc--cCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCC-----------CCcEEEccccc
Confidence            45666663  47889999999999999988876   2479999999999999988652           34566777654


Q ss_pred             HHHHHhhhcccccccCccEEEEc
Q 012954          202 IKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      +.  +       ....+|.|+.+
T Consensus       101 ~~--~-------~~~~~D~i~~~  114 (195)
T 3cgg_A          101 DQ--I-------SETDFDLIVSA  114 (195)
T ss_dssp             SC--C-------CCCCEEEEEEC
T ss_pred             CC--C-------CCCceeEEEEC
Confidence            31  1       12468888875

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=95.71  E-value=0.028  Score=55.28  Aligned_cols=74  Identities=15%  Similarity=0.174  Sum_probs=60.9

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      ...++++.+. ..++..++|.-.|.|..+..+++.+|.. +++++|+ +.+++.|+++++..+.     ..+++++..++
T Consensus       178 ~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~  249 (359)
T 1x19_A          178 AIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPEL-DSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDI  249 (359)
T ss_dssp             HHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTC-EEEEEEC-GGGHHHHHHHHHHTTC-----TTTEEEEECCT
T ss_pred             hHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCC-eEEEEec-HHHHHHHHHHHHhcCC-----CCCEEEEeCcc
Confidence            4567888875 4577899999999999999999998864 6999999 9999999998876543     23688888887


Q ss_pred             ch
Q 012954          200 RH  201 (452)
Q Consensus       200 ~~  201 (452)
                      ..
T Consensus       250 ~~  251 (359)
T 1x19_A          250 YK  251 (359)
T ss_dssp             TT
T ss_pred             cc
Confidence            64

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=95.70  E-value=0.033  Score=54.59  Aligned_cols=80  Identities=11%  Similarity=0.115  Sum_probs=59.3

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh--ccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL--LHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~--~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      ++..++|.-.|.|+-+..+++..+. .+|+++|+|+.+++.|++.+...  +..    ..++++++++...   ++... 
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~ar~~~~~~~~~~~----~~rv~v~~~Da~~---~l~~~-  165 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSV-ESVVQCEIDEDVIQVSKKFLPGMAIGYS----SSKLTLHVGDGFE---FMKQN-  165 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGG----CTTEEEEESCHHH---HHHTC-
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHhHHhhcccC----CCcEEEEECcHHH---HHhhC-
Confidence            4579999999999999999876544 57999999999999999987542  110    1378888776543   33322 


Q ss_pred             ccccccCccEEEEcc
Q 012954          211 ENILRSGVDAILMDL  225 (452)
Q Consensus       211 ~~l~~~~VDGILfDL  225 (452)
                          ...+|.|+.|+
T Consensus       166 ----~~~fD~Ii~d~  176 (304)
T 2o07_A          166 ----QDAFDVIITDS  176 (304)
T ss_dssp             ----SSCEEEEEEEC
T ss_pred             ----CCCceEEEECC
Confidence                24699999974

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=95.70  E-value=0.043  Score=53.84  Aligned_cols=74  Identities=16%  Similarity=0.171  Sum_probs=60.7

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      ....++++.+. ..++..++|.-.|.|..+..+++.+|.. +++++|+ +.+++.|++++...+.     ..+++++..+
T Consensus       169 ~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d  240 (374)
T 1qzz_A          169 LAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHL-RGTLVEL-AGPAERARRRFADAGL-----ADRVTVAEGD  240 (374)
T ss_dssp             TTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECC
T ss_pred             hHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCC-EEEEEeC-HHHHHHHHHHHHhcCC-----CCceEEEeCC
Confidence            35678888875 4578899999999999999999998764 6999999 9999999998876543     2368888888


Q ss_pred             cc
Q 012954          199 FR  200 (452)
Q Consensus       199 F~  200 (452)
                      +.
T Consensus       241 ~~  242 (374)
T 1qzz_A          241 FF  242 (374)
T ss_dssp             TT
T ss_pred             CC
Confidence            74

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=95.68  E-value=0.012  Score=55.13  Aligned_cols=88  Identities=15%  Similarity=0.170  Sum_probs=65.6

Q ss_pred             CccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE
Q 012954          115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT  194 (452)
Q Consensus       115 ~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l  194 (452)
                      ...|-+.+.+++.+. ..++..++|.-.|.|..+..+.+  +. ..|+|+|.++.+++.|+++.            ++.+
T Consensus        17 ~~~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~-~~v~gvD~s~~~~~~a~~~~------------~~~~   80 (261)
T 3ege_A           17 VPDIRIVNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QG-LFVYAVEPSIVMRQQAVVHP------------QVEW   80 (261)
T ss_dssp             CCCHHHHHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TT-CEEEEECSCHHHHHSSCCCT------------TEEE
T ss_pred             cccHHHHHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CC-CEEEEEeCCHHHHHHHHhcc------------CCEE
Confidence            355668888888886 45789999999999999998886  33 57999999999988765421            5677


Q ss_pred             EccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          195 FAKNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       195 i~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +++++..+.  +       ....+|.|+....+
T Consensus        81 ~~~d~~~~~--~-------~~~~fD~v~~~~~l  104 (261)
T 3ege_A           81 FTGYAENLA--L-------PDKSVDGVISILAI  104 (261)
T ss_dssp             ECCCTTSCC--S-------CTTCBSEEEEESCG
T ss_pred             EECchhhCC--C-------CCCCEeEEEEcchH
Confidence            788776532  1       12468988887554

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=95.68  E-value=0.027  Score=54.38  Aligned_cols=70  Identities=13%  Similarity=0.016  Sum_probs=52.1

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      |+.+.+++   .++..++|.-.|.|-=+.+++.. .+..+|+|+|+|+.|++.|+++++.++.     .+++++++++-
T Consensus        12 L~~i~~~v---~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl-----~~~I~v~~gD~   81 (244)
T 3gnl_A           12 LEKVASYI---TKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGL-----TEQIDVRKGNG   81 (244)
T ss_dssp             HHHHHTTC---CSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSG
T ss_pred             HHHHHHhC---CCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEecch
Confidence            44444444   36789999999999555555544 4445799999999999999999988754     24688888763

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=95.67  E-value=0.032  Score=55.15  Aligned_cols=80  Identities=15%  Similarity=0.156  Sum_probs=59.6

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh--ccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL--LHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~--~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      +...++|.-.|.|+-+..+++..+. .+|+++|+|+.+++.|++.+..+  +..    ..++++++++...   ++... 
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~Ar~~~~~~~~~~~----~~rv~~~~~D~~~---~l~~~-  178 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESV-EKVTMCEIDEMVIDVAKKFLPGMSCGFS----HPKLDLFCGDGFE---FLKNH-  178 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTC-CEEEEECSCHHHHHHHHHHCTTTSGGGG----CTTEEEECSCHHH---HHHHC-
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHhccccC----CCCEEEEEChHHH---HHHhc-
Confidence            4579999999999999999876544 57999999999999999987643  110    2378888887654   23321 


Q ss_pred             ccccccCccEEEEcc
Q 012954          211 ENILRSGVDAILMDL  225 (452)
Q Consensus       211 ~~l~~~~VDGILfDL  225 (452)
                          ...+|.|+.|.
T Consensus       179 ----~~~fD~Ii~d~  189 (314)
T 2b2c_A          179 ----KNEFDVIITDS  189 (314)
T ss_dssp             ----TTCEEEEEECC
T ss_pred             ----CCCceEEEEcC
Confidence                23699999875

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.65  E-value=0.03  Score=61.26  Aligned_cols=80  Identities=13%  Similarity=-0.001  Sum_probs=60.5

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|+-.|.|+-|..++..  ...+|+++|+++.|++.|+++++..+..    ..++++++++...   ++...   
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~--ga~~V~aVD~s~~al~~a~~N~~~ngl~----~~~v~~i~~D~~~---~l~~~---  606 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLG--GARSTTTVDMSRTYLEWAERNLRLNGLT----GRAHRLIQADCLA---WLREA---  606 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCC----STTEEEEESCHHH---HHHHC---
T ss_pred             CCCcEEEeeechhHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHH---HHHhc---
Confidence            6789999999999999998874  2346999999999999999988765431    1368888887544   33322   


Q ss_pred             ccccCccEEEEccC
Q 012954          213 ILRSGVDAILMDLG  226 (452)
Q Consensus       213 l~~~~VDGILfDLG  226 (452)
                        ...+|.|++|-=
T Consensus       607 --~~~fD~Ii~DPP  618 (703)
T 3v97_A          607 --NEQFDLIFIDPP  618 (703)
T ss_dssp             --CCCEEEEEECCC
T ss_pred             --CCCccEEEECCc
Confidence              136999998753

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=95.65  E-value=0.035  Score=52.38  Aligned_cols=84  Identities=19%  Similarity=0.192  Sum_probs=60.2

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +.-+.++.+.  .++..++|.-.|.|..+.++++. +.  +|+|+|+|+.+++.|+++....+.       .++++++++
T Consensus       109 ~~~~~l~~~~--~~~~~VLDiGcG~G~l~~~la~~-g~--~v~gvDi~~~~v~~a~~n~~~~~~-------~v~~~~~d~  176 (254)
T 2nxc_A          109 LALKALARHL--RPGDKVLDLGTGSGVLAIAAEKL-GG--KALGVDIDPMVLPQAEANAKRNGV-------RPRFLEGSL  176 (254)
T ss_dssp             HHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHT-TC--EEEEEESCGGGHHHHHHHHHHTTC-------CCEEEESCH
T ss_pred             HHHHHHHHhc--CCCCEEEEecCCCcHHHHHHHHh-CC--eEEEEECCHHHHHHHHHHHHHcCC-------cEEEEECCh
Confidence            4445555442  47889999999999888887764 33  699999999999999998776432       266777766


Q ss_pred             chHHHHHhhhcccccccCccEEEEcc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ...   +.       ...+|.|+.+.
T Consensus       177 ~~~---~~-------~~~fD~Vv~n~  192 (254)
T 2nxc_A          177 EAA---LP-------FGPFDLLVANL  192 (254)
T ss_dssp             HHH---GG-------GCCEEEEEEEC
T ss_pred             hhc---Cc-------CCCCCEEEECC
Confidence            542   22       13699999874

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=95.57  E-value=0.041  Score=52.93  Aligned_cols=85  Identities=16%  Similarity=0.145  Sum_probs=65.5

Q ss_pred             hHHHHhhccCC--CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          121 LGEVLDVFSSS--RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       121 l~Evl~~L~~~--~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      ..++++.+. .  .++..++|.-.|.|..+..+++.+|.. +++++|++ .+++.|++++...+.     ..+++++..+
T Consensus       152 ~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~-~~~~~a~~~~~~~~~-----~~~v~~~~~d  223 (335)
T 2r3s_A          152 AQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNA-EIFGVDWA-SVLEVAKENARIQGV-----ASRYHTIAGS  223 (335)
T ss_dssp             HHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTC-EEEEEECH-HHHHHHHHHHHHHTC-----GGGEEEEESC
T ss_pred             HHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCC-eEEEEecH-HHHHHHHHHHHhcCC-----CcceEEEecc
Confidence            456777774 3  467899999999999999999998764 79999999 999999998876543     2368888888


Q ss_pred             cchHHHHHhhhcccccccCccEEEE
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILM  223 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILf  223 (452)
                      +...     ..     ..++|.|++
T Consensus       224 ~~~~-----~~-----~~~~D~v~~  238 (335)
T 2r3s_A          224 AFEV-----DY-----GNDYDLVLL  238 (335)
T ss_dssp             TTTS-----CC-----CSCEEEEEE
T ss_pred             cccC-----CC-----CCCCcEEEE
Confidence            7642     11     124888887

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=95.55  E-value=0.038  Score=52.01  Aligned_cols=98  Identities=14%  Similarity=0.069  Sum_probs=68.8

Q ss_pred             CCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954          114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       114 ~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      ..+...+.+.+++.+. ..++..++|.-.|.|.++..+++..   ..|+|+|+++.+++.|++++......  ....++.
T Consensus        39 ~~~~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~  112 (293)
T 3thr_A           39 RSRTAEYKAWLLGLLR-QHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKE--PAFDKWV  112 (293)
T ss_dssp             SCBCHHHHHHHHHHHH-HTTCCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTS--HHHHTCE
T ss_pred             cchHHHHHHHHHHHhc-ccCCCEEEEecCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHhhhhcccc--cccceee
Confidence            3455666677777775 3577899999999999999998862   26999999999999998876332110  0012567


Q ss_pred             EEccCcchHHHHHhhhcccccccCccEEEE
Q 012954          194 TFAKNFRHIKSVLGQIDENILRSGVDAILM  223 (452)
Q Consensus       194 li~~nF~~i~~~L~~~~~~l~~~~VDGILf  223 (452)
                      +..+++..+..-+.      ....+|.|+.
T Consensus       113 ~~~~d~~~~~~~~~------~~~~fD~V~~  136 (293)
T 3thr_A          113 IEEANWLTLDKDVP------AGDGFDAVIC  136 (293)
T ss_dssp             EEECCGGGHHHHSC------CTTCEEEEEE
T ss_pred             EeecChhhCccccc------cCCCeEEEEE
Confidence            78888877653221      1246998887

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=95.53  E-value=0.036  Score=57.08  Aligned_cols=81  Identities=15%  Similarity=0.101  Sum_probs=61.3

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .|++.+++ +   .++..++|.-.|.|..+..+++.   ...|+|+|.+++|++.|+++++..+.      . +++++++
T Consensus       280 ~l~~~~~~-~---~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl------~-v~~~~~d  345 (425)
T 2jjq_A          280 NLVRKVSE-L---VEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNV------D-AEFEVAS  345 (425)
T ss_dssp             HHHHHHHH-H---CCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTC------C-EEEEECC
T ss_pred             HHHHHhhc-c---CCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCC------c-EEEEECC
Confidence            45666666 3   36789999999999999998875   24799999999999999998865432      2 7788887


Q ss_pred             cchHHHHHhhhcccccccCccEEEEc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ..++   +.        ..+|.|++|
T Consensus       346 ~~~~---~~--------~~fD~Vv~d  360 (425)
T 2jjq_A          346 DREV---SV--------KGFDTVIVD  360 (425)
T ss_dssp             TTTC---CC--------TTCSEEEEC
T ss_pred             hHHc---Cc--------cCCCEEEEc
Confidence            7653   11        158999985

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=95.49  E-value=0.0023  Score=60.02  Aligned_cols=96  Identities=7%  Similarity=0.168  Sum_probs=72.3

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      .++.+-+-+++.+++.+. ..++..++|.-.|.|+.+..+++..   +.|+|+|+|+.+++.|++++..        ..+
T Consensus         9 q~fl~~~~~~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~--------~~~   76 (245)
T 1yub_A            9 QNFLTSEKVLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKL--------NTR   76 (245)
T ss_dssp             CCBCCCTTTHHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTT--------CSE
T ss_pred             CCCCCCHHHHHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhcc--------CCc
Confidence            445567778999999997 4678899999999999999999874   5799999999999888776541        237


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      ++++++++.+++  +..      ...+ .|+.|+-|.
T Consensus        77 v~~~~~D~~~~~--~~~------~~~f-~vv~n~Py~  104 (245)
T 1yub_A           77 VTLIHQDILQFQ--FPN------KQRY-KIVGNIPYH  104 (245)
T ss_dssp             EEECCSCCTTTT--CCC------SSEE-EEEEECCSS
T ss_pred             eEEEECChhhcC--ccc------CCCc-EEEEeCCcc
Confidence            888999887653  110      0235 577776643

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=95.48  E-value=0.022  Score=50.98  Aligned_cols=53  Identities=21%  Similarity=0.145  Sum_probs=43.3

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL  178 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL  178 (452)
                      .+.+++..+   .++..++|.-.|.|..+..+++.   ...|+|+|.++.+++.|++++
T Consensus        33 ~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~   85 (211)
T 3e23_A           33 TLTKFLGEL---PAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL   85 (211)
T ss_dssp             HHHHHHTTS---CTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHhc---CCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc
Confidence            455555555   36789999999999999988876   247999999999999999875

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=95.47  E-value=0.018  Score=56.84  Aligned_cols=85  Identities=24%  Similarity=0.237  Sum_probs=63.2

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ...+++.|. ..+++.++|.-.|.|..+..+++..+.. .|+|+|+++.+++.|++++...+.       ...++.+++.
T Consensus       185 ~~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~-------~~~~~~~d~~  255 (343)
T 2pjd_A          185 SQLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKI-RLTLCDVSAPAVEASRATLAANGV-------EGEVFASNVF  255 (343)
T ss_dssp             HHHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTC-BCEEEESBHHHHHHHHHHHHHTTC-------CCEEEECSTT
T ss_pred             HHHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHhCC-------CCEEEEcccc
Confidence            456677774 3467899999999999999999887654 699999999999999998876532       2344555553


Q ss_pred             hHHHHHhhhcccccccCccEEEEcc
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ..   .        ...+|.|+.+.
T Consensus       256 ~~---~--------~~~fD~Iv~~~  269 (343)
T 2pjd_A          256 SE---V--------KGRFDMIISNP  269 (343)
T ss_dssp             TT---C--------CSCEEEEEECC
T ss_pred             cc---c--------cCCeeEEEECC
Confidence            21   1        13689998874

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=95.43  E-value=0.0082  Score=59.83  Aligned_cols=85  Identities=16%  Similarity=0.164  Sum_probs=63.6

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      +.+.+.+++.+. ..+++.++|..+|.|+-+.++++.++....++|+|+|+.|++.|        .       ++.++++
T Consensus        25 ~~l~~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------~-------~~~~~~~   88 (421)
T 2ih2_A           25 PEVVDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------P-------WAEGILA   88 (421)
T ss_dssp             HHHHHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------T-------TEEEEES
T ss_pred             HHHHHHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------C-------CCcEEeC
Confidence            346777778776 34567999999999999999998864445799999999999766        1       4677888


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      ++....          ....+|.|+.|-=|.
T Consensus        89 D~~~~~----------~~~~fD~Ii~NPPy~  109 (421)
T 2ih2_A           89 DFLLWE----------PGEAFDLILGNPPYG  109 (421)
T ss_dssp             CGGGCC----------CSSCEEEEEECCCCC
T ss_pred             ChhhcC----------ccCCCCEEEECcCcc
Confidence            875421          123699999985554

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=95.43  E-value=0.031  Score=55.89  Aligned_cols=77  Identities=14%  Similarity=0.122  Sum_probs=59.5

Q ss_pred             CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954          135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL  214 (452)
Q Consensus       135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~  214 (452)
                      ..++|.=+|.|+-+..+++.+|.. +|+++|+|+.+++.|++.+....      ..|+++++++...   ++....    
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~-~v~~VEidp~vi~~Ar~~~~~~~------~~rv~v~~~Da~~---~l~~~~----  156 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQS-RNTVVELDAELARLSREWFDIPR------APRVKIRVDDARM---VAESFT----  156 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTC-EEEEEESCHHHHHHHHHHSCCCC------TTTEEEEESCHHH---HHHTCC----
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCc-EEEEEECCHHHHHHHHHhccccC------CCceEEEECcHHH---HHhhcc----
Confidence            389999999999999999888875 79999999999999998774321      2478888877653   343321    


Q ss_pred             ccCccEEEEcc
Q 012954          215 RSGVDAILMDL  225 (452)
Q Consensus       215 ~~~VDGILfDL  225 (452)
                      ...+|.|+.|+
T Consensus       157 ~~~fDvIi~D~  167 (317)
T 3gjy_A          157 PASRDVIIRDV  167 (317)
T ss_dssp             TTCEEEEEECC
T ss_pred             CCCCCEEEECC
Confidence            24699999984

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=95.40  E-value=0.056  Score=53.68  Aligned_cols=73  Identities=19%  Similarity=0.198  Sum_probs=59.5

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +..++++.+. ..+...++|.-.|.|..+..+++.+|.. +++++|+ +.+++.|++++...+.     ..+++++..+|
T Consensus       190 ~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~l-----~~~v~~~~~d~  261 (369)
T 3gwz_A          190 EAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGL-RGTLLER-PPVAEEARELLTGRGL-----ADRCEILPGDF  261 (369)
T ss_dssp             HHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCT
T ss_pred             hHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCC-eEEEEcC-HHHHHHHHHhhhhcCc-----CCceEEeccCC
Confidence            3566777775 4567899999999999999999998875 6899999 9999999998876543     23788888887


Q ss_pred             c
Q 012954          200 R  200 (452)
Q Consensus       200 ~  200 (452)
                      .
T Consensus       262 ~  262 (369)
T 3gwz_A          262 F  262 (369)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=95.39  E-value=0.034  Score=47.89  Aligned_cols=77  Identities=18%  Similarity=0.127  Sum_probs=57.0

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      .++++.+. ..++..++|.-.|.|..+..+++..   ..++|+|.++.+++.++++.           .++.+++.+   
T Consensus         7 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~-----------~~v~~~~~d---   68 (170)
T 3i9f_A            7 EEYLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKF-----------DSVITLSDP---   68 (170)
T ss_dssp             TTTHHHHH-SSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHC-----------TTSEEESSG---
T ss_pred             HHHHHhcC-cCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhC-----------CCcEEEeCC---
Confidence            34566665 3577899999999999999998875   26999999999999998861           146667766   


Q ss_pred             HHHHHhhhcccccccCccEEEEcc
Q 012954          202 IKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       202 i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                          +. .    ....+|.|+...
T Consensus        69 ----~~-~----~~~~~D~v~~~~   83 (170)
T 3i9f_A           69 ----KE-I----PDNSVDFILFAN   83 (170)
T ss_dssp             ----GG-S----CTTCEEEEEEES
T ss_pred             ----CC-C----CCCceEEEEEcc
Confidence                11 1    124699998764

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=95.35  E-value=0.044  Score=54.31  Aligned_cols=77  Identities=14%  Similarity=0.076  Sum_probs=60.1

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++..++|.-.|.|..+..+++. +. .+|+|+|.+ .+++.|+++++..+.     ..++++++++..++.  +     
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~-g~-~~v~gvD~s-~~l~~a~~~~~~~~~-----~~~v~~~~~d~~~~~--~-----  129 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKA-GA-RKVIGIECS-SISDYAVKIVKANKL-----DHVVTIIKGKVEEVE--L-----  129 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHT-TC-SEEEEEECS-THHHHHHHHHHHTTC-----TTTEEEEESCTTTCC--C-----
T ss_pred             CCCCEEEEEeccchHHHHHHHHC-CC-CEEEEECcH-HHHHHHHHHHHHcCC-----CCcEEEEECcHHHcc--C-----
Confidence            36789999999999988888876 43 579999999 499999998876543     236899999887651  1     


Q ss_pred             cccccCccEEEEcc
Q 012954          212 NILRSGVDAILMDL  225 (452)
Q Consensus       212 ~l~~~~VDGILfDL  225 (452)
                        ....+|.|+.+.
T Consensus       130 --~~~~fD~Iis~~  141 (349)
T 3q7e_A          130 --PVEKVDIIISEW  141 (349)
T ss_dssp             --SSSCEEEEEECC
T ss_pred             --CCCceEEEEEcc
Confidence              124799999875

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=95.29  E-value=0.061  Score=53.26  Aligned_cols=86  Identities=19%  Similarity=0.252  Sum_probs=63.1

Q ss_pred             HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH
Q 012954          123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI  202 (452)
Q Consensus       123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i  202 (452)
                      +++..+.. ...+.++|.-.|.|..+..+++++|.. +++++|. +.+++.|++++...+.     ..+++++.++|...
T Consensus       170 ~~l~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~  241 (363)
T 3dp7_A          170 KALEIVFS-HHPKRLLDIGGNTGKWATQCVQYNKEV-EVTIVDL-PQQLEMMRKQTAGLSG-----SERIHGHGANLLDR  241 (363)
T ss_dssp             HHHHHHGG-GCCSEEEEESCTTCHHHHHHHHHSTTC-EEEEEEC-HHHHHHHHHHHTTCTT-----GGGEEEEECCCCSS
T ss_pred             HHHHHhcc-cCCCEEEEeCCCcCHHHHHHHHhCCCC-EEEEEeC-HHHHHHHHHHHHhcCc-----ccceEEEEcccccc
Confidence            44544432 356899999999999999999999875 6999999 9999999998876542     24788888887541


Q ss_pred             HHHHhhhcccccccCccEEEEc
Q 012954          203 KSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       203 ~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      .     .  .+ ...+|.|++-
T Consensus       242 ~-----~--~~-p~~~D~v~~~  255 (363)
T 3dp7_A          242 D-----V--PF-PTGFDAVWMS  255 (363)
T ss_dssp             S-----C--CC-CCCCSEEEEE
T ss_pred             C-----C--CC-CCCcCEEEEe
Confidence            0     0  01 1368888763

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=95.25  E-value=0.044  Score=55.00  Aligned_cols=86  Identities=15%  Similarity=0.099  Sum_probs=64.8

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      .+.+++.+. ..++..++|.-.|.|..+..+++. +. .+|+|+|.+ .+++.|+++++..+.     ..++++++++..
T Consensus        52 ~~~i~~~~~-~~~~~~VLDlGcGtG~ls~~la~~-g~-~~V~gvD~s-~~~~~a~~~~~~~~~-----~~~v~~~~~d~~  122 (376)
T 3r0q_C           52 FNAVFQNKH-HFEGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMADHARALVKANNL-----DHIVEVIEGSVE  122 (376)
T ss_dssp             HHHHHTTTT-TTTTCEEEEESCTTTHHHHHHHHT-TC-SEEEEEESS-TTHHHHHHHHHHTTC-----TTTEEEEESCGG
T ss_pred             HHHHHhccc-cCCCCEEEEeccCcCHHHHHHHhc-CC-CEEEEEccH-HHHHHHHHHHHHcCC-----CCeEEEEECchh
Confidence            344444443 357889999999999999888876 33 479999999 999999998877643     246899999887


Q ss_pred             hHHHHHhhhcccccccCccEEEEcc
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++.  +        ...+|.|+.++
T Consensus       123 ~~~--~--------~~~~D~Iv~~~  137 (376)
T 3r0q_C          123 DIS--L--------PEKVDVIISEW  137 (376)
T ss_dssp             GCC--C--------SSCEEEEEECC
T ss_pred             hcC--c--------CCcceEEEEcC
Confidence            642  1        14799999976

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=95.16  E-value=0.03  Score=49.34  Aligned_cols=66  Identities=9%  Similarity=0.142  Sum_probs=50.4

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      +++.++|.-.|.|..+..+++..    .|+|+|+++.+++.        .       .+++++++++.+   .+.     
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--------~-------~~~~~~~~d~~~---~~~-----   75 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--------H-------RGGNLVRADLLC---SIN-----   75 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--------C-------SSSCEEECSTTT---TBC-----
T ss_pred             CCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--------c-------cCCeEEECChhh---hcc-----
Confidence            67899999999998888888765    69999999999986        1       145677777654   111     


Q ss_pred             ccccCccEEEEccCC
Q 012954          213 ILRSGVDAILMDLGM  227 (452)
Q Consensus       213 l~~~~VDGILfDLGv  227 (452)
                        ...+|.|+.|..+
T Consensus        76 --~~~fD~i~~n~~~   88 (170)
T 3q87_B           76 --QESVDVVVFNPPY   88 (170)
T ss_dssp             --GGGCSEEEECCCC
T ss_pred             --cCCCCEEEECCCC
Confidence              1369999998655

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=95.03  E-value=0.074  Score=51.94  Aligned_cols=74  Identities=16%  Similarity=0.229  Sum_probs=59.7

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .....+++.+. ..++..++|.-.|.|..+..+++.++.. .++++|+ +.+++.|++++...+.     ..+++++..+
T Consensus       170 ~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d  241 (360)
T 1tw3_A          170 VAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGL-----SDRVDVVEGD  241 (360)
T ss_dssp             TTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTC-----TTTEEEEECC
T ss_pred             HhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCC-EEEEecC-HHHHHHHHHHHHhcCC-----CCceEEEeCC
Confidence            35677788875 4577899999999999999999998764 6899999 9999999998876543     2368888887


Q ss_pred             cc
Q 012954          199 FR  200 (452)
Q Consensus       199 F~  200 (452)
                      +.
T Consensus       242 ~~  243 (360)
T 1tw3_A          242 FF  243 (360)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=95.01  E-value=0.032  Score=55.10  Aligned_cols=89  Identities=19%  Similarity=0.168  Sum_probs=59.5

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE-EccCc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT-FAKNF  199 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l-i~~nF  199 (452)
                      |.++++.+....++..++|.-+|.|+.|..+++. + .++|+|+|+++.+++.+.+.   .        .++.. -..|+
T Consensus        73 l~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-g-a~~V~aVDvs~~mL~~a~r~---~--------~rv~~~~~~ni  139 (291)
T 3hp7_A           73 LEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-G-AKLVYAVDVGTNQLVWKLRQ---D--------DRVRSMEQYNF  139 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSSSCSCHHHHT---C--------TTEEEECSCCG
T ss_pred             HHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHh---C--------cccceecccCc
Confidence            6788888864335679999999999999998876 3 35799999999999875331   1        13322 23566


Q ss_pred             chHHHHHhhhcccccccCccEEEEccCCC
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      .++..  ..    +....+|.|++|+-+.
T Consensus       140 ~~l~~--~~----l~~~~fD~v~~d~sf~  162 (291)
T 3hp7_A          140 RYAEP--VD----FTEGLPSFASIDVSFI  162 (291)
T ss_dssp             GGCCG--GG----CTTCCCSEEEECCSSS
T ss_pred             eecch--hh----CCCCCCCEEEEEeeHh
Confidence            55421  11    1112389999987543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=95.01  E-value=0.042  Score=53.31  Aligned_cols=70  Identities=17%  Similarity=0.195  Sum_probs=54.7

Q ss_pred             HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ++++.+. ..+...++|.-.|.|..+..+++.+|.. +++++|+ +.+++.|++++...+.     ..+++++..+|.
T Consensus       160 ~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~  229 (332)
T 3i53_A          160 GIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDL-SGTVLDL-QGPASAAHRRFLDTGL-----SGRAQVVVGSFF  229 (332)
T ss_dssp             TGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTT
T ss_pred             HHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCC-eEEEecC-HHHHHHHHHhhhhcCc-----CcCeEEecCCCC
Confidence            4444443 3356899999999999999999999875 6899999 9999999998876543     236777777763

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=95.01  E-value=0.061  Score=52.48  Aligned_cols=47  Identities=17%  Similarity=0.297  Sum_probs=39.5

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      ++..++|.-+|.|+++..++...  ...|+|+|+++.+|+.|+++....
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~GiD~S~~~l~~A~~~~~~~   94 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE--IALLVATDPDADAIARGNERYNKL   94 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHhc
Confidence            47899999999999999877642  347999999999999999887543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=95.00  E-value=0.094  Score=50.12  Aligned_cols=57  Identities=14%  Similarity=0.062  Sum_probs=44.6

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeC-CHHHHHHHHHHH
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDV-DPSALAKARAHL  178 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDr-D~~Ai~~Ak~rL  178 (452)
                      +|++.+++.+. ..++..++|.-.|.|..+..++.. +. ++|+|+|+ ++.+++.|+++.
T Consensus        66 ~l~~~l~~~~~-~~~~~~vLDlG~G~G~~~~~~a~~-~~-~~v~~~D~s~~~~~~~a~~n~  123 (281)
T 3bzb_A           66 ALADTLCWQPE-LIAGKTVCELGAGAGLVSIVAFLA-GA-DQVVATDYPDPEILNSLESNI  123 (281)
T ss_dssp             HHHHHHHHCGG-GTTTCEEEETTCTTSHHHHHHHHT-TC-SEEEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHHhcch-hcCCCeEEEecccccHHHHHHHHc-CC-CEEEEEeCCCHHHHHHHHHHH
Confidence            45666666554 246789999999999888776654 43 47999999 999999999887

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=94.97  E-value=0.058  Score=51.26  Aligned_cols=80  Identities=11%  Similarity=0.005  Sum_probs=53.5

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh-h------ccCCC----CCCceEEEEccCcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS-L------LHGQA----HPHLKTHTFAKNFR  200 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~-~------~~~~~----~~~~r~~li~~nF~  200 (452)
                      .+++.++|.=+|.|.++..+.+. +  ..|+|+|..+.|++.|+++... +      ..+..    ....+++++++++.
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~-G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~  143 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR-G--HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF  143 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT-T--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC-C--CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence            46789999999999888887765 3  3699999999999999876531 0      00000    00136888888887


Q ss_pred             hHHHHHhhhcccccccCccEEE
Q 012954          201 HIKSVLGQIDENILRSGVDAIL  222 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGIL  222 (452)
                      ++..   . .    ...+|+|+
T Consensus       144 ~l~~---~-~----~~~FD~V~  157 (252)
T 2gb4_A          144 DLPR---A-N----IGKFDRIW  157 (252)
T ss_dssp             TGGG---G-C----CCCEEEEE
T ss_pred             cCCc---c-c----CCCEEEEE
Confidence            6531   0 0    13688776

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=94.95  E-value=0.033  Score=51.72  Aligned_cols=43  Identities=21%  Similarity=0.267  Sum_probs=37.7

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL  178 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL  178 (452)
                      +++.++|.-+|.|..+..+++..   ..|+|+|.++.+++.|++++
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~   92 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRN   92 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHC
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC
Confidence            56899999999999999888763   36999999999999998864

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.92  E-value=0.045  Score=53.03  Aligned_cols=64  Identities=17%  Similarity=0.233  Sum_probs=50.3

Q ss_pred             CCCcccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          113 QSSHIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       113 ~~~H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      |..-.|+ |+..+|+.+.  .++++++|.-+|.|--+.+.++ .+  .+++|+|+|+++++.|+++++..
T Consensus       216 h~~~~p~~l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~-~g--~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          216 HPAPFPLELAERLVRMFS--FVGDVVLDPFAGTGTTLIAAAR-WG--RRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             --CCSCHHHHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHH-TT--CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHH-cC--CeEEEEeCCHHHHHHHHHHHHHh
Confidence            3444665 8888888885  5899999999999966655554 43  47999999999999999998775

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=94.88  E-value=0.076  Score=52.51  Aligned_cols=85  Identities=13%  Similarity=0.076  Sum_probs=63.6

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      .+.+++.+. ..++..++|.-.|.|..+..+++. +. .+|+|+|.++ .++.|+++++..+.     ..+++++++++.
T Consensus        39 ~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~~vD~s~-~~~~a~~~~~~~~l-----~~~v~~~~~d~~  109 (348)
T 2y1w_A           39 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GA-RKIYAVEAST-MAQHAEVLVKSNNL-----TDRIVVIPGKVE  109 (348)
T ss_dssp             HHHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEECST-HHHHHHHHHHHTTC-----TTTEEEEESCTT
T ss_pred             HHHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CC-CEEEEECCHH-HHHHHHHHHHHcCC-----CCcEEEEEcchh
Confidence            456677775 357889999999999999888865 33 4799999997 66888888876543     237888998887


Q ss_pred             hHHHHHhhhcccccccCccEEEEc
Q 012954          201 HIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ++.     .     ...+|.|+.+
T Consensus       110 ~~~-----~-----~~~~D~Ivs~  123 (348)
T 2y1w_A          110 EVS-----L-----PEQVDIIISE  123 (348)
T ss_dssp             TCC-----C-----SSCEEEEEEC
T ss_pred             hCC-----C-----CCceeEEEEe
Confidence            641     1     1369999986

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=94.76  E-value=0.041  Score=51.21  Aligned_cols=71  Identities=21%  Similarity=0.253  Sum_probs=53.7

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++..++|.-.|.|..+..+++.++. ..|+|+|.++.+++.|+++..           ++.++..++.++.        
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~--------  143 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPE-ITTFGLDVSKVAIKAAAKRYP-----------QVTFCVASSHRLP--------  143 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTT-SEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTSCS--------
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhCC-----------CcEEEEcchhhCC--------
Confidence            47789999999999999999887754 479999999999999987542           3456667665431        


Q ss_pred             cccccCccEEEE
Q 012954          212 NILRSGVDAILM  223 (452)
Q Consensus       212 ~l~~~~VDGILf  223 (452)
                       +....+|.|+.
T Consensus       144 -~~~~~fD~v~~  154 (269)
T 1p91_A          144 -FSDTSMDAIIR  154 (269)
T ss_dssp             -BCTTCEEEEEE
T ss_pred             -CCCCceeEEEE
Confidence             11236898885

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=94.72  E-value=0.078  Score=51.99  Aligned_cols=76  Identities=18%  Similarity=0.131  Sum_probs=57.9

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++..++|.-.|.|.-+..+++. +. .+|+|+|.+ .+++.|+++++..+.     ..++++++++..++.     .  
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~-g~-~~v~~vD~s-~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~-----~--  101 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKH-GA-KHVIGVDMS-SIIEMAKELVELNGF-----SDKITLLRGKLEDVH-----L--  101 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT-CC-SEEEEEESS-THHHHHHHHHHHTTC-----TTTEEEEESCTTTSC-----C--
T ss_pred             cCCCEEEEecCccHHHHHHHHHC-CC-CEEEEEChH-HHHHHHHHHHHHcCC-----CCCEEEEECchhhcc-----C--
Confidence            36789999999999888877765 43 479999999 589999988876543     236888998877641     1  


Q ss_pred             cccccCccEEEEc
Q 012954          212 NILRSGVDAILMD  224 (452)
Q Consensus       212 ~l~~~~VDGILfD  224 (452)
                        ....+|.|+.+
T Consensus       102 --~~~~~D~Ivs~  112 (328)
T 1g6q_1          102 --PFPKVDIIISE  112 (328)
T ss_dssp             --SSSCEEEEEEC
T ss_pred             --CCCcccEEEEe
Confidence              12469999987

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=94.70  E-value=0.072  Score=47.18  Aligned_cols=70  Identities=9%  Similarity=0.005  Sum_probs=54.2

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      .++.++|.-.|.|..+..+++. +  ..++|+|.++.+++.|+++..           ++.++++++.++.  +      
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~-~--~~v~gvD~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~--~------   98 (203)
T 3h2b_A           41 VDGVILDVGSGTGRWTGHLASL-G--HQIEGLEPATRLVELARQTHP-----------SVTFHHGTITDLS--D------   98 (203)
T ss_dssp             CCSCEEEETCTTCHHHHHHHHT-T--CCEEEECCCHHHHHHHHHHCT-----------TSEEECCCGGGGG--G------
T ss_pred             CCCeEEEecCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhCC-----------CCeEEeCcccccc--c------
Confidence            4789999999999999988876 2  359999999999999987631           4677888887642  1      


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                       ....+|.|+...
T Consensus        99 -~~~~fD~v~~~~  110 (203)
T 3h2b_A           99 -SPKRWAGLLAWY  110 (203)
T ss_dssp             -SCCCEEEEEEES
T ss_pred             -CCCCeEEEEehh
Confidence             124699998864

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=94.60  E-value=0.069  Score=55.82  Aligned_cols=86  Identities=12%  Similarity=0.062  Sum_probs=63.8

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +.+++++.+. ..++..++|.-.|.|..+..+++ .+. .+|+|+|.++ +++.|+++++..+.     ..+++++++++
T Consensus       146 ~~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~-~~V~gvD~s~-~l~~A~~~~~~~gl-----~~~v~~~~~d~  216 (480)
T 3b3j_A          146 YQRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGA-RKIYAVEAST-MAQHAEVLVKSNNL-----TDRIVVIPGKV  216 (480)
T ss_dssp             HHHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTC-SEEEEEECHH-HHHHHHHHHHHTTC-----TTTEEEEESCT
T ss_pred             HHHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCC-CEEEEEEcHH-HHHHHHHHHHHcCC-----CCcEEEEECch
Confidence            3455777775 34778999999999998887776 444 4799999998 88999988876543     23788999888


Q ss_pred             chHHHHHhhhcccccccCccEEEEc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      .++.     .     ...+|.|+.+
T Consensus       217 ~~~~-----~-----~~~fD~Ivs~  231 (480)
T 3b3j_A          217 EEVS-----L-----PEQVDIIISE  231 (480)
T ss_dssp             TTCC-----C-----SSCEEEEECC
T ss_pred             hhCc-----c-----CCCeEEEEEe
Confidence            6531     1     1368888875

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=94.52  E-value=0.085  Score=48.29  Aligned_cols=55  Identities=11%  Similarity=0.097  Sum_probs=42.2

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAH  177 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~r  177 (452)
                      +.+.....+....++..++|.-+|.|..+..+.+. +  ..|+|+|.++.+++.|+++
T Consensus        28 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~gvD~s~~~~~~a~~~   82 (240)
T 3dli_A           28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE-G--IESIGVDINEDMIKFCEGK   82 (240)
T ss_dssp             HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH-T--CCEEEECSCHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC-C--CcEEEEECCHHHHHHHHhh
Confidence            34444445543346789999999999999888876 2  2489999999999998764

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=94.37  E-value=0.059  Score=55.19  Aligned_cols=94  Identities=17%  Similarity=0.160  Sum_probs=64.6

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhC-------------CCCCEEEEEeCCHHHHHHHHHHHhhhccCCC
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAH-------------PELKLHIGVDVDPSALAKARAHLNSLLHGQA  186 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~-------------p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~  186 (452)
                      +++-+++.+. +.++..++|.++|.||....+++.+             +. ..++|+|+|+.+++.|+.++.-.+..  
T Consensus       159 v~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~-~~i~G~Ei~~~~~~lA~~nl~l~g~~--  234 (445)
T 2okc_A          159 LIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRD-KALHGVDNTPLVVTLASMNLYLHGIG--  234 (445)
T ss_dssp             HHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHH-TTEEEEESCHHHHHHHHHHHHHTTCC--
T ss_pred             HHHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcC-eEEEEEeCCHHHHHHHHHHHHHhCCC--
Confidence            4555666665 4677899999999999998888764             22 35999999999999999877544321  


Q ss_pred             CCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          187 HPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       187 ~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                        ..++.++++++-..      ..    ...+|.|+.|-=|+.
T Consensus       235 --~~~~~i~~gD~l~~------~~----~~~fD~Iv~NPPf~~  265 (445)
T 2okc_A          235 --TDRSPIVCEDSLEK------EP----STLVDVILANPPFGT  265 (445)
T ss_dssp             --SSCCSEEECCTTTS------CC----SSCEEEEEECCCSSC
T ss_pred             --cCCCCEeeCCCCCC------cc----cCCcCEEEECCCCCC
Confidence              01345666665321      11    136999999965554

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=94.37  E-value=0.059  Score=52.10  Aligned_cols=73  Identities=26%  Similarity=0.338  Sum_probs=58.2

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      ...++++.+. ..+ ..++|.-.|.|..+..+++.+|.. +++++|+ +.+++.|++++...+.     ..+++++..++
T Consensus       156 ~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~  226 (334)
T 2ip2_A          156 AFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSA-RGVMLDR-EGSLGVARDNLSSLLA-----GERVSLVGGDM  226 (334)
T ss_dssp             HHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTC-EEEEEEC-TTCTHHHHHHTHHHHH-----TTSEEEEESCT
T ss_pred             HHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCC-EEEEeCc-HHHHHHHHHHHhhcCC-----CCcEEEecCCC
Confidence            3567777764 335 899999999999999999999874 7999999 9999999998766543     13788888887


Q ss_pred             ch
Q 012954          200 RH  201 (452)
Q Consensus       200 ~~  201 (452)
                      ..
T Consensus       227 ~~  228 (334)
T 2ip2_A          227 LQ  228 (334)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=94.20  E-value=0.097  Score=49.71  Aligned_cols=64  Identities=19%  Similarity=0.361  Sum_probs=47.8

Q ss_pred             CCCcccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          113 QSSHIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       113 ~~~H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      +..-.|+ |+..+|+...  .++++++|.-+|.| -+..-..+++  .++||+|+++.+++.|+++++..
T Consensus       193 ~~~~~p~~l~~~~i~~~~--~~~~~vlD~f~GsG-tt~~~a~~~g--r~~ig~e~~~~~~~~~~~r~~~~  257 (260)
T 1g60_A          193 HITPKPRDLIERIIRASS--NPNDLVLDCFMGSG-TTAIVAKKLG--RNFIGCDMNAEYVNQANFVLNQL  257 (260)
T ss_dssp             --CCCCHHHHHHHHHHHC--CTTCEEEESSCTTC-HHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHhC--CCCCEEEECCCCCC-HHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHhc
Confidence            4445665 8888898885  58999999999999 3333333353  57999999999999999998753

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=94.18  E-value=0.093  Score=47.88  Aligned_cols=83  Identities=13%  Similarity=0.083  Sum_probs=60.9

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      ...++.+++..+.  .++..++|.-.|.|.++..+++.   ...|+|+|.++.+++.|+++.           .++++++
T Consensus        34 ~~~l~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~   97 (226)
T 3m33_A           34 PELTFDLWLSRLL--TPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARANA-----------PHADVYE   97 (226)
T ss_dssp             TTHHHHHHHHHHC--CTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHC-----------TTSEEEE
T ss_pred             HHHHHHHHHHhcC--CCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhC-----------CCceEEE
Confidence            3456777777654  47889999999999999998887   247999999999999998861           1466777


Q ss_pred             cCcc-hHHHHHhhhccccc-ccCccEEEEc
Q 012954          197 KNFR-HIKSVLGQIDENIL-RSGVDAILMD  224 (452)
Q Consensus       197 ~nF~-~i~~~L~~~~~~l~-~~~VDGILfD  224 (452)
                      .+.. .+.         +. ...+|.|+..
T Consensus        98 ~d~~~~~~---------~~~~~~fD~v~~~  118 (226)
T 3m33_A           98 WNGKGELP---------AGLGAPFGLIVSR  118 (226)
T ss_dssp             CCSCSSCC---------TTCCCCEEEEEEE
T ss_pred             cchhhccC---------CcCCCCEEEEEeC
Confidence            7763 221         01 2368888764

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=93.98  E-value=0.15  Score=54.09  Aligned_cols=105  Identities=11%  Similarity=0.040  Sum_probs=66.2

Q ss_pred             ccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCC-----------------CCEEEEEeCCHHHHHHHHHHH
Q 012954          117 IPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPE-----------------LKLHIGVDVDPSALAKARAHL  178 (452)
Q Consensus       117 ~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~-----------------~g~VigfDrD~~Ai~~Ak~rL  178 (452)
                      +|- +++-+++.+. +.++..++|.++|.||-...+++.+..                 ...++|+|+|+.+++.|+.++
T Consensus       153 TP~~iv~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl  231 (541)
T 2ar0_A          153 TPRPLIKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC  231 (541)
T ss_dssp             CCHHHHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHH
Confidence            344 3444566665 467889999999999988877765321                 125999999999999999877


Q ss_pred             hhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCccC
Q 012954          179 NSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQ  231 (452)
Q Consensus       179 ~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~Q  231 (452)
                      .-.+... ....++.+++++.-..+.  ..      ...+|.||.|-=|+...
T Consensus       232 ~l~gi~~-~~~~~~~I~~gDtL~~~~--~~------~~~fD~Vv~NPPf~~~~  275 (541)
T 2ar0_A          232 LLHDIEG-NLDHGGAIRLGNTLGSDG--EN------LPKAHIVATNPPFGSAA  275 (541)
T ss_dssp             HTTTCCC-BGGGTBSEEESCTTSHHH--HT------SCCEEEEEECCCCTTCS
T ss_pred             HHhCCCc-cccccCCeEeCCCccccc--cc------ccCCeEEEECCCccccc
Confidence            5433210 000014566666432211  01      23699999996665543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=93.77  E-value=0.072  Score=47.08  Aligned_cols=48  Identities=15%  Similarity=0.099  Sum_probs=38.0

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCC-CCEEEEEeCCH
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPE-LKLHIGVDVDP  168 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~-~g~VigfDrD~  168 (452)
                      +.|+++.+....++..++|.-.|.|+.|..+++.+++ .++|+|+|+++
T Consensus        10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~   58 (201)
T 2plw_A           10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI   58 (201)
T ss_dssp             HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence            3445555432357789999999999999999999874 46899999997

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=93.58  E-value=0.16  Score=47.55  Aligned_cols=84  Identities=15%  Similarity=0.228  Sum_probs=61.5

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      .+-+.+++++.+. ..++..++|.-.|.|..+..+++  +. ..|+|+|.++.+++.|++++.           ++.++.
T Consensus        42 ~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~-~~v~gvD~s~~~~~~a~~~~~-----------~~~~~~  106 (279)
T 3ccf_A           42 VWQYGEDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SG-AEVLGTDNAATMIEKARQNYP-----------HLHFDV  106 (279)
T ss_dssp             CSSSCCHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TT-CEEEEEESCHHHHHHHHHHCT-----------TSCEEE
T ss_pred             HHHHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CC-CeEEEEECCHHHHHHHHhhCC-----------CCEEEE
Confidence            3557788888886 46888999999999999988887  33 579999999999999987641           344555


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      .+...+.     .     ...+|.|+...
T Consensus       107 ~d~~~~~-----~-----~~~fD~v~~~~  125 (279)
T 3ccf_A          107 ADARNFR-----V-----DKPLDAVFSNA  125 (279)
T ss_dssp             CCTTTCC-----C-----SSCEEEEEEES
T ss_pred             CChhhCC-----c-----CCCcCEEEEcc
Confidence            6555431     0     13577777653

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.54  E-value=0.098  Score=51.56  Aligned_cols=64  Identities=11%  Similarity=0.216  Sum_probs=50.4

Q ss_pred             CCCCcccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          112 QQSSHIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       112 ~~~~H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      .+....|+ |+..+|+...  .+|++++|.-+|.|  |+++... ++  .+.||+|+++.+.+.|++||...
T Consensus       232 ~~~~~kp~~l~~~~i~~~~--~~~~~VlDpF~GsG--tt~~aa~~~g--r~~ig~e~~~~~~~~~~~r~~~~  297 (323)
T 1boo_A          232 AHPARFPAKLPEFFIRMLT--EPDDLVVDIFGGSN--TTGLVAERES--RKWISFEMKPEYVAASAFRFLDN  297 (323)
T ss_dssp             CCSSCCCTHHHHHHHHHHC--CTTCEEEETTCTTC--HHHHHHHHTT--CEEEEEESCHHHHHHHHGGGSCS
T ss_pred             CCCCcCCHHHHHHHHHHhC--CCCCEEEECCCCCC--HHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHhc
Confidence            35556776 8888888875  58999999999999  4444443 53  57899999999999999998765

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=93.44  E-value=0.3  Score=45.71  Aligned_cols=59  Identities=14%  Similarity=0.121  Sum_probs=44.9

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      +...+++.  |.| +|...|.+.+ .++|+++|.|++-.+.|++.++..+...   ..+++++++.
T Consensus        30 ~a~~VLEi--GtG-ySTl~lA~~~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~---~~~I~~~~gd   88 (202)
T 3cvo_A           30 EAEVILEY--GSG-GSTVVAAELP-GKHVTSVESDRAWARMMKAWLAANPPAE---GTEVNIVWTD   88 (202)
T ss_dssp             HCSEEEEE--SCS-HHHHHHHTST-TCEEEEEESCHHHHHHHHHHHHHSCCCT---TCEEEEEECC
T ss_pred             CCCEEEEE--Cch-HHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC---CCceEEEEeC
Confidence            45678774  555 7888888865 5789999999999999999998765300   2378888776

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=93.39  E-value=0.28  Score=46.25  Aligned_cols=59  Identities=14%  Similarity=0.141  Sum_probs=47.8

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLH  183 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~  183 (452)
                      -.++.+++.   +.+.++|.-+|.|-=+..++...|.. .|+|+|+|+.+++.|++++...+.
T Consensus        40 Y~~~~~~l~---~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~   98 (200)
T 3fzg_A           40 YTYVFGNIK---HVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKT   98 (200)
T ss_dssp             HHHHHHHSC---CCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhhcC---CCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCC
Confidence            445556663   56799999999997777777767776 899999999999999999887653

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=93.37  E-value=0.15  Score=46.03  Aligned_cols=43  Identities=21%  Similarity=0.356  Sum_probs=38.5

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL  178 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL  178 (452)
                      ++..++|.-.|.|.++..+++..+   .++|+|.++.+++.|++++
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~   82 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL   82 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC
T ss_pred             CCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC
Confidence            678999999999999999998854   6999999999999998864

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=93.36  E-value=0.087  Score=50.36  Aligned_cols=68  Identities=15%  Similarity=0.153  Sum_probs=50.8

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      .++.++|+=+|.|..+..+.+..   ..|+|+|.++.+++.|++            ..++.++++++.++.         
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~------------~~~v~~~~~~~e~~~---------   94 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALR------------HPRVTYAVAPAEDTG---------   94 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCC------------CTTEEEEECCTTCCC---------
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhh------------cCCceeehhhhhhhc---------
Confidence            45789999999998888887653   469999999999987643            126778888876542         


Q ss_pred             ccccCccEEEEc
Q 012954          213 ILRSGVDAILMD  224 (452)
Q Consensus       213 l~~~~VDGILfD  224 (452)
                      +..+.+|.|+.-
T Consensus        95 ~~~~sfD~v~~~  106 (257)
T 4hg2_A           95 LPPASVDVAIAA  106 (257)
T ss_dssp             CCSSCEEEEEEC
T ss_pred             ccCCcccEEEEe
Confidence            123468988874

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=93.29  E-value=0.038  Score=56.37  Aligned_cols=75  Identities=15%  Similarity=0.110  Sum_probs=54.8

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      +|.+++|.=.|.|--|.... +.+- .+|||+|.++ +++.|++.++..+.     ..++++++++-.++.     .   
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa-~aGA-~~V~ave~s~-~~~~a~~~~~~n~~-----~~~i~~i~~~~~~~~-----l---  146 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCA-QAGA-RRVYAVEASA-IWQQAREVVRFNGL-----EDRVHVLPGPVETVE-----L---  146 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHH-HTTC-SEEEEEECST-THHHHHHHHHHTTC-----TTTEEEEESCTTTCC-----C---
T ss_pred             CCCEEEEeCCCccHHHHHHH-HhCC-CEEEEEeChH-HHHHHHHHHHHcCC-----CceEEEEeeeeeeec-----C---
Confidence            68899999999997765444 4444 4799999996 66888887776554     347999998876641     1   


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                        ..++|.|+-++
T Consensus       147 --pe~~DvivsE~  157 (376)
T 4hc4_A          147 --PEQVDAIVSEW  157 (376)
T ss_dssp             --SSCEEEEECCC
T ss_pred             --CccccEEEeec
Confidence              24799887643

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=93.16  E-value=0.17  Score=45.01  Aligned_cols=77  Identities=13%  Similarity=0.097  Sum_probs=54.7

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ..+++..+. . ++..++|.-.|.|..+..+     ....++|+|.++.+++.|++++.           ++.+++.++.
T Consensus        26 ~~~~l~~~~-~-~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~-----------~~~~~~~d~~   87 (211)
T 2gs9_A           26 EERALKGLL-P-PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAP-----------EATWVRAWGE   87 (211)
T ss_dssp             HHHHHHTTC-C-CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCT-----------TSEEECCCTT
T ss_pred             HHHHHHHhc-C-CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCC-----------CcEEEEcccc
Confidence            345666664 3 7889999999999877766     22279999999999999988651           3556777765


Q ss_pred             hHHHHHhhhcccccccCccEEEEc
Q 012954          201 HIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ++.     .    ....+|.|++.
T Consensus        88 ~~~-----~----~~~~fD~v~~~  102 (211)
T 2gs9_A           88 ALP-----F----PGESFDVVLLF  102 (211)
T ss_dssp             SCC-----S----CSSCEEEEEEE
T ss_pred             cCC-----C----CCCcEEEEEEc
Confidence            531     1    12368888865

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=93.10  E-value=0.15  Score=45.28  Aligned_cols=58  Identities=16%  Similarity=0.179  Sum_probs=46.5

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL  178 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL  178 (452)
                      +...+..++++.+.  .++..++|.-.|.|..+..+++. +  ..++|+|.++.+++.+++++
T Consensus        17 ~~~~~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~   74 (230)
T 3cc8_A           17 YYNAVNPNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKL   74 (230)
T ss_dssp             ---CCCHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC
Confidence            34446778888885  47889999999999999988877 4  57999999999999998654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=93.07  E-value=0.092  Score=57.44  Aligned_cols=94  Identities=12%  Similarity=0.068  Sum_probs=64.1

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhC----C-------------------------------------
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAH----P-------------------------------------  156 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~----p-------------------------------------  156 (452)
                      +.|..-++.... ..++..++|-.+|.|+=........    |                                     
T Consensus       176 e~LAa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~  254 (703)
T 3v97_A          176 ETLAAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE  254 (703)
T ss_dssp             HHHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence            345555555554 4578899999999997655444321    1                                     


Q ss_pred             CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEc
Q 012954          157 ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       157 ~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ....++|+|+|+.|++.|+++++..+.     ...+++.+.++.++.   ...    ....+|.|+.|
T Consensus       255 ~~~~i~G~Did~~av~~A~~N~~~agv-----~~~i~~~~~D~~~~~---~~~----~~~~~d~Iv~N  310 (703)
T 3v97_A          255 YSSHFYGSDSDARVIQRARTNARLAGI-----GELITFEVKDVAQLT---NPL----PKGPYGTVLSN  310 (703)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEECCGGGCC---CSC----TTCCCCEEEEC
T ss_pred             CCccEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECChhhCc---ccc----ccCCCCEEEeC
Confidence            113599999999999999999887654     235888888887642   000    01258899998

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=92.94  E-value=0.02  Score=55.15  Aligned_cols=85  Identities=14%  Similarity=0.065  Sum_probs=54.5

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE--ccC
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF--AKN  198 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li--~~n  198 (452)
                      +.++++... ..++..++|.-+|.||.|..+++.    ++|+|+|+++. +..+++.  ....  +....++.++  +++
T Consensus        63 L~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~m-~~~a~~~--~~~~--~~~~~~v~~~~~~~D  132 (265)
T 2oxt_A           63 LAWMEERGY-VELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYTL-GVGGHEV--PRIT--ESYGWNIVKFKSRVD  132 (265)
T ss_dssp             HHHHHHHTS-CCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEECC-CCSSCCC--CCCC--CBTTGGGEEEECSCC
T ss_pred             HHHHHHcCC-CCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECchh-hhhhhhh--hhhh--hccCCCeEEEecccC
Confidence            556666532 457889999999999999998876    46999999983 2222110  0000  0001156777  777


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccC
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      +.++.           ...+|.|+.|++
T Consensus       133 ~~~l~-----------~~~fD~V~sd~~  149 (265)
T 2oxt_A          133 IHTLP-----------VERTDVIMCDVG  149 (265)
T ss_dssp             TTTSC-----------CCCCSEEEECCC
T ss_pred             HhHCC-----------CCCCcEEEEeCc
Confidence            76531           136999999976

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=92.84  E-value=0.026  Score=54.79  Aligned_cols=85  Identities=15%  Similarity=0.051  Sum_probs=55.0

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE--ccC
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF--AKN  198 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li--~~n  198 (452)
                      +.++++... ..++..++|.-+|.||.|..+++.    ++|+|+|+++. +..+++.  ....  +....++.++  +++
T Consensus        71 L~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~m-~~~a~~~--~~~~--~~~~~~v~~~~~~~D  140 (276)
T 2wa2_A           71 LAWIDERGG-VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYTL-GTSGHEK--PRLV--ETFGWNLITFKSKVD  140 (276)
T ss_dssp             HHHHHHTTS-CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEECC-CCTTSCC--CCCC--CCTTGGGEEEECSCC
T ss_pred             HHHHHHcCC-CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECchh-hhhhhhc--hhhh--hhcCCCeEEEeccCc
Confidence            556666532 357889999999999999998876    46999999983 2222111  0000  0011256777  777


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccC
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      +.++.           ...+|.|+.|++
T Consensus       141 ~~~l~-----------~~~fD~Vvsd~~  157 (276)
T 2wa2_A          141 VTKME-----------PFQADTVLCDIG  157 (276)
T ss_dssp             GGGCC-----------CCCCSEEEECCC
T ss_pred             HhhCC-----------CCCcCEEEECCC
Confidence            76531           136999999875

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=92.62  E-value=0.26  Score=48.71  Aligned_cols=74  Identities=18%  Similarity=0.143  Sum_probs=57.4

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      .....++++.+. ..+...+||.=.|.|..+.+|++++|+. +++.+|. |.+++.|++.++..+      ..|++++.+
T Consensus       165 ~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~-~~~~~dl-p~v~~~a~~~~~~~~------~~rv~~~~g  235 (353)
T 4a6d_A          165 SVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGC-KITVFDI-PEVVWTAKQHFSFQE------EEQIDFQEG  235 (353)
T ss_dssp             HHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSC-EEEEEEC-HHHHHHHHHHSCC--------CCSEEEEES
T ss_pred             HHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCc-eeEeccC-HHHHHHHHHhhhhcc------cCceeeecC
Confidence            334567777775 4467899999999999999999999986 5889997 889999998765432      347888888


Q ss_pred             Ccc
Q 012954          198 NFR  200 (452)
Q Consensus       198 nF~  200 (452)
                      +|-
T Consensus       236 D~~  238 (353)
T 4a6d_A          236 DFF  238 (353)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            763

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=92.54  E-value=0.094  Score=50.31  Aligned_cols=75  Identities=7%  Similarity=-0.088  Sum_probs=54.4

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ....++|.-.|.|+-+..+|+. +  .+|+++|+|+.+++.|++.+.......  ...+++++.++-...   +      
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~--~~~rv~~~~~D~~~~---~------  137 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVK--NNKNFTHAKQLLDLD---I------  137 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHH--TCTTEEEESSGGGSC---C------
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhcccc--CCCeEEEEechHHHH---H------
Confidence            3478999999999999999987 5  579999999999999988764321000  013677776654321   1      


Q ss_pred             ccccCccEEEEc
Q 012954          213 ILRSGVDAILMD  224 (452)
Q Consensus       213 l~~~~VDGILfD  224 (452)
                         ..+|.|+.|
T Consensus       138 ---~~fD~Ii~d  146 (262)
T 2cmg_A          138 ---KKYDLIFCL  146 (262)
T ss_dssp             ---CCEEEEEES
T ss_pred             ---hhCCEEEEC
Confidence               269999998

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=92.30  E-value=0.047  Score=53.61  Aligned_cols=85  Identities=19%  Similarity=0.075  Sum_probs=53.9

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeC----CHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDV----DPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDr----D~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      |.++++.. ..+++..++|.-+|.||.|..+++.    +.|+|+|.    .+..++..  ..+..      +..++++++
T Consensus        71 L~~i~~~~-~~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~--~~~~~------~~~~v~~~~  137 (305)
T 2p41_A           71 LRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPI--PMSTY------GWNLVRLQS  137 (305)
T ss_dssp             HHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCC--CCCST------TGGGEEEEC
T ss_pred             HHHHHHcC-CCCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHH--Hhhhc------CCCCeEEEe
Confidence            34444442 2357889999999999999998876    35999999    43222110  01111      113678887


Q ss_pred             c-CcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          197 K-NFRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       197 ~-nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      + ++..+.           ...+|.|+.|.+.++
T Consensus       138 ~~D~~~l~-----------~~~fD~V~sd~~~~~  160 (305)
T 2p41_A          138 GVDVFFIP-----------PERCDTLLCDIGESS  160 (305)
T ss_dssp             SCCTTTSC-----------CCCCSEEEECCCCCC
T ss_pred             ccccccCC-----------cCCCCEEEECCcccc
Confidence            7 655421           236999999987753

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=91.97  E-value=0.12  Score=47.31  Aligned_cols=47  Identities=13%  Similarity=-0.075  Sum_probs=39.4

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      .++..++|.-+|.|.++..+++...  ..|+|+|.++.+++.|++++..
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~  101 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKK  101 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhc
Confidence            4667899999999988888776543  3699999999999999988754

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=91.03  E-value=0.22  Score=49.35  Aligned_cols=65  Identities=15%  Similarity=0.211  Sum_probs=47.7

Q ss_pred             CCCCcccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCH---HHHHHHHHHHhhhc
Q 012954          112 QQSSHIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDP---SALAKARAHLNSLL  182 (452)
Q Consensus       112 ~~~~H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~---~Ai~~Ak~rL~~~~  182 (452)
                      .+....|+ |+..+|....  .++++++|.-+|.|  |.++... ++  .+.||+|+++   +.++.|++||...+
T Consensus       222 ~~~~~kp~~l~~~~i~~~~--~~~~~vlDpF~GsG--tt~~aa~~~~--r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          222 GHPTQKPAAVIERLVRALS--HPGSTVLDFFAGSG--VTARVAIQEG--RNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             SCTTCCCHHHHHHHHHHHS--CTTCEEEETTCTTC--HHHHHHHHHT--CEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCCCCHHHHHHHHHHhC--CCCCEEEecCCCCC--HHHHHHHHcC--CcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            34456777 8888888875  58999999999999  3333333 43  5789999999   99999999987654

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=90.86  E-value=0.49  Score=43.90  Aligned_cols=53  Identities=19%  Similarity=0.104  Sum_probs=41.9

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL  178 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL  178 (452)
                      +.+.+..+. . ++..++|.-+|.|..+..+++.   ...++|+|.++.+++.|+++.
T Consensus        44 ~~~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~   96 (260)
T 2avn_A           44 IGSFLEEYL-K-NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG   96 (260)
T ss_dssp             HHHHHHHHC-C-SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHHhc-C-CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhc
Confidence            344444443 2 6789999999999999988876   246999999999999998764

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=89.74  E-value=0.28  Score=48.92  Aligned_cols=59  Identities=19%  Similarity=0.173  Sum_probs=49.5

Q ss_pred             CccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH
Q 012954          115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAH  177 (452)
Q Consensus       115 ~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~r  177 (452)
                      .|..-+.+.+++.+. ..++..++|.-.|.|..+..+.+..   ..|+|+|.++.+++.|+++
T Consensus        90 ~~~~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g---~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A           90 EHFAMLARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG---VRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             HHHHHHHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT---CEEEEECCCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC---CcEEEECCCHHHHHHHHHc
Confidence            366667888888886 4578899999999999998888752   3699999999999999875

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=88.97  E-value=0.22  Score=46.72  Aligned_cols=47  Identities=9%  Similarity=-0.057  Sum_probs=38.2

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      .++..++|.-+|.|.|+...+...  ...|+|+|.++.+++.|+++++.
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~  100 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKK  100 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhc
Confidence            367789999999998887655442  23699999999999999998764

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=88.00  E-value=0.8  Score=48.69  Aligned_cols=87  Identities=14%  Similarity=0.069  Sum_probs=60.4

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCC--CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhh
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHP--ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQI  209 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p--~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~  209 (452)
                      .++..++|-++|.||-..++++.+.  ....++|+|+|+.++..|+.++.-.+..    ..++.+.++++-..+  +...
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~----~~~~~I~~gDtL~~d--~p~~  293 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP----IENQFLHNADTLDED--WPTQ  293 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC----GGGEEEEESCTTTSC--SCCS
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC----cCccceEecceeccc--cccc
Confidence            4678999999999999888888753  2357999999999999998876544321    135667777642210  0000


Q ss_pred             cccccccCccEEEEccCCC
Q 012954          210 DENILRSGVDAILMDLGMS  228 (452)
Q Consensus       210 ~~~l~~~~VDGILfDLGvS  228 (452)
                          ....+|.||.|-=|+
T Consensus       294 ----~~~~fD~IvaNPPf~  308 (542)
T 3lkd_A          294 ----EPTNFDGVLMNPPYS  308 (542)
T ss_dssp             ----SCCCBSEEEECCCTT
T ss_pred             ----ccccccEEEecCCcC
Confidence                124689999987776

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=87.70  E-value=0.48  Score=44.66  Aligned_cols=58  Identities=10%  Similarity=0.004  Sum_probs=42.0

Q ss_pred             hHHHHhhccCC-CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          121 LGEVLDVFSSS-RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       121 l~Evl~~L~~~-~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      +..+++.|... .++..++|.-+|.|. ...++...+. ..|+|+|+.+.+++.|+++++.
T Consensus        58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~-~~~l~~~~~~-~~v~gvD~s~~~l~~a~~~~~~  116 (289)
T 2g72_A           58 LRCLAQTFATGEVSGRTLIDIGSGPTV-YQLLSACSHF-EDITMTDFLEVNRQELGRWLQE  116 (289)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCC-GGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCCCCeEEEECCCcCh-HHHHhhccCC-CeEEEeCCCHHHHHHHHHHHhh
Confidence            55666666421 267899999999997 4344444333 4799999999999999987754

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=87.47  E-value=0.63  Score=46.14  Aligned_cols=67  Identities=19%  Similarity=0.354  Sum_probs=50.2

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +..++++.+....+...++|.-.|.|..+..|++++|.. +++++|. +.+++.|++.            .+++++.++|
T Consensus       190 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~  255 (368)
T 3reo_A          190 TMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSI-NAINFDL-PHVIQDAPAF------------SGVEHLGGDM  255 (368)
T ss_dssp             HHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHTTCCCC------------TTEEEEECCT
T ss_pred             HHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCC-EEEEEeh-HHHHHhhhhc------------CCCEEEecCC
Confidence            456777776423467899999999999999999999885 6899999 8888765421            2566666665


Q ss_pred             c
Q 012954          200 R  200 (452)
Q Consensus       200 ~  200 (452)
                      .
T Consensus       256 ~  256 (368)
T 3reo_A          256 F  256 (368)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=87.32  E-value=2.2  Score=44.99  Aligned_cols=62  Identities=10%  Similarity=0.061  Sum_probs=46.9

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHH
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIK  203 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~  203 (452)
                      .+..++|.=+|+|-.|..+.+. +  ..|.|+|..+.+|+.|+.+..+.+      ..++.+.+.+-+++.
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~-g--a~V~giD~~~~~i~~a~~~a~~~~------~~~~~~~~~~~~~~~  127 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASK-G--ATIVGIDFQQENINVCRALAEENP------DFAAEFRVGRIEEVI  127 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHTST------TSEEEEEECCHHHHH
T ss_pred             CCCeEEEECCCCcHHHHHHHhC-C--CEEEEECCCHHHHHHHHHHHHhcC------CCceEEEECCHHHHh
Confidence            3468999999999988888764 3  469999999999999998765432      235667677666553

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=87.27  E-value=1.2  Score=44.05  Aligned_cols=80  Identities=14%  Similarity=0.142  Sum_probs=52.8

Q ss_pred             CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC-cchHHHHHhhhcccc
Q 012954          135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN-FRHIKSVLGQIDENI  213 (452)
Q Consensus       135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n-F~~i~~~L~~~~~~l  213 (452)
                      ..++=.=.|.||=..++|+. ++..+|..+|+|+..++.|++.|...... .....|++++.+. +..    +++.    
T Consensus        85 k~VLIiGgGdG~~~revlk~-~~v~~v~~VEID~~Vv~~a~~~lp~~~~~-~~~dpRv~v~~~Dg~~~----l~~~----  154 (294)
T 3o4f_A           85 KHVLIIGGGDGAMLREVTRH-KNVESITMVEIDAGVVSFCRQYLPNHNAG-SYDDPRFKLVIDDGVNF----VNQT----  154 (294)
T ss_dssp             CEEEEESCTTSHHHHHHHTC-TTCCEEEEEESCHHHHHHHHHHCHHHHTT-GGGCTTEEEEESCTTTT----TSCS----
T ss_pred             CeEEEECCCchHHHHHHHHc-CCcceEEEEcCCHHHHHHHHhcCcccccc-ccCCCcEEEEechHHHH----Hhhc----
Confidence            44555567788888888865 44457999999999999999876432110 0002377776654 443    3332    


Q ss_pred             cccCccEEEEcc
Q 012954          214 LRSGVDAILMDL  225 (452)
Q Consensus       214 ~~~~VDGILfDL  225 (452)
                       ...+|.|+.|+
T Consensus       155 -~~~yDvIi~D~  165 (294)
T 3o4f_A          155 -SQTFDVIISDC  165 (294)
T ss_dssp             -SCCEEEEEESC
T ss_pred             -cccCCEEEEeC
Confidence             24799999996

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=87.22  E-value=0.72  Score=45.73  Aligned_cols=67  Identities=15%  Similarity=0.288  Sum_probs=50.3

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +...+++.+....+...++|.-.|.|..+..|++++|.. +++++|. |.+++.|++.            .+++++..+|
T Consensus       188 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~------------~~v~~~~~D~  253 (364)
T 3p9c_A          188 ITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTI-KGVNFDL-PHVISEAPQF------------PGVTHVGGDM  253 (364)
T ss_dssp             HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHTTCCCC------------TTEEEEECCT
T ss_pred             HHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCC-eEEEecC-HHHHHhhhhc------------CCeEEEeCCc
Confidence            356677776423467899999999999999999999885 6899999 8887665421            2566666665


Q ss_pred             c
Q 012954          200 R  200 (452)
Q Consensus       200 ~  200 (452)
                      .
T Consensus       254 ~  254 (364)
T 3p9c_A          254 F  254 (364)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=87.12  E-value=0.71  Score=45.10  Aligned_cols=69  Identities=17%  Similarity=0.151  Sum_probs=48.7

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      ..++++.+. ..++..++|.-.|.|..+..+++++|.. +++++|. +..+.  +++++..+.     ..+++++..+|
T Consensus       173 ~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~--~~~~~~~~~-----~~~v~~~~~d~  241 (348)
T 3lst_A          173 HLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGL-QGVLLDR-AEVVA--RHRLDAPDV-----AGRWKVVEGDF  241 (348)
T ss_dssp             HHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTE-EEEEEEC-HHHHT--TCCCCCGGG-----TTSEEEEECCT
T ss_pred             HHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCC-EEEEecC-HHHhh--cccccccCC-----CCCeEEEecCC
Confidence            557777775 4577899999999999999999999874 6899999 55554  222222221     23566666666

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=86.77  E-value=0.26  Score=48.15  Aligned_cols=90  Identities=13%  Similarity=0.034  Sum_probs=62.9

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc-Cc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK-NF  199 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~-nF  199 (452)
                      |.|+.+-+. .++++.+||...+-||-|...+...+.. +|+|+|+-..-.+.- ...+.|+      -+-+++..+ ++
T Consensus        67 L~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~-~V~avdvG~~ghe~P-~~~~s~g------wn~v~fk~gvDv  137 (267)
T 3p8z_A           67 LQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVT-EVRGYTKGGPGHEEP-VPMSTYG------WNIVKLMSGKDV  137 (267)
T ss_dssp             HHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEE-EEEEECCCSTTSCCC-CCCCCTT------TTSEEEECSCCG
T ss_pred             HHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCC-EEEEEecCCCCccCc-chhhhcC------cCceEEEeccce
Confidence            788888885 5799999999999999999888776654 799999985432100 0112232      235777776 65


Q ss_pred             chHHHHHhhhcccccccCccEEEEccCCCcc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDLGMSSM  230 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~  230 (452)
                      ..+    .       ...+|-||-|+|=||.
T Consensus       138 ~~~----~-------~~~~DtllcDIgeSs~  157 (267)
T 3p8z_A          138 FYL----P-------PEKCDTLLCDIGESSP  157 (267)
T ss_dssp             GGC----C-------CCCCSEEEECCCCCCS
T ss_pred             eec----C-------CccccEEEEecCCCCC
Confidence            322    1       2469999999998774

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=86.50  E-value=1.4  Score=45.72  Aligned_cols=85  Identities=12%  Similarity=0.171  Sum_probs=61.6

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccC------CChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCC
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLG------AAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPH  189 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG------~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~  189 (452)
                      +.-+.++.+..+.  .+...++|.=+|      .||.|..+++++ |+ +.|+|+|+++.+.       .  .      .
T Consensus       202 y~~~Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~-a~V~GVDiSp~m~-------~--~------~  263 (419)
T 3sso_A          202 FTPHYDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPR-GQIYGLDIMDKSH-------V--D------E  263 (419)
T ss_dssp             CHHHHHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTT-CEEEEEESSCCGG-------G--C------B
T ss_pred             HHHHHHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHh-------h--c------C
Confidence            5557788887775  356899999999      688999999885 54 6899999998852       1  1      1


Q ss_pred             ceEEEEccCcchHHHH--HhhhcccccccCccEEEEc
Q 012954          190 LKTHTFAKNFRHIKSV--LGQIDENILRSGVDAILMD  224 (452)
Q Consensus       190 ~r~~li~~nF~~i~~~--L~~~~~~l~~~~VDGILfD  224 (452)
                      .++++++++..++.-.  +.+.     ...+|.|+.|
T Consensus       264 ~rI~fv~GDa~dlpf~~~l~~~-----d~sFDlVisd  295 (419)
T 3sso_A          264 LRIRTIQGDQNDAEFLDRIARR-----YGPFDIVIDD  295 (419)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHH-----HCCEEEEEEC
T ss_pred             CCcEEEEecccccchhhhhhcc-----cCCccEEEEC
Confidence            3789999998886422  2111     1369999876

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=85.66  E-value=3.1  Score=39.22  Aligned_cols=99  Identities=13%  Similarity=-0.007  Sum_probs=59.0

Q ss_pred             CCCCEEEEEccCCChhHHHHHHh----CCCCCEE--EEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRA----HPELKLH--IGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV  205 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~----~p~~g~V--igfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~  205 (452)
                      .++..++|.-.|.|.-|..+|+.    .+. ..+  +|+|..+++++.|++++.....-   ...++.+.......+..-
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~-~~v~~~~vD~S~~ml~~a~~~~~~~~~~---~~v~~~~~~~~~~~~~~~  126 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPG-VCINNEVVEPSAEQIAKYKELVAKTSNL---ENVKFAWHKETSSEYQSR  126 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTT-CEEEEEEECSCHHHHHHHHHHHHTCSSC---TTEEEEEECSCHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCC-ceeeEEEEeCCHHHHHHHHHHHHhccCC---CcceEEEEecchhhhhhh
Confidence            45679999999999766656543    344 334  99999999999999987642110   012344445544433211


Q ss_pred             HhhhcccccccCccEEEEccCCCccCCCCCCCCc
Q 012954          206 LGQIDENILRSGVDAILMDLGMSSMQVNNPERGF  239 (452)
Q Consensus       206 L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGF  239 (452)
                      +.. +  +....+|.|++-..  .++++|+.+.+
T Consensus       127 ~~~-~--~~~~~fD~V~~~~~--l~~~~d~~~~l  155 (292)
T 2aot_A          127 MLE-K--KELQKWDFIHMIQM--LYYVKDIPATL  155 (292)
T ss_dssp             HHT-T--TCCCCEEEEEEESC--GGGCSCHHHHH
T ss_pred             hcc-c--cCCCceeEEEEeee--eeecCCHHHHH
Confidence            100 0  01236888886543  46677766543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=85.49  E-value=1.4  Score=45.21  Aligned_cols=83  Identities=12%  Similarity=0.095  Sum_probs=53.2

Q ss_pred             CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccC-CCC-CCceEEEEcc-CcchHHHHHhhhcc
Q 012954          135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHG-QAH-PHLKTHTFAK-NFRHIKSVLGQIDE  211 (452)
Q Consensus       135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~-~~~-~~~r~~li~~-nF~~i~~~L~~~~~  211 (452)
                      ..++=.=.|.||=..++|+ ++. .+|..+|+|+..++.|++.+...... ... ...|++++.+ .+..+.+..++.  
T Consensus       207 krVLIIGgGdG~~~revlk-h~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~--  282 (381)
T 3c6k_A          207 KDVLILGGGDGGILCEIVK-LKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG--  282 (381)
T ss_dssp             CEEEEEECTTCHHHHHHHT-TCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT--
T ss_pred             CeEEEECCCcHHHHHHHHh-cCC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc--
Confidence            4454466788888888986 455 57999999999999999876432110 000 0125666554 455555444321  


Q ss_pred             cccccCccEEEEcc
Q 012954          212 NILRSGVDAILMDL  225 (452)
Q Consensus       212 ~l~~~~VDGILfDL  225 (452)
                          ..+|.|+.|+
T Consensus       283 ----~~yDvIIvDl  292 (381)
T 3c6k_A          283 ----REFDYVINDL  292 (381)
T ss_dssp             ----CCEEEEEEEC
T ss_pred             ----CceeEEEECC
Confidence                3699999996

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=85.41  E-value=0.82  Score=45.89  Aligned_cols=89  Identities=13%  Similarity=0.041  Sum_probs=58.8

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc-Cc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK-NF  199 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~-nF  199 (452)
                      |.|+.+-.. .++++.+||...+-||-|...+...+.. +|+|+|+-..-.+.= ...++++-      .-++++.. |+
T Consensus        83 L~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~-~V~avdvG~~~he~P-~~~~ql~w------~lV~~~~~~Dv  153 (321)
T 3lkz_A           83 LRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQ-EVRGYTKGGPGHEEP-QLVQSYGW------NIVTMKSGVDV  153 (321)
T ss_dssp             HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEE-EEEEECCCSTTSCCC-CCCCBTTG------GGEEEECSCCT
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCC-EEEEEEcCCCCccCc-chhhhcCC------cceEEEeccCH
Confidence            778888765 5789999999999999999777766553 799999984311000 00012211      13555555 65


Q ss_pred             chHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      .++.           ...+|.||.|+|=||
T Consensus       154 ~~l~-----------~~~~D~ivcDigeSs  172 (321)
T 3lkz_A          154 FYRP-----------SECCDTLLCDIGESS  172 (321)
T ss_dssp             TSSC-----------CCCCSEEEECCCCCC
T ss_pred             hhCC-----------CCCCCEEEEECccCC
Confidence            4432           236999999999665

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=84.98  E-value=1.1  Score=44.15  Aligned_cols=67  Identities=18%  Similarity=0.300  Sum_probs=50.2

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      .+.++++.+....++..++|.-.|.|..+..+++++|.. +++++|+ +.+++.|++.            .+++++..+|
T Consensus       196 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~  261 (372)
T 1fp1_D          196 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLI-KGINFDL-PQVIENAPPL------------SGIEHVGGDM  261 (372)
T ss_dssp             HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHTTCCCC------------TTEEEEECCT
T ss_pred             HHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCC-eEEEeCh-HHHHHhhhhc------------CCCEEEeCCc
Confidence            356777776323467899999999999999999999875 6899999 9888766531            1466666666


Q ss_pred             c
Q 012954          200 R  200 (452)
Q Consensus       200 ~  200 (452)
                      .
T Consensus       262 ~  262 (372)
T 1fp1_D          262 F  262 (372)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=84.67  E-value=3.1  Score=42.02  Aligned_cols=82  Identities=9%  Similarity=0.009  Sum_probs=65.1

Q ss_pred             CCCCccccchHHHHhhccCCC-----CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCC
Q 012954          112 QQSSHIPVMLGEVLDVFSSSR-----TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQA  186 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~-----~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~  186 (452)
                      .++-+-|=+++.+++.+....     ++..+|++==|.|..|..||+.... ++|+++++|+.-+..-++.+ .+     
T Consensus        32 QnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~vvavE~D~~l~~~L~~~~-~~-----  104 (353)
T 1i4w_A           32 FKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKF-EG-----  104 (353)
T ss_dssp             CCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHT-TT-----
T ss_pred             cCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCC-CEEEEEecCHHHHHHHHHhc-cC-----
Confidence            677788889999999996321     3589999999999999999987433 46999999999887766654 21     


Q ss_pred             CCCceEEEEccCcchHH
Q 012954          187 HPHLKTHTFAKNFRHIK  203 (452)
Q Consensus       187 ~~~~r~~li~~nF~~i~  203 (452)
                         .+++++++++-.++
T Consensus       105 ---~~l~ii~~D~l~~~  118 (353)
T 1i4w_A          105 ---SPLQILKRDPYDWS  118 (353)
T ss_dssp             ---SSCEEECSCTTCHH
T ss_pred             ---CCEEEEECCccchh
Confidence               37899999986655

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=84.66  E-value=1.3  Score=49.83  Aligned_cols=89  Identities=10%  Similarity=0.047  Sum_probs=57.0

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCC--CCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPE--LKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~--~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      ++..++|-++|.|+=..++.+.++.  ...++|+|+|+.|++.|+.++.-.......+.....+..++|....    .. 
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~----~~-  395 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLN----PE-  395 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCC----GG-
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccc----cc-
Confidence            5789999999999988888877652  2459999999999999954432211000001112345566664421    00 


Q ss_pred             ccccccCccEEEEccCCCc
Q 012954          211 ENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       211 ~~l~~~~VDGILfDLGvSS  229 (452)
                         ....+|.||.|-=|+.
T Consensus       396 ---~~~kFDVVIgNPPYg~  411 (878)
T 3s1s_A          396 ---DFANVSVVVMNPPYVS  411 (878)
T ss_dssp             ---GGTTEEEEEECCBCCS
T ss_pred             ---ccCCCCEEEECCCccc
Confidence               1246999999988873

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=83.63  E-value=1.6  Score=46.18  Aligned_cols=96  Identities=14%  Similarity=0.076  Sum_probs=59.5

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCC------------CCEEEEEeCCHHHHHHHHHHHhhhccCCCCC
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPE------------LKLHIGVDVDPSALAKARAHLNSLLHGQAHP  188 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~------------~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~  188 (452)
                      ++-+++.+. +.++..++|-++|.||=-.+..+.+..            ...++|+|+|+.+...|+-.+--.+..    
T Consensus       206 v~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~----  280 (530)
T 3ufb_A          206 VRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE----  280 (530)
T ss_dssp             HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS----
T ss_pred             HHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc----
Confidence            455556665 568889999999999987665543211            124899999999999998765443321    


Q ss_pred             CceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          189 HLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       189 ~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                        ...+.+++.=..  -+.+.+   ....+|.||.|-=|+
T Consensus       281 --~~~I~~~dtL~~--~~~~~~---~~~~fD~Il~NPPf~  313 (530)
T 3ufb_A          281 --YPRIDPENSLRF--PLREMG---DKDRVDVILTNPPFG  313 (530)
T ss_dssp             --CCEEECSCTTCS--CGGGCC---GGGCBSEEEECCCSS
T ss_pred             --cccccccccccC--chhhhc---ccccceEEEecCCCC
Confidence              223445443110  011111   123689999887665

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=83.42  E-value=5.1  Score=38.99  Aligned_cols=83  Identities=10%  Similarity=-0.070  Sum_probs=56.1

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      +.+.++|.-+|.|==+.+++   + ...|+|+|+|+.+++.+++.+...+.       ++.+.+.++..-     .    
T Consensus       105 ~p~~VLDlGCG~gpLal~~~---~-~~~y~a~DId~~~i~~ar~~~~~~g~-------~~~~~v~D~~~~-----~----  164 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER---G-IASVWGCDIHQGLGDVITPFAREKDW-------DFTFALQDVLCA-----P----  164 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT---T-CSEEEEEESBHHHHHHHHHHHHHTTC-------EEEEEECCTTTS-----C----
T ss_pred             CCCeEEEecCCccHHHHHhc---c-CCeEEEEeCCHHHHHHHHHHHHhcCC-------CceEEEeecccC-----C----
Confidence            56899999999994444444   4 46799999999999999998766532       555555555421     1    


Q ss_pred             ccccCccEEEEccCCCccCCCCCCCC
Q 012954          213 ILRSGVDAILMDLGMSSMQVNNPERG  238 (452)
Q Consensus       213 l~~~~VDGILfDLGvSS~QLDd~~RG  238 (452)
                       ....+|.||+.+  .-+.|++-+||
T Consensus       165 -~~~~~DvvLllk--~lh~LE~q~~~  187 (253)
T 3frh_A          165 -PAEAGDLALIFK--LLPLLEREQAG  187 (253)
T ss_dssp             -CCCBCSEEEEES--CHHHHHHHSTT
T ss_pred             -CCCCcchHHHHH--HHHHhhhhchh
Confidence             124688886643  23566665555

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=82.18  E-value=0.95  Score=39.30  Aligned_cols=40  Identities=20%  Similarity=0.381  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeecchh-----HHHHHHHHHhh
Q 012954          344 KTLESSLHACFDCLAPGGRLGVISFHSLE-----DRIVKQTFLSI  383 (452)
Q Consensus       344 ~~L~~~L~~a~~~L~pGGRLvVISFHSLE-----DRIVK~~F~~~  383 (452)
                      +....+|..+..+|+|||+++++.|+.-+     -..+.+++..+
T Consensus       112 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l  156 (185)
T 3mti_A          112 HTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGL  156 (185)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence            44556788889999999999999997542     24455555443

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=82.13  E-value=0.48  Score=50.35  Aligned_cols=98  Identities=8%  Similarity=0.040  Sum_probs=59.3

Q ss_pred             ccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCC--------------CCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          117 IPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPE--------------LKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       117 ~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~--------------~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      +|- +++-+++.+. +.+ +.++|-++|.||=..+.++.+..              ...++|+|+|+.++..|+.++.-.
T Consensus       229 TP~~Vv~lmv~ll~-p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~  306 (544)
T 3khk_A          229 TPKSIVTLIVEMLE-PYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIR  306 (544)
T ss_dssp             CCHHHHHHHHHHHC-CCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHh-cCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHh
Confidence            554 3444455554 444 49999999999877666543210              236999999999999999877544


Q ss_pred             ccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          182 LHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       182 ~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      +..     .++.+++++.-.     ...   .....+|.||.|-=|+.
T Consensus       307 gi~-----~~i~i~~gDtL~-----~~~---~~~~~fD~Iv~NPPf~~  341 (544)
T 3khk_A          307 GID-----FNFGKKNADSFL-----DDQ---HPDLRADFVMTNPPFNM  341 (544)
T ss_dssp             TCC-----CBCCSSSCCTTT-----SCS---CTTCCEEEEEECCCSSC
T ss_pred             CCC-----cccceeccchhc-----Ccc---cccccccEEEECCCcCC
Confidence            321     122224444211     000   01246899999876654

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=81.82  E-value=4.2  Score=41.28  Aligned_cols=50  Identities=14%  Similarity=0.185  Sum_probs=43.0

Q ss_pred             CCCCEEEEEccCCChhHHHHHH-hCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          132 RTITSFVDCTLGAAGHSSAIIR-AHPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~-~~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      .+++++||+=.+-|-+|..+++ ..++.++||+|+-+|.+.+..++.++.|
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~  275 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY  275 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhh
Confidence            5889999999999999999884 4665578999999999999988877653

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=81.45  E-value=2.3  Score=42.00  Aligned_cols=89  Identities=16%  Similarity=0.146  Sum_probs=62.0

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      +...++|.-+|.|==|..++...|. ..|+|+|+|+.+++.+++++..++.       ++.+.+.++..     ..    
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~-a~y~a~DId~~~le~a~~~l~~~g~-------~~~~~v~D~~~-----~~----  194 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAE-TVYIASDIDARLVGFVDEALTRLNV-------PHRTNVADLLE-----DR----  194 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTT-CEEEEEESBHHHHHHHHHHHHHTTC-------CEEEEECCTTT-----SC----
T ss_pred             CCceeeeeccCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhcCC-------CceEEEeeecc-----cC----
Confidence            3569999999999666666655555 5799999999999999999987643       34444444421     11    


Q ss_pred             ccccCccEEEEccCCCccCCCCCCCCccc
Q 012954          213 ILRSGVDAILMDLGMSSMQVNNPERGFSV  241 (452)
Q Consensus       213 l~~~~VDGILfDLGvSS~QLDd~~RGFSf  241 (452)
                       ....+|.+|+.+  .-+.||+..||=-|
T Consensus       195 -p~~~~DvaL~lk--ti~~Le~q~kg~g~  220 (281)
T 3lcv_B          195 -LDEPADVTLLLK--TLPCLETQQRGSGW  220 (281)
T ss_dssp             -CCSCCSEEEETT--CHHHHHHHSTTHHH
T ss_pred             -CCCCcchHHHHH--HHHHhhhhhhHHHH
Confidence             235689888765  45677777666433

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=80.96  E-value=2.4  Score=41.45  Aligned_cols=96  Identities=8%  Similarity=0.002  Sum_probs=63.8

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCC----CCCEEEEEeCCH--------------H------------
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHP----ELKLHIGVDVDP--------------S------------  169 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p----~~g~VigfDrD~--------------~------------  169 (452)
                      +|.+++..+......+.++.+=...|+-+..|.+.++    +.++|++||...              .            
T Consensus        93 ~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~  172 (282)
T 2wk1_A           93 NIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAV  172 (282)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCC
T ss_pred             HHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchh
Confidence            4566777664223457999999999976666544332    246799999531              1            


Q ss_pred             HHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954          170 ALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       170 Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      .++.+++.++.++..    ..+++++.+.|.+   .|.+..    ...+|.|.+|..
T Consensus       173 ~~~~ar~n~~~~gl~----~~~I~li~Gda~e---tL~~~~----~~~~d~vfIDaD  218 (282)
T 2wk1_A          173 SEEEVRRNFRNYDLL----DEQVRFLPGWFKD---TLPTAP----IDTLAVLRMDGD  218 (282)
T ss_dssp             CHHHHHHHHHHTTCC----STTEEEEESCHHH---HSTTCC----CCCEEEEEECCC
T ss_pred             HHHHHHHHHHHcCCC----cCceEEEEeCHHH---HHhhCC----CCCEEEEEEcCC
Confidence            356778888877541    1479999999954   344321    246899999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	452
d1m6ya1	101	a.60.13.1 (A:115-215) Putative methyltransferase T	2e-24
d1wg8a1	98	a.60.13.1 (A:109-206) Putative methyltransferase T	1e-20
d1wg8a2	182	c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransf	9e-18
d1wg8a2	182	c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransf	7e-12
d1m6ya2	192	c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf	3e-16
d1m6ya2	192	c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf	7e-12

>d1m6ya1 a.60.13.1 (A:115-215) Putative methyltransferase TM0872, insert domain {Thermotoga maritima [TaxId: 2336]} Length = 101

class: All alpha proteins
fold: SAM domain-like
superfamily: Putative methyltransferase TM0872, insert domain
family: Putative methyltransferase TM0872, insert domain
domain: Putative methyltransferase TM0872, insert domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 95.2 bits (236), Expect = 2e-24
 Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 3/103 (2%)

Query: 237 RGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARL 296
           RGF+   + PLDMRMD ++ + A+ +LN  P+ E+ R++ EYGEE  +   +    +   
Sbjct: 2   RGFTFEREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFA--RRIARKIVE 59

Query: 297 RGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAV 339
              L++T +LV  ++   P    RR+     AT+ FQA+RI V
Sbjct: 60  NRPLNTTLDLVKAVREALPSYEIRRRK-RHFATKTFQAIRIYV 101

>d1wg8a1 a.60.13.1 (A:109-206) Putative methyltransferase TM0872, insert domain {Thermus thermophilus [TaxId: 274]} Length = 98

class: All alpha proteins
fold: SAM domain-like
superfamily: Putative methyltransferase TM0872, insert domain
family: Putative methyltransferase TM0872, insert domain
domain: Putative methyltransferase TM0872, insert domain
species: Thermus thermophilus [TaxId: 274]

 Score = 84.5 bits (208), Expect = 1e-20
 Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 6/104 (5%)

Query: 237 RGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARL 296
           RGFS   +GPLDMRM  +    A++++N  P   + R+LRE GEE   + +   IV AR 
Sbjct: 1   RGFSYQKEGPLDMRMGLE-GPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAARE 59

Query: 297 RGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVN 340
           +  + +T +L ++++      R         A + FQALRI VN
Sbjct: 60  KAPIETTTQLAEIVRKAVGFRRA-----GHPARKTFQALRIYVN 98

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} Length = 182

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

 Score = 78.6 bits (193), Expect = 9e-18
 Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 21/180 (11%)

Query: 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174
           +H+PV+  E LD+ +       +VD TLG AGH+  I+     +   IG+D DP A+A+A
Sbjct: 1   THVPVLYQEALDLLAVRPGGV-YVDATLGGAGHARGILERGGRV---IGLDQDPEAVARA 56

Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
           +      L                    +              VD IL DLG+SS  +++
Sbjct: 57  KGLHLPGLTVVQGNFRHLKRHLAALGVER--------------VDGILADLGVSSFHLDD 102

Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
           P    + L +  L+   +  A      ++      +  RV++ +  ES   +L  K +  
Sbjct: 103 PSDELNALKEF-LEQAAEVLAPGGRLVVIAFHSLED--RVVKRFLRESGLKVLTKKPLVP 159

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} Length = 182

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

 Score = 61.7 bits (149), Expect = 7e-12
 Identities = 40/114 (35%), Positives = 52/114 (45%), Gaps = 35/114 (30%)

Query: 339 VNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEEL 398
            +DEL  L+  L    + LAPGGRL VI+FHSLEDR+VK+                    
Sbjct: 103 PSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFL------------------ 144

Query: 399 RNIRDDNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
                            +    K+LTK+P+ PS +E   N R RSAKLR  +K 
Sbjct: 145 -----------------RESGLKVLTKKPLVPSEKEAAQNPRARSAKLRAAEKE 181

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 74.4 bits (182), Expect = 3e-16
 Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 15/179 (8%)

Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
           HIPVM+ EV++           +DCT+G  GHS AI+   P  ++ IG+DVD   L  A 
Sbjct: 7   HIPVMVREVIEFLKPEDEKI-ILDCTVGEGGHSRAILEHCPGCRI-IGIDVDSEVLRIAE 64

Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
                          +   F  ++R    +L  +        VD ILMDLG+S+ Q+   
Sbjct: 65  EK-------LKEFSDRVSLFKVSYREADFLLKTLGIE----KVDGILMDLGVSTYQLKGE 113

Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
            R    L +  L    D         +++ +   E   V   +       +L  K V+ 
Sbjct: 114 NRELENLKEF-LKKAEDLLNPGGRIVVIS-FHSLEDRIVKETFRNSKKLRILTEKPVRP 170

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 62.1 bits (150), Expect = 7e-12
 Identities = 44/113 (38%), Positives = 56/113 (49%), Gaps = 34/113 (30%)

Query: 340 NDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELR 399
           N EL+ L+  L    D L PGGR+ VISFHSLEDRIVK+TF                  R
Sbjct: 114 NRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETF------------------R 155

Query: 400 NIRDDNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
           N +                  +ILT++P+ PS EE R N R RS +LR  ++I
Sbjct: 156 NSK----------------KLRILTEKPVRPSEEEIRENPRARSGRLRAAERI 192

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	452
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	100.0
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	100.0
d1wg8a1	98	Putative methyltransferase TM0872, insert domain {	100.0
d1m6ya1	101	Putative methyltransferase TM0872, insert domain {	100.0
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.15
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.1
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.03
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.0
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.99
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.96
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.89
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.89
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.76
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.74
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.65
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.61
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.57
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.56
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.52
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	97.51
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.42
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.41
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	97.4
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	97.35
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.28
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.24
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.23
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	97.19
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.16
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.16
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.12
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.09
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.08
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.07
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	97.04
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	96.99
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	96.98
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	96.98
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	96.94
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	96.92
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	96.87
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	96.87
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.86
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	96.83
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.82
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	96.8
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	96.79
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.73
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	96.72
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.71
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	96.58
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	96.56
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	96.52
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	96.49
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.45
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	96.39
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	96.31
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	96.3
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	96.3
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.29
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	96.15
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	95.83
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	95.81
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	95.65
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	95.57
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	95.54
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	95.5
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	95.48
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	95.34
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	95.28
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	94.95
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	94.82
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	94.69
d2h00a1	250	Methyltransferase 10 domain containing protein MET	94.47
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	94.26
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	93.64
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	93.23
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	93.18
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	92.8
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	91.71
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	90.92
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	90.29
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	90.22
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	89.55
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	88.57
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	88.48
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	88.28
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	88.13
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	87.89
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	87.86
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	87.59
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	85.78
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	85.5
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	85.28
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	85.12
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	83.61
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	83.42
d2edua1	91	KIF22, C-terminal domain {Human (Homo sapiens) [Ta	80.37

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.5e-57  Score=421.87  Aligned_cols=188  Identities=43%  Similarity=0.657  Sum_probs=173.0

Q ss_pred             CCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954          114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       114 ~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      ..|+|||++|++++|. ++++++|||||+|.||||.+||+++|+ ++|||+|+|++|++.|+++++.|..       |++
T Consensus         5 ~~H~pVll~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~-~~vi~~D~d~~~l~~a~~~l~~~~~-------r~~   75 (192)
T d1m6ya2           5 QRHIPVMVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSD-------RVS   75 (192)
T ss_dssp             SSCCCTTHHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGTT-------TEE
T ss_pred             CCCCchHHHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCC-CeEEEeechHHHHHHHHHhhccccc-------ccc
Confidence            4499999999999998 579999999999999999999999986 6899999999999999999998853       799


Q ss_pred             EEccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCcccCCCCCCcccCCCCCCCCHHHHHhcCChHHHHH
Q 012954          194 TFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGR  273 (452)
Q Consensus       194 li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~eL~~  273 (452)
                      ++++||++++.++...+    ...||||||||||||+|||++                                      
T Consensus        76 ~~~~~f~~~~~~~~~~~----~~~vdgIl~DlGvSs~Qld~~--------------------------------------  113 (192)
T d1m6ya2          76 LFKVSYREADFLLKTLG----IEKVDGILMDLGVSTYQLKGE--------------------------------------  113 (192)
T ss_dssp             EEECCGGGHHHHHHHTT----CSCEEEEEEECSCCHHHHHTS--------------------------------------
T ss_pred             chhHHHhhHHHHHHHcC----CCCcceeeeccchhHhhhhhh--------------------------------------
Confidence            99999999999998765    358999999999999999865                                      


Q ss_pred             HHHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCCCcCCCCCccchhHHHHHHHHHHHHhhHHHHHHHHHHH
Q 012954          274 VLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHAC  353 (452)
Q Consensus       274 Ifr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~~~~~~~~~~hpATR~FQALRI~VN~EL~~L~~~L~~a  353 (452)
                                                                                        |.|+..++++|..+
T Consensus       114 ------------------------------------------------------------------~r~~~~~~~~L~~a  127 (192)
T d1m6ya2         114 ------------------------------------------------------------------NRELENLKEFLKKA  127 (192)
T ss_dssp             ------------------------------------------------------------------HTHHHHHHHHHHHG
T ss_pred             ------------------------------------------------------------------hccchhHHHHHHHH
Confidence                                                                              67899999999999


Q ss_pred             HHhhcCCCeEEEEeecchhHHHHHHHHHhhhccCCCccCCchhhhhcccccCcchhHHHHHhhCCcceeecCCCCCCCHH
Q 012954          354 FDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSAE  433 (452)
Q Consensus       354 ~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltkKpi~Ps~e  433 (452)
                      .++|+|||+++||||||+|||+||++|+++..                                  ++++++|||+||++
T Consensus       128 ~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~~~~----------------------------------~~~i~~k~I~ps~~  173 (192)
T d1m6ya2         128 EDLLNPGGRIVVISFHSLEDRIVKETFRNSKK----------------------------------LRILTEKPVRPSEE  173 (192)
T ss_dssp             GGGEEEEEEEEEEESSHHHHHHHHHHHHHCSS----------------------------------EEESCSSCBCCCHH
T ss_pred             HHhcCCCCeeeeeccccHHHHHHHHHHhhccc----------------------------------cccCCCCCcCcCHH
Confidence            99999999999999999999999999987532                                  35788999999999


Q ss_pred             HHHhCcCccccccceeEeC
Q 012954          434 EERLNCRCRSAKLRVIQKI  452 (452)
Q Consensus       434 Ei~~NpRSRSAKLRv~eK~  452 (452)
                      ||+.||||||||||||+|+
T Consensus       174 Ei~~NpRsrSaklr~~~k~  192 (192)
T d1m6ya2         174 EIRENPRARSGRLRAAERI  192 (192)
T ss_dssp             HHHHCGGGTTCEEEEEEEC
T ss_pred             HHHhCcchHhhhhheeEeC
Confidence            9999999999999999996

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-55  Score=409.04  Aligned_cols=181  Identities=44%  Similarity=0.658  Sum_probs=163.9

Q ss_pred             CccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE
Q 012954          115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT  194 (452)
Q Consensus       115 ~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l  194 (452)
                      +|+|||++||+++|. ++++++|||||+|+||||.+||++   .++|||||+||+|++.|+++.          ..++.+
T Consensus         1 tH~pVll~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~~----------~~~~~~   66 (182)
T d1wg8a2           1 THVPVLYQEALDLLA-VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGLH----------LPGLTV   66 (182)
T ss_dssp             CCCCTTHHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHTC----------CTTEEE
T ss_pred             CccchHHHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhcc----------ccceeE
Confidence            599999999999998 579999999999999999999996   368999999999999998742          137999


Q ss_pred             EccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCcccCCCCCCcccCCCCCCCCHHHHHhcCChHHHHHH
Q 012954          195 FAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRV  274 (452)
Q Consensus       195 i~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~eL~~I  274 (452)
                      ++.+|+++.+++...+    ...||||||||||||+|||++                                       
T Consensus        67 ~~~~f~~~~~~l~~~~----~~~vdgIl~DLGvSs~qld~~---------------------------------------  103 (182)
T d1wg8a2          67 VQGNFRHLKRHLAALG----VERVDGILADLGVSSFHLDDP---------------------------------------  103 (182)
T ss_dssp             EESCGGGHHHHHHHTT----CSCEEEEEEECSCCHHHHHCG---------------------------------------
T ss_pred             eehHHHHHHHHHHHcC----CCccCEEEEEccCCHHHhhcc---------------------------------------
Confidence            9999999999988765    357999999999999999976                                       


Q ss_pred             HHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCCCcCCCCCccchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 012954          275 LREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF  354 (452)
Q Consensus       275 fr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~~~~~~~~~~hpATR~FQALRI~VN~EL~~L~~~L~~a~  354 (452)
                                                                                       |+|++.++..|+.+.
T Consensus       104 -----------------------------------------------------------------~re~~~~~~~L~~~~  118 (182)
T d1wg8a2         104 -----------------------------------------------------------------SDELNALKEFLEQAA  118 (182)
T ss_dssp             -----------------------------------------------------------------GTHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------------------------hHHHHHHHHHHHHHH
Confidence                                                                             458889999999999


Q ss_pred             HhhcCCCeEEEEeecchhHHHHHHHHHhhhccCCCccCCchhhhhcccccCcchhHHHHHhhCCcceeecCCCCCCCHHH
Q 012954          355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSAEE  434 (452)
Q Consensus       355 ~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltkKpi~Ps~eE  434 (452)
                      ++|+|||+++||||||+||++||++|++..                                   ++++++|||+||++|
T Consensus       119 ~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~-----------------------------------~k~i~kK~i~~s~~E  163 (182)
T d1wg8a2         119 EVLAPGGRLVVIAFHSLEDRVVKRFLRESG-----------------------------------LKVLTKKPLVPSEKE  163 (182)
T ss_dssp             HHEEEEEEEEEEECSHHHHHHHHHHHHHHC-----------------------------------SEESCSSCBCCCHHH
T ss_pred             hhhCCCCeEEEEecccchhHHHHHHHhhcc-----------------------------------ceeccCCCcCcCHHH
Confidence            999999999999999999999999998641                                   257889999999999


Q ss_pred             HHhCcCccccccceeEeC
Q 012954          435 ERLNCRCRSAKLRVIQKI  452 (452)
Q Consensus       435 i~~NpRSRSAKLRv~eK~  452 (452)
                      |+.||||||||||+++|.
T Consensus       164 i~~Nprsrsa~lr~~~k~  181 (182)
T d1wg8a2         164 AAQNPRARSAKLRAAEKE  181 (182)
T ss_dssp             HHHCGGGGGCEEEEEECC
T ss_pred             HhhCcchHhhhheEEEEe
Confidence            999999999999999984

>d1wg8a1 a.60.13.1 (A:109-206) Putative methyltransferase TM0872, insert domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Putative methyltransferase TM0872, insert domain
family: Putative methyltransferase TM0872, insert domain
domain: Putative methyltransferase TM0872, insert domain
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-42  Score=293.29  Aligned_cols=98  Identities=37%  Similarity=0.527  Sum_probs=93.4

Q ss_pred             CCcccCCCCCCcccCCCCCCCCHHHHHhcCChHHHHHHHHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCC
Q 012954          237 RGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPG  316 (452)
Q Consensus       237 RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~eL~~Ifr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~  316 (452)
                      |||||+.|||||||||++ ++||+||||+||++||++||++||||++|++||++||++|+.+||.||.||+++|..++|.
T Consensus         1 RGFSf~~~gpLDMRmd~~-~~tA~~iln~~~~~eL~~if~~yGee~~a~~iA~~Iv~~R~~~~i~tT~dL~~ii~~~~~~   79 (98)
T d1wg8a1           1 RGFSYQKEGPLDMRMGLE-GPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIVRKAVGF   79 (98)
T ss_dssp             GCCCSSSCCBSCCCSSSC-SCCHHHHHHHSCHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHSCCCBHHHHHHHHHHHHCC
T ss_pred             CCCCcCCCCCCCCCCCCC-CCCHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhcCC
Confidence            899999999999999965 7899999999999999999999999999999999999999999999999999999999985


Q ss_pred             CcCCCCCccchhHHHHHHHHHHHH
Q 012954          317 MRGRRQGWIKTATRVFQALRIAVN  340 (452)
Q Consensus       317 ~~~~~~~~~hpATR~FQALRI~VN  340 (452)
                      .     .++||||||||||||+||
T Consensus        80 ~-----~~~~~atrvFQALRI~VN   98 (98)
T d1wg8a1          80 R-----RAGHPARKTFQALRIYVN   98 (98)
T ss_dssp             C-----SSSCTTHHHHHHHHHHHT
T ss_pred             C-----CCCChHHHHHHHHHheeC
Confidence            3     346999999999999999

>d1m6ya1 a.60.13.1 (A:115-215) Putative methyltransferase TM0872, insert domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Putative methyltransferase TM0872, insert domain
family: Putative methyltransferase TM0872, insert domain
domain: Putative methyltransferase TM0872, insert domain
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.2e-41  Score=284.23  Aligned_cols=100  Identities=39%  Similarity=0.607  Sum_probs=92.5

Q ss_pred             CCCcccCCCCCCcccCCCCCCCCHHHHHhcCChHHHHHHHHHhCCCc-chHHHHHHHHHHHhhCCCCcHHHHHHHHHhhC
Q 012954          236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEES-NWHLLQNKIVQARLRGGLHSTGELVDLIQSVT  314 (452)
Q Consensus       236 ~RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~eL~~Ifr~YGEE~-~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~  314 (452)
                      +|||||+.|||||||||+++++||+||||+||+++|.+||++||||+ +|++||++|++.|   ||.||.||+++|..++
T Consensus         1 dRGFSf~~~gpLDMRmd~~~~~sA~~~ln~~~~~~L~~Il~~yGee~~~a~~ia~~Iv~~R---~i~tt~~L~~~i~~~~   77 (101)
T d1m6ya1           1 NRGFTFEREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENR---PLNTTLDLVKAVREAL   77 (101)
T ss_dssp             CSCSSSSSCCBSCCCSSTTSSCCHHHHHHHSCHHHHHHHHHHTTCCTTTHHHHHHHHHHTC---SCCBHHHHHHHHHHHS
T ss_pred             CCCCCcCCCCCCCCCCCCCCCcCHHHHHhhhhHHHHHHHHHHhccchhhhHHHHHHHHHhc---ccccHHHHHHHHHHHc
Confidence            59999999999999999999999999999999999999999999997 5999999999876   8999999999999999


Q ss_pred             CCCcCCCCCccchhHHHHHHHHHHH
Q 012954          315 PGMRGRRQGWIKTATRVFQALRIAV  339 (452)
Q Consensus       315 p~~~~~~~~~~hpATR~FQALRI~V  339 (452)
                      |.. ..++.++||||||||||||+|
T Consensus        78 ~~~-~~~~~~~h~atr~FQALRI~V  101 (101)
T d1m6ya1          78 PSY-EIRRRKRHFATKTFQAIRIYV  101 (101)
T ss_dssp             CHH-HHHHCSSCTTHHHHHHHHHHH
T ss_pred             chh-hhcCCCCChhhHHhhhheeeC
Confidence            864 223456899999999999998

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.15  E-value=1.8e-05  Score=70.03  Aligned_cols=87  Identities=8%  Similarity=0.051  Sum_probs=64.3

Q ss_pred             HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH
Q 012954          123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI  202 (452)
Q Consensus       123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i  202 (452)
                      -+++.|. ..+++.++|...|.|.-+.++++..+   .|+|+|.|+.|++.|+++++..+..    ..++++++++... 
T Consensus        43 lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~----~~~i~~~~~d~~~-  113 (194)
T d1dusa_          43 ILVENVV-VDKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLD----NYDIRVVHSDLYE-  113 (194)
T ss_dssp             HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCT----TSCEEEEECSTTT-
T ss_pred             HHHHhCC-cCCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCc----cceEEEEEcchhh-
Confidence            3567776 46889999999999988887776543   5899999999999999988765432    2367888777532 


Q ss_pred             HHHHhhhcccccccCccEEEEccCC
Q 012954          203 KSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       203 ~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                        .+.       ...+|.|++|--+
T Consensus       114 --~~~-------~~~fD~Ii~~~p~  129 (194)
T d1dusa_         114 --NVK-------DRKYNKIITNPPI  129 (194)
T ss_dssp             --TCT-------TSCEEEEEECCCS
T ss_pred             --hhc-------cCCceEEEEcccE
Confidence              111       2469999997544

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.5e-06  Score=81.65  Aligned_cols=93  Identities=14%  Similarity=0.081  Sum_probs=73.9

Q ss_pred             HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHH
Q 012954          124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIK  203 (452)
Q Consensus       124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~  203 (452)
                      +...|. +++|..++|++.|-||.|..|.+.+.+.++|+|+|+++.-++..+++++.++.      .++.+++.++..+.
T Consensus        86 ~~~~L~-~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~------~~~~~~~~d~~~~~  158 (293)
T d2b9ea1          86 PAMLLD-PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVS  158 (293)
T ss_dssp             HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSC
T ss_pred             cccccC-CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc------cceeeeehhhhhhc
Confidence            344565 57899999999999999999999888788999999999999999999998864      36888888887654


Q ss_pred             HHHhhhcccccccCccEEEEccCCCc
Q 012954          204 SVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       204 ~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      .....      ...+|.||+|==+|+
T Consensus       159 ~~~~~------~~~fD~VL~DaPCSg  178 (293)
T d2b9ea1         159 PSDPR------YHEVHYILLDPSCSG  178 (293)
T ss_dssp             TTCGG------GTTEEEEEECCCCCC
T ss_pred             ccccc------cceeeEEeecCcccc
Confidence            33222      246999999954444

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=4.4e-06  Score=81.41  Aligned_cols=109  Identities=12%  Similarity=0.128  Sum_probs=78.5

Q ss_pred             hhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccC----
Q 012954          109 IQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHG----  184 (452)
Q Consensus       109 ~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~----  184 (452)
                      +.+....=+|==..-++..|. .+||..++|+-.|.|+.|.+|+...++.|+|+++|++++.++.|+++++.++..    
T Consensus        75 ~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~  153 (324)
T d2b25a1          75 MKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLS  153 (324)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhh
Confidence            334444446666778889997 689999999999999999999999877789999999999999999998875321    


Q ss_pred             -CCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          185 -QAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       185 -~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                       .+....++.+++.++.+...-+.       ...+|.|++|+
T Consensus       154 ~~~~~~~nv~~~~~di~~~~~~~~-------~~~fD~V~LD~  188 (324)
T d2b25a1         154 HVEEWPDNVDFIHKDISGATEDIK-------SLTFDAVALDM  188 (324)
T ss_dssp             CSSCCCCCEEEEESCTTCCC--------------EEEEEECS
T ss_pred             hhhccccceeEEecchhhcccccC-------CCCcceEeecC
Confidence             01123478888887765322221       23589998764

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.00  E-value=7.7e-06  Score=77.65  Aligned_cols=95  Identities=12%  Similarity=0.142  Sum_probs=74.6

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      |==..-++..|. .+||..++|+=.|.|..|.+|+..+++.|+|+++|++++.++.|+++++.+...   ...++.+++.
T Consensus        82 pkD~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~---~~~nv~~~~~  157 (264)
T d1i9ga_          82 PKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ---PPDNWRLVVS  157 (264)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS---CCTTEEEECS
T ss_pred             hHHHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC---CCceEEEEec
Confidence            333566788886 679999999999999999999999877789999999999999999998876421   1347888888


Q ss_pred             CcchHHHHHhhhcccccccCccEEEEcc
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +..+.     .    +....+|+|++|+
T Consensus       158 d~~~~-----~----~~~~~fDaV~ldl  176 (264)
T d1i9ga_         158 DLADS-----E----LPDGSVDRAVLDM  176 (264)
T ss_dssp             CGGGC-----C----CCTTCEEEEEEES
T ss_pred             ccccc-----c----ccCCCcceEEEec
Confidence            77642     1    1134699998763

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.99  E-value=3.9e-05  Score=73.90  Aligned_cols=91  Identities=14%  Similarity=0.087  Sum_probs=67.8

Q ss_pred             HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH
Q 012954          123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI  202 (452)
Q Consensus       123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i  202 (452)
                      ..+..+.  +++..++|+..|.||-|..++.. + .+.|+++|+++.|++.|+++++..+.     ..++++++++.-..
T Consensus       137 ~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~-g-a~~V~~vD~s~~al~~a~~N~~~ngl-----~~~~~~~~~d~~~~  207 (324)
T d2as0a2         137 LALEKWV--QPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGV-----EDRMKFIVGSAFEE  207 (324)
T ss_dssp             HHHGGGC--CTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHH
T ss_pred             HHHHhhc--CCCCeeecccCcccchhhhhhhc-C-CcEEEeecCCHHHHHHHHHHHHHcCC-----Cccceeeechhhhh
Confidence            3445543  57899999999999999998865 3 24799999999999999998877654     24788888875443


Q ss_pred             HHHHhhhcccccccCccEEEEccCC
Q 012954          203 KSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       203 ~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ...+...+     ..+|.|++|--.
T Consensus       208 ~~~~~~~~-----~~fD~Vi~DpP~  227 (324)
T d2as0a2         208 MEKLQKKG-----EKFDIVVLDPPA  227 (324)
T ss_dssp             HHHHHHTT-----CCEEEEEECCCC
T ss_pred             hHHHHhcc-----CCCCchhcCCcc
Confidence            33333222     369999999665

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.96  E-value=1.2e-05  Score=70.78  Aligned_cols=82  Identities=12%  Similarity=0.127  Sum_probs=64.7

Q ss_pred             HhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH
Q 012954          125 LDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS  204 (452)
Q Consensus       125 l~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~  204 (452)
                      +..|. +.++.+++|.=.|.|++|.+++...   ++|+|+|+|+++++.|+++++.++.     ..++++++++..++  
T Consensus        26 l~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~gl-----~~~v~~~~gda~~~--   94 (186)
T d1l3ia_          26 MCLAE-PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGL-----GDNVTLMEGDAPEA--   94 (186)
T ss_dssp             HHHHC-CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC-----CTTEEEEESCHHHH--
T ss_pred             HHhcC-CCCCCEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcCC-----CcceEEEECchhhc--
Confidence            44555 5799999999999999999987643   4799999999999999999988764     24899999886543  


Q ss_pred             HHhhhcccccccCccEEEEc
Q 012954          205 VLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       205 ~L~~~~~~l~~~~VDGILfD  224 (452)
                       +..      ...+|.|+++
T Consensus        95 -~~~------~~~~D~v~~~  107 (186)
T d1l3ia_          95 -LCK------IPDIDIAVVG  107 (186)
T ss_dssp             -HTT------SCCEEEEEES
T ss_pred             -ccc------cCCcCEEEEe
Confidence             222      2369999875

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.89  E-value=2e-05  Score=74.13  Aligned_cols=101  Identities=16%  Similarity=0.138  Sum_probs=68.7

Q ss_pred             hcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCC
Q 012954          110 QQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPH  189 (452)
Q Consensus       110 ~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~  189 (452)
                      .+....=+|-=..-++..+. .+||..++|+-.|.|+-|.+|++..++.++|+++|++++.++.|+++++.+..     .
T Consensus        63 ~r~~qiiypkD~~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~-----~  136 (250)
T d1yb2a1          63 RRNTQIISEIDASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----I  136 (250)
T ss_dssp             ------------------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----C
T ss_pred             CCCCcccCHHHHHHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC-----C
Confidence            33344445655666788886 67999999999999999999999877778999999999999999999988743     2


Q ss_pred             ceEEEEccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954          190 LKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       190 ~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      .++++.+.++.+.   +.       ...+|.|++|+.
T Consensus       137 ~nv~~~~~Di~~~---~~-------~~~fD~V~ld~p  163 (250)
T d1yb2a1         137 GNVRTSRSDIADF---IS-------DQMYDAVIADIP  163 (250)
T ss_dssp             TTEEEECSCTTTC---CC-------SCCEEEEEECCS
T ss_pred             CceEEEEeeeecc---cc-------cceeeeeeecCC
Confidence            4788888877542   22       246999998853

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.89  E-value=1.8e-05  Score=71.92  Aligned_cols=95  Identities=13%  Similarity=0.090  Sum_probs=74.3

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      .|-|+..+++.|. .+++..++|.-.|.|..|..|.+.+++.++|+++|+|++.++.|+++++..+.      .++.+++
T Consensus        60 ~P~~~a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~------~n~~~~~  132 (213)
T d1dl5a1          60 QPSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFVC  132 (213)
T ss_dssp             CHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEE
T ss_pred             cchhhHHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc------ccccccc
Confidence            3778889999997 68999999999999977776666677778999999999999999999987654      3677777


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ++..+.   +..      ...+|.|+.+-++
T Consensus       133 ~d~~~~---~~~------~~~fD~I~~~~~~  154 (213)
T d1dl5a1         133 GDGYYG---VPE------FSPYDVIFVTVGV  154 (213)
T ss_dssp             SCGGGC---CGG------GCCEEEEEECSBB
T ss_pred             CchHHc---ccc------ccchhhhhhhccH
Confidence            765432   111      2369999986554

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.76  E-value=6.7e-05  Score=70.71  Aligned_cols=97  Identities=11%  Similarity=0.091  Sum_probs=75.8

Q ss_pred             CCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954          114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       114 ~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      ..=+|=-..=++..|. .+||..++|+-.|.|+-|..|++..++.|+|+++|++++.++.|+++++.++.     ..++.
T Consensus        85 qiiypkd~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~-----~~~v~  158 (266)
T d1o54a_          85 QIVYPKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----IERVT  158 (266)
T ss_dssp             CCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----GGGEE
T ss_pred             cccchHHHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc-----ccCcE
Confidence            3344545556788887 68999999999999999999999987778999999999999999999988764     24677


Q ss_pred             EEccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954          194 TFAKNFRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       194 li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      +.+.+...      ..    ....+|.|++|+.
T Consensus       159 ~~~~d~~~------~~----~~~~~D~V~~d~p  181 (266)
T d1o54a_         159 IKVRDISE------GF----DEKDVDALFLDVP  181 (266)
T ss_dssp             EECCCGGG------CC----SCCSEEEEEECCS
T ss_pred             EEeccccc------cc----cccceeeeEecCC
Confidence            77766432      11    1246999998864

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.74  E-value=0.00021  Score=68.88  Aligned_cols=81  Identities=16%  Similarity=0.089  Sum_probs=60.2

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC-cchHHHHHhhhc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN-FRHIKSVLGQID  210 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n-F~~i~~~L~~~~  210 (452)
                      .+|..++|+..|.||-|.+.+..  ....|+++|.++.|++.|+++++..+.+    ..++++++++ |..|.....+  
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~~a~~~a~~N~~~n~l~----~~~~~~i~~d~~~~l~~~~~~--  214 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLD----MANHQLVVMDVFDYFKYARRH--  214 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCC----CTTEEEEESCHHHHHHHHHHT--
T ss_pred             hCCCceeecCCCCcHHHHHHHhC--CCceEEEecCCHHHHHHHHHHHHHhccc----CcceEEEEccHHHHHHHHHhh--
Confidence            36889999999999999876643  2346999999999999999988765432    2367788766 4555444332  


Q ss_pred             ccccccCccEEEEc
Q 012954          211 ENILRSGVDAILMD  224 (452)
Q Consensus       211 ~~l~~~~VDGILfD  224 (452)
                          ...+|.|++|
T Consensus       215 ----~~~fD~Ii~D  224 (317)
T d2b78a2         215 ----HLTYDIIIID  224 (317)
T ss_dssp             ----TCCEEEEEEC
T ss_pred             ----cCCCCEEEEc
Confidence                1369999999

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.65  E-value=9.9e-05  Score=70.96  Aligned_cols=82  Identities=15%  Similarity=0.069  Sum_probs=62.5

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      .|..++|+..|.||-|.++...   ...|+++|.++.|++.|+++++..+.      .++.+++.+-....+.+...+  
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl------~~~~~i~~d~~~~~~~~~~~~--  213 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLRRLEKEG--  213 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHHHHHHTT--
T ss_pred             CCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCC------CCcceeeccHHHHhhhhHhhh--
Confidence            6789999999999999887643   34799999999999999998877653      257777777554444443322  


Q ss_pred             ccccCccEEEEccCCC
Q 012954          213 ILRSGVDAILMDLGMS  228 (452)
Q Consensus       213 l~~~~VDGILfDLGvS  228 (452)
                         ..+|.|++|--.+
T Consensus       214 ---~~fD~Vi~DpP~~  226 (318)
T d1wxxa2         214 ---ERFDLVVLDPPAF  226 (318)
T ss_dssp             ---CCEEEEEECCCCS
T ss_pred             ---cCCCEEEEcCCcc
Confidence               4799999997654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.61  E-value=0.00022  Score=66.72  Aligned_cols=84  Identities=19%  Similarity=0.211  Sum_probs=58.3

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .||..+.+.+   +++..++|.-+|.|.-+.++. +.+  .+|+|+|+|+.|++.|+++.+..+.       +..+++++
T Consensus       109 l~l~~l~~~~---~~g~~VLDiGcGsG~l~i~aa-~~g--~~V~gvDis~~av~~A~~na~~n~~-------~~~~~~~d  175 (254)
T d2nxca1         109 LALKALARHL---RPGDKVLDLGTGSGVLAIAAE-KLG--GKALGVDIDPMVLPQAEANAKRNGV-------RPRFLEGS  175 (254)
T ss_dssp             HHHHHHHHHC---CTTCEEEEETCTTSHHHHHHH-HTT--CEEEEEESCGGGHHHHHHHHHHTTC-------CCEEEESC
T ss_pred             HHHHHHHhhc---CccCEEEEcccchhHHHHHHH-hcC--CEEEEEECChHHHHHHHHHHHHcCC-------ceeEEecc
Confidence            4444443333   488999999999997766544 554  3699999999999999998876533       34556665


Q ss_pred             cchHHHHHhhhcccccccCccEEEEcc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ..   ..+.       ...+|.|+.++
T Consensus       176 ~~---~~~~-------~~~fD~V~ani  192 (254)
T d2nxca1         176 LE---AALP-------FGPFDLLVANL  192 (254)
T ss_dssp             HH---HHGG-------GCCEEEEEEEC
T ss_pred             cc---cccc-------ccccchhhhcc
Confidence            43   2222       24799999874

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.57  E-value=5.4e-05  Score=69.88  Aligned_cols=86  Identities=13%  Similarity=0.089  Sum_probs=64.2

Q ss_pred             HhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH
Q 012954          125 LDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS  204 (452)
Q Consensus       125 l~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~  204 (452)
                      ++.|. ++||..++|..+|.|+-+..+.+..++.|+|||+|+++.+++.++++.+...        +...++.+......
T Consensus        66 l~~l~-i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--------~~~~i~~d~~~~~~  136 (227)
T d1g8aa_          66 LKNFP-IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--------NIVPILGDATKPEE  136 (227)
T ss_dssp             CCCCC-CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--------TEEEEECCTTCGGG
T ss_pred             ccccc-cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--------CceEEEEECCCccc
Confidence            34454 5799999999999998888888888888999999999999999998776532        34455555544433


Q ss_pred             HHhhhcccccccCccEEEEcc
Q 012954          205 VLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       205 ~L~~~~~~l~~~~VDGILfDL  225 (452)
                      +...      ...+|.|+.|+
T Consensus       137 ~~~~------~~~vD~i~~d~  151 (227)
T d1g8aa_         137 YRAL------VPKVDVIFEDV  151 (227)
T ss_dssp             GTTT------CCCEEEEEECC
T ss_pred             cccc------ccceEEEEEEc
Confidence            3221      24699999885

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.56  E-value=0.00022  Score=61.01  Aligned_cols=87  Identities=9%  Similarity=0.069  Sum_probs=66.4

Q ss_pred             hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH
Q 012954          126 DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV  205 (452)
Q Consensus       126 ~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~  205 (452)
                      ..|...-.|..++|+-.|.|+=+.+.|.+-.  .+|+++|.|+.|++.+++.++.++.     ..++++++++-..   +
T Consensus         7 n~l~~~~~g~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~-----~~~~~ii~~D~~~---~   76 (152)
T d2esra1           7 NMIGPYFNGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKA-----ENRFTLLKMEAER---A   76 (152)
T ss_dssp             HHHCSCCCSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTC-----GGGEEEECSCHHH---H
T ss_pred             HHHHhhCCCCeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhccc-----ccchhhhcccccc---c
Confidence            6665323688999999999998888777632  4799999999999999999987754     3579999987543   3


Q ss_pred             HhhhcccccccCccEEEEccCC
Q 012954          206 LGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       206 L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      ++..     ...+|.|++|--|
T Consensus        77 l~~~-----~~~fDiIf~DPPy   93 (152)
T d2esra1          77 IDCL-----TGRFDLVFLDPPY   93 (152)
T ss_dssp             HHHB-----CSCEEEEEECCSS
T ss_pred             cccc-----ccccceeEechhh
Confidence            3322     2479999999765

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.52  E-value=0.00014  Score=69.84  Aligned_cols=89  Identities=20%  Similarity=0.235  Sum_probs=72.1

Q ss_pred             hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH
Q 012954          126 DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV  205 (452)
Q Consensus       126 ~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~  205 (452)
                      ..|. +++|..++|++.|-||-|..|.+...+.+.++|+|+++.=+...+++++.++.      .++.+++..+..++  
T Consensus       110 ~~l~-~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~------~~i~~~~~d~~~~~--  180 (313)
T d1ixka_         110 VALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLHIG--  180 (313)
T ss_dssp             HHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGGGG--
T ss_pred             hccc-CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh------hccccccccccccc--
Confidence            3444 57999999999999999999999988888999999999999999988888764      25677777766542  


Q ss_pred             HhhhcccccccCccEEEEccCCCcc
Q 012954          206 LGQIDENILRSGVDAILMDLGMSSM  230 (452)
Q Consensus       206 L~~~~~~l~~~~VDGILfDLGvSS~  230 (452)
                        ..     ...+|.||+|-=+|+.
T Consensus       181 --~~-----~~~fD~ILvDaPCSg~  198 (313)
T d1ixka_         181 --EL-----NVEFDKILLDAPCTGS  198 (313)
T ss_dssp             --GG-----CCCEEEEEEECCTTST
T ss_pred             --cc-----cccccEEEEccccccC
Confidence              11     2369999999988863

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=97.51  E-value=0.00014  Score=64.15  Aligned_cols=97  Identities=13%  Similarity=0.174  Sum_probs=74.7

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      +.++++.+. .+++..++|.=+|.|..|..+++..   .+|+|+|.++.+++.|+++++..+.      .++++++++..
T Consensus         4 ~~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~------~~i~~~~~d~~   73 (231)
T d1vl5a_           4 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDAE   73 (231)
T ss_dssp             HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC-
T ss_pred             HHHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhccccccc------ccccccccccc
Confidence            567888886 6789999999999999999988764   3699999999999999998877543      37888888887


Q ss_pred             hHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCC
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERG  238 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RG  238 (452)
                      ++.  +       ..+.+|.|+.-..+  ++++|++..
T Consensus        74 ~l~--~-------~~~~fD~v~~~~~l--~~~~d~~~~  100 (231)
T d1vl5a_          74 QMP--F-------TDERFHIVTCRIAA--HHFPNPASF  100 (231)
T ss_dssp             CCC--S-------CTTCEEEEEEESCG--GGCSCHHHH
T ss_pred             ccc--c-------cccccccccccccc--cccCCHHHH
Confidence            652  1       12469999887644  566666543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00028  Score=66.74  Aligned_cols=110  Identities=18%  Similarity=0.211  Sum_probs=78.8

Q ss_pred             CccCCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954           99 SNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL  178 (452)
Q Consensus        99 ~~~~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL  178 (452)
                      .-..|..+.+..|+...=.||+      .|. ++++..++|++.|-||.|.+|++...+ +.|+|+|+++.=+...++++
T Consensus        75 ~~~~~~~G~~~vQD~sS~l~~~------~L~-~~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~  146 (284)
T d1sqga2          75 ALPGFEDGWVTVQDASAQGCMT------WLA-PQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNL  146 (284)
T ss_dssp             GSTTGGGTSEEECCHHHHTHHH------HHC-CCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHH
T ss_pred             hChhhhccEEEecccccccccc------ccC-ccccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhh
Confidence            3345666655555555444443      454 578999999999999999999987665 78999999999999999999


Q ss_pred             hhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCcc
Q 012954          179 NSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSM  230 (452)
Q Consensus       179 ~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~  230 (452)
                      +.++.+      ............... .       ...+|.||+|==+|+.
T Consensus       147 ~r~g~~------~~~~~~~~~~~~~~~-~-------~~~fd~IL~DaPCSg~  184 (284)
T d1sqga2         147 KRLGMK------ATVKQGDGRYPSQWC-G-------EQQFDRILLDAPCSAT  184 (284)
T ss_dssp             HHTTCC------CEEEECCTTCTHHHH-T-------TCCEEEEEEECCCCCG
T ss_pred             hccccc------ceeeeccccccchhc-c-------cccccEEEEecccccc
Confidence            888652      344445444332211 1       2369999999988874

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00041  Score=62.57  Aligned_cols=104  Identities=14%  Similarity=0.103  Sum_probs=75.4

Q ss_pred             CCCcccc---chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCC
Q 012954          113 QSSHIPV---MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPH  189 (452)
Q Consensus       113 ~~~H~PV---Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~  189 (452)
                      |-.|-|.   ++..+.+.|. ..|+..++|.=+|.|+++..+++..+  .+|+|+|.++.+++.|+++....+.     .
T Consensus        11 h~~~~p~~~~~~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl-----~   82 (245)
T d1nkva_          11 HRIHNPFTEEKYATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGV-----S   82 (245)
T ss_dssp             CSSSSSCCHHHHHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTC-----T
T ss_pred             ccccCCCCHHHHHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhc-----c
Confidence            3334444   6777888886 57999999999999999999888765  3699999999999999998877654     2


Q ss_pred             ceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCCC
Q 012954          190 LKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPE  236 (452)
Q Consensus       190 ~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~  236 (452)
                      ++++++++++..+   ..       ...+|.|+.=.  +.+++.|+.
T Consensus        83 ~~v~~~~~d~~~~---~~-------~~~fD~v~~~~--~~~~~~d~~  117 (245)
T d1nkva_          83 ERVHFIHNDAAGY---VA-------NEKCDVAACVG--ATWIAGGFA  117 (245)
T ss_dssp             TTEEEEESCCTTC---CC-------SSCEEEEEEES--CGGGTSSSH
T ss_pred             ccchhhhhHHhhc---cc-------cCceeEEEEEe--hhhccCCHH
Confidence            4788888887653   11       13577766543  234554444

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.40  E-value=0.00016  Score=64.52  Aligned_cols=81  Identities=11%  Similarity=0.146  Sum_probs=59.5

Q ss_pred             ccccchHHHHhhccC-CCCCCEEEEEccCCChhHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954          116 HIPVMLGEVLDVFSS-SRTITSFVDCTLGAAGHSSAIIRAHP-ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       116 H~PVLl~Evl~~L~~-~~~ggiyVDaTlG~GGHS~aIL~~~p-~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      .++.|++-+...+.. .+|++.++|.-+|.|.++..|++.+. +..+|+|+|..+.+++.|+++++.+..     ..+++
T Consensus        21 ~Y~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~-----~~~~~   95 (225)
T d1im8a_          21 GYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVE   95 (225)
T ss_dssp             THHHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC-----SSCEE
T ss_pred             CHHHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc-----cchhh
Confidence            455666555544331 24789999999999999999998753 345799999999999999999887643     23566


Q ss_pred             EEccCcch
Q 012954          194 TFAKNFRH  201 (452)
Q Consensus       194 li~~nF~~  201 (452)
                      ++++++.+
T Consensus        96 ~~~~d~~~  103 (225)
T d1im8a_          96 ILCNDIRH  103 (225)
T ss_dssp             EECSCTTT
T ss_pred             hccchhhc
Confidence            66665543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=97.35  E-value=0.00025  Score=65.53  Aligned_cols=98  Identities=11%  Similarity=-0.008  Sum_probs=71.5

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      |++++..... ..++..++|.=+|.|+++..+.++++  ..|+|+|.++..++.|+++....+.     ..+++++++++
T Consensus        55 ~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~~gl-----~~~v~~~~~d~  126 (282)
T d2o57a1          55 LASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVKYGSF  126 (282)
T ss_dssp             HHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEEECCT
T ss_pred             HHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEeccchhhhhhhcccccccc-----ccccccccccc
Confidence            3444444443 46889999999999999999888764  3699999999999999998877654     24789999998


Q ss_pred             chHHHHHhhhcccccccCccEEEEccCCCccCCCCCC
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPE  236 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~  236 (452)
                      .++.         +....+|.|+.--  +.+++.++.
T Consensus       127 ~~l~---------~~~~sfD~V~~~~--~l~h~~d~~  152 (282)
T d2o57a1         127 LEIP---------CEDNSYDFIWSQD--AFLHSPDKL  152 (282)
T ss_dssp             TSCS---------SCTTCEEEEEEES--CGGGCSCHH
T ss_pred             cccc---------ccccccchhhccc--hhhhccCHH
Confidence            7752         1124699987642  234555443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.28  E-value=0.00047  Score=61.81  Aligned_cols=74  Identities=22%  Similarity=0.192  Sum_probs=57.8

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      .|..++|..+|.|+-+.+.+.. +. .+|+|+|+|+.|++.|+++++.++.       +..++..+...+          
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~-g~-~~v~~vdi~~~~~~~a~~N~~~~~~-------~~~~~~~d~~~~----------  106 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLL-GA-KEVICVEVDKEAVDVLIENLGEFKG-------KFKVFIGDVSEF----------  106 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHTGGGTT-------SEEEEESCGGGC----------
T ss_pred             CCCEEEECcCcchHHHHHHHHc-CC-CEEEEEcCcHHHHHHHHHHHHHcCC-------CceEEECchhhh----------
Confidence            6789999999999998887754 33 4799999999999999998877643       566676665432          


Q ss_pred             ccccCccEEEEccCC
Q 012954          213 ILRSGVDAILMDLGM  227 (452)
Q Consensus       213 l~~~~VDGILfDLGv  227 (452)
                        ...+|.|+.|-=|
T Consensus       107 --~~~fD~Vi~nPP~  119 (201)
T d1wy7a1         107 --NSRVDIVIMNPPF  119 (201)
T ss_dssp             --CCCCSEEEECCCC
T ss_pred             --CCcCcEEEEcCcc
Confidence              2469999988665

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.24  E-value=0.00076  Score=59.59  Aligned_cols=94  Identities=12%  Similarity=0.064  Sum_probs=68.4

Q ss_pred             chHHHH-hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          120 MLGEVL-DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       120 Ll~Evl-~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .++|.+ +.|....+|..++|+-.|.|+=+.+.|++-.  ..|+++|.|+.|++.+++.++..+.     ..++++++.+
T Consensus        27 ~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~-----~~~~~i~~~D   99 (182)
T d2fhpa1          27 KVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKE-----PEKFEVRKMD   99 (182)
T ss_dssp             HHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhc-----cccccccccc
Confidence            466655 6665334788999999999999999998732  4699999999999999999887654     3478888877


Q ss_pred             cchHHHHHhhhcccccccCccEEEEcc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ....-+.+...     ...+|.|++|=
T Consensus       100 ~~~~l~~~~~~-----~~~fDlIflDP  121 (182)
T d2fhpa1         100 ANRALEQFYEE-----KLQFDLVLLDP  121 (182)
T ss_dssp             HHHHHHHHHHT-----TCCEEEEEECC
T ss_pred             chhhhhhhccc-----CCCcceEEech
Confidence            54432222222     13699888764

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.23  E-value=0.00045  Score=62.40  Aligned_cols=81  Identities=12%  Similarity=0.021  Sum_probs=60.6

Q ss_pred             CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          131 SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       131 ~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      .+||..++|.-+|.|+-+..|.+..|+ ++|+|+|+.+.+++.++++.+..        .++.++..+-.+...+-..  
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~-g~V~gvDis~~~i~~a~~~a~~~--------~ni~~i~~d~~~~~~~~~~--  122 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRER--------NNIIPLLFDASKPWKYSGI--  122 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHC--------SSEEEECSCTTCGGGTTTT--
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccC-CeEEEEeCCHHHHHHHHHHhhcc--------CCceEEEeeccCccccccc--
Confidence            579999999999999988888887876 58999999999999998876653        2677788776654332211  


Q ss_pred             ccccccCccEEEEccC
Q 012954          211 ENILRSGVDAILMDLG  226 (452)
Q Consensus       211 ~~l~~~~VDGILfDLG  226 (452)
                          ...+|.|+.|+.
T Consensus       123 ----~~~vd~v~~~~~  134 (209)
T d1nt2a_         123 ----VEKVDLIYQDIA  134 (209)
T ss_dssp             ----CCCEEEEEECCC
T ss_pred             ----cceEEEEEeccc
Confidence                124776665653

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.19  E-value=0.00067  Score=61.50  Aligned_cols=93  Identities=12%  Similarity=0.092  Sum_probs=69.2

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +|..++....    ...+++.-.|.|.=|..|++.+++.++|+++|.|++.++.|++.++..+.     ..+++++.++.
T Consensus        47 lL~~lv~~~k----pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl-----~~~i~l~~Gd~  117 (214)
T d2cl5a1          47 IMDAVIREYS----PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL-----QDKVTILNGAS  117 (214)
T ss_dssp             HHHHHHHHHC----CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCH
T ss_pred             HHHHHHHhhC----CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC-----Cccceeeeccc
Confidence            4555555543    36999999999977777777788778999999999999999999988765     35899999988


Q ss_pred             chHHHHHhhhcccccccCccEEEEc
Q 012954          200 RHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       200 ~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      .++-.-+...   .....+|.|++|
T Consensus       118 ~e~l~~l~~~---~~~~~~D~ifiD  139 (214)
T d2cl5a1         118 QDLIPQLKKK---YDVDTLDMVFLD  139 (214)
T ss_dssp             HHHGGGHHHH---SCCCCEEEEEEC
T ss_pred             cccccchhhc---ccccccceeeec
Confidence            7653222221   113469999998

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0012  Score=63.22  Aligned_cols=85  Identities=15%  Similarity=0.074  Sum_probs=67.0

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCC---CCCCceEE
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQ---AHPHLKTH  193 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~---~~~~~r~~  193 (452)
                      .|-++.++++.+. .+++.+++|.=.|.|+++..+....+. .+++|+|+.+.+++.|++.++.+...-   .....+++
T Consensus       136 ~~~~~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~-~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~  213 (328)
T d1nw3a_         136 SFDLVAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNC-KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT  213 (328)
T ss_dssp             CHHHHHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCC-SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             HHHHHHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence            4567899999997 579999999999999999999888775 479999999999999988766542100   00123689


Q ss_pred             EEccCcchHH
Q 012954          194 TFAKNFRHIK  203 (452)
Q Consensus       194 li~~nF~~i~  203 (452)
                      +++++|.+++
T Consensus       214 ~~~gd~~~~~  223 (328)
T d1nw3a_         214 LERGDFLSEE  223 (328)
T ss_dssp             EEECCTTSHH
T ss_pred             EEECcccccc
Confidence            9999998764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00056  Score=62.38  Aligned_cols=100  Identities=13%  Similarity=0.024  Sum_probs=68.0

Q ss_pred             ccchHHHHhhcc-CCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          118 PVMLGEVLDVFS-SSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       118 PVLl~Evl~~L~-~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      |-|.-.+++.|. ..+||..++|.-.|.|.. .++|.+ .++.++|+|+|+++++++.|+++++...... ....++.++
T Consensus        60 P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~-ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~-~~~~~~~~~  137 (224)
T d1i1na_          60 PHMHAYALELLFDQLHEGAKALDVGSGSGIL-TACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTL-LSSGRVQLV  137 (224)
T ss_dssp             HHHHHHHHHHTTTTSCTTCEEEEETCTTSHH-HHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHH-HHTSSEEEE
T ss_pred             hHHHHHHHHHHhhccCCCCeEEEecCCCCHH-HHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccc-ccccceEEE
Confidence            557788888883 146899999999999944 455554 5666889999999999999999887643100 001245666


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      +++-.+.   ..+      ...+|.|+++-++.
T Consensus       138 ~gD~~~~---~~~------~~~fD~I~~~~~~~  161 (224)
T d1i1na_         138 VGDGRMG---YAE------EAPYDAIHVGAAAP  161 (224)
T ss_dssp             ESCGGGC---CGG------GCCEEEEEECSBBS
T ss_pred             Eeecccc---cch------hhhhhhhhhhcchh
Confidence            6554321   111      23699999886653

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.12  E-value=0.00089  Score=62.52  Aligned_cols=99  Identities=16%  Similarity=0.128  Sum_probs=72.8

Q ss_pred             CCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954          114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       114 ~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      .+..|-+..|-.......++|..++|+-.|.|+-|..+++. +. ++|+|+|++|.|++.++++++..+.     .++++
T Consensus        88 ~~f~~~~~~er~ri~~~~~~g~~VlD~~aG~G~~~l~~a~~-~~-~~V~avd~n~~a~~~~~~N~~~n~l-----~~~v~  160 (260)
T d2frna1          88 IMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVY-GK-AKVIAIEKDPYTFKFLVENIHLNKV-----EDRMS  160 (260)
T ss_dssp             SCCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHH-TC-CEEEEECCCHHHHHHHHHHHHHTTC-----TTTEE
T ss_pred             ccEecCCHHHHHHHHhhcCCccEEEECcceEcHHHHHHHHh-CC-cEEEEecCCHHHHHHHHHHHHHhCC-----CceEE
Confidence            34566666665444433358999999999999999998876 33 4799999999999999998876543     34799


Q ss_pred             EEccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          194 TFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       194 li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      +++++...+   +.       ...+|-|++|+=.+|
T Consensus       161 ~~~~D~~~~---~~-------~~~~D~Ii~~~p~~~  186 (260)
T d2frna1         161 AYNMDNRDF---PG-------ENIADRILMGYVVRT  186 (260)
T ss_dssp             EECSCTTTC---CC-------CSCEEEEEECCCSSG
T ss_pred             EEEcchHHh---cc-------CCCCCEEEECCCCch
Confidence            999886542   11       236899998753333

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00056  Score=61.67  Aligned_cols=83  Identities=14%  Similarity=0.089  Sum_probs=61.0

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .+|+.++|.-+|.|+.+..|++..+  ..|+|+|+++.+++.|+++.+...       .++.++..+...+   ....  
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~---~~~~--  117 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-------HKVIPLKGLWEDV---APTL--  117 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCS-------SEEEEEESCHHHH---GGGS--
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcc-------ccccccccccccc---cccc--
Confidence            4788999999999999988887543  368999999999999999876542       3566666665443   2221  


Q ss_pred             cccccCccEEEEccCCCcc
Q 012954          212 NILRSGVDAILMDLGMSSM  230 (452)
Q Consensus       212 ~l~~~~VDGILfDLGvSS~  230 (452)
                        ....+|.|+||.=.+..
T Consensus       118 --~~~~fD~i~fD~~~~~~  134 (229)
T d1zx0a1         118 --PDGHFDGILYDTYPLSE  134 (229)
T ss_dssp             --CTTCEEEEEECCCCCBG
T ss_pred             --ccccccceeeccccccc
Confidence              13479999999844443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.08  E-value=0.0016  Score=56.80  Aligned_cols=86  Identities=15%  Similarity=0.122  Sum_probs=61.1

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      .+.+++.+. ..++..++|.++|.|+=..++++..+....++|+|+|+.++..++               +..+++++|-
T Consensus         8 ~~~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---------------~~~~~~~~~~   71 (223)
T d2ih2a1           8 VDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---------------WAEGILADFL   71 (223)
T ss_dssp             HHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---------------TEEEEESCGG
T ss_pred             HHHHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---------------cceeeeeehh
Confidence            556777776 468889999999999888899888877778999999987654321               2344566553


Q ss_pred             hHHHHHhhhcccccccCccEEEEccCCCccCC
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDLGMSSMQV  232 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QL  232 (452)
                      ...          ....+|.|+.|--+...+.
T Consensus        72 ~~~----------~~~~fd~ii~npP~~~~~~   93 (223)
T d2ih2a1          72 LWE----------PGEAFDLILGNPPYGIVGE   93 (223)
T ss_dssp             GCC----------CSSCEEEEEECCCCCCBSC
T ss_pred             ccc----------cccccceecccCccccccc
Confidence            211          1236888888877765543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.07  E-value=0.0016  Score=58.66  Aligned_cols=78  Identities=12%  Similarity=0.221  Sum_probs=64.5

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++.+++|.-+|.|.++..+.+..|+. .++|+|+.+..+..|.++.+..+.      .|+.+++++...+.+.+..    
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~-~~iGiD~~~~~i~~a~~~~~~~~l------~Nv~~~~~Da~~l~~~~~~----   97 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDI-NYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADTLTDVFEP----   97 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGGHHHHCCT----
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCC-cEEEeecchHHHHHHHHHHHHHhc------cCchhcccchhhhhcccCc----
Confidence            45699999999999999999999885 699999999999999998877654      3799999998887655432    


Q ss_pred             ccccCccEEEEc
Q 012954          213 ILRSGVDAILMD  224 (452)
Q Consensus       213 l~~~~VDGILfD  224 (452)
                         ..+|.|++.
T Consensus        98 ---~~~d~v~i~  106 (204)
T d2fcaa1          98 ---GEVKRVYLN  106 (204)
T ss_dssp             ---TSCCEEEEE
T ss_pred             ---hhhhccccc
Confidence               368888763

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.04  E-value=0.00076  Score=60.06  Aligned_cols=72  Identities=15%  Similarity=0.177  Sum_probs=56.0

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      .+++++..+. ..+.+.++|.=+|.|.++..++++ +  ..|+|+|..+.+++.|+++++..+.       ++++++++.
T Consensus        29 ~~~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~-~--~~v~gvD~s~~mi~~a~~~~~~~~~-------~i~~~~~d~   97 (251)
T d1wzna1          29 FVEEIFKEDA-KREVRRVLDLACGTGIPTLELAER-G--YEVVGLDLHEEMLRVARRKAKERNL-------KIEFLQGDV   97 (251)
T ss_dssp             HHHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTTC-------CCEEEESCG
T ss_pred             HHHHHHHHhc-CCCCCEEEEeCCCCCccchhhccc-c--eEEEEEeeccccccccccccccccc-------cchheehhh
Confidence            4566676665 357789999999999998888765 2  3699999999999999998876432       567777777


Q ss_pred             chH
Q 012954          200 RHI  202 (452)
Q Consensus       200 ~~i  202 (452)
                      .++
T Consensus        98 ~~l  100 (251)
T d1wzna1          98 LEI  100 (251)
T ss_dssp             GGC
T ss_pred             hhc
Confidence            664

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00053  Score=61.02  Aligned_cols=77  Identities=14%  Similarity=0.133  Sum_probs=58.5

Q ss_pred             CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954          131 SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID  210 (452)
Q Consensus       131 ~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~  210 (452)
                      ..++..++|.=+|.|+.+..+|+..+.  .|+|+|.++.+++.|++++...+.      .+++++++++.++.  .    
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~------~~~~f~~~d~~~~~--~----  123 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCCGLQDFT--P----  123 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGG------GEEEEEECCGGGCC--C----
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccc------cccccccccccccc--c----
Confidence            346789999999999999999877653  699999999999999998766432      36778888877642  0    


Q ss_pred             ccccccCccEEEEc
Q 012954          211 ENILRSGVDAILMD  224 (452)
Q Consensus       211 ~~l~~~~VDGILfD  224 (452)
                         ....+|.|+..
T Consensus       124 ---~~~~fD~I~~~  134 (222)
T d2ex4a1         124 ---EPDSYDVIWIQ  134 (222)
T ss_dssp             ---CSSCEEEEEEE
T ss_pred             ---ccccccccccc
Confidence               12367877654

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00068  Score=64.68  Aligned_cols=93  Identities=14%  Similarity=0.177  Sum_probs=68.8

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      ...|++++++++. ..++..++|+=.|.|.-|..+.++.   ++|+|+|.+++|++.|++..+..+.      .++.+++
T Consensus       197 ~e~l~~~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i------~n~~~~~  266 (358)
T d1uwva2         197 NQKMVARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGL------QNVTFYH  266 (358)
T ss_dssp             HHHHHHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEE
T ss_pred             hhHHHHHHHHhhc-cCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhccc------ccceeee
Confidence            5679999999997 4678899999999999999887653   5799999999999999988766543      3678887


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEc
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ++..........     ....+|.|++|
T Consensus       267 ~~~~~~~~~~~~-----~~~~~d~vilD  289 (358)
T d1uwva2         267 ENLEEDVTKQPW-----AKNGFDKVLLD  289 (358)
T ss_dssp             CCTTSCCSSSGG-----GTTCCSEEEEC
T ss_pred             cchhhhhhhhhh-----hhccCceEEeC
Confidence            765432111111     12357877775

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=96.98  E-value=0.001  Score=61.78  Aligned_cols=99  Identities=16%  Similarity=0.170  Sum_probs=71.1

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ++.+++.+........++|.-+|.|..+..+++.++...+|+|+|.++.+++.|++++...+       .++++++.++.
T Consensus        15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~-------~~~~f~~~d~~   87 (281)
T d2gh1a1          15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-------YDSEFLEGDAT   87 (281)
T ss_dssp             HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS-------SEEEEEESCTT
T ss_pred             HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc-------ccccccccccc
Confidence            44455444223355789999999998888888878877789999999999999999887643       26778888776


Q ss_pred             hHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCC
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERG  238 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RG  238 (452)
                      ++.     .     ...+|.|+....  -+++.++.+.
T Consensus        88 ~~~-----~-----~~~fD~v~~~~~--l~~~~d~~~~  113 (281)
T d2gh1a1          88 EIE-----L-----NDKYDIAICHAF--LLHMTTPETM  113 (281)
T ss_dssp             TCC-----C-----SSCEEEEEEESC--GGGCSSHHHH
T ss_pred             ccc-----c-----cCCceEEEEehh--hhcCCCHHHH
Confidence            542     1     136888887653  3566666544

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=96.94  E-value=0.0022  Score=55.82  Aligned_cols=93  Identities=15%  Similarity=0.079  Sum_probs=60.9

Q ss_pred             cccchHHHHh-hcc-CCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE
Q 012954          117 IPVMLGEVLD-VFS-SSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT  194 (452)
Q Consensus       117 ~PVLl~Evl~-~L~-~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l  194 (452)
                      +|-++.|.+- +|. ....++.++|+..|.|+-+.+.+++ +  ..++++|+|+.|++.+++.++.++..     .++. 
T Consensus        23 t~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~-g--a~vv~vD~~~~a~~~~~~N~~~~~~~-----~~v~-   93 (171)
T d1ws6a1          23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE-G--WEAVLVEKDPEAVRLLKENVRRTGLG-----ARVV-   93 (171)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT-T--CEEEEECCCHHHHHHHHHHHHHHTCC-----CEEE-
T ss_pred             CcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhc-c--chhhhcccCHHHHhhhhHHHHhhccc-----ccee-
Confidence            4556777663 332 1136789999999999988877765 2  35789999999999999998887542     2443 


Q ss_pred             EccCcchHHHHHhhhcccccccCccEEEEc
Q 012954          195 FAKNFRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       195 i~~nF~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                       ..+-..........     ...+|.|++|
T Consensus        94 -~~~~d~~~~~~~~~-----~~~fD~If~D  117 (171)
T d1ws6a1          94 -ALPVEVFLPEAKAQ-----GERFTVAFMA  117 (171)
T ss_dssp             -CSCHHHHHHHHHHT-----TCCEEEEEEC
T ss_pred             -eeehhccccccccc-----CCccceeEEc
Confidence             22222211111211     2469999988

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.92  E-value=0.00074  Score=61.63  Aligned_cols=96  Identities=14%  Similarity=0.175  Sum_probs=75.2

Q ss_pred             ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954          116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF  195 (452)
Q Consensus       116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li  195 (452)
                      =-|-|+--+++.|. .+++..++|.-.|.| +..++|.++-. ++|+++|+|++.++.|+++++.++.      .++.++
T Consensus        62 s~P~~~a~ml~~L~-l~~g~~VLeIGsGsG-Y~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~------~nv~~~  132 (215)
T d1jg1a_          62 SAPHMVAIMLEIAN-LKPGMNILEVGTGSG-WNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGV------KNVHVI  132 (215)
T ss_dssp             CCHHHHHHHHHHHT-CCTTCCEEEECCTTS-HHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTC------CSEEEE
T ss_pred             hhhhhHHHHHHhhc-cCccceEEEecCCCC-hhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCC------ceeEEE
Confidence            34678889999997 679999999999999 77778887533 4699999999999999999998754      378888


Q ss_pred             ccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      +++-.+-   +..      ...+|.|++.-++.+
T Consensus       133 ~gd~~~g---~~~------~~pfD~Iiv~~a~~~  157 (215)
T d1jg1a_         133 LGDGSKG---FPP------KAPYDVIIVTAGAPK  157 (215)
T ss_dssp             ESCGGGC---CGG------GCCEEEEEECSBBSS
T ss_pred             ECccccC---Ccc------cCcceeEEeeccccc
Confidence            8875431   111      246999998877765

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=96.87  E-value=0.0013  Score=59.69  Aligned_cols=61  Identities=21%  Similarity=0.207  Sum_probs=48.5

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +++..++|.-+|.|+|+..+++...  +.|+|+|.++++|+.|+++.+....     ..++.+++.+.
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~-----~~~v~f~~~D~   83 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKR-----RFKVFFRAQDS   83 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCC-----SSEEEEEESCT
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCC-----CcceEEEEcch
Confidence            4789999999999999999987632  4699999999999999998876533     23666666653

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.0027  Score=59.94  Aligned_cols=87  Identities=17%  Similarity=0.245  Sum_probs=68.5

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      +|++.+++.+.  ..+..++|...|.|--+..++...|+. .|+|+|+++.|++.|+++.+.++.      .++++++++
T Consensus        96 ~lv~~~l~~~~--~~~~~vlDlGtGSG~I~i~la~~~p~~-~v~avDis~~Al~~A~~Na~~~~~------~~v~~~~~d  166 (274)
T d2b3ta1          96 CLVEQALARLP--EQPCRILDLGTGTGAIALALASERPDC-EIIAVDRMPDAVSLAQRNAQHLAI------KNIHILQSD  166 (274)
T ss_dssp             HHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTS-EEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCS
T ss_pred             hhhhhHhhhhc--ccccceeeeehhhhHHHHHHHhhCCcc-eeeeccchhHHHhHHHHHHHHhCc------ccceeeecc
Confidence            46777777765  355779999999999999999989875 799999999999999999888754      268889988


Q ss_pred             cchHHHHHhhhcccccccCccEEEEc
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      +-.   .+.       ..++|.|+.|
T Consensus       167 ~~~---~~~-------~~~fDlIvsN  182 (274)
T d2b3ta1         167 WFS---ALA-------GQQFAMIVSN  182 (274)
T ss_dssp             TTG---GGT-------TCCEEEEEEC
T ss_pred             ccc---ccC-------CCceeEEEec
Confidence            532   111       2368888877

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.86  E-value=0.00076  Score=60.11  Aligned_cols=60  Identities=22%  Similarity=0.396  Sum_probs=50.2

Q ss_pred             Ccccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          115 SHIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       115 ~H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      .-.|| |+..+|+.+.  .+|++++|..+|.|  |+++... ++  .+.||+|+|++.++.|++||++
T Consensus       195 ~~kP~~L~~~lI~~~s--~~gd~VlDpF~GSG--TT~~aa~~~~--R~~ig~El~~~y~~~a~~Rl~~  256 (256)
T d1g60a_         195 TPKPRDLIERIIRASS--NPNDLVLDCFMGSG--TTAIVAKKLG--RNFIGCDMNAEYVNQANFVLNQ  256 (256)
T ss_dssp             CCCCHHHHHHHHHHHC--CTTCEEEESSCTTC--HHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHC
T ss_pred             cccchhHHHHHHHHhC--CCCCEEEECCCCch--HHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHcC
Confidence            33888 8888999996  58999999999999  6666655 44  5789999999999999999863

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=96.83  E-value=0.0021  Score=58.90  Aligned_cols=91  Identities=10%  Similarity=-0.008  Sum_probs=66.8

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      .|-|.--+++.|. .+++..++|.-.|.| +..++|.++.  ++|+++|+|+++++.|++++..+        .++.+++
T Consensus        55 ~p~~~a~ml~~L~-l~~g~~VLdIG~GsG-y~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~--------~nv~~~~  122 (224)
T d1vbfa_          55 ALNLGIFMLDELD-LHKGQKVLEIGTGIG-YYTALIAEIV--DKVVSVEINEKMYNYASKLLSYY--------NNIKLIL  122 (224)
T ss_dssp             CHHHHHHHHHHTT-CCTTCEEEEECCTTS-HHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTC--------SSEEEEE
T ss_pred             hhhhHHHHHHHhh-hcccceEEEecCCCC-HHHHHHHHHh--cccccccccHHHHHHHHHHHhcc--------ccccccc
Confidence            4556667889997 679999999999999 5557777764  57999999999999999887653        2677777


Q ss_pred             cCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          197 KNFRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      ++..+-   +.+      ...+|.|++.-++.
T Consensus       123 ~d~~~g---~~~------~~pfD~Iiv~~a~~  145 (224)
T d1vbfa_         123 GDGTLG---YEE------EKPYDRVVVWATAP  145 (224)
T ss_dssp             SCGGGC---CGG------GCCEEEEEESSBBS
T ss_pred             Cchhhc---chh------hhhHHHHHhhcchh
Confidence            765431   111      13578887765554

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.82  E-value=0.0012  Score=59.12  Aligned_cols=60  Identities=15%  Similarity=0.236  Sum_probs=48.7

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI  202 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i  202 (452)
                      +++.++|.-+|.|.||..++++.   ..|+|+|.++.+++.|++++...+.       ++.+++++..++
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~~~~-------~v~~~~~d~~~~   96 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGL-------KPRLACQDISNL   96 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTC-------CCEEECCCGGGC
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccccCc-------cceeeccchhhh
Confidence            45789999999999999998763   2589999999999999998866432       567777777653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=96.80  E-value=0.0016  Score=54.90  Aligned_cols=56  Identities=9%  Similarity=0.008  Sum_probs=48.7

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      +++.+..|. ..|+..++|.=+|.|.++..++++   +..|+|+|+.+.+++.|+++...
T Consensus         9 ~~~~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~   64 (201)
T d1pjza_           9 LQQYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGE   64 (201)
T ss_dssp             HHHHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCS
T ss_pred             HHHHHHHcC-CCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhcc
Confidence            677888887 568999999999999999988876   24699999999999999998754

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.79  E-value=0.0017  Score=58.45  Aligned_cols=77  Identities=14%  Similarity=0.214  Sum_probs=62.5

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ...+++|.-+|.|.++..+.+..|+. .++|+|+.+..+..|.++....+.      .++.+++++..++.+++.     
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~-~~iGid~~~~~v~~a~~~~~~~~l------~Ni~~~~~da~~l~~~~~-----   98 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDI-NYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSDLTDYFE-----   98 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSCGGGTSC-----
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCC-ceEEEeccHHHHHHHHHhhhhhcc------ccceeeecCHHHHhhhcc-----
Confidence            44699999999999999999999986 589999999999999888877643      378999999877654433     


Q ss_pred             ccccCccEEEE
Q 012954          213 ILRSGVDAILM  223 (452)
Q Consensus       213 l~~~~VDGILf  223 (452)
                        ...+|.|.+
T Consensus        99 --~~~~~~i~i  107 (204)
T d1yzha1          99 --DGEIDRLYL  107 (204)
T ss_dssp             --TTCCSEEEE
T ss_pred             --CCceehhcc
Confidence              246888864

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.73  E-value=0.0023  Score=55.41  Aligned_cols=83  Identities=18%  Similarity=0.198  Sum_probs=59.3

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ++++++-..  .+++.++|.=+|.|.++..+.+. +  ..|+|+|.++++++.|++++...+.       ++..++.+..
T Consensus        27 ~~~~~~~~l--~~~~~ILDiGcG~G~~~~~la~~-~--~~v~giD~S~~~i~~ak~~~~~~~~-------~~~~~~~d~~   94 (226)
T d1ve3a1          27 LEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDY-G--FEVVGVDISEDMIRKAREYAKSRES-------NVEFIVGDAR   94 (226)
T ss_dssp             HHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTTC-------CCEEEECCTT
T ss_pred             HHHHHHHhc--CCCCEEEEECCCcchhhhhHhhh-h--cccccccccccchhhhhhhhccccc-------cccccccccc
Confidence            455654332  26788999999999999887754 2  4699999999999999998876532       4556666665


Q ss_pred             hHHHHHhhhcccccccCccEEEEc
Q 012954          201 HIKSVLGQIDENILRSGVDAILMD  224 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfD  224 (452)
                      ++.         +....+|.|+.-
T Consensus        95 ~l~---------~~~~~fD~I~~~  109 (226)
T d1ve3a1          95 KLS---------FEDKTFDYVIFI  109 (226)
T ss_dssp             SCC---------SCTTCEEEEEEE
T ss_pred             ccc---------ccCcCceEEEEe
Confidence            542         112468988874

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.72  E-value=0.0013  Score=59.26  Aligned_cols=70  Identities=16%  Similarity=0.183  Sum_probs=53.1

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      .|..++|.-.|.|.-+.+.+. .+. .+|+|+|+|+.|++.|+++++           ++.++++++.++          
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~-~ga-~~V~~vDid~~a~~~ar~N~~-----------~~~~~~~D~~~l----------  104 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYL-LGA-ESVTAFDIDPDAIETAKRNCG-----------GVNFMVADVSEI----------  104 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHH-TTB-SEEEEEESCHHHHHHHHHHCT-----------TSEEEECCGGGC----------
T ss_pred             CCCEEEEeCCCCcHHHHHHHH-cCC-CcccccccCHHHHHHHHHccc-----------cccEEEEehhhc----------
Confidence            688999999999977766554 443 469999999999999988653           355677777543          


Q ss_pred             ccccCccEEEEccCC
Q 012954          213 ILRSGVDAILMDLGM  227 (452)
Q Consensus       213 l~~~~VDGILfDLGv  227 (452)
                        ..++|.|++|-=+
T Consensus       105 --~~~fD~Vi~NPPf  117 (197)
T d1ne2a_         105 --SGKYDTWIMNPPF  117 (197)
T ss_dssp             --CCCEEEEEECCCC
T ss_pred             --CCcceEEEeCccc
Confidence              1469999988444

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.71  E-value=0.00095  Score=61.03  Aligned_cols=64  Identities=11%  Similarity=0.216  Sum_probs=52.6

Q ss_pred             CCCCcccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          112 QQSSHIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       112 ~~~~H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      .|..=.|+ |++.+|....  .+|++++|..+|.|  |+++... ++  .+.||||+++++++.|++||.++
T Consensus       230 ~hpt~kP~~L~~rlI~~~s--~~gdiVlDpF~GSG--TT~~AA~~lg--R~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         230 AHPARFPAKLPEFFIRMLT--EPDDLVVDIFGGSN--TTGLVAERES--RKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             CCSSCCCTHHHHHHHHHHC--CTTCEEEETTCTTC--HHHHHHHHTT--CEEEEEESCHHHHHHHHGGGSCS
T ss_pred             cCCCcCchHHHHHhhhhcc--cCCCEEEecCCCCc--HHHHHHHHcC--CcEEEEeCCHHHHHHHHHHHHhc
Confidence            34455788 8899999886  58999999999999  6666665 43  57899999999999999998754

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=96.58  E-value=0.002  Score=60.72  Aligned_cols=93  Identities=13%  Similarity=0.147  Sum_probs=68.5

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .|++.+++.+.. .+...++|++.|.|-=+.+++ +.|+ .+|+|+|++++|++.|+++.+.++.     ..++.+++++
T Consensus        97 ~lv~~~~~~~~~-~~~~~vld~g~GsG~i~~~la-~~~~-~~v~a~Dis~~Al~~A~~Na~~~~~-----~~~~~i~~~~  168 (271)
T d1nv8a_          97 ELVELALELIRK-YGIKTVADIGTGSGAIGVSVA-KFSD-AIVFATDVSSKAVEIARKNAERHGV-----SDRFFVRKGE  168 (271)
T ss_dssp             HHHHHHHHHHHH-HTCCEEEEESCTTSHHHHHHH-HHSS-CEEEEEESCHHHHHHHHHHHHHTTC-----TTSEEEEESS
T ss_pred             hhhhhhhhhhcc-ccccEEEEeeeeeehhhhhhh-hccc-ceeeechhhhhHHHHHHHHHHHcCC-----CceeEEeecc
Confidence            467777777753 345689999999997777765 4565 5799999999999999999888754     3477788887


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCC
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +.+.   +.+.     ...+|.|+.|-=|
T Consensus       169 ~~~~---~~~~-----~~~fDlIVsNPPY  189 (271)
T d1nv8a_         169 FLEP---FKEK-----FASIEMILSNPPY  189 (271)
T ss_dssp             TTGG---GGGG-----TTTCCEEEECCCC
T ss_pred             cccc---cccc-----cCcccEEEEcccc
Confidence            7542   2211     1369999998765

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.56  E-value=0.0066  Score=58.28  Aligned_cols=79  Identities=15%  Similarity=0.003  Sum_probs=59.9

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC-cchHHHHHhhhcc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN-FRHIKSVLGQIDE  211 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n-F~~i~~~L~~~~~  211 (452)
                      .+..++|+-.|.||-|.+.+.. +  ..|+++|.++.|++.|+++++..+..    ..++.+++++ |+.+......   
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~-G--A~V~~VD~s~~al~~a~~N~~ln~~~----~~~~~~i~~D~~~~l~~~~~~---  201 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAA-G--AEVTHVDASKKAIGWAKENQVLAGLE----QAPIRWICEDAMKFIQREERR---  201 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT-T--CEEEEECSCHHHHHHHHHHHHHHTCT----TSCEEEECSCHHHHHHHHHHH---
T ss_pred             CCCeEEEecCCCcHHHHHHHhC-C--CeEEEEeChHHHHHHHHHhhhhhccc----CCcEEEEeCCHHHhHHHHhhc---
Confidence            5779999999999999988764 2  36999999999999999987765432    2367888766 5555444432   


Q ss_pred             cccccCccEEEEc
Q 012954          212 NILRSGVDAILMD  224 (452)
Q Consensus       212 ~l~~~~VDGILfD  224 (452)
                         ...+|.|++|
T Consensus       202 ---~~~fD~IilD  211 (309)
T d2igta1         202 ---GSTYDIILTD  211 (309)
T ss_dssp             ---TCCBSEEEEC
T ss_pred             ---CCCCCEEEEC
Confidence               2469999999

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.52  E-value=0.0025  Score=58.22  Aligned_cols=69  Identities=7%  Similarity=0.043  Sum_probs=52.2

Q ss_pred             HhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHH
Q 012954          125 LDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIK  203 (452)
Q Consensus       125 l~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~  203 (452)
                      ++.|. .+||..++|.-+|.|..+..+.+..|+ +.|||+|.++.+++.++++.+..        .++..+........
T Consensus        67 l~~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~-g~V~aVDiS~~~i~~a~~~a~~~--------~ni~~i~~d~~~~~  135 (230)
T d1g8sa_          67 LKVMP-IKRDSKILYLGASAGTTPSHVADIADK-GIVYAIEYAPRIMRELLDACAER--------ENIIPILGDANKPQ  135 (230)
T ss_dssp             CCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHTTTC--------TTEEEEECCTTCGG
T ss_pred             HHhCC-CCCCCEEEEeCEEcCHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhhh--------cccceEEEeeccCc
Confidence            34453 579999999999999888888887765 68999999999999998865432        24555665555443

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.49  E-value=0.0035  Score=54.45  Aligned_cols=69  Identities=13%  Similarity=-0.000  Sum_probs=50.2

Q ss_pred             HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      +++..+... .++.++|.=+|.|.++..++++.   ..|+|+|+++.+++.|+++.+..+.      .++.+....+..
T Consensus        21 ~~~~~~~~~-~~grvLDiGcG~G~~~~~la~~g---~~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~~~~d~~~   89 (198)
T d2i6ga1          21 DVLAAAKVV-APGRTLDLGCGNGRNSLYLAANG---YDVTAWDKNPASMANLERIKAAEGL------DNLQTDLVDLNT   89 (198)
T ss_dssp             HHHHHHTTS-CSCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEECCTTT
T ss_pred             HHHHHcccC-CCCcEEEECCCCCHHHHHHHHHh---hhhccccCcHHHHHHHHHHhhhccc------cchhhhheeccc
Confidence            555555433 34689999999999999998763   3599999999999999987765432      245555555543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.45  E-value=0.0044  Score=55.01  Aligned_cols=92  Identities=13%  Similarity=0.077  Sum_probs=66.9

Q ss_pred             HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHH
Q 012954          124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIK  203 (452)
Q Consensus       124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~  203 (452)
                      +++.+. .+||..++|.=+|.|..+..+.+..   +.|+|+|..+.+++.|++++...+.      .++.+++++-.++.
T Consensus         8 l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~------~~~~~~~~d~~~~~   77 (234)
T d1xxla_           8 MIKTAE-CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGV------ENVRFQQGTAESLP   77 (234)
T ss_dssp             HHHHHT-CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTC------CSEEEEECBTTBCC
T ss_pred             HHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccc------cccccccccccccc
Confidence            556665 6899999999999998888887764   3699999999999999998876543      26788888765532


Q ss_pred             HHHhhhcccccccCccEEEEccCCCccCCCCCC
Q 012954          204 SVLGQIDENILRSGVDAILMDLGMSSMQVNNPE  236 (452)
Q Consensus       204 ~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~  236 (452)
                               +..+.+|.|+.-..+  +++.|+.
T Consensus        78 ---------~~~~~fD~v~~~~~l--~~~~d~~   99 (234)
T d1xxla_          78 ---------FPDDSFDIITCRYAA--HHFSDVR   99 (234)
T ss_dssp             ---------SCTTCEEEEEEESCG--GGCSCHH
T ss_pred             ---------ccccccceeeeecee--ecccCHH
Confidence                     112468888875433  3444443

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=96.39  E-value=0.0039  Score=57.12  Aligned_cols=91  Identities=9%  Similarity=0.135  Sum_probs=67.1

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      ..+.++.|. ..+.+.++|+=+|.|..|..+|.....  .|+|+|..+.+++.|++++...        .++++++.++.
T Consensus        82 s~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~--------~~~~~~~~d~~  150 (254)
T d1xtpa_          82 SRNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGM--------PVGKFILASME  150 (254)
T ss_dssp             HHHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTS--------SEEEEEESCGG
T ss_pred             HHHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhcccccc--------ccceeEEcccc
Confidence            455666665 356789999999999999999988654  5999999999999999877542        25777888776


Q ss_pred             hHHHHHhhhcccccccCccEEEEccCCCccCCC
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDLGMSSMQVN  233 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLD  233 (452)
                      ++.         +....+|.|++-.  +.+++.
T Consensus       151 ~~~---------~~~~~fD~I~~~~--vl~hl~  172 (254)
T d1xtpa_         151 TAT---------LPPNTYDLIVIQW--TAIYLT  172 (254)
T ss_dssp             GCC---------CCSSCEEEEEEES--CGGGSC
T ss_pred             ccc---------cCCCccceEEeec--cccccc
Confidence            541         1124689888754  345554

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=96.31  E-value=0.0028  Score=56.35  Aligned_cols=91  Identities=12%  Similarity=0.129  Sum_probs=62.2

Q ss_pred             cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      .+++....++    .++.++|.-+|.|.++..+.+. +  ..|+|+|.++++++.|++++.          .++.+++++
T Consensus        10 ~~~~~~~~~~----~~~~VLDiGcG~G~~~~~l~~~-g--~~v~giD~s~~~i~~a~~~~~----------~~~~~~~~~   72 (225)
T d2p7ia1          10 FMVRAFTPFF----RPGNLLELGSFKGDFTSRLQEH-F--NDITCVEASEEAISHAQGRLK----------DGITYIHSR   72 (225)
T ss_dssp             HHHHHHGGGC----CSSCEEEESCTTSHHHHHHTTT-C--SCEEEEESCHHHHHHHHHHSC----------SCEEEEESC
T ss_pred             HHHHHhhhhC----CCCcEEEEeCCCcHHHHHHHHc-C--CeEEEEeCcHHHhhhhhcccc----------ccccccccc
Confidence            3444444444    3568999999999888876654 3  248999999999999988643          157778888


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCC
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERG  238 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RG  238 (452)
                      +..+.     .     .+.+|.|++  .-+-.+++|+..-
T Consensus        73 ~~~~~-----~-----~~~fD~I~~--~~vleh~~d~~~~  100 (225)
T d2p7ia1          73 FEDAQ-----L-----PRRYDNIVL--THVLEHIDDPVAL  100 (225)
T ss_dssp             GGGCC-----C-----SSCEEEEEE--ESCGGGCSSHHHH
T ss_pred             ccccc-----c-----ccccccccc--cceeEecCCHHHH
Confidence            76541     1     246998886  2345566665443

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0036  Score=57.64  Aligned_cols=71  Identities=21%  Similarity=0.253  Sum_probs=55.2

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .+++.++|.-.|.|.++..+++..++ ..++|+|+++.+++.|+++..           ++.+++++..++.        
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~-~~~~giD~s~~~~~~a~~~~~-----------~~~~~~~d~~~l~--------  142 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPE-ITTFGLDVSKVAIKAAAKRYP-----------QVTFCVASSHRLP--------  142 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTT-SEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTSCS--------
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCC-CEEEEecchHhhhhhhhcccc-----------cccceeeehhhcc--------
Confidence            46789999999999999999998876 469999999999999987532           4566777766542        


Q ss_pred             cccccCccEEEE
Q 012954          212 NILRSGVDAILM  223 (452)
Q Consensus       212 ~l~~~~VDGILf  223 (452)
                       +....+|.|+.
T Consensus       143 -~~~~sfD~v~~  153 (268)
T d1p91a_         143 -FSDTSMDAIIR  153 (268)
T ss_dssp             -BCTTCEEEEEE
T ss_pred             -CCCCCEEEEee
Confidence             12346888874

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.30  E-value=0.008  Score=56.19  Aligned_cols=74  Identities=12%  Similarity=0.131  Sum_probs=60.1

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      +++.+++.|. .+||..++|.=+|.||-+..+.++.+.  .|+|+|++++.++.|+++.+..+.+     .++.+....+
T Consensus        40 k~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g~--~v~gi~ls~~q~~~a~~~~~~~~l~-----~~~~~~~~d~  111 (280)
T d2fk8a1          40 KVDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVLASIDTN-----RSRQVLLQGW  111 (280)
T ss_dssp             HHHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTSCCS-----SCEEEEESCG
T ss_pred             HHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCce--eEEEecchHHHHHHHHHHHHhhccc-----cchhhhhhhh
Confidence            5788899997 679999999999999999888877753  6999999999999999998876542     3566666665


Q ss_pred             ch
Q 012954          200 RH  201 (452)
Q Consensus       200 ~~  201 (452)
                      .+
T Consensus       112 ~~  113 (280)
T d2fk8a1         112 ED  113 (280)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.29  E-value=0.0022  Score=57.75  Aligned_cols=63  Identities=16%  Similarity=0.236  Sum_probs=51.4

Q ss_pred             CCCcccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          113 QSSHIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       113 ~~~H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      |..=.|+ |+..+|+...  .+|++++|..+|.|  |+++... ++  .+.||+|+|++.++.|++||+..
T Consensus       188 Hp~~kP~~L~~~~I~~~s--~~gdiVLDpF~GSG--TT~~Aa~~lg--R~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         188 HPTQKPAAVIERLVRALS--HPGSTVLDFFAGSG--VTARVAIQEG--RNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CTTCCCHHHHHHHHHHHS--CTTCEEEETTCTTC--HHHHHHHHHT--CEEEEEESSTHHHHHHHHHHHHC
T ss_pred             CccccchhHHHHHHHhhc--CCCCEEEecCCCCc--HHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHh
Confidence            4445788 8888999885  58999999999999  5555544 43  57999999999999999999764

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.011  Score=51.70  Aligned_cols=79  Identities=14%  Similarity=0.142  Sum_probs=60.2

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|+-.|.|.=+.+.|++-.  .+|+++|+|+.|++.+++.++.+..      .++.+++.+.   .+++...+  
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa--~~v~~VE~~~~a~~~~k~N~~~~~~------~~~~ii~~d~---~~~l~~~~--  109 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKA------GNARVVNSNA---MSFLAQKG--  109 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCH---HHHHSSCC--
T ss_pred             chhhhhhhhccccceeeeEEecCc--ceeEEEEEeechhhHHHHHHhhccc------cceeeeeecc---cccccccc--
Confidence            578999999999998888887643  3699999999999999999887643      3567777753   23444332  


Q ss_pred             ccccCccEEEEccCC
Q 012954          213 ILRSGVDAILMDLGM  227 (452)
Q Consensus       213 l~~~~VDGILfDLGv  227 (452)
                         ..+|.|++|==|
T Consensus       110 ---~~fDlIf~DPPY  121 (183)
T d2fpoa1         110 ---TPHNIVFVDPPF  121 (183)
T ss_dssp             ---CCEEEEEECCSS
T ss_pred             ---cccCEEEEcCcc
Confidence               469999998543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.015  Score=52.75  Aligned_cols=104  Identities=13%  Similarity=0.045  Sum_probs=75.0

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      ++--....+..|......+.+++.-.|.|-=|..|++.+++.|+|+++|.|++..+.|++.++..+.     ..+++++.
T Consensus        43 i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~-----~~~i~~~~  117 (219)
T d2avda1          43 MTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----EHKIDLRL  117 (219)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----TTTEEEEE
T ss_pred             cCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc-----cceEEEEE
Confidence            3333444555554222457999999999977777777888889999999999999999999988765     34788888


Q ss_pred             cCcch-HHHHHhhhcccccccCccEEEEccCCCc
Q 012954          197 KNFRH-IKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       197 ~nF~~-i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      +...+ +.+++....    ...+|.|++|-.-+.
T Consensus       118 Gda~e~l~~~~~~~~----~~~fD~ifiD~dk~~  147 (219)
T d2avda1         118 KPALETLDELLAAGE----AGTFDVAVVDADKEN  147 (219)
T ss_dssp             SCHHHHHHHHHHTTC----TTCEEEEEECSCSTT
T ss_pred             eehhhcchhhhhhcc----cCCccEEEEeCCHHH
Confidence            77554 455554321    246999999866544

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.81  E-value=0.01  Score=54.57  Aligned_cols=97  Identities=16%  Similarity=0.127  Sum_probs=62.6

Q ss_pred             HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHH
Q 012954          124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIK  203 (452)
Q Consensus       124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~  203 (452)
                      +++.|. .++++.++|.-+|.|.++..+++. +  ..|+|+|.++.+|+.|+++........  ...+..+...+|..++
T Consensus        48 l~~~l~-~~~~~~vLD~GcG~G~~~~~la~~-g--~~v~gvD~S~~ml~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~  121 (292)
T d1xvaa_          48 LLGLLR-QHGCHRVLDVACGTGVDSIMLVEE-G--FSVTSVDASDKMLKYALKERWNRRKEP--AFDKWVIEEANWLTLD  121 (292)
T ss_dssp             HHHHHH-HTTCCEEEESSCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTTTSH--HHHTCEEEECCGGGHH
T ss_pred             HHHHhh-hcCCCEEEEecCCCcHHHHHHHHc-C--CeeeeccCchHHHHHHHHHHHhccccc--ccceeeeeeccccccc
Confidence            455565 346779999999999999999876 2  369999999999999998765432110  0112344566776665


Q ss_pred             HHHhhhcccccccCccEEEEccCCCccCCC
Q 012954          204 SVLGQIDENILRSGVDAILMDLGMSSMQVN  233 (452)
Q Consensus       204 ~~L~~~~~~l~~~~VDGILfDLGvSS~QLD  233 (452)
                      .-+..      ...+|.|+. +|.+-.++.
T Consensus       122 ~~~~~------~~~fd~v~~-~~~~~~~~~  144 (292)
T d1xvaa_         122 KDVPA------GDGFDAVIC-LGNSFAHLP  144 (292)
T ss_dssp             HHSCC------TTCEEEEEE-CSSCGGGSC
T ss_pred             cccCC------CCCceEEEE-ecCchhhcC
Confidence            33221      236887775 344444443

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.014  Score=57.88  Aligned_cols=65  Identities=15%  Similarity=0.171  Sum_probs=56.4

Q ss_pred             CccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       115 ~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      .=.|-++.++++.+. .+++.+++|.=.|.|+.+..+...++. ++++|+|+.+.+++.|+++.+.+
T Consensus       199 El~~~~i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~-~~v~GIDiS~~~i~~Ak~~~~e~  263 (406)
T d1u2za_         199 ELLPNFLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEEL  263 (406)
T ss_dssp             CBCHHHHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHHH
Confidence            345668999999997 679999999999999999988888775 47999999999999999887665

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.57  E-value=0.011  Score=53.65  Aligned_cols=101  Identities=13%  Similarity=0.086  Sum_probs=68.7

Q ss_pred             ccchHHHHhhcc-CCCCCCEEEEEccCCChhHHHHHHh-CCC-----CCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCc
Q 012954          118 PVMLGEVLDVFS-SSRTITSFVDCTLGAAGHSSAIIRA-HPE-----LKLHIGVDVDPSALAKARAHLNSLLHGQAHPHL  190 (452)
Q Consensus       118 PVLl~Evl~~L~-~~~~ggiyVDaTlG~GGHS~aIL~~-~p~-----~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~  190 (452)
                      |-|.--+++.|. ..+++..++|.-.|.| +..++|.+ .+.     ..+|+++|+|++.++.|++++....... ....
T Consensus        64 P~~~a~~l~~L~~~l~~g~~VLeIGtGsG-Y~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~-~~~~  141 (223)
T d1r18a_          64 PHMHAFALEYLRDHLKPGARILDVGSGSG-YLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM-LDSG  141 (223)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEESCTTS-HHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH-HHHT
T ss_pred             hhhHHHHHHHHhhccCCCCeEEEecCCCC-HHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhh-cCcc
Confidence            667788888883 2468999999999999 55555555 322     3479999999999999998875432100 0012


Q ss_pred             eEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          191 KTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       191 r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      ++.+++++..+.   ..+      ...+|.|+++-++..
T Consensus       142 nv~~~~~d~~~~---~~~------~~~fD~Iiv~~a~~~  171 (223)
T d1r18a_         142 QLLIVEGDGRKG---YPP------NAPYNAIHVGAAAPD  171 (223)
T ss_dssp             SEEEEESCGGGC---CGG------GCSEEEEEECSCBSS
T ss_pred             EEEEEecccccc---ccc------ccceeeEEEEeechh
Confidence            678888776532   111      236899999887753

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=95.54  E-value=0.02  Score=51.81  Aligned_cols=87  Identities=17%  Similarity=0.260  Sum_probs=67.5

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK  197 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~  197 (452)
                      -...+++++.+. ..+.+.++|.=.|.|..+..+++++|+. +++++|. +++++.+++++...+.     ..+++++.+
T Consensus        66 ~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~~~la~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~-----~~rv~~~~~  137 (253)
T d1tw3a2          66 DVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGL-----SDRVDVVEG  137 (253)
T ss_dssp             TTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTC-----TTTEEEEEC
T ss_pred             HHHHHHHHhhcC-CccCCEEEEeCCCCCHHHHHHHHhccee-EEEEccC-HHHHHHHHHHHHHhhc-----ccchhhccc
Confidence            455678888885 4567899999999999999999999885 6899998 7789999998887654     347888888


Q ss_pred             CcchHHHHHhhhcccccccCccEEEE
Q 012954          198 NFRHIKSVLGQIDENILRSGVDAILM  223 (452)
Q Consensus       198 nF~~i~~~L~~~~~~l~~~~VDGILf  223 (452)
                      +|-.      ..     ..++|.|++
T Consensus       138 D~~~------~~-----~~~~D~v~~  152 (253)
T d1tw3a2         138 DFFE------PL-----PRKADAIIL  152 (253)
T ss_dssp             CTTS------CC-----SSCEEEEEE
T ss_pred             cchh------hc-----ccchhheee
Confidence            8632      11     135788876

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.50  E-value=0.028  Score=52.91  Aligned_cols=73  Identities=11%  Similarity=0.095  Sum_probs=60.7

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      |++.+++.|. .++|..++|.=+|.||-+..+.++++.  .|+|+|++++-++.|+++.+..+.     ..++.+...++
T Consensus        49 k~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g~--~v~git~s~~q~~~a~~~~~~~~l-----~~~v~~~~~d~  120 (291)
T d1kpia_          49 KRKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYDV--NVIGLTLSENQYAHDKAMFDEVDS-----PRRKEVRIQGW  120 (291)
T ss_dssp             HHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHSCC-----SSCEEEEECCG
T ss_pred             HHHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcCc--ceeeccchHHHHHHHHHHHHhhcc-----chhhhhhhhcc
Confidence            6888899997 679999999999999999999988863  689999999999999998877554     24677666665


Q ss_pred             c
Q 012954          200 R  200 (452)
Q Consensus       200 ~  200 (452)
                      .
T Consensus       121 ~  121 (291)
T d1kpia_         121 E  121 (291)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=95.48  E-value=0.0068  Score=56.62  Aligned_cols=82  Identities=12%  Similarity=0.046  Sum_probs=55.2

Q ss_pred             CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCC---CCceEEEEccCcchHHHHHhhhcc
Q 012954          135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAH---PHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~---~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      ..++|||.|.|.++..+... +  +.|++++++|......++-|+.+..+.+.   -..|+++++++..+   +|.+.. 
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~-G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~---~L~~~~-  162 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV-G--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT---ALTDIT-  162 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH-T--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH---HSTTCS-
T ss_pred             CEEEECCCcccHHHHHHHhC-C--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHH---HHhccC-
Confidence            48999999999777776654 3  35999999998877776655544321100   01378888888643   444432 


Q ss_pred             cccccCccEEEEccCC
Q 012954          212 NILRSGVDAILMDLGM  227 (452)
Q Consensus       212 ~l~~~~VDGILfDLGv  227 (452)
                          ..+|.|.+|==+
T Consensus       163 ----~~~DvIYlDPMF  174 (250)
T d2oyra1         163 ----PRPQVVYLDPMF  174 (250)
T ss_dssp             ----SCCSEEEECCCC
T ss_pred             ----CCCCEEEECCCC
Confidence                368999998543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.34  E-value=0.024  Score=51.63  Aligned_cols=96  Identities=11%  Similarity=0.043  Sum_probs=69.4

Q ss_pred             HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954          122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH  201 (452)
Q Consensus       122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~  201 (452)
                      ...+..|......+.++..-.+.|-=|..|++.+|+.|+|+.+|.|++..+.|++.++..+.     ..++++++++..+
T Consensus        48 g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~-----~~~i~~~~g~a~~  122 (227)
T d1susa1          48 GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDFREGPALP  122 (227)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEEEESCHHH
T ss_pred             HHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc-----ccceeeeehHHHH
Confidence            44555553222447999999999955666666788889999999999999999999988765     3589999988765


Q ss_pred             H-HHHHhhhcccccccCccEEEEcc
Q 012954          202 I-KSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       202 i-~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      . ++++....   ....+|.|++|-
T Consensus       123 ~L~~l~~~~~---~~~~fD~iFiDa  144 (227)
T d1susa1         123 VLDEMIKDEK---NHGSYDFIFVDA  144 (227)
T ss_dssp             HHHHHHHCGG---GTTCBSEEEECS
T ss_pred             HHHHHHhccc---cCCceeEEEecc
Confidence            4 33333211   124699999995

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=95.28  E-value=0.042  Score=49.99  Aligned_cols=75  Identities=16%  Similarity=0.168  Sum_probs=59.5

Q ss_pred             cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954          117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA  196 (452)
Q Consensus       117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~  196 (452)
                      .......+++.+. ....+.++|.=.|.|..+.+|++++|+. +++++|+ |+.++.|+++++..+.     ..++.++.
T Consensus        66 ~~~~~~~~~~~~d-~~~~~~vlDvG~G~G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~~~~~~~~-----~~ri~~~~  137 (256)
T d1qzza2          66 EDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHL-RGTLVEL-AGPAERARRRFADAGL-----ADRVTVAE  137 (256)
T ss_dssp             STTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEE
T ss_pred             HHHHHHHHHhcCC-CccCCEEEEECCCCCHHHHHHHHhhcCc-EEEEecC-hHHHHHHHHHHhhcCC-----cceeeeee
Confidence            3444666777764 4466899999999999999999999985 6899998 8899999998887654     34787777


Q ss_pred             cCc
Q 012954          197 KNF  199 (452)
Q Consensus       197 ~nF  199 (452)
                      .+|
T Consensus       138 ~d~  140 (256)
T d1qzza2         138 GDF  140 (256)
T ss_dssp             CCT
T ss_pred             eec
Confidence            665

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.016  Score=58.55  Aligned_cols=62  Identities=16%  Similarity=0.210  Sum_probs=45.2

Q ss_pred             ccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCC-----------------CCEEEEEeCCHHHHHHHHHHH
Q 012954          117 IPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPE-----------------LKLHIGVDVDPSALAKARAHL  178 (452)
Q Consensus       117 ~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~-----------------~g~VigfDrD~~Ai~~Ak~rL  178 (452)
                      +|- +++-+++.+. +.++..++|-++|.||=-.+..+.+..                 ...++|+|+|+.+...|+-.+
T Consensus       148 TP~~Iv~~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl  226 (524)
T d2ar0a1         148 TPRPLIKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC  226 (524)
T ss_dssp             CCHHHHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred             cccchhHhhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence            443 3566677776 568889999999999987766554211                 014899999999999998655


Q ss_pred             h
Q 012954          179 N  179 (452)
Q Consensus       179 ~  179 (452)
                      -
T Consensus       227 ~  227 (524)
T d2ar0a1         227 L  227 (524)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.82  E-value=0.054  Score=50.66  Aligned_cols=75  Identities=5%  Similarity=0.061  Sum_probs=62.9

Q ss_pred             chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954          120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF  199 (452)
Q Consensus       120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF  199 (452)
                      |++.+++-|. .+||..++|.=+|.||=+..+.++.+  ..|.|+++.++=++.|+++.+..+.     ..++.+...++
T Consensus        50 k~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~-----~~~v~~~~~d~  121 (285)
T d1kpga_          50 KIDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSEN-----LRSKRVLLAGW  121 (285)
T ss_dssp             HHHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCC-----CSCEEEEESCG
T ss_pred             HHHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhhh-----hhhhHHHHhhh
Confidence            4788888887 67999999999999999999898875  4799999999999999998877654     34788888887


Q ss_pred             chH
Q 012954          200 RHI  202 (452)
Q Consensus       200 ~~i  202 (452)
                      .++
T Consensus       122 ~~~  124 (285)
T d1kpga_         122 EQF  124 (285)
T ss_dssp             GGC
T ss_pred             hcc
Confidence            654

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=94.69  E-value=0.021  Score=53.34  Aligned_cols=89  Identities=20%  Similarity=0.185  Sum_probs=58.9

Q ss_pred             HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCC----CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954          123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHP----ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN  198 (452)
Q Consensus       123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p----~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n  198 (452)
                      +.++.+...+++..++|.++|.|+=..++++.+.    ....++|+|+|+.++..|+..+...+.       ...+++.+
T Consensus       107 ~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-------~~~~~~~d  179 (328)
T d2f8la1         107 YLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------KMTLLHQD  179 (328)
T ss_dssp             HHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------CCEEEESC
T ss_pred             HHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-------hhhhhccc
Confidence            4443333245677899999999998888876532    223699999999999999877655433       33444433


Q ss_pred             cchHHHHHhhhcccccccCccEEEEccCCC
Q 012954          199 FRHIKSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       199 F~~i~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      +-.      ..    ...++|.||.|-=|+
T Consensus       180 ~~~------~~----~~~~fD~vi~NPPy~  199 (328)
T d2f8la1         180 GLA------NL----LVDPVDVVISDLPVG  199 (328)
T ss_dssp             TTS------CC----CCCCEEEEEEECCCS
T ss_pred             ccc------cc----ccccccccccCCCCC
Confidence            211      10    124699999986665

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.036  Score=50.79  Aligned_cols=84  Identities=10%  Similarity=0.007  Sum_probs=58.8

Q ss_pred             CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc-hHHHHHhhhccc
Q 012954          134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR-HIKSVLGQIDEN  212 (452)
Q Consensus       134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~-~i~~~L~~~~~~  212 (452)
                      ...++|.-.|.|-=+..|+.+.++. .++|+|+|++|++.|++.++..+.     ..++.+++.+.. .+...+....  
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~-~~~~~Di~~~al~~A~~N~~~n~l-----~~~~~~~~~~~~~~~~~~~~~~~--  133 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGW-YFLATEVDDMCFNYAKKNVEQNNL-----SDLIKVVKVPQKTLLMDALKEES--  133 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTCSSTTTSTTCC--
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCc-cccceecCHHHHHHHHHHHHHhCC-----CcceeeeeeccHHhhhhhhhhcc--
Confidence            4579999999999888888888774 699999999999999999887654     347777765432 2211221111  


Q ss_pred             ccccCccEEEEccCC
Q 012954          213 ILRSGVDAILMDLGM  227 (452)
Q Consensus       213 l~~~~VDGILfDLGv  227 (452)
                        ...+|.|+-|-=|
T Consensus       134 --~~~fD~ivsNPPY  146 (250)
T d2h00a1         134 --EIIYDFCMCNPPF  146 (250)
T ss_dssp             --SCCBSEEEECCCC
T ss_pred             --cCceeEEEecCcc
Confidence              1346777666544

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.03  Score=49.56  Aligned_cols=59  Identities=8%  Similarity=0.012  Sum_probs=46.4

Q ss_pred             ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      |.|++-+.+.|. ..+++.++|.=+|.|-++..+.+. +  -.|+|+|..++||+.|+++...
T Consensus        31 ~~l~~~~~~~l~-~~~~~rvLd~GCG~G~~a~~LA~~-G--~~V~gvD~S~~ai~~a~~~~~~   89 (229)
T d2bzga1          31 QLLKKHLDTFLK-GKSGLRVFFPLCGKAVEMKWFADR-G--HSVVGVEISELGIQEFFTEQNL   89 (229)
T ss_dssp             HHHHHHHHHHHT-TCCSCEEEETTCTTCTHHHHHHHT-T--CEEEEECSCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHHhC-C--CcEEEEeCCHHHHHHHHHHhhc
Confidence            445555556665 458899999999999998888864 3  3699999999999999887543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.12  Score=46.53  Aligned_cols=93  Identities=14%  Similarity=0.003  Sum_probs=60.2

Q ss_pred             CEEEEEccCCChhHHHHHHhC----CC-CCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhh
Q 012954          135 TSFVDCTLGAAGHSSAIIRAH----PE-LKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQI  209 (452)
Q Consensus       135 giyVDaTlG~GGHS~aIL~~~----p~-~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~  209 (452)
                      -.++|.=+|.|..+..||..+    ++ ...++|+|..+.+++.|+++++....   ....++.+.+..+..+.......
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  118 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN---LENVKFAWHKETSSEYQSRMLEK  118 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS---CTTEEEEEECSCHHHHHHHHTTS
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc---cccccccchhhhhhhhcchhccc
Confidence            369999999999999998753    33 23578999999999999998865421   11235566666666543332221


Q ss_pred             cccccccCccEEEEccCCCccCCCCC
Q 012954          210 DENILRSGVDAILMDLGMSSMQVNNP  235 (452)
Q Consensus       210 ~~~l~~~~VDGILfDLGvSS~QLDd~  235 (452)
                         .....+|.|++=..  -++++|+
T Consensus       119 ---~~~~~fD~I~~~~~--l~~~~d~  139 (280)
T d1jqea_         119 ---KELQKWDFIHMIQM--LYYVKDI  139 (280)
T ss_dssp             ---SSCCCEEEEEEESC--GGGCSCH
T ss_pred             ---CCCCceeEEEEccc--eecCCCH
Confidence               12356888887332  3444444

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=93.23  E-value=0.14  Score=46.40  Aligned_cols=76  Identities=5%  Similarity=0.083  Sum_probs=62.1

Q ss_pred             CCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954          114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       114 ~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      |-+-+-.++.+++.+. ..+++.+++.=.|.|-=|..||+..   .+|+|+|+|+..++..+++...+        .+++
T Consensus         3 FL~d~~i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~~--------~n~~   70 (235)
T d1qama_           3 FITSKHNIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDH--------DNFQ   70 (235)
T ss_dssp             BCCCHHHHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTC--------CSEE
T ss_pred             CcCCHHHHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhcc--------cchh
Confidence            3444556888999997 5689999999999999999999873   46999999999999988766442        3789


Q ss_pred             EEccCcch
Q 012954          194 TFAKNFRH  201 (452)
Q Consensus       194 li~~nF~~  201 (452)
                      ++++++-.
T Consensus        71 i~~~D~l~   78 (235)
T d1qama_          71 VLNKDILQ   78 (235)
T ss_dssp             EECCCGGG
T ss_pred             hhhhhhhh
Confidence            99988854

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.022  Score=50.31  Aligned_cols=60  Identities=10%  Similarity=-0.023  Sum_probs=44.6

Q ss_pred             chHHHHhhccC-CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954          120 MLGEVLDVFSS-SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL  181 (452)
Q Consensus       120 Ll~Evl~~L~~-~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~  181 (452)
                      +++++.+.+.. ..++..++|..+|.|+|+..+++..  ...|+|+|..+.+++.|+++++..
T Consensus        37 ~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~   97 (257)
T d2a14a1          37 NLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKE   97 (257)
T ss_dssp             HHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhc
Confidence            34555555431 1356789999999999997665543  236999999999999999988764

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.15  Score=44.34  Aligned_cols=89  Identities=16%  Similarity=0.168  Sum_probs=62.8

Q ss_pred             hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954          121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR  200 (452)
Q Consensus       121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~  200 (452)
                      |.|+.+-+...+++..++|...+=||=++.+++..++.++++|+|..+.         ++        -..+.++++++.
T Consensus        10 L~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~~--------i~~~~~~~~d~~   72 (180)
T d1ej0a_          10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DP--------IVGVDFLQGDFR   72 (180)
T ss_dssp             HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CC--------CTTEEEEESCTT
T ss_pred             HHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------cc--------cCCceEeecccc
Confidence            5566666554568999999999999999999998777789999998751         11        125677888886


Q ss_pred             hHHHHHhhhcccccccCccEEEEccCC
Q 012954          201 HIKSVLGQIDENILRSGVDAILMDLGM  227 (452)
Q Consensus       201 ~i~~~L~~~~~~l~~~~VDGILfDLGv  227 (452)
                      +-........ .....++|.|+-|.+.
T Consensus        73 ~~~~~~~~~~-~~~~~~~DlVlSD~ap   98 (180)
T d1ej0a_          73 DELVMKALLE-RVGDSKVQVVMSDMAP   98 (180)
T ss_dssp             SHHHHHHHHH-HHTTCCEEEEEECCCC
T ss_pred             cchhhhhhhh-hccCcceeEEEecccc
Confidence            5433221110 0113469999999884

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=91.71  E-value=0.18  Score=43.47  Aligned_cols=43  Identities=19%  Similarity=0.013  Sum_probs=36.8

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL  178 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL  178 (452)
                      ++..++|.=+|.|.++..+.+. +  .+|+|+|.++.+++.|+++.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~l~~a~~~~   84 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQER-G--FEVVLVDPSKEMLEVAREKG   84 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT-T--CEEEEEESCHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCchhccccccc-c--eEEEEeeccccccccccccc
Confidence            5678999999999999988764 2  46999999999999998753

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=90.92  E-value=0.26  Score=42.42  Aligned_cols=83  Identities=12%  Similarity=0.149  Sum_probs=58.2

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++..++|+-.|.|.=+.+.|++-.  ..++.+|.|..|++..++.++..+..    .....++..+.   .+++....  
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA--~~v~fVE~~~~a~~~ik~Ni~~l~~~----~~~~~~~~~d~---~~~l~~~~--  111 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCS----SEQAEVINQSS---LDFLKQPQ--  111 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCC----TTTEEEECSCH---HHHTTSCC--
T ss_pred             ccceEeecccCccceeeeeeeecc--eeeEEeecccchhhhHhhHHhhhccc----ccccccccccc---cccccccc--
Confidence            678999999999999999998743  46999999999999999988876432    12344444442   22333221  


Q ss_pred             ccccCccEEEEccCC
Q 012954          213 ILRSGVDAILMDLGM  227 (452)
Q Consensus       213 l~~~~VDGILfDLGv  227 (452)
                       ....+|.|++|==|
T Consensus       112 -~~~~fDlIFlDPPY  125 (183)
T d2ifta1         112 -NQPHFDVVFLDPPF  125 (183)
T ss_dssp             -SSCCEEEEEECCCS
T ss_pred             -cCCcccEEEechhH
Confidence             12359999988555

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.29  E-value=0.32  Score=45.29  Aligned_cols=76  Identities=18%  Similarity=0.131  Sum_probs=53.9

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      ++.+++|.-.|.|..|.... +.+. .+|+|+|.++.+ +.|++..+..+.     ..++++++++..++.         
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa-~~Ga-~~V~avd~s~~~-~~a~~~~~~~~~-----~~~i~~i~~~~~~l~---------  100 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAA-KHGA-KHVIGVDMSSII-EMAKELVELNGF-----SDKITLLRGKLEDVH---------  100 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHH-HTCC-SEEEEEESSTHH-HHHHHHHHHTTC-----TTTEEEEESCTTTSC---------
T ss_pred             CcCEEEEeCCCCCHHHHHHH-HhCC-CEEEEEeCCHHH-HHHHHHHHHhCc-----cccceEEEeehhhcc---------
Confidence            68899999999998886555 4443 379999999754 667776665543     347888898877642         


Q ss_pred             ccccCccEEEEcc
Q 012954          213 ILRSGVDAILMDL  225 (452)
Q Consensus       213 l~~~~VDGILfDL  225 (452)
                      +....+|.|+.++
T Consensus       101 ~~~~~~D~i~se~  113 (328)
T d1g6q1_         101 LPFPKVDIIISEW  113 (328)
T ss_dssp             CSSSCEEEEEECC
T ss_pred             CcccceeEEEEEe
Confidence            1124688888754

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=90.22  E-value=0.11  Score=44.34  Aligned_cols=63  Identities=16%  Similarity=0.188  Sum_probs=44.5

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      +++.++|.-+|.|..+..+.       +++|+|..+.+++.|+++             ++.+++++..++.         
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~-------------~~~~~~~d~~~l~---------   86 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR-------------GVFVLKGTAENLP---------   86 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT-------------TCEEEECBTTBCC---------
T ss_pred             CCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc-------------ccccccccccccc---------
Confidence            56789999999998776652       258999999999999863             2455666665542         


Q ss_pred             ccccCccEEEEc
Q 012954          213 ILRSGVDAILMD  224 (452)
Q Consensus       213 l~~~~VDGILfD  224 (452)
                      +..+.+|.|+.-
T Consensus        87 ~~~~~fD~I~~~   98 (208)
T d1vlma_          87 LKDESFDFALMV   98 (208)
T ss_dssp             SCTTCEEEEEEE
T ss_pred             cccccccccccc
Confidence            112357777754

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=89.55  E-value=0.46  Score=44.72  Aligned_cols=82  Identities=16%  Similarity=0.252  Sum_probs=57.7

Q ss_pred             CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccc
Q 012954          134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENI  213 (452)
Q Consensus       134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l  213 (452)
                      .+.++..=+|.|+=..++|+..+ ..+|.++|+|++.++.|++.+...... .....|++++.+...+   +|++.+   
T Consensus        78 pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~-~~~d~rv~i~~~Da~~---~l~~~~---  149 (312)
T d1uira_          78 PKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQG-AFDDPRAVLVIDDARA---YLERTE---  149 (312)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTT-GGGCTTEEEEESCHHH---HHHHCC---
T ss_pred             cceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccC-ccCCCceEEEEchHHH---HhhhcC---
Confidence            35778888899988888886544 457999999999999999877432110 0012478887766543   444432   


Q ss_pred             cccCccEEEEcc
Q 012954          214 LRSGVDAILMDL  225 (452)
Q Consensus       214 ~~~~VDGILfDL  225 (452)
                        .++|.|+.|+
T Consensus       150 --~~yDvIi~D~  159 (312)
T d1uira_         150 --ERYDVVIIDL  159 (312)
T ss_dssp             --CCEEEEEEEC
T ss_pred             --CcccEEEEeC
Confidence              4799999997

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=88.57  E-value=0.79  Score=42.21  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=55.0

Q ss_pred             CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954          135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL  214 (452)
Q Consensus       135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~  214 (452)
                      ..++-+=.|.|+=...+|+ +++..+|..+|+|++.++.|++.+......  ....|++++.+.-.   ++|+..+    
T Consensus        77 ~~vLiiGgG~G~~~~~~l~-~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~--~~d~r~~i~~~D~~---~~l~~~~----  146 (274)
T d1iy9a_          77 EHVLVVGGGDGGVIREILK-HPSVKKATLVDIDGKVIEYSKKFLPSIAGK--LDDPRVDVQVDDGF---MHIAKSE----  146 (274)
T ss_dssp             CEEEEESCTTCHHHHHHTT-CTTCSEEEEEESCHHHHHHHHHHCHHHHTT--TTSTTEEEEESCSH---HHHHTCC----
T ss_pred             ceEEecCCCCcHHHHHHHh-cCCcceEEEecCCHHHHHHHHHhChhhccc--ccCCCeEEEechHH---HHHhhcC----
Confidence            5677777888888888885 444467999999999999999876432211  11347887765533   2344332    


Q ss_pred             ccCccEEEEcc
Q 012954          215 RSGVDAILMDL  225 (452)
Q Consensus       215 ~~~VDGILfDL  225 (452)
                       .++|.|+.|+
T Consensus       147 -~~yDvIi~D~  156 (274)
T d1iy9a_         147 -NQYDVIMVDS  156 (274)
T ss_dssp             -SCEEEEEESC
T ss_pred             -CCCCEEEEcC
Confidence             4799999997

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.48  E-value=0.46  Score=43.93  Aligned_cols=78  Identities=10%  Similarity=0.026  Sum_probs=54.1

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN  212 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~  212 (452)
                      +|.+++|.=.|.|..|...++ .+. .+|+|+|.++.+. .+++..+..+.     ..++++++++..++.         
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~-~Ga-~~V~avd~s~~~~-~a~~~~~~n~~-----~~~v~~~~~~~~~~~---------   95 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAK-AGA-RKVIGIECSSISD-YAVKIVKANKL-----DHVVTIIKGKVEEVE---------   95 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH-TTC-SEEEEEECSTTHH-HHHHHHHHTTC-----TTTEEEEESCTTTCC---------
T ss_pred             CcCEEEEEecCCcHHHHHHHH-hCC-CEEEEEcCcHHHh-hhhhHHHHhCC-----ccccceEeccHHHcc---------
Confidence            688999999999988876665 443 3799999998764 44444444332     347899998887642         


Q ss_pred             ccccCccEEEEccCC
Q 012954          213 ILRSGVDAILMDLGM  227 (452)
Q Consensus       213 l~~~~VDGILfDLGv  227 (452)
                      +....+|.|+.++-.
T Consensus        96 ~~~~~~D~ivs~~~~  110 (316)
T d1oria_          96 LPVEKVDIIISEWMG  110 (316)
T ss_dssp             CSSSCEEEEEECCCB
T ss_pred             cccceeEEEeeeeee
Confidence            113468988876543

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.28  E-value=0.72  Score=42.80  Aligned_cols=78  Identities=12%  Similarity=0.227  Sum_probs=62.4

Q ss_pred             CCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954          114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       114 ~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      |-+-|-.++.+++.+. ..++..++..=-|.|.=|.+||+..   .+|+|+++|+..++..++++..+..     ..+++
T Consensus         3 FL~d~~i~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~-----~~~~~   73 (278)
T d1zq9a1           3 ILKNPLIINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPV-----ASKLQ   73 (278)
T ss_dssp             EECCHHHHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTT-----GGGEE
T ss_pred             CcCCHHHHHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhcc-----ccchh
Confidence            3455667889999987 4688999999999999999999873   3699999999999998887765422     24788


Q ss_pred             EEccCcc
Q 012954          194 TFAKNFR  200 (452)
Q Consensus       194 li~~nF~  200 (452)
                      ++++++-
T Consensus        74 ~i~~D~l   80 (278)
T d1zq9a1          74 VLVGDVL   80 (278)
T ss_dssp             EEESCTT
T ss_pred             hhHHHHh
Confidence            8887663

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=88.13  E-value=0.39  Score=46.42  Aligned_cols=99  Identities=17%  Similarity=0.155  Sum_probs=64.6

Q ss_pred             cccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCC------------CEEEEEeCCHHHHHHHHHHHhhhc
Q 012954          116 HIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPEL------------KLHIGVDVDPSALAKARAHLNSLL  182 (452)
Q Consensus       116 H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~------------g~VigfDrD~~Ai~~Ak~rL~~~~  182 (452)
                      -+|- +++.+++.+. +.++..++|-|+|.||=-.+.++.+...            ..++|.|+|+.+...|+-.+.-.+
T Consensus       145 ~TP~~Iv~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g  223 (425)
T d2okca1         145 FTPRPLIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG  223 (425)
T ss_dssp             CCCHHHHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT
T ss_pred             ccchhhhHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcC
Confidence            3444 4677777776 5678999999999999988887763211            138999999999999987654433


Q ss_pred             cCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954          183 HGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS  229 (452)
Q Consensus       183 ~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS  229 (452)
                      ..    .....+.++++-      ...    ....+|.||.|-=|+.
T Consensus       224 ~~----~~~~~i~~~d~l------~~~----~~~~fD~Ii~NPPfg~  256 (425)
T d2okca1         224 IG----TDRSPIVCEDSL------EKE----PSTLVDVILANPPFGT  256 (425)
T ss_dssp             CC----SSCCSEEECCTT------TSC----CSSCEEEEEECCCSSC
T ss_pred             Cc----cccceeecCchh------hhh----cccccceEEecCCCCC
Confidence            21    112333444432      111    1246899998876643

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=87.89  E-value=0.041  Score=50.59  Aligned_cols=79  Identities=8%  Similarity=0.168  Sum_probs=64.7

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      .|+-+-+-.++.+++.+. ..++..+++.=.|.|.=|..|++..   .+|+|+|+|+..++.+++++..        ..+
T Consensus         9 QnFL~d~~ii~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~~--------~~n   76 (245)
T d1yuba_           9 QNFLTSEKVLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKL--------NTR   76 (245)
T ss_dssp             CCBCCCTTTHHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTT--------CSE
T ss_pred             CcccCCHHHHHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhhh--------ccc
Confidence            677777999999999997 5688999999999999999999873   3699999999887766554432        248


Q ss_pred             EEEEccCcchH
Q 012954          192 THTFAKNFRHI  202 (452)
Q Consensus       192 ~~li~~nF~~i  202 (452)
                      ++++++++-.+
T Consensus        77 ~~ii~~D~l~~   87 (245)
T d1yuba_          77 VTLIHQDILQF   87 (245)
T ss_dssp             EEECCSCCTTT
T ss_pred             hhhhhhhhhcc
Confidence            99999988765

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.86  E-value=0.66  Score=43.45  Aligned_cols=94  Identities=17%  Similarity=0.257  Sum_probs=60.5

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      +...|.|.+++        +.| ..++=.=+|.||=..++|+..+ ..+|.++|+||+.++.|++.+......  ....|
T Consensus        77 E~l~h~pl~~~--------~~p-k~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~--~~d~r  144 (295)
T d1inla_          77 EMLAHVPMFLH--------PNP-KKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCG--FDDPR  144 (295)
T ss_dssp             HHHHHHHHHHS--------SSC-CEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGG--GGCTT
T ss_pred             hhhcchhHhhC--------CCC-ceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhccc--ccCCC
Confidence            44456666533        234 4555555688888888886444 457999999999999999866432110  01247


Q ss_pred             EEEEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954          192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDL  225 (452)
Q Consensus       192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL  225 (452)
                      ++++.+.-   .++|.+.+     ..+|.|+.|+
T Consensus       145 v~v~~~Da---~~~l~~~~-----~~yDvIi~D~  170 (295)
T d1inla_         145 AEIVIANG---AEYVRKFK-----NEFDVIIIDS  170 (295)
T ss_dssp             EEEEESCH---HHHGGGCS-----SCEEEEEEEC
T ss_pred             cEEEhhhH---HHHHhcCC-----CCCCEEEEcC
Confidence            88776543   34565542     4799999995

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=87.59  E-value=0.95  Score=41.25  Aligned_cols=97  Identities=8%  Similarity=0.083  Sum_probs=69.5

Q ss_pred             CCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954          114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH  193 (452)
Q Consensus       114 ~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~  193 (452)
                      |-+-+..++.+++.+. ..+++.++..=-|.|.=|..||+..   .+|+|+|+|+..++..+++...        ..+++
T Consensus         3 FL~d~~~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~--------~~~~~   70 (252)
T d1qyra_           3 FLNDQFVIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPFL--------GPKLT   70 (252)
T ss_dssp             EECCHHHHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCTTT--------GGGEE
T ss_pred             ccCCHHHHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHhhh--------ccchh
Confidence            3345667889999997 5688999999999999999999763   3599999999998887654322        24799


Q ss_pred             EEccCcchH--HHHHhhhcccccccCccEEEEccCCC
Q 012954          194 TFAKNFRHI--KSVLGQIDENILRSGVDAILMDLGMS  228 (452)
Q Consensus       194 li~~nF~~i--~~~L~~~~~~l~~~~VDGILfDLGvS  228 (452)
                      ++++++-.+  .++....+      ..-.|+-||=|+
T Consensus        71 ii~~D~l~~~~~~~~~~~~------~~~~vvgNlPY~  101 (252)
T d1qyra_          71 IYQQDAMTFNFGELAEKMG------QPLRVFGNLPYN  101 (252)
T ss_dssp             EECSCGGGCCHHHHHHHHT------SCEEEEEECCTT
T ss_pred             HHhhhhhhhcccccccccC------CCeEEEecchHH
Confidence            999998743  22322211      223577776554

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.78  E-value=1.3  Score=40.52  Aligned_cols=77  Identities=14%  Similarity=0.061  Sum_probs=52.6

Q ss_pred             CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954          132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE  211 (452)
Q Consensus       132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~  211 (452)
                      .++.+++|.=.|.|.-+..+++. +. .+|+|+|..+.++..+ +.....+.     ..++++++++..++.        
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~-Ga-~~V~aid~s~~~~~a~-~~~~~~~~-----~~~i~~~~~~~~~l~--------   97 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKA-GA-KKVLGVDQSEILYQAM-DIIRLNKL-----EDTITLIKGKIEEVH--------   97 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEESSTHHHHHH-HHHHHTTC-----TTTEEEEESCTTTSC--------
T ss_pred             CCcCEEEEECCCCCHHHHHHHHc-CC-CEEEEEeCHHHHHHHH-HHHHHhCC-----CccceEEEeeHHHhc--------
Confidence            46889999999999887766654 43 4799999999887544 33333322     247888888776642        


Q ss_pred             cccccCccEEEEcc
Q 012954          212 NILRSGVDAILMDL  225 (452)
Q Consensus       212 ~l~~~~VDGILfDL  225 (452)
                       +....+|.|+.++
T Consensus        98 -~~~~~~D~Ivse~  110 (311)
T d2fyta1          98 -LPVEKVDVIISEW  110 (311)
T ss_dssp             -CSCSCEEEEEECC
T ss_pred             -CccccceEEEEee
Confidence             1124688887653

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.50  E-value=1.6  Score=40.32  Aligned_cols=80  Identities=14%  Similarity=0.206  Sum_probs=54.4

Q ss_pred             CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954          135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL  214 (452)
Q Consensus       135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~  214 (452)
                      +.++=+=.|.|+=...+|+. ++..++..+|+|++.++.|++.+.......  ...|++++.+.=   .++|+..     
T Consensus        80 k~vLiiGgG~G~~~~~~l~~-~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~--~d~rv~i~~~Da---~~~l~~~-----  148 (285)
T d2o07a1          80 RKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGY--SSSKLTLHVGDG---FEFMKQN-----  148 (285)
T ss_dssp             CEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGG--GCTTEEEEESCH---HHHHHTC-----
T ss_pred             CeEEEeCCCchHHHHHHHHc-CCcceeeeccCCHHHHHHHHhhchhhcccc--CCCCceEEEccH---HHHHhcC-----
Confidence            45666778888888888854 444579999999999999998764321100  124788876652   2344433     


Q ss_pred             ccCccEEEEcc
Q 012954          215 RSGVDAILMDL  225 (452)
Q Consensus       215 ~~~VDGILfDL  225 (452)
                      ..++|.|+.|+
T Consensus       149 ~~~yDvIi~D~  159 (285)
T d2o07a1         149 QDAFDVIITDS  159 (285)
T ss_dssp             SSCEEEEEEEC
T ss_pred             CCCCCEEEEcC
Confidence            24799999996

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.28  E-value=0.86  Score=42.35  Aligned_cols=95  Identities=12%  Similarity=0.190  Sum_probs=57.3

Q ss_pred             CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954          112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK  191 (452)
Q Consensus       112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r  191 (452)
                      +...|.|.++.        ++|.. ++=.=.|.||=..++|+ +++..++..+|+|++.++.|++-+.......  ...|
T Consensus        68 e~l~h~~~~~~--------~~pk~-VLiiGgG~G~~~r~~l~-~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~--~~~r  135 (290)
T d1xj5a_          68 EMITHLPLCSI--------PNPKK-VLVIGGGDGGVLREVAR-HASIEQIDMCEIDKMVVDVSKQFFPDVAIGY--EDPR  135 (290)
T ss_dssp             HHHHHHHHTTS--------SCCCE-EEEETCSSSHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--GSTT
T ss_pred             HHHhhHHHhhC--------CCCcc-eEEecCCchHHHHHHHh-cccceeeEEecCCHHHHHHHHHhchhhhccc--cCCC
Confidence            44556665532        23443 44445677766777775 4444579999999999999998653211100  0236


Q ss_pred             EEEEccC-cchHHHHHhhhcccccccCccEEEEccC
Q 012954          192 THTFAKN-FRHIKSVLGQIDENILRSGVDAILMDLG  226 (452)
Q Consensus       192 ~~li~~n-F~~i~~~L~~~~~~l~~~~VDGILfDLG  226 (452)
                      ++++.+. +..+    .+..    ...+|.|+.|+=
T Consensus       136 ~~i~~~Da~~~l----~~~~----~~~yDvIi~D~~  163 (290)
T d1xj5a_         136 VNLVIGDGVAFL----KNAA----EGSYDAVIVDSS  163 (290)
T ss_dssp             EEEEESCHHHHH----HTSC----TTCEEEEEECCC
T ss_pred             cEEEEccHHHHH----hhcc----ccCccEEEEcCC
Confidence            7766543 4443    3221    236999999973

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.12  E-value=1.4  Score=41.53  Aligned_cols=79  Identities=18%  Similarity=0.249  Sum_probs=55.9

Q ss_pred             CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954          135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL  214 (452)
Q Consensus       135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~  214 (452)
                      ..++-.=.|.||=..++|+ +++..+|..+|+|++.++.|++-+......  ....|++++.+.-.   +++++.     
T Consensus       108 k~VLIiGgG~G~~~rellk-~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~--~~dprv~i~i~Da~---~~l~~~-----  176 (312)
T d2b2ca1         108 KRVLIIGGGDGGILREVLK-HESVEKVTMCEIDEMVIDVAKKFLPGMSCG--FSHPKLDLFCGDGF---EFLKNH-----  176 (312)
T ss_dssp             CEEEEESCTTSHHHHHHTT-CTTCCEEEEECSCHHHHHHHHHHCTTTSGG--GGCTTEEEECSCHH---HHHHHC-----
T ss_pred             CeEEEeCCCchHHHHHHHH-cCCcceEEEEcccHHHHHHHHhhchhhccc--cCCCCeEEEEchHH---HHHHhC-----
Confidence            5677788888888888885 445467999999999999999876432110  01247888776644   345543     


Q ss_pred             ccCccEEEEc
Q 012954          215 RSGVDAILMD  224 (452)
Q Consensus       215 ~~~VDGILfD  224 (452)
                      ...+|.|+.|
T Consensus       177 ~~~yDvII~D  186 (312)
T d2b2ca1         177 KNEFDVIITD  186 (312)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCCCCEEEEc
Confidence            2479999999

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.61  E-value=2.1  Score=39.06  Aligned_cols=83  Identities=14%  Similarity=0.101  Sum_probs=56.1

Q ss_pred             CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccC----CCCCCceEEEEccCcchHHHHHhh
Q 012954          133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHG----QAHPHLKTHTFAKNFRHIKSVLGQ  208 (452)
Q Consensus       133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~----~~~~~~r~~li~~nF~~i~~~L~~  208 (452)
                      +...++-+=+|.|+=..++|+ ++. .+|.++|+||+.++.|++.+......    ......|++++.++-.   +++++
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~-~~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~---~~l~~  146 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQ-HDV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGF---EFIKN  146 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTT-SCC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHH---HHHHH
T ss_pred             CCceEEEecCCchHHHHHHHH-hCC-ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHH---HHHhc
Confidence            346778888899988888886 555 47999999999999998755211000    0001347888876643   34443


Q ss_pred             hcccccccCccEEEEccC
Q 012954          209 IDENILRSGVDAILMDLG  226 (452)
Q Consensus       209 ~~~~l~~~~VDGILfDLG  226 (452)
                      .      .++|.|+.|+-
T Consensus       147 ~------~~yDvIi~D~~  158 (276)
T d1mjfa_         147 N------RGFDVIIADST  158 (276)
T ss_dssp             C------CCEEEEEEECC
T ss_pred             c------CCCCEEEEeCC
Confidence            2      36999999874

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.42  E-value=0.47  Score=42.67  Aligned_cols=61  Identities=13%  Similarity=0.026  Sum_probs=45.3

Q ss_pred             ccchHHHHhhccCC-CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954          118 PVMLGEVLDVFSSS-RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS  180 (452)
Q Consensus       118 PVLl~Evl~~L~~~-~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~  180 (452)
                      +-++.+.-+.+... ..+..++|.=.|.|.|+...+....  ..|+|+|..+.+++.+++.+..
T Consensus        38 ~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          38 PWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             HHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhc
Confidence            44556666666421 2467999999999988865555543  3699999999999999988765

>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: ComEA-like
domain: KIF22, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.37  E-value=0.3  Score=38.48  Aligned_cols=43  Identities=19%  Similarity=0.147  Sum_probs=34.9

Q ss_pred             HHHhcCChHHHHHHHHHhCCCcchHHHHHHHHHHHhh-CCCCcHHHHHHH
Q 012954          261 DILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLR-GGLHSTGELVDL  309 (452)
Q Consensus       261 diLN~~se~eL~~Ifr~YGEE~~A~rIA~aIv~~R~~-~~i~TT~eLa~i  309 (452)
                      ..||+.|.++|..+ .     --....|++||++|.. ++|.+..||.++
T Consensus        25 ~~iNtAs~~eL~~l-p-----gig~~~A~~II~yR~~~G~f~sledL~~V   68 (91)
T d2edua1          25 DLLNEGSARDLRSL-Q-----RIGPKKAQLIVGWRELHGPFSQVEDLERV   68 (91)
T ss_dssp             HHHHHSCHHHHHHS-T-----TCCHHHHHHHHHHHHHHCCCSSGGGGGGS
T ss_pred             cccccCCHHHHhhC-C-----CCCHHHHHHHHHHHHHcCCCCCHHHHhcC
Confidence            36999999999885 1     1457799999999974 799999998754