Citrus Sinensis ID: 012995

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
MGSACCVAARDGTLPNRTRVETSRRNLICSPSWSFRRDNQRRVAGEVEESPYQVSRGVNRNFSREIKGPFDSERGNHSDGGSLEIVGTPSSLKSPVHEEMGASLMTMPSDLSMASNYSTEVKSMASNYSVEVKNLAESPNIADISTQKLSFSIPSPFSTPIADPLCAHAHPLPPNSTPSRRARRSPGHRLLRQVSDSRILGLKSPNNYCVSEGRSSFVLSACSNDLTAGSYGGSSDGWSMRTFSELVASSQRERWSFDSEHLGFGHCNVSGSSSRFSCSPSVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSRKAFKAEAELRAKYHKISRNRVVDSYLDGDCEDFYNPKDAKQDGKTPKIEASSSTRSSSVKPFLRRHFSLGSKWSRSVTDNDSVWKKGFWARYRKD
ccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEcccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEccccc
ccccEEEEcccccccccccccHccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHcccccccEEEEEEccccEcHHHHHHccccHccccccccccccccccccccccHHHHHcccHHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccEcccccc
mgsaccvaardgtlpnrtrvetsrrnlicspswsfrrdnqrrvageveespyqvsrgvnrnfsreikgpfdsergnhsdggsleivgtpsslkspvheemgaslmtmpsdlsmasNYSTEVKSMASNYSVEVKnlaespniadistqklsfsipspfstpiadplcahahplppnstpsrrarrspghrllrqvsdsrilglkspnnycvsegrSSFVLSACsndltagsyggssdgwsmRTFSELVASSQrerwsfdsehlgfghcnvsgsssrfscspsvdlqacgaCSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEimtvdtdkydpacpicvvgekqVSKMSRKAFKAEAELRAKYHKisrnrvvdsyldgdcedfynpkdakqdgktpkieassstrsssvkpflrrhfslgskwsrsvtdndsvwkKGFWARYRKD
mgsaccvaardgtlpnrtrvetsrrnlicspswsfrrdnqrrvageveespyqvsrgvnrnfsreikgpfdsergnhsdgGSLEIVGTPSSLKSPVHEEMGASLMTMPSDLSMASNYSTEVKSMASNYSVEVKNLAESPNIADISTQKLSFSIPSPFSTPIADPLCAHAhplppnstpsrrarrspghrllrqvsdsrilglkspnnyCVSEGRSSFVLSACSNDLTAGsyggssdgwSMRTFSELVASSQRERWSFDSEHLGFGHCNVSGSSSRFSCSPSVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVvgekqvskmSRKAFKAEAELrakyhkisrnrvvdsYLDGDCEDFynpkdakqdgktpkieassstrsssvkpflrrhfslgskwsrsvtdndsvwkkgfwaryrkd
MGSACCVAARDGTLPNRTRVETSRRNLICSPSWSFRRDNQRRVAGEVEESPYQVSRGVNRNFSREIKGPFDSERGNHSDGGSLEIVGTPSSLKSPVHEEMGASLMTMPSDLSMASNYSTEVKSMASNYSVEVKNLAESPNIADISTQKLsfsipspfstpiADPLCAHAHPLPPNSTPSRRARRSPGHRLLRQVSDSRILGLKSPNNYCVSEGRSSFVLSACSNDLTAGSYGGSSDGWSMRTFSELVASSQRERWSFDSEHLGFGHCNVsgsssrfscspsVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSRKAFKAEAELRAKYHKISRNRVVDSYLDGDCEDFYNPKDAKQDGKTPKIEASSSTRSSSVKPFLRRHFSLGSKWSRSVTDNDSVWKKGFWARYRKD
**************************LIC*************************************************************************************************************************************************************************ILGLKSPNNYCVSEGRSSFVLSACSNDLTAGSYG****GWSMRTFSELV******RWSFDSEHLGFGHCNVSG***RFSCSPSVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVS******FKAEAELRAKYHKISRNRVVDSYLDGDCEDFY*******************************HFSLGSKWSRSVTDNDSVWKKGFWARY***
*GSACCVAARD****************ICSPSWSFRRDNQRRVAGE***********************************************************************************************************************************************************************************************************************************************ACGACSKLLTERS***********ELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE********************************YLDGD***********************************************************W******
MGSACCVAARDGTLPNRTRVETSRRNLICSPSWSFRRDNQRRVAGEVEESPYQVSRGVNRNFSREIKGPFDSERGNHSDGGSLEIVGTPSSLKSPVHEEMGASLMTMPSDLSMASNYSTEVKSMASNYSVEVKNLAESPNIADISTQKLSFSIPSPFSTPIADPLCAHAHPLPP**************RLLRQVSDSRILGLKSPNNYCVSEGRSSFVLSACSNDLTAGSYGGSSDGWSMRTFSE*********WSFDSEHLGFGHCNVS*************LQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEK*********FKAEAELRAKYHKISRNRVVDSYLDGDCEDFYNPKD**********************PFLRRHFSLGSKWSRSVTDNDSVWKKGFWARYRKD
****CC***R*****************ICSPSWSFRRDNQRRVAGEVEESPYQVSR*****************************************************************************************************************************************VSDSRILGLK********************************************************************************LQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSRKAFKAEAELRAKYHKISRNRVVDSYLDG*******************************************************************
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MGSACCVAARDGTLPNRTRVETSRRNLICSPSWSFRRDNQRRVAGEVEESPYQVSRGVNRNFSREIKGPFDSERGNHSDGGSLEIVGTPSSLKSPVHEEMGASLMTMPSDLSMASNYSTEVKSMASNYSVEVKNLAESPNIADISTQKLSFSIPSPFSTPIADPLCAHAHPLPPNSTPSRRARRSPGHRLLRQVSDSRILGLKSPNNYCVSEGRSSFVLSACSNDLTAGSYGGSSDGWSMRTFSELVASSQRERWSFDSEHLGFGHCNVSGSSSRFSCSPSVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSRKAFKAEAELRAKYHKISRNRVVDSYLDGDCEDFYNPKDAKQDGKTPKIEASSSTRSSSVKPFLRRHFSLGSKWSRSVTDNDSVWKKGFWARYRKD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
255538744439 ubiquitin-protein ligase, putative [Rici 0.966 0.995 0.694 1e-174
225458179443 PREDICTED: uncharacterized protein LOC10 0.973 0.993 0.687 1e-158
224082912439 predicted protein [Populus trichocarpa] 0.969 0.997 0.666 1e-156
388503346433 unknown [Medicago truncatula] 0.955 0.997 0.618 1e-146
356564306434 PREDICTED: uncharacterized protein LOC10 0.955 0.995 0.639 1e-144
388517495426 unknown [Lotus japonicus] 0.940 0.997 0.615 1e-143
224066133428 predicted protein [Populus trichocarpa] 0.944 0.997 0.640 1e-143
356510086437 PREDICTED: uncharacterized protein LOC10 0.957 0.990 0.618 1e-141
356551938434 PREDICTED: uncharacterized protein LOC10 0.955 0.995 0.626 1e-140
356518016432 PREDICTED: uncharacterized protein LOC10 0.946 0.990 0.598 1e-136
>gi|255538744|ref|XP_002510437.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223551138|gb|EEF52624.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 314/452 (69%), Positives = 356/452 (78%), Gaps = 15/452 (3%)

Query: 1   MGSACCVAARDGTLPNRTRVETSRRNLICSPSWSFRRDNQRRVAGEVEESPYQVSRGVNR 60
           MG+ACC+AAR+  LPNRT   T  RN  CSP+WSFR +N+RRVAGE+E+S YQ S G++R
Sbjct: 1   MGAACCIAARNKDLPNRTGGNTLHRNARCSPTWSFRWENRRRVAGEIEDSLYQTSHGLSR 60

Query: 61  NFSREIKGPFDSERGNHSDGGSL-EIVGTPSSLKSPVHEEMGASLMTMPSDLSMASNYST 119
           + S E+KGP  S+RGN SD GSL E  GTP SLKSP+HE +GA+L+  PS LS+ SNY  
Sbjct: 61  DVSVEVKGPLSSDRGNLSDEGSLHESFGTPISLKSPLHERIGANLIAQPSGLSLESNYP- 119

Query: 120 EVKSMASNYSVEVKNLAESPNIADISTQKLSFSIPSPFSTPIADPLCAHAHPLPPNSTPS 179
                        KN AESP+I ++S  KL +S+ S FSTP ADPL    HPLPPNSTPS
Sbjct: 120 ----------ALGKNSAESPDIVELSAPKLPYSVHSSFSTPSADPLPTGGHPLPPNSTPS 169

Query: 180 RRARRSPGHRLLRQVSDSRILGLKSPNNYCVSEGRSSFVLSACSNDLTAGSYGGSSDGWS 239
           RRA RSPGHRLLRQ+SDSRILGLKSPNNY +SEGRSSFVLS CS DLT GS+GGSSDGWS
Sbjct: 170 RRACRSPGHRLLRQISDSRILGLKSPNNYSLSEGRSSFVLSTCSQDLTMGSHGGSSDGWS 229

Query: 240 MRTFSELVASSQRERWSFDSEHLGFGHCNVSGSSSRFSCSPSVDLQACGACSKLLTERSS 299
           MRTFSELVASSQRERWSFDSEH G+G    SG SSRFSCSPS+DLQ CGACSK LTE+SS
Sbjct: 230 MRTFSELVASSQRERWSFDSEHFGYGFGKASGCSSRFSCSPSLDLQTCGACSKFLTEKSS 289

Query: 300 WCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSRKA 359
           W SQRI +NNELSV +VLVCGHVYHAECLE MT++ DKYDPACPIC+ GEKQVSKMS+KA
Sbjct: 290 WSSQRILSNNELSVVSVLVCGHVYHAECLETMTLEVDKYDPACPICMGGEKQVSKMSKKA 349

Query: 360 FKAEAELRAKYHKISRNRVVDSYLDGDCEDFYNPKDAKQDGKTPKIEASSSTRSSSVKPF 419
            KAEAEL+A+ HKISRNRVVDSYLD D EDF   K A Q    PK+E SS   SSS KPF
Sbjct: 350 LKAEAELKARSHKISRNRVVDSYLDSDSEDFDYEKKATQ--VAPKVEPSSGAASSS-KPF 406

Query: 420 LRRHFSLGSKWSRSVTDNDSVWKKGFWARYRK 451
           LRRHF  GSKWSRS+++NDS  K+GFWARYRK
Sbjct: 407 LRRHFPFGSKWSRSLSENDSARKRGFWARYRK 438

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225458179|ref|XP_002281188.1| PREDICTED: uncharacterized protein LOC100242078 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224082912|ref|XP_002306889.1| predicted protein [Populus trichocarpa] gi|222856338|gb|EEE93885.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388503346|gb|AFK39739.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356564306|ref|XP_003550396.1| PREDICTED: uncharacterized protein LOC100800918 [Glycine max] Back     alignment and taxonomy information
>gi|388517495|gb|AFK46809.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224066133|ref|XP_002302015.1| predicted protein [Populus trichocarpa] gi|222843741|gb|EEE81288.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356510086|ref|XP_003523771.1| PREDICTED: uncharacterized protein LOC100793040 [Glycine max] Back     alignment and taxonomy information
>gi|356551938|ref|XP_003544329.1| PREDICTED: uncharacterized protein LOC100795191 [Glycine max] Back     alignment and taxonomy information
>gi|356518016|ref|XP_003527680.1| PREDICTED: uncharacterized protein LOC100808476 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
TAIR|locus:2018404455 AT1G75400 [Arabidopsis thalian 0.955 0.949 0.534 3.6e-112
TAIR|locus:2013114444 AT1G19680 [Arabidopsis thalian 0.922 0.939 0.496 9.4e-98
TAIR|locus:2136368429 AT4G39140 [Arabidopsis thalian 0.898 0.946 0.352 1.3e-52
TAIR|locus:2050110421 AT2G21500 [Arabidopsis thalian 0.725 0.779 0.390 6e-48
TAIR|locus:2035819348 AT1G14180 [Arabidopsis thalian 0.292 0.379 0.330 1e-11
TAIR|locus:2172314320 AT5G18260 [Arabidopsis thalian 0.134 0.190 0.426 1.2e-09
TAIR|locus:2018404 AT1G75400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1107 (394.7 bits), Expect = 3.6e-112, P = 3.6e-112
 Identities = 246/460 (53%), Positives = 295/460 (64%)

Query:     1 MGSACCVAARDGTLPNRTRVETS--RRNLICSPSWSFRRDNQRRVAGEVEESPYQVSRGV 58
             MGS CCVA +D  +P      +S   RN  CSP WSFRRDN+RRVA E+E SPY      
Sbjct:     1 MGSVCCVAVKDRKVPPSGGPASSSVHRNSACSPQWSFRRDNRRRVADEIEGSPYYSPYVA 60

Query:    59 NRNFSREIKGPFDSERGNHSDGGSLEI--VGTPSSLKSPVHEEMGASLMTMPSDLSMASN 116
             +R  S + K    SERG  S+GG+     +GTP+S KS    EM  + M  PS  S    
Sbjct:    61 SRGISMD-KMSLGSERGTLSEGGTPPDGHLGTPASQKSAT-PEMSTNSMVPPSSGS---- 114

Query:   117 YSTEVKSMASNYSVEVKNLAESPNIADISTQKLXXXXXXXXXXXXADPLCAHAHPLPPNS 176
                   S+AS+  +EVKNL +SP I   S Q              +D   AH   LPP S
Sbjct:   115 ------SLASSDLIEVKNLVDSPGIVP-SAQSKPLFSTPSLPNPVSDLSSAHTRLLPPKS 167

Query:   177 TPSRRARRSPGHRLLRQVSDSRILGLKSP-NNYCVSEGRSSFVLSACSNDLTAGS-YGGS 234
             TPSRRARRSPGH+L RQVSDS+ILGLKSP NNY +SEGRSSFVLS CSND   GS Y  S
Sbjct:   168 TPSRRARRSPGHQLFRQVSDSQILGLKSPINNYSISEGRSSFVLSTCSNDFATGSQYASS 227

Query:   235 SDGWSMRTFSELVASSQRERWSFDSEHLGFGHCNVXXXXXXXXXX-XXVDLQACGACSKL 293
               GWSM TFSELVA SQR+RWSFDSEHLG G   +             VD Q CGACSKL
Sbjct:   228 EGGWSMNTFSELVAYSQRDRWSFDSEHLGSGRRKLSGGSSRFSFSPSVVDQQVCGACSKL 287

Query:   294 LTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVS 353
             LTERSS       A  EL +AAVL CGHVYHAECLE MT D +KYDPACPIC +GEK+V+
Sbjct:   288 LTERSSI------ATFELPIAAVLACGHVYHAECLETMTTDIEKYDPACPICTIGEKRVA 341

Query:   354 KMSRKAFKAEAELRAKYHKISRNRVVDSYLDGDCEDFYNPKDAKQDGKTPKIEASSSTRS 413
             K++RKA KAEAE +AK +K  +NRVVDSY + +C++F   K  K++GK  K+EAS S++S
Sbjct:   342 KITRKALKAEAEAKAKQYKRCKNRVVDSYGESECDEFVFQKMGKREGKALKLEASCSSKS 401

Query:   414 SSVKPFLRRHF-SLGSKWSRSVTDNDSVWKKGFWARYRKD 452
             SS K FL+ HF S+ SKW++  +  DS  KKGFW+R+R +
Sbjct:   402 SSNKSFLKWHFASISSKWNKP-SSKDSALKKGFWSRHRNN 440
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2013114 AT1G19680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136368 AT4G39140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050110 AT2G21500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035819 AT1G14180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172314 AT5G18260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 452
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 99.02
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 98.96
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 98.65
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 98.54
PHA02929238 N1R/p28-like protein; Provisional 98.49
cd0016245 RING RING-finger (Really Interesting New Gene) dom 98.47
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 98.44
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.41
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 98.29
KOG0802543 consensus E3 ubiquitin ligase [Posttranslational m 98.21
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 98.19
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 98.19
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 98.13
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 98.13
PF1463444 zf-RING_5: zinc-RING finger domain 98.09
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 98.04
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 98.02
smart0050463 Ubox Modified RING finger domain. Modified RING fi 97.98
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 97.86
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 97.78
KOG0827 465 consensus Predicted E3 ubiquitin ligase [Posttrans 97.74
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 97.71
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 97.66
PHA02926242 zinc finger-like protein; Provisional 97.65
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 97.58
COG519488 APC11 Component of SCF ubiquitin ligase and anapha 97.52
KOG149384 consensus Anaphase-promoting complex (APC), subuni 97.42
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 97.4
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 97.39
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 97.34
KOG0804 493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 97.33
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 97.27
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 97.12
KOG1941518 consensus Acetylcholine receptor-associated protei 97.1
KOG1645 463 consensus RING-finger-containing E3 ubiquitin liga 97.07
KOG1940276 consensus Zn-finger protein [General function pred 97.07
PF10367109 Vps39_2: Vacuolar sorting protein 39 domain 2; Int 97.02
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 96.96
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 96.74
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 96.73
KOG2930114 consensus SCF ubiquitin ligase, Rbx1 component [Po 96.67
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 96.58
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 96.41
KOG0825 1134 consensus PHD Zn-finger protein [General function 96.15
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 95.9
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 95.84
KOG3970299 consensus Predicted E3 ubiquitin ligase [Posttrans 95.77
PF04641260 Rtf2: Rtf2 RING-finger 95.54
KOG3039303 consensus Uncharacterized conserved protein [Funct 95.39
COG5222427 Uncharacterized conserved protein, contains RING Z 95.28
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 95.25
COG52191525 Uncharacterized conserved protein, contains RING Z 94.72
COG5152259 Uncharacterized conserved protein, contains RING a 94.66
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 94.53
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 94.31
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 93.89
KOG0827 465 consensus Predicted E3 ubiquitin ligase [Posttrans 93.82
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 93.6
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 93.47
KOG2034911 consensus Vacuolar sorting protein PEP3/VPS18 [Int 93.43
KOG14283738 consensus Inhibitor of type V adenylyl cyclases/Ne 93.23
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 92.77
PF1290647 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A. 92.57
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 92.16
PF05883134 Baculo_RING: Baculovirus U-box/Ring-like domain; I 91.94
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 91.72
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 91.64
KOG4185 296 consensus Predicted E3 ubiquitin ligase [Posttrans 91.56
KOG4445368 consensus Uncharacterized conserved protein, conta 91.25
KOG0297 391 consensus TNF receptor-associated factor [Signal t 90.56
PHA02862156 5L protein; Provisional 88.88
COG5236 493 Uncharacterized conserved protein, contains RING Z 88.69
KOG3800 300 consensus Predicted E3 ubiquitin ligase containing 88.48
PHA02825162 LAP/PHD finger-like protein; Provisional 87.96
KOG4739233 consensus Uncharacterized protein involved in syna 87.31
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 85.16
KOG1829580 consensus Uncharacterized conserved protein, conta 84.97
KOG1002 791 consensus Nucleotide excision repair protein RAD16 84.66
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 82.69
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 82.49
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 82.38
COG5175 480 MOT2 Transcriptional repressor [Transcription] 81.0
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 80.8
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information 
Probab=99.02  E-value=6.9e-11  Score=85.47  Aligned_cols=43  Identities=28%  Similarity=0.766  Sum_probs=34.6

Q ss_pred             ccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcc
Q 012995          286 ACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICV  346 (452)
Q Consensus       286 ~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~  346 (452)
                      .|+||.+.|...              ..+.+|+|||+||.+||.+|+...    ..||+|+
T Consensus         2 ~C~IC~~~~~~~--------------~~~~~l~C~H~fh~~Ci~~~~~~~----~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDG--------------EKVVKLPCGHVFHRSCIKEWLKRN----NSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTT--------------SCEEEETTSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred             CCcCCChhhcCC--------------CeEEEccCCCeeCHHHHHHHHHhC----CcCCccC
Confidence            699999998642              345688999999999999999753    5899996

...
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1940 consensus Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>PHA02862 5L protein; Provisional Back     alignment and domain information
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02825 LAP/PHD finger-like protein; Provisional Back     alignment and domain information
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 60/464 (12%), Positives = 116/464 (25%), Gaps = 122/464 (26%)

Query: 46  EVEESPYQVSRGVNRNFSREIKGPF------DSERGNHSDGGSLEIVGTPSSLKSPVHEE 99
           E  E  YQ  + +   F       F      D  +   S      I+ +           
Sbjct: 10  ETGEHQYQ-YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK-------DAV 61

Query: 100 MGASLMTMPSDLSMASNYSTEVKS-MASNYSVEVKNLAESPNIADISTQKLSFSIPSPFS 158
            G   +               V+  +  NY      L        I T++   S+ +   
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF----LMSP-----IKTEQRQPSMMTRMY 112

Query: 159 TPIADPLCAHAHPLPPNSTPSRRARRSPGHRLLRQVSDSRILGLKSPNNYCVSEG----- 213
               D L          +       R   +  LRQ     +L L+ P    + +G     
Sbjct: 113 IEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQA----LLELR-PAKNVLIDGVLGSG 162

Query: 214 RSSFVLSACSND------------LTAGSYGGSSDGWSM---------RTFSELVASSQR 252
           ++   L  C +             L   +         M           ++     S  
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 253 ERWSFDS---------EHLGFGHC-----NVSGSSSRFSCSPSV----DLQACGACSKLL 294
            +    S         +   + +C     NV         +       +L     C  LL
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNV--------QNAKAWNAFNLS----CKILL 270

Query: 295 TERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMT--VDTDKYD-P--AC---P--I 344
           T R    +  + A     ++       +   E   ++   +D    D P       P  +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 345 CVVGEKQVSKMSR-KAFKAEAELRAKYHKISRNRVVDSYLD----GDCEDFYN-----PK 394
            ++ E     ++    +K         +      +++S L+     +    ++     P 
Sbjct: 331 SIIAESIRDGLATWDNWK-------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 395 DAKQDGKTPKI---EASSSTRSSSVKPFLRRHFSLGSKWSRSVT 435
            A        +   +   S     V    +   SL  K  +  T
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--SLVEKQPKEST 425
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query452
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 99.09
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 99.08
2ecm_A55 Ring finger and CHY zinc finger domain- containing 99.0
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 99.0
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 99.0
2ect_A78 Ring finger protein 126; metal binding protein, st 98.99
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 98.98
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 98.98
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 98.98
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 98.97
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 98.96
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 98.93
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 98.93
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 98.87
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 98.85
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 98.78
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 98.75
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 98.74
2ysl_A73 Tripartite motif-containing protein 31; ring-type 98.74
2ysj_A63 Tripartite motif-containing protein 31; ring-type 98.73
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 98.72
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 98.72
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 98.7
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 98.69
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 98.69
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 98.68
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 98.66
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 98.66
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 98.65
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 98.64
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 98.63
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.6
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 98.59
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 98.59
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 98.58
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 98.58
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 98.56
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.55
2ecw_A85 Tripartite motif-containing protein 30; metal bind 98.55
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 98.54
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 98.52
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 98.45
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 98.37
1z6u_A150 NP95-like ring finger protein isoform B; structura 98.33
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 98.28
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 98.22
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 98.22
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 98.19
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 98.18
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 98.18
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 98.16
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 98.14
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 98.13
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 98.05
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 98.05
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 98.03
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 98.01
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 98.01
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 97.96
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 97.94
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 97.87
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 97.85
2ea5_A68 Cell growth regulator with ring finger domain prot 97.83
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 97.6
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 97.5
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 97.45
2f42_A179 STIP1 homology and U-box containing protein 1; cha 97.26
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 97.23
3k1l_B381 Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A 97.17
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 96.58
3nw0_A238 Non-structural maintenance of chromosomes element 96.1
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 95.74
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 88.18
2k16_A75 Transcription initiation factor TFIID subunit 3; p 80.24
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
Probab=99.09  E-value=5.1e-11  Score=98.06  Aligned_cols=65  Identities=22%  Similarity=0.426  Sum_probs=42.6

Q ss_pred             ccccccccccccccccccccccccc-CCccccceeccCchHhHHHHHHHHhccCC-CCCCCCCCccc
Q 012995          283 DLQACGACSKLLTERSSWCSQRIGA-NNELSVAAVLVCGHVYHAECLEIMTVDTD-KYDPACPICVV  347 (452)
Q Consensus       283 d~~~C~IC~k~L~ekS~wss~~i~~-~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~-~~dp~CPIC~~  347 (452)
                      ....|+||.+.|.....+....... .....++.+|+|||+||.+||++|+...+ .....||+|+.
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~   90 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT   90 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCC
Confidence            3458999999997643221110000 11123455889999999999999995332 24578999997
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query452
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 99.19
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 99.06
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.98
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.95
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.91
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.9
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.84
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 98.59
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 98.55
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 98.48
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.46
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.38
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.29
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 98.26
d2c2la280 STIP1 homology and U box-containing protein 1, STU 98.23
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 98.02
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 97.77
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 84.96
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 83.06
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=3.9e-12  Score=104.10  Aligned_cols=64  Identities=25%  Similarity=0.464  Sum_probs=45.3

Q ss_pred             ccccccccccccccccccccccc-cCCccccceeccCchHhHHHHHHHHhccCCC-CCCCCCCccc
Q 012995          284 LQACGACSKLLTERSSWCSQRIG-ANNELSVAAVLVCGHVYHAECLEIMTVDTDK-YDPACPICVV  347 (452)
Q Consensus       284 ~~~C~IC~k~L~ekS~wss~~i~-~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~-~dp~CPIC~~  347 (452)
                      ...|+||.+.|...+.+...... ...+..++.+++|||+||.+||++|+...+. ....||+|+.
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~   90 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT   90 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccc
Confidence            45699999999876555322211 1224446778899999999999999965432 2357999997
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure