Citrus Sinensis ID: 012956

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
MVPSRSRHLYDHMSIPSRRHHPSLLRPHQHPRPSCRLRRKLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKWGGHTENET
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHEEEHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccc
ccHHHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccc
mvpsrsrhlydhmsipsrrhhpsllrphqhprpscrlrRKLRHRRVLIRRHAYYIQLGMGSALETLCGqaygagqldMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFsgacgptwsgfsWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSvrtsnelgaahprtAKLSLVVAVFSSFLIGLTLSLILIVTrnqypalfssdpeVIDLVIDLTPLLALCIVInniqpvlsgvaIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDrirkwgghtenet
mvpsrsrhlydhmsipsrrhhpsllrphqhprpscrlrrklrhrrvLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAavagdrirkwgghtenet
MVPSRSRHLYDHMSIPSRRHHPSLLRPHQHPrpscrlrrklrhrrvlirrHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMvlaviaavalllhtilswllilklglglvgaavalnaSWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKWGGHTENET
*************************************RRKLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKW********
*********YDHMSIPSR*HH**********RPSCRLRRKLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAV****************
*********YDHMSIPSRRHHPSLLRPHQHPRPSCRLRRKLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKWGGHTENET
MVPSRSRHLYDHMSIPSRRHHPSLLRPHQHPRPSCRLRRKLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKWG*******
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVPSRSRHLYDHMSIPSRRHHPSLLRPHQHPRPSCRLRRKLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKWGGHTENET
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query452 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.889 0.792 0.466 1e-96
Q9SIA5476 MATE efflux family protei no no 0.871 0.827 0.376 1e-66
Q9SIA3476 MATE efflux family protei no no 0.849 0.806 0.382 2e-66
Q8GXM8476 MATE efflux family protei no no 0.871 0.827 0.355 7e-64
Q9SIA4476 MATE efflux family protei no no 0.873 0.829 0.355 6e-62
Q8RWF5483 MATE efflux family protei no no 0.862 0.807 0.352 1e-61
Q9SIA1477 MATE efflux family protei no no 0.865 0.819 0.352 4e-59
Q9LUH2477 MATE efflux family protei no no 0.840 0.796 0.330 1e-56
Q9LUH3469 MATE efflux family protei no no 0.836 0.805 0.324 2e-56
Q5RFD2570 Multidrug and toxin extru yes no 0.831 0.659 0.300 6e-40
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  354 bits (908), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/405 (46%), Positives = 264/405 (65%), Gaps = 3/405 (0%)

Query: 48  IRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQI 107
           I+  AY I LGM SA++T+CGQAYGA Q   MG+  QR+ ++ +  A+ L F+Y ++  I
Sbjct: 98  IQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPI 157

Query: 108 LSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTI 167
           L  +GQ+  I++    FA  MIPQ++A+AL  PM +FLQAQ+ +  LA ++    LLHT+
Sbjct: 158 LKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTL 217

Query: 168 LSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIF-SGACGPTWSGFSWKAFHSLWSFV 226
           L+WL+   L  GL+GAA+ L+ SWW +     +YI  S  C  TW+GFS +AF  +W + 
Sbjct: 218 LTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYF 277

Query: 227 RLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSV 286
           +L++ASAVMLC+EIWY   L++ +G L N  +S+  +SICM  L W     +G++AA+SV
Sbjct: 278 KLTVASAVMLCLEIWYNQGLVIISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISV 337

Query: 287 RTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDL 346
           R SNELGA +PR A LS+VV   ++ LI   L +I++V R      F+SD EVI  V DL
Sbjct: 338 RVSNELGAGNPRVAMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDL 397

Query: 347 TPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGI 406
            PLLA+ I +N IQP+LSGVAIG+GWQA VAYVN+  YY+ G+P+G +LG+   L V GI
Sbjct: 398 FPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGI 457

Query: 407 WCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKWGGHTENE 451
           W GM+ G ILQT  +  +  KTNW  E   A  R++     TEN+
Sbjct: 458 WWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQRVKT--SATENQ 500
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
225470571544 PREDICTED: protein TRANSPARENT TESTA 12- 0.896 0.744 0.727 1e-171
224127997470 predicted protein [Populus trichocarpa] 0.891 0.857 0.729 1e-171
296083409 1152 unnamed protein product [Vitis vinifera] 0.896 0.351 0.727 1e-170
356566004509 PREDICTED: protein TRANSPARENT TESTA 12- 0.880 0.781 0.723 1e-168
255574013531 multidrug resistance pump, putative [Ric 0.900 0.766 0.737 1e-167
356497730518 PREDICTED: protein TRANSPARENT TESTA 12- 0.904 0.789 0.699 1e-165
357485681517 Protein TRANSPARENT TESTA [Medicago trun 0.898 0.785 0.701 1e-161
225470573473 PREDICTED: protein TRANSPARENT TESTA 12- 0.871 0.832 0.693 1e-160
357517321512 Protein TRANSPARENT TESTA [Medicago trun 0.869 0.767 0.697 1e-160
15231577500 mate efflux domain-containing protein [A 0.893 0.808 0.678 1e-158
>gi|225470571|ref|XP_002272174.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 297/408 (72%), Positives = 352/408 (86%), Gaps = 3/408 (0%)

Query: 47  LIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQ 106
           +I   ++ + LGMGSALETLCGQA+GAGQLDM+GVY+QRSW+IL +TA++L F+YIF+ +
Sbjct: 134 VIAGFSFGVMLGMGSALETLCGQAFGAGQLDMLGVYMQRSWVILTSTAVLLSFLYIFSAR 193

Query: 107 ILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHT 166
           +L LIGQT+ IS  AG FA WM+PQLFAYA+NFP+ KFLQAQSKIMV+AVIAAV L+LHT
Sbjct: 194 LLKLIGQTEAISKEAGMFAVWMLPQLFAYAVNFPLAKFLQAQSKIMVMAVIAAVVLVLHT 253

Query: 167 ILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFV 226
           + SWLL+LKL  GLVGAAV LNASW  ID+ +LLYIFSG CG  W+GFSWKAF SLW FV
Sbjct: 254 VFSWLLMLKLQWGLVGAAVVLNASWVLIDVAQLLYIFSGTCGRAWTGFSWKAFQSLWGFV 313

Query: 227 RLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSV 286
           RLSLASAVMLC+E+WYFMALILFAGYLKNA++SV  LSICMNILGW+ MV++G NAA+SV
Sbjct: 314 RLSLASAVMLCLEVWYFMALILFAGYLKNAEISVDALSICMNILGWTVMVALGCNAAISV 373

Query: 287 RTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDL 346
           R SNELGA HPRTAK ++VV V +SFLIGL LS ILI+ R QYPALFS   EV +LV +L
Sbjct: 374 RVSNELGATHPRTAKFAVVVVVITSFLIGLVLSAILIIFRKQYPALFSDSEEVEELVDEL 433

Query: 347 TPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGI 406
           TPLLA CIVINN+QPVLSGVAIGAGWQA VA+VNI CYYLFG+PLGL+LGY VGL VKGI
Sbjct: 434 TPLLAFCIVINNVQPVLSGVAIGAGWQAFVAWVNIACYYLFGVPLGLVLGYKVGLGVKGI 493

Query: 407 WCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKWGGHT---ENE 451
           WCGML GT++QTCV+FG++Y+TNWNKEA++AGDRI+KWGG+    EN+
Sbjct: 494 WCGMLSGTVVQTCVLFGMVYRTNWNKEASIAGDRIKKWGGNEAGREND 541

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224127997|ref|XP_002329229.1| predicted protein [Populus trichocarpa] gi|222871010|gb|EEF08141.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296083409|emb|CBI23362.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356566004|ref|XP_003551225.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|255574013|ref|XP_002527924.1| multidrug resistance pump, putative [Ricinus communis] gi|223532699|gb|EEF34481.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356497730|ref|XP_003517712.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|357485681|ref|XP_003613128.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355514463|gb|AES96086.1| Protein TRANSPARENT TESTA [Medicago truncatula] Back     alignment and taxonomy information
>gi|225470573|ref|XP_002272214.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357517321|ref|XP_003628949.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355522971|gb|AET03425.1| Protein TRANSPARENT TESTA [Medicago truncatula] Back     alignment and taxonomy information
>gi|15231577|ref|NP_189291.1| mate efflux domain-containing protein [Arabidopsis thaliana] gi|1402878|emb|CAA66809.1| hypothetical protein [Arabidopsis thaliana] gi|9293938|dbj|BAB01841.1| unnamed protein product [Arabidopsis thaliana] gi|16323121|gb|AAL15295.1| AT3g26590/MFE16_11 [Arabidopsis thaliana] gi|25141209|gb|AAN73299.1| At3g26590/MFE16_11 [Arabidopsis thaliana] gi|332643662|gb|AEE77183.1| mate efflux domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.568 0.514 0.712 1.2e-136
TAIR|locus:2144421498 AT5G38030 "AT5G38030" [Arabido 0.884 0.803 0.615 4.2e-134
TAIR|locus:2028115515 AT1G23300 "AT1G23300" [Arabido 0.865 0.759 0.624 5.9e-128
TAIR|locus:2010401522 RSH2 "AT1G12950" [Arabidopsis 0.887 0.768 0.597 3.3e-127
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.873 0.816 0.508 1.5e-106
TAIR|locus:2126036542 AT4G00350 "AT4G00350" [Arabido 0.573 0.477 0.503 6.5e-106
TAIR|locus:2036848501 AT1G61890 "AT1G61890" [Arabido 0.867 0.782 0.465 3.7e-96
TAIR|locus:2089955506 AT3G21690 "AT3G21690" [Arabido 0.869 0.776 0.456 9.7e-96
TAIR|locus:2027322503 AT1G11670 "AT1G11670" [Arabido 0.862 0.775 0.452 2.3e-94
TAIR|locus:2206960494 AT1G33110 "AT1G33110" [Arabido 0.862 0.789 0.430 1.6e-86
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 997 (356.0 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
 Identities = 183/257 (71%), Positives = 220/257 (85%)

Query:   190 SWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILF 249
             SW FID+ +L+YIFSG CG  WSGFSW+AFH+LWSFVRLSLASAVMLC+E+WYFMA+ILF
Sbjct:   234 SWCFIDMAQLVYIFSGTCGEAWSGFSWEAFHNLWSFVRLSLASAVMLCLEVWYFMAIILF 293

Query:   250 AGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVF 309
             AGYLKNA++SVA LSICMNILGW+ M++IGMN AVSVR SNELGA HPRTAK SL+VAV 
Sbjct:   294 AGYLKNAEISVAALSICMNILGWTAMIAIGMNTAVSVRVSNELGANHPRTAKFSLLVAVI 353

Query:   310 SSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIG 369
             +S LIG  +S+IL++ R+QYP+LF  D +VI LV +LTP+LAL IVINN+QPVLSGVA+G
Sbjct:   354 TSTLIGFIVSMILLIFRDQYPSLFVKDEKVIILVKELTPILALSIVINNVQPVLSGVAVG 413

Query:   370 AGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTN 429
             AGWQA VAYVNI CYY+FGIP GL+LGY +   V GIWCGML GT++QT V+  +I KTN
Sbjct:   414 AGWQAVVAYVNIACYYVFGIPFGLLLGYKLNYGVMGIWCGMLTGTVVQTIVLTWMICKTN 473

Query:   430 WNKEAAVAGDRIRKWGG 446
             W+ EA++A DRIR+WGG
Sbjct:   474 WDTEASMAEDRIREWGG 490
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027322 AT1G11670 "AT1G11670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q10085YAO6_SCHPONo assigned EC number0.31230.85610.8505yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-149
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 5e-52
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 3e-47
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 1e-35
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 3e-34
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 2e-29
pfam01554161 pfam01554, MatE, MatE 2e-27
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-26
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-26
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 3e-24
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 1e-20
pfam01554161 pfam01554, MatE, MatE 7e-20
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-19
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 3e-17
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 3e-16
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 3e-15
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 2e-13
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 8e-12
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 4e-11
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 6e-11
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 5e-09
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 1e-08
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 3e-07
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 4e-07
cd13134 438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-06
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 2e-06
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 5e-06
cd12082 420 cd12082, MATE_like, Multidrug and toxic compound e 7e-06
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 5e-05
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 2e-04
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 3e-04
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 5e-04
COG0534 455 COG0534, NorM, Na+-driven multidrug efflux pump [D 9e-04
COG0728518 COG0728, MviN, Uncharacterized membrane protein, p 0.002
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 0.003
cd13148441 cd13148, MATE_like_3, Uncharacterized subfamily of 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  431 bits (1110), Expect = e-149
 Identities = 174/385 (45%), Positives = 260/385 (67%), Gaps = 2/385 (0%)

Query: 52  AYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLI 111
            + I LG+ SAL+TLCGQA+GA    ++GVYLQR+ +IL+   + +  +++  + IL L+
Sbjct: 52  GFSILLGLASALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLL 111

Query: 112 GQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWL 171
           GQ  EI+  AG +  W+IP LFAYAL  P+ ++LQAQ  ++ L  I+ VALLL+ +L++L
Sbjct: 112 GQDPEIARLAGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYL 171

Query: 172 LILKLGLGLVGAAVALNASWWFIDITRLLYI-FSGACGPTWSGFSWKAFHSLWSFVRLSL 230
           L+  LGLG +GAA+A + S+W I +  LLYI FS     TW GFS +AF     F++L++
Sbjct: 172 LVFVLGLGFIGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAI 231

Query: 231 ASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSN 290
            SA+MLC+E W F  L+L AG L    +++A  SIC+       M+ +G++ A SVR  N
Sbjct: 232 PSALMLCLEWWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGN 290

Query: 291 ELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLL 350
           ELGA +P+ AKL+ +VA+  S +IG+ ++++L+V R+ +  LF+SD EVI LV DL P+L
Sbjct: 291 ELGAGNPKRAKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPIL 350

Query: 351 ALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGM 410
           AL  + + +Q VLSGV  G G Q   AYVN+  YYL G+P+GL+L +++GL +KG+W G+
Sbjct: 351 ALFQIFDGLQAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGL 410

Query: 411 LCGTILQTCVIFGIIYKTNWNKEAA 435
           + G ILQ  ++  II +T+W+KEA 
Sbjct: 411 IAGLILQAVILLLIILRTDWDKEAE 435

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240553 cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 452
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.96
PRK10459492 colanic acid exporter; Provisional 99.93
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.92
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.91
COG2244480 RfbX Membrane protein involved in the export of O- 99.91
PRK00187 464 multidrug efflux protein NorA; Provisional 99.9
PRK10189 478 MATE family multidrug exporter; Provisional 99.9
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.89
PRK01766 456 multidrug efflux protein; Reviewed 99.89
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.79
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.77
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.53
TIGR01695502 mviN integral membrane protein MviN. This model re 99.51
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.42
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 99.37
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.37
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.37
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.35
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.32
PRK15099 416 O-antigen translocase; Provisional 99.11
PRK10459492 colanic acid exporter; Provisional 99.08
COG2244480 RfbX Membrane protein involved in the export of O- 98.88
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.7
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.67
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.48
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.03
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.0
COG4267467 Predicted membrane protein [Function unknown] 98.0
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.8
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.76
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.43
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 97.34
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.03
COG4267 467 Predicted membrane protein [Function unknown] 88.01
TIGR00822265 EII-Sor PTS system, mannose/fructose/sorbose famil 82.72
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-51  Score=399.27  Aligned_cols=395  Identities=27%  Similarity=0.403  Sum_probs=367.1

Q ss_pred             hhccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHH
Q 012956           39 RKLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEI  117 (452)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~  117 (452)
                      ++++.+.+ ...+...+..|++.|.++.+||++|+||++++++..++++.+.++++++.+++ ..+.+|++.+++.+++.
T Consensus        53 aav~la~~-i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v  131 (455)
T COG0534          53 AAVGLANP-IFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEV  131 (455)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhH
Confidence            45666644 45556688899999999999999999999999999999999999999888776 89999999999998889


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH-hC-CchhhHHHHHHHHHHHHH
Q 012956          118 SNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILK-LG-LGLVGAAVALNASWWFID  195 (452)
Q Consensus       118 ~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~-~~-~gv~Gaala~~i~~~~~~  195 (452)
                      .+.+.+|+++..++.|+..++.+..+.+|+.||+|.+++.++++.++|+++|++|+++ ++ +|+.|+++||++++.+..
T Consensus       132 ~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~  211 (455)
T COG0534         132 LELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGA  211 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998 68 999999999999999999


Q ss_pred             HHHHHHHHhcCC--CCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHH
Q 012956          196 ITRLLYIFSGAC--GPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWS  273 (452)
Q Consensus       196 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~  273 (452)
                      ++..+++++++.  .....+..+.+++.+|++++.|+|..++++.+.......+.+.+++|  +.++|+|+++.++.++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~  289 (455)
T COG0534         212 LLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFI  289 (455)
T ss_pred             HHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHH
Confidence            999999988753  33323333446688999999999999999999999999999999999  55677999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHH
Q 012956          274 NMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALC  353 (452)
Q Consensus       274 ~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~  353 (452)
                      .++..|++++.++.+++++|+||+|++++..+.+..+++.++...+++++++++++.++|++|+|+.+.+..++++.++.
T Consensus       290 ~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~  369 (455)
T COG0534         290 FMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALF  369 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhhcChHHH
Q 012956          354 IVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKE  433 (452)
Q Consensus       354 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~  433 (452)
                      .++++.+.+..+.+||.||++.+++.++.+.|.+.+|+.++++... +|..|+|+++..++.+..+...+++++++|+++
T Consensus       370 ~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (455)
T COG0534         370 QPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRK  448 (455)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            9999999999999999999999999999999999999999998766 899999999999999999999999999888887


Q ss_pred             HHHH
Q 012956          434 AAVA  437 (452)
Q Consensus       434 ~~~~  437 (452)
                      ..+.
T Consensus       449 ~~~~  452 (455)
T COG0534         449 AVAA  452 (455)
T ss_pred             hhhc
Confidence            6543

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 5e-07
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 10/231 (4%)
Query: 191 WWFIDITRLLYIFSG---ACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALI 247
           +W + +  L YI +    A    +  F       L    RL    A  L  E+  F  + 
Sbjct: 203 YWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVA 262
Query: 248 LFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVA 307
           L    L +    VA   + +N      M  + + AAVS+R  ++LG    + A ++  V 
Sbjct: 263 LLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVG 320
Query: 308 VFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVA 367
           + +        +L+ ++ R Q   L++ +  V+ L + L    A+   ++ +Q V +G  
Sbjct: 321 LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSL 380
Query: 368 IGAGWQATVAYVNIGCYYLFGIPLGLILGYL-----VGLEVKGIWCGMLCG 413
            G      + +     Y++ G+P G ILG         L  KG W G + G
Sbjct: 381 RGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIG 431

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 2e-62
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  208 bits (531), Expect = 2e-62
 Identities = 85/383 (22%), Positives = 155/383 (40%), Gaps = 14/383 (3%)

Query: 57  LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQE 116
           +G+  AL  +  Q  GAG+   +   + +  I+ +  ++ ++ +    Q I+  +   + 
Sbjct: 65  VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEA 124

Query: 117 ISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLIL-K 175
           ++     +   +I  + AY L   +  F    S      VI  + LLL+  L+W+ +  K
Sbjct: 125 MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGK 184

Query: 176 LG---LGLVGAAVALNASWWFIDITRLLYIFSG---ACGPTWSGFSWKAFHSLWSFVRLS 229
            G   LG VG  VA    +W + +  L YI +    A    +  F       L    RL 
Sbjct: 185 FGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244

Query: 230 LASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTS 289
              A  L  E+  F  + L    L      VA   + +N      M  + + AAVS+R  
Sbjct: 245 FPVAAALFFEVTLFAVVALLVAPL--GSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVG 302

Query: 290 NELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPL 349
           ++LG    + A ++  V + +        +L+ ++ R Q   L++ +  V+ L + L   
Sbjct: 303 HKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLF 362

Query: 350 LALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYL-----VGLEVK 404
            A+   ++ +Q V +G   G      + +     Y++ G+P G ILG         L  K
Sbjct: 363 AAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAK 422

Query: 405 GIWCGMLCGTILQTCVIFGIIYK 427
           G W G + G      ++   +Y 
Sbjct: 423 GFWLGFIIGLSAAALMLGQRLYW 445

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query452
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 99.78
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1.9e-42  Score=342.99  Aligned_cols=386  Identities=21%  Similarity=0.337  Sum_probs=347.0

Q ss_pred             hccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHH
Q 012956           40 KLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISN  119 (452)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  119 (452)
                      +++.+..+ ......+..|++.+..+.++|++|++|+++.++.+++++.+..+++++++++..+.+|++.+++.+++..+
T Consensus        49 ~~~~~~~i-~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  127 (460)
T 3mkt_A           49 AVSIAASI-WLPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT  127 (460)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHH
Confidence            34444444 34445667899999999999999999999999999999999999999987777888999888888999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH-h---CCchhhHHHHHHHHHHHHH
Q 012956          120 AAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILK-L---GLGLVGAAVALNASWWFID  195 (452)
Q Consensus       120 ~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~-~---~~gv~Gaala~~i~~~~~~  195 (452)
                      .+..|+++.+++.++..+....++.+|+.||++.++..++++.++|++++++++.. +   ++|+.|+++|+.+++.+..
T Consensus       128 ~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~  207 (460)
T 3mkt_A          128 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIML  207 (460)
T ss_dssp             HHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999975 4   6999999999999999999


Q ss_pred             HHHHHHHHhcCCCCC---CCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHH
Q 012956          196 ITRLLYIFSGACGPT---WSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGW  272 (452)
Q Consensus       196 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~  272 (452)
                      ++..+++++++...+   ++++...+++..|+++++|+|..++++...+....++.+++.+|  +.++++|+++.++.++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~  285 (460)
T 3mkt_A          208 LLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSL  285 (460)
T ss_dssp             HHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHH
Confidence            988888777632211   12222345678999999999999999999999999999999997  4457799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHH
Q 012956          273 SNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLAL  352 (452)
Q Consensus       273 ~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~  352 (452)
                      ..++..+++++..|.+++++|++|.+++++..+++.+.++.++++.++++.++++++.++|.+|+++.+.+.++++++++
T Consensus       286 ~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~  365 (460)
T 3mkt_A          286 VFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAI  365 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHh----hC-CChhHHHHHHHHHHHHHHHHHHHHHhh
Q 012956          353 CIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYL----VG-LEVKGIWCGMLCGTILQTCVIFGIIYK  427 (452)
Q Consensus       353 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~  427 (452)
                      +.++.+++....+.+++.||+|.+++.++++.|++++|+.+++...    ++ +|+.|+|+++.+++.+..++..++++|
T Consensus       366 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~  445 (460)
T 3mkt_A          366 YQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW  445 (460)
T ss_dssp             HHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999989999999999766    56 999999999999999998887666554


Q ss_pred             c
Q 012956          428 T  428 (452)
Q Consensus       428 ~  428 (452)
                      +
T Consensus       446 ~  446 (460)
T 3mkt_A          446 L  446 (460)
T ss_dssp             S
T ss_pred             H
Confidence            3
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00