Citrus Sinensis ID: 012972

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
Protein Sequence
MKMAFLTGKASFFVLVLVLVSLRSISALSQDGSGRDALKLILGEHNLGPLKNGINEDAVAPGPEMLEPLLLASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKVLSSVLFILNAFFSPFFLSFRIFQIKILQDYTI
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHcccEEEcccccccccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHccHHHHHEEEHHHHHcccccccccccccccccHHEEEcccccccccccccHHHccccccccccEEEEccccccccccccccEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEccccHHHHHHHcEEHHHHHccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mkmafltgKASFFVLVLVLVSLRSISalsqdgsgRDALKLILgehnlgplknginedavapgpemleplllasnrtkrpdILNHFRRYqggwditnkhywasvgFTGASAFILAVIWFISFGLVLVAHHCcgwrinikgkesasSQRICLILLIVFTCAAAIGCILLsvgqdefhgEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVflpsavmddIDKLNRDLSTAANTladktsensAKIRKVFNAVRSALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMamdewvdhphaetalsnilpcvdqrttnksliQSKEVITDIVNVVNQFVYNiananpsqdyiyyynqtgpvmpplcypydsqlqdrqcgsYEVSIANASKVLSSVLFILNAffspfflsFRIFQIKILQDYTI
Flexible Loop (DISEMBL)
mkmafltgkaSFFVLVLVLVSLRSISALSQDGSGRDALKLILGEHNLGPLKNGINEDAVAPGPEMLEPLLLASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAAntladktsensakIRKVFNAVRSALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKVLSSVLFILNAFFSPFFLSFRIFQIKILQDYTI
Low Complexity Region (SEG)
MKMAFLTGKasffvlvlvlvslrsisalsQDGSGRDALKLILGEHNLGPLKNGINEDAVAPGPEMLEPLLLASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSALITVAAlmlllsiiglflsilRHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKVLSSVLFILNAffspfflsfrifQIKILQDYTI
Disordered region (IsUnstruct)
****FLTGKASFFVLVLVLVSLRSISALSQD**GRDALKLILGEHNLGPLKNGI*************PLLLASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRD*****************KIRKVFNAVRSALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKVLSSVLFILNAFFSPFFLSFRIFQIKILQDY**
Disordered Region (DISOPRED)
********KASFFVLVLVLVSLRSISA******************N*************************ASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINI***ESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLST***T***KTSENSAKIRKVFNAVRSALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKVLSSVLFILNAFFSPFFLSFRIFQIKILQDYT*
Disordered Region (DISEMBL)
MKMAFLTGKASFFVLVLVLVSLRSISALSQDGSGRDALKLILGEHNLGPLKNGINEDAVAPGPEMLEPLLLASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKVLSSVLFILNAFFSPFFLSFRIFQIKILQDYTI
Disordered Region (DISPRO)
*KMAFLTGKASFFVLVLVLVSLRSISALSQDGSGRDALKLILGEHNLGPLKNGINEDAVAP****LEPLLLASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKVLSSVLFILNAFFSPFFLSFRIFQIKILQDYTI
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMAFLTGKASFFVLVLVLVSLRSISALSQDGSGRDALKLILGEHNLGPLKNGINEDAVAPGPEMLEPLLLASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDxxxxxxxxxxxxxxxxxxxxxNSAKIRKVFNAVRSALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKVLSSVLFILNAFFSPFFLSFRIFQIKILQDYTI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
224108357	564	predicted protein [Populus trichocarpa]	0.922	0.739	0.693	1e-165
356524559	559	PREDICTED: uncharacterized protein LOC10	0.902	0.729	0.660	1e-159
359472887	536	PREDICTED: uncharacterized protein LOC10	0.873	0.736	0.712	1e-154
297737727	701	unnamed protein product [Vitis vinifera]	0.873	0.563	0.712	1e-154
356566456	530	PREDICTED: uncharacterized protein LOC10	0.902	0.769	0.669	1e-153
449434556	568	PREDICTED: uncharacterized protein LOC10	0.909	0.723	0.660	1e-153
110740574	557	hypothetical protein [Arabidopsis thalia	0.900	0.730	0.65	1e-152
145337400	557	uncharacterized protein [Arabidopsis tha	0.900	0.730	0.65	1e-152
356536222	550	PREDICTED: uncharacterized protein LOC10	0.929	0.763	0.651	1e-149
297838929	557	hypothetical protein ARALYDRAFT_476243 [	0.860	0.698	0.649	1e-149

>gi|224108357|ref|XP_002314819.1| predicted protein [Populus trichocarpa] gi|222863859|gb|EEF00990.1| predicted protein [Populus trichocarpa]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 294/424 (69%), Positives = 349/424 (82%), Gaps = 7/424 (1%)

Query: 1   MKMAFLTGKASFFVLVLVLVSLRSISALSQDGSGRDALKLILGEHNLGPLKNGINEDAV- 59
           MKM FL  +  F +LV+ L    S+ AL  +G  +D LK ILG+ NLGP +NGI+E A  
Sbjct: 1   MKM-FLVPRFGFLLLVVSLSC--SVLALPGNGPAKDPLKYILGQDNLGPFRNGISETAAR 57

Query: 60  APGPEML---EPLLLASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVI 116
           APGP        L+LA+ RT RPDIL+ F+ Y+GGW+IT+ HYWASVGFTGA+ FILA +
Sbjct: 58  APGPSDYGSNNTLVLAAKRTDRPDILHGFKHYRGGWNITDPHYWASVGFTGAAGFILAFL 117

Query: 117 WFISFGLVLVAHHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHG 176
           WF  FG  LVAHHC  WRINIK K S+ SQRI LI+LI+FTCAAAIGCILL VGQD+FHG
Sbjct: 118 WFFLFGFALVAHHCFKWRINIKDKGSSRSQRISLIMLILFTCAAAIGCILLCVGQDDFHG 177

Query: 177 EAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAAN 236
           EAM+TLKYVVNQSDYTV+TL+NVTEYLSLAKTIN+AQ+ LPS VMDDIDKLN DL+ AA+
Sbjct: 178 EAMNTLKYVVNQSDYTVQTLKNVTEYLSLAKTINIAQLVLPSNVMDDIDKLNVDLNAAAD 237

Query: 237 TLADKTSENSAKIRKVFNAVRSALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLL 296
           TL +KTSEN+ KI KVFNAVRSALITVAA+ML+L+++G  LSIL H+HAIHIF++SGWLL
Sbjct: 238 TLTEKTSENAGKIVKVFNAVRSALITVAAVMLILALLGFLLSILGHQHAIHIFVVSGWLL 297

Query: 297 VAITFILCGVFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEV 356
           VA+TFILCGVF++LNNAISDTC+AM+EWV++PHA +ALS+ILPCVDQRTTN +L+QSKEV
Sbjct: 298 VAVTFILCGVFILLNNAISDTCLAMEEWVENPHAASALSSILPCVDQRTTNNTLVQSKEV 357

Query: 357 ITDIVNVVNQFVYNIANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIAN 416
           ITDIVNVVN ++Y  ANANPSQ    YYNQ+GP MPPLCYP+DS  QDRQC   EVS+AN
Sbjct: 358 ITDIVNVVNTYIYTFANANPSQTEFNYYNQSGPSMPPLCYPFDSLYQDRQCEPREVSMAN 417

Query: 417 ASKV 420
           AS V
Sbjct: 418 ASVV 421

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524559|ref|XP_003530896.1| PREDICTED: uncharacterized protein LOC100796983 [Glycine max]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/409 (66%), Positives = 329/409 (80%), Gaps = 1/409 (0%)

Query: 12  FFVLVLVLVSLRSISALSQDGSGRDALKLILGEHNLGPLKNGINEDAVAPGPEMLEPLLL 71
            F+  LVL S+  +SALS  GS +  +K ILGE NLGP KN + + A A  P     L+L
Sbjct: 15  LFIFPLVL-SVHLLSALSPTGSSKHPIKFILGEDNLGPWKNEVTQVAQAARPRTKGTLVL 73

Query: 72  ASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCC 131
           A+NRT RPDIL  FRRY GGWDI N+HYWASVGFTG + F LAV+WFISFGL LV H CC
Sbjct: 74  AANRTNRPDILQGFRRYHGGWDIANRHYWASVGFTGVAGFTLAVLWFISFGLALVIHLCC 133

Query: 132 GWRINIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDY 191
           GW INIK K S   QRI L+LL++FTC    GCI+LS GQD+FHGEA+ TL YVVNQSDY
Sbjct: 134 GWGINIKDKGSNRLQRIWLVLLLLFTCVVTTGCIVLSFGQDKFHGEAVDTLHYVVNQSDY 193

Query: 192 TVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAKIRK 251
           TV+TLRNVTEYL+L KTI VA++FLPS +MDDIDKLN DL +AA+TL+ +T+ENS KIRK
Sbjct: 194 TVQTLRNVTEYLALTKTIVVAEMFLPSNIMDDIDKLNADLDSAADTLSKQTNENSFKIRK 253

Query: 252 VFNAVRSALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCGVFVILN 311
           VFNA R ALI +AA+M+LL++IGL LSIL ++HAI IF+++GWLLVA TFI CGVF ILN
Sbjct: 254 VFNAARLALIMMAAVMILLAVIGLILSILGYQHAILIFVITGWLLVATTFIFCGVFTILN 313

Query: 312 NAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNI 371
           NAI DTCMAM EWV++PHAE+ALS+ILPCVDQRTTNK+L QSK+V+T+IV++VN+F+Y+ 
Sbjct: 314 NAICDTCMAMGEWVENPHAESALSHILPCVDQRTTNKTLFQSKQVVTNIVSIVNRFIYDT 373

Query: 372 ANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKV 420
           A+A+PSQ  + YYNQ+GP MPPLCYP+DSQ ++ QC   EVS+ANAS V
Sbjct: 374 ADASPSQGSMNYYNQSGPAMPPLCYPFDSQFREHQCTPQEVSLANASLV 422

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472887|ref|XP_002280363.2| PREDICTED: uncharacterized protein LOC100254373 [Vitis vinifera]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 285/400 (71%), Positives = 331/400 (82%), Gaps = 5/400 (1%)

Query: 24  SISALSQDGSGRDALKLILGEHNLGPLKNGINEDAVAPGPEMLEP---LLLASNRTKRPD 80
           SISA+S     R     ILGE NLG  K  I+  A APGP    P   L+LA+ RT RPD
Sbjct: 20  SISAISPSLDWRS--NFILGEENLGSWKGEISRGAQAPGPANNGPQSTLVLAAKRTNRPD 77

Query: 81  ILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGK 140
           IL  F+RY+GGWDITN+HYWASVGFTGA  FILA +W +SFGL LV H+CCGWRIN KG 
Sbjct: 78  ILRGFKRYRGGWDITNRHYWASVGFTGAFGFILAFLWLVSFGLALVVHYCCGWRINAKGN 137

Query: 141 ESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVT 200
            S  S+R+ LI+LI+FTCAAAIGCILLS+GQDEFH EA+HTL YVVNQSDYTV+TL NVT
Sbjct: 138 GSDHSERVSLIMLILFTCAAAIGCILLSIGQDEFHREALHTLHYVVNQSDYTVQTLINVT 197

Query: 201 EYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSAL 260
           +YL+LAKTI VAQV LPS V DDIDKLN DL+ AAN L +KTSENSAKI+KVFN V+SAL
Sbjct: 198 QYLTLAKTIKVAQVLLPSNVNDDIDKLNVDLNKAANDLKEKTSENSAKIKKVFNTVQSAL 257

Query: 261 ITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMA 320
           ITVAA+MLLLS++G FLSIL H+HAIH+FI+ GWLLV ITF+LCGVFVILNNAI+DTCMA
Sbjct: 258 ITVAAVMLLLSLLGFFLSILGHQHAIHVFIVGGWLLVVITFMLCGVFVILNNAITDTCMA 317

Query: 321 MDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANANPSQDY 380
           M EW+D+P +E+ALSNILPCVDQRT+N++LI+SKEV+T+IVNVVNQF+Y  ANANPS   
Sbjct: 318 MGEWMDNPQSESALSNILPCVDQRTSNQTLIKSKEVVTNIVNVVNQFIYTYANANPSPTD 377

Query: 381 IYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKV 420
           + YYNQ+GP+MPPLCYPYDS LQDRQCGS EVS+ NAS V
Sbjct: 378 LNYYNQSGPLMPPLCYPYDSNLQDRQCGSIEVSMENASVV 417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737727|emb|CBI26928.3| unnamed protein product [Vitis vinifera]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 285/400 (71%), Positives = 331/400 (82%), Gaps = 5/400 (1%)

Query: 24  SISALSQDGSGRDALKLILGEHNLGPLKNGINEDAVAPGPEMLEP---LLLASNRTKRPD 80
           SISA+S     R     ILGE NLG  K  I+  A APGP    P   L+LA+ RT RPD
Sbjct: 142 SISAISPSLDWRS--NFILGEENLGSWKGEISRGAQAPGPANNGPQSTLVLAAKRTNRPD 199

Query: 81  ILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGK 140
           IL  F+RY+GGWDITN+HYWASVGFTGA  FILA +W +SFGL LV H+CCGWRIN KG 
Sbjct: 200 ILRGFKRYRGGWDITNRHYWASVGFTGAFGFILAFLWLVSFGLALVVHYCCGWRINAKGN 259

Query: 141 ESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVT 200
            S  S+R+ LI+LI+FTCAAAIGCILLS+GQDEFH EA+HTL YVVNQSDYTV+TL NVT
Sbjct: 260 GSDHSERVSLIMLILFTCAAAIGCILLSIGQDEFHREALHTLHYVVNQSDYTVQTLINVT 319

Query: 201 EYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSAL 260
           +YL+LAKTI VAQV LPS V DDIDKLN DL+ AAN L +KTSENSAKI+KVFN V+SAL
Sbjct: 320 QYLTLAKTIKVAQVLLPSNVNDDIDKLNVDLNKAANDLKEKTSENSAKIKKVFNTVQSAL 379

Query: 261 ITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMA 320
           ITVAA+MLLLS++G FLSIL H+HAIH+FI+ GWLLV ITF+LCGVFVILNNAI+DTCMA
Sbjct: 380 ITVAAVMLLLSLLGFFLSILGHQHAIHVFIVGGWLLVVITFMLCGVFVILNNAITDTCMA 439

Query: 321 MDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANANPSQDY 380
           M EW+D+P +E+ALSNILPCVDQRT+N++LI+SKEV+T+IVNVVNQF+Y  ANANPS   
Sbjct: 440 MGEWMDNPQSESALSNILPCVDQRTSNQTLIKSKEVVTNIVNVVNQFIYTYANANPSPTD 499

Query: 381 IYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKV 420
           + YYNQ+GP+MPPLCYPYDS LQDRQCGS EVS+ NAS V
Sbjct: 500 LNYYNQSGPLMPPLCYPYDSNLQDRQCGSIEVSMENASVV 539

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566456|ref|XP_003551447.1| PREDICTED: uncharacterized protein LOC100819610 [Glycine max]

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/411 (66%), Positives = 334/411 (81%), Gaps = 3/411 (0%)

Query: 12  FFVLVLVLVSLRSISALSQDGSGRDALKLILG--EHNLGPLKNGINEDAVAPGPEMLEPL 69
            F+  LVL S+  ISALS  GS + ++K ILG    NLGP KNG+ + A A  P     L
Sbjct: 13  LFIFPLVL-SVHLISALSPTGSAKHSIKFILGWRGQNLGPWKNGVTQVAQAARPRTKGTL 71

Query: 70  LLASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHH 129
           +LA+NRT RPDIL+ FRRYQGGWDI N+HYWASVGFTG +   LAV+WFISFGL LV H 
Sbjct: 72  VLAANRTNRPDILHGFRRYQGGWDIANRHYWASVGFTGVAGLTLAVLWFISFGLALVIHL 131

Query: 130 CCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQS 189
           CCGW INIK K S   QRI  +LL++FTC    GCI+LS GQD+FHGEA+ TL YVVNQS
Sbjct: 132 CCGWGINIKDKGSNRLQRIWFVLLLLFTCVVTTGCIVLSFGQDKFHGEAVDTLHYVVNQS 191

Query: 190 DYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAKI 249
           DYTV+TLRNVTEYL+LAKTI VA++FLPS +MDDIDKLN DL++AANTL+++T ENS KI
Sbjct: 192 DYTVQTLRNVTEYLALAKTIAVAEMFLPSNIMDDIDKLNVDLNSAANTLSEQTKENSFKI 251

Query: 250 RKVFNAVRSALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCGVFVI 309
           RKVFNAVR ALI ++A+MLLL++IGL LSIL ++HAI +F++SGWLLVA TFILCGVF I
Sbjct: 252 RKVFNAVRLALIMMSAMMLLLALIGLILSILGYQHAILVFVISGWLLVATTFILCGVFTI 311

Query: 310 LNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVY 369
           LNNAI DTCMAM EWV++PHAE+ALSNILPCVDQRTTNK+L QSK+V+T+IV++VN+F+Y
Sbjct: 312 LNNAICDTCMAMGEWVENPHAESALSNILPCVDQRTTNKTLFQSKQVVTNIVSIVNRFIY 371

Query: 370 NIANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKV 420
           + A+A+P+Q  + YYNQ+GP MPPLCYP+DSQ ++RQC   EVS ANAS V
Sbjct: 372 DTADASPAQGSMNYYNQSGPAMPPLCYPFDSQFRERQCTPQEVSSANASLV 422

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434556|ref|XP_004135062.1| PREDICTED: uncharacterized protein LOC101211567 [Cucumis sativus]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 274/415 (66%), Positives = 335/415 (80%), Gaps = 4/415 (0%)

Query: 10  ASFFVLVLV-LVSLRSISALSQDGSGRDALKLILGEHNLGPLKNGINEDAVAPGP---EM 65
           ASFF+L  V   +   + AL  D   +D+ K ILG+ NL P KN I E A  PG      
Sbjct: 6   ASFFLLFFVGFATFSWVLALPHDVLPKDSGKFILGQENLVPWKNEILETAEGPGSAKNNS 65

Query: 66  LEPLLLASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVL 125
             PL+LA+NRTKRPDIL+ FR Y+GGWDI N++YWASVGFTGA+ FIL++ WFISFG  L
Sbjct: 66  QSPLVLAANRTKRPDILHGFRVYEGGWDIANQNYWASVGFTGATGFILSIFWFISFGCAL 125

Query: 126 VAHHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYV 185
           + H CCGW++N+KG+ES +S  ICL LL+VFT AA IGCILL +GQ+ F+ E +HTLKYV
Sbjct: 126 LVHRCCGWKLNLKGEESKTSHWICLALLVVFTSAATIGCILLCIGQNNFYNEGLHTLKYV 185

Query: 186 VNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSEN 245
           VNQSDYTV TLRNVTEYLSLAKTINVAQVFLPS VM++ID+LN  L+TAA+T+ADKTS N
Sbjct: 186 VNQSDYTVDTLRNVTEYLSLAKTINVAQVFLPSDVMNEIDELNVGLNTAADTVADKTSLN 245

Query: 246 SAKIRKVFNAVRSALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCG 305
           S KIRKVF  +RSALITVAA+MLLL++IGLFLS   ++HAI+I I+SGWLLV ITF+LCG
Sbjct: 246 SRKIRKVFTVMRSALITVAAIMLLLALIGLFLSFFGYQHAIYILIISGWLLVTITFVLCG 305

Query: 306 VFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVN 365
           +FVIL+NA+SDTCMAM+EWV++ HAETALSNILPCVD +TTN++LIQSK+++ DIVNVV+
Sbjct: 306 LFVILDNAVSDTCMAMEEWVENTHAETALSNILPCVDHKTTNQTLIQSKKIVNDIVNVVD 365

Query: 366 QFVYNIANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKV 420
           QFVYN ANANPS D   Y NQ+GP MP LCYPY+SQL++ +CG  +V+I NAS V
Sbjct: 366 QFVYNFANANPSPDSPNYRNQSGPPMPALCYPYNSQLEESRCGDNDVTIDNASTV 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110740574|dbj|BAE98392.1| hypothetical protein [Arabidopsis thaliana]

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 273/420 (65%), Positives = 334/420 (79%), Gaps = 13/420 (3%)

Query: 11  SFFVL-VLVLVSLRSIS-ALSQDGS---GRDALKLILGEHNLGPLKNGINEDAVAPGPE- 64
           SFF+L V+V VSL   S   S D S    +D L+LILG  N G  K GI   ++APGPE 
Sbjct: 2   SFFILSVVVFVSLAFFSLPHSVDSSVSASQDPLRLILGSPNFGTWKGGI---SLAPGPES 58

Query: 65  ---MLEPLLLASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISF 121
              + + LLLA++RTKRPDIL  F+ Y GGW+ITN HYWASVGFTGA  FILAVIW +SF
Sbjct: 59  DDVVSDYLLLAAHRTKRPDILRAFKPYHGGWNITNNHYWASVGFTGAPGFILAVIWLLSF 118

Query: 122 GLVLVAHHCCGWRINIKGKESA-SSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMH 180
           G +LV +HC  WRI  K K S+  ++RIC ILLIVFTC AA+GCILLSVGQD+FH EAMH
Sbjct: 119 GSLLVVYHCFKWRICDKAKGSSFDTRRICFILLIVFTCVAAVGCILLSVGQDKFHTEAMH 178

Query: 181 TLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLAD 240
           TLKYVVNQSDYTV+ L+NVT+YLSLAKTINV Q+ +PS VM +IDKLN +L+TAA TL +
Sbjct: 179 TLKYVVNQSDYTVEILQNVTQYLSLAKTINVTQIVIPSDVMGEIDKLNVNLNTAAVTLGE 238

Query: 241 KTSENSAKIRKVFNAVRSALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAIT 300
            T++N+AKI++VF AVRSALITVA +ML+LS +GL LS+LRH+H +HIF++SGW+LVA+T
Sbjct: 239 TTTDNAAKIKRVFYAVRSALITVATVMLILSFVGLLLSVLRHQHVVHIFVVSGWILVAVT 298

Query: 301 FILCGVFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDI 360
           F+LCGVF+ILNNAISDTC+AM EWVD+PHAETALS+ILPCVDQ+TTN++L QSK VI  I
Sbjct: 299 FVLCGVFLILNNAISDTCVAMKEWVDNPHAETALSSILPCVDQQTTNQTLSQSKVVINSI 358

Query: 361 VNVVNQFVYNIANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKV 420
           V VVN FVY +AN NP+     YYNQ+GP MPPLC P+D+ ++DRQC  +E+SI NAS V
Sbjct: 359 VTVVNTFVYAVANTNPAPGQDRYYNQSGPPMPPLCIPFDANMEDRQCSPWELSIENASSV 418

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145337400|ref|NP_177267.2| uncharacterized protein [Arabidopsis thaliana] gi|332197041|gb|AEE35162.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 273/420 (65%), Positives = 334/420 (79%), Gaps = 13/420 (3%)

Query: 11  SFFVL-VLVLVSLRSIS-ALSQDGS---GRDALKLILGEHNLGPLKNGINEDAVAPGPE- 64
           SFF+L V+V VSL   S   S D S    +D L+LILG  N G  K GI   ++APGPE 
Sbjct: 2   SFFILSVVVFVSLAFFSLPHSVDSSVSASQDPLRLILGSPNFGTWKGGI---SLAPGPES 58

Query: 65  ---MLEPLLLASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISF 121
              + + LLLA++RTKRPDIL  F+ Y GGW+ITN HYWASVGFTGA  FILAVIW +SF
Sbjct: 59  DDVVSDYLLLAAHRTKRPDILRAFKPYHGGWNITNNHYWASVGFTGAPGFILAVIWLLSF 118

Query: 122 GLVLVAHHCCGWRINIKGKESA-SSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMH 180
           G +LV +HC  WRI  K K S+  ++RIC ILLIVFTC AA+GCILLSVGQD+FH EAMH
Sbjct: 119 GSLLVVYHCFKWRICDKAKGSSFDTRRICFILLIVFTCVAAVGCILLSVGQDKFHTEAMH 178

Query: 181 TLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLAD 240
           TLKYVVNQSDYTV+ L+NVT+YLSLAKTINV Q+ +PS VM +IDKLN +L+TAA TL +
Sbjct: 179 TLKYVVNQSDYTVEILQNVTQYLSLAKTINVTQIVIPSDVMGEIDKLNVNLNTAAVTLGE 238

Query: 241 KTSENSAKIRKVFNAVRSALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAIT 300
            T++N+AKI++VF AVRSALITVA +ML+LS +GL LS+LRH+H +HIF++SGW+LVA+T
Sbjct: 239 TTTDNAAKIKRVFYAVRSALITVATVMLILSFVGLLLSVLRHQHVVHIFVVSGWILVAVT 298

Query: 301 FILCGVFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDI 360
           F+LCGVF+ILNNAISDTC+AM EWVD+PHAETALS+ILPCVDQ+TTN++L QSK VI  I
Sbjct: 299 FVLCGVFLILNNAISDTCVAMKEWVDNPHAETALSSILPCVDQQTTNQTLSQSKVVINSI 358

Query: 361 VNVVNQFVYNIANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKV 420
           V VVN FVY +AN NP+     YYNQ+GP MPPLC P+D+ ++DRQC  +E+SI NAS V
Sbjct: 359 VTVVNTFVYAVANTNPAPGQDRYYNQSGPPMPPLCIPFDANMEDRQCSPWELSIENASSV 418

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536222|ref|XP_003536638.1| PREDICTED: uncharacterized protein LOC100791428 [Glycine max]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 275/422 (65%), Positives = 332/422 (78%), Gaps = 2/422 (0%)

Query: 1   MKMAFLTGKASFFVLVLVLVSLRSISALSQDGSGRDALKLILGEH--NLGPLKNGINEDA 58
           MK +   G     +L  V + L S+SA S  GS R  +K I+GE   NLG  K+ + + A
Sbjct: 1   MKASSFNGFWILLLLFPVSLFLSSVSAFSPTGSIRHPVKFIIGEEEENLGSWKSELTQVA 60

Query: 59  VAPGPEMLEPLLLASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWF 118
            APGP+  + L+LA+NRT RPDIL  F+RY+GGWDI ++HYWASVGFTGA+ FILAV+WF
Sbjct: 61  PAPGPKGEDVLILAANRTNRPDILRGFQRYRGGWDIADQHYWASVGFTGAAGFILAVLWF 120

Query: 119 ISFGLVLVAHHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEA 178
           ISFGL L+ H CCGW INIK K S  SQRICLILLI FT AAA GCILLSV QD+FHG+A
Sbjct: 121 ISFGLALMIHLCCGWGINIKDKGSNHSQRICLILLISFTFAAATGCILLSVAQDKFHGQA 180

Query: 179 MHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTL 238
           + TL Y VNQSDYTV+TLRNVTEYLSLAKTINV Q+ LPS VMD IDKLN DL++AA+TL
Sbjct: 181 LDTLHYFVNQSDYTVQTLRNVTEYLSLAKTINVTQILLPSDVMDGIDKLNVDLNSAADTL 240

Query: 239 ADKTSENSAKIRKVFNAVRSALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVA 298
           ++KT+ENS KIR+VFN VR AL  VAA+MLLL+++GL LS+L ++HAI IF+++GWLLVA
Sbjct: 241 SEKTNENSVKIRRVFNDVRLALYVVAAVMLLLALVGLVLSVLGYRHAILIFVITGWLLVA 300

Query: 299 ITFILCGVFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVIT 358
            TFILCGVF+ILNNAISDTCMAM EWV +P  E+ALSN+LPCVDQRTTNK+L QSK+VI 
Sbjct: 301 TTFILCGVFIILNNAISDTCMAMGEWVANPRTESALSNVLPCVDQRTTNKTLFQSKQVIN 360

Query: 359 DIVNVVNQFVYNIANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANAS 418
           +I +VVN F++  AN N +Q    YYNQ+GP MP LCYP+DSQ Q+RQC   EVS ANAS
Sbjct: 361 NIASVVNTFIFATANINETQGSPGYYNQSGPRMPSLCYPFDSQFQERQCTDQEVSSANAS 420

Query: 419 KV 420
           +V
Sbjct: 421 RV 422

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838929|ref|XP_002887346.1| hypothetical protein ARALYDRAFT_476243 [Arabidopsis lyrata subsp. lyrata] gi|297333187|gb|EFH63605.1| hypothetical protein ARALYDRAFT_476243 [Arabidopsis lyrata subsp. lyrata]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 258/397 (64%), Positives = 315/397 (79%), Gaps = 8/397 (2%)

Query: 29  SQDGSGRDALKLILGEHNLGPLKNGINEDAVAPGPE----MLEPLLLASNRTKRPDILNH 84
           S   + +D LKLILG  N G  K GI   ++APGP     + + LLLA++RTKRPDIL  
Sbjct: 25  SSVAASQDPLKLILGSPNFGSWKGGI---SLAPGPSSDDVVSDYLLLAAHRTKRPDILRA 81

Query: 85  FRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGKESA- 143
           F+ Y GGW+ITN HYWASVGFTGA  FILAVIW +SFG +LV +HC  WR+ +K K S+ 
Sbjct: 82  FKPYHGGWNITNNHYWASVGFTGAPGFILAVIWLLSFGSLLVVYHCFKWRLCVKAKGSSF 141

Query: 144 SSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYL 203
            S+R C ILLIVFTC AA+GCILLSVGQD+FH EAM TLKYVVNQSDYTV+ L+NVT+YL
Sbjct: 142 DSRRFCFILLIVFTCVAAVGCILLSVGQDKFHTEAMRTLKYVVNQSDYTVEILQNVTQYL 201

Query: 204 SLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSALITV 263
           SLAKTINV  + +P  VMD+IDKLN +L+ AA TL +KT + +AKI++V  AVRSALITV
Sbjct: 202 SLAKTINVTAISIPPNVMDEIDKLNVNLNNAAVTLGEKTPDTAAKIKRVVYAVRSALITV 261

Query: 264 AALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMAMDE 323
           A +ML+LS +GL LS+LRH+H +HIF++SGW+LVA+TF+LCGVF+ILNNAISDTC+AM E
Sbjct: 262 ATVMLILSFVGLLLSVLRHQHVVHIFVVSGWILVAVTFVLCGVFLILNNAISDTCVAMKE 321

Query: 324 WVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANANPSQDYIYY 383
           WVDHPHAETALS+ILPCVDQ+TTN++L QSK VI  IV VVN FVY +AN NPS     Y
Sbjct: 322 WVDHPHAETALSSILPCVDQQTTNQTLAQSKVVINSIVTVVNTFVYAVANTNPSPGQDRY 381

Query: 384 YNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKV 420
           YNQ+GP MPPLC P+D+ ++DRQC  +E+SI NAS V
Sbjct: 382 YNQSGPPMPPLCIPFDANMEDRQCSPWELSIENASSV 418

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
TAIR|locus:2026276	557	AT1G71110 "AT1G71110" [Arabido	0.851	0.691	0.638	1.3e-132
TAIR|locus:2046079	541	AT2G12400 "AT2G12400" [Arabido	0.774	0.646	0.415	4e-74
TAIR|locus:2059567	545	AT2G25270 [Arabidopsis thalian	0.831	0.689	0.384	2.3e-71
TAIR|locus:2198923	538	AT1G80540 "AT1G80540" [Arabido	0.789	0.663	0.332	2.2e-57
TAIR|locus:2158581	509	AT5G67550 "AT5G67550" [Arabido	0.732	0.650	0.223	7.3e-14

TAIR|locus:2026276 AT1G71110 "AT1G71110" [Arabidopsis thaliana (taxid:3702)]

 Score = 1300 (462.7 bits), Expect = 1.3e-132, P = 1.3e-132
 Identities = 251/393 (63%), Positives = 307/393 (78%)

Query:    33 SGRDALKLILGEHNLGPLKNGINEDAVAPGPE----MLEPLLLASNRTKRPDILNHFRRY 88
             + +D L+LILG  N G  K GI+   +APGPE    + + LLLA++RTKRPDIL  F+ Y
Sbjct:    29 ASQDPLRLILGSPNFGTWKGGIS---LAPGPESDDVVSDYLLLAAHRTKRPDILRAFKPY 85

Query:    89 QGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGKESA-SSQR 147
              GGW+ITN HYWASVGFTGA  FILAVIW +SFG +LV +HC  WRI  K K S+  ++R
Sbjct:    86 HGGWNITNNHYWASVGFTGAPGFILAVIWLLSFGSLLVVYHCFKWRICDKAKGSSFDTRR 145

Query:   148 ICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAK 207
             IC ILLIVFTC AA+GCILLSVGQD+FH EAMHTLKYVVNQSDYTV+ L+NVT+YLSLAK
Sbjct:   146 ICFILLIVFTCVAAVGCILLSVGQDKFHTEAMHTLKYVVNQSDYTVEILQNVTQYLSLAK 205

Query:   208 TINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSALITVAAXX 267
             TINV Q+ +PS VM +IDKLN +L+TAA TL + T++N+AKI++VF AVRSALITVA   
Sbjct:   206 TINVTQIVIPSDVMGEIDKLNVNLNTAAVTLGETTTDNAAKIKRVFYAVRSALITVATVM 265

Query:   268 XXXXXXXXXXXXXRHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMAMDEWVDH 327
                          RH+H +HIF++SGW+LVA+TF+LCGVF+ILNNAISDTC+AM EWVD+
Sbjct:   266 LILSFVGLLLSVLRHQHVVHIFVVSGWILVAVTFVLCGVFLILNNAISDTCVAMKEWVDN 325

Query:   328 PHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANANPSQDYIYYYNQT 387
             PHAETALS+ILPCVDQ+TTN++L QSK VI  IV VVN FVY +AN NP+     YYNQ+
Sbjct:   326 PHAETALSSILPCVDQQTTNQTLSQSKVVINSIVTVVNTFVYAVANTNPAPGQDRYYNQS 385

Query:   388 GPVMPPLCYPYDSQLQDRQCGSYEVSIANASKV 420
             GP MPPLC P+D+ ++DRQC  +E+SI NAS V
Sbjct:   386 GPPMPPLCIPFDANMEDRQCSPWELSIENASSV 418

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046079 AT2G12400 "AT2G12400" [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 148/356 (41%), Positives = 225/356 (63%)

Query:    69 LLLASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGL---VL 125
             L+LA+ RT+R D  ++F+ Y GGW+I+N HY  SVG+T A   I+A++WF+ FGL   ++
Sbjct:    65 LILAAKRTRRKDPADNFKLYTGGWNISNSHYLTSVGYTAAPFIIIALVWFVFFGLSLSLI 124

Query:   126 VAHHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYV 185
                +CC  R +  G  S  +  + LILLI FT AA IGC+ L  GQ +FH     TL YV
Sbjct:   125 CLCYCCCARQSY-GY-SRVAYALSLILLISFTIAAIIGCVFLYTGQGKFHASTTDTLDYV 182

Query:   186 VNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSEN 245
             V+Q++ T + LRNV++YL+ AK ++V    LP  V+  ID +   ++++A TL+ KT EN
Sbjct:   183 VSQANLTSENLRNVSDYLNAAKKVDVQSSILPQDVLSSIDNIQGKINSSATTLSVKTMEN 242

Query:   246 SAKIRKVFNAVRSALITVAAXXXXXXXXXXXXXXXRHKHAIHIFILSGWLLVAITFILCG 305
               KI+ V + +R AL+ +AA                 +  ++  ++ GW+LV +TF+LCG
Sbjct:   243 QDKIQNVLDIMRLALVIIAAVMLFLAFIGFLLSIFGLQCLVYTLVILGWILVTVTFVLCG 302

Query:   306 VFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVITDIVNVVN 365
              F++L+N + DTC+AMD+WV +P A TAL +ILPCVD  T  ++L ++K V   +VN+++
Sbjct:   303 GFLLLHNVVGDTCVAMDQWVQNPTAHTALDDILPCVDNATARETLTRTKLVTYQLVNLLD 362

Query:   366 QFVYNIANAN-PSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKV 420
               + N+ N N P Q    YYNQ+GP+MP LC P+++ L DRQC   +V + NA++V
Sbjct:   363 NAISNMTNRNFPPQFRPLYYNQSGPLMPLLCNPFNADLSDRQCQPGQVHLNNATEV 418

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2059567 AT2G25270 [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 151/393 (38%), Positives = 234/393 (59%)

Query:    38 LKLILGEHNL-GPLKNGINEDAVAPGPEMLE--PLLLASNRTKRPDILNHFRRYQGGWDI 94
             +K I+ E  L GP   G N       P+++E   + LA+ RT R D LN F +Y GGW+I
Sbjct:    44 MKFIVAEAPLLGPA--GFNN------PQVIEVASVALAAQRTYRKDPLNGFEKYTGGWNI 95

Query:    95 TNKHYWASVGFTGASAFILAVIWFISFG---LVLVAHHCCGWRINIKGKESASSQRICLI 151
             +N+HYWASV +T    F+LA +WF+ FG   LV+   H C  R N  G  S  +  + LI
Sbjct:    96 SNQHYWASVSYTAVPLFVLAAVWFLGFGICLLVICMCHICH-RTNSVGY-SKVAYVVSLI 153

Query:   152 LLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINV 211
              L++FT  A IGC+LL  GQ  ++     TL+YV++Q+D T+  LR +++YL+ AK   V
Sbjct:   154 FLLIFTVIAIIGCVLLYSGQIRYNKSTTETLEYVMSQADSTISQLRAISDYLASAKQAAV 213

Query:   212 AQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSALITVAAXXXXXX 271
              QV LP+ V  +ID++   L ++  T+ +K++ +S  IR   ++VR ALI V+       
Sbjct:   214 LQVLLPANVQTEIDQIGVKLDSSVATITEKSTNSSNHIRHFLDSVRVALIVVSIVMLVVT 273

Query:   272 XXXXXXXXXRHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMAMDEWVDHPHAE 331
                        +  ++  ++ GW+LV  TFIL G F++L+NA +DTC+AM EWV+ P + 
Sbjct:   274 FLGLVSSIFGMQVIVYTLVILGWILVTGTFILSGTFLVLHNATADTCVAMSEWVERPSSN 333

Query:   332 TALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANANPSQDYI-YYYNQTGPV 390
             TAL  ILPC D  T  ++L++S+EV   +V ++N  + N++N N S  ++  YYNQ+GP+
Sbjct:   334 TALDEILPCTDNATAQETLMRSREVTGQLVELINTVITNVSNINFSPVFVPMYYNQSGPL 393

Query:   391 MPPLCYPYDSQLQDRQCGSYEVSIANASKVLSS 423
             +P LC P++  L DR C   ++ + NA++  +S
Sbjct:   394 LPLLCNPFNHDLTDRSCSPGDLDLNNATEAWTS 426

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0031507 "heterochromatin assembly" evidence=RCA

GO:0045787 "positive regulation of cell cycle" evidence=RCA

TAIR|locus:2198923 AT1G80540 "AT1G80540" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 124/373 (33%), Positives = 201/373 (53%)

Query:    69 LLLASNRTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAH 128
             L+LA+ RT+RPD LNHF  Y  GW++TN HY ASVGF+     ++A+ WF+  GL L+  
Sbjct:    64 LVLAAERTQRPDPLNHFNIYVDGWNVTNSHYIASVGFSAVPFIVIAIAWFVLLGLFLICS 123

Query:   129 H----CCGWRINIKGKESASSQRIC----LILLIVFTCAAAIGCILLSVGQDEFHGEAMH 180
                  CCG      G+ +    R+C    L+ L++FT AA IG  +L  GQ+EF+G    
Sbjct:   124 CLCCCCCGC-----GRRNYGYSRVCYTLSLVFLLLFTIAAVIGSAMLYTGQNEFYGSVER 178

Query:   181 TLKYVVNQSDYTVKTLRNVTEYLSLAKTINV-AQVFLPSAVMDDIDKLNRDLSTAANTLA 239
             T  Y+V Q+   +  L ++ + +  AK I +      P     +ID  N  +  +  T  
Sbjct:   179 TFMYIVKQATGVLTKLTSLWDSIQSAKDIQLDGHNLFPPEFRGNIDHFNNMIKMSNITYP 238

Query:   240 DKTSENSAK-IRKVFNAVRSALITVAAXXXXXXXXXXXXXXXRHKHAIHIFILSGWLLVA 298
             D+ +  + + +    N VR  L  +A                  +  +++ ++ GW+LV 
Sbjct:   239 DRVANQTIRYLTGALNPVRYVLNVIAGVMLAVAFLGLLFSFCGLRVLVYLLVILGWILVT 298

Query:   299 ITFILCGVFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVIT 358
              T +L  VF++ +N ++DTCMAMD+WV  P A++ALS +LPC+D +T  ++L  +K +  
Sbjct:   299 ATILLSAVFLVFHNVVADTCMAMDQWVHDPAADSALSQLLPCLDPKTIGETLDITKTMTA 358

Query:   359 DIVNVVNQFVYNIANANP-SQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANA 417
               V++ N +  N++N +    +  +Y+NQ+GP++P LC P D   + R C   EV +ANA
Sbjct:   359 TAVDMTNAYTVNVSNHDQFPPNAPFYHNQSGPLVPLLCNPLDQNHKPRPCAPDEVLLANA 418

Query:   418 SKVLSSVLFILNA 430
             S+V    +  +NA
Sbjct:   419 SQVYKGYICQVNA 431

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2158581 AT5G67550 "AT5G67550" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 7.3e-14, P = 7.3e-14
 Identities = 82/367 (22%), Positives = 152/367 (41%)

Query:    75 RTKRPDILNHFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWR 134
             R KR D LN FR Y GG+++ NKHYWA+  FTG   + +A       G++++   C G  
Sbjct:    36 RFKRRDPLNSFRYYDGGFNVRNKHYWAATAFTGIHGYAVA-------GVLIIVGICLGLY 88

Query:   135 INIKGKES--ASSQR----------ICLILLIVFTCAAAIGCILLSVGQDEFHGEAM-HT 181
             +    K    +S++R            L+LL +F      G ++ +  + +   E M  T
Sbjct:    89 VAFSDKRRRVSSTRRRYLDRYYLPLFLLLLLFMFLSVVTTGIVIAANQRSKNRTEEMKET 148

Query:   182 LKYV---VNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTL 238
             +      VNQ+  TV       +YL L    N   +   +     + K +R + +  +  
Sbjct:   149 IDKAGEDVNQNIRTVIVSLTKIQYLLLPYDQNTTHLL--NVTTHRLGKGSRLIQSFLHHK 206

Query:   239 ADKTSENSAKIRKVFNAVRSALITVAAXXXXXXXXXXXXXXXRHKHAIHIFILSGWLLVA 298
               ++ + + KI  V     S L+  +                 H   I +  L  W++  
Sbjct:   207 G-RSIDLAIKISYV-----SHLMITSTNLFLLLLAFLPLLLHWHPGFIMVIFLC-WIITT 259

Query:   299 ITFILCGVFVILNNAISDTCMAMDEWVDHPHAETALSNILPCVDQRTTNKSLIQSKEVIT 358
             + ++L G    ++    D C A + +V +P   T L+N+ PC+D   ++K+LI+   +I 
Sbjct:   260 LCWVLTGFDFFIHTFAEDLCSAFNGFVQNPRNST-LTNLFPCMDPLHSDKTLIEISLMIH 318

Query:   359 DIVNVVNQFVYNIANANPSQDY---IYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIA 415
             + +  +N  V     +N   D    + +  ++G +  P      +    + C +  + I 
Sbjct:   319 NFITQLNSKVAESMRSNALTDRSNTVSWAPESGIICDPFVGQQINSYTPQSCSNGAIPIG 378

Query:   416 NASKVLS 422
                 +LS
Sbjct:   379 EFPNILS 385


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      452       405    0.0010  117 3  11 22  0.49    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  260 KB (2139 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  32.59u 0.15s 32.74t   Elapsed:  00:00:01
  Total cpu time:  32.59u 0.15s 32.74t   Elapsed:  00:00:01
  Start:  Mon May 20 15:15:44 2013   End:  Mon May 20 15:15:45 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	452
cd07912	418	Tweety_N N-terminal domain of the protein encoded	100.0
PF04906	406	Tweety: Tweety; InterPro: IPR006990 None of the me	99.88
KOG4433	526	consensus Tweety transmembrane/cell surface protei	99.8
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	99.22
KOG4331	865	consensus Polytopic membrane protein Prominin [Gen	98.3
PF04906	406	Tweety: Tweety; InterPro: IPR006990 None of the me	97.71
KOG4433	526	consensus Tweety transmembrane/cell surface protei	97.28
cd07912	418	Tweety_N N-terminal domain of the protein encoded	96.97
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	94.51
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	88.0
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	87.81
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	81.78

>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels

Probab=100.00  E-value=8.6e-34  Score=294.84  Aligned_cols=277  Identities=18%  Similarity=0.221  Sum_probs=184.2

Q ss_pred             cccccCCcccCCCcceeeehhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccCCCC-CcchhHHHHHHHHHHHHHHHHH
Q 012972           84 HFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGK-ESASSQRICLILLIVFTCAAAI  162 (452)
Q Consensus        84 ~fk~Y~GG~nIsnkHYwaSV~fTgipgf~IA~lWfi~fGl~l~~~~cC~crc~~k~~-g~~~~~r~slilLllfTi~aii  162 (452)
                      .|++.++.||++||||||||+|||+    ||++||+++|+++++.+||+|||+++.+ +++++.++..+.|+++++++.+
T Consensus        20 ~f~~v~~~F~p~~~~Y~~Sv~~~a~----iaavwlil~ll~ll~~~~~~CCcr~~~~~~k~~s~~c~~~sLiiltL~~~a   95 (418)
T cd07912          20 TFHRVNSTFNPEDEIYQQSLLILAS----IPAACLILSLLFLLVYLITRCCDRKPTEERPRHSICCLKWSLVIATLLCCA   95 (418)
T ss_pred             eEEecCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence            5788899999999999999999995    9999999888888875555554544311 1122222444444444444555


Q ss_pred             HHhhhhcccccchhhhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhcccc-------cc-cc---hhhHHhHHHHHHHH
Q 012972          163 GCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQ-------VF-LP---SAVMDDIDKLNRDL  231 (452)
Q Consensus       163 Gcivl~~Gn~kfhs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v~~-------~~-lP---~dvq~~Id~l~~~L  231 (452)
                      |.+++|+||++||++++++.+++ +++++++++++|++++++++-+..+++       ++ -|   .|-.+.+..++++.
T Consensus        96 aIi~~f~GN~~~h~gV~~t~~si-~~an~tv~~l~nqv~~l~~al~~t~~~~L~~L~~il~~~~~~~~~~~~~~~~q~~~  174 (418)
T cd07912          96 AIGVGLYGNDETHDGVVQLTYSL-RNANHTVAGIDNQTSDTEASLNVTVEPQLTNLEDIFDARVNKTDYLQIVQGLQQMA  174 (418)
T ss_pred             HHHHHhhccHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHhCCCcchhhHHHHHHHHHHHH
Confidence            55558999999999999999998 899999999999999999865444431       11 12   12222333333444


Q ss_pred             HHHHHHHhHH-----hHHhHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 012972          232 STAANTLADK-----TSENSAKIRKVFN---AVRS-ALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFI  302 (452)
Q Consensus       232 nsaA~~i~~k-----~~~N~~~I~~~l~---~v~~-~liivaaVmLlLa~lGlv~~i~g~r~l~~~~~i~gwilv~~twi  302 (452)
                      .+.++++.+-     ...|..+|.+-.+   ..|+ +.+.+..+.+++++++++--..+.|+.+++++++|.+.++++|+
T Consensus       175 ~n~~~~~~~~~~~~~~~~~l~~i~~~~~~~E~~Rw~~~l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~l~l~~~W~  254 (418)
T cd07912         175 TNAAQQLTGIPFWSLVGVSLTKLADQVSLYESYRWLAYLGLLSLLLVICLVLLVGLARHSRCLLIVFSVCGLFALIISWL  254 (418)
T ss_pred             HHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            4444333221     2233333333333   3343 23444445556666654333448899999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhHhhHhhhcCCCCCCc----cccccccCcccchhhHHHH---HHHHHHHHHHHHhH
Q 012972          303 LCGVFVILNNAISDTCMAMDEWVDHPHAETA----LSNILPCVDQRTTNKSLIQ---SKEVITDIVNVVNQ  366 (452)
Q Consensus       303 l~Gv~l~l~~~~~DtC~Am~e~~~~P~~~t~----L~diLPCvd~~~a~~~L~~---ske~i~~lV~~vN~  366 (452)
                      +.|++++.+++++|.|.++|+|+.+....+-    +.-.+.|. +..+|+.-++   +++...++-+++..
T Consensus       255 ~~~~~l~~~v~~sDfC~~pd~yi~~~~~~~~~~di~~yy~~C~-~~~~npF~~~l~~~~~~l~~~~~~~~~  324 (418)
T cd07912         255 SLGLYLASAVALSDFCVDPDDYVRNQTPSGLSSDILQYYLTCE-PSTTNPFQQRLTESQRALTNMQSQVQG  324 (418)
T ss_pred             HHHHHHHHHHhhhhhhcCHHHHHHhccccccchHHHHHHhcCC-CCCCCcchHhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999875332    33456895 4446665444   44444444444433

The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.

>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised

Probab=99.88  E-value=1.2e-21  Score=204.19  Aligned_cols=263  Identities=15%  Similarity=0.193  Sum_probs=160.1

Q ss_pred             ccccCCcccCCCcceeeehhhhhhhHHHHHHHHHHHHHHHHHH---HHHhcccccCCCCCcchhHHHHHHHHHHHHHHHH
Q 012972           85 FRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVA---HHCCGWRINIKGKESASSQRICLILLIVFTCAAA  161 (452)
Q Consensus        85 fk~Y~GG~nIsnkHYwaSV~fTgipgf~IA~lWfi~fGl~l~~---~~cC~crc~~k~~g~~~~~r~slilLllfTi~ai  161 (452)
                      |+.-++.|+++|+.|-+|++|-|    .+|++|++. -+++++   ++.||||++++.+.++.+ ++..+.+++.++++.
T Consensus         1 ~~~~~~~F~p~~~~Y~qsL~~la----~v~~~~l~l-~Ll~ll~yl~~~CC~r~~~~~~~~~~~-~c~~~~~~ia~lvc~   74 (406)
T PF04906_consen    1 FQPVSSTFNPQDEEYQQSLLILA----SVAAACLAL-SLLFLLIYLICRCCCRRPREEKSSRRC-CCLTWSLVIATLVCC   74 (406)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHhhCCCCCccccccCC-cchHHHHHHHHHHHH
Confidence            67888999999999999999988    567888873 333333   333333222211111111 133333455555556


Q ss_pred             HHHhhhhcccccchhhhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhcc-------ccc-ccchhhHHhHHHHHHHHHH
Q 012972          162 IGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINV-------AQV-FLPSAVMDDIDKLNRDLST  233 (452)
Q Consensus       162 iGcivl~~Gn~kfhs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v-------~~~-~lP~dvq~~Id~l~~~Lns  233 (452)
                      +|.++.++||++.|+++.+... -.+.++.+..++++.....+..-...+       +.. .-|.+..+.+.++++++.+
T Consensus        75 aaigvG~yGN~e~~~gv~~~~~-s~~~~n~t~~~i~~~v~~~~~~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~~~~  153 (406)
T PF04906_consen   75 AAIGVGFYGNSETNDGVYQLIY-SLRNANHTLSGIDNLVSDTTEALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQAEN  153 (406)
T ss_pred             HHHHcccccchhhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            6667889999999999877554 445555666666555544432211111       111 1344444555555443333


Q ss_pred             HHHH---HhH--HhHHhHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 012972          234 AANT---LAD--KTSENSAKIRKVFN---AVRS-ALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILC  304 (452)
Q Consensus       234 aA~~---i~~--k~~~N~~~I~~~l~---~v~~-~liivaaVmLlLa~lGlv~~i~g~r~l~~~~~i~gwilv~~twil~  304 (452)
                      .+++   |..  +...|...+.+-.+   ..|+ +.+.+..+++++++++++--..+.|+.++.+.++|++.++++|++.
T Consensus       154 v~~~l~~l~~~~~~~~~l~~~~~~~~~~E~yRw~~~~~lL~l~l~icl~~l~glar~Sk~~li~~~v~gll~lvisW~~~  233 (406)
T PF04906_consen  154 VVQQLDELPFWRNVSLSLEQLAEQVSFYEYYRWLAYLGLLILDLVICLLGLLGLARQSKCLLIVFSVLGLLALVISWISL  233 (406)
T ss_pred             HHHHHhcCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEeeeccHHHHHHHHHHH
Confidence            3333   321  11122222222222   2343 2445555666777666554456788999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhHhhHhhhcCCCCCCcc----ccccccCcccchhhHHHHHHH
Q 012972          305 GVFVILNNAISDTCMAMDEWVDHPHAETAL----SNILPCVDQRTTNKSLIQSKE  355 (452)
Q Consensus       305 Gv~l~l~~~~~DtC~Am~e~~~~P~~~t~L----~diLPCvd~~~a~~~L~~ske  355 (452)
                      |++++..++++|.|+++++|+.|-..+...    .-.+-|.. ..+|++-.+..+
T Consensus       234 g~~la~aV~~SDFC~~Pd~~i~~~~~~~~~~di~~YYl~C~~-~~~nPFqq~l~~  287 (406)
T PF04906_consen  234 GLELAAAVGLSDFCVDPDTYILNQTQNETSADILQYYLTCSQ-SVSNPFQQRLTS  287 (406)
T ss_pred             HHHHHhccchhhhccCHHHHHHHhcccccchhHHHHhhcCCC-CCCCchHHHHHH
Confidence            999999999999999999999887665432    45567954 455665444444

However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].

>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]

Probab=99.80  E-value=4.4e-18  Score=176.84  Aligned_cols=283  Identities=16%  Similarity=0.157  Sum_probs=177.3

Q ss_pred             cccccCCcccCCCcceeeehhhhhhhHHHHHHHHHHH--HHHHHHHHHHhcccccCCCCCc-chhHHHHHHHHHHHHHHH
Q 012972           84 HFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFIS--FGLVLVAHHCCGWRINIKGKES-ASSQRICLILLIVFTCAA  160 (452)
Q Consensus        84 ~fk~Y~GG~nIsnkHYwaSV~fTgipgf~IA~lWfi~--fGl~l~~~~cC~crc~~k~~g~-~~~~r~slilLllfTi~a  160 (452)
                      .|+.-+.-|++.++.|.+|.++-|    ++|++.+++  .+|++...+.||||.+  ..++ .+..|+..+.+++.|++.
T Consensus        24 ~~~~tns~F~pe~~~Y~QaL~lla----~l~aa~l~l~Ll~ll~yli~~cC~Rr~--~~~~~~~~~~c~s~~l~I~tl~c   97 (526)
T KOG4433|consen   24 KLHPTNSVFRPEDSEYQQALLLLA----ALAAACLGLSLLFLLFYLICRCCCRRE--TTGRKRRRVRCLSWSLIIATLMC   97 (526)
T ss_pred             eEeeccccCCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCC--ccCCCCCCcceeeehHHHHHHHH
Confidence            467778899999999999999988    455555542  2444444444433322  1122 122234445556666666


Q ss_pred             HHHHhhhhcccccchhhhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhcccccc-cchhhH---HhHHHHH----HHHH
Q 012972          161 AIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVF-LPSAVM---DDIDKLN----RDLS  232 (452)
Q Consensus       161 iiGcivl~~Gn~kfhs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v~~~~-lP~dvq---~~Id~l~----~~Ln  232 (452)
                      .+|.++.++||+++|+++.+.. |-.+.+|.++.++++.+...+++.....++.. -|..++   .++++.-    +++.
T Consensus        98 ca~igvg~ygN~e~~~G~~q~~-~Sl~~an~tv~ti~~qv~~~~~~l~~~~~~~l~~~~~n~t~~~~l~~~l~~vq~~~~  176 (526)
T KOG4433|consen   98 CAAIGVGFYGNSETSDGLLQAT-YSLRHANHTVSTIDAQVSDTAEGLNNTAEQLLETLEENLTARPELLQALRRVQGNAE  176 (526)
T ss_pred             HHHHheeeecCccccchHHHHH-HhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhHHHHHHHHHHHHHHHH
Confidence            7777888999999999987754 46677788888888777665553332222222 122222   2222222    2333


Q ss_pred             HHHHHHhHHhHH-----hHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 012972          233 TAANTLADKTSE-----NSAKIRKVFNA---VRSA-LITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFIL  303 (452)
Q Consensus       233 saA~~i~~k~~~-----N~~~I~~~l~~---v~~~-liivaaVmLlLa~lGlv~~i~g~r~l~~~~~i~gwilv~~twil  303 (452)
                      .++.+.+.-...     -..++.+..+.   .|+. ..+..++.+++++++.+--.-+.||+++.|.++|.+.++++|.+
T Consensus       177 ~a~~~l~~~~~~~~~~~sl~~l~~~~~~yE~~RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvisWl~  256 (526)
T KOG4433|consen  177 TAVGQLSGLPFWRMVAVSLEKLAEQVDFYESYRWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVISWLS  256 (526)
T ss_pred             HHHHhhhcCcccccCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH
Confidence            333332211110     12234443333   3442 44555555666666443333478999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhHhhHhhhcCCCCCC----ccccccccCcccchhhHHHHHHHHHHHHHHHHhHHHHHhhhcC
Q 012972          304 CGVFVILNNAISDTCMAMDEWVDHPHAET----ALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANAN  375 (452)
Q Consensus       304 ~Gv~l~l~~~~~DtC~Am~e~~~~P~~~t----~L~diLPCvd~~~a~~~L~~ske~i~~lV~~vN~~I~~v~n~n  375 (452)
                      .|++++..++++|.|+++|+|+.+-..+-    -+-..+-| ....+|++..+.+|. .+..+..-+.+..+....
T Consensus       257 ~gl~la~sVa~sDFC~~Pd~y~~~~~~~~l~t~~~~~yl~c-~~t~~NpF~qrL~~s-q~al~~~~~~va~l~r~~  330 (526)
T KOG4433|consen  257 LGLELASSVALSDFCVDPDDYVLNMVEEYLSTDILLYYLAC-SPTHSNPFQQRLTES-QRALNNMQSQVAGLLRMA  330 (526)
T ss_pred             HhhhHHHHhhhhhhccChHHHHHHhhhcccchhHHhhhccc-CCCCCCchhHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999997654432    13334457 477899999999998 556666666666665543

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=99.22  E-value=1.1e-10  Score=131.58  Aligned_cols=91  Identities=18%  Similarity=0.203  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHhcccccCCCCCcc--------hhHH-HHHHHHHHHHHHHHHHHhhhhcccccchhhh
Q 012972          110 AFILAVIWFISFGLVLVA--HHCCGWRINIKGKESA--------SSQR-ICLILLIVFTCAAAIGCILLSVGQDEFHGEA  178 (452)
Q Consensus       110 gf~IA~lWfi~fGl~l~~--~~cC~crc~~k~~g~~--------~~~r-~slilLllfTi~aiiGcivl~~Gn~kfhs~~  178 (452)
                      ||++-++..+.|.+++-+  +||||||||++|+|++        .|+| ++.++|+++++++++|.+++|.+|+++++++
T Consensus        92 g~~v~~~i~ll~~il~P~vg~~fCcCRCc~~CGg~~~~~~~~~~~c~R~~l~~~L~~~~~~il~g~i~aF~~n~~l~~~v  171 (806)
T PF05478_consen   92 GFLVCAVIGLLFIILMPLVGLCFCCCRCCGNCGGRMHQRDKKNDACRRGCLGILLLLLTLIILFGVICAFVANQQLSTGV  171 (806)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444434444333  6788889999999875        3655 7788899999999999999999999999999


Q ss_pred             hhhHHHHhccchHHHHHHHHHHHHHhHhh
Q 012972          179 MHTLKYVVNQSDYTVKTLRNVTEYLSLAK  207 (452)
Q Consensus       179 ~~t~d~Vv~qa~~av~tLrnVt~~L~~ak  207 (452)
                      +++.+       .+.++++|+..+++++.
T Consensus       172 ~~~~~-------~~~~~~~Dl~~~l~~~~  193 (806)
T PF05478_consen  172 DDTPN-------TVNSTLDDLRTFLNDTP  193 (806)
T ss_pred             hhHHH-------HHHHHHHHHHHHHHhhH
Confidence            98887       56667777777777654

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]

Probab=98.30  E-value=3.4e-06  Score=93.77  Aligned_cols=107  Identities=15%  Similarity=0.142  Sum_probs=65.8

Q ss_pred             cccCCCcceeeehhhhhhhHHHHHHHHHHHH--HHHHHHHHHhcccccCCCCCcc--------hhHH-HHHHHHHHHHHH
Q 012972           91 GWDITNKHYWASVGFTGASAFILAVIWFISF--GLVLVAHHCCGWRINIKGKESA--------SSQR-ICLILLIVFTCA  159 (452)
Q Consensus        91 G~nIsnkHYwaSV~fTgipgf~IA~lWfi~f--Gl~l~~~~cC~crc~~k~~g~~--------~~~r-~slilLllfTi~  159 (452)
                      |=+.. |.||.=|.|-+  |+++-.+-++.+  =+.+...|+||||||++|+++.        .|+| +.-+.|++.++.
T Consensus        89 ~~~~e-k~~~~lv~~~~--g~lv~sV~~v~~iil~p~~~~~yccc~C~~rc~~r~~~~~~~~~a~kR~~~~l~Llvl~i~  165 (865)
T KOG4331|consen   89 GCRYE-KGDILLVIYEA--GMLVCSVILVLYIILKPSEGLCYCCCRCCRRCGGRIKSALKQDDACKRPCCELELLVLAIE  165 (865)
T ss_pred             CCccc-ccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHhheeeeHhhhcCCCCchhccCcHhhhhHHHHHHHHHHHH
Confidence            33444 55677777633  222222221111  1112225666777777777653        3555 788889999999


Q ss_pred             HHHHHhhhhcccccchhhhhhhHHHHhccchHHHHHHHHHH
Q 012972          160 AAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVT  200 (452)
Q Consensus       160 aiiGcivl~~Gn~kfhs~~~~t~d~Vv~qa~~av~tLrnVt  200 (452)
                      .++|.+.+|..|+..|.+.+++.+-.=+-++++-+-+|++.
T Consensus       166 ~ligv~~~fvtnk~v~~~i~~s~~~m~~~~~dl~t~lrdv~  206 (865)
T KOG4331|consen  166 LLIGVFRAFVTNKPVMLRIKNSLEDMRRLATDLRTYLRDVP  206 (865)
T ss_pred             HHHHHHHHHHHhhHHHHhhhccHHHHHHHHHHHHHHHhccH
Confidence            99999999999999999999888833333333333344333

>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised

Probab=97.71  E-value=0.0019  Score=68.25  Aligned_cols=172  Identities=13%  Similarity=0.131  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhcccccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh----hcccccchhhhhhhHH---HHhccchHHHH
Q 012972          122 GLVLVAHHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILL----SVGQDEFHGEAMHTLK---YVVNQSDYTVK  194 (452)
Q Consensus       122 Gl~l~~~~cC~crc~~k~~g~~~~~r~slilLllfTi~aiiGcivl----~~Gn~kfhs~~~~t~d---~Vv~qa~~av~  194 (452)
                      -.++..|||++++..+..++..-- .+.++...++++++++.+...    -.|=.++..+..++-+   -|-++.+++.+
T Consensus        39 ~yl~~~CC~r~~~~~~~~~~~~c~-~~~~~ia~lvc~aaigvG~yGN~e~~~gv~~~~~s~~~~n~t~~~i~~~v~~~~~  117 (406)
T PF04906_consen   39 IYLICRCCCRRPREEKSSRRCCCL-TWSLVIATLVCCAAIGVGFYGNSETNDGVYQLIYSLRNANHTLSGIDNLVSDTTE  117 (406)
T ss_pred             HHHHHHhhCCCCCccccccCCcch-HHHHHHHHHHHHHHHHcccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455778889888775544332211 122445555567777766554    3444444444443333   23344444444


Q ss_pred             HHH-HHHH---HHhHhhhhcccccccchhhHHhHHHHHHHHHHH------HHHHhHHhHHhHHHHHHHHHHHHHHHHHHH
Q 012972          195 TLR-NVTE---YLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTA------ANTLADKTSENSAKIRKVFNAVRSALITVA  264 (452)
Q Consensus       195 tLr-nVt~---~L~~ak~~~v~~~~lP~dvq~~Id~l~~~Lnsa------A~~i~~k~~~N~~~I~~~l~~v~~~liiva  264 (452)
                      ++. .+..   .|++.-....+...--..+|++.+.+..++.+-      ..++ +...+..+.++...-...+.++++.
T Consensus       118 ~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~l-~~~~~~~~~~E~yRw~~~~~lL~l~  196 (406)
T PF04906_consen  118 ALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQAENVVQQLDELPFWRNVSLSL-EQLAEQVSFYEYYRWLAYLGLLILD  196 (406)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCcccccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443 2222   233311111111111123455555554333321      1122 2233334456666666777777788


Q ss_pred             HHHHHHHHHHHHH---------HhhcchhHHHHHHHHHHHHHHHH
Q 012972          265 ALMLLLSIIGLFL---------SILRHKHAIHIFILSGWLLVAIT  300 (452)
Q Consensus       265 aVmLlLa~lGlv~---------~i~g~r~l~~~~~i~gwilv~~t  300 (452)
                      .+.+++.++|+.-         +++|     .+.+++.|++..+-
T Consensus       197 l~icl~~l~glar~Sk~~li~~~v~g-----ll~lvisW~~~g~~  236 (406)
T PF04906_consen  197 LVICLLGLLGLARQSKCLLIVFSVLG-----LLALVISWISLGLE  236 (406)
T ss_pred             HHHHHHHHHHHHhcCcceEEEeeecc-----HHHHHHHHHHHHHH
Confidence            8888888888744         3334     23444678776553

However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].

>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]

Probab=97.28  E-value=0.015  Score=62.21  Aligned_cols=189  Identities=18%  Similarity=0.152  Sum_probs=103.7

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh----hcccccchh--
Q 012972          103 VGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILL----SVGQDEFHG--  176 (452)
Q Consensus       103 V~fTgipgf~IA~lWfi~fGl~l~~~~cC~crc~~k~~g~~~~~r~slilLllfTi~aiiGcivl----~~Gn~kfhs--  176 (452)
                      ++--|+.+.++-.+-++  --.++.|||=..--.+++. +..|..+++++..+.++++|.-+...    -.|=.+...  
T Consensus        46 la~l~aa~l~l~Ll~ll--~yli~~cC~Rr~~~~~~~~-~~~c~s~~l~I~tl~cca~igvg~ygN~e~~~G~~q~~~Sl  122 (526)
T KOG4433|consen   46 LAALAAACLGLSLLFLL--FYLICRCCCRRETTGRKRR-RVRCLSWSLIIATLMCCAAIGVGFYGNSETSDGLLQATYSL  122 (526)
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHcCCCccCCCCC-CcceeeehHHHHHHHHHHHHheeeecCccccchHHHHHHhh
Confidence            33444444455544444  3455668887763333322 34577777777788888888765554    111111111  


Q ss_pred             -hhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhcccccccc----hhhHHhHHHHHHHHHHHHH-----HHhHHhHHhH
Q 012972          177 -EAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLP----SAVMDDIDKLNRDLSTAAN-----TLADKTSENS  246 (452)
Q Consensus       177 -~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v~~~~lP----~dvq~~Id~l~~~LnsaA~-----~i~~k~~~N~  246 (452)
                       .+++++..+-+|..++.+.+.|..+.+.+.+..+.....++    ..+|++++.+..++..-..     .=-+|..++.
T Consensus       123 ~~an~tv~ti~~qv~~~~~~l~~~~~~~l~~~~~n~t~~~~l~~~l~~vq~~~~~a~~~l~~~~~~~~~~~sl~~l~~~~  202 (526)
T KOG4433|consen  123 RHANHTVSTIDAQVSDTAEGLNNTAEQLLETLEENLTARPELLQALRRVQGNAETAVGQLSGLPFWRMVAVSLEKLAEQV  202 (526)
T ss_pred             hhhcchhhHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCcccccCcccHHHHHHhh
Confidence             22345555666777777777776665555444332221111    2466777666544332110     1123444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhcchhHHHHHHHHHHHHHHH
Q 012972          247 AKIRKVFNAVRSALITVAALMLLLSIIGL---------FLSILRHKHAIHIFILSGWLLVAI  299 (452)
Q Consensus       247 ~~I~~~l~~v~~~liivaaVmLlLa~lGl---------v~~i~g~r~l~~~~~i~gwilv~~  299 (452)
                      .-++-..=.-.++++.+..|.+++.++|+         +|+++|+-     .+++.|.+..+
T Consensus       203 ~~yE~~RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll-----~lvisWl~~gl  259 (526)
T KOG4433|consen  203 DFYESYRWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLL-----ALVISWLSLGL  259 (526)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH-----HHHHHHHHHhh
Confidence            55555555567777888888888888886         77888853     23455666544

>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels

Probab=96.97  E-value=0.08  Score=56.47  Aligned_cols=191  Identities=17%  Similarity=0.241  Sum_probs=105.0

Q ss_pred             ceeeehhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccc-CCCCCcchhHHHHHHHHHHHHHHHHHHHhhh----hcccc
Q 012972           98 HYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRIN-IKGKESASSQRICLILLIVFTCAAAIGCILL----SVGQD  172 (452)
Q Consensus        98 HYwaSV~fTgipgf~IA~lWfi~fGl~l~~~~cC~crc~-~k~~g~~~~~r~slilLllfTi~aiiGcivl----~~Gn~  172 (452)
                      -|.++  ..|++ +++-++    +.++.++++|||||.. .+.+.+..|+.++++++.++++++++|....    ..|-.
T Consensus        40 ~~~a~--iaavw-lil~ll----~ll~~~~~~CCcr~~~~~~k~~s~~c~~~sLiiltL~~~aaIi~~f~GN~~~h~gV~  112 (418)
T cd07912          40 LILAS--IPAAC-LILSLL----FLLVYLITRCCDRKPTEERPRHSICCLKWSLVIATLLCCAAIGVGLYGNDETHDGVV  112 (418)
T ss_pred             HHHHH--HHHHH-HHHHHH----HHHHHHHHhccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhhccHHHhhhHH
Confidence            35555  45554 444432    4556667888888861 1233445599999999999999999998886    22223


Q ss_pred             cchhhh---hhhHHHHhccchHHHHHHHHHH-HHHhHhhhh-c-----ccccccchhhHHhHHHHHHHHHHHH----HHH
Q 012972          173 EFHGEA---MHTLKYVVNQSDYTVKTLRNVT-EYLSLAKTI-N-----VAQVFLPSAVMDDIDKLNRDLSTAA----NTL  238 (452)
Q Consensus       173 kfhs~~---~~t~d~Vv~qa~~av~tLrnVt-~~L~~ak~~-~-----v~~~~lP~dvq~~Id~l~~~LnsaA----~~i  238 (452)
                      ++.+.+   ..++..+-+|.+...++++.-. +.|+..+.+ +     -+....-.+.|++.+++.+++....    .++
T Consensus       113 ~t~~si~~an~tv~~l~nqv~~l~~al~~t~~~~L~~L~~il~~~~~~~~~~~~~~~~q~~~~n~~~~~~~~~~~~~~~~  192 (418)
T cd07912         113 QLTYSLRNANHTVAGIDNQTSDTEASLNVTVEPQLTNLEDIFDARVNKTDYLQIVQGLQQMATNAAQQLTGIPFWSLVGV  192 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHhccccccccCC
Confidence            333333   3444434445555554442211 122221110 0     0001111245555555554444330    011


Q ss_pred             -hHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhcchhHHHHHHHHHHHHHHHH
Q 012972          239 -ADKTSENSAKIRKVFNAVRSALITVAALMLLLSIIGL---------FLSILRHKHAIHIFILSGWLLVAIT  300 (452)
Q Consensus       239 -~~k~~~N~~~I~~~l~~v~~~liivaaVmLlLa~lGl---------v~~i~g~r~l~~~~~i~gwilv~~t  300 (452)
                       -++..++.++++...-...+.++++..+.++++++|+         +++++|+     +.+++.|++..+-
T Consensus       193 ~l~~i~~~~~~~E~~Rw~~~l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~-----l~l~~~W~~~~~~  259 (418)
T cd07912         193 SLTKLADQVSLYESYRWLAYLGLLSLLLVICLVLLVGLARHSRCLLIVFSVCGL-----FALIISWLSLGLY  259 (418)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence             1233445567888888888888888998888888886         3444543     3345667776554

The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=94.51  E-value=1.1  Score=51.63  Aligned_cols=65  Identities=14%  Similarity=0.323  Sum_probs=36.4

Q ss_pred             hhHHhHHHHHHHHHHHHHHHhHHhHHhHHH-HHHHHH-------H------HHH-HHHHHHHHHH---HHHHHHHHHHhh
Q 012972          219 AVMDDIDKLNRDLSTAANTLADKTSENSAK-IRKVFN-------A------VRS-ALITVAALML---LLSIIGLFLSIL  280 (452)
Q Consensus       219 dvq~~Id~l~~~LnsaA~~i~~k~~~N~~~-I~~~l~-------~------v~~-~liivaaVmL---lLa~lGlv~~i~  280 (452)
                      +++++++++.+++.+.++++...+.++... +.+..+       .      -|+ +.++++.+++   ++-++||++|.+
T Consensus       361 ~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR~~~~lil~~~llLIv~~~~lGLl~G~~  440 (806)
T PF05478_consen  361 PIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSSRSFEDEYEKYDSYRWIVGLILCCVLLLIVLCLLLGLLCGCC  440 (806)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            667777777777777777776655443322 111111       1      122 3344444333   344569999999


Q ss_pred             cch
Q 012972          281 RHK  283 (452)
Q Consensus       281 g~r  283 (452)
                      |++
T Consensus       441 G~~  443 (806)
T PF05478_consen  441 GYR  443 (806)
T ss_pred             cCC
Confidence            954

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=88.00  E-value=5.7  Score=32.86  Aligned_cols=22  Identities=18%  Similarity=0.465  Sum_probs=12.2

Q ss_pred             HhHHHHH---HHHHHHHHHHhHHhH
Q 012972          222 DDIDKLN---RDLSTAANTLADKTS  243 (452)
Q Consensus       222 ~~Id~l~---~~LnsaA~~i~~k~~  243 (452)
                      +.+++++   ++|...|..+.+++.
T Consensus        31 e~L~~L~~kt~~L~~~a~~F~k~a~   55 (89)
T PF00957_consen   31 EKLEELEDKTEELSDNAKQFKKNAK   55 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3444443   566666666655554

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=87.81  E-value=14  Score=36.65  Aligned_cols=19  Identities=21%  Similarity=0.329  Sum_probs=10.5

Q ss_pred             ccchHHHHHHHHHHHHHhH
Q 012972          187 NQSDYTVKTLRNVTEYLSL  205 (452)
Q Consensus       187 ~qa~~av~tLrnVt~~L~~  205 (452)
                      ++-|.-..+.++++..|+.
T Consensus        64 ~~qd~reK~~~~I~ssL~e   82 (230)
T PF03904_consen   64 EKQDIREKNLKEIKSSLEE   82 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444445566666666655

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=81.78  E-value=30  Score=31.34  Aligned_cols=62  Identities=23%  Similarity=0.231  Sum_probs=44.0

Q ss_pred             HHHHhhhhcccccchhhhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhcccccccchhhHHhHHHHHHHHH
Q 012972          161 AIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLS  232 (452)
Q Consensus       161 iiGcivl~~Gn~kfhs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v~~~~lP~dvq~~Id~l~~~Ln  232 (452)
                      .+|++.+-+--=+|..=..-|.+-.-++.+.....|.++++.|++||.          .+.+.||.+..+|.
T Consensus        17 avGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKk----------hLsqRId~vd~klD   78 (126)
T PF07889_consen   17 AVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKK----------HLSQRIDRVDDKLD   78 (126)
T ss_pred             HHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhHH
Confidence            335554445556676666677777778888899999999999999985          45566666664444

The region featured in this family is approximately 100 amino acids long.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	452
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 56/406 (13%), Positives = 115/406 (28%), Gaps = 131/406 (32%)

Query: 99  YWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGKESASSQRI---------- 148
           +W ++    +   +L ++  + + +            NIK +  +    +          
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 149 -CLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTL-----RNVTEY 202
            CL+             +LL+V Q+     A           + + K L     + VT++
Sbjct: 245 NCLL-------------VLLNV-QNAKAWNAF----------NLSCKILLTTRFKQVTDF 280

Query: 203 LSLAKTINVAQVFLPSAVM-DDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSALI 261
           LS A T +++       +  D++  L   L    +                 N  R ++I
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSL---LLKYLDCRPQDLPREVLTT----NPRRLSII 333

Query: 262 TVAALML----------------LLSIIGLFLSIL------RHKHAIHIFILSGWLLVAI 299
             A  +                 L +II   L++L      +    + +F  S      I
Sbjct: 334 --AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS----AHI 387

Query: 300 TFILCGVFVIL-NNAISDTCMA-MDEWVD------HPHAET------ALSNILPCVDQRT 345
                 +  ++  + I    M  +++          P   T       L   +   ++  
Sbjct: 388 PT---ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 346 TNKSLIQSKEVITDIVNVVNQFVYNIANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDR 405
            ++S++          N+   F  +         Y Y +         + +     L  +
Sbjct: 445 LHRSIVDH-------YNIPKTFDSDDLIPPYLDQYFYSH---------IGH----HL--K 482

Query: 406 QCGSYEVSIANASKVLSSVLFILNAFFSPFFLSFRIFQIKILQDYT 451
                E                    F   FL FR  + KI  D T
Sbjct: 483 NIEHPE----------------RMTLFRMVFLDFRFLEQKIRHDST 512

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00