Citrus Sinensis ID: 012981

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
MEREEQKSTLNSPLIQISSEEINNNHQTCSEKKKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRVKGFSFFSII
cccccccccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHEEEHHHHHHHHHHHHHHHHHHHcccccccccccccc
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccc
mereeqkstlnspliqisseeinnnhqtcSEKKKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGhlgelplsgasmaTSFATVTGFSFLVGLSSALETLCgqsygakqyhMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLqtqnivfpMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSgllpnpaletSVLSISLNtastvwmipfglsgaastrvsnelgaghpeAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFggrvkgfsFFSII
mereeqkstlnspliqisseeinnnhqtCSEKKKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRVKGFSFFSII
MEREEQKSTLNSPLIQISSEEINNNHQTCSEKKKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRVKGFSFFSII
*********************************KIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRVKGFSFFSI*
*******************************KKKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRVKGFSFFSII
***********SPLIQISSEEINNNHQTCSEKKKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRVKGFSFFSII
***************************TCSEKKKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRVKGFSFFSII
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
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MEREEQKSTLNSPLIQISSEEINNNHQTCSEKKKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRVKGFSFFSII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query452 2.2.26 [Sep-21-2011]
Q9SIA5476 MATE efflux family protei no no 0.935 0.888 0.460 1e-101
Q9SIA3476 MATE efflux family protei no no 0.896 0.850 0.488 1e-101
Q8RWF5483 MATE efflux family protei no no 0.957 0.896 0.460 1e-101
Q8GXM8476 MATE efflux family protei no no 0.911 0.865 0.451 1e-100
Q9SIA4476 MATE efflux family protei no no 0.911 0.865 0.475 1e-100
Q9SIA1477 MATE efflux family protei no no 0.957 0.907 0.458 2e-99
Q9LUH2477 MATE efflux family protei no no 0.949 0.899 0.430 1e-96
Q9LUH3469 MATE efflux family protei no no 0.926 0.893 0.447 1e-95
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.962 0.857 0.382 2e-76
Q9USK3539 Uncharacterized transport yes no 0.964 0.808 0.338 1e-67
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function desciption
 Score =  369 bits (948), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/423 (46%), Positives = 272/423 (64%)

Query: 20  EEINNNHQTCSEKKKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGAS 79
           +E+    Q       +  E+KR   L+ P+ +V++ Q+ L +ISVM  GH GEL LSG +
Sbjct: 9   DELLVPSQVTWHTNPLTVELKRVSRLAAPMATVTIAQYLLPVISVMVAGHNGELQLSGVA 68

Query: 80  MATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWA 139
           +A SF  VTGFS + GL  ALETLCGQ+YGAKQY  +G +    +   + I   ++++W 
Sbjct: 69  LANSFTNVTGFSIMCGLVGALETLCGQAYGAKQYEKIGTYAYSAIASNIPICFLISILWL 128

Query: 140 NTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITA 199
             E +L++  QD EIS+ AG YA ++IP++F  AI+  L RFL TQ +V P++ ++  T 
Sbjct: 129 YIEKILISLGQDPEISRIAGSYAFWLIPALFGQAIVIPLSRFLLTQGLVIPLLFTAVTTL 188

Query: 200 LLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNN 259
           L H+LVCW LVF  GLG  G A+A S+S+W   ++L+ YV+FSSSC KT    S++ +++
Sbjct: 189 LFHVLVCWTLVFLFGLGCNGPAMATSVSFWFYAVILSCYVRFSSSCEKTRGFVSRDFVSS 248

Query: 260 VFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLS 319
           +  F +  IPSA M+CLE W FE+++L SGLLPNP LETSVLSI L   +  ++I  G++
Sbjct: 249 IKQFFQYGIPSAAMICLEWWLFEILILCSGLLPNPKLETSVLSICLTIETLHYVISAGVA 308

Query: 320 GAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVK 379
            A STRVSN LGAG+P+ AR++V   L + + E      +L   RN+ GYA+SN  EV+ 
Sbjct: 309 AAVSTRVSNNLGAGNPQVARVSVLAGLCLWIVESAFFSILLFTCRNIIGYAFSNSKEVLD 368

Query: 380 YVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHF 439
           YVA + P+L  S  LDG   VL+G+ARG GWQ IGA+ N  SYYLVG P  I LAF    
Sbjct: 369 YVADLTPLLCLSFILDGFTAVLNGVARGSGWQHIGAWNNTVSYYLVGAPVGIYLAFSREL 428

Query: 440 GGR 442
            G+
Sbjct: 429 NGK 431
Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|Q9USK3|YJ2D_SCHPO Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.13 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
225456065493 PREDICTED: MATE efflux family protein 6 0.977 0.896 0.776 0.0
297734274 563 unnamed protein product [Vitis vinifera] 0.977 0.785 0.776 0.0
224121238483 predicted protein [Populus trichocarpa] 0.977 0.915 0.743 0.0
356527876498 PREDICTED: MATE efflux family protein DT 0.977 0.887 0.728 0.0
359491480491 PREDICTED: MATE efflux family protein DT 0.977 0.900 0.762 0.0
356531168489 PREDICTED: MATE efflux family protein DT 0.971 0.897 0.734 0.0
297734273 1072 unnamed protein product [Vitis vinifera] 0.977 0.412 0.762 0.0
449439113496 PREDICTED: MATE efflux family protein 7- 0.977 0.891 0.702 0.0
449497528496 PREDICTED: MATE efflux family protein 7- 0.977 0.891 0.700 0.0
449497524497 PREDICTED: MATE efflux family protein 5- 0.966 0.879 0.702 0.0
>gi|225456065|ref|XP_002280423.1| PREDICTED: MATE efflux family protein 6 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/443 (77%), Positives = 395/443 (89%), Gaps = 1/443 (0%)

Query: 1   MEREEQKSTLNSPLIQISSEEINNNHQ-TCSEKKKIIEEVKRQLWLSGPLISVSLLQFCL 59
           M+R ++K TL SPLIQ   E+     +    ++ K++EEVK+QLWL+GPLISVSLLQ+CL
Sbjct: 1   MDRGDEKPTLRSPLIQSCGEDGGERSKGKVFQRDKVVEEVKKQLWLAGPLISVSLLQYCL 60

Query: 60  QMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIH 119
           Q+ISVMFVGHLGEL LSGASMATSFA+VTG S L+G++SAL+TLCGQSYGAKQYHML IH
Sbjct: 61  QLISVMFVGHLGELALSGASMATSFASVTGSSLLMGMASALDTLCGQSYGAKQYHMLSIH 120

Query: 120 MQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLV 179
           MQR M +LL++S+PLA IWA T ++L+A  QD EIS+EA LYAR+MIPS+FAY +LQCLV
Sbjct: 121 MQRAMLILLIVSIPLATIWAYTGTILMAVGQDPEISQEAELYARFMIPSLFAYGLLQCLV 180

Query: 180 RFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYV 239
           RFLQTQNIVFPM+LSSGIT LLH+LVCW LVFKSGLGS+GAALANSIS WINVLLLA+YV
Sbjct: 181 RFLQTQNIVFPMMLSSGITTLLHVLVCWFLVFKSGLGSKGAALANSISCWINVLLLALYV 240

Query: 240 KFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETS 299
           KFSSSC+KT TGFSKEAL+N+ +F+RLAIPSAVMVCLEMWSFE+MVLLSGLLPNP L+TS
Sbjct: 241 KFSSSCSKTRTGFSKEALHNIPSFLRLAIPSAVMVCLEMWSFELMVLLSGLLPNPKLQTS 300

Query: 300 VLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSV 359
           VLSI LNTA+TVWMIPFGLSGA STRVSNELGAGHP+AARLAV VVLVMA+ EG L+G +
Sbjct: 301 VLSICLNTAATVWMIPFGLSGAVSTRVSNELGAGHPQAARLAVFVVLVMAIAEGTLLGLL 360

Query: 360 LILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNL 419
           LILIRN+WGYAYSNEIEVVKYVA+M+PI+A SNFLDG+QCVLSG ARGCGWQ IGAFVNL
Sbjct: 361 LILIRNIWGYAYSNEIEVVKYVAAMMPIVALSNFLDGMQCVLSGTARGCGWQKIGAFVNL 420

Query: 420 GSYYLVGIPSAILLAFLLHFGGR 442
           GSYYLVGIP AILLAF+ H GGR
Sbjct: 421 GSYYLVGIPCAILLAFVFHIGGR 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734274|emb|CBI15521.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224121238|ref|XP_002318533.1| predicted protein [Populus trichocarpa] gi|222859206|gb|EEE96753.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356527876|ref|XP_003532532.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max] Back     alignment and taxonomy information
>gi|359491480|ref|XP_002280388.2| PREDICTED: MATE efflux family protein DTX1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356531168|ref|XP_003534150.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max] Back     alignment and taxonomy information
>gi|297734273|emb|CBI15520.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449439113|ref|XP_004137332.1| PREDICTED: MATE efflux family protein 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449497528|ref|XP_004160427.1| PREDICTED: MATE efflux family protein 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449497524|ref|XP_004160426.1| PREDICTED: MATE efflux family protein 5-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
TAIR|locus:2156737486 AT5G52450 "AT5G52450" [Arabido 0.911 0.847 0.735 6.2e-165
TAIR|locus:2027834476 AT1G73700 "AT1G73700" [Arabido 0.904 0.859 0.669 2e-150
TAIR|locus:2040839480 AT2G34360 "AT2G34360" [Arabido 0.935 0.881 0.648 1.5e-147
TAIR|locus:2026311485 AT1G71140 "AT1G71140" [Arabido 0.926 0.863 0.508 1.2e-111
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.893 0.839 0.495 4.3e-109
TAIR|locus:2037868482 AT1G15180 "AT1G15180" [Arabido 0.893 0.838 0.507 2.1e-107
TAIR|locus:2037723487 AT1G15150 "AT1G15150" [Arabido 0.893 0.829 0.477 1.1e-105
TAIR|locus:2033334482 AT1G66760 "AT1G66760" [Arabido 0.951 0.892 0.455 6.7e-104
TAIR|locus:2037848487 AT1G15160 "AT1G15160" [Arabido 0.893 0.829 0.475 3.7e-103
TAIR|locus:2050180476 AT2G04050 "AT2G04050" [Arabido 0.904 0.859 0.479 6.4e-99
TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1605 (570.0 bits), Expect = 6.2e-165, P = 6.2e-165
 Identities = 303/412 (73%), Positives = 356/412 (86%)

Query:    31 EKKKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGF 90
             EK  + EEVK+QLWLSGPLI+VSLLQFCLQ+ISVMFVGHLG LPLS AS+ATSFA+VTGF
Sbjct:    19 EKSSVKEEVKKQLWLSGPLIAVSLLQFCLQVISVMFVGHLGSLPLSAASIATSFASVTGF 78

Query:    91 SFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQ 150
             SFL+G +SAL+TLCGQ+YGAK+Y MLGI MQR MFVL L S+PL++IWANTE LLV   Q
Sbjct:    79 SFLMGTASALDTLCGQAYGAKKYGMLGIQMQRAMFVLTLASIPLSIIWANTEHLLVFFGQ 138

Query:   151 DSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILV 210
             +  I+  AG YA++MIPSIFAY +LQC  RFLQ QN VFP+V  SG+T  LH+L+CW+LV
Sbjct:   139 NKSIATLAGSYAKFMIPSIFAYGLLQCFNRFLQAQNNVFPVVFCSGVTTSLHVLLCWVLV 198

Query:   211 FKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPS 270
             FKSGLG +GAALANSISYW+NV+LL  YVKFS SC+ TWTGFSKEAL ++  F+RLA+PS
Sbjct:   199 FKSGLGFQGAALANSISYWLNVVLLFCYVKFSPSCSLTWTGFSKEALRDILPFLRLAVPS 258

Query:   271 AVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNEL 330
             A+MVCLEMWSFE++VLLSGLLPNP LETSVLSI LNT+ T+WMIPFGLSGAASTR+SNEL
Sbjct:   259 ALMVCLEMWSFELLVLLSGLLPNPVLETSVLSICLNTSGTMWMIPFGLSGAASTRISNEL 318

Query:   331 GAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAA 390
             GAG+P+ A+LAV VV+ +AV E I++GSVLILIRN+WG AYS+E+EVV YVASM+PILA 
Sbjct:   319 GAGNPKVAKLAVRVVICIAVAESIVIGSVLILIRNIWGLAYSSELEVVSYVASMMPILAL 378

Query:   391 SNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGR 442
              NFLD LQCVLSG+ARGCGWQ IGA +NLGSYYLVG+PS +LLAF  H GGR
Sbjct:   379 GNFLDSLQCVLSGVARGCGWQKIGAIINLGSYYLVGVPSGLLLAFHFHVGGR 430
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009624 "response to nematode" evidence=IEP
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2027834 AT1G73700 "AT1G73700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040839 AT2G34360 "AT2G34360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9USK3YJ2D_SCHPONo assigned EC number0.33830.96460.8089yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-176
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 7e-78
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-59
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 1e-57
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-37
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 3e-35
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-32
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 4e-31
pfam01554161 pfam01554, MatE, MatE 8e-29
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 2e-23
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 3e-22
pfam01554161 pfam01554, MatE, MatE 6e-21
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 1e-20
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 6e-19
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 2e-16
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 7e-15
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 8e-15
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 3e-14
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 3e-12
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 5e-09
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 8e-09
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 1e-07
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 2e-07
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-06
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 2e-06
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-05
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 2e-05
cd13123420 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of 5e-05
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 1e-04
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 4e-04
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 0.001
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 0.002
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 0.003
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  500 bits (1291), Expect = e-176
 Identities = 213/409 (52%), Positives = 302/409 (73%), Gaps = 3/409 (0%)

Query: 38  EVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLS 97
           E K+ L L+ PL+  SLLQ+ L ++SV+FVGHLG+L L+ AS+A+SFA VTGFS L+GL+
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 98  SALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKE 157
           SAL+TLCGQ++GAK Y ++G+++QR + +LLL  VP++L+W NTE +L+   QD EI++ 
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 158 AGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGS 217
           AG Y R++IP +FAYA+ + L R+LQ Q IV P+V  S +  LL+IL+ ++LVF  GLG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 218 RGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLE 277
            GAALA SISYW+ V+LL +Y+ FS     TW GFS+EA      F++LAIPSA+M+CLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 278 MWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEA 337
            W+FE++VLL+GLLP   +  +  SI L T S ++MIP G+S AAS RV NELGAG+P+ 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 338 ARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGL 397
           A+LA  V L++++  G++V  +L+++R+VW Y ++++ EV+  VA +LPILA     DGL
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 398 QCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRVKGF 446
           Q VLSG+ RGCG Q +GA+VNL +YYL+G+P  +LLAF+L  G  +KG 
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLG--LKGL 406

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 452
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PRK10459492 colanic acid exporter; Provisional 99.97
COG2244480 RfbX Membrane protein involved in the export of O- 99.95
PRK00187464 multidrug efflux protein NorA; Provisional 99.91
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.9
PRK01766456 multidrug efflux protein; Reviewed 99.89
PRK10189478 MATE family multidrug exporter; Provisional 99.89
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.88
TIGR01695502 mviN integral membrane protein MviN. This model re 99.84
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.82
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.81
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.78
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.78
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.77
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.75
PRK10459492 colanic acid exporter; Provisional 99.73
PRK15099416 O-antigen translocase; Provisional 99.72
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.72
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.68
COG2244480 RfbX Membrane protein involved in the export of O- 99.66
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.65
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.19
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.07
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.07
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.06
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.51
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.37
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.07
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.62
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.38
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.35
COG4267467 Predicted membrane protein [Function unknown] 97.12
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 96.93
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1e-55  Score=426.07  Aligned_cols=413  Identities=28%  Similarity=0.379  Sum_probs=391.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccc
Q 012981           35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYH  114 (452)
Q Consensus        35 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~  114 (452)
                      .++..|+++++++|++++++...+++.+|+.++||+|++++|+.++++++..+. ..+..|++.|..+.++|++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            456789999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 012981          115 MLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL  193 (452)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  193 (452)
                      ++++..++++.+.++++++..++ +++.++++.+++.++|+.+.+.+|+++..++.|+..+...+.+.+|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999777777 88999999999998999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh-cC-CccchhhHHHHHHHHHHHHHHHHHHHhccc-cccccCCccHHHHHhHHHHHHHHhhh
Q 012981          194 SSGITALLHILVCWILVFK-SG-LGSRGAALANSISYWINVLLLAIYVKFSSS-CAKTWTGFSKEALNNVFNFVRLAIPS  270 (452)
Q Consensus       194 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~  270 (452)
                      .++++.++|+++|++++++ ++ +|+.|+++||++++.+.+++.+++++++++ ......+..+.+++.+|++++.|.|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 46 999999999999999999999999987764 22222333344789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 012981          271 AVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAV  350 (452)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  350 (452)
                      ++++......+...+.+++++|  ++++|+|+++.++.++.++++.+++++..|.+++++|+||++++++..+.+.+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998  78999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHhHHHH
Q 012981          351 TEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSA  430 (452)
Q Consensus       351 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~  430 (452)
                      .+++..+++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+.+|+.||+|.+++.++.+.|++.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-hCCceeEEEeEeee
Q 012981          431 ILLAFL-LHFGGRVKGFSFFS  450 (452)
Q Consensus       431 ~~l~~~-~g~~g~~~a~~~~~  450 (452)
                      |++.+. +|..|+|+++....
T Consensus       409 ~~l~~~~~g~~Gvw~~~~~~~  429 (455)
T COG0534         409 YLLGFFFLGLAGVWIGFPLSL  429 (455)
T ss_pred             HHHhhhcccchHHHHHHHHHH
Confidence            999999 99999999876543

>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 1e-25
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 6e-09
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 190/418 (45%), Gaps = 18/418 (4%)
Query: 23  NNNHQTCSEKKKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMAT 82
           N+ H+   E   +I+       L+ P++  S+ Q  +  +  +  G +  + ++  S+A 
Sbjct: 2   NSVHRYKKEASNLIK-------LATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAA 54
Query: 83  SFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTE 142
           S   +    F VGL  AL  +  Q  GA + H +   + +G+ + LL+SVP+  +   T+
Sbjct: 55  SI-WLPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQ 113
Query: 143 SLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLH 202
            ++     +  ++ +   Y   +I ++ AY + Q L  F    ++  P ++   I  LL+
Sbjct: 114 FIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLN 173
Query: 203 ILVCWILVF-KSG---LGSRGAALANSISYWINVLLLAIYVKFSSSCA--KTWTGFSKEA 256
           I + WI V+ K G   LG  G  +A +I YWI +LLL  Y+  S   A  K +  F K  
Sbjct: 174 IPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQ 233
Query: 257 LNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPF 316
              +    RL  P A  +  E+  F ++ LL    P  +   +   ++LN +S V+M P 
Sbjct: 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVA--PLGSTVVAAHQVALNFSSLVFMFPM 291
Query: 317 GLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIE 376
            +  A S RV ++LG    + A +A  V L+  +    +   + +L R      Y+    
Sbjct: 292 SIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQV 351
Query: 377 VVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAF-VNLGSYYLVGIPSAILL 433
           VV     +L   A    +D +Q V +G  RG    M   F     SY+++G+P+  +L
Sbjct: 352 VVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYK-DMTAIFHRTFISYWVLGLPTGYIL 408
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-106
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  321 bits (825), Expect = e-106
 Identities = 101/418 (24%), Positives = 184/418 (44%), Gaps = 9/418 (2%)

Query: 30  SEKKKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTG 89
           +   +  +E    + L+ P++  S+ Q  +  +  +  G +  + ++  S+A S   +  
Sbjct: 2   NSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-WLPS 60

Query: 90  FSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAH 149
             F VGL  AL  +  Q  GA + H +   + +G+ + LL+SVP+  +   T+ ++    
Sbjct: 61  ILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMD 120

Query: 150 QDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWIL 209
            +  ++ +   Y   +I ++ AY + Q L  F    ++  P ++   I  LL+I + WI 
Sbjct: 121 VEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIF 180

Query: 210 VFKSG----LGSRGAALANSISYWINVLLLAIYVKFSSSCA--KTWTGFSKEALNNVFNF 263
           V+       LG  G  +A +I YWI +LLL  Y+  S   A  K +  F K     +   
Sbjct: 181 VYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRL 240

Query: 264 VRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAAS 323
            RL  P A  +  E+  F ++ LL   L +  +  +   ++LN +S V+M P  +  A S
Sbjct: 241 FRLGFPVAAALFFEVTLFAVVALLVAPLGSTVV--AAHQVALNFSSLVFMFPMSIGAAVS 298

Query: 324 TRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVAS 383
            RV ++LG    + A +A  V L+  +    +   + +L R      Y+    VV     
Sbjct: 299 IRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQ 358

Query: 384 MLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGG 441
           +L   A    +D +Q V +G  RG             SY+++G+P+  +L        
Sbjct: 359 LLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTE 416
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query452
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.87
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=9.5e-49  Score=383.67  Aligned_cols=414  Identities=25%  Similarity=0.398  Sum_probs=382.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCc
Q 012981           33 KKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQ  112 (452)
Q Consensus        33 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~  112 (452)
                      +..++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.++|++|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            34567889999999999999999999999999999999999999999999998887 78889999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHH
Q 012981          113 YHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMV  192 (452)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  192 (452)
                      +|+.++.++.++.+....+++.++++++.++++.+++.+++..+.+..|+++..++.++..+...+.+.+++.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999998877667788888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh----cCCccchhhHHHHHHHHHHHHHHHHHHHhcccccc-c-cCCccHHHHHhHHHHHHH
Q 012981          193 LSSGITALLHILVCWILVFK----SGLGSRGAALANSISYWINVLLLAIYVKFSSSCAK-T-WTGFSKEALNNVFNFVRL  266 (452)
Q Consensus       193 ~~~~~~~~~~i~~~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~  266 (452)
                      ..++++.++|+++++++++.    +++|+.|+++++.+++.+..++..++.+++++.+. + ++++.+.+++..|+++++
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999975    27999999999999999999998888766543321 1 123323467889999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012981          267 AIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVL  346 (452)
Q Consensus       267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~  346 (452)
                      +.|.++++....+.+..++.+++.++  ++++|+|++++++.++..++..+++++..|.+++++|++|.++.++..+++.
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~  321 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL  321 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999996  7799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHh
Q 012981          347 VMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVG  426 (452)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  426 (452)
                      ++...++++++++++++++++.++|++|+|+.+.+..++++++++.++.+++.+..+.+++.||+|.+++.++.+.|+++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  401 (460)
T 3mkt_A          322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG  401 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999988999


Q ss_pred             HHHHHHHHHH-------hCCceeEEEeEee
Q 012981          427 IPSAILLAFL-------LHFGGRVKGFSFF  449 (452)
Q Consensus       427 i~l~~~l~~~-------~g~~g~~~a~~~~  449 (452)
                      +|+++++.+.       +|..|+|++..++
T Consensus       402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~  431 (460)
T 3mkt_A          402 LPTGYILGMTNWLTEQPLGAKGFWLGFIIG  431 (460)
T ss_dssp             HHHHHHHHHHHTSSCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhccccccCchhHHHHHHHH
Confidence            9999999999       8999998887654
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00